BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] (215 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|94263431|ref|ZP_01287244.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93456161|gb|EAT06300.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 569 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 22/233 (9%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 + + + S + A+ + + I H+ +P+ AI S +LL E +++++Q+I Sbjct: 327 RAMEARIRQSEKMAAVGEMAAGIAHEFRNPLAAISGSTQLLAQRLKEQPGQEQLLQIINR 386 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGE 107 + L L I Q + Sbjct: 387 ECDRLEAAVNDFLLFSRPASPRPQWHHLQQLLDESLAVIRQTPAWSQQHRFTWDLPADPM 446 Query: 108 KIDLSRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L+NL A ++ + + +G P Sbjct: 447 VWADGDQLKQVLINLLANACQAMPSGGTIHGAAHRRQPGDGQSPGLVIEISDDGPGI-AP 505 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + D + V + + + + LL Sbjct: 506 ESQARIFEPYFTTRQDGTGLGLAIVHQIIKGHGGEIELASTPGQGTTFTILLP 558 >gi|262197999|ref|YP_003269208.1| multi-sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262081346|gb|ACY17315.1| multi-sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 582 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + + +V L + + H+I +P+ AI S+ELL +M ++ Sbjct: 355 MERQMR-RAERLAVVGTLAAGVAHEIRNPLAAISGSIELLQTMPSVDEDNRMLMDIVTRE 413 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 ++ + ++ + D+ + + Sbjct: 414 IERLDNLIRDLLDYTNPRPRELLGFDAAELVRETVQVFEQDRSFERVSLRAVALEVAPVV 473 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L NL A + T+ + + +G+ E +I D Sbjct: 474 ADPGQIRQVLWNLLRNAAEAARSVVTATVRCDSQPALVVIEVDDDGDGI-ASENLERIFD 532 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E+ + E + S +L + Sbjct: 533 PFFTTKSEGSGLGLATCHSIVREHGGDIRAENLPGGGTRFSVILPR 578 >gi|315647531|ref|ZP_07900633.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315276970|gb|EFU40311.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 520 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 64/224 (28%), Gaps = 11/224 (4%) Query: 1 MAKNIC-FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSM 58 M M +V L + + H+I +P+ +I ++L ++I Sbjct: 296 MRSQEEILRTEKMKMVGELAAGMAHEIRNPLTSIKGFIQLSKNQSYNIQPWYEVIMGEIT 355 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKID 110 S + L D + + + Sbjct: 356 RVGELTAEFLHFSKPHASNMKVESLTDCMTRVYSLCESEAASHGHLFTLDLSDDPIHIVM 415 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++L+NL + ++ G V IS++ + + ++ G E +I D Sbjct: 416 DRDKIIQVLINLIRNSFQAMEHTGTVRISLEAVEALAVVRVEDTGKGI-ADENLAKIFDP 474 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R+ + + + Sbjct: 475 FYTTKEEGTGLGLSLCQKIVEDHGGRITVQSELGKGTTFTLRIP 518 >gi|121534574|ref|ZP_01666396.1| histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306826|gb|EAX47746.1| histidine kinase [Thermosinus carboxydivorans Nor1] Length = 542 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 66/221 (29%), Gaps = 12/221 (5%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAI 61 L + V L + I H+I +P+ ++ ++L+ + + + +++I Sbjct: 301 EAVRLERLASVGQLAAGIAHEIRNPLTSVKGFIQLIMARGDRPVPRDYLEIILTEIERIE 360 Query: 62 IRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ F L + + + V Sbjct: 361 KLIREFHLLARPPQTPQFALLNLRVVLHDVVLLMESQALSKNVALEFMPGEDVTVCGDVS 420 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ +NL A + P+GG V I+++ N + ++ NG + + Sbjct: 421 QLKQVWINLLRNAIEAAPQGGSVDIALRADGNWAVVTVTDNGPGI-PEDILPHLGTPFFT 479 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + + L Sbjct: 480 TKQDGTGLGLSVCYSIVQNHGGNIRVNSRPGEGATFTVQLP 520 >gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8] gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8] Length = 963 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ L + L + + H++ +P+ AI ELL + + E + + L SA Sbjct: 726 DLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPPEAQESVELILESAFRL 785 Query: 64 LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ L+ L Q + V+ RV+V Sbjct: 786 KNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEELPLME 845 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++ NL A P GG V + E ++ G E Sbjct: 846 VDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQR 905 Query: 170 GNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + R+ E + + +L Sbjct: 906 YARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILP 955 >gi|149917201|ref|ZP_01905701.1| multi-sensor signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149822117|gb|EDM81510.1| multi-sensor signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 566 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L AL L + + H++ +P+ AI ELLD + DE +LIR+ Sbjct: 338 LREMERVLRRSERLAALGGLAASVAHEVRNPLAAISGCAELLDTLDANDEDRRLIRVIRR 397 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKID 110 ++ + + YT D+ Q D + + + Sbjct: 398 ESVRLNEIVTELLDYTRPRKLERAPVDLCQALRELAEAFEADPQNAAIDLALELPPTPVH 457 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++I L+ ++ G++ + V S ++ G + I Sbjct: 458 AELDSSQITQVLWNLVRNGAQAMAHEGRLELGVVASLEFVHIHVRDQGRGIPDKDL-EHI 516 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + I V + ++ + L K Sbjct: 517 FEPFFSTKDGGSGIGLALVQRIVEDHGGDIEVYSRVGEGTRFMVNLPK 564 >gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27] gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27] Length = 963 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ L + L + + H++ +P+ AI ELL + + E + + L SA Sbjct: 726 DLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPPEAQESVELILESAFRL 785 Query: 64 LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ L+ L Q + V+ RV+V Sbjct: 786 KNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEELPLME 845 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++ NL A P GG V + E ++ G E Sbjct: 846 VDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQR 905 Query: 170 GNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + R+ E + + +L Sbjct: 906 YARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILP 955 >gi|297568937|ref|YP_003690281.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] gi|296924852|gb|ADH85662.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] Length = 576 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 20/232 (8%) Query: 1 MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + +++ + S + A+ + + + H+ +P+ AI S +LL + +++++ +I Sbjct: 344 LIRDMEARVRQSEKMAAVGEMAAGVAHEFRNPLAAISGSTQLLAQRLQKQPGQEKLLAII 403 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------T 105 +K L + L ++ + I Sbjct: 404 TRECDRLEAAIKNFLLFCRPATPRKQWVNLYELWEECIGLIRQTPDCTERHRLVGKMPPD 463 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161 E + ++LLNL A ++P ++++ L+ G P Sbjct: 464 LEVWADREQLRQVLLNLVSNACQAMPEGGELSCTAENFQSENESGVRIRLQDQGKGI-SP 522 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + + + + V + + R+ + L Sbjct: 523 EDRERIFNPYFTTRQEGTGLGLAIVHQIIAGHGGRIRVASSLGQGTTFTVEL 574 >gi|197118651|ref|YP_002139078.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088011|gb|ACH39282.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 661 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 + + L L A+ L + + H+I +P+ I + ELL E E + I Sbjct: 426 LVQTREELLRVEKLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEEAPIREEVDTIF 485 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106 LKF R G+V L +I I +++++ Sbjct: 486 QQVKRVERIVSNLLKFARREQMEAGAVRLNELLHEIVGQIGHQVSLERIEIAEQYAESVA 545 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKF 164 + + + ++ NL + A ++P GG +++ Q + + +K G E Sbjct: 546 QVEGDADQLRQVFTNLVLNAVQAMPSGGVLSVRTQQVEPAGSYEVKVGDTGVGIAL-ENL 604 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + + + E+ R+ E + + +L + Sbjct: 605 RQVFNPFYTTKANGTGLGLSVSYGIVREHGGRIDVESVPGGGSTFTVVLPR 655 >gi|253574616|ref|ZP_04851957.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846321|gb|EES74328.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 565 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 73/216 (33%), Gaps = 11/216 (5%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLIRLSSMS 59 + + LV + + I H+I +P+ + L+L+ E E + Sbjct: 349 VERLSLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPPTLDHYYRIVMEELDRANGIIND 408 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAKI 118 + + + D + L + + V++ + ++ ++E ++ Sbjct: 409 FLSLAQNRPVESEKCHLHDIIKELTPLLWADANLRGQTIEVKLDDSMPELLLNAKEIKQL 468 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +LNL A ++ G++T+ + + + + G ++ ++ + + Sbjct: 469 ILNLSRNAMEAMAEKGQLTLETRVTDQGGLLVVSDTGPGIPSGQR-EKLFEPFFTTKAKG 527 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + + + L Sbjct: 528 TGLGLALCLSIVERHGGKITVDSTEGQGTTFTVLFP 563 >gi|310640234|ref|YP_003944992.1| sensor protein [Paenibacillus polymyxa SC2] gi|309245184|gb|ADO54751.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 579 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 71/223 (31%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53 ++ N + LV + + I H+I +P+ + L+L+ E + E + Sbjct: 339 RSELGNFERLSLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPDSLSHYYRIVMEELDRA 398 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LS 112 + + + D + L + + +++ + Sbjct: 399 NGIINDFLSLAQNRIVEKEQCHLHDIIRELTPLLWADANLRGQTIELKLEDHVTMLHLNP 458 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +E ++LLNL A ++ G +TIS + ++ ++ G + ++ Sbjct: 459 KEIKQLLLNLSRNAMEAMGEKGVLTISTHEEEDFVELEVRDTGPGIPPKQL-EKLFQPFY 517 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + ++ L + Sbjct: 518 TTKTKGTGLGLALCQSIVERHHGTIAVDSVEGMGTQFKVRLRR 560 >gi|39995881|ref|NP_951832.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982645|gb|AAR34105.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|298504895|gb|ADI83618.1| sensor histidine kinase, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 674 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 + K + + L +L + + H+I +P+ I + ELL + E + I Sbjct: 431 LVKTQEDLVRAAKLADIGMLAAGVAHEINNPMAIIRGNAELLQMALPDEDPNREEVDTIA 490 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + L + + ++ Sbjct: 491 QQVGRVERIIGSLLKFARQQQRRLGTVSLPPLLDDILKQMGHQVPLTRIEIRKAYAVDLP 550 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKF 164 + ++ NL + A ++P GG +T++ + S+ G PE Sbjct: 551 PLAGDPDQLRQVFTNLVLNAIQAMPDGGSLTVATARDEEAGTCTVSVSDTGRGI-APENL 609 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + ++ +L E + +L Sbjct: 610 KRIFSPFFTTKSEGTGLGLSVSYGIVKDHGGNILVESTEGEGTTFRVVLP 659 >gi|329923349|ref|ZP_08278833.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328941441|gb|EGG37733.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 521 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 64/224 (28%), Gaps = 11/224 (4%) Query: 1 MAKNICF-NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSM 58 M M +V L + + H+I +P+ +I ++L ++I Sbjct: 296 MRSQEEMIRTEKMKMVGELAAGMAHEIRNPLTSIKGFIQLSKNQSYNIQPWYEVIMGEIT 355 Query: 59 SAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKID 110 V+SL + + A + Sbjct: 356 RVGELTAEFLHFSKPHASNMRVESLTDCMTRVYSLCESEAASHGHVFLLDLSDEPIHIVM 415 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++L+NL + ++ G V IS++ + + ++ G E +I D Sbjct: 416 DRDKIIQVLINLIRNSFQAMENTGSVRISLKADEGMAVVQIEDTGKGI-ADENLAKIFDP 474 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R+ + + Sbjct: 475 FYTTKEEGTGLGLSLCQKIVEDHGGRITVHSELGIGTTFTLRIP 518 >gi|39996065|ref|NP_952016.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982830|gb|AAR34289.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 655 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 57/231 (24%), Gaps = 19/231 (8%) Query: 2 AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52 +N + +L L S + H+I +P+G I L+ E + + Sbjct: 420 RQNKEMEASLAQQGKMASLGVLSSGVAHEINNPLGVILGYASYLESKITEEDPTYKYIHE 479 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107 I+ S ++ + + D+ V + + Sbjct: 480 IKRESKRCKKIVQDLLSYARTPKPALEPTDINDLLGQIVGFAANHTDMHHVTVVREFAPD 539 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163 + + +I + + + D + G E Sbjct: 540 LPPVMADGDQIRQVAINLILNAGSAMTAGGVLTVRTFLDQEQYVNIVFSDTGCGI-PRED 598 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + R+ + ++ L Sbjct: 599 QERIFEPFFTTKTKGTGLGLAITRQIVEMHHGRIAIDSEVGRGTDVTVRLP 649 >gi|317127293|ref|YP_004093575.1| histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315472241|gb|ADU28844.1| histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 577 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQ 51 +N + S + L + I H++ +P+ AI ++L + E + Sbjct: 344 KENENLMIRSEKMNIAGELAASIAHELRNPLTAIKGFFKMLRDTEKYKERYFQIIEDELS 403 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKID 110 I S + K V+ + + + + ++ ++VS Sbjct: 404 RIEQISSELLTLAKPHTEKRQDQNIVNLIEEVKFLLSSQSNMKCIEVILEVSSNELYVNC 463 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +NL A ++ GG + I V+ N + +G+ E ++I + Sbjct: 464 EVTKIKQVFINLVKNAIEAMQEGGNIKIKVERIGNIIQAKVIDHGSGI-PEELLSKIGEP 522 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + + + L Sbjct: 523 FYTTKEKGTGIGLMVCYQIIESHGGTIHFDSKVNIGTTFTITLP 566 >gi|229541292|ref|ZP_04430352.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325712|gb|EEN91387.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 358 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 69/214 (32%), Gaps = 10/214 (4%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMR 68 + +V L + I H+I +P+ +I L+L+ I+ + +++ + + Sbjct: 132 EQLSMVGQLAAGIAHEIRNPLTSIKGFLQLMQAGVIDTGNYLDIMQNEIERIEMISSELL 191 Query: 69 L--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L +E + V S + ++ + Sbjct: 192 FLGRPKASDMKVCCLQTLLDEVLVLMETQSYGKNIQIETVFPSQPIFISCDDSKMKQVFV 251 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL ++ GG +T+ + ++ +++ G PEK +I + + Sbjct: 252 NLIKNGLEAMEEGGTLTVELSVAEERAAVAIRDEGIGI-PPEKLEKIGQPFYTTKERGNG 310 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ + + V + +L Sbjct: 311 LGLMVCYQIVREHNGDISIDSKPGEGTVFTVVLP 344 >gi|300087415|ref|YP_003757937.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527148|gb|ADJ25616.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 506 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQ 51 A L S L ++ L + + H+I +P+ I E L +D++ ++ Sbjct: 260 AAERESQLQSELNMSGRLASVGELAAGVAHEINNPLTGIIGFSERLMRKCRDDKMTTDLK 319 Query: 52 LIRLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSW 104 I + L F R SVD L + ++ E + ++ Sbjct: 320 RIHSEAQRAAKVVQNLLTFARQREPRKESVDINEILTESLELREYELRQLGIQVVTHLAD 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++ +NL + A ++ +G ++ +S + + ++ NG + Sbjct: 380 LPNIEADYYQLEQVFVNLIINAEQAITASGKGDRLIVSSGEMDGNIVVAVADNGPGIKPR 439 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + E+ R+ + +L Sbjct: 440 D-QERIFDPFFTTRGDAGGTGLGLSICHGIVEEHGGRISVTSELGEGTTFTVILP 493 >gi|298505082|gb|ADI83805.1| sensor histidine kinase, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 655 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 57/231 (24%), Gaps = 19/231 (8%) Query: 2 AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52 +N + +L L S + H+I +P+G I L+ E + + Sbjct: 420 RQNKEMEASLAQQGKMASLGVLSSGVAHEINNPLGVILGYASYLESKITEGDPTYKYIHE 479 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107 I+ S ++ + + D+ V + + Sbjct: 480 IKRESKRCKKIVQDLLSYARTPKPALEPTDINDLLGQIVGFAANHTDMHHVTVVREFAPD 539 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163 + + +I + + + D + G E Sbjct: 540 LPPVMADGDQIRQVAINLILNAGSAMTAGGVLTVRTFLDQEQYVNIVFSDTGCGI-PRED 598 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + R+ + ++ L Sbjct: 599 QERIFEPFFTTKTKGTGLGLAITRQIVEMHHGRIAIDSEVGRGTDVTVRLP 649 >gi|134299002|ref|YP_001112498.1| nitrogen-specific signal transduction histidine kinase NtrB [Desulfotomaculum reducens MI-1] gi|134051702|gb|ABO49673.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 578 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 69/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + L + + + H+I +P+ ++ +L+ ++ + + + Sbjct: 345 LRRQEARIREQEKLAVVGQMAAGMAHEIRNPLTSVRGFAQLMSEKMAEEQNPYKEFMEIM 404 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTG 106 F+ + + Q+ V + + Sbjct: 405 IQEIDQADSFINNFLQLARPKPPKMQACSLNQLILNFIKIFESQAFLQGVKIGIDLGEIP 464 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKF 164 + + ++LLNL A ++ G +TI+ + + E S++ NG + Sbjct: 465 TIVIDKDQIKQVLLNLCQNALQAMNMQGTITIATRFHAAEKEVSLSVRDNGPGI-PGDNI 523 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + +++ R+ E D L Sbjct: 524 DKLGTPFFTTKDKGTGLGLSISYTIVDKHQGRIEVESTIDEGTCFKVYLP 573 >gi|308067476|ref|YP_003869081.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|297185565|gb|ADI24139.1| sensor histidine kinase kin689 [Paenibacillus polymyxa] gi|305856755|gb|ADM68543.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 579 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53 ++ N + LV + + I H+I +P+ + L+L+ E E E + Sbjct: 339 RSELGNFERLSLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPESLNHYYRIVMEELDRA 398 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LS 112 + + + D + L + + +++ + Sbjct: 399 NGIINDFLSLAQNRIVEKEQCHLHDIIRELTPLLWADANLRGQTIELKLEDHVTMLHLNP 458 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +E ++LLNL A ++ G +TIS + + +K G + ++ Sbjct: 459 KEIKQLLLNLSRNAMEAMGEKGVLTISTHEEGDFVELEVKDTGPGIPQKQL-EKLFQPFY 517 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + ++ + L + Sbjct: 518 TTKTKGTGLGLALCQSIVERHHGTIAVDSVEGMGTQFNVRLRR 560 >gi|261406771|ref|YP_003243012.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261283234|gb|ACX65205.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 520 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICF-NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSM 58 M M +V L + + H+I +P+ +I ++L ++I Sbjct: 296 MRSQEEMIRTEKMKMVGELAAGMAHEIRNPLTSIKGFIQLSKNQSYNIQPWYEVIMGEIT 355 Query: 59 SAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKID 110 V+SL + + A + + Sbjct: 356 RVGELTAEFLHFSKPHASNMRVESLSDCMTRVYSLCESEAASHGHVFLLDLSDEPIQIVM 415 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++L+NL + ++ G V IS++ + + ++ G E +I D Sbjct: 416 DRDKIIQVLINLIRNSFQAMENTGSVRISLKAEEGMAVVQIEDTGKGI-ADENLAKIFDP 474 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R+ + + Sbjct: 475 FYTTKEEGTGLGLSLCQKIVEDHGGRITVHSELGIGTTFTLRMP 518 >gi|121533649|ref|ZP_01665476.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermosinus carboxydivorans Nor1] gi|121307640|gb|EAX48555.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermosinus carboxydivorans Nor1] Length = 399 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 18/230 (7%) Query: 3 KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQL 52 + + + ++ L AL L + H+I +P+ +I +L+ + D + Sbjct: 144 REVRHRMHHLETLAALGQLAAGTAHEIRNPLTSIRGFTQLIQTRALRRNDATTADYCRLI 203 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------ 106 ++ I + LA T + L + + VI ++ Sbjct: 204 MQEIDHINNILTDILSLARPTTRQLSLLNIVKIVHDVIAFMYGEAILSGITLRPELPPEE 263 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++L+N+ A ++ GG +T+SV L G E Sbjct: 264 LWVQGHIDKLKEVLINICRNAFQAMGPGGVLTLSVAADTATVKIVLADTGCGM-TKEVMD 322 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 QI + + + HE+ + E + LL + Sbjct: 323 QIFTPFFTTKETGTGLGLAICQQIMHEHGGDIQVESTPGQGSTFTLLLPR 372 >gi|153006988|ref|YP_001381313.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030561|gb|ABS28329.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 1519 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 + + + L AL L + + H++ +P+G I NSL LL G ++ ++ Sbjct: 1280 LGRAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRLLRPAGDAKLLLDIVG 1339 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R + + + V E Sbjct: 1340 EEADRLNRIVGDLLDFARPSDPQLRPERLERVVEEAIHTALAQNPQGVEVSRDVDPELPA 1399 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + + ++N+ + A ++PRGG++T+ V+ ++ G E +I Sbjct: 1400 VPIDARLVRQAVINVAVNAIQAMPRGGRLTVRVRREDGTAALDVEDTGPGI-PDEVKHRI 1458 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + L+ + L Sbjct: 1459 FEPFFTTKASGTGLGLAVVKRIVDGHGGELVVHSRPGAGTLFRIRLP 1505 >gi|253700606|ref|YP_003021795.1| histidine kinase [Geobacter sp. M21] gi|251775456|gb|ACT18037.1| histidine kinase [Geobacter sp. M21] Length = 672 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 19/231 (8%), Positives = 58/231 (25%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + + + L ++ + + H+I +P+ I + E+L+ E + +I Sbjct: 427 LLQTQADLARAEKLADLGIVAAGVAHEINTPLAIIRGNAEVLEMCLPPEHPNHEEVDIIS 486 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109 + + + + + +I Q+ VQ + Sbjct: 487 MQTERMAKIVGNLLTFARQKSLNQREFMVHEILDDIVAQIRHQVPMDAISVQWEYDMNLG 546 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ + ++ T N ++ G E Sbjct: 547 TVIGDTDQLRQVFSNIILNAVQAMLPKGGTLRLTTRPHGPGNGCEVEIRDTGKGI-PAEH 605 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + ++ + L Sbjct: 606 LEKIFTPFFTTRDSGTGLGLSVSYGIVRDHGGDIQVSSTPGAGTCFKIFLP 656 >gi|295696526|ref|YP_003589764.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412128|gb|ADG06620.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 467 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 68/231 (29%), Gaps = 19/231 (8%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 + LS + L + + H++ +P+ I LEL+ + E E + I+ M Sbjct: 215 EMALQLSRIEETRRHLVADVAHELRTPLTIIQGQLELIQQGVKRAEPETLLPIQDEVMRL 274 Query: 61 IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + +T + D Q+ + + ++ S + Sbjct: 275 TRLVGDLHQLSLAEAGRLPLEKTWTDLTALAGRIVDNFQIEAEAKEITLSLEASDSIPVY 334 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++++NL A P GG + I V+ +E I ++ G R Sbjct: 335 VDPHRMTQVIVNLVGNALRYTPTGGTIRIVVRQEGSEAILAVSDTGPGIRPEHLPHIFDR 394 Query: 170 GNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + R+ E + L K Sbjct: 395 FFRSDEARSREEGGTGLGLAIAKEFVEAHGGRIGAESRPGEGTTFTVRLPK 445 >gi|197118621|ref|YP_002139048.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087981|gb|ACH39252.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 672 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 67/231 (29%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + + + L ++ + + H+I +P+ I + E+L+ E +++I Sbjct: 427 LLQTQADLARAEKLADLGIVAAGVAHEINTPLAIIRGNAEVLEMCLPPEHPNHEEVEIIS 486 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-- 112 + + + + + +I I I + + D++ Sbjct: 487 MQTERMAKIVGNLLTFARQKSLNQREFMVHEILDDIVTQIRHQVPMDAISVQWEYDMNLG 546 Query: 113 ------RERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ N+ + A ++ G ++T N ++ G E Sbjct: 547 AVTGDTDQLRQVFSNIILNAVQAMLPEGGTLRLTTRPHGPGNGCEVEIRDTGKGI-PAEH 605 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + ++ + +L Sbjct: 606 LEKIFTPFFTTRDSGTGLGLSVSYGIVRDHGGDIQVSSTPGAGTCFKIVLP 656 >gi|308270670|emb|CBX27281.1| hypothetical protein N47_I07010 [uncultured Desulfobacterium sp.] Length = 488 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 69/230 (30%), Gaps = 20/230 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 M K++ L L ++ L + + H+I +P+ I + L L++ + + ++ Sbjct: 257 MQKSM---LQQDKLASIGRLAAGVAHEINNPLTTILTTAMLIQEDLEKDNPIYQELDIVS 313 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109 ++ + + + + +I + + + + S Sbjct: 314 SETLRCRKIVTSLLNFARQSKPEKKQYDICEIMEECALLTRKQAAFKNITIHFSCVDSIP 373 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164 L ++ +I + + + K++ I + G E Sbjct: 374 KLFFDKGQIEQAVINLILNATDAVDPGGSITLSVSLNPKKDQVIIKVADTGKGI-PFELI 432 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + D + + ++ + + + +L Sbjct: 433 DKIFDPFFSTKDDGTGLGLSITSGIIEQHGGAIYVSSKPGYGTTFTIVLP 482 >gi|218289066|ref|ZP_03493303.1| signal transduction histidine kinase, nitrogen specific, NtrB [Alicyclobacillus acidocaldarius LAA1] gi|218240891|gb|EED08069.1| signal transduction histidine kinase, nitrogen specific, NtrB [Alicyclobacillus acidocaldarius LAA1] Length = 457 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 69/228 (30%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + L + + H+I +P+ I L+LL++ +++ I M Sbjct: 217 LLNQHTERIERIATIGRLAAGVAHEIRNPLTTIKGFLQLLEQRLERADMLDEIAYIRMMM 276 Query: 61 II-------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 K +A+ + L L V+ +V E Sbjct: 277 QEIERVNALVTELLLLSKPQDMAWTTVSVSEVLGHLRPWLDEEARKRGVETVYEVPADLE 336 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ +L A ++ +GG++TI + + G + F +I Sbjct: 337 LQADRGMMEQLFAHLARNAIEAMEKGGRLTIRGRAEEGRVELEFSDTGPGIPYY-LFDRI 395 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + ++ ++ + L K Sbjct: 396 FDVFYTTKEKGTGLGLAICQRIVADHGGQIRV-SSKGFGTTFTVSLPK 442 >gi|226314530|ref|YP_002774426.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226097480|dbj|BAH45922.1| probable two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 606 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 14/223 (6%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 + S L L + H+I +P+ I+ ++LL+ + + + LI Sbjct: 379 QEYLNQSEKLAMVGQLAAGAAHEIRNPLTVIYGFIQLLEQRLSDQERDLYYLPLILQEIE 438 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDL 111 + + + + + L + I + + + + Sbjct: 439 RVNRIVTELLMLSKPSKPDYREVALTGVIHSILPLMNAEAMLHGIEIVDRCDPSIRIHVD 498 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + +ILLNL + ++ GG ++I + ++ G E +I D Sbjct: 499 VEQLKQILLNLMKNSIEAMKDGGVLSIENRLDDQAVHIHVRDTGEGI-PQEYLVRIFDPF 557 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + L + L Sbjct: 558 FSLKEDGTGLGLPISRRMVENHGGELHVNSKLGKGTEIIITLP 600 >gi|260892097|ref|YP_003238194.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ammonifex degensii KC4] gi|260864238|gb|ACX51344.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ammonifex degensii KC4] Length = 621 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 14/226 (6%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57 + + + L AL + + H+I +P+ I +++ + L+ Sbjct: 381 RRRLEERVQRQERLAALGKFVAGVAHEIRNPLTTISGYIQMWQRYGKPTPHSLPLVAQEV 440 Query: 58 MSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--- 110 L F R A D + + Q I +V+VS + E Sbjct: 441 RRLNAIVDKLLFFARPAEMKLQPYDLNQLVVQVLQFIGHAQDNKVKVEVSLSPELPTVLL 500 Query: 111 LSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+N+ ++ ++P GG V+ + + ++ G PE +I Sbjct: 501 DPEQMRQVLMNIIYNSYQAMPNGGLLSVSTELTSDGKYAVVTVGDTGCGI-PPENLPRIF 559 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E + L Sbjct: 560 DPFFTTKARGSGLGLALAHEIVTAHGGHIEVESKVGVGTTMRVYLP 605 >gi|253701298|ref|YP_003022487.1| histidine kinase [Geobacter sp. M21] gi|251776148|gb|ACT18729.1| histidine kinase [Geobacter sp. M21] Length = 656 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 K + NL + +L L S + H+I +P+G I +++ + I+ Sbjct: 423 KELEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYIEKKLSPDDPNYRFIHEIKR 482 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110 S ++ + V L + + I V+ S+ + Sbjct: 483 ESKRCKKIVQDLLSYARTPQPVLEPTDLNALLEQIVDFAANHTDMHHVSVEKSFDPTLPE 542 Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ + + + V + N NG E + Sbjct: 543 IMVDGDQLRQVAINLILNAGAAMQRGGKLVVSTQNGEDNCVSLKFSDNGAGI-AAEHMER 601 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ ++ E + L Sbjct: 602 IFEPFFTTKVKGTGLGLAITRQIVEQHHGKIGIESEIGAGTTVEVRLP 649 >gi|313903520|ref|ZP_07836911.1| PAS/PAC sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313466341|gb|EFR61864.1| PAS/PAC sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 325 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 18/230 (7%) Query: 2 AKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVM 50 + L S L A+ L + H+I +P+ AI ++LLD G D V+ Sbjct: 54 TQERELELRARRSERLAAVGQLAAGAAHEIRNPLTAIKGFIQLLDRRLEGEAAGYIDIVL 113 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106 Q I L R VD L + +I A V Sbjct: 114 QEIERIETIVNDLLLLARQPRLRLRRVDVGALLQRLVDMIRLDQAARSCVVELRVREPLP 173 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKF 164 + + ++ LNL ++P GG + I + + ++ G PE Sbjct: 174 PVVADESQLRQVFLNLIRNGLDAMPEGGCLQIRAFANPAAGTVVVEVEDRGPGI-PPEHL 232 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + E + +L Sbjct: 233 GRIFDPFFSTKEGGTGLGLAVSYGIVRSHGGHIDVESEPGRGTRMRVVLP 282 >gi|197117910|ref|YP_002138337.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087270|gb|ACH38541.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 656 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 K + NL + +L L S + H+I +P+G I +++ + I+ Sbjct: 423 KELEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYIEKKLSPDDPNYRFIHEIKR 482 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110 S ++ + V L + + I V+ S+ + Sbjct: 483 ESKRCKKIVQDLLSYARTPQPVLEPTDLNALLEQIVDFAANHTDMHHVSVEKSFDPSLPE 542 Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ + + K V + N NG E + Sbjct: 543 IMVDGDQLRQVAINLILNAGAAMQKGGKLVVSTQNGEDNCVSLKFSDNGAGI-AAEHMER 601 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ ++ E + L Sbjct: 602 IFEPFFTTKVKGTGLGLAITRQIVEQHHGKIGIESEIGAGTTVEVRLP 649 >gi|322419500|ref|YP_004198723.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125887|gb|ADW13447.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 668 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 60/231 (25%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 +A+ + L ++ + + H+I +P+ I + E+L+ E +++I Sbjct: 427 LAQTQADLARAEKLADLGIVAAGVAHEINTPLAIIRGNTEVLEMCLPSDHPNHEEVEIIS 486 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109 + + + + ++ Q+ VQ + Sbjct: 487 EQTERMAKIVGNLLTFARQKSLNQRQFVVHEVLDDIVAQIRHQVPMDAISVQWEYDLNLG 546 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLARFPEK 163 ++ + ++ + ++ N I + G PE Sbjct: 547 RVTGDTDQLRQVFSNIILNAVQAMLPQGGTLRLITRPHGPGNGCIVQICDTGKGI-SPEH 605 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + ++ + L Sbjct: 606 QEKIFTPFFTTKESGTGLGLSVSYGIVKDHGGDIRVSSRPGMGTCFEIELP 656 >gi|253700575|ref|YP_003021764.1| histidine kinase [Geobacter sp. M21] gi|251775425|gb|ACT18006.1| histidine kinase [Geobacter sp. M21] Length = 661 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 70/231 (30%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + + L A+ L + + H+I +P+ I + ELL ED + Sbjct: 426 LVQTREELVRVEKLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEDAPIREEVDTIF 485 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 Q ++ LKF R G+V L +I Q+ + + Sbjct: 486 QQVKRVERIVSNLLKFARREQMEAGTVRLNELLHEIVGQIGHQVSLEGIEIVEQYAESVA 545 Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++ + ++ V + + + G E Sbjct: 546 QVEGDADQLRQVFTNLVLNAVQAMPAGGVLSVRTRPLEPERSYEVKVADTGVGIAL-ENL 604 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + + + E+ + E + D + +L + Sbjct: 605 RQVFNPFYTTKANGTGLGLSVSYGIVREHGGLIDVESVPDGGSTFTVVLPR 655 >gi|108762754|ref|YP_631541.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108466634|gb|ABF91819.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 747 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 61/228 (26%), Gaps = 24/228 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L AL + + + H+I +P+GAI + + LD V + E + + + + Sbjct: 465 ERDRLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPVHYQGEDAEFLEVIVEEVNRLNGVV 524 Query: 68 RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Y + D + ++I++ + + + V + + ++ Sbjct: 525 TAFLDYARPLKQSFGTTDLNEVVTRTMRLIQNDVPSNLHLAVELDLMLPRVDGDAEQLKQ 584 Query: 121 NLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 L + + + + + NG ++ Sbjct: 585 VLINLVQNAVQALETREGRISVRTEKPERFGELRSAGAEFVEVRVSDNGPGI-PSDQHPH 643 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + L Sbjct: 644 IFVPFYTTKQKGTGLGLAICQRIVKNHGGSISVQSKMGEGTTFVIRLP 691 >gi|85857964|ref|YP_460166.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721055|gb|ABC75998.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 593 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 67/220 (30%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63 S L A+ L + + H+I +P+ +I +L E + + ++ Sbjct: 360 RSRRLAAIGSLAAGVAHEIRNPLSSIKGFATVLRERHRENPEDQRIADIMISEVERLNRV 419 Query: 64 LKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + + I ++ + E ++ + DL + Sbjct: 420 IGQLLEFSRPLTMNRKDSAIEPILQHTVKMIEEQARKKGIDIRTEFPEGVPDLLIDPDKM 479 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ LNL + A ++ GG +++ + + + G R E +I D + Sbjct: 480 TQVFLNLSLNAVNAMDTGGTLSLKISRPEARTIRVDVADTGTGIRPDELG-RIFDPYFTT 538 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ V S L Sbjct: 539 RPSGTGLGLPIAQRIVEAHGGKIAVASQQGKGTVFSVFLP 578 >gi|91204351|emb|CAJ72004.1| similar to two-component sensor histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 769 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 66/231 (28%), Gaps = 19/231 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIR 54 K + L + L A+ L + + H+I +P+G + N ++++ E ++L+ Sbjct: 534 RKRMEMQLIQTERLAAVGELAAGVAHEINNPLGGLLNFVKMMSREPENISQNKEFLELMA 593 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109 + +K + + + + + ++ Sbjct: 594 EGLKRIEVIVKQLMAFSRPYSTHMDNHCVNTVVRNSIRFLDHRIKEQRITLEERLFSGLP 653 Query: 110 DLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEK 163 ++ + +I + + +L T K+ + G + Sbjct: 654 EIYADADQISQVIINILVNALDCMDDGGKLTIATGHCNHLKSSIHIKITDTGPGIN-DDI 712 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I + + + + ++ + + S L Sbjct: 713 ASRIFNPFFTTKEMGSGLGLAISKRIVEDHDGNIFVDSKPGKGTTFSICLP 763 >gi|329930884|ref|ZP_08284277.1| sporulation kinase A family protein [Paenibacillus sp. HGF5] gi|328934501|gb|EGG31009.1| sporulation kinase A family protein [Paenibacillus sp. HGF5] Length = 480 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 13/223 (5%) Query: 4 NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSA 60 + S L L + I H+I +P+ +I+ ++LL +E ++I Sbjct: 257 EEDRVMQSEKLTTAGQLAAGIAHEIRNPLTSINGFVKLLRSAERSNELYFEIIESELKRI 316 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111 + + + +G +D L I +++ Sbjct: 317 ELIVNELLVLSKPQGAHVSGPIDVSAILDQIITLMKVQAALKNIEIIPHYPLIPIYVQGE 376 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +NL A ++ GG +T+ + S E ++ G ++ + Sbjct: 377 VNQLKQVFINLLKNAMEAMNHGGSITLDIVHSGPEVQIIVQDEGVGM-TQDQIQSLGQPF 435 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + H + + E DH + L Sbjct: 436 FTTKDTGTGLGLMITKNIIHNHGGTMNVESTPDHGTTFTIHLP 478 >gi|86157053|ref|YP_463838.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773564|gb|ABC80401.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 526 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 63/227 (27%), Gaps = 16/227 (7%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 + + S L L + + + H++ +P+ ++ S+ELL + + + +L+ + Sbjct: 292 RTMEQAFQRSERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAAPDGDERRLLDIVLR 351 Query: 59 SAIIRLKFMRLAFGYTGSVDSLI---------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 A + + + + + Sbjct: 352 EASRLDELVTEFLRFARPAPLRPGSVELSGLLDDALRVFAHDPAAVGLLVARSLDPAPAA 411 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQI 167 + +++ NL A +L G I V F++ +G E +I Sbjct: 412 CDPDQIRQVVWNLLRNAAQALGDGRGARIEVSCGVEDGGAWFAVGDDGPGIPAAEL-ERI 470 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + L Sbjct: 471 FLPFHTTKERGTGLGLAVVQRIVDAHGGRVEVRSTPGEGARFTVHLP 517 >gi|189425688|ref|YP_001952865.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421947|gb|ACD96345.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 510 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 60/231 (25%), Gaps = 19/231 (8%) Query: 2 AKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +N + +L L S + H+I +P+G I L+ + + Sbjct: 274 QRNQEMESTLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYLEGKLSPDDPHYKYIHE 333 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107 I+ S ++ + + L ++ I ++ + Sbjct: 334 IKRESKRCKKIVQDLLSYARTPRPTLEMTDLNELLTEIVEFAANHTDMRGVTIKPEFEAN 393 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ + + + + + S + G E Sbjct: 394 LPRVLLDGDQLRQVAINLILNAGGAMPEGGTLQIRTEAGPERTVKISFQDTGCGI-PRES 452 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + E ++ +L Sbjct: 453 LEKIFEPFYTTKARGTGLGLAITRQIVEMHHGDITIESEAGKGTTVTVILP 503 >gi|323703046|ref|ZP_08114701.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531940|gb|EGB21824.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 582 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 72/230 (31%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56 + + L + + + H+I +P+ ++ +L+ E + + + + Sbjct: 349 LRRQEARIREQEKLAVVGQMAAGMAHEIRNPLTSVRGFAQLMKEKIGEQNNPFKEYVEIM 408 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTG 106 F+ + + + +I++F+ + + + Sbjct: 409 IQEIDQADSFINNFLQLARPTPPKMQVCSVNDLIKNFVRIFENQAFLQGTKVLTDLREVP 468 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKF 164 + S + ++LLNL A +L +GG +T S Q E + NG + Sbjct: 469 PLVIDSAQIKQVLLNLCQNALQALGQGGTLTLASSYQADTREIRVDVIDNGPGIPPEDL- 527 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + +K R+ + S L Sbjct: 528 DKIGTPFYTTKDKGTGLGLSISYAIVDRHKGRVEVDSKVGQGTRFSIYLP 577 >gi|322418879|ref|YP_004198102.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125266|gb|ADW12826.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 656 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 68/228 (29%), Gaps = 17/228 (7%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 K + NL + +L L S + H+I +P+G I +++ + + I+ Sbjct: 423 KELEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYIEKKLTPEDPNYKFIHEIKR 482 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110 S ++ + + + D+ + I V+ ++ Sbjct: 483 ESKRCKKIVQDLLSYARTPQPLLEETDINDLLEQIVDFAANHTDMHHVTVKKNFDRTLPQ 542 Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ + + + V + + + NG PE + Sbjct: 543 VMVDGDQLRQVAINLILNAGAAMQRGGELVVSTEPGGEQWVSLKFRDNGAGI-SPEHMER 601 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ ++ E + L Sbjct: 602 IFEPFFTTKVKGTGLGLAITRQIVEQHHGKICIESGIGAGTTVEVRLP 649 >gi|260892433|ref|YP_003238530.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260864574|gb|ACX51680.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 611 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 16/226 (7%) Query: 4 NICFNLS-----SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRL 55 L L +L L + + H+I +P+ AI+ L+L + G ++ + +R Sbjct: 373 TEQVRLQREMRRQERLASLGRLVAGVAHEIRNPLTAINCYLQLWQKSGRFPEKPLNTMRE 432 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKID 110 ++ + + + + F +++ E Sbjct: 433 EINRLDNLVEKLLCLAKPAEVKKVPYEVNRLVRDSLRFFEEVVGIRIETDFASDLPEVPL 492 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIV 168 + ++L NLF A ++ GG +T+ + + G I Sbjct: 493 DPEQMGRVLQNLFFNACEAMAGGGVLTVRTYKAGDGRHAVIEVADTGCGIPPEHLKE-IF 551 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + R+ E + L Sbjct: 552 EPFFTTKPQGTGLGLSLAKEVVEAHGGRIEVESELGKGTTMRIYLP 597 >gi|148265415|ref|YP_001232121.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398915|gb|ABQ27548.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 662 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 70/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + K + + L A+ L + + H+I +P+ I + ELL E + + + Sbjct: 430 LVKTRQDLVRAEKLAAIGELAAGVAHEINNPMAIIRGNTELLQMSIPPEADNREEVDTIF 489 Query: 58 MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 LKF R G+V L +I QV ++ + + Sbjct: 490 QQMGRVERIVANLLKFARQEQKNLGTVFINRLLREILSQVGHQVPLSGINIREEYAPDIP 549 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKF 164 ++ + ++ + ++ + + ++ GN E Sbjct: 550 EIEGDSDQVRQVFINLVINAVQAMPGGGDLTITTGIDSEAGKCEITVTDTGNGIAL-ENL 608 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + + + ++ R+ + + +L Sbjct: 609 EQIFNPFFTTKAGGTGLGLSVSYGIIRDHGGRIEVRSEPEKGSMFRVVLP 658 >gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 827 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSM 58 +++ + + + + + H++ +P+ AI ELL I E +++I + Sbjct: 587 RDVTPQKDAERIKSEFIAAVSHELRTPLAAIMGFAELLTSGEIPLEEGQEFLRIIYDNGR 646 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGE 107 + + Y V L + V+ ++ Sbjct: 647 RLKNMVDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQLSQVEFHREIPPLPP 706 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P+GG+VT+ + ++ G E+ Sbjct: 707 VEADPDRIGQVMGNLLSNAFKFTPKGGRVTLRAMLEGDSLKIEVEDTGPGIPESERSRLF 766 Query: 168 VDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y + + R+ E S L Sbjct: 767 QRYGRTQSAVSRGVSGTGLGLYISKAIVEAHGGRIWVESEVGKGTTFSLTLP 818 >gi|115378951|ref|ZP_01466084.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|310818264|ref|YP_003950622.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115364027|gb|EAU63129.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391336|gb|ADO68795.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 639 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47 M + + + L ++ L + + H+I +P+ A+ E L E Sbjct: 405 MKELEKRIIHAEKLASIGQLAASVVHEINNPMTAVATYAEALLMNARLRPNSTAEQDKLK 464 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + + + R A V L E ++ K Sbjct: 465 KIRESSDRILRFTRDLVSYARPAKEKPEQVPLESILEQAVSYCEHVVSHAKVNVERDYAP 524 Query: 108 KIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ +NL A ++ GGKV +S + + + ++ G Sbjct: 525 LPPVSAVRANLVQVFVNLITNACHAMVSGGKVMLSTRRDGQDAVVLVRDTGTGIDPKHLG 584 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + V + + R+ + V + L Sbjct: 585 -HIFDPFFTTKEEGKGTGLGLSIVQGIVESHGGRITVDSTLGEGTVFTLRLP 635 >gi|261407510|ref|YP_003243751.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261283973|gb|ACX65944.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 480 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 13/223 (5%) Query: 4 NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSA 60 + S L L + I H+I +P+ +I+ ++LL +E ++I Sbjct: 257 EEDRVMQSEKLTTAGQLAAGIAHEIRNPLTSINGFVKLLRSAERSNELYFEIIESELKRI 316 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111 + + + +G +D L I +++ Sbjct: 317 ELIVNELLVLSKPQGAHVSGPIDVSAILDQIITLMKVQAALKNIEIIPHYPLVPIYVQGE 376 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +NL A ++ GG +T+ + S E ++ G ++ + Sbjct: 377 VNQLKQVFINLLKNAMEAMNDGGSITLDIVHSGPEVQIIVQDEGVGM-TQDQIQSLGQPF 435 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + H + + E DH + L Sbjct: 436 FTTKDTGTGLGLMITKNIIHNHGGTMNVESTPDHGTTFTIHLP 478 >gi|322419476|ref|YP_004198699.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125863|gb|ADW13423.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 662 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 + + L L A+ L + + H+I +P+ I + ELL E E + I Sbjct: 431 LVQTREELLRVEKLAAIGELAAGVAHEINNPMAIIRGNTELLQLCVPEDAPNREEVDTIF 490 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106 LKF R G V L +I + ++++ V Sbjct: 491 QQVKRVERIVSNLLKFARREQMEHGDVRLNELLHEIVGQLGHQVSLEGIEVVELYAGEVA 550 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKF 164 + ++ NL + A ++P GG + I + + G E Sbjct: 551 VVEGDGDQLRQVFTNLVLNAVQAMPEGGVLCIKSAPVGSGDLYEVKVSDTGVGIEL-ENL 609 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + + + E+ + E + S +L + Sbjct: 610 RQVFNPFYTTKANGTGLGLSVSYGIVREHGGCIDVESVPGQGSSFSVILPR 660 >gi|187734822|ref|YP_001876934.1| signal transduction histidine kinase, nitrogen specific, NtrB [Akkermansia muciniphila ATCC BAA-835] gi|187424874|gb|ACD04153.1| signal transduction histidine kinase, nitrogen specific, NtrB [Akkermansia muciniphila ATCC BAA-835] Length = 383 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 72/233 (30%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIR 54 K NL + L AL L + + H+I +P+ +I L+LL + ++ +L++ Sbjct: 138 KKNAENLEAERLNALTLLAAGVAHEIGNPLNSIGLHLQLLARKAKQLPPKYRTDMEELLK 197 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--------FIAVDKRVQVSWTG 106 + ++ + +IE ++ + ++ Sbjct: 198 TAESETTRLDVILKQFLQAIRPTRPIREPYNIETILMEVLKLLEPEIQQRGIQINTDLQP 257 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE 162 LS + +I + + + ++ + + ++ G PE Sbjct: 258 SLPILSLDPVQIKQVFYNLIKNAYQSIPPEGGTILLKSGYTDDSVFVTVADTGCGI-SPE 316 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + V + E+ + ++ L + Sbjct: 317 VMGSIYEPFLTTKSTGSGLGLLIVRRIVKEHGGSITLASQPGQGTTITVFLPR 369 >gi|121533921|ref|ZP_01665747.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121307432|gb|EAX48348.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 514 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 74/227 (32%), Gaps = 15/227 (6%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K + + + L A+ + + + H+I +P+ A+ +LL E E + + Sbjct: 280 RKKLEAQVQRAERLAAIGEVAAGLAHEIRNPLMAVKGFAQLLKEDITPAEQAEYSDIIVR 339 Query: 59 SAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110 + + + D + ++E + + Sbjct: 340 ETERLDRLIEQLLCFARPAATQVAPTDVKEVVESTLLLVETKRLRSHIEIIRDLDRPLPL 399 Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 S + ++LLN+ + A ++ + G + +S + + ++ G PE +++ Sbjct: 400 VLVDSEQLKQVLLNIILNAIQAIEQKGVIRVSANQAADGLHLTVADTGCGI-APENMSKL 458 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + L R+L E + +L Sbjct: 459 FDPFFTTKENGTGLGLAVAHRLVENWNGRILVESTPGQGSAFTLVLP 505 >gi|197121076|ref|YP_002133027.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170925|gb|ACG71898.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 525 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 M + S L L + + + H++ +P+ ++ S+ELL G E ++ ++ Sbjct: 294 MEQAFQ---RSERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVL 350 Query: 55 LSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108 + + VD L D +V + A V + Sbjct: 351 REAARLDELVTEFLRFARPAPLRPGAVDLASLLDDALRVFANDPAAAGLVLSREIGPAPA 410 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + +++ NL A +L G F+++ +G E+ +I Sbjct: 411 ACDPDQIRQVVWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAER-ERI 469 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + L Sbjct: 470 FLPFHTTKERGTGLGLAVVQRIVDAHGGRVEVRSAPGQGARFTVHLP 516 >gi|320104996|ref|YP_004180587.1| histidine kinase [Isosphaera pallida ATCC 43644] gi|319752278|gb|ADV64038.1| histidine kinase [Isosphaera pallida ATCC 43644] Length = 312 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 18/217 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFMRL 69 A + + H+I +P+ + +L+LL E + + I + + Sbjct: 53 ARIAGGLAHEIRNPLSTMRLNLDLLAEEFRGSDSIRDRRALTKIERLRKETLRLQNVLED 112 Query: 70 AFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKI 118 + + + + A + V + + Sbjct: 113 FLRFAHLERIQPVDQPLAAVVNEVCDFWEPQAQAHGIVVRVYHDPQPSCSPLDADLFKQA 172 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +LNL + A ++P GG++ + + + N+ + G ++ + + Sbjct: 173 ILNLLLNAQQAMPDGGELMLITRRAGAWNVLEVVDTGVGIPAS-LRDKVFEPFQTTKPGG 231 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + R+ E + L + Sbjct: 232 SGLGLPMVRRIVEAHGGRIAFESEPGKGTKFTIWLPR 268 >gi|220915778|ref|YP_002491082.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953632|gb|ACL64016.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 525 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 M + S L L + + + H++ +P+ ++ S+ELL G E ++ ++ Sbjct: 294 MEQAFQ---RSERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVL 350 Query: 55 LSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108 + + VD L D +V + A V + Sbjct: 351 REASRLDELVTEFLRFARPAPLRPGAVDLASLLEDALRVFTNDPAAAGLVLSREISPAPA 410 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + +++ NL A +L G F+++ +G E+ +I Sbjct: 411 ACDPDQIRQVVWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAER-ERI 469 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + L Sbjct: 470 FLPFHTTKERGTGLGLAVVQRIVDAHGGRVEVRSAPGQGARFTVHLP 516 >gi|108759665|ref|YP_634982.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463545|gb|ABF88730.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 631 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 21/232 (9%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIED 47 K + + + L ++ L + + H+I +P+ A+ + L + Sbjct: 397 KELEKRIIHAEKLASIGQLAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLR 456 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++++ + + R A V + E +A + E Sbjct: 457 KILESSHRILRFTRDLVSYARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIE 516 Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ +NL A ++P GG V ++ + + ++ G Sbjct: 517 LPPLSAVRANLVQVFVNLITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGIEPKHL- 575 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + RL E L Sbjct: 576 QRIFEPFFTTKPEGRGTGLGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 627 >gi|27804857|gb|AAO22894.1| sensor protein [Myxococcus xanthus] Length = 638 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 21/232 (9%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIED 47 K + + + L ++ L + + H+I +P+ A+ + L + Sbjct: 404 KELEKRIIHAEKLASIGQLAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLR 463 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++++ + + R A V + E +A + E Sbjct: 464 KILESSHRILRFTRDLVSYARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIE 523 Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ +NL A ++P GG V ++ + + ++ G Sbjct: 524 LPPLSAVRANLVQVFVNLITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGIEPKHL- 582 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + RL E L Sbjct: 583 QRIFEPFFTTKPEGRGTGLGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 634 >gi|148263490|ref|YP_001230196.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396990|gb|ABQ25623.1| Cache sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 655 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 17/228 (7%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55 K + NL + +L L S + H+I +P+G I L+ + I+ Sbjct: 423 KEMEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAGYLEGKMSADDPNFRFIHEIKR 482 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110 S ++ + + ++ + I V + + Sbjct: 483 ESKRCKKIVQDLLSYARTPKPTLEETDINELLEQIVDFAANHTDMHHVSVVKEFAKDLPR 542 Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ + + V ++ D + NG E + Sbjct: 543 IMADGDQLRQVAINLILNAGAAMQSGGTLVVRTMLDDEGYIHLIFSDNGAGI-SAENLEK 601 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + +++ ++ E ++ L Sbjct: 602 IFEPFFTTKTKGTGLGLAITRQIIDQHQGKIAIESEPGKGTTVTVKLP 649 >gi|315647361|ref|ZP_07900474.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315277563|gb|EFU40892.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 479 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 74/223 (33%), Gaps = 13/223 (5%) Query: 4 NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSA 60 + S L L + I H+I +P+ +I+ ++LL +E ++I Sbjct: 256 EEDRVMQSEKLTTAGQLAAGIAHEIRNPLTSINGFVKLLRSSESSNELYFEIIESELKRI 315 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111 + + + +G ++ L L I +++ Sbjct: 316 ELIVNELLVLSKPQGVHVSGPIEVLPILEQIITLMKVQAALKNIEIIPHYPDVPISVQGE 375 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +NL A ++ +GG +T+ + S + ++ G PE+ + Sbjct: 376 VNQLKQVFINLLKNAMEAMNQGGTITVDMLRSGHNVQIVVQDEGIGM-TPEQIQSLGQPF 434 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + H + + E + DH + L Sbjct: 435 FTTKDTGTGLGLMITKNIIHNHGGTMNVESVPDHGTTFTIQLP 477 >gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1215 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 72/221 (32%), Gaps = 11/221 (4%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 S L A+ L + I H+I +P+ A+ +L+ D ++++R Sbjct: 974 TEELLRKSEMLSAVGELAAGIAHEIRNPLTALKGFTKLILSGSHSDSYLEIMRGELDRIE 1033 Query: 62 IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + +E + E + + Sbjct: 1034 TIVNELLVLSKPQAVHIQRRNFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVEN 1093 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ +NL A ++P GG + ++V+ + + ++ G +K ++ + Sbjct: 1094 QLKQVFINLLKNAIEAMPNGGTIEVTVERDGDHVVIRVRDEGVGI-PQDKMKKLGEPFYT 1152 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + ++ L Sbjct: 1153 TKDKGTGLGLMVSFKIVEQHGGIIRYESKEGEGTTVTVRLP 1193 >gi|298505233|gb|ADI83956.1| response receiver histidine kinase [Geobacter sulfurreducens KN400] Length = 395 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 71/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQ 51 + + + S L +L L + + H+I +P+ +I +LL + E +++ Sbjct: 166 LQQAQAEIVQSEKLASLGYLSAGMAHEIRNPLNSISLFAQLLKSTLDDPEKVGYVDKILK 225 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107 L + V + + I++ V Sbjct: 226 EADRIDDIMRKLLDASKRPRFQLSEVRLDRVIEATLEAFRPQISLHGIAVVKEFRRIPPP 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ + + GG +T+ + + + + G E +I Sbjct: 286 FQADPAEIEQIFTNLFLNSIHEMNDGGSLTVVLDQDERNMVIRIADTGPGI-PREHVAKI 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + R+ E D+ V + L Sbjct: 345 FDPFFTTKTSGSGLGLAVVLRIVKTYDGRIDVEKSDESGTVFAIRLP 391 >gi|258510123|ref|YP_003183557.1| signal transduction histidine kinase, nitrogen specific, NtrB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476849|gb|ACV57168.1| signal transduction histidine kinase, nitrogen specific, NtrB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 367 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 68/227 (29%), Gaps = 15/227 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 + + + + L + + H+I +P+ I L+LL+ ++ E ++++ Sbjct: 127 LLNQHTEKIERIATIGRLAAGVAHEIRNPLTTIKGFLQLLEQRLERVDMFDEIAYIRVMM 186 Query: 55 LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + L L V+ +V E Sbjct: 187 QEIERVNALVTELLLLSKPQDMTWTTVSVSEVLGHLRPWLDEEARKRGVETVYEVPADLE 246 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ +L A ++ +GG++TI + + G + F +I Sbjct: 247 LQADRGMMDQLFAHLARNAIEAMDKGGRLTIRARAEEGRVEIEFSDTGPGIPYY-LFDRI 305 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + ++ + + L Sbjct: 306 FDVFYTTKEKGTGLGLAICQRIVADHGGHIRV-SSKGFGTTFTVSLP 351 >gi|156743753|ref|YP_001433882.1| GAF sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156235081|gb|ABU59864.1| GAF sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 492 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 73/230 (31%), Gaps = 21/230 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 L S L A+ L + + H+I +P+ A NSL L+++ D + Sbjct: 252 QAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDIPPDTPQRHFLTIAQNELG 311 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110 + F R A + L + ++++ + + I Sbjct: 312 RIARIITRMRDFYRPARDELEPTEINDLLAETIELVQTHLRHGQVTVTVDFCPNLPRLIA 371 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ LNL + A ++P GG++ + S++ +G PE Sbjct: 372 HPDQLRQVFLNLMLNACDAMPHGGQLHITTELSCENDADAQYVVISIRDSGTGI-NPEHM 430 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + E + LL Sbjct: 431 PHLFEPFYTTKPQGTGLGLAISAHIVTQHGGHIQVESEPGAGSTFTVLLP 480 >gi|222054628|ref|YP_002536990.1| histidine kinase [Geobacter sp. FRC-32] gi|221563917|gb|ACM19889.1| histidine kinase [Geobacter sp. FRC-32] Length = 367 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + K S L AL L + + H+I +P+G+I + E+L + + E ++++ Sbjct: 135 LIKTEEQLRRSERLSALGELSATLAHEIRNPLGSIKGTTEILKDSFAPGEKKYEFLEILL 194 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107 + ++ + + + + F + V R++ + Sbjct: 195 KEADRLNRVVENFLGLASPVRVEQNRCDIMLELRELVAFTTAEALSMEVKVRLEPAEIPP 254 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI------SVQDSKNENIFSLKINGNLARFP 161 + + ++ LNL M A + GG+V I +++ S NG Sbjct: 255 IKGDTEKLRQVFLNLLMNALQATGTGGEVVISAVGPLHTSENQPVIELSFADNGQGI-DQ 313 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + + +L Sbjct: 314 EMLERIFQPFFTTKKGGTGLGLAITQKIVESHGGTIRVTSTKGKGTTFTVILP 366 >gi|39996221|ref|NP_952172.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982986|gb|AAR34445.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 420 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 71/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQ 51 + + + S L +L L + + H+I +P+ +I +LL + E +++ Sbjct: 191 LQQAQAEIVQSEKLASLGYLSAGMAHEIRNPLNSISLFAQLLKSTLDDPEKVGYVDKILK 250 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107 L + V + + I++ V Sbjct: 251 EADRIDDIMRKLLDASKRPRFQLSEVRLDRVIEATLEAFRPQISLHGIAVVKEFRRIPPP 310 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ + + GG +T+ + + + + G E +I Sbjct: 311 FQADPAEIEQIFTNLFLNSIHEMNDGGSLTVVLDQDERNMVIRIADTGPGI-PREHVAKI 369 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + R+ E D+ V + L Sbjct: 370 FDPFFTTKTSGSGLGLAVVLRIVKTYDGRIDVEKSDESGTVFAIRLP 416 >gi|148656031|ref|YP_001276236.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148568141|gb|ABQ90286.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 488 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 76/234 (32%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 ++ L S L A+ L + + H+I +P+ A NSL L+++ D + Sbjct: 248 LSAAQAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDMPPDAPQRHFLTIAQ 307 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + F R A + L + ++++ + + + Sbjct: 308 NELGRIARIITRMRDFYRPARDELELTEVNDLLAETIELVQTHLRHGHVTVTASFCPNLP 367 Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARF 160 + ++ LNL + A ++P GG++ + + + +++ G Sbjct: 368 LLVAHPDQLRQVFLNLMLNACDAMPNGGQLHISTELSCRNERDEQWVVVAVRDTGVGIN- 426 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + + + + + ++ + E + LL Sbjct: 427 PEHMPHLFEPFYTTKPQGTGLGLAISAHIVTQHGGHIQVESTPGVGSTFTVLLP 480 >gi|39996594|ref|NP_952545.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39983475|gb|AAR34868.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|307634854|gb|ADI84333.2| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 550 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 M +++ S L A+ L +RI H+I +P+ AI S +L+ + + + ++ Sbjct: 312 MEESLK---KSDRLAAIGELSARIAHEIRNPLAAISGSTQLIAQGGAVSDPDRRLFDIVL 368 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGE 107 + + + + + + D+R +V T Sbjct: 369 RETDRLNGLISDFLAYARPNQPEPRPVDFHSLVAELAALVTSDERFEGVVIDNRVDSTFR 428 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---------NIFSLKINGNLA 158 + + ++L NL A ++P GG +T+ S S+ G Sbjct: 429 PLLDPDQFRQVLWNLMGNAAGAMPDGGTITVEAGQSDEIRGGGQRRITYRISVADTGLGM 488 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + R+ E + L Sbjct: 489 DEATV-ARIFEPFFTTKSTGTGLGLATVHRIVEAHGGRIAVESTPGKGTMFVIFLP 543 >gi|52079915|ref|YP_078706.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52785286|ref|YP_091115.1| KinD [Bacillus licheniformis ATCC 14580] gi|319646267|ref|ZP_08000497.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52003126|gb|AAU23068.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52347788|gb|AAU40422.1| KinD [Bacillus licheniformis ATCC 14580] gi|317392017|gb|EFV72814.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 503 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 66/225 (29%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + ++L+ L + H+I +P+ I ++LL + E + Sbjct: 273 QERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYQSKEDQMYFSIIDQEIR 332 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKI 109 + + L + ++I++ + V+ + Sbjct: 333 RINQIVSEFLVLGKPTAEQWQLNSMNEMIDEIMPIIHSEANLYNVEVEFQDCGEDPAYVY 392 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++LN+ A S+ GGK+ I ++ + + +K G E I Sbjct: 393 CKKDHIKQVVLNVAKNALESMKNGGKLVIQIEHDQEKAQIIVKDIGEGI-PQEMMESIFQ 451 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + E ++ L Sbjct: 452 PFVTSKEKGTGLGLVVCKRIISMYGGTIHIESERHKGTTVTITLP 496 >gi|317127574|ref|YP_004093856.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315472522|gb|ADU29125.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 611 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 12/225 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 MA+ + N + + L + I H+I +P+ AI L+LL E + ++ R Sbjct: 378 MAEEMMINSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLLRPDFVTKEKYMNIISTEIER 437 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + + Y+ + I + I + + E + E Sbjct: 438 IEMIISELLILSKPQEIHYSKTNIVSIIEEVKMLLETQAILKGVEINTEFYCENTYIYCE 497 Query: 115 RAKILLNLFM---VAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ A ++P + ++ +N K G EK ++I Sbjct: 498 KNQLKQVCINFIKNAIEAMPNGGNLYINVTENREENGIFIHFKDEGKGI-PKEKISKIGH 556 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + F + ++ + + + ++ L Sbjct: 557 PFYTTKSDGTGLGFMVSKRIVEHHEGYVEIDSELNVGTTITVFLP 601 >gi|78223657|ref|YP_385404.1| histidine kinase [Geobacter metallireducens GS-15] gi|78194912|gb|ABB32679.1| histidine kinase [Geobacter metallireducens GS-15] Length = 367 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 58/229 (25%), Gaps = 20/229 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + L AL L + + H+I +P+G+I + E+L + + E ++++ + Sbjct: 139 EEQLRRAERLSALGELSAMLAHEIRNPLGSIRGTAEILRDDFQPGHPKHEFLEILLKETD 198 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + L L + V ++ Sbjct: 199 RLNRVVEDFLRLSRPGDGERKTCDLAAELRELVTLLGSDAAARGVRIGLEADEVPPVTGD 258 Query: 112 SRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + LNL + + K+ D + + G E Sbjct: 259 PEKLRQAFLNLMLNGIQATGAGGTVTVRVKMFPRSGDDRPLVELAFADTGAGI-PRESLE 317 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E L Sbjct: 318 RIFTPFFTTKEGGTGLGLAITQRIVEGHGGTVTVESEPGQGTTFRVRLP 366 >gi|239826867|ref|YP_002949491.1| histidine kinase [Geobacillus sp. WCH70] gi|239807160|gb|ACS24225.1| histidine kinase [Geobacillus sp. WCH70] Length = 581 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 20/223 (8%), Positives = 66/223 (29%), Gaps = 11/223 (4%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 ++ S L L + + H+I +P+ ++ ++LL E +I Sbjct: 353 QQSEELLRKSEKLAVVGELAAGVAHEIRNPLTSLKGFIQLLKEGECNQTYFDIIEAELER 412 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDL 111 + L + + + ++ Q + + + Sbjct: 413 LNEIVDEFLLLGKPHPTKKAYSRVSEMLQHVMKLLEGQALLHHVTVQYFVDEQLPLLYCD 472 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +N+ A ++P GG + I + + + + G E+ ++ + Sbjct: 473 ENQLKQVFINIIKNAIEAMPNGGILRIEAKQRLDSILICITDEGCGI-PKERMAKLGEPF 531 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + + + Sbjct: 532 YSTKEKGTGLGLMVSFKIVEAHGGKMKIHSEEGKGTTVCLIFP 574 >gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] Length = 631 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51 AK + + + L + + S + H++ +P+ +I +EL+ + + ++ Sbjct: 392 AKELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNENQRRCLE 451 Query: 52 LIRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + + + + M + D + + + Q + ++ + Sbjct: 452 IAKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINEVLNSLQPLTKEKNIEVKC 511 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L+NL A P G + I KN +K G Sbjct: 512 DIEDNLTAKVDKDRIIQVLINLIENAIKFSPVKGVIEIHAFRDKNYAHIIIKDYGPGIPK 571 Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + D + + + ++ E LL Sbjct: 572 KDL-ERIFDKFYQVNFPKIKRDGAGLGLAICKSIIEAHGGKIWVESELGKGSAFHILLP 629 >gi|189423221|ref|YP_001950398.1| histidine kinase [Geobacter lovleyi SZ] gi|189419480|gb|ACD93878.1| histidine kinase [Geobacter lovleyi SZ] Length = 614 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 68/229 (29%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 + + + L +L + + H+I +P+ I + ELL D+ E++ Sbjct: 383 LLETEKELARNERLAELGMLSAGVAHEINNPLAIIRGNAELLQMSIPAGADDQEEVSEIL 442 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + L R L +I Q+ ++ + I Sbjct: 443 TQAGRINRITSSLLSLARQEKRQVSRFPLPDLLDEILNQIGHQVPLAGYTIERRYQQTAI 502 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFT 165 L +R ++ ++ G++TIS + D ++ G PE+ Sbjct: 503 QLEADREQLRQVFTNLILNGLQAMEGEGRLTISTEADPDGTCSITVADTGPGI-DPEQQE 561 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + + + L Sbjct: 562 RLFSPFFSTKQNGTGLGLAVSWGIVRNHGGTIAVQSALGCGARFTVTLP 610 >gi|197119034|ref|YP_002139461.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088394|gb|ACH39665.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 829 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 +N+ + +D L +L L + I H++ +P+ I L+ L ++ + + + Sbjct: 603 RENLQEEMMRLDRLASLGKLSAGIAHEVRNPLTGISLLLDDLHDQASSGPEDRDLIKKAL 662 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I L + D + D ++ K GE Sbjct: 663 AEIERVEKLINALLNYSSPVRADFRECDLNRLVCDTVLLMRRQCERQKVQLNLTEGEVPP 722 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 L + + +LN+ A +LP GG++ + + + +G + I Sbjct: 723 LRLDPEKIKQAVLNIIKNAQEALPEGGRIEVVTSVQDGYAVIGIGDDGPGIASHDLPL-I 781 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ ++ E + L Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIVEEHHGKVRVETAPGGGTRFTIELP 828 >gi|222055425|ref|YP_002537787.1| histidine kinase [Geobacter sp. FRC-32] gi|221564714|gb|ACM20686.1| histidine kinase [Geobacter sp. FRC-32] Length = 654 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 18/228 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 MA N+ + +L L S + H+I +P+G I L+ + I+ Sbjct: 425 MAANLA---QQGKMASLGVLSSGVAHEINNPLGVILGYAGYLEGKLSPDDPNYRFVHEIK 481 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109 S ++ + + + I V + GE Sbjct: 482 RESKRCKKIVQDLLSYARTPKPTLENTDINALLDQIVDFAANHTDMHHVSVVKEFAGELP 541 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ + A++ GG++ + + + + NG PE + Sbjct: 542 TIMADGDQLRQVAINLILNSGAAMQSGGRLIVGSRLENSFIFLTFADNGAGI-SPENLEK 600 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + +++ + E + L Sbjct: 601 IFEPFFTTKTKGTGLGLAITKQIIEQHQGEITIESEQGRGTTVVVKLP 648 >gi|298506526|gb|ADI85249.1| sensor histidine kinase, Cache and HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 830 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50 ++ ++ +D L +L L + I H++ +P+ + L+ L + + + + Sbjct: 603 KESFREEMTRLDRLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKAL 662 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Q I L F + D + D ++ G+ Sbjct: 663 QEIERVERLVAGLLNFSSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPV 722 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + LLNL A ++P GG V ++ + + ++ G + I Sbjct: 723 FRIDVEKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPL-I 781 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ R+ E + L Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIVEEHHGRISVESSAGAGTTFTITLP 828 >gi|39997587|ref|NP_953538.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39984479|gb|AAR35865.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 830 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50 ++ ++ +D L +L L + I H++ +P+ + L+ L + + + + Sbjct: 603 KESFREEMTRLDRLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKAL 662 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Q I L F + D + D ++ G+ Sbjct: 663 QEIERVERLVAGLLNFSSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPV 722 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + LLNL A ++P GG V ++ + + ++ G + I Sbjct: 723 FRIDVEKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPL-I 781 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ R+ E + L Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIVEEHHGRISVESSAGAGTTFTITLP 828 >gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 68/227 (29%), Gaps = 24/227 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLK- 65 + + + + H++ +P+ +I +E L E D +++I + + Sbjct: 225 EKIRSDFVANVSHELRTPLTSIRGFIETLREGAIDNIERRDRFLEIIEFEAERLTRLIND 284 Query: 66 --------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 ++ F V + + + ++ + + + + + Sbjct: 285 ILTLSEIENLKEGFVKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDR 344 Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 + + P GG V ++ D +N + ++ +G E ++ + Sbjct: 345 LRQMIINLVDNGIKYTPEGGYVKVTTTDMENNIVIEVEDSGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + K + E + +L K Sbjct: 404 DKGRSRKLGGTGLGLAIVKHIVESMKGSITVESEVGKGTKFAIVLPK 450 >gi|78222275|ref|YP_384022.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193530|gb|ABB31297.1| histidine kinase [Geobacter metallireducens GS-15] Length = 673 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 68/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 + K + + L +L + + H+I +P+ I + ELL E E + I Sbjct: 430 LVKTQEDLVRAAKLADIGMLAAGVAHEINNPLAIIRGNTELLQMAIPEDDPSREEVDTIA 489 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + LKF R G+V+ L +I QV ++ + + Sbjct: 490 QQTGRVERIVGSLLKFARQQKKELGTVEVNRLLDEILKQVGHQIPLAGIDIRRDYAADIP 549 Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164 L + ++ + ++ V S +++ G PE Sbjct: 550 LLEGDGDQLRQVFTNLILNAIQAMKEGGTLTVGTSRDSEAGTCTVAVEDTGAGI-PPENL 608 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + + ++ + E +L Sbjct: 609 RNIFSPFFTTRNDGTGLGLAVSYGIVRDHGGNIQVESTAGTGSTFRVVLP 658 >gi|269139357|ref|YP_003296058.1| sensory histidine kinase in two-component regulatory system with AtoC [Edwardsiella tarda EIB202] gi|267985018|gb|ACY84847.1| sensory histidine kinase in two-component regulatory system with AtoC [Edwardsiella tarda EIB202] gi|304559262|gb|ADM41926.1| Sensory histidine kinase AtoS [Edwardsiella tarda FL6-60] Length = 590 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 75/229 (32%), Gaps = 16/229 (6%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K L + L L L + + H++ +P+ AI ++++ + + + + + Sbjct: 355 RKETQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTTQPAHQEYLSVVLK 414 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 K ++ ++ S + +I++ + + + V R Sbjct: 415 EIDSINKVIQQLLDFSRPRQSQWQQVSLNALIDEALILVQTSGVQARIAFHCALDRRLPA 474 Query: 116 --------AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ RG + Q + + +++ +G + Sbjct: 475 IVADRELLKQVLLNILINAVQAISARGEIRIRTWQPAPAQQAVAIEDSGCGIDIA-LQQK 533 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + + + ++ + + L + Sbjct: 534 IFDPFFTTKASGTGLGLALSQRIINAHRGDIDVVSTPGGGSTFTLTLPR 582 >gi|205372579|ref|ZP_03225390.1| KinC [Bacillus coahuilensis m4-4] Length = 434 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSM 58 +N L S+ L +A + + I H++ +P+ +I L+L+ E E + LI Sbjct: 203 QQNENLALESVKLGAIAQMSASIAHEVRNPLTSISGFLQLMKEQKSFNPEYIDLIFSEMK 262 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + L + + I L + + + + + S I + Sbjct: 263 RIELVLSELLVLSKPQAVTYKKIELCTVIEQVITLMTTETNMKSIEIHQSLPAYPIFIKG 322 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 E ++ + A ++ GGK+++ S + ++ G + I Sbjct: 323 EENQLKQVMINLIKNAIDAMDHGGKISLYYSLSPDTISLFIRDEGVGIPEEQLHN-IGQA 381 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +L + +L Sbjct: 382 FYTTKEKGTGLGLTVCYKIIENHQGNILIDSKVGEGTTFEIILP 425 >gi|148262167|ref|YP_001228873.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395667|gb|ABQ24300.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 372 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 66/225 (29%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + L L + + + H+I +P+G+I + E+L + + E +++ + Sbjct: 139 EEQLRRAEKLSTLGEMAAVLAHEIRNPLGSIRGTAEILKDDYNPGDPKHEFIEIQIKETE 198 Query: 59 SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + + + D + Sbjct: 199 RLNRVVEDFLHMARPQPADLRPCPVQDELETIVTLVANDARDRQIKLVLQPPPFPVIIRA 258 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVD 169 + + LN+ + A + P G V IS + + +G E +I + Sbjct: 259 DGEKLRQAFLNIIINALQATPPSGSVIISTTIYQAALCEIRFRDSGPGI-DAETLGRIFE 317 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + ++ E H ++ L Sbjct: 318 PFFTTKPDGTGLGLAITRKIIESHGGTMMVESESGHGTTVTVRLP 362 >gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 453 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 71/236 (30%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + ++I + + + H++ +P+ +I+ LE L ++ ++++ Sbjct: 216 LLRDITERRKLERMRTEFVANVSHELRTPLTSINGFLETLLDGAIEDPKTARHFLEIMNA 275 Query: 56 SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTG 106 + + + VD + Q+ + ++ Sbjct: 276 ETKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIKLFTVLPD 335 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + + ++++NL A P G+V + V ++ + + G + Sbjct: 336 KLPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLNREKVRVYVADTGIGIPQEDL 395 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + ++ E S L Sbjct: 396 PRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPG-GSTFSFTLP 450 >gi|149922767|ref|ZP_01911192.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149816387|gb|EDM75888.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 783 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 20/226 (8%) Query: 9 LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---- 62 L S + A LL + I H+I +P+ + +LL E +E ++ + + + S Sbjct: 542 LQSQKMAAVGLLAAGIAHEINNPLSGVVGYSKLLLEKPLEPKIREKVERIAASGERCRKI 601 Query: 63 ----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLS 112 L G VD + + +V E + + + + + Sbjct: 602 VEGVLLFSRSQQGGERTEVDLATLVDRVVRVGEYQWKMHNVRILREPEQLERPLTLMADA 661 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171 + ++LLNL A ++PRGG + I + + + + IF++ G E I D Sbjct: 662 DQIEQVLLNLLSNAVDAMPRGGTIRIRLGEGEADTVIFAVSDEGMGI-PEEIRHSIFDPF 720 Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ +L E + L + Sbjct: 721 FSTKEIGKGTGLGLSISYGIVRDHGGDILLESQPGRGTTFTVTLPR 766 >gi|322381982|ref|ZP_08055930.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154046|gb|EFX46376.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 513 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 72/222 (32%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSA 60 + + +V L S + H+I +P+ + L++ E +LI Sbjct: 275 KEEHLLRTEKLRVVGELASGMAHEIRNPLTTVKGFLQIAKENEYNIRNWYELIMDEIKRM 334 Query: 61 IIRL-KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDLS 112 +F++ + + I +VI A ++ + Sbjct: 335 SELTSEFLQFSKPHAIQFRIHSLHSCILRVIWLTSAEGTKLGHEVVYQAPAEDAYVLMDE 394 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++L+NL A+ ++ + GKVT+ + K + + ++ G ++ +I Sbjct: 395 DKIVQMLMNLIKNAYEAMQKKGKVTLRLSRLKEDVVLEVEDTGTGI-PQDRVEKIFTPFY 453 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E ++ Sbjct: 454 TTKETGTGLGLSICHKIVQDHGGTMEVESFPENGTKFIITFP 495 >gi|310821064|ref|YP_003953422.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309394136|gb|ADO71595.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 748 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 60/228 (26%), Gaps = 24/228 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--- 64 L AL + + + H+I +P+GAI + + LD + E + + + Sbjct: 466 ERDRLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVV 525 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + R G D + ++I++ + + + V + + ++ Sbjct: 526 TAFLDYARPLKQNFGPTDLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAEQLKQ 585 Query: 121 NLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 L + + + + + + G E+ Sbjct: 586 VLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVAESVEVHVFDTGPGI-PAEQQQH 644 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + Sbjct: 645 IFVPFFTTKEKGTGLGLAICQRIVKNHGGSISVQSKPGEGCIFIVRFP 692 >gi|115379441|ref|ZP_01466541.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1] gi|115363550|gb|EAU62685.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1] Length = 452 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 60/228 (26%), Gaps = 24/228 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--- 64 L AL + + + H+I +P+GAI + + LD + E + + + Sbjct: 170 ERDRLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVV 229 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + R G D + ++I++ + + + V + + ++ Sbjct: 230 TAFLDYARPLKQNFGPTDLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAEQLKQ 289 Query: 121 NLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 L + + + + + + G E+ Sbjct: 290 VLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVAESVEVHVFDTGPGI-PAEQQQH 348 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + Sbjct: 349 IFVPFFTTKEKGTGLGLAICQRIVKNHGGSISVQSKPGEGCIFIVRFP 396 >gi|158522822|ref|YP_001530692.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511648|gb|ABW68615.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 495 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 + K L + + +L L + + H + +P+G I +LL E ++ Sbjct: 253 LQKTQTQLLQAEKMSSLGKLAAGVAHQLNNPLGGIMLYAKLLLEDYDLSREVTEDIHRIL 312 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106 + + SS L+F R VD + ++E+ + Sbjct: 313 RDAQRSSDIVRELLEFARQTRQQRTMVDVNQSVARTLFLLENQTLFHDITIEKRFADTAL 372 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKF 164 ++ + +N+ + A ++ G++TI+ + G + Sbjct: 373 WVDADVQQLNHVFMNIILNAAQAMEGKGELTITTGASAMGEMVTVEIADTGPGI-PADTL 431 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + V + ++ R+ + V L Sbjct: 432 PRIFEPFYTTKDEGKGTGLGLSLVYSIIDDHGGRVSAANKPERGAVFRVELP 483 >gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] Length = 632 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54 + ++ L + + S + H++ +P+ +I +EL+ + + + +++ Sbjct: 396 LKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNSNQRRCLEIAN 455 Query: 55 LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + M + D ++ + + ++ + ++ Sbjct: 456 NNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIKDMVVDVLNSLGPQIKEKNIEIKCEIE 515 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L+NL A P G + I N +K G + Sbjct: 516 ENLTAKVDKDRITQVLINLIENAIKFSPVKGVIEIHAFRDNNYAHIIIKDYGPGIPKKDL 575 Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + ++ E LL Sbjct: 576 DKIFDKFYQVNFPKIKKDGAGLGLAICKSIIEAHGGKIWVESELGKGTSFHVLLP 630 >gi|304317189|ref|YP_003852334.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778691|gb|ADL69250.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 453 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 24/227 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L E D+ +++I + + Sbjct: 225 EKIRSDFVANVSHELRTPLTSIRGFIETLREGAIDNVEERDKFLEIIEFEAERLTRLIND 284 Query: 67 MRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRE 114 + + + + ++ Sbjct: 285 ILTLSEIENLKEGFVKEDIAIDDEVNEIFYIMEKTANDKSIKLIKDLNCSGVVIKTSKDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V ++ D K + + +K +G E ++ + Sbjct: 345 LRQMIINLVDNGIKYTPEGGYVKVTTIDRKGDVVIEVKDSGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + K + E + +L K Sbjct: 404 DKGRSRKLGGTGLGLAIVKHIVESMKGSISVESEVGKGTKFTIVLPK 450 >gi|212639223|ref|YP_002315743.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212560703|gb|ACJ33758.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 417 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRL 55 M +++ + L + + I H+I +P+ + L+ L E E + QL+ Sbjct: 183 MFQSLNQMKEAEKLAIAGRIAAGIAHEIRNPLTTVRGYLQFLKEQLPEHIITLIDQLLIP 242 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGE 107 A + + I + Q D V+ + + Sbjct: 243 ELDRANDIITDFLNIAKPNEAKAEWIEVNHFIQNDVDLLLKSEALLHNVELSYHLDEKLQ 302 Query: 108 KIDLSRERAKILLNLFMVAHAS----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ ++L L + + + +V I + N ++ NG Sbjct: 303 HYTVYIDKNQLLQVLINLFRNAIEAKTEKSLRVNIETKLHNNLVQIYVRDNGPGIPPT-I 361 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + +K + + H L Sbjct: 362 IHHVFDPFFSTKSTGTGLGLSLSRKIVELHKGSMRVQSEFGHGSCFIIELP 412 >gi|94969524|ref|YP_591572.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551574|gb|ABF41498.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1168 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L S + A+ L S + H++ +P+ AI +LL++ + + ++ Sbjct: 786 LRRTQEQLLQSEKMSAVGQLISGVAHELNNPLTAIVGYAQLLEQEPLSARSLDFVQKLYK 845 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKID 110 L F R VD + + + D + RV+ ++ Sbjct: 846 QTQRTRRVVQNLLSFARQRKPLKQDVDLRRVIDETLALRDYDLKLNNIRVERDFSEAFPH 905 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-----LKINGNLARFPE 162 + + ++ LN+ A ++ GG+ + + + +G + P Sbjct: 906 VIADSHQLEQVFLNIINNAVDAMLEGGRGGALRVSAGIDFEHDAALVEFRDSGPGIKEP- 964 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + E+ + + + L Sbjct: 965 --KRIFDPFYTTKVVGKGTGLGLSICYGIVKEHGGDITAFNHAEGGAIFQVRLP 1016 >gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 577 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ +I E L + I ++ + +I S ++ + Sbjct: 357 FVANVSHELKTPLTSIKGFAETLLDGAQDVPEIREQFLNIIHDESERMQTLVEDLLELSR 416 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDLSRERAKILLN 121 T VD L + +++ + ++ ++++N Sbjct: 417 LEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIHLETEEEVFIRADLNRLKQVVVN 476 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A P GG V IS++D + + +K +G E +I + Sbjct: 477 LVANALNYTPNGGNVWISLEDGEEAVMLRIKDDGIGIHPKE-MQRIFERFYRVDKARSRN 535 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + E ++ + L K Sbjct: 536 SGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIRLPK 575 >gi|308173366|ref|YP_003920071.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606230|emb|CBI42601.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus amyloliquefaciens DSM 7] Length = 606 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ E + S Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEENEHYFEIVFSELS 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + A +V + L I + ++ + + + ++ Sbjct: 441 RIELILSELLMFAKPQHNAVKERVNLKKIISEVTALLETQANLKGIFIKTDYERDSMFIN 500 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + + + ++K G+ +I + Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVHILMTEDEYSVNVTVKDEGDGIPEN-VLKRIGE 559 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + L ++ + + D K Sbjct: 560 PFLTTKEKGTGLGLMVTFNLIKNHQGAIQVDSKPDKGTAFHITFPK 605 >gi|108763457|ref|YP_631616.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108467337|gb|ABF92522.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 491 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 80/224 (35%), Gaps = 10/224 (4%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56 + ++ + S L + L + + H+I +P+G I + LL G + +++I Sbjct: 266 LREHQERLVQSERLAGIGRLAAGVAHEINNPLGVILGYVRLLQRKAEGALADDLRIIEEE 325 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111 ++ ++ M + L ++ + E + V + Sbjct: 326 TLRCRDIVEGMLDLSRPLQVPGETLELRELVEEVVSRQRESAQHSAASLTVEGEAQVAGH 385 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + +++ NL A + G+VT+++Q + E S + +G PE ++ + Sbjct: 386 PQRLRQVVTNLVKNAMEAAGPSGQVTVAIQAHEGEVALSFRDSGPGL-SPEAQKRMFEPF 444 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A + R+ P + + L + Sbjct: 445 FTTKPHGTGLGLAVSQAIAQAHGGRIQPRNLPGRGAEFTLHLPR 488 >gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 ++I + + + H++ +P+ +I LE L +E I ++ + + Sbjct: 219 RDITDRRKLEQMRTEFVANVSHELRTPLTSISGFLETLLDGALEEPEIARRFLEHMSDET 278 Query: 58 MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEK 108 + + R VD + + V + V+ + Sbjct: 279 ERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRVAPVYEPRAREKGLTLMVTLSPNL 338 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L NL A P GK+ I + S+ E + G E Sbjct: 339 PPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARASEQEMKVIVTDTGIGI-PTESLA 397 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + L + + +L Sbjct: 398 RIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSLEVTSTVGKGSIFAFILP 452 >gi|148265413|ref|YP_001232119.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398913|gb|ABQ27546.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 671 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 64/228 (28%), Gaps = 17/228 (7%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + + L ++ + + H+I +P+ I + E+L+ E + +I Sbjct: 431 QTQAELVRAEKLADLGIMAAGVAHEINTPLTIIRGNAEVLEMFITPGHPNREEIDIISRQ 490 Query: 57 SMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + L + I R Sbjct: 491 TERMAKIVSNLLLFARQKKLHQGRVAIHALLNDIVSQIGFQATLADIRIVRNYSPDLDTI 550 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFTQ 166 S + ++ NL + A ++ G +T + + + G+ P++ + Sbjct: 551 SGDSDQLRQVFTNLILNAVQAMEGSGTLTLATRILPDEAGYSIEVADTGSGI-GPDQREK 609 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + ++ + E + +L Sbjct: 610 IFTPFFTTKATGSGLGLSVSYGIIKDHGGDISVESSPETGTTFRVVLP 657 >gi|222054729|ref|YP_002537091.1| histidine kinase [Geobacter sp. FRC-32] gi|221564018|gb|ACM19990.1| histidine kinase [Geobacter sp. FRC-32] Length = 663 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 + K + + L A+ L + + H+I +P+ I + ELL D + Sbjct: 430 LVKAREELVRAEKLAAIGELAAGVAHEINNPMAIIRGNTELLQMSVPEGADNRDEVDTIY 489 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 Q + L+F R G V + +I Q++ R+ + Sbjct: 490 QQVGRVERIVGNLLRFARQEKKQLGHVRVNELMEEILAQIVHQVPLSHIRIIKEYEPGLP 549 Query: 110 DLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKF 164 L + +I L + ++ K V + + + + G + Sbjct: 550 ILEGDSEQIRQVLTNLVLNAIQAMDKGGILTVRTQLDRQREQTEIMIADTGTGI-EADNL 608 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + + + + +++ + E L Sbjct: 609 QQIFNPFFTTKANGTGLGLSVSYGIVNDHGGTIRVESKAGKGSTFKVSLP 658 >gi|322418889|ref|YP_004198112.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125276|gb|ADW12836.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 490 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 17/226 (7%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 + S + + LL + + H+I +P+ AI LL + D + ++ S Sbjct: 259 RNEAIRSEKMASVGLLAAGMAHEIGTPLAAIMGYSALLAEDLAADAEKSDYLRRITDESK 318 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------ID 110 I + A + + L +E+V+E + + E Sbjct: 319 RIDRIVRGLLDYARPKGALREEVPVLQLLEKVVELLSTQGVLKHLEVSVETEPGLPSLYG 378 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++L+NL M A ++P+GGK+ + S + I + +G+ PE +++ D Sbjct: 379 DPYQLEQLLINLIMNARDAMPQGGKLWLKGSCSGADVIIDVIDSGHGM-PPEHLSRVFDP 437 Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A RL + + L Sbjct: 438 FFTTKEPGKGTGLGLAIAARIAESCGGRLDVQSELGKGSRFTLTLP 483 >gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] Length = 815 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 19/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61 ++I + + + + H++ +P+ AI ELL ++V ++ + Sbjct: 456 RDISLAKELDRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPPEKVRNYYQIIYKESE 515 Query: 62 IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108 + V+ + + + + V + Sbjct: 516 RLTQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTSKHTIVLQFPEYPTFI 575 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + A++ NL A P GG + + V D + + ++ G Sbjct: 576 LGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKMEDIVIEVQDQGIGIPPEHLPHIFD 635 Query: 169 DGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + ++ + L + Sbjct: 636 RFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEGTTFTIRLPR 687 >gi|319650573|ref|ZP_08004713.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317397754|gb|EFV78452.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 481 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 11/223 (4%) Query: 2 AKNICFNLS-SMDL--VALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRL 55 K L + L V L + I H+I +P+ AI +LL E + ++ + Sbjct: 258 QKKTEEKLQNAEKLSVVGQLAAGIAHEIRNPLTAIKGFTQLLYEEHKGDFAEVILSELER 317 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDL 111 L + + + ++ ++ V Q Sbjct: 318 IEGIVNDLLVLAKPQITEMEETCLTNVVKSVITLLNSQAVMENIVIELTQSPGEFYVKCE 377 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++L+N+ + ++P GGK+ + ++ + I S++ G E+ ++ + Sbjct: 378 KDKIKQVLINIIKNSIEAMPAGGKINVDIRQEDHSVIISVEDEGIGI-PEERLAKLGEPF 436 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L ++ + L Sbjct: 437 YSTKEKGTGLGIMICKKIIKNHGGNLYIHSRENEGTTVRITLP 479 >gi|302344709|ref|YP_003809238.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] gi|301641322|gb|ADK86644.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] Length = 573 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 19/228 (8%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54 + + L + +L + + H+I +P+ AI +LLD + Sbjct: 339 ERQLMHAEKLASVGILAAGVAHEIGNPLAAIGGYAQLLDSDDTTPAERREFAGAIAEQTE 398 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDL 111 + L + R + VD + + + + +Q + Sbjct: 399 RINRIIRELLDYSRPSQYLGQPVDVNQAIEAVLNMFFTSKRLSQDNLSIQRDLARNLPKV 458 Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 S +R +++LN+ + A ++ GG++TIS ++ G + I Sbjct: 459 SLDRDQLQQVVLNMVINAAQAMAGGGQLTISTREQAGWLRMEFADTGPGIGPDKLPL-IF 517 Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + R+ + LL Sbjct: 518 DPFFTTKPPGQGTGLGLSICDRIISAGGGRIEVASALGKGTTFTVLLP 565 >gi|158522818|ref|YP_001530688.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511644|gb|ABW68611.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 595 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 M + S L A+ L + + H+I +P+ +I E + + + + Sbjct: 366 MRRLEKEVARSRRLAAIGKLAAGVAHEIRNPLSSIKGFATYFKEKFSDSDQDKKTADTMI 425 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + L +E + + Sbjct: 426 YEVERLNRAVTQLLEFARPVSLEITEVEPGELIEHSLRLMENDFTNKGIESTARIQTTRP 485 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKF 164 ++LLNL++ A ++ GG++T+++ D N + G+ + Sbjct: 486 VIRTDRDRLNQVLLNLYLNAVDAMESGGRLTVTLSDGDNNDTVTIDVTDTGHGIAEKD-M 544 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI D + + V L + E + H + Sbjct: 545 EQIFDPYFTTRSRGTGLGLAIVYKLVESLGGTITVESREGHGTTFHIRVP 594 >gi|153006251|ref|YP_001380576.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029824|gb|ABS27592.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 573 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 +A + + + A + R+ H+I +P+ I S+E L + I DE Sbjct: 341 LAASRARLAQAERVAAWREVARRLAHEIKNPLTPIAMSVETLRDAHARARPDFGEIFDEG 400 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + I + + + ++ Q + V + Sbjct: 401 TRAIGEEVRRLKRIVDEFSRFARLPAPERTPVAPDELVQSVLALFPSAPAGVVVAREVEA 460 Query: 110 D------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++LLNL A ++P GG + ++ + + FS+ G PE Sbjct: 461 GLPAVLADRDQVVQVLLNLVRNALDAMPGGGTLRVAARGEGSAVAFSVSDTGPGV-RPED 519 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + +A E+ L + L Sbjct: 520 RPRVFEPYFTTKEGGTGLGLAIAQRIAEEHGGTLELRSAPGEGATFTLTLP 570 >gi|315136851|dbj|BAJ44010.1| sensory histidine kinase AtoS [Escherichia coli DH1] Length = 590 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 77/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 355 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 414 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 415 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 474 Query: 112 SRERA----KILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ RG + Q S ++ S++ NG + Sbjct: 475 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 533 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 534 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 581 >gi|300931435|ref|ZP_07146764.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 187-1] gi|300460805|gb|EFK24298.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 187-1] gi|323973080|gb|EGB68274.1| hsp90-like protein [Escherichia coli TA007] Length = 593 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|258514299|ref|YP_003190521.1| sensory histidine kinase AtoS [Desulfotomaculum acetoxidans DSM 771] gi|257778004|gb|ACV61898.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 611 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 61/217 (28%), Gaps = 13/217 (5%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAII 62 L AL L + + H+I +P+ +I ++ + I + + + Sbjct: 391 RQERLAALGKLVAGVAHEIRNPLTSISCYIQHWQDQNIPSPKALSTMFREVTRLDTIVDQ 450 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 L F + A D + D+ ++ ++ + + +I L Sbjct: 451 LLYFAKPAEAKFIKKDINFLIEDVLGFFQEVYKDKCNFVRNYQSNLPLVWIDPEQIERVL 510 Query: 123 FMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDGNVESTID 177 + ++ + ++ S+ G PE Q+ D + Sbjct: 511 ANMFFNAMQAIQEEITVTVSTEYCAAKDKVYVSVSDTGCGI-PPENLAQLFDPFFSTRPK 569 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E S L+ Sbjct: 570 GTGLGLAIAHEIIQAHGGHIEVESEVGRGAKFSFYLK 606 >gi|147677757|ref|YP_001211972.1| hypothetical protein PTH_1422 [Pelotomaculum thermopropionicum SI] gi|146273854|dbj|BAF59603.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI] Length = 796 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIR 54 + + L + + + H++ +P+ A+ +LL E ++ + ++I Sbjct: 566 LRRTQKAVRERERLAIIGQMAAGMAHEVKNPLTAVRGFTQLLKEKCPDNPKLVSYAEIIL 625 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTG 106 A + L + + I ++ + V Sbjct: 626 EEIDRANSVITEFLQLARPKQPALKRQSLNSLVEEIAAIVSSQAFLKNIKVEYECVDNLP 685 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKF 164 + + ++LLN+ A ++P GG + + + + G E+ Sbjct: 686 LCMLDRDQIKQVLLNMCQNAIEAMPGGGILVMKTGFLPAQKEVFIDINDTGCGI-PREQI 744 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + D + + +K R+ + + L Sbjct: 745 EKIGVPFFTTKADGTGLGLSISYSIIGAHKGRVEVDSKEGKGTKFRIYLP 794 >gi|300981268|ref|ZP_07175445.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 200-1] gi|300307632|gb|EFJ62152.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 200-1] gi|324013106|gb|EGB82325.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 60-1] Length = 593 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|315285841|gb|EFU45281.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 110-3] gi|315298047|gb|EFU57316.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 16-3] Length = 593 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|323701194|ref|ZP_08112869.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533796|gb|EGB23660.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 432 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 76/219 (34%), Gaps = 15/219 (6%) Query: 10 SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAII 62 S L A L+ + I H+I +P+ I +L+ + + V+Q ++ ++ + I Sbjct: 212 ESEKLAAIGLMSAGITHEIKNPLTVIQGFAQLIKKNVEGERVLQDYITTILEETNQAIRI 271 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSRER 115 F++LA + + + +V ++ + + ++ Sbjct: 272 INDFLKLARFREPVLTKQSVVKLMGEVRASIEPQALANNITLEYKGADILPECMFDKQQL 331 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++L+NL A ++ GG +T+S N+ +K G E ++ + Sbjct: 332 KQVLINLCQNAIEAMTDGGILTLSSGSHCNDTFIEIKDTGRGIPC-ESLNKLGLPFFTTK 390 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + + L Sbjct: 391 EHGTGLGLNICYAIISAHNGRIEVDSREGQGSSFRVYLP 429 >gi|300936770|ref|ZP_07151663.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 21-1] gi|300458100|gb|EFK21593.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 21-1] Length = 593 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|227887277|ref|ZP_04005082.1| sensory histidine kinase AtoS [Escherichia coli 83972] gi|300983212|ref|ZP_07176489.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 45-1] gi|301048967|ref|ZP_07195956.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 185-1] gi|227835627|gb|EEJ46093.1| sensory histidine kinase AtoS [Escherichia coli 83972] gi|300299218|gb|EFJ55603.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 185-1] gi|300408613|gb|EFJ92151.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 45-1] gi|315292173|gb|EFU51525.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 153-1] Length = 593 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|328553705|gb|AEB24197.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus amyloliquefaciens TA208] gi|328911447|gb|AEB63043.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus amyloliquefaciens LL3] Length = 606 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ E + S Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEENEHYFEIVFSELS 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + LA +V + L I + ++ + + + ++ Sbjct: 441 RIELILSELLMLAKPQHNAVKERVNLKKIISEVTALLETQANLKGIFIKTDYERDSMFIN 500 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + + + ++K G+ +I + Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVHILMTEDEYSVNVTVKDEGDGIPEN-VLKRIGE 559 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + L ++ + + D K Sbjct: 560 PFLTTKEKGTGLGLMVTFNLIKNHQGAIQVDSKPDKGTAFHITFPK 605 >gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 459 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQ 51 M+ + + ++ L L S + H++ +P+ I E L + E + Sbjct: 217 MSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHDGIVKSKEQEKFYLH 276 Query: 52 LIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I + + M + I + ++Q+ + K + Sbjct: 277 NIMDEAGRLKDLVNDILKLRSMEVGHMEEMEFVVLNKLVNITVERMKQIASAKKTIVKTI 336 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++L NL A + GG V + + + ++K NG Sbjct: 337 TPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLREGFAFIAVKDNGPGIPQ 396 Query: 161 PE---KFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + + V + + ++ E + L Sbjct: 397 EELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVTVESELGKGATFTVFLP 455 >gi|301022435|ref|ZP_07186317.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 69-1] gi|300397536|gb|EFJ81074.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 69-1] Length = 593 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S +++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|300903601|ref|ZP_07121519.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 84-1] gi|300948914|ref|ZP_07162976.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 116-1] gi|300958904|ref|ZP_07171008.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 175-1] gi|301306548|ref|ZP_07212611.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 124-1] gi|301647690|ref|ZP_07247484.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 146-1] gi|300314467|gb|EFJ64251.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 175-1] gi|300404337|gb|EFJ87875.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 84-1] gi|300451610|gb|EFK15230.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 116-1] gi|300838208|gb|EFK65968.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 124-1] gi|301074220|gb|EFK89026.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 146-1] gi|315255154|gb|EFU35122.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 85-1] Length = 593 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|188494704|ref|ZP_03001974.1| signal transduction histidine-protein kinase AtoS [Escherichia coli 53638] gi|188489903|gb|EDU65006.1| signal transduction histidine-protein kinase AtoS [Escherichia coli 53638] Length = 514 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 279 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 338 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 339 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 398 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 399 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 457 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 458 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 505 >gi|300897714|ref|ZP_07116111.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 198-1] gi|300358554|gb|EFJ74424.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 198-1] Length = 593 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S +++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] Length = 815 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 62/232 (26%), Gaps = 19/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 ++I + + + + H++ +P+ AI ELL + Q+I S Sbjct: 455 RDISLAKELDRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPPERVRNYYQIIYKESE 514 Query: 59 SAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108 + + V+ + + + + V + Sbjct: 515 RLTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRTSKHTIVLQFPEYPTFV 574 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + S ++ NL A P GG V + V D + + ++ G Sbjct: 575 LGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKMEDILIEVQDQGVGIPPEHLPHIFD 634 Query: 169 DGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + ++ + L + Sbjct: 635 RFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGEGTTFTIRLPR 686 >gi|298504597|gb|ADI83320.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 411 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 14/226 (6%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 A+ + L L + + + H++ +P+ I +LL E +DE + L Sbjct: 184 AQEHRLEMVRRERLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVT 243 Query: 59 SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEK 108 AI + R G G + + + +++ ++ Sbjct: 244 EAIRLESLVSDLLAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLAT 303 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++LNL ++P GG +T+ + S+ +G+ ++ +I Sbjct: 304 RGNEARLEQLILNLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGIAPHDR-ERIF 362 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + + V L Sbjct: 363 TPFFTTKARGSGLGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 408 >gi|262198819|ref|YP_003270028.1| GAF sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262082166|gb|ACY18135.1| GAF sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 602 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 72/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55 +A++ L ++ + + + HD+ +P+ I +L+ D+ + ++ I Sbjct: 366 LARSRSARSKQERLASIGRMLASVLHDLKTPMTIISGYAQLMAQIDDADQREAYVEQILR 425 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKI 109 + + L + + + + ++ + Sbjct: 426 QFDLMKGMTQEVLLFARGESELLVRRIFVNKFMDELLTQLNHALAGRNIKLTIDPEYRDT 485 Query: 110 DLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E+ +++ NL A ++P GG + I + +F ++ +G PE ++ Sbjct: 486 AHFDEQKILRVMHNLARNAADAMPEGGSLAIRTKTKDGSLVFEVEDSGGGI-PPELDGRL 544 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + E+ + + + L Sbjct: 545 FDLFSSGKQGGTGLGLAIVKKIIEEHGGDITYRSVQGQGTCFTIRLP 591 >gi|238794689|ref|ZP_04638294.1| Signal transduction histidine-protein kinase atoS [Yersinia intermedia ATCC 29909] gi|238725995|gb|EEQ17544.1| Signal transduction histidine-protein kinase atoS [Yersinia intermedia ATCC 29909] Length = 634 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 72/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 K + + + L L L + + H++ +P+ AI +++L + + + ++ + Sbjct: 399 RKEVQRRIEQAERLATLGELMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILK 458 Query: 57 -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110 + L F R G V+ L + +++ + V D Sbjct: 459 EVQSINRVIQQLLDFSRPRIGRYHQVNLNQILRESLILVKTKGVEARVDFHVQLDESLCD 518 Query: 111 LSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + + L + ++ + + ++ ++K NG + ++ Sbjct: 519 IEADGELLKQVLLNILINAVQSIAARGEITISTKKRDEHHQQITIKDNGCGI-TDDIKSK 577 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + + E + +L Sbjct: 578 VFDPFYTTKPSGTGLGLSISQRIITSHDGEIRLESQPNKGTTFIIILP 625 >gi|323701691|ref|ZP_08113363.1| histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533464|gb|EGB23331.1| histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 298 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 73/215 (33%), Gaps = 12/215 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L+++ V L + H+I +P+ + L+LL E + +L +L+ + Sbjct: 71 RLATLSAVGELAAGAAHEIRNPLTTVRGFLQLLREKVTDPRTAELSQLAIEEVDHINNIV 130 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSRERA 116 + IG DI Q+I + + + +++ Sbjct: 131 TSMLQLAKPENGQIGPLDINQIINETWDLYTYSGIRKGISYEKELAYGLPLLAGNAKQIK 190 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL A + G K+ ++ + S+ G PE+ +I + ++ Sbjct: 191 QVLLNLLKNAENACNPGDKIKVNTYVDNHVICLSVTDTGKGI-VPEQLEKIFNPFYTTSS 249 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + +++ + + + Sbjct: 250 SGTGLGLAICNRIVADHQGTIKVDSQPGMGTTFTV 284 >gi|302038577|ref|YP_003798899.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300606641|emb|CBK42974.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1058 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-- 53 M + S L ++ L + + H+I +P+G I N L + + + + Sbjct: 815 MTETKKLEQQIRNSEKLASVGKLAAGVAHEINNPLGGILNCLYNMRKGTLSPSRQEEYLA 874 Query: 54 ------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103 R L F + D + + + + + + Sbjct: 875 SMEDGLRRVQRIVRQLLDFSQQHNPELALADINQVVNRVLLLTDHLFVPHRVQLETALSP 934 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E + ++L+NL + A ++ GG +TI + + ++ +G Sbjct: 935 DIPELMIDRHMMEQVLMNLVLNAIQAMRTGGVLTIRTSMDEAHCLVRIQDSGCGISSS-V 993 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + R+ E + + Sbjct: 994 LPRIFDPFFTTKNEGEGTGLGLSVSLGIVERHGGRIFVESEVGKGTTFTVSIP 1046 >gi|16131833|ref|NP_418431.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli str. K-12 substr. MG1655] gi|89110035|ref|AP_003815.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli str. K-12 substr. W3110] gi|170083464|ref|YP_001732784.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli str. K-12 substr. DH10B] gi|238903060|ref|YP_002928856.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli BW2952] gi|254039260|ref|ZP_04873309.1| sensor protein ZraS [Escherichia sp. 1_1_43] gi|256026319|ref|ZP_05440184.1| sensor protein ZraS [Escherichia sp. 4_1_40B] gi|300947389|ref|ZP_07161582.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300954765|ref|ZP_07167195.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|301023374|ref|ZP_07187164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|301645740|ref|ZP_07245661.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|307140695|ref|ZP_07500051.1| sensor protein ZraS [Escherichia coli H736] gi|331644740|ref|ZP_08345858.1| sensor protein ZraS [Escherichia coli H736] gi|417167|sp|P14377|ZRAS_ECOLI RecName: Full=Sensor protein zraS gi|396342|gb|AAC43101.1| ORF_o465 [Escherichia coli str. K-12 substr. MG1655] gi|1790436|gb|AAC76977.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli str. K-12 substr. MG1655] gi|85676066|dbj|BAE77316.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli str. K12 substr. W3110] gi|169891299|gb|ACB05006.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli str. K-12 substr. DH10B] gi|226838495|gb|EEH70525.1| sensor protein ZraS [Escherichia sp. 1_1_43] gi|238863536|gb|ACR65534.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli BW2952] gi|260451168|gb|ACX41590.1| histidine kinase [Escherichia coli DH1] gi|299880894|gb|EFI89105.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|300318264|gb|EFJ68048.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300452993|gb|EFK16613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|301075989|gb|EFK90795.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|315138560|dbj|BAJ45719.1| sensor protein ZraS [Escherichia coli DH1] gi|315617368|gb|EFU97974.1| sensor protein zraS [Escherichia coli 3431] gi|323933955|gb|EGB30429.1| hsp90-like protein [Escherichia coli E1520] gi|323938880|gb|EGB35100.1| hsp90-like protein [Escherichia coli E482] gi|331036040|gb|EGI08277.1| sensor protein ZraS [Escherichia coli H736] Length = 465 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 238 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 297 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 298 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 357 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 358 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 416 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 417 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 455 >gi|56419479|ref|YP_146797.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|261419163|ref|YP_003252845.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|297530867|ref|YP_003672142.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|319765980|ref|YP_004131481.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|56379321|dbj|BAD75229.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|261375620|gb|ACX78363.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|297254119|gb|ADI27565.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|317110846|gb|ADU93338.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 738 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 72/226 (31%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 K + L +++V L + I H+I +P+ A+ ++LL + ++ Sbjct: 502 RKEMELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSIDGDYSMYFNVIMSE 561 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111 I +F+ LA ++ + + + ++ + + Sbjct: 562 LKRIESIITEFLVLAKPQAVQYKQNDICKIMQDTIDLISAQAMMHNVQIIADFERGLPPV 621 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ A +P+GG +T+ + + S+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGDITVRITRAGCYVRISITDQGCGI-PKDKIKKLG 680 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ ++ E L Sbjct: 681 EPFYTTKERGTGLGLMVSYKIIEEHQGKIEVESEVGVGTTFHITLP 726 >gi|229130818|ref|ZP_04259767.1| hypothetical protein bcere0015_52460 [Bacillus cereus BDRD-Cer4] gi|228652623|gb|EEL08512.1| hypothetical protein bcere0015_52460 [Bacillus cereus BDRD-Cer4] Length = 590 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTGDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGGISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIRSEVGVGTTVTIYLPK 567 >gi|30020746|ref|NP_832377.1| sporulation kinase [Bacillus cereus ATCC 14579] gi|29896298|gb|AAP09578.1| Sporulation kinase [Bacillus cereus ATCC 14579] Length = 407 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 160 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 219 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 220 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTGDKDIIIEC 279 Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG + + + I + G E+ ++ + Sbjct: 280 SENQLKQVFINILQNSIEAMPNGGGISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 338 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 339 PFYSTKEKGTGIGLMLSYKIIESHQGTISIRSEVGVGTTVTIYLPK 384 >gi|312967521|ref|ZP_07781736.1| signal transduction histidine-protein kinase atoS [Escherichia coli 2362-75] gi|312287718|gb|EFR15623.1| signal transduction histidine-protein kinase atoS [Escherichia coli 2362-75] Length = 605 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 370 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 429 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 430 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 489 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 490 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 548 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 549 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 596 >gi|39995579|ref|NP_951530.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982342|gb|AAR33803.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 419 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 14/226 (6%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 A+ + L L + + + H++ +P+ I +LL E +DE + L Sbjct: 192 AQEHRLEMVRRERLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVT 251 Query: 59 SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEK 108 AI + R G G + + + +++ ++ Sbjct: 252 EAIRLESLVSDLLAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLAT 311 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++LNL ++P GG +T+ + S+ +G+ ++ +I Sbjct: 312 RGNEARLEQLILNLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGIAPHDR-ERIF 370 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + + V L Sbjct: 371 TPFFTTKARGSGLGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 416 >gi|225175068|ref|ZP_03729064.1| signal transduction histidine kinase, nitrogen specific, NtrB [Dethiobacter alkaliphilus AHT 1] gi|225169244|gb|EEG78042.1| signal transduction histidine kinase, nitrogen specific, NtrB [Dethiobacter alkaliphilus AHT 1] Length = 376 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 67/225 (29%), Gaps = 15/225 (6%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRL 55 ++ + L + + I H++ +P+ + ++L+ ++ + Sbjct: 140 QQARHMEKLMLAGEIAAGIAHEVRNPLTVVQGYIQLISAKCKKQCNSEDSFSLLLDELNR 199 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----L 111 ++ L+F R V+ + +I + + Sbjct: 200 ANDIISDFLRFSRPDQPQKSQVNPNEVIESSASLIYGEAMRHNVRIFLYPDADMPTVLLD 259 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVD 169 + ++ LNLF A ++P+GG +T+ K+ + +G ++ Sbjct: 260 KDQLIQVFLNLFHNAIQAMPQGGTITVYTGYDKHLDLVTIKVLDSGTGMDAQTA-QRLFS 318 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + H + + + L Sbjct: 319 PFYTTKENGTGLGLSISQSIIHAHGGEIKVDSTPGQGTEFIITLP 363 >gi|91202528|emb|CAJ72167.1| similar to histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 440 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSM 58 +++ L + L A+ + + I H+I +P+ I LL + D +L++ Sbjct: 182 RDLEMRLRKADKLAAIGAMAASIAHEIRNPLNGIEGFSALLARDFEDSDPRKKLVKNIIQ 241 Query: 59 SAIIRLKFMRLAFGYTGSVDSL--------------IGLGDIEQVIEDFIAVDKRVQVSW 104 K + + V + + + + Sbjct: 242 GTKNLNKTVTELLVFARPVRLSLMNSRISEILDRTLFFIKEDMNRNGIDTISIHKEYGAD 301 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 + + ++ LNL + A S+ GG +T+ + + E +K G Sbjct: 302 DYCLKCDAEKLQQVFLNLCLNAIQSMTCGGHLTVFTRTIEGENDNGVVQIGIKDTGVGI- 360 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + D I V + + ++ E + L Sbjct: 361 KKEVVRKMFDLFFTTKQDGTGIGLAIVNKIVEAHNGKIFVESEEGKGTTFYINLP 415 >gi|323171897|gb|EFZ57541.1| signal transduction histidine-protein kinase atoS [Escherichia coli LT-68] Length = 605 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 370 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 429 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 430 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 489 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 490 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 548 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 549 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 596 >gi|170770119|ref|ZP_02904572.1| sensor protein ZraS [Escherichia albertii TW07627] gi|170121001|gb|EDS89932.1| sensor protein ZraS [Escherichia albertii TW07627] Length = 528 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 301 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 360 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + + Sbjct: 361 VSELLELVKPTHLALQTVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPQIQADPDRL 420 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G +++ +S S+ +G + I + Sbjct: 421 TQVLLNLYLNAIQAIGQHGVISVVANESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 479 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 480 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 518 >gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 489 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA ++ S L L S + H++ +P+ I LELL + E + + + Sbjct: 232 MADSLS---RSEQLRRNLVSDVAHELRNPLMNIRGYLELLQDQVLEPTPETLASLYEETS 288 Query: 59 SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + I ++ V + VS + Sbjct: 289 LLNRLVADLQDVSLAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQLTLHVSIPSDLP 348 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 + ++ ++ L A P G++ ++ S+ S++ G Sbjct: 349 HIEADQERVAQILRNLLSNAIRHTPSQGEICLAAGLSEAGVHISVRDTGVGIAPEHLPYL 408 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + ++ E + L Sbjct: 409 FERFYRADFSRARATGGTGLGLAIVKQVVQAHGGQVSVESQVGKGTCFTFTLP 461 >gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 579 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 71/237 (29%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54 AK I + L + L + H++ +PI AI L ++ + + I Sbjct: 341 AKTIEAAKEADKLRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWINEIE 400 Query: 55 LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ + + R+ + D L L Q+I + + +V + Sbjct: 401 QNAERLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRNLVVQVSDT 460 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 K D ++L NL A P G + + + +N + G PE Sbjct: 461 LPLIKCDAE-RIGQVLRNLVENARKFSPPGSNIVVGAERYENGIRVGVLDEGEGI-PPEY 518 Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + R+ E + L Sbjct: 519 HDKIFERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESSPGKGSIFYFTLP 575 >gi|194436351|ref|ZP_03068453.1| sensory box histidine kinase AtoS [Escherichia coli 101-1] gi|253772857|ref|YP_003035688.1| sensory histidine kinase AtoS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162231|ref|YP_003045339.1| sensory histidine kinase AtoS [Escherichia coli B str. REL606] gi|194425079|gb|EDX41064.1| sensory box histidine kinase AtoS [Escherichia coli 101-1] gi|242377855|emb|CAQ32622.1| AtoS sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253323901|gb|ACT28503.1| signal transduction histidine kinase, nitrogen specific, NtrB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974132|gb|ACT39803.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli B str. REL606] gi|253978299|gb|ACT43969.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli BL21(DE3)] gi|323961525|gb|EGB57133.1| hsp90-like protein [Escherichia coli H489] gi|332344001|gb|AEE57335.1| signal transduction histidine-protein kinase AtoS [Escherichia coli UMNK88] Length = 608 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|170019467|ref|YP_001724421.1| sensory histidine kinase AtoS [Escherichia coli ATCC 8739] gi|169754395|gb|ACA77094.1| signal transduction histidine kinase, nitrogen specific, NtrB [Escherichia coli ATCC 8739] Length = 608 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|256830432|ref|YP_003159160.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579608|gb|ACU90744.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 486 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEV 49 + + L L +L L S I H + +P+ I S ++L + + ++ Sbjct: 248 LERRQSQLLQEKKLASLGVLTSGIAHQLNNPLNNISTSCQILQEDLEAALPVDPALTRQM 307 Query: 50 MQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW- 104 + I + L+F R SV + ++ + R+ Sbjct: 308 LDNIYQEVSRSRDIVKGLLEFARETDFCLKSVPLQAVVQRAVTLVSSEVPTGVRILTDIP 367 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFP 161 ++ ++LLNL + A ++ G +++S E + + G P Sbjct: 368 ADIVLPLDNQRFQEVLLNLMINAIHAITPPGVISLSATSEPGSTEAVLQVTDTGAGI-AP 426 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I D + V + ++ + E + L + Sbjct: 427 EHMGRIFDPFFTLKDTGTGLGLSVVFGIIKKHGGTIGVESAVGEGTTFTIRLPR 480 >gi|78222608|ref|YP_384355.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] gi|78193863|gb|ABB31630.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] Length = 547 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59 M +N+ + ++ L +R+ H+I +P+ AI S +L+ + I + +L + Sbjct: 311 MEENLK-RADRLAVIGELSARMAHEIRNPLAAISGSAQLIAQGDGIPEADRELFAIVLRE 369 Query: 60 AIIRL----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 A + + G D + + + F V +V Sbjct: 370 ADRLNGLITDFLAYARPSQPEKGPVNLTDLVGEIVSLVTPDRRFEQVRIINRVEPDFTLP 429 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---------NIFSLKINGNLARF 160 + ++ NLF+ A ++ GG +T+ + ++ +G+ Sbjct: 430 IDPDQFRQVFWNLFVNAAEAMSEGGTITVDAERIDEIRSDGEPRSAYRITVADDGSGMN- 488 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I + S + V + + R+ E + + + Sbjct: 489 QETISRIFEPFYTSKASGTGLGLATVYRIIEAHGGRITVESAEGTGTIFIIFIP 542 >gi|253700202|ref|YP_003021391.1| histidine kinase [Geobacter sp. M21] gi|251775052|gb|ACT17633.1| histidine kinase [Geobacter sp. M21] Length = 829 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 +N+ + +D L +L L + I H++ +P+ I L+ L ++ + + + Sbjct: 603 RENLQEEMMRLDRLASLGKLSAGIAHEVRNPLTGISLLLDDLHDQASSSPEDRDLIKKAL 662 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I L + D + D ++ K GE Sbjct: 663 AEIERVEKLVNALLNYSSPVRADFRECDLNRLVCDTVLLMRRQCERQKVQLSVAEGEVPP 722 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 L + + +LN+ A +LP GG++ ++ + + +G + I Sbjct: 723 LRLDPEKIKQAVLNIVKNAQEALPEGGRIEVATSVQDGYAVIGIGDDGRGIASRDLPL-I 781 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ ++ E + L Sbjct: 782 FEPFFTKKGAGTGLGLSITQRIVEEHRGKIRVESAPGAGTRFTIELP 828 >gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 651 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 58/222 (26%), Gaps = 19/222 (8%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 L L S + H++ +P+ +I ELL ++ + +I ++ + + Sbjct: 421 RLKTELVSTVSHELRTPLTSIIGFTELLRFRKLSAERSEKYLGMIHQETLRLEDLISNLL 480 Query: 69 LAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + + ++ Sbjct: 481 DVQRMESGQQTYHNEPERLSAILEQAIAVHQGSSQHHHITFDCTEDVYVYGDRTRLNQLF 540 Query: 120 LNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173 +NL A PRGG++ + V + + S++ +G Sbjct: 541 MNLLHNAVKYSPRGGEINVRVACERPDWIDISIEDHGIGIPQTALPKLFDKFYRVDNSAS 600 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + +A + + + + L K Sbjct: 601 RKIGGTGLGLAICKEIAEGHGGTIHATSNIGKGSMFTVSLPK 642 >gi|170767436|ref|ZP_02901889.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627] gi|170123770|gb|EDS92701.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627] Length = 608 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 74/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDLMHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLDFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLT-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + H S +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGHGATFSLILP 599 >gi|212639816|ref|YP_002316336.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561296|gb|ACJ34351.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 475 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 72/225 (32%), Gaps = 12/225 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + ++LV L + H+I +P+ I ++LL E ++E + Sbjct: 246 MLERMEIQTQKLELVGTLAASTAHEIRNPLAGIKGFIQLLSEKHKDNESQLYFSVIQNEI 305 Query: 61 IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKI 109 + D + I +IE + V Sbjct: 306 TRINDIVNEFLILGKPTAQKLETCDLNYIVQSIHPMIESQAHLHNVVYTFQRADVPLPIR 365 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++LNL A ++ GG++TIS+ + + + NG + +++ Sbjct: 366 CSKDHLKQVVLNLAKNAIEAMADGGELTISLTKQNDWAVLHVIDNGGGI-PNDIKSKLFQ 424 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + ++ + I+ ++ L Sbjct: 425 PFVTSKQTGTGLGLVVCKRIVDMHEGTIDIHSIEKKGTTITVRLP 469 >gi|159900772|ref|YP_001547019.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893811|gb|ABX06891.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 804 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 21/233 (9%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 + + L + L A+ L + + H++ +P+ +I ELL D + I Sbjct: 417 RRRLELQLLQAEKLSAIGQLVAGVAHELNNPMTSIKGFAELLLRRKDLDDDARTDLNYIN 476 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111 + A + + L+ + + + RV + + Sbjct: 477 NQAERAARIVTNLLTFAREHQPQRVLVDVNKVIDDTLSLHSYHLRVDNIKVQRQFEPELP 536 Query: 112 -----SRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ LNL AH ++ G +T+ + +E ++ G Sbjct: 537 TTVADPYQLQQVFLNLIGNAHQAMAEKGGGGFLTVKTERVDDEIRINIGDTGPGI-PQHL 595 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + H++ + + + + L Sbjct: 596 VGRIFDPFFTTKPVGKGTGLGLSICYNILHDHGGNIWVDSVANEGTTFHLALP 648 >gi|332093888|gb|EGI98942.1| signal transduction histidine-protein kinase atoS [Shigella boydii 5216-82] Length = 555 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 74/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 320 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 379 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 380 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 439 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S + S++ NG + Sbjct: 440 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDLQQAISIEDNGCGIDLS-LQKK 498 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 499 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 546 >gi|311029478|ref|ZP_07707568.1| two-component sensor histidine kinase [Bacillus sp. m3-13] Length = 552 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 11/223 (4%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQL 52 + + S L + L + + H+I +P+ + + LL + E E ++ Sbjct: 323 KRTEEALMQSEKLSVIGELAAGVAHEIRNPVTVLKGFVHLLSKESREKEFFTIMDKELER 382 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQVSWTGEKIDL 111 I + + K + + + + + V + V Sbjct: 383 INQITNEFMALAKPQAIKIKRQNLKELIQEVCIFLESEAFIHQVVMEVVHFEEYIWLECE 442 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++L+NL ++P GGK+TI Q +K GN E ++ Sbjct: 443 PNQIKQVLINLIKNGMEAMPDGGKITIDTQVVDGYVNLVIKDEGNGI-PEEVINKVGQPF 501 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + +L + + + LL Sbjct: 502 FTTKEQGTGLGLMVSMKIIENHGGQLTIQSEEKVGSTVEILLP 544 >gi|78223873|ref|YP_385620.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78195128|gb|ABB32895.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 395 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K + S L +L L + + H+I +P+ +I+ +LL E E + I Sbjct: 166 LQKAQAEIVQSEKLASLGYLSAGMAHEIRNPLNSINLFAQLLKSGCEEPEKLDYIDKILK 225 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107 L + V + +V + R Sbjct: 226 EVDRIDDIMRKLLDASKRPRFQLSEVRLDRVIDATLEVFRPQTTLYGIEVVRAFRRVPPP 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ A + GG + + + E I + G P+ +I Sbjct: 286 FQADPSEIEQIFTNLFLNAIHEMQEGGTLAVLLDHDDREVIIRISDTGRGM-PPDNVKKI 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + + ++ E D+ + L Sbjct: 345 FDPFFTTKTSGSGLGLAVVLRIVKTYQGKITVEKSDETGTTFAIRLP 391 >gi|110642429|ref|YP_670159.1| sensory histidine kinase AtoS [Escherichia coli 536] gi|191170106|ref|ZP_03031660.1| sensory box histidine kinase AtoS [Escherichia coli F11] gi|110344021|gb|ABG70258.1| sensor protein AtoS [Escherichia coli 536] gi|190909622|gb|EDV69207.1| sensory box histidine kinase AtoS [Escherichia coli F11] Length = 608 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|261404707|ref|YP_003240948.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261281170|gb|ACX63141.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 574 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 68/222 (30%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53 + N+ + LV + + I H+I +P+ + L+L+ E + E + Sbjct: 336 RTEFINVERLSLVGQMAASITHEIRNPMAVVRGFLQLMKEKSPDTLDHYYRIVMEELDRA 395 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112 + + D + L + + + +++ + E + Sbjct: 396 NGIISDFLSLAQNRAAEKEECHLHDIIHELSPLLWADANLRGQNIELKLGTGIPELYLNA 455 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +E +++LNL ++ G +TI + N + G E ++ + Sbjct: 456 KEMKQLILNLCRNGMEAMDDKGTLTIETRLEGNLAQLYVADTGIGIPENEL-ERLFEPFF 514 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + V Sbjct: 515 TTKSKGTGLGLALCMSIVQRHHGTIDVKSHLGEGTVFIISFP 556 >gi|225572887|ref|ZP_03781642.1| hypothetical protein RUMHYD_01078 [Blautia hydrogenotrophica DSM 10507] gi|225039752|gb|EEG49998.1| hypothetical protein RUMHYD_01078 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 13/221 (5%) Query: 6 CFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 L + LL S+I H+I +P+ I ++L+L+ E S Sbjct: 4 NEQLEQLKSETQLLISKISHEIRNPVALIQSTLDLMAIRHPEITQFDEWDDIMDSMDYLK 63 Query: 65 KFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 + + + + + + + + + L + Sbjct: 64 GLLNDVSEFNNATRLHLQPTHMKEFLTATFRSLQPTLDYLFIHLVTELNLPETPLLIDPT 123 Query: 115 -RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LLNL A+ + P G + + I ++ NG + T + V Sbjct: 124 KFRQALLNLLRNAYEASPMHGIIHFYAFSKDSLLILQIEDNGCGIPPEDLST-LFQPFVT 182 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 183 HKKGGTGLGLTITKQIIEAHNGTITVESSPGKGTKFTITLP 223 >gi|298504718|gb|ADI83441.1| sensor histidine kinase, HAMP domain-containing, 1-2 heme-binding sites [Geobacter sulfurreducens KN400] Length = 536 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 54/226 (23%), Gaps = 16/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + S L +L L + I H+I +P+ I L+ + LI + Sbjct: 291 QAQLVHSEKLASLGELVAGIAHEINNPLTGILVFASLMASDKKLDPSLKADLDLIVKETQ 350 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + + + I V+ D V + + ++ Sbjct: 351 RCAKIVKGLLDFSRESIPQKKPSSINAIMDATLTLVVHQSCFHDITVVKEYNPDIPEMLL 410 Query: 114 ERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +I + + + +E ++ G Sbjct: 411 DPHQIEQVFINLLLNACHAIAGSGEVHIRTGFDHVNDEVSVAITDTGCGIPDEIIGKIFD 470 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + + L Sbjct: 471 PFFTTKETKGTGLGLSVSYGIIEGHGGRIDVQSTVGAGTTFTVRLP 516 >gi|117624413|ref|YP_853326.1| sensory histidine kinase AtoS [Escherichia coli APEC O1] gi|215487438|ref|YP_002329869.1| sensory histidine kinase AtoS [Escherichia coli O127:H6 str. E2348/69] gi|218559137|ref|YP_002392050.1| sensory histidine kinase AtoS [Escherichia coli S88] gi|306814667|ref|ZP_07448829.1| sensory histidine kinase AtoS [Escherichia coli NC101] gi|331658299|ref|ZP_08359261.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA206] gi|115513537|gb|ABJ01612.1| sensor protein AtoS [Escherichia coli APEC O1] gi|215265510|emb|CAS09912.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli O127:H6 str. E2348/69] gi|218365906|emb|CAR03648.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli S88] gi|222033981|emb|CAP76722.1| Signal transduction histidine-protein kinase atoS [Escherichia coli LF82] gi|281179311|dbj|BAI55641.1| two-component sensor kinase [Escherichia coli SE15] gi|294493595|gb|ADE92351.1| sensory box histidine kinase AtoS [Escherichia coli IHE3034] gi|305852061|gb|EFM52513.1| sensory histidine kinase AtoS [Escherichia coli NC101] gi|307626242|gb|ADN70546.1| sensory histidine kinase AtoS [Escherichia coli UM146] gi|312946841|gb|ADR27668.1| sensory histidine kinase AtoS [Escherichia coli O83:H1 str. NRG 857C] gi|320196091|gb|EFW70715.1| Sensory histidine kinase AtoS [Escherichia coli WV_060327] gi|323188053|gb|EFZ73348.1| signal transduction histidine-protein kinase atoS [Escherichia coli RN587/1] gi|323952013|gb|EGB47887.1| hsp90-like protein [Escherichia coli H252] gi|323955987|gb|EGB51740.1| hsp90-like protein [Escherichia coli H263] gi|330912050|gb|EGH40560.1| sensory histidine kinase AtoS [Escherichia coli AA86] gi|331056547|gb|EGI28556.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA206] Length = 608 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|39995706|ref|NP_951657.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982470|gb|AAR33930.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 516 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 54/226 (23%), Gaps = 16/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + S L +L L + I H+I +P+ I L+ + LI + Sbjct: 271 QAQLVHSEKLASLGELVAGIAHEINNPLTGILVFASLMASDKKLDPSLKADLDLIVKETQ 330 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + + + I V+ D V + + ++ Sbjct: 331 RCAKIVKGLLDFSRESIPQKKPSSINAIMDATLTLVVHQSCFHDITVVKEYNPDIPEMLL 390 Query: 114 ERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +I + + + +E ++ G Sbjct: 391 DPHQIEQVFINLLLNACHAIAGSGEVHIRTGFDHVNDEVSVAITDTGCGIPDEIIGKIFD 450 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + + L Sbjct: 451 PFFTTKETKGTGLGLSVSYGIIEGHGGRIDVQSTVGAGTTFTVRLP 496 >gi|307554286|gb|ADN47061.1| sensor protein AtoS for response regulator AtoC [Escherichia coli ABU 83972] Length = 608 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|91211513|ref|YP_541499.1| sensory histidine kinase AtoS [Escherichia coli UTI89] gi|331647874|ref|ZP_08348966.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M605] gi|91073087|gb|ABE07968.1| sensor protein AtoS [Escherichia coli UTI89] gi|331043598|gb|EGI15736.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M605] Length = 612 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603 >gi|301019444|ref|ZP_07183617.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300399259|gb|EFJ82797.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] Length = 465 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 238 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 297 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 298 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 357 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 358 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 416 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 417 AEGTGLGLAVVHNIVEQHGGTIQVASQEGEGATFTLWLP 455 >gi|218779811|ref|YP_002431129.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761195|gb|ACL03661.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 495 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 70/231 (30%), Gaps = 20/231 (8%) Query: 2 AKNICFNLS-----SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 L + L +L + + + H+I +P+G I +S ELL + + QL+ Sbjct: 256 RAEERLKLEEQLSRAERLASLGEMAAGVSHEIRNPLGIIRSSAELLGKR-YDGPNRQLLE 314 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTG 106 + + + + + + + V+ Sbjct: 315 VIIEESTRLNDIITDFLNFARPTEPRFQECSVAGVLGKNLAFLAPRLNQDGYHVEQEAPS 374 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + + LN+ + A ++P GG V + + + S G E Sbjct: 375 DLPMVWADPNLLYQSFLNILINAMQAMPAGGTVHVKTRIQGEKLSVSFTDEGKGV-TDEA 433 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + + E +D + L Sbjct: 434 MKKIWNPFFTTKERGTGLGLCVVRNIIEAHGGSVTIENSEDKGACVRVELP 484 >gi|74312741|ref|YP_311160.1| sensory histidine kinase AtoS [Shigella sonnei Ss046] gi|73856218|gb|AAZ88925.1| sensor protein AtoS for response regulator AtoC [Shigella sonnei Ss046] Length = 608 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|16130156|ref|NP_416723.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. MG1655] gi|89109038|ref|AP_002818.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. W3110] gi|157161703|ref|YP_001459021.1| sensory histidine kinase AtoS [Escherichia coli HS] gi|170081839|ref|YP_001731159.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. DH10B] gi|238901394|ref|YP_002927190.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli BW2952] gi|256022098|ref|ZP_05435963.1| sensory histidine kinase AtoS [Escherichia sp. 4_1_40B] gi|301024239|ref|ZP_07187934.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 196-1] gi|307138878|ref|ZP_07498234.1| sensory histidine kinase AtoS [Escherichia coli H736] gi|312973527|ref|ZP_07787699.1| signal transduction histidine-protein kinase atoS [Escherichia coli 1827-70] gi|732226|sp|Q06067|ATOS_ECOLI RecName: Full=Signal transduction histidine-protein kinase AtoS gi|290419|gb|AAA23449.1| ORF-1 [Escherichia coli] gi|1736874|dbj|BAA16015.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K12 substr. W3110] gi|1788549|gb|AAC75279.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. MG1655] gi|157067383|gb|ABV06638.1| sensory box histidine kinase AtoS [Escherichia coli HS] gi|169889674|gb|ACB03381.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. DH10B] gi|238863521|gb|ACR65519.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli BW2952] gi|260448687|gb|ACX39109.1| signal transduction histidine kinase, nitrogen specific, NtrB [Escherichia coli DH1] gi|299880502|gb|EFI88713.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 196-1] gi|310332122|gb|EFP99357.1| signal transduction histidine-protein kinase atoS [Escherichia coli 1827-70] gi|315615481|gb|EFU96113.1| signal transduction histidine-protein kinase atoS [Escherichia coli 3431] gi|320199814|gb|EFW74403.1| Sensory histidine kinase AtoS [Escherichia coli EC4100B] gi|323936834|gb|EGB33119.1| hsp90-like protein [Escherichia coli E1520] gi|323941086|gb|EGB37273.1| hsp90-like protein [Escherichia coli E482] Length = 608 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|225181177|ref|ZP_03734623.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168146|gb|EEG76951.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 603 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 16/235 (6%), Positives = 66/235 (28%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 + + + + H++ +P+ + + E L E + + Sbjct: 360 KERELIRIQQE-----FVANVSHELRTPLTTMKSYTETLLGGAMYEPETCLSFLSTMEKE 414 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + + + +V V++ T Sbjct: 415 TERMVRLVKDLLALSQLDYRQVAWRKEKLPLNELVSEVVNELRVKFQEEPRHVTVELPET 474 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 R++ ++L+N+ + G + I+++ ++++ + + +G + Sbjct: 475 TVWHCFDRDKMKQVLINVIQNSFKYTAEHGLIRIALEVAEDQAVIHVADDGIGIPPEDVK 534 Query: 164 --FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + L Sbjct: 535 RVFDRFYRVDKARSRDFGGTGLGLSIAREIVEAHGGSITVCSEPEKGTQFTISLP 589 >gi|26248608|ref|NP_754648.1| sensory histidine kinase AtoS [Escherichia coli CFT073] gi|26109013|gb|AAN81216.1|AE016763_175 Sensor protein atoS [Escherichia coli CFT073] Length = 612 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603 >gi|323977583|gb|EGB72669.1| hsp90-like protein [Escherichia coli TW10509] Length = 605 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 370 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 429 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 430 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 489 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 490 ISADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 548 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 549 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 596 >gi|331663725|ref|ZP_08364635.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA143] gi|284922211|emb|CBG35293.1| two-component system sensor kinase [Escherichia coli 042] gi|331059524|gb|EGI31501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA143] Length = 608 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S +++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|331642849|ref|ZP_08343984.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H736] gi|331039647|gb|EGI11867.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H736] Length = 612 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603 >gi|218705750|ref|YP_002413269.1| sensory histidine kinase AtoS [Escherichia coli UMN026] gi|218432847|emb|CAR13741.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli UMN026] Length = 608 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S +++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|52080050|ref|YP_078841.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52785425|ref|YP_091254.1| KinC [Bacillus licheniformis ATCC 14580] gi|52003261|gb|AAU23203.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52347927|gb|AAU40561.1| KinC [Bacillus licheniformis ATCC 14580] Length = 445 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 N + S L L + I H++ +P+ +++ L+L+ E + +I Sbjct: 199 KSNQRLAMQSQKLAMAGQLAAGIAHEVRNPLTSVNGFLQLMKAEYPDRKDYFDIIFSEIK 258 Query: 59 SAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKI 109 L + + L + ++E I ++K Q E Sbjct: 259 RIDSVLGELLVLAKPHQVQFKKIKINSVLQQVATLLETNAVLSHIKIEKAFQHGEEWEIN 318 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL ++P GGK+TIS + + S+K G + ++ + Sbjct: 319 GDENQIKQVFINLIKNGIEAMPDGGKITISSKAEGDCVKISIKDEGGGISQADL-AKLGE 377 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + LL Sbjct: 378 PFFSTKEEGTGLGLTICLNIIGAHNGEMKIDSKLGEGSTFHILLP 422 >gi|331673738|ref|ZP_08374501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA280] gi|331069011|gb|EGI40403.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA280] Length = 612 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S +++ Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 496 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603 >gi|332083894|gb|EGI89107.1| sensor protein zraS [Shigella boydii 5216-82] Length = 328 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 101 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 160 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + Sbjct: 161 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 220 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 221 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 279 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 280 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 318 >gi|293405686|ref|ZP_06649678.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412] gi|298381368|ref|ZP_06990967.1| signal transduction histidine-protein kinase atoS [Escherichia coli FVEC1302] gi|291427894|gb|EFF00921.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412] gi|298278810|gb|EFI20324.1| signal transduction histidine-protein kinase atoS [Escherichia coli FVEC1302] Length = 612 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S +++ Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 496 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603 >gi|95928936|ref|ZP_01311681.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134837|gb|EAT16491.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 649 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 18/230 (7%) Query: 2 AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52 +N + +L L S + H+I +P+G I ++ E + Sbjct: 413 TQNQEMQASLAQHGKMASLGVLSSGVAHEINNPLGVILGYAGYIENKIGEKDPNYHYIHE 472 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 I+ S ++ + SV + + I DF A + + Sbjct: 473 IKRESKRCRKIVQDLLSYARTPQSVLEKTDINALLDQIVDFAANHTDMHHVTIVKNLSPG 532 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ +NL + A ++ G++ + + + + + +G E Sbjct: 533 LPELNIDGDQMRQVAINLILNAGGAIKDHGRLEVETRRDNEDILIIFRDSGVGI-EQEIL 591 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + ++ + ++ L Sbjct: 592 ERIFEPFFTTKEKGTGLGLAISKQIIEQHHGSIHMTSTPGVGTTVTVRLP 641 >gi|320178807|gb|EFW53770.1| Sensory histidine kinase AtoS [Shigella boydii ATCC 9905] Length = 608 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|331653654|ref|ZP_08354655.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M718] gi|331048503|gb|EGI20579.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M718] Length = 612 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S +++ Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 496 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603 >gi|294500801|ref|YP_003564501.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294350738|gb|ADE71067.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 538 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M K + M+ + L + + H+I +P+ + L+L + E + L+ Sbjct: 312 MQKELQ-RAEKMNAIGQLAASVAHEIRNPMTVVKGFLQLFQDNTKLSNTELSYIHLMINE 370 Query: 57 SMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 A + + + + + Sbjct: 371 MDRAEAIIHDYLSLAKPDVHQHRFINCLECVTSLVDLLSSYALLTNNILIELDAKEEMYV 430 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++LLN+ ++ GG + + + + ++ G E+ ++ Sbjct: 431 RGSRNELNQVLLNIMKNGIEAMRNGGTLRVGLYKREGHVHIQIEDTGIGM-TSEQVNRLG 489 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L + R+ E I + + Sbjct: 490 TAFYSLKEKGTGIGLMVSYQLVEQMNGRIEVESIPGKGSTFTLIFP 535 >gi|309702530|emb|CBJ01857.1| two-component system sensor kinase [Escherichia coli ETEC H10407] Length = 608 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 74/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S + S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDLQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|256831084|ref|YP_003159812.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580260|gb|ACU91396.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 408 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 64/246 (26%), Gaps = 33/246 (13%) Query: 1 MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-------------- 43 M K + + LL + + H+I +P+ AI E L Sbjct: 152 MEKEYQAKYYQAEKMATIGLLAAGVAHEINNPLAAISGFSEALKRRLPYLGTLLDKDTEQ 211 Query: 44 -------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 +++ L F ++D + +++ I + Sbjct: 212 GILEDFTDYTTTILEECNRCRDIVGNLLSFSSQKTCKFNTIDLNSLVAGSLKILHHQIKL 271 Query: 97 DKRVQVSWTGEKIDLSRER-----AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFS 150 + + ++ ++LLNL + A ++ + D + Sbjct: 272 HPGITLHQDLCPEPVTIRGAQGELKQVLLNLVLNAMDAIESKGSITIRTSMDRPDRAALI 331 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVV 208 ++ G PE ++ + H I + + + Sbjct: 332 VEDTGQGI-PPETLDKLFIPFFTTKTKGHSIGIGLSICYNIIKMHGGEIHVCSEPGKGSA 390 Query: 209 LSALLE 214 +L Sbjct: 391 FRVMLP 396 >gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42] gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42] Length = 579 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 64/221 (28%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 + + H++ +PI +I E L + ++DE +++ L + Sbjct: 356 FVANVSHELKTPITSIKGFTETLLDGAMKDEKALSDFLSIILKESERLQSLVQDLLDLSK 415 Query: 69 LAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120 + I + Q+ E I ++ + ++ L Sbjct: 416 MEQQNFTMRVESFDAAKILHEIEALLRHKAEEKGISFQLDLPEEPIFVTGDAHRLKQVFL 475 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P G V ISV + + G + E +I + Sbjct: 476 NLANNALTYTPEKGTVGISVHVKETVVDIKVSDTGIGIQKEEIP-RIFERFYRVDKDRSR 534 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ ++ V + L++ Sbjct: 535 NSGGTGLGLAIVKHLIEAHEGKIEVTSEPGQGTVFTVTLKR 575 >gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 589 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 61/219 (27%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 L + + H++ +P+ +I +E + + + +++I ++ ++ + Sbjct: 365 LVANVSHELRTPLTSIRGFIEAILDGTISDPEAQRHYLKVIHQETVRLTRLIRELLDLAQ 424 Query: 70 -----AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE---KIDLSRERAKILL 120 ++ + + + V+V + + ++L Sbjct: 425 MEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLPLMLANEDRMEQVLT 484 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175 NL A P G VT+ + G + + + + + Sbjct: 485 NLVENAIRYSPPGKTVTVKAGSDNGLVQIEVSDEGPGIPEEDLPYIWDRFHRVEKSRSRS 544 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ + Sbjct: 545 LGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIP 583 >gi|163846956|ref|YP_001635000.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|163668245|gb|ABY34611.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] Length = 797 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 68/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 + + S L AL L + + H++ +P+ +I +LL ++ IR Sbjct: 418 RRLEQQLIQSDKLSALGQLVAGVAHELNNPLASISGYAQLLMRNRTLPEDVRADVEQIRQ 477 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110 + A ++ + + L+ + ++ Q + VQ+ E Sbjct: 478 QADRASRIVRNLLMFAREHKPERLLVQINEVVQSTLSLQAYQLRVDNITVQLELDPELPQ 537 Query: 111 LSRERAKILLNLFM---VAHASLPRG------GKVTISVQDSKNENIFSLKINGNLARFP 161 + ++ L A ++ + + ++ G Sbjct: 538 TLADPHQLQQVLLNLITNARQAMSEKGSGVLTIRTRNCETGDGSFIEITVSDTGIGIPAQ 597 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + E+K ++ E + + L Sbjct: 598 YL-DKIFNPFFTTKPVGQGTGLGLSICYGIIQEHKGQIWVESHEGIGTTVFIRLP 651 >gi|293410583|ref|ZP_06654159.1| sensory histidine kinase AtoS [Escherichia coli B354] gi|291471051|gb|EFF13535.1| sensory histidine kinase AtoS [Escherichia coli B354] Length = 608 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARIDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|225181550|ref|ZP_03734992.1| signal transduction histidine kinase, nitrogen specific, NtrB [Dethiobacter alkaliphilus AHT 1] gi|225167798|gb|EEG76607.1| signal transduction histidine kinase, nitrogen specific, NtrB [Dethiobacter alkaliphilus AHT 1] Length = 544 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSM 58 + + LVA L + H+I +P+ + L++L + E +L+ Sbjct: 318 EAEMLQMEKFSLVAELAAGTAHEIRNPMTTMRGFLQILAKEFKSGTKGYEYCELMIEEID 377 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------- 110 A +K L L I + I I ++ ++ Sbjct: 378 RANAIIKEFLLLTKPAAPNLRECDLHVILEEIFMLIESKSLLEDVKLNKRYAKSLPLVEA 437 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ LNL A ++P GG++TI+ S + G + ++ D Sbjct: 438 DPAQIKQVFLNLATNAIQAMPAGGELTIATSVSNGTVVVRFTDTGCGIEEAQL-ARLFDP 496 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ RL + L Sbjct: 497 FFTTKEQGTGLGLTISYRIIEGHRGRLHADSTPGKGTTFYVELP 540 >gi|324006599|gb|EGB75818.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 57-2] Length = 593 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILHQQTRDPIHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584 >gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 473 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 69/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDL--VAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A + ++ + A + + H++ +P+ I E + + + Sbjct: 233 LAAELEKRIAELKRMDAARRDFVAAVSHELRTPLSIIQGYTEAILDGMVTPEEMKLYLDT 292 Query: 53 IRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 IR + ++ + + Q + + V+ Sbjct: 293 IREEVERLKRLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLHFHVE 352 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 VS + ++++NL A P GG VT+ V+ + E + +++ G Sbjct: 353 VSPRSLVLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPEEVVLTVQDTGPGIPPE 412 Query: 162 E---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + V + + R+ + L Sbjct: 413 ELPYIWEKFYRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFKVTLP 470 >gi|323967661|gb|EGB63073.1| hsp90-like protein [Escherichia coli M863] gi|327252488|gb|EGE64147.1| signal transduction histidine-protein kinase atoS [Escherichia coli STEC_7v] Length = 608 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 493 ISADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|319646172|ref|ZP_08000402.1| sensor protein [Bacillus sp. BT1B_CT2] gi|317391922|gb|EFV72719.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 445 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 N + S L L + I H++ +P+ +++ L+L+ E + +I Sbjct: 199 KSNQRLAMQSQKLAMAGQLAAGIAHEVRNPLTSVNGFLQLMKAEYPDRKDYFDIIFSEIK 258 Query: 59 SAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKI 109 L + + L + ++E I ++K Q E Sbjct: 259 RIDSVLGELLVLAKPHQVQFKKIKINSVLQQVATLLETNAVLSHIKIEKAFQHGEEWEIN 318 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL ++P GGK+TIS + + S+K G + ++ + Sbjct: 319 GDENQIKQVFINLIKNGIEAMPDGGKITISSKAEGDYVKISIKDEGGGISQADL-AKLGE 377 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + LL Sbjct: 378 PFFSTKEEGTGLGLTICLNIIGAHNGEMKIDSKLGEGSTFHILLP 422 >gi|148265761|ref|YP_001232467.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399261|gb|ABQ27894.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 367 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 18/229 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + + ++ L + + H+I +P+G+I + E+L + E ++++ + Sbjct: 139 EEQLRRAERLSVLGELSAVLAHEIRNPLGSIKGTAEILKDSFRPGESNYEFLEILLKETD 198 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWTGEKIDL 111 ++ + + I V + + Sbjct: 199 RLNRVVEDFLGLARPLQVERATCDIMAELNEIVTLISTEAAARGVSIELNPAELPAVHGD 258 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------ENIFSLKINGNLARFPEKFT 165 + + LNL M + RGGK+T+S S G P++ Sbjct: 259 REKLRQAFLNLLMNGLQATGRGGKLTVSASCPGPAEESPAVVELSFADTGEGI-EPDRLN 317 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + D + + + + + L Sbjct: 318 RIFEPFFTTKPDGTGLGLAITQKIVESHGGSIQVASEKGKGTTFTVRLP 366 >gi|116749986|ref|YP_846673.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116699050|gb|ABK18238.1| GAF sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 540 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 A+ + L L AL L + I H+I +P+ I+ + ++L + D+V+ Sbjct: 286 ARKLEQRLQQTERLKALGTLAAGIAHEIRNPLATINFNTQMLQRELHLDAAQQQMFDDVL 345 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKI 109 + IR L F R + + + + + V + + Sbjct: 346 KEIRKMDRIVQQVLHFARPREPQFQPNQLNEVVRYCMDMAKAYLVKANVVVCLDTSDGLP 405 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-----FSLKINGNLARFPEKF 164 + + ++I + V ++ ++ + + G E Sbjct: 406 SVVMDFSQICQVVMNVIINAIESMPNGGNLTVATERQADPPSLVLQVTDTGTGI-LEEDK 464 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ + E + Sbjct: 465 DRIFDPFFTRKPEGTGMGLSISRQILEKHGAFVDVETEPGKGTTFRIIFP 514 >gi|170680522|ref|YP_001744413.1| sensory histidine kinase AtoS [Escherichia coli SMS-3-5] gi|218700688|ref|YP_002408317.1| sensory histidine kinase AtoS [Escherichia coli IAI39] gi|170518240|gb|ACB16418.1| sensory box histidine kinase AtoS [Escherichia coli SMS-3-5] gi|218370674|emb|CAR18483.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli IAI39] Length = 608 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|89519319|gb|ABD75796.1| putative A-signal production regulator [uncultured bacterium] Length = 389 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + S L ++ L SRI H++ +PI I +ELL + +E + + S Sbjct: 150 LQEAQHKLIQSEKLASIGRLASRIAHELRNPIQGIRMGIELLRQELMEPNHPEGFQESCR 209 Query: 59 ---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--- 100 L++ R D + I + + + + Sbjct: 210 TNLQHIDQEITVANTIVKDLLEYARDMKFDFTEADVNEIIDGILFNLSEKVTDAQITVTP 269 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLAR 159 S G + ++N+ ++ GG +TI+ ++ +++ G Sbjct: 270 HYSDIGTITADGIRIRQAIMNIIQNGIEAMSPGGTMTITTASHGDDAIRITIQDTGCGM- 328 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + + + V + + + + L Sbjct: 329 TDEQQQRLFEPFFTTKEKGVGLGMSIVHRIIETHGGTIDIDSTPGSGTTFMITLP 383 >gi|253701161|ref|YP_003022350.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251776011|gb|ACT18592.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 396 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + S L +L L + + H+I +P+ +I ++L+ E E + + Sbjct: 166 LRRAQAEVVQSEKLASLGYLSAGMAHEIRNPLNSIALFVQLIKSGLDEHERLDYVEKILK 225 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L + S Sbjct: 226 EVDRIDNILAKLLDASKRPKFEISEVRVDRVLEHTLDAFTPQLRQKRIRAVTDFKSIPPA 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ + +P G + + + + + G PE I Sbjct: 286 IKADPMEIEQIFTNLFLNSIYVMPEEGTLAVELAGDEQWITVRVSDTGPGI-PPENLPNI 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + K ++ E D L Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKTYKGKIEVEKSDSSGTTFLVRLP 391 >gi|317050222|ref|YP_004111338.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945306|gb|ADU64782.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 535 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 73/228 (32%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + + + L A+ L + + H++ +P+ AI ++ E E + Sbjct: 292 LRETQAQMVRAETLAAVGTLAAGVSHEVSTPLNAITGFCRIMLEEVDESHPLYEDLKVVE 351 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109 Q L+F R+ T L + ++ + ++ + Sbjct: 352 QEALRCRRIVQSLLQFARVPSHSTSLACVNELLDETMTLVSYQTATKGITIDRDFSSDLP 411 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 D+S + ++ L A ++ G++ I ++ + ++ +G E+ + Sbjct: 412 DVSADPMQLKQVLLNIVLNAIQAMEGRGRLHIRTFTLRDTVMIAITDSGPGI-PAEQQQK 470 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E +L E ++ L Sbjct: 471 IFQPFYTTKSGGTGLGLAISYGIIKEYGGDILLESAPGKGTTVTITLP 518 >gi|295705390|ref|YP_003598465.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294803049|gb|ADF40115.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 460 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 59/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK++ ++ S + H+I SP+ +I + L + DE Sbjct: 229 MAKSLEQL---EEMRQEFVSNVSHEIQSPLASIQGFSKTLRSANLSDEQRNEYLSIIEEE 285 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D + W+ + +L+ E Sbjct: 286 SRRMSSLSKQLLTLASLDKESEHIEKSTFDVAAQIKQVLFMTEWSWREKELAIEMDLPST 345 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL + GG +++ + + G Sbjct: 346 MISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRIGMEDTHCHVEFQDTGIGISKESLPHI 405 Query: 167 IVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T S + V + + + E L K Sbjct: 406 FNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKGKGSTFHVYLPK 459 >gi|331683896|ref|ZP_08384492.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H299] gi|331078848|gb|EGI50050.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H299] Length = 608 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTGDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARIDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|189424888|ref|YP_001952065.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421147|gb|ACD95545.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 839 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 14/223 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + L +L L + I H+I +P+ I L+ L + + E++ Sbjct: 607 REETVRLERLASLGKLAAGISHEIRNPLTGISLLLDDLHDRAQLGDKDREMLTKAMAEIE 666 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDL 111 + + S + G+ + + + + Q S + Sbjct: 667 RMERLISALLTFAAPPRSRFAPGDPGEAAEDVVMLMQRSCQRQGIVLSLERSPLPTCLID 726 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + + LLNL A +LP GG +T ++ ++ + ++ +G+ + I + Sbjct: 727 AEKIRQALLNLLKNALEALPLGGMITTTISRDDHDALITVSDSGHGIPPQDLPL-IFEPF 785 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ + + H+ L Sbjct: 786 FTRKGAGTGLGLSITRQIVEEHGGSISVDSEPGHSTTFRIRLP 828 >gi|206889206|ref|YP_002249288.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741144|gb|ACI20201.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 884 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + +S + AL + +++ H+I +P+ AI + LD+ E++ + I++ Sbjct: 637 LRNLKEKIISMEKMAALGEMAAKVAHEIRNPLLAIGGFAKRLDKDLKEEKSKEYIKVIIE 696 Query: 59 SAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + + + + + +V V Sbjct: 697 EVKRLERILNEILSFVKPYPIGKESFKIKGLVDNVINFVESTLKENNNEFKVIVKEDFSV 756 Query: 109 IDLSRERAKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLA 158 + ++LLNL A+ + K + ++ G Sbjct: 757 PGNYDKLKEVLLNLISNANEATKDGLITLKIEKADKLPVEIPDIQKEYLLIEVEDTGCGI 816 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E +I D + I + + E+ + E + + L Sbjct: 817 Q-KENLKRIFDPFFTTKISGTGLGLAISKRIVEEHGGIIKVESEINKGTIFRVYLP 871 >gi|256830706|ref|YP_003159434.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579882|gb|ACU91018.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 586 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53 + + L AL L + + H+I +P+ +I L + ++Q Sbjct: 355 RRLQEQVRRNERLTALGNLAAGVAHEIRNPLSSIKGFATYLAGKVQGQDQDAARAMIQET 414 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKI 109 + L+F R D + +++ + Sbjct: 415 DRLNRVVSELLEFARPGEMKLRDEDLAQVVERALRLVRADVTAKNVAVHFEQAGTLPRVP 474 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQI 167 + LLNLF+ A ++ +GG + I+ + + G+ E I Sbjct: 475 LDPERFTQALLNLFLNAVQAMDQGGTLRITAAQEPDAGGVALRIADTGHGM-AAELVPDI 533 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + E + V + +L Sbjct: 534 FNPYFTTKSSGTGLGLAIVHRIIEAHGGEIKVESVVGQGTVFTLMLP 580 >gi|189346805|ref|YP_001943334.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chlorobium limicola DSM 245] gi|189340952|gb|ACD90355.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chlorobium limicola DSM 245] Length = 679 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 70/233 (30%), Gaps = 20/233 (8%) Query: 1 MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDE 48 + + L A+ L S + H+I +P+ AI + LD + Sbjct: 446 LTEQRAMQQVIDRQAKLQAMGELASGVAHEIRNPLNAIGILAQRLDIEFSPAVDEPEYRH 505 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQ 101 +++ + ++ + + L D + + + ++ Sbjct: 506 LVRTVVSEVHRLNAIIQRFLKFGRPPLLMPVPVHLADFVRSYGTVLQSEAEKKSIRFTLK 565 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++LLN+ + +GG +TI V + ++ + +G Sbjct: 566 ADCDRTVLIDREQMQQVLLNIIRNGVEATAKGGSITIRVFCRGSRSVIEIADSGTGIPAA 625 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + H + + + V S +L Sbjct: 626 KLPEIFNLYF-TTKNDGSGMGLSIANQIVHAHGGLIEVSSREGEGSVFSIVLP 677 >gi|108760411|ref|YP_628670.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108464291|gb|ABF89476.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 875 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 +A+ + L AL L + + H++ +P+GAI NS+ + ++ ++ Sbjct: 636 LARTQAQLVRRERLAALGELSAVVAHEVRNPLGAIFNSVASIRRIVGPDSAAVPLLDIVG 695 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 S L F R + +V + D + RV++ + Sbjct: 696 EESDRLNRIVADLLTFARPPAPHPYAVPLSPLVEDAVRGALAEAPGQVRVELDLADDVPS 755 Query: 111 LSRE---RAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ + + LNL + A ++P+ + ++ E +G P+ Sbjct: 756 VTVDERMMRQAFLNLAINAVQAMPQGGMLRASVRRATGTPEVEVQFVDSGPGI-SPDVRA 814 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + ++ R+ E L Sbjct: 815 RIFEPFFTTKAKGTGLGLAVVKRIIESHQGRVALESQPGQGTTFRLYLP 863 >gi|220918622|ref|YP_002493926.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956476|gb|ACL66860.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 548 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47 + + + L +L L + I H+I +P+ I +L L E + Sbjct: 287 LRNAQEQLVRTEKLSSLGKLSASIAHEINNPLAGILTFAKLVSRTLAEGPPDDARRAVLQ 346 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------- 100 + L+ + ++ + + + IA + Sbjct: 347 RNLGLVEREAQRCSAIVRNLLDFARERPMAKKPVDPRAAVEEALSLIANQIAIQGVKLER 406 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + + + + +N+ M A ++ +GGK+ I+ + + + + +G Sbjct: 407 HLPPLPQVLADFGQLRQAFVNVAMNACEAMGAKGGKLRITARAPEGAVEIAFQDDGPGM- 465 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE+ + I D + + V + + + + + + L Sbjct: 466 PPERVSHIFDPFFTTKEKGTGLGLSVVYGIVQRHGGSIAVDSTEGEGTTFTFRLP 520 >gi|223938005|ref|ZP_03629904.1| integral membrane sensor hybrid histidine kinase [bacterium Ellin514] gi|223893406|gb|EEF59868.1| integral membrane sensor hybrid histidine kinase [bacterium Ellin514] Length = 754 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 71/232 (30%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L + + + H++ +P+ ++ E+L + + ++ + + + Sbjct: 377 LKATQNQLIQSEKLSGIGEFVAGVAHELNNPLTSVMGFAEILQQSELPEQHRRFLDMIFK 436 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 SA L F R + L ++++ + ++ + Sbjct: 437 SAKRCQKIVAGLLSFARKHLPERKVLSVNTVLESAIEIVQYQLRTSNIEVITALDPNLPP 496 Query: 112 ----SRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ LN+ A ++ ++ I+ Q + + NG + Sbjct: 497 TLVDQHQMQQVFLNIINNARQAMEVRQTRGRICITSQVVDDRVRVIFQDNGPGI-SADNL 555 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + E+ + P+ + L Sbjct: 556 KKLFVPFFTTKEVGKGTGLGLSICYGIVTEHGGTITPQSKHGEGASFTIDLP 607 >gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 854 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 +++ L + L S + H++ +P+ +I+ EL+ ++ +D+ ++ I + Sbjct: 605 RDVTKETEMDRLKSELVSTVSHELRTPLSSIYGFTELMLNRKMDLSKQDKYLKTIHSETE 664 Query: 59 SAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L + R Sbjct: 665 RLSNLVNDFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTITFRSLTDACPL 724 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++ NL A P GG + + ++ + F+++ G Sbjct: 725 IEADEEKMKQLMNNLLNNAVKYSPFGGNIEVVLEADHHHVQFAVRDEGIGIPKSALAKLF 784 Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E ++ + L Sbjct: 785 DKFYRVDNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFTVKLP 836 >gi|46203582|ref|ZP_00051317.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 306 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 +A+ + S L ++ + + + H+I +PI I +LE+ E LI Sbjct: 68 LAETRQQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREALGPAADEVRVEFDLI 127 Query: 54 RLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + D + + + + + V + Sbjct: 128 DQQVHRVNMIVTRLLQFARPDEYAGYVETVVPADVVADCLVLVRHLLERADVTIERSDTA 187 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160 + E ++++NL + A ++P GG + + +D + G Sbjct: 188 SRTVEVSRTELQQVVINLMVNAIHAMPEGGPLRLRTRDEDRSGHAGVAVEVSDTGVGIPA 247 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + L Sbjct: 248 DRLRKIFDPFFTTRSHGGTGLGLSISYTLIARYGGTITVESEPGRGSTFTVWLP 301 >gi|197123857|ref|YP_002135808.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196173706|gb|ACG74679.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 548 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47 + + + L +L L + I H+I +P+ I +L L E + Sbjct: 287 LRNAQEQLVRTEKLSSLGKLSASIAHEINNPLAGILTFAKLVSRTLAEGPPDDARRAVLQ 346 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------- 100 + L+ + ++ + + + IA + Sbjct: 347 RNLGLVEREAQRCSAIVRNLLDFARERPMAKKPVDPRAAVEEALSLIANQIAIQGVKLER 406 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + + + + +N+ M A ++ +GGK+ + + + + + +G Sbjct: 407 HLPPLPQVLADFGQLRQAFVNVAMNACEAMGAKGGKLRVIARAPEGAVEIAFQDDGPGM- 465 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE+ I D + + V + + + + + + L Sbjct: 466 PPERVGHIFDPFFTTKEKGTGLGLSVVYGIVQRHGGSIAVDSTEGEGTTFTFRLP 520 >gi|308271006|emb|CBX27616.1| hypothetical protein N47_H24380 [uncultured Desulfobacterium sp.] Length = 575 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 78/227 (34%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + S L +L L + I H+I +P+ +I E ++E + ++ Sbjct: 347 LRREVA---RSQRLASLGSLAAGIAHEIRNPLSSIKGLATYFIEHNEKEEDKDIAKIMIQ 403 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + V I+ + + + + ++ + E+I Sbjct: 404 EVDRLNRVVSQLVELARPVSISKKPAPLKSVIEDSIKLLKREALEKNIKITIHIPPEEIQ 463 Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++LLNL++ A S+ +GG++++ V I + G+ + + + Sbjct: 464 IALDKDRITQVLLNLYLNAIESMEKGGRLSVDVSKKDKGAIIKVSDTGSGIKKEDL-ALV 522 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V + + ++ + V + L Sbjct: 523 FDPYFTTKSTGTGLGLAIVYNIIEAHGGKITVQSRPGQETVFTIFLP 569 >gi|222529475|ref|YP_002573357.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725] gi|222456322|gb|ACM60584.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725] Length = 575 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + I+D+ + +I + + + Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + ++ + ++ ++ + + ++V E Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGLEMNIYRDWL 462 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I +NL A GKV ++V+ N + +K G E +I + Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKLDNLIVIKVKDTGIGIPEKEI-ERIFERFYRVD 521 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ E + + + Sbjct: 522 KGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566 >gi|224370880|ref|YP_002605044.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223693597|gb|ACN16880.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 557 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED------- 47 + + + + + AL + + + H+I +P+G I +LL++ + Sbjct: 312 LKELNAQLIQADKMAALGKMAAGVAHEINNPLGIIAAKAGWMRDLLEDEAFRNSENFKEY 371 Query: 48 -----EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQ 101 ++ + + ++ L F R VD L + D R++ Sbjct: 372 DQALEKIEEHVERAAKVTHNMLGFARSMEPVMERVDVNQVLKKTLEFLDYHAGINDIRIE 431 Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++ ++ ++ LN+ A ++ R G +T+ + + + G Sbjct: 432 TRFDESIPEIMSDQSQLQQVFLNILNNAVDAIERQGTITVETLAKTDTLVIHITDTGRGI 491 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + E + +L Sbjct: 492 PET-LKKKIFDPFFTTKAVNKGTGLGLSITYTIVERLGGTIQVESGQGRGTCFTVVLP 548 >gi|218690382|ref|YP_002398594.1| sensory histidine kinase AtoS [Escherichia coli ED1a] gi|218427946|emb|CAR08866.2| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli ED1a] Length = 608 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILHQQTRDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + + +L Sbjct: 552 IFDPFFTTKAPGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599 >gi|149918695|ref|ZP_01907183.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149820536|gb|EDM79950.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 679 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 58/232 (25%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + + + H++ +P+ +I +LL E + D ++ ++L Sbjct: 364 QRALDRTHDADQAKGEFLAAVSHELRTPLNSIMGFAQLLLETKLNDSQVEDVKLILAGGR 423 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SWTG 106 + + + + L +++ +A + Sbjct: 424 QLHELIADILDLSMIESGELDLRVQHCALDELVAELVDIHQAQVRDRELELVADVADDLP 483 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 R ++L NL A G + + + ++ G E Sbjct: 484 TIECDRRRIGQVLTNLMSNAIKFTETGSVTVRARLEQDDYVSIAVIDTGIGIAESELPGV 543 Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + RL E L Sbjct: 544 FEEYRQAGERKRKAKGTGLGLAIARRIVQAHGGRLEAESTLGEGSTFRLTLP 595 >gi|94970016|ref|YP_592064.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552066|gb|ABF41990.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 585 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 20/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67 + + H++ +P+ +I E L E E +++IR ++ + + Sbjct: 353 ANVSHELRTPLTSIQGYAETLSEAFREDDPAREFVEIIRRNAQRMYRLTEDLLTLARVES 412 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 R+ F + L Q ++ V + GE ++ NL Sbjct: 413 GEQRMEFHAVTPGELLAEAELNFQDHHRGAGIELSVMNTAQGEVEVDRDALRQVFSNLLD 472 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI--DSH 179 A GGK+ + +D ++ +F ++ G F + + ++ Sbjct: 473 NAVKYGGTGGKILLGSRDVEDRVLFYIRDFGPGIPSEHLARLFERFYRVDKARSVQSGGT 532 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E +H V S +L + Sbjct: 533 GLGLAIAKHIVRAHGGEIRAESELNHGAVFSFILPR 568 >gi|308173414|ref|YP_003920119.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606278|emb|CBI42649.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|328553656|gb|AEB24148.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328911498|gb|AEB63094.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 434 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 69/228 (30%), Gaps = 17/228 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + N + S L L + I H++ +P+ ++ L+L+ E + Sbjct: 199 LETNERLAMQSQKLAIAGELAAGIAHEVRNPLTSVSGFLQLMKAQYPERT--DYFDIIFS 256 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQVSWTG 106 + + +++ ++K + + Sbjct: 257 EIKRIDLVLGELLLLAKPQTVNFTAHHLNHILKQVATLLDTNAVLSNTVIEKDFTQTESC 316 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ +N+ A ++P GG + I + + + S++ GN EK Sbjct: 317 IVNGDENQLKQVFINIIKNAIEAMPDGGNIHIYTKRDEENAVISIQDEGNGM-SKEKLEN 375 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E+ +L + + +L Sbjct: 376 IGKPFFSTKDQGTGLGLPICLRILKEHNGKLNIKSKNGEGSTFQVILP 423 >gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] Length = 650 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 66/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + K+ L + + + + H++ +P+ +I +EL+ + + + +++ Sbjct: 414 LEKSYNELKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTMGAITESQKKCLEIAN 473 Query: 55 LSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + D + + D ++ + Sbjct: 474 KNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTLKPLADEKNINI-IYKI 532 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL A P GKV I N + NG + Sbjct: 533 NDIIMKGDKDRITQVLTNLIENAIKFSPVNGKVEIQALKEGNSVHIKIIDNGPGIPKKDL 592 Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + E V ++ Sbjct: 593 DRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVESKLGSGSVFHIIIP 648 >gi|326940399|gb|AEA16295.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 595 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 572 >gi|228908366|ref|ZP_04072210.1| hypothetical protein bthur0013_25270 [Bacillus thuringiensis IBL 200] gi|228851274|gb|EEM96084.1| hypothetical protein bthur0013_25270 [Bacillus thuringiensis IBL 200] Length = 590 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|228939751|ref|ZP_04102331.1| hypothetical protein bthur0008_24050 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972633|ref|ZP_04133235.1| hypothetical protein bthur0003_24020 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979221|ref|ZP_04139562.1| hypothetical protein bthur0002_24050 [Bacillus thuringiensis Bt407] gi|228780497|gb|EEM28723.1| hypothetical protein bthur0002_24050 [Bacillus thuringiensis Bt407] gi|228787074|gb|EEM35051.1| hypothetical protein bthur0003_24020 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819910|gb|EEM65955.1| hypothetical protein bthur0008_24050 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 590 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|218897642|ref|YP_002446053.1| sensor histidine kinase [Bacillus cereus G9842] gi|228965569|ref|ZP_04126651.1| hypothetical protein bthur0004_23960 [Bacillus thuringiensis serovar sotto str. T04001] gi|218544112|gb|ACK96506.1| sensor histidine kinase [Bacillus cereus G9842] gi|228794162|gb|EEM41683.1| hypothetical protein bthur0004_23960 [Bacillus thuringiensis serovar sotto str. T04001] Length = 590 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|154685856|ref|YP_001421017.1| KinC [Bacillus amyloliquefaciens FZB42] gi|154351707|gb|ABS73786.1| KinC [Bacillus amyloliquefaciens FZB42] Length = 434 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 69/228 (30%), Gaps = 17/228 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + N + S L L + I H++ +P+ ++ L+L+ E + Sbjct: 199 LETNERLAMQSQKLAIAGELAAGIAHEVRNPLTSVSGFLQLMKAQYPERT--DYFDIIFS 256 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQVSWTG 106 + + ++ ++K + + + Sbjct: 257 EIKRIDLVLGELLLLAKPQTVTFTAHHLNHILRQVATLLDTNAVLSNTVIEKDFRQTESC 316 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ +N+ A ++P GG + I + + + S++ GN EK Sbjct: 317 MVNGDENQLKQVFINIIKNAIEAMPDGGNIHIYTKRDEEYAVISIQDEGNGM-SKEKLEN 375 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E+ +L + + +L Sbjct: 376 IGKPFFSTKDQGTGLGLPICLRILKEHNGKLNIKSKNGEGSTFQVILP 423 >gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 382 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 + + L AL + + H+I +P+ AI E L E + ++I Sbjct: 148 LREEQERRAQDERLSALDQMVEGVAHEIRNPVTAIGGFARRLYERLPNGTQEKQYAEVIV 207 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTG 106 S ++ + A + + ++ Sbjct: 208 NESKRLEQMVRQIVEATVISIPSLRKRDINEVIVEALAACQEKLNESQVTAKLELAEDLP 267 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 I + +++ +L A ++P GG +TI + + G Sbjct: 268 PLIMDAGNMRRVIAHLISNAVNAMPSGGTLTIISARRNHYGQIQVSDTGVGIPSK-ILPH 326 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + V + ++ ++ E + S LL Sbjct: 327 IFDPFFTTKSSGPGLGLAMVHKIIKQHGGQISVETEPNKGTTFSILLP 374 >gi|228958865|ref|ZP_04120571.1| hypothetical protein bthur0005_23630 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800802|gb|EEM47713.1| hypothetical protein bthur0005_23630 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 590 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSW-----TGEKID 110 L+ + + + A+ +QV Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVDLFTDGKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|229190728|ref|ZP_04317723.1| hypothetical protein bcere0002_23950 [Bacillus cereus ATCC 10876] gi|228592753|gb|EEK50577.1| hypothetical protein bcere0002_23950 [Bacillus cereus ATCC 10876] Length = 590 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|332092308|gb|EGI97383.1| sensor protein zraS [Shigella boydii 3594-74] Length = 455 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 348 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 445 >gi|295400792|ref|ZP_06810768.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294977055|gb|EFG52657.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 581 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 64/223 (28%), Gaps = 11/223 (4%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 ++ S L L + + H+I +P+ ++ ++LL E +I Sbjct: 353 QQSEELLRKSEKLAVVGELAAGVAHEIRNPLTSLKGFIQLLKEGKHNQMYFDIIESELER 412 Query: 60 AIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + S S + ++ + + VQ S + L + Sbjct: 413 LSEIVDGFLLLGKPNPAKKAYSHVSEMLQHVMKLLEGQALLHHVTVQYSIDEQLPPLYCD 472 Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ A ++P GG + I + + + + G E+ + + Sbjct: 473 ENQLKQVFINIIKNAIEAMPNGGILRIEAKQRLDSILICITDEGCGI-PKERMATLGEPF 531 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + + L Sbjct: 532 YSTKEKGTGLGLMVSFKIVEAHGGKMNIYSEEGKGTTVCLLFP 574 >gi|312111356|ref|YP_003989672.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311216457|gb|ADP75061.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 581 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 64/223 (28%), Gaps = 11/223 (4%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 ++ S L L + + H+I +P+ ++ ++LL E +I Sbjct: 353 QQSEELLRKSEKLAVVGELAAGVAHEIRNPLTSLKGFIQLLKEGKHNQMYFDIIESELER 412 Query: 60 AIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + S S + ++ + + VQ S + L + Sbjct: 413 LSEIVDGFLLLGKPNPAKKAYSHVSEMLQHVMKLLEGQALLHHVTVQYSIDEQLPPLYCD 472 Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ A ++P GG + I + + + + G E+ + + Sbjct: 473 ENQLKQVFINIIKNAIEAMPNGGILRIEAKQRLDSILICITDEGCGI-PKERMATLGEPF 531 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + + L Sbjct: 532 YSTKEKGTGLGLMVSFKIVEAHGGKMNIYSEEGKGTTVCLLFP 574 >gi|228952958|ref|ZP_04115020.1| hypothetical protein bthur0006_23480 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806679|gb|EEM53236.1| hypothetical protein bthur0006_23480 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 590 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|229079814|ref|ZP_04212346.1| hypothetical protein bcere0023_24660 [Bacillus cereus Rock4-2] gi|228703398|gb|EEL55852.1| hypothetical protein bcere0023_24660 [Bacillus cereus Rock4-2] Length = 590 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|218233298|ref|YP_002367368.1| hypothetical protein BCB4264_A2659 [Bacillus cereus B4264] gi|218161255|gb|ACK61247.1| hypothetical protein BCB4264_A2659 [Bacillus cereus B4264] Length = 595 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 408 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 572 >gi|157692038|ref|YP_001486500.1| sporulation sensor histidine kinase D [Bacillus pumilus SAFR-032] gi|157680796|gb|ABV61940.1| sporulation sensor histidine kinase D [Bacillus pumilus SAFR-032] Length = 501 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 69/225 (30%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + ++L+ L + H+I +P+ I ++LL + +E + Sbjct: 273 QERHQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYHSEEDQLYFSVIEEEIK 332 Query: 62 IRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKI 109 + + + + + + I + V+ ++ Sbjct: 333 RINQIVSEFLVLGKPTAEKWQNNSVKEIVSEIMPIVFSEANLYNVEVDLQINTIQDVGVY 392 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++LN+ + ++P GG + I ++ K+ I +K G + E I Sbjct: 393 CTKDHIKQVVLNVAKNSLEAMPNGGHLKILIEAEKDHVIIKVKDTGEGIQ-EEMLKHIFL 451 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + E + + +L Sbjct: 452 PFITSKEKGTGLGLVVCKRIISMYGGTIDIESEVNKGTTVMIMLP 496 >gi|194014569|ref|ZP_03053186.1| sporulation sensor histidine kinase D [Bacillus pumilus ATCC 7061] gi|194013595|gb|EDW23160.1| sporulation sensor histidine kinase D [Bacillus pumilus ATCC 7061] Length = 502 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + ++L+ L + H+I +P+ I ++LL + +E + Sbjct: 274 QERHQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYHSEEDQLYFSVIEEEIK 333 Query: 62 IRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKI 109 + + + + + + I + V+ ++ Sbjct: 334 RINQIVSEFLVLGKPTAEKWQNNSVKEIVSEIMPIVFSEANLYNVEVDLQINTIQDVGVY 393 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++LN+ + ++P GG + I ++ K I +K G + E I Sbjct: 394 CTKDHIKQVVLNVAKNSLEAMPNGGHLKILIEAEKEHVIIKVKDTGEGIQ-EEMLKHIFL 452 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + E + + +L Sbjct: 453 PFITSKEKGTGLGLVVCKRIISMYGGTIDIESEVNKGTTVMIMLP 497 >gi|24115287|ref|NP_709797.1| sensor protein ZraS [Shigella flexneri 2a str. 301] gi|30064715|ref|NP_838886.1| sensor protein ZraS [Shigella flexneri 2a str. 2457T] gi|24054582|gb|AAN45504.1| sensor kinase for HydG, hydrogenase 3 activity [Shigella flexneri 2a str. 301] gi|30042975|gb|AAP18697.1| sensor kinase for HydG, hydrogenase 3 activity [Shigella flexneri 2a str. 2457T] gi|281603387|gb|ADA76371.1| Sensor histidine kinase ZraS [Shigella flexneri 2002017] gi|313648654|gb|EFS13094.1| sensor protein zraS [Shigella flexneri 2a str. 2457T] gi|332749201|gb|EGJ79623.1| sensor protein zraS [Shigella flexneri 2747-71] gi|332751442|gb|EGJ81844.1| sensor protein zraS [Shigella flexneri 4343-70] gi|332762824|gb|EGJ93083.1| his Kinase A domain protein [Shigella flexneri 2930-71] gi|332765557|gb|EGJ95771.1| sensor protein zraS [Shigella flexneri K-671] gi|332998976|gb|EGK18566.1| sensor protein zraS [Shigella flexneri K-218] gi|333014343|gb|EGK33696.1| sensor protein zraS [Shigella flexneri K-304] Length = 458 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|323698588|ref|ZP_08110500.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323458520|gb|EGB14385.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 470 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 75/230 (32%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG---------IEDEV 49 + K + + L ++ L S I H + +P+ I S ++L+E + + Sbjct: 235 LKKRQTQLVQAQKLSSIGTLASGIAHQLNNPLNNISTSAQILEEETRGQDEFADKMMHNI 294 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGE 107 +Q + L+F R + L +++ ++ ++V Sbjct: 295 IQETLRARDIVKGLLEFSRHKDFSPAPCNLKEVLESAVRLVSGQLGPRINVDIRVPDDVT 354 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQ 166 + + LLNL + + ++ + ++ ++ NG P+ + Sbjct: 355 LYLDRQRFQEALLNLIINSIQAIGDAEGTISITTSRETDHKVLTIADNGPGM-SPDTLQR 413 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + Y V + E++ + + + L Sbjct: 414 IFDPFFSTKEVGQGTGLGLYIVYGIIEEHRGTIRVDSTPGEGTSFTIKLP 463 >gi|149181222|ref|ZP_01859721.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148851121|gb|EDL65272.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 429 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 76/225 (33%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53 +N ++S L + L + + H+I +P+ ++ ++L+ ++ + + ++ Sbjct: 203 RENEEMMIASEKLSVIGQLAAAVAHEIRNPLTSLKGFVQLMQVTKKVEDSHLSIMLSEID 262 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKI 109 R++ +S + + + + + I + + + ++ + Sbjct: 263 RINLISGEMLILGKQQDIVFAHEEVNDIIKQVLVLMEAQANLDNVEIKFNPDETGPIFVN 322 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L+NL ++ G V + ++++ + NG E+ + + Sbjct: 323 ADQNQLKQVLINLMKNGVEAIEGSGLVNVVTYKNESQAFIKINDNGVGM-DQERIDHLGE 381 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + L Sbjct: 382 PFYSTKEKGTGLGLAVCKKIIERHQGTITYHSEKGKGTTVIISLP 426 >gi|319653067|ref|ZP_08007170.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2] gi|317395239|gb|EFV75974.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2] Length = 718 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 70/226 (30%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K L A+ L + + H+I +P+ + E L +E + + + Sbjct: 490 KKTEEVLHQQDKLAAVGQLAAGVAHEIRNPLTTMKGYTEFLQLEETHEERQEYLSIILDE 549 Query: 60 AIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + I + + + + ++ + + I + Sbjct: 550 IDRVNNIVEDFMVLAKPKAAELEERDIIPIIKNVVSFLEFEARNRNVKIGFEYQQDIIQI 609 Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++LLN ++P GG +T+ N+ ++K G EK I Sbjct: 610 ECDENRLKQVLLNFIKNGIEAMPDGGNITVRAGIINNQVQIAIKDTGVGI-PQEKLKNIG 668 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + ++ E + + +L Sbjct: 669 EPFFTTKKNGNGLGLMVSFKIIESHNGKVFIESELNKGTTFNIVLP 714 >gi|148262576|ref|YP_001229282.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396076|gb|ABQ24709.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 491 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 18/222 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMS 59 + L ++ + + I H+I +P+ I +++ ++ + I +EV++ + + Sbjct: 263 RADRLASVGEMAAGIAHEIKNPLTGIASAITIIKDDFSPSDPRTEIVNEVLEQVSRLDKT 322 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSWTGEKIDLSRER 115 L F + + +D L K ++ Sbjct: 323 VNDLLFFGKPSQPEPTYIDINATLKKTLMFASRHRGSKDIEKKLELQDDLPPVYVDPKQI 382 Query: 116 AKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ LNLF+ A ++ +GG +TI Q S+ G P+ +I Sbjct: 383 QQVFLNLFLNAVQAMYQGGVLTIKSSLLQKDCTWVEVSVADTGQGI-PPQILEKIFTPFF 441 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ L D + + L Sbjct: 442 TTKAQGTGLGLAICHKLVTQHGGTLSVASEDGKGTIFTVALP 483 >gi|312622291|ref|YP_004023904.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kronotskyensis 2002] gi|312202758|gb|ADQ46085.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kronotskyensis 2002] Length = 575 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + I+D+ + +I + + + Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + ++ + ++ ++ + + ++V E Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGLEMNIYRDWL 462 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I +NL A GKV ++V+ N + +K G E +I + Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKLDNLIVIKVKDTGIGIPGREV-ERIFERFYRVD 521 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ E + + + Sbjct: 522 KGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566 >gi|229030329|ref|ZP_04186376.1| hypothetical protein bcere0028_24010 [Bacillus cereus AH1271] gi|228730984|gb|EEL81919.1| hypothetical protein bcere0028_24010 [Bacillus cereus AH1271] Length = 590 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEMNTEQKNIYQIYKNVVSLMNTKAIMTNIQVELYAESNDISIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGKITIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567 >gi|193067899|ref|ZP_03048865.1| sensor histidine kinase ZraS [Escherichia coli E110019] gi|192958874|gb|EDV89311.1| sensor histidine kinase ZraS [Escherichia coli E110019] Length = 458 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G +++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVMASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|315186284|gb|EFU20045.1| signal transduction histidine kinase, nitrogen specific, NtrB [Spirochaeta thermophila DSM 6578] Length = 388 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + L M+ L +L L + + H+I +P+GAI L+L++ + + + +S Sbjct: 141 QRAQEVRLKRMESLASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPY 200 Query: 58 -----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-----------DFIAVDKRVQ 101 + + ++ + +++E Sbjct: 201 VGVIKEEIERLNRIVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRI 260 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 R + LLNL A ++P GG +T+ Q S G Sbjct: 261 PEDIPSLSLDRRYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVGI-PE 319 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + E+ + + + + L Sbjct: 320 HLKEKIFEPYFTTKETGSGLGLTLVYKIVQEHGGEIEVQSAEGKGTTFTLLFP 372 >gi|39996421|ref|NP_952372.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39983301|gb|AAR34695.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|298505431|gb|ADI84154.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 367 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + L AL + + + H+I +P+G+I + E+L + + E ++++ + Sbjct: 139 EEQLRRAERLSALGEMSAMLAHEIRNPLGSIRGTAEILRDDFSPGDRKFEFLEILIKETD 198 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + L L +++ + ++ Sbjct: 199 RLNRVVEDFLRLARPLDGEKKRCDLAAELRELVTLQESEATARGIGLSLEAGEAPTVAGD 258 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD------SKNENIFSLKINGNLARFPEKFT 165 + LNL + A + GG+V + + ++ G ++ Sbjct: 259 RERLRQAFLNLILNALQATGEGGRVAVRLAMRGASGDMPAGVEITVSDTGRGIDPAQR-E 317 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E L Sbjct: 318 KIFTPFFTTKEGGTGLGLVITQRIVEAHGGTIGLESEPGRGTTFRVWLP 366 >gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] Length = 575 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 22/225 (9%), Positives = 71/225 (31%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + I+D+ + +I + + + Sbjct: 343 ERVRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402 Query: 67 MRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + ++ ++ ++ + + ++V E Sbjct: 403 LLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDIKVPEGLEMNIYRDWL 462 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I +NL A GKV ++++ + +K G E +I + Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTLEKPNGMVVIKVKDTGIGIPEKEI-ERIFERFYRVD 521 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + + Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTIP 566 >gi|229153745|ref|ZP_04281886.1| hypothetical protein bcere0011_52440 [Bacillus cereus m1550] gi|228629698|gb|EEK86385.1| hypothetical protein bcere0011_52440 [Bacillus cereus m1550] Length = 590 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 67/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGGISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|110807853|ref|YP_691373.1| sensor protein ZraS [Shigella flexneri 5 str. 8401] gi|110617401|gb|ABF06068.1| sensor kinase for HydG [Shigella flexneri 5 str. 8401] Length = 455 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 445 >gi|296503205|ref|YP_003664905.1| sporulation kinase [Bacillus thuringiensis BMB171] gi|296324257|gb|ADH07185.1| sporulation kinase [Bacillus thuringiensis BMB171] Length = 595 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 407 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV---SWTGEKID 110 L+ + I + + I + +V++ Sbjct: 408 RIEAILQEFLSIAKTDEINTEKKNIYRIFKNVVSLMNTKAIMKNIQVELFTDDKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 572 >gi|229148082|ref|ZP_04276417.1| hypothetical protein bcere0012_51990 [Bacillus cereus BDRD-ST24] gi|228635387|gb|EEK91882.1| hypothetical protein bcere0012_51990 [Bacillus cereus BDRD-ST24] Length = 590 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV---SWTGEKID 110 L+ + I + + I + +V++ Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYRIFKNVVSLMNTKAIMKNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|139439878|ref|ZP_01773243.1| Hypothetical protein COLAER_02278 [Collinsella aerofaciens ATCC 25986] gi|133774806|gb|EBA38626.1| Hypothetical protein COLAER_02278 [Collinsella aerofaciens ATCC 25986] Length = 481 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 71/237 (29%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA ++ ++ L S + H++ +P+ A+ ++E + + +DE ++ + + Sbjct: 236 MATSLEKDMKHEK---RLTSDVAHELRTPLMAMLATVEAMQDGVYPTDDEHLETVASETR 292 Query: 59 SAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------W 104 + + L+ + + D+ + + +R+ V Sbjct: 293 RLARLVQQMLDLSRMENSTAPLNLEPVDMVPFVRSIVNAQERLFVDRDLRLRFADETQGH 352 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++NL A P GG V +SV + ++ G + Sbjct: 353 DDVVEADPDMITQCVINLMSNAMRYTPEGGWVVVSVLSDRKHVSIAVSDTGIGIAKDDLS 412 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + E + L + Sbjct: 413 -RIFGRFWRADASRAREAGGLGVGLAVTKQIVERHHGYISVESELGKGTTFTIHLPR 468 >gi|187732012|ref|YP_001882689.1| sensor protein ZraS [Shigella boydii CDC 3083-94] gi|187429004|gb|ACD08278.1| sensor histidine kinase ZraS [Shigella boydii CDC 3083-94] Length = 458 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|320172734|gb|EFW47968.1| Sensor protein of zinc sigma-54-dependent two-component system [Shigella dysenteriae CDC 74-1112] Length = 458 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|197123814|ref|YP_002135765.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196173663|gb|ACG74636.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 581 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 +A+ + + A + R+ H+I +P+ I S+E L E I DE Sbjct: 340 LAQGRARLAQAERIAAWREVARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEG 399 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVS 103 Q I + S + ++ + Sbjct: 400 TQAIGEEVRRLKRIVDEFSRFARLPAPERSEVPAEELASAVLALFPAAPPGVEVERAVAP 459 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++LLNL A ++P GG++ + + + F + +G + Sbjct: 460 DLPAVLADRDQIMQVLLNLVRNALDAMPSGGRLRLVARRDGDAVAFEVSDSGAGIAPADL 519 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + +A E+ L + L Sbjct: 520 -ERVFEPYFTTKPGGTGLGLAIARRIAEEHGGALEAASTPGAGATFTLRLP 569 >gi|82546345|ref|YP_410292.1| sensor protein ZraS [Shigella boydii Sb227] gi|81247756|gb|ABB68464.1| sensor kinase for HydG [Shigella boydii Sb227] gi|320185956|gb|EFW60704.1| Sensor protein of zinc sigma-54-dependent two-component system [Shigella flexneri CDC 796-83] Length = 458 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|311067964|ref|YP_003972887.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310868481|gb|ADP31956.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 428 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 17/225 (7%) Query: 4 NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 N + S L L + I H++ +P+ ++ L+L+ + + Sbjct: 202 NERLAMQSQKLAIAGELAAGIAHEVRNPLTSVSGFLQLMKTQYPDRT--DYFDIIFSEIK 259 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKI 109 + I +++ ++K ++ + + Sbjct: 260 RIDLVLGELLLLAKPQTVTFKPHKINGILKQVTTLLDTNAVLSNIVIEKNFNLTESCKIN 319 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ ++P GG + IS + + I S+K G+ E QI + Sbjct: 320 GDENQLKQVFINIIKNGIEAMPAGGVINISSEKKGSYTIISIKDQGSGM-TKENMKQIGE 378 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+K L E +L Sbjct: 379 PFFSTKEKGTGLGLPICLRILKEHKGELKIESESGKGSTFYVILP 423 >gi|329929451|ref|ZP_08283185.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328936339|gb|EGG32786.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 574 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 68/222 (30%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53 + N+ + LV + + I H+I +P+ + L+L+ E + E + Sbjct: 336 RTEFINVERLSLVGQMAASITHEIRNPMAVVRGFLQLMKEKSPDTLDHYYRIVMEELDRA 395 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112 + + D + L + + + +++ + E + Sbjct: 396 NGIISDFLSLAQNRAAEKEECHLHDIIHELSPLLWADANLRGQNIELKLGTGIPELYLNA 455 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +E +++LNL ++ G +TI + + + G E ++ + Sbjct: 456 KEMKQLILNLCRNGMEAMDDKGTLTIETRLEGDLAQLYVADTGIGIPENEL-ERLFEPFF 514 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + V Sbjct: 515 TTKSKGTGLGLALCMSIIQRHHGTIDVKSHLGKGTVFIISFP 556 >gi|309783960|ref|ZP_07678605.1| sensor protein zraS [Shigella dysenteriae 1617] gi|308928331|gb|EFP73793.1| sensor protein zraS [Shigella dysenteriae 1617] Length = 455 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ + S+ +G + I + Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASEGGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 445 >gi|295706146|ref|YP_003599221.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294803805|gb|ADF40871.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 538 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 62/226 (27%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M K + M+ + L + + H+I +P+ + L+L + E + L+ Sbjct: 312 MQKELQ-RAEKMNAIGQLAASVAHEIRNPMTVVKGFLQLFQDNTKLSNTELSYIHLMINE 370 Query: 57 SMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 A + + + + + Sbjct: 371 MDRAEAIIHDYLSLAKPDVHQHRFINCLECITSLVDLLSSYALLTNNILIELDAKEEVYV 430 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++LLN+ ++ GG + + + + + ++ G E+ ++ Sbjct: 431 RGSRNELNQVLLNIMKNGIEAMRAGGTLRVGLYKREGQVHIQIEDTGIGM-TSEQVNRLG 489 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L + R+ E I + + Sbjct: 490 TAFYSLKEKGTGIGLMVSYQLVEQMNGRIEVESIPGKGSTFTLIFP 535 >gi|89897368|ref|YP_520855.1| hypothetical protein DSY4622 [Desulfitobacterium hafniense Y51] gi|89336816|dbj|BAE86411.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 484 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQ 51 M+ + + +++ L L S + H++ +P+ I E L+ E ++ Sbjct: 236 MSAELKAKIEAIERYDRLRQELLSDVSHELRTPLTVIQGFSEAVLDGLVKSKEQEQNYLK 295 Query: 52 LIRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 LI + + + + I + +Q+ E + Sbjct: 296 LIIDETERLRRLVDDLLDLKALEEVETFDEMDYVVLNKLVQISVERFKQLAETREIELEI 355 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + S ++L NL A G KV I ++ + ++K +G Sbjct: 356 ILPEAPVTIWGNSDRLKQVLTNLVDNAIKHSESGTKVGIQLEFENDWAFIAVKDSGPGIP 415 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + V + + ++L V + L Sbjct: 416 QGELENIWERFYKIDKSRSRRGTGTGLGLSIVKKIIEMHNGKVLARSRIGQGTVFTVYLP 475 >gi|229070093|ref|ZP_04203360.1| hypothetical protein bcere0025_22890 [Bacillus cereus F65185] gi|228713007|gb|EEL64915.1| hypothetical protein bcere0025_22890 [Bacillus cereus F65185] Length = 590 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIYVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|5712282|gb|AAD47419.1|AF100457_2 histidine kinase [Myxococcus xanthus] Length = 830 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 68/234 (29%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 +A + L AL L + + H++ +P+G I N++ L G ++ ++ Sbjct: 590 LAATRAEMVKRERLAALGELSAIVAHEVRNPLGVIFNAVASLRRLLVPGGDAAMLLDILG 649 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGE 107 S + + V LG + Q + R+Q Sbjct: 650 EESDRLNRIVGDLLDYTRPRDPVLQQEDLGRVLQDSLEAARMQGGGADRSIRIQSDVEPG 709 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARF 160 + +R I L VA ++ + + + + G Sbjct: 710 LPPVPMDRRLIRQALVNVAVNAIQSMPQGGLVQVRARREAHAGREQLRIDVVDQGPGI-P 768 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + V + E++ + + I + L Sbjct: 769 AELLHRVFEPFFTTKAQGTGLGLAVVRRILEEHRGEIAVDSIPGRGTTFTFRLP 822 >gi|148264434|ref|YP_001231140.1| GAF sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397934|gb|ABQ26567.1| GAF sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 552 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54 K ++S L AL + + + H++ +P+ I + ++L +D Sbjct: 311 TKMEAQLVNSAKLAALGEMAAGVAHELNNPMTVIIGTAQMLARDLQQDAQFDKAEVLEDI 370 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L F R +D + +I+ I + V + Sbjct: 371 INSGLRCKRIVQNLLTFSRQNQPPVTDIDLNAEAERMLSMIQYQINRSQIRIVEQFDVNL 430 Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQ--------DSKNENIFSLKINGNL 157 + ++L N + A +L + ++ D K + S+ NG+ Sbjct: 431 PRVTANGPQIQQVLTNFLINARDALADVERKEKIIEVATSLRVEDEKRWAVLSVSDNGSG 490 Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I S + + +A + + E +L Sbjct: 491 I-APENMSKIFTPFYTSKEATKGTGLGLSVSLGIAESHNGTIEVESRPGEGSTFCLVLP 548 >gi|153003542|ref|YP_001377867.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp. Fw109-5] gi|152027115|gb|ABS24883.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. Fw109-5] Length = 546 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 17/229 (7%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 + + + S L L + + + H++ +P+ A+ SLELL + +M ++ Sbjct: 307 RELEDAMQRSRRLADLGRVAAGLAHELRNPLAAMAGSLELLQSNASLPPDDRRLMDIVLR 366 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKI 109 + + + L + A + + Sbjct: 367 EASRLNGLVTDLLEYTRPAPLRRVPTDLSVLLDEALQVFANDPAAARVRVERDLTPVSIA 426 Query: 110 DLSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ NL + A + R G+ V ++ + ++ +G + + Sbjct: 427 CDPDQTRQVFWNLVVNAAQAAAREGRAGRVRVACRPDARGARIVVEDDGPGIPAADLP-R 485 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + V + + + E L + Sbjct: 486 IFLPFFTTKQNGTGLGLPTVQRVVDAHHGSVAVESSPGRGTRFVVQLPR 534 >gi|157163472|ref|YP_001460790.1| sensor protein ZraS [Escherichia coli HS] gi|191168656|ref|ZP_03030437.1| sensor histidine kinase ZraS [Escherichia coli B7A] gi|193066405|ref|ZP_03047452.1| sensor histidine kinase ZraS [Escherichia coli E22] gi|194429973|ref|ZP_03062482.1| sensor histidine kinase ZraS [Escherichia coli B171] gi|209921483|ref|YP_002295567.1| sensor protein ZraS [Escherichia coli SE11] gi|218556558|ref|YP_002389472.1| sensor protein ZraS [Escherichia coli IAI1] gi|260846803|ref|YP_003224581.1| sensory histidine kinase ZraS in two-component regulatory system with ZraR [Escherichia coli O103:H2 str. 12009] gi|300819815|ref|ZP_07100002.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300824616|ref|ZP_07104724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|307315023|ref|ZP_07594609.1| integral membrane sensor signal transduction histidine kinase [Escherichia coli W] gi|309797708|ref|ZP_07692094.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|312974210|ref|ZP_07788380.1| sensor protein zraS [Escherichia coli 1827-70] gi|331670858|ref|ZP_08371693.1| sensor protein ZraS [Escherichia coli TA271] gi|331680127|ref|ZP_08380788.1| sensor protein ZraS [Escherichia coli H591] gi|157069152|gb|ABV08407.1| sensor histidine kinase ZraS [Escherichia coli HS] gi|190901296|gb|EDV61064.1| sensor histidine kinase ZraS [Escherichia coli B7A] gi|192925929|gb|EDV80576.1| sensor histidine kinase ZraS [Escherichia coli E22] gi|194412002|gb|EDX28315.1| sensor histidine kinase ZraS [Escherichia coli B171] gi|209914742|dbj|BAG79816.1| two-component sensor kinase [Escherichia coli SE11] gi|218363327|emb|CAR00977.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli IAI1] gi|257761950|dbj|BAI33447.1| sensory histidine kinase ZraS in two-component regulatory system with ZraR [Escherichia coli O103:H2 str. 12009] gi|300522865|gb|EFK43934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300527636|gb|EFK48698.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|306905528|gb|EFN36061.1| integral membrane sensor signal transduction histidine kinase [Escherichia coli W] gi|308118720|gb|EFO55982.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|310331377|gb|EFP98642.1| sensor protein zraS [Escherichia coli 1827-70] gi|315063329|gb|ADT77656.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli W] gi|320200156|gb|EFW74745.1| Sensor protein of zinc sigma-54-dependent two-component system [Escherichia coli EC4100B] gi|323161304|gb|EFZ47213.1| sensor protein zraS [Escherichia coli E128010] gi|323174484|gb|EFZ60109.1| sensor protein zraS [Escherichia coli LT-68] gi|323182103|gb|EFZ67513.1| sensor protein zraS [Escherichia coli 1357] gi|323380607|gb|ADX52875.1| integral membrane sensor signal transduction histidine kinase [Escherichia coli KO11] gi|323943608|gb|EGB39716.1| hsp90-like protein [Escherichia coli H120] gi|324017343|gb|EGB86562.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] gi|324115435|gb|EGC09380.1| hsp90-like protein [Escherichia coli E1167] gi|331061946|gb|EGI33870.1| sensor protein ZraS [Escherichia coli TA271] gi|331072282|gb|EGI43616.1| sensor protein ZraS [Escherichia coli H591] Length = 458 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 579 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 + + H++ +PI +I E L + ++D+ +++ L + Sbjct: 356 FVANVSHELKTPITSIKGFTETLLDGAMKDDKALSDFLSIILKESERLQSLVQDLLDLSK 415 Query: 69 LAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120 + I + Q+ E I ++ + ++ L Sbjct: 416 MEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFL 475 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P G V ISV + + G + E +I + Sbjct: 476 NLANNALTYTPEKGTVGISVNVKETVVDIKVSDTGIGIQKEEIP-RIFERFYRVDKDRSR 534 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + V + L++ Sbjct: 535 NSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTLKR 575 >gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] Length = 579 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 + + H++ +PI +I E L + ++D+ +++ L + Sbjct: 356 FVANVSHELKTPITSIKGFTETLLDGAMKDDKALSDFLSIILKESERLQSLVQDLLDLSK 415 Query: 69 LAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120 + I + Q+ E I ++ + ++ L Sbjct: 416 MEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFL 475 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P G V ISV + + G + E +I + Sbjct: 476 NLANNALTYTPEKGTVGISVNVKETVVDIKVSDTGIGIQKEEIP-RIFERFYRVDKDRSR 534 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + V + L++ Sbjct: 535 NSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTLKR 575 >gi|238764141|ref|ZP_04625095.1| Signal transduction histidine-protein kinase atoS [Yersinia kristensenii ATCC 33638] gi|238697678|gb|EEP90441.1| Signal transduction histidine-protein kinase atoS [Yersinia kristensenii ATCC 33638] Length = 624 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 72/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 K + + + L L L + + H++ +P+ AI +++L + + + ++ + Sbjct: 389 KKEVQRRIEQAERLATLGELMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILK 448 Query: 57 -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110 + L F R G V+ L + +++ + V D Sbjct: 449 EVQSINRVIQQLLDFSRPRIGRYHQVNLNQILRESLILVKTKGVEARVDFHVQLDENLSD 508 Query: 111 LSRERAKILLNLFMVAHAS----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + + L + + RG + + N ++K NG + ++ Sbjct: 509 IEADGELLKQVLLNILINAVQSITARGEIIISTQTLDDNYQQITVKDNGCGI-ADDIKSK 567 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + + E + +L Sbjct: 568 VFDPFYTTKPSGTGLGLSISQRIIASHDGDIRLESQPNKGTTFIIILP 615 >gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 456 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 24/227 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + ++ + +I + + Sbjct: 225 EKMRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEAREKFLDIIDFEAERLTRLIND 284 Query: 67 M------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + L +E+ +D KR I Sbjct: 285 ILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLTIIANRDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL GG V +S + + I ++ NG +K ++ + Sbjct: 345 FHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVEDNGIGI-PKDKIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + K + E + + Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRFNR 450 >gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 753 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + + + H+I +P+ I +LL + + + + L S Sbjct: 369 LEQAKEVAEEASRLKSEFLANMSHEIRTPLNVILGFTDLLLDETEDAKKRDHLHLIKDSG 428 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDI----EQVIEDFIAVDKRVQVSWTGEKIDL- 111 + + +D I + D + + F KR + +T E Sbjct: 429 KNLLELINDILDFSKIEANKLDLEIDVFDPKALLQNIKGMFSLEAKRKGLDFTVEHDVPL 488 Query: 112 ------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +IL+NL A G + ++ FS+ G E Sbjct: 489 PELLGDQYRIRQILMNLLSNAMKFTEVGSVSLRAHYENTGIMRFSVSDTGIGI-PEESRK 547 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + L H + E + L Sbjct: 548 QIFHPFEQLDGSAKRKFSGTGLGLSITRRLVHLMGGNITLESKAGRGSTFTIELP 602 >gi|108763472|ref|YP_629337.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108467352|gb|ABF92537.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 830 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 68/234 (29%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 +A + L AL L + + H++ +P+G I N++ L G ++ ++ Sbjct: 590 LAATRAEMVKRERLAALGELSAIVAHEVRNPLGVIFNAVASLRRLLVPGGDAAMLLDILG 649 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGE 107 S + + V LG + Q + R+Q Sbjct: 650 EESDRLNRIVGDLLDYTRPRDPVLQQEDLGRVLQDSLEAARMQGGGADRSIRIQSDVEPG 709 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARF 160 + +R I L VA ++ + + + + G Sbjct: 710 LPPVPMDRRLIRQALVNVAVNAIQSMPQGGLVQVRARREAHAGREQLRIDVVDQGPGI-P 768 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + V + E++ + + I + L Sbjct: 769 AELLHRVFEPFFTTKAQGTGLGLAVVRRILEEHRGEIAVDSIPGRGTTFTFRLP 822 >gi|229044334|ref|ZP_04191999.1| hypothetical protein bcere0027_23620 [Bacillus cereus AH676] gi|228725001|gb|EEL76293.1| hypothetical protein bcere0027_23620 [Bacillus cereus AH676] Length = 590 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ ++ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDIMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHRGTISIMSEVGVGTTVTIYLPK 567 >gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 587 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +PI +I E L + +Q+I S ++ Sbjct: 361 EKMRSEFVANVSHELRTPITSIKGFTETLLEGAMQDEETCRNFLQIISDESERLYRMIRD 420 Query: 67 ---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKIDLSRE 114 + + I D+ + + Sbjct: 421 ILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKELTITLPSPKPDIWLMTDKDC 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 +I+LNL A A GGK++I + + G E F + + Sbjct: 481 LQQIILNLLTNAIAYTQEGGKISIKTEADSENITIQVMDTGIGIPEKELTRIFERFYRVD 540 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + E + + L Sbjct: 541 KARSRDSGGTGLGLAIVKHLVENLHGHISVESKEGRGTTFTVTLP 585 >gi|228921316|ref|ZP_04084641.1| hypothetical protein bthur0011_23200 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838330|gb|EEM83646.1| hypothetical protein bthur0011_23200 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 590 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIHLPK 567 >gi|116493524|ref|YP_805259.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus pentosaceus ATCC 25745] gi|116103674|gb|ABJ68817.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus pentosaceus ATCC 25745] Length = 615 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++ + +E L + + +++ + + + + + Sbjct: 381 FVSNVSHELRTPLTSMKSYIEALVEGAWKDPEVAPNFLKVTQEETDRMMRMINDLLNLSR 440 Query: 73 Y--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + ++ D+ D + ++ +T I + + Sbjct: 441 MDLGTARLEREYVNLNELFNHILDRFDMILKNSDKPDKNYSIKRDFTRRDIWVEVDTDKI 500 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN- 171 ++L N+ A P GG +T + ++ N I S+ G F + + Sbjct: 501 QQVLDNIMNNAIKYSPDGGIITCRLLETHNHVIMSITDQGLGIPKDSISHIFDRFYRVDK 560 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + L Sbjct: 561 ARSRAQGGTGLGLAISKEVIQLHGGRIWVESREGEGSTFYISLP 604 >gi|238789934|ref|ZP_04633714.1| Signal transduction histidine-protein kinase atoS [Yersinia frederiksenii ATCC 33641] gi|238722007|gb|EEQ13667.1| Signal transduction histidine-protein kinase atoS [Yersinia frederiksenii ATCC 33641] Length = 593 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 K + + + L L L + + H++ +P+ AI +++L + + + ++ + Sbjct: 358 KKEVQRRIEQAERLATLGELMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILK 417 Query: 57 -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110 + L F R G V+ + + +++ + V D Sbjct: 418 EVQSINRVIQQLLDFSRPRIGRYHQVNLNQIIRESLILVKTKGVEARVDFHVQLDENLSD 477 Query: 111 LSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + + L + ++ + + N +++ NG + + Sbjct: 478 IEADGELLKQVLLNILINAVQSIVARGEIIISTQALDDNYQQITIQDNGCGI-AEDIKAK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + + E + +L Sbjct: 537 VFDPFYTTKPSGTGLGLSISQRIIASHDGDIRLESQPNKGTTFIIILP 584 >gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 600 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 68/225 (30%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR--- 63 ++ + + H++ +P+ +I + E L ++ + + + +I + Sbjct: 372 ENMRKEFVANVSHELRTPLTSIKSYAETLLDGALEDRELAGKFLSVINSEADRMTRLVKD 431 Query: 64 --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 M+ D + + + + +I ++R Sbjct: 432 LLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKFESEEKNQTLECFTIGEELEIVADKDR 491 Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 +++LN+ A P GGK+T+ + +E + +G + F + + Sbjct: 492 MEQVVLNILTNAIKYTPEGGKITVYIGRMYSEVYVKVVDSGIGIPREDLGRIFERFYRTD 551 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K + ++ L Sbjct: 552 KARSREMGGTGLGLAIAKEIVEAHKGSISVASEPGKGTEVTVKLP 596 >gi|320095893|ref|ZP_08027519.1| signal transduction histidine-protein kinase/phosphatase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977173|gb|EFW08890.1| signal transduction histidine-protein kinase/phosphatase [Actinomyces sp. oral taxon 178 str. F0338] Length = 480 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSR-----ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI 53 +A + L ++ A++ R + H++ +PI + +ELLD + + L+ Sbjct: 241 LAGAVNRMLDRVE-RAVVARRELLDDVSHELRTPITVVRGHMELLDPSDHADVVDTRALV 299 Query: 54 RLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + VD + + + + Sbjct: 300 IDELDRMGALVGDLLELARASDAVDPAPVDLAALTDRVLDKARALGEREWALDGAARATC 359 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165 S + L L A G V I ++ G + Sbjct: 360 WADSARITQAWLQLAQNAVQYSQEGTAVGIGSSCDSEWARMWVRDRGAGIAPQDIDRVRR 419 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V G + + V + + RL E + ++ Sbjct: 420 RFVRGAGSERVSGSGLGLSIVESIVRAHGGRLDIESTPGEGSTFTLVVP 468 >gi|218697711|ref|YP_002405378.1| sensor protein ZraS [Escherichia coli 55989] gi|218354443|emb|CAV01258.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli 55989] Length = 458 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVGQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|83589986|ref|YP_429995.1| histidine kinase [Moorella thermoacetica ATCC 39073] gi|83572900|gb|ABC19452.1| histidine kinase [Moorella thermoacetica ATCC 39073] Length = 234 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 68/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSA 60 ++ + + ++ L + + H+I +P+ +I L+LL + + Sbjct: 7 EEDREYLTEKLAIIGELAAGMAHEIRNPLTSIRGFLQLLRSKYDPGAPEQEYFEIMLDEL 66 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLS 112 ++ + + + +Q+ ++ I + +++ + L Sbjct: 67 DRINNIIKEFLSLSKPSQPQLQIVSFDQLVTEALLLAEQEAIMNEVKLEQHLAHDLPLLC 126 Query: 113 RERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + A+I + + +L V + E + ++ G + I Sbjct: 127 LDPAQIKQVILNLTSNALHAAGPGGKVTVCCYLDKKAKEVVTTISDTGPGILPDQLKL-I 185 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + ++ + S L Sbjct: 186 FEPFYTTKENGTGLGLTLSNRIIKGHGGKIKVKSKVGEGSCFSIHLP 232 >gi|229110090|ref|ZP_04239666.1| hypothetical protein bcere0018_23450 [Bacillus cereus Rock1-15] gi|228673282|gb|EEL28550.1| hypothetical protein bcere0018_23450 [Bacillus cereus Rock1-15] Length = 590 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L ++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV---SWTGEKID 110 L+ + I + + I + +V++ Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYRIFKNVVSLMNTKAIMKNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHRGTISIMSEVGVGTTVTIYLPK 567 >gi|153007095|ref|YP_001381420.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030668|gb|ABS28436.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 506 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 10/223 (4%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + + L + L + + H+I +P+G I +LL + L + Sbjct: 280 LRDHQERLVETEKLAGIGRLAAGVAHEINNPLGVILGYAKLLRKKAEPAAAEDLAVIEEE 339 Query: 59 SAII------RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 + L R +VD D+ ++ E + V V Sbjct: 340 TLRAKEIVEGLLDLSRPLPAAAQAVDLRALADDVVARLREARLLDGVAVHVDGGATAPGH 399 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++L+NL A + GG+V + V +++ +G + ++ + Sbjct: 400 PDKLRQVLVNLVRNAAEAAGPGGRVAVRVGALDGTAEVAVEDSGPGIDAATRG-RLFEPF 458 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + L + + + L Sbjct: 459 FTTKPRGTGLGLAVSRAIARAHGGDLAADPAEHGGARFALRLP 501 >gi|260858113|ref|YP_003232004.1| sensory histidine kinase ZraS in two-component regulatory system with ZraR [Escherichia coli O26:H11 str. 11368] gi|260870714|ref|YP_003237116.1| sensory histidine kinase ZraS in two-component regulatory system with ZraR [Escherichia coli O111:H- str. 11128] gi|257756762|dbj|BAI28264.1| sensory histidine kinase ZraS in two-component regulatory system with ZraR [Escherichia coli O26:H11 str. 11368] gi|257767070|dbj|BAI38565.1| sensory histidine kinase ZraS in two-component regulatory system with ZraR [Escherichia coli O111:H- str. 11128] gi|323177559|gb|EFZ63144.1| sensor protein zraS [Escherichia coli 1180] Length = 458 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVGQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|333010737|gb|EGK30165.1| sensor protein zraS [Shigella flexneri VA-6] Length = 458 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|229178913|ref|ZP_04306272.1| hypothetical protein bcere0005_22680 [Bacillus cereus 172560W] gi|228604566|gb|EEK62028.1| hypothetical protein bcere0005_22680 [Bacillus cereus 172560W] Length = 579 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 392 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 451 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 452 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 510 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGIGTTVTIYLPK 556 >gi|206972449|ref|ZP_03233394.1| sensor histidine kinase [Bacillus cereus AH1134] gi|206732609|gb|EDZ49786.1| sensor histidine kinase [Bacillus cereus AH1134] Length = 590 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGIGTTVTIYLPK 567 >gi|308272179|emb|CBX28786.1| hypothetical protein N47_L13840 [uncultured Desulfobacterium sp.] Length = 498 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 82/231 (35%), Gaps = 19/231 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L + AL + I H+I +P+ +S + L E E + Sbjct: 261 RRKLEMELHQAQKFAALGVMAGGIAHEIRNPLAICSSSAQFLMEEDGTPEFRRECADKIH 320 Query: 59 SAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I LK+ + ++ ++I L Q++ + A +++++ + + Sbjct: 321 MGIRRTSAIIENLLKYSHPSKTTQTTLINIISLIKETQILVTYHAKILKIEINTSFPRQP 380 Query: 111 LSRER-----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + E ++ +NLF+ A ++P GG + I V+ + + G E Sbjct: 381 VVVEGVATLLQQVFMNLFLNAINAMPSGGNLGIDVKIFDSRVRVQVTDTGCGISPREIG- 439 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D ++I + + ++ + E + + L Sbjct: 440 KIFDPFYTTSIVGQGTGLGLSLCYSIVKQHSGTIDVESAEGSGSTFTVNLP 490 >gi|300907557|ref|ZP_07125195.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|301302184|ref|ZP_07208316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300400724|gb|EFJ84262.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300842347|gb|EFK70107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|315252728|gb|EFU32696.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] Length = 458 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|262195610|ref|YP_003266819.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262078957|gb|ACY14926.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 919 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 73/244 (29%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN-----------------SLELLD 41 + + + S + ++ L + I H+I +P+ AI N S E + Sbjct: 661 LTRAQDQLVQSEKMASIGQLVAGIAHEINNPVNAIVNTVGPLEEAAVTVMSSDDSAEREE 720 Query: 42 EVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 +++++++ + + R D + D ++ + + Sbjct: 721 AAEDVRDMIRVVKRGAERTKAIVRALHNYSRTDDEQLVEFDLNRSIDDSLALLRHLLKQN 780 Query: 98 KRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKI 153 V+ + + ++ +NL A +L + + + + Sbjct: 781 IAVERDYESVGRIRGHAGQLNQVFMNLLTNAAQALAGREGALIRVETRSDDEHVRIRVID 840 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG +I D + + + V L + + E V + Sbjct: 841 NGAGI-PSALLPRIFDPFFTTKEVGEGTGLGLSIVHGLVERHGGSIEVESELGEGTVFTV 899 Query: 212 LLEK 215 +L + Sbjct: 900 VLPR 903 >gi|331675490|ref|ZP_08376239.1| sensor protein ZraS [Escherichia coli TA280] gi|331067368|gb|EGI38774.1| sensor protein ZraS [Escherichia coli TA280] Length = 455 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + + L Sbjct: 407 ADGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 445 >gi|138894502|ref|YP_001124955.1| two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196247897|ref|ZP_03146599.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. G11MC16] gi|134266015|gb|ABO66210.1| Two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196212681|gb|EDY07438.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. G11MC16] Length = 738 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56 K + L +++V L + I H+I +P+ A+ ++LL G +I Sbjct: 502 RKEMELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSVGGDYSMYFNVIMSE 561 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDL 111 + + + I Q + + + ++ + + Sbjct: 562 LKRIESIITEFLVLAKPQAVQYKQNDICKIMQDTIDLISAQAMMHNVQIIADFERGLPPV 621 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ A +P+GG +T+ + + S+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGDITVRIARTGRHVRISITDQGCGI-PKDKIKKLG 680 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ ++ E L Sbjct: 681 EPFYTTKERGTGLGLMVSYKIIEEHRGKIDVESEVGVGTTFHITLP 726 >gi|82778821|ref|YP_405170.1| sensor protein ZraS [Shigella dysenteriae Sd197] gi|81242969|gb|ABB63679.1| sensor kinase for HydG hydrogenase 3 activity [Shigella dysenteriae Sd197] Length = 458 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ + S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASEGGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|138895124|ref|YP_001125577.1| sporulation kinase B [Geobacillus thermodenitrificans NG80-2] gi|196248295|ref|ZP_03146996.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134266637|gb|ABO66832.1| Sporulation kinase B [Geobacillus thermodenitrificans NG80-2] gi|196212020|gb|EDY06778.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 430 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 78/224 (34%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55 +A+ + M++V+ L + I H+I +P+ + ++LL + E + Sbjct: 193 LARAELMKMEKMEIVSQLAASISHEIRNPLTVVKGFIQLLQTEPLPRETKERYIRIALEE 252 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + I ++ A + + ++ +V++ + V + Sbjct: 253 VERAEGIIHDYLTFAKPAPKETEPIDVAVELRKVLQMIAPMAHMHSVDLSSSLEHGIVIG 312 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + ++V++ + + ++ NG E+ + + Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLRVTVENQETSVVITVSDNGIGM-TKEQVRRFGEP 371 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E L+ L Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWKVESTVQKGTTLTITLP 415 >gi|293417505|ref|ZP_06660128.1| sensor protein ZRas [Escherichia coli B185] gi|291430832|gb|EFF03829.1| sensor protein ZRas [Escherichia coli B185] Length = 458 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|284924095|emb|CBG37194.1| two-component system sensor kinase [Escherichia coli 042] Length = 455 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 347 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 445 >gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK [Pediococcus acidilactici 7_4] gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284] gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK [Pediococcus acidilactici 7_4] gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284] Length = 615 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++ + +E L + + +++ + + + + + Sbjct: 381 FVSNVSHELRTPLTSMKSYIEALVDGAWKDPNVAPNFLKVTQEETDRMMRMINDLLNLSR 440 Query: 73 Y--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + ++ D+ + + ++ +T I + + Sbjct: 441 MDLGTARLDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIWVEVDTDKI 500 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN- 171 ++L N+ A P GG +T + ++ N I S+ G F + + Sbjct: 501 QQVLDNIMNNAIKYSPDGGVITCRLVETHNHVIMSITDQGLGIPKEAISHVFDRFYRVDK 560 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + L Sbjct: 561 ARSRAQGGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLP 604 >gi|147678592|ref|YP_001212807.1| sensory histidine kinase AtoS [Pelotomaculum thermopropionicum SI] gi|146274689|dbj|BAF60438.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 607 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 18/229 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLI 53 M + + L AL L + + H+I +PI +I ++ + + + Sbjct: 378 MREKMQ---RQERLAALGKLVAGVAHEIRNPITSISGYIQFWQKKNTPSPRSIATIYREV 434 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----I 109 + L F++ + VD + + + Q D D V+ T Sbjct: 435 TRLNSIVDKLLHFVKPSQINPAPVDVNLLVDKVSQFFADTHQSDSITVVTKTENNLPPAW 494 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPEKFTQ 166 + ++L+N+ A +L I + NG E + Sbjct: 495 VDFAQVEQVLMNIMYNAWQALEGRSGTITLNTSYNPDTENLILEVADNGCGI-PAENMSN 553 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + + + + + E + + L++ Sbjct: 554 LFDPFFTTRPKGTGLGLAIAYEIIRAHGGNIEVESEEGAGTSVRIYLQR 602 >gi|170683574|ref|YP_001746388.1| sensor protein ZraS [Escherichia coli SMS-3-5] gi|170521292|gb|ACB19470.1| sensor histidine kinase ZraS [Escherichia coli SMS-3-5] Length = 458 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGTGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|312793663|ref|YP_004026586.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180803|gb|ADQ40973.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 575 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + I+D+ + +I + + + Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVATKFLNIIEVEVERLVRLIND 402 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + ++ ++ ++ + + V+V E Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKNIQLDVKVQEGLEMNIYRDWL 462 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I +NL A GKV ++V+ S + +K G E +I + Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKSDSTVTIKVKDTGIGIPEKEI-ERIFERFYRVD 521 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ E + + + Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566 >gi|256021676|ref|ZP_05435541.1| sensor protein ZraS [Shigella sp. D9] gi|332282919|ref|ZP_08395332.1| sensor protein ZraS [Shigella sp. D9] gi|332105271|gb|EGJ08617.1| sensor protein ZraS [Shigella sp. D9] Length = 458 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM 14863] gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 444 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M ++I + + + + H++ +P+ +I E L DE ++++ Sbjct: 203 MLRDITRSRQLEQMRTEFVANVTHELRTPLTSIQGFAETLLEGALDEPETARHFVEIMLR 262 Query: 56 SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S + + + +V + + + + ++ Sbjct: 263 ESRHLGALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPD 322 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++ + +++ L A P GG++T+S + + ++ G + Sbjct: 323 GLPLINGDPDRLVQVLSNLVENAIKYTPAGGRITLSARRDGDGVRIAVADTGAGIPQADL 382 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + E + +L Sbjct: 383 GRIFERFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVILP 438 >gi|120601067|ref|YP_965467.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio vulgaris DP4] gi|120561296|gb|ABM27040.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio vulgaris DP4] Length = 679 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 67/220 (30%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59 L A+ L + + H+I +P+ +I E D+ ++Q + + Sbjct: 420 RREKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGTRFPEGSDDREAARVMVQEVDRLNRV 479 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRER 115 + R + + +++ K + Sbjct: 480 ISDLIGLSRPSDIRPRPTRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDRF 539 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVES 174 A+ LLN+ + ++ GG++ ++ + S++ G PE +++ D + Sbjct: 540 AQALLNVCLNGMEAMGDGGELMVTAYRHGDGRVAVSVRDTGPGI-SPENLSRVFDPYFTT 598 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + H + +L Sbjct: 599 KGQGTGLGLAIVHKIIEAHGGEVGFRSEPGHGTECTFILP 638 >gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 587 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|89098743|ref|ZP_01171624.1| KinA [Bacillus sp. NRRL B-14911] gi|89086419|gb|EAR65539.1| KinA [Bacillus sp. NRRL B-14911] Length = 488 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLI 53 K ++ L V L + I H+I +P+ AI +LL E E ++ I Sbjct: 266 KKTEEKLHNAEKLSVVGQLAAGIAHEIRNPLTAIKGFTQLLTERKTEKYADVILSELERI 325 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ K + T V+ + + + + V+ S + + Sbjct: 326 EEIVNDLLVLAKPVVTEAQETNLVNIVKSVVTLLNTQALIYNIMIDVKYSLSEISVRCEI 385 Query: 114 ERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ ++L+N+ + ++P GGK++I V+ + + S+K G E+ ++ + Sbjct: 386 DKIKQVLINVIKNSIEAMPHGGKISIEVRQDNSFAMISVKDEGIGI-PEERLPKLGEPFY 444 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ ++ L+ Sbjct: 445 STKEKGTGLGLMICNRIIKSHGGNIYITSKENEGTIVKLLIP 486 >gi|294500028|ref|YP_003563728.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294349965|gb|ADE70294.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 460 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 60/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK++ ++ S + H+I SP+ +I + L + DE Sbjct: 229 MAKSLEQL---EEMRQEFVSNVSHEIQSPLASIQGFSKTLRSAHLSDEQRNEYLSIIEEE 285 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D D W+ + +L+ E Sbjct: 286 SRRMSSLSKQLLTLASLDKESQNIDKIPFDVAAQIKQVLFMTEWSWREKELAIEMDLPST 345 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL + GG +++ VQ + G Sbjct: 346 MISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRVQMEDTHCHVEFQDTGIGMSKESLPHI 405 Query: 167 IVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T S + V + + + E L K Sbjct: 406 FNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKGKGSTFHVYLPK 459 >gi|332998848|gb|EGK18443.1| sensor protein zraS [Shigella flexneri K-272] gi|333014308|gb|EGK33662.1| sensor protein zraS [Shigella flexneri K-227] Length = 458 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|291288223|ref|YP_003505039.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885383|gb|ADD69083.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 375 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 15/225 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49 M K + L+ + + I HDI +P+G+I LL+ ++E Sbjct: 154 MEKQRD---EKLKLMGEMAANIAHDIRNPLGSIELFASLLERDLQKNEPGMKLTRSIVKG 210 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ I + +I K ++L D + + Q + + ++ Sbjct: 211 VRTINSIINNILIFTKEIQLVKSEHYVADIVDDVILYMQHLMREKKIKFINRIDEEHMLR 270 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++++NL A + G++ + + + F + G E+ ++ Sbjct: 271 CDMELFKQVVMNLVHNAIDASSEKGEIVMDSFSEGDVSGFIVSDKGTGI-TKERRKKLFI 329 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + E L Sbjct: 330 PFQTTKAKGTGLGLAIVYKIVKAHEGNITVESDGSSYTRFRVELP 374 >gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] Length = 571 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L + + + +V V I +I +NL Sbjct: 410 QQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPGRLKQIFINLI 469 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566 >gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] Length = 571 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L + + + +V V I +I +NL Sbjct: 410 QQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPGRLKQIFINLI 469 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566 >gi|312875839|ref|ZP_07735829.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] gi|311797320|gb|EFR13659.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] Length = 575 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + I+D+ + +I + + + Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVATKFLNIIEVEVERLVRLIND 402 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + ++ ++ ++ + + V+V E Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKDIQLDVKVQEGLEMNIYRDWL 462 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I +NL A GKV ++V+ S + +K G E +I + Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKSDSTVTIKVKDTGIGIPEKEI-ERIFERFYRVD 521 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ E + + + Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566 >gi|307718253|ref|YP_003873785.1| sensory transduction histidine kinase [Spirochaeta thermophila DSM 6192] gi|306531978|gb|ADN01512.1| putative sensory transduction histidine kinase [Spirochaeta thermophila DSM 6192] Length = 388 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + L M+ L +L L + + H+I +P+GAI L+L++ + + + +S Sbjct: 141 QRAQEVRLKRMESLASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPY 200 Query: 58 -----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-----------DFIAVDKRVQ 101 + + ++ + +++E Sbjct: 201 VGVIKEEIERLNRIVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRI 260 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 R + LLNL A ++P GG +T+ Q S G Sbjct: 261 PEDIPSLSLDRRYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVGI-PE 319 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + E+ + + + + L Sbjct: 320 HLKEKIFEPYFTTKDTGSGLGLTLVYKIVQEHGGEIEVQSKEGKGTTFTLLFP 372 >gi|220918579|ref|YP_002493883.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956433|gb|ACL66817.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 581 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 +A+ + + A + R+ H+I +P+ I S+E L E I DE Sbjct: 340 LAQGRARLAQAERIAAWREVARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEG 399 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------RVQVS 103 Q I + S + ++ + R Sbjct: 400 TQAIGEEVRRLKRIVDEFSRFARLPAPERSEVPAEELASAVLALFPAAPAGVEVERAIAP 459 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++LLNL A ++P GG++ + + + F + +G + Sbjct: 460 DLPAVLADRDQVMQVLLNLVRNALDAMPSGGRLRLVARSDGDAVAFEVSDSGAGIAPADL 519 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + +A E+ L + L Sbjct: 520 -ERVFEPYFTTKPGGTGLGLAIARRIAEEHGGSLEAASPPGAGATFTLRLP 569 >gi|224370164|ref|YP_002604328.1| predicted two-component sensor histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223692881|gb|ACN16164.1| predicted two-component sensor histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 495 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 65/231 (28%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + K L + + +L L + + H + +P+G I +L+ E + I+ Sbjct: 253 LEKTQTQLLQAEKMSSLGKLAAGVAHQLNNPLGGITLFAQLMLEEHELSDDAKSDLSRIQ 312 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 + +K + T + I + I + + ++ Sbjct: 313 RDAERCSAIVKELLEFARQTNREVRPHDINTIVSRTLFLLKNQSIFQNIDIVETYDKTLP 372 Query: 110 DLSRERAK---ILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKF 164 + + + + +N+ + ++ G++ I + + G Sbjct: 373 QIPADGQQLNHVFMNIILNGADAMAGKGRLEIRTGFSADQTMVKIEISDTGPGIDKNLLS 432 Query: 165 TQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + + + R+ E + LL Sbjct: 433 TIFEPFFTTKEVGKGTGLGLSMAYGIIESHGGRIWAENREPTGTRFIILLP 483 >gi|46581783|ref|YP_012591.1| sensor protein ZraS [Desulfovibrio vulgaris str. Hildenborough] gi|46451206|gb|AAS97851.1| sensor protein ZraS [Desulfovibrio vulgaris str. Hildenborough] gi|311232340|gb|ADP85194.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio vulgaris RCH1] Length = 679 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 67/220 (30%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59 L A+ L + + H+I +P+ +I E D+ ++Q + + Sbjct: 420 RREKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGTRFPEGSDDREAARVMVQEVDRLNRV 479 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRER 115 + R + + +++ K + Sbjct: 480 ISDLIGLSRPSDIRPRPTRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDRF 539 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVES 174 A+ LLN+ + ++ GG++ ++ + S++ G PE +++ D + Sbjct: 540 AQALLNVCLNGMEAMGDGGELMVTAYRHGDGRVAVSVRDTGPGI-SPENLSRVFDPYFTT 598 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + H + +L Sbjct: 599 KGQGTGLGLAIVHKIIEAHGGEVGFRSEPGHGTECTFILP 638 >gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] Length = 571 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 410 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPSRLKQIFINLI 469 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566 >gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 587 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + +V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582 >gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] Length = 545 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + +V I +I +NL Sbjct: 384 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540 >gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] Length = 545 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + +V I +I +NL Sbjct: 384 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540 >gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] Length = 545 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + +V I +I +NL Sbjct: 384 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540 >gi|222055650|ref|YP_002538012.1| histidine kinase [Geobacter sp. FRC-32] gi|221564939|gb|ACM20911.1| histidine kinase [Geobacter sp. FRC-32] Length = 376 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 67/225 (29%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + L L + + + H+I +P+G+I + E+L + + E + + + Sbjct: 143 EEQLRRAEKLSTLGEMAAVLAHEIRNPLGSIRGTAEILKDDYKPGDPKQEFIDIQIKETE 202 Query: 59 SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + + + S Sbjct: 203 RLNRVVEDFLHMARPQPADMQLCPIQEELETIVALLSNDARGRQISLVLKPASAPVIISA 262 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169 + + LN+ + + + P GG VTI+ + + +G E +I + Sbjct: 263 DGEKLRQAFLNIIINSLQATPPGGSVTITTTPYEAGSCEICFRDSGPGI-DAETMDRIFE 321 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + E H +++ +L Sbjct: 322 PFFTTKPDGTGLGLAITKKIIESHGGTMQVESEVGHGTIVNVILP 366 >gi|108763685|ref|YP_632372.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108467565|gb|ABF92750.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 429 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---- 50 +A+ + ++ L AL + + + H++ +P+ ++ +LL E D V+ Sbjct: 202 LAQREALS-EELERGRRLAALGTMSAVLAHELRNPLASLKGHAQLLAERVERDAVLAPKA 260 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEK 108 + ++ + + D+ + V A + + Sbjct: 261 DRVVSEAVRLEQLMNDLLGFVASGELRRVEADPNDVLRAAVESTGAARVEARYLPDRTPW 320 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + L N+ A + P G +V +V+ + +F++K +G E+ +I Sbjct: 321 PLDAGRLQQALENVLRNAVQASPEGQRVEATVERQDSSLVFTVKDHGPGIAAGEE-ERIF 379 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + Sbjct: 380 EPFITGRMRGVGLGLAITRRIVELHGGTVSARSHAGGGAEFRLTVP 425 >gi|297531061|ref|YP_003672336.1| GAF sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297254313|gb|ADI27759.1| GAF sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 546 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 23/234 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 + S L A+ + + I H++ +P+ AI + +LL + I + + Sbjct: 311 EAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRSFSKDDRIYKLLFDIYSCGK 370 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KID 110 I + + + +EQV+ + +S Sbjct: 371 RCKTIIQNLLTFSRQDEYRFEDCSINDAVEQVLGLIGDQICKQNISIQKRLDASIELIEG 430 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGNLARFPE 162 ++ ++++LNL + A +L + ++ + S++ NG Sbjct: 431 NLQQISQVILNLLINAKDALEEMDIPEKIIVIETKSIVEAGEHWVVLSVRDNGKGIEEQH 490 Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A + + L K Sbjct: 491 LQEIFNPFFTTKRPGKGTGLGLSVSLGIAEAHGGTIEVVSELGKGSEFILKLPK 544 >gi|218780792|ref|YP_002432110.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762176|gb|ACL04642.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 494 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 19/232 (8%), Positives = 65/232 (28%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + + AL L + + H+I +P+ I E+ L + + + ++ I Sbjct: 256 LRSAQERLIQADRNAALGRLSASVAHEINNPLSGILMFSEIMQRSLKDDPVYRDDLKEII 315 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109 ++ ++ + + + + + + + V+ + + Sbjct: 316 DQTLRCKAIVRNLLGFSRKSDNGNEPFDIPEAFRQCLDIVLPQAKFQGIEVKCDFQPDMP 375 Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +R ++ + + + + NG E Sbjct: 376 KMQADRVQMQQVFTNLVLNAADALEGKGLICIKARHDFESGYFFMEFRDNGPGVAQGEL- 434 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + H + + E + + + L Sbjct: 435 EKIFESFYTTKPVGYGTGLGLSITQDIIHNHGGTIGVENHPEGGTIFTIRLP 486 >gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar chinensis CT-43] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 558 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553 >gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] Length = 545 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 384 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 540 >gi|218780111|ref|YP_002431429.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761495|gb|ACL03961.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 396 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 17/221 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63 L A+ L + + H+I +P+ I S L+ E E E + LI ++ Sbjct: 159 DQEKLAAIGRLAAGVAHEINNPLTTILTSAMLIQEDIPADNPEHEELALIAKEALRCRNI 218 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + S + DI V + D R+ G +I ++A+I Sbjct: 219 VSNLLDFARQSEPCKSDQDVNDIVAEAAALVRKPANFKDIRLTCDLHGREIQAHCDKAQI 278 Query: 119 LLNLFM---VAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 L L A + GG +T + N ++ G +I + Sbjct: 279 LQCLVNLALNAIDATEPGGTITFETKLLPEGNWMEITVADTGPGLPEN-IVDKIFEPFFT 337 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + E D + L Sbjct: 338 TKPTGTGLGLSITHGFVRQHRGFISVENRADIGAAFTIRLP 378 >gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] Length = 558 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553 >gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L] gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|310825294|ref|YP_003957652.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398366|gb|ADO75825.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 873 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 +A+ + L AL L + + H++ +P+GAI NS+ + + ++ ++ Sbjct: 631 LARAQQQLVQRERLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVG 690 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111 + + + + L + + + D + Sbjct: 691 EEADRLNRIVDDLLNFARPPSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPP 750 Query: 112 ----SRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKF 164 R + LNL + + ++ +GG + V ++E G+ + Sbjct: 751 VLADERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVR 809 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + + E LL Sbjct: 810 ARIFEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 859 >gi|253700258|ref|YP_003021447.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M21] gi|251775108|gb|ACT17689.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M21] Length = 538 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 79/231 (34%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 M + + L A+ L +R+ H+I +P+ AI S++L+ ++++ +L + Sbjct: 308 MKRLAAELKRADRLAAVGELSARMAHEIRNPLAAISGSVQLVALRPCVDEKDKRLFSIIL 367 Query: 58 MSAIIRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +R Y + L + V +V Sbjct: 368 RETDRLDGLLRDFLFYAKPTQPTKIPLKLRQVIADLCSLLSTDPRLDGVTIENRVPDDLV 427 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL + + ++ G + I +K E S++ +G+ E Sbjct: 428 VVFDKDQCSQVFWNLVVNSAEAIAGEGTIVIEASAVRSGAKGEARISVRDSGSGMSQGEV 487 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + R++ + + ++ L Sbjct: 488 K-RVFEPFFTTKKGGTGLGLATVYRIVETHGGRMVVDSAEGAGTTVTLYLP 537 >gi|115373530|ref|ZP_01460827.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115369536|gb|EAU68474.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 812 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 +A+ + L AL L + + H++ +P+GAI NS+ + + ++ ++ Sbjct: 570 LARAQQQLVQRERLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVG 629 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111 + + + + L + + + D + Sbjct: 630 EEADRLNRIVDDLLNFARPPSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPP 689 Query: 112 ----SRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKF 164 R + LNL + + ++ +GG + V ++E G+ + Sbjct: 690 VLADERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVR 748 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + + E LL Sbjct: 749 ARIFEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 798 >gi|74314497|ref|YP_312916.1| sensor protein ZraS [Shigella sonnei Ss046] gi|73857974|gb|AAZ90681.1| sensor kinase for HydG, hydrogenase 3 activity [Shigella sonnei Ss046] gi|323167474|gb|EFZ53182.1| sensor protein zraS [Shigella sonnei 53G] Length = 458 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 571 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 410 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 469 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566 >gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] Length = 567 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 346 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 405 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 406 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 465 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 466 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 524 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 525 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 562 >gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 567 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 346 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 405 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 406 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 465 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 466 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 524 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 525 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 562 >gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CNEVA-9066] gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055] gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western North America USA6153] gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger B] gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum] gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Australia 94] gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI] gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis str. CI] Length = 587 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|320179533|gb|EFW54484.1| Sensor protein of zinc sigma-54-dependent two-component system [Shigella boydii ATCC 9905] Length = 458 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448 >gi|320109410|ref|YP_004185000.1| integral membrane sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319927931|gb|ADV85006.1| integral membrane sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 481 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMS 59 AK+ S L LL I H++ +P+ +I + L ++ E + ++L+ + Sbjct: 248 AKSEAAK-ESERLRTLLLDSITHELRTPLTSIKGAATTLLSNDNISEADRLELLTIVDEE 306 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----------- 108 + + + A + + + +E+ I + Sbjct: 307 SDRLNRLVSQAVEMAQLEANEVHMTFAPMSMEEAIGRAREACAHVEQMHPLQVSLPPLPP 366 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + K+L NL A G + +S +E + S+ G E+ Sbjct: 367 VMADIEVVIKVLCNLLENAAKYSAEGSPIFVSAVHEGDEVLTSVADRGIGIPSDEQPLIF 426 Query: 168 VDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + ++ H V + L Sbjct: 427 DRLYRARSQGGTIPGTGMGLAISRAIVEAHGGKITVTSQPGHGSVFTFSLP 477 >gi|218707622|ref|YP_002415141.1| sensor protein ZraS [Escherichia coli UMN026] gi|293407620|ref|ZP_06651538.1| sensor protein ZRas [Escherichia coli FVEC1412] gi|298383368|ref|ZP_06992960.1| sensor protein ZRas [Escherichia coli FVEC1302] gi|300897582|ref|ZP_07115991.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|331665660|ref|ZP_08366556.1| sensor protein ZraS [Escherichia coli TA143] gi|218434719|emb|CAR15651.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli UMN026] gi|291425388|gb|EFE98428.1| sensor protein ZRas [Escherichia coli FVEC1412] gi|298276247|gb|EFI17768.1| sensor protein ZRas [Escherichia coli FVEC1302] gi|300358658|gb|EFJ74528.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|331057178|gb|EGI29170.1| sensor protein ZraS [Escherichia coli TA143] Length = 458 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 931 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 20/230 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ + + L + + H+I +P+ AI +LL + +E + I++ + Sbjct: 698 LARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVDTENIEERREYIQIVKENN 755 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + G VD + DI + ++ + + + + Sbjct: 756 DLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKENVELMFDPHLAEC 815 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +R +++ N A G Q E F ++ G E Sbjct: 816 RIISDRNRLHQVISNFVNNAIKFTSEGSIRVGYKQK-GEELEFYVQDTGVGI-DAESQAH 873 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V S + + + + ++ E L Sbjct: 874 IFERFVKLNSFVHGTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923 >gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 931 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 20/230 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ + + L + + H+I +P+ AI +LL + +E + I++ + Sbjct: 698 LARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVDTENIEERREYIQIVKENN 755 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + G VD + DI + ++ + + + + Sbjct: 756 DLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKENVELMFDPHLAEC 815 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +R +++ N A G Q E F ++ G E Sbjct: 816 RIISDRNRLHQVISNFVNNAIKFTSEGSIRVGYKQK-GEELEFYVQDTGVGI-DAESQAH 873 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V S + + + + ++ E L Sbjct: 874 IFERFVKLNSFVHGTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923 >gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] Length = 571 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L + + + +V V I +I +NL Sbjct: 410 QQGFKLNMETVDMKGILEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPGRLKQIFINLI 469 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566 >gi|218780372|ref|YP_002431690.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761756|gb|ACL04222.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 507 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 56/228 (24%), Gaps = 19/228 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-- 60 + L ++ L S I H+I +P+G I +LL + Sbjct: 271 EARMAQADKLASIGELSSGIAHEINNPLGIILGYTQLLLRNEDPENERHADLRIIEKHVK 330 Query: 61 ------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSR 113 L F R D + ++ Q + + ++ + Sbjct: 331 SCKVIVEDLLSFARGGETMKEPTDLHEVIDEVLQFLHHEPGRQDLAISKEYSLDLPLAHV 390 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIV 168 ++ KI + + + + + +K NG + +I Sbjct: 391 DKKKIRQVIMNLVINASHAVEGRGKILLATDFNPERGLASIWVKDNGPGI-PKQNMARIF 449 Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E L Sbjct: 450 DPFFTTKPTGQGTGLGLSVSYGIIKSHGGDISVESAPGEGAAFHITLP 497 >gi|39995392|ref|NP_951343.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982155|gb|AAR33616.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|298504393|gb|ADI83116.1| sensor histidine kinase, GAF and GAF domain-containing, nonconserved putative heme-binding site [Geobacter sulfurreducens KN400] Length = 600 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 61/232 (26%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSS 57 + L L A+ + + I H+I +P+ ++ L E E + Sbjct: 367 LQDAKERLLQEEKLAAIGRMAASIAHEIKNPLVSVGGFAGRLKRKFTPESEEWLYADVIG 426 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKI 109 K + ++ I Q+IE + V + Sbjct: 427 REVQHLEKMLSDILFFSRKTTICYTRCGINQIIEDGLATMAVPLEQREIVVDKRFASRLP 486 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPE 162 L + ++ + +L + ++ + G+ P+ Sbjct: 487 TLLGDCQQLRHVFTNLISNALDVMEPQGVLTIETGLARIDGKRAVSVKVGDTGSGI-APD 545 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + V + + R+ E + + + +L Sbjct: 546 VRHSIFTPFFTTKEKGTGLGLAIVHRIITNHGGRIEVENRPEGGALFTVVLP 597 >gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 921 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 20/230 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ + + L + + H+I +P+ AI +LL + +E + I++ + Sbjct: 688 LARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVDTENIEERREYIQIVKENN 745 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + G VD + DI + ++ + + + + Sbjct: 746 DLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKENVELMFDPHLAEC 805 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +R +++ N A G Q E F ++ G E Sbjct: 806 RIISDRNRLHQVISNFVNNAIKFTSEGSIRVGYKQK-GEELEFYVQDTGVGI-DAESQAH 863 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V S + + + + ++ E L Sbjct: 864 IFERFVKLNSFVHGTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 913 >gi|237704694|ref|ZP_04535175.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA] gi|226901060|gb|EEH87319.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA] Length = 612 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG+ + Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDFRVASLPGYGATFTLILP 603 >gi|150392007|ref|YP_001322056.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951869|gb|ABR50397.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 530 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 68/225 (30%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 +++ +++ AL + + I H+I +P+ + L+L + LI L Sbjct: 303 KESVIQAINTEKYAALGQIATGIAHEIKNPLTVVKGYLQLQRYKIGKPIDEDLIDLMCEE 362 Query: 60 AII----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + + D + T + Sbjct: 363 MDRASSIVEEFLVLGRRGDPQMTPCEMTNLVEEVLSVLKHEADKKGISVNRSYQNTSKIQ 422 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L+N+ ++ + GK+ + V E + ++ G I Sbjct: 423 ADIQRIKQVLMNIIKNGIEAMEQNGKLMVEVFLKGEEVVTVIQDTGEGIPHKFSKY-IGT 481 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + R+ + + + L Sbjct: 482 PYMTTKENGTGLGLSVSYEIIRVHGGRIDFQSEEGVGTTFTIYLP 526 >gi|228951815|ref|ZP_04113913.1| hypothetical protein bthur0006_12290 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807738|gb|EEM54259.1| hypothetical protein bthur0006_12290 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 508 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504 >gi|206968567|ref|ZP_03229523.1| sensor histidine kinase KinD [Bacillus cereus AH1134] gi|206737487|gb|EDZ54634.1| sensor histidine kinase KinD [Bacillus cereus AH1134] Length = 498 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494 >gi|324009495|gb|EGB78714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] Length = 458 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|86159761|ref|YP_466546.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776272|gb|ABC83109.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 581 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 69/231 (29%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 +A+ + + A + R+ H+I +P+ I S+E L E I DE Sbjct: 340 LAQGRVRLAQAERIAAWREVARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEG 399 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVS 103 Q I + + + ++ + Sbjct: 400 TQAIGEEVRRLKRIVDEFSRFARLPAPERAEVPAEELAAAVLALFPAAPPGVEVERAIAP 459 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++LLNL A ++P GG++ ++ ++ F + +G + Sbjct: 460 DLPAVLADRDQVMQVLLNLVRNALDAMPSGGRLRLAAYRDRDAVAFEVSDSGPGIAPGDL 519 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + +A E+ L + L Sbjct: 520 -ERVFEPYFTTKPGGTGLGLAIARRIAEEHGGALDAASSPGAGATFTLRLP 569 >gi|218692284|ref|YP_002400496.1| sensor protein ZraS [Escherichia coli ED1a] gi|306812018|ref|ZP_07446226.1| sensor protein ZraS [Escherichia coli NC101] gi|331660564|ref|ZP_08361497.1| sensor protein ZraS [Escherichia coli TA206] gi|218429848|emb|CAR10816.2| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli ED1a] gi|222035714|emb|CAP78459.1| Sensor protein zraS (EC 27133) [Escherichia coli LF82] gi|305854623|gb|EFM55059.1| sensor protein ZraS [Escherichia coli NC101] gi|312948577|gb|ADR29404.1| sensor protein ZraS [Escherichia coli O83:H1 str. NRG 857C] gi|331052347|gb|EGI24385.1| sensor protein ZraS [Escherichia coli TA206] Length = 458 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|154685764|ref|YP_001420925.1| KinE [Bacillus amyloliquefaciens FZB42] gi|154351615|gb|ABS73694.1| KinE [Bacillus amyloliquefaciens FZB42] Length = 739 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 73/227 (32%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 AK + L D +V L + I H+I +P+ A+ ++LL E + Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEYSLYFNVITSE 561 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111 I +F+ LA + ++ + V+ ++ ++ TG + Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621 Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E ++ + ++ ++ + S++ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQSSDQDHILISIQDEGTGI-SEDKLKRL 680 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ R+ E + V L Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727 >gi|323190139|gb|EFZ75417.1| sensor protein zraS [Escherichia coli RN587/1] Length = 458 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|78222272|ref|YP_384019.1| GAF sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78193527|gb|ABB31294.1| GAF sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 552 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54 K + + L AL + + + H++ SP+ I + +LL +D Sbjct: 311 TKMEAQLVQTAKLAALGEMAAGVAHELNSPMTVIIGTAQLLLRELQQDAQYDRAEVLEDI 370 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 L F R +D + + + +I+ I ++ V + Sbjct: 371 VNSGLRCKRIIQNLLTFSRQNQPPVTDIDLNVEVERVLSMIQYQINRNQIKIVEQLAPFL 430 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--------QDSKNENIFSLKINGNL 157 + ++L NL + A +L + + +D K + S++ NG Sbjct: 431 PRLTANGSQIQQVLTNLLINARDALGEVDRKEKVITVATALLVRDRKKWAVLSVRDNGTG 490 Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I S + + +A + + E S LL Sbjct: 491 I-APENLSKIFTPFYTSKEATKGTGLGLSVSLGIAESHNGTIEVESRLGEGSTFSLLLP 548 >gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 565 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 68/228 (29%), Gaps = 24/228 (10%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 L ++ + + H++ +PI I E L + + + + +I Sbjct: 335 QQAKLDSMRKQFVANVSHELRTPITTIKTYSETLLDVDNEETKKQFLSVIIKECDRMTRL 394 Query: 64 LKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + + ++ + + Sbjct: 395 VSDLLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKNQTLSCSILQDIVAMVDR 454 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++L+NL A + GG++ + +Q +++ +K NG + +I + Sbjct: 455 DKIEQVLINLISNAVTYVQEGGQINVVLQKEEDKIKIIVKDNGPGIPEEDLP-RIFERFY 513 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++L E + +L Sbjct: 514 RVDKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTTFTVVLP 561 >gi|194434754|ref|ZP_03067005.1| sensor histidine kinase ZraS [Shigella dysenteriae 1012] gi|194416978|gb|EDX33096.1| sensor histidine kinase ZraS [Shigella dysenteriae 1012] gi|332085390|gb|EGI90560.1| sensor protein zraS [Shigella dysenteriae 155-74] Length = 458 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448 >gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] Length = 558 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553 >gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 545 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 384 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540 >gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] Length = 558 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553 >gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] Length = 558 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553 >gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 558 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553 >gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 545 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 384 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540 >gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] Length = 558 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553 >gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] Length = 558 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553 >gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] Length = 587 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582 >gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] Length = 587 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582 >gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] Length = 587 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582 >gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] Length = 587 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582 >gi|219848904|ref|YP_002463337.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543163|gb|ACL24901.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 801 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 68/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 + + S L AL L + + H++ +P+ ++ +LL ++ I Sbjct: 416 RRLEQQLIQSDKLSALGQLVAGVAHELNNPLTSVSGYAQLLLRKRALDEDTRSDLEQIHQ 475 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 + A ++ + + S++ + D+ Q + + VQ+ + Sbjct: 476 QADRAGRIVRNLLMFAREHKPERSVVQINDVVQRALALQVYQLRVDNITVQLELDPQLPK 535 Query: 111 LSRERAKILLNLFM---VAHASLPRG------GKVTISVQDSKNENIFSLKINGNLARFP 161 + ++ L A ++ + + + G Sbjct: 536 TVADPHQLQQVLLNLITNARQAMTERGGGTLTIRTALCDTTDGPHIEIVVADTGIGIPAQ 595 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + E++ ++ E + + L Sbjct: 596 YL-DKIFNPFFTTKPVGQGTGLGLAICYGIIKEHQGQIWAESREGVGTRIFIRLP 649 >gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] Length = 587 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|110644338|ref|YP_672068.1| sensor protein ZraS [Escherichia coli 536] gi|191174288|ref|ZP_03035796.1| sensor histidine kinase ZraS [Escherichia coli F11] gi|215489335|ref|YP_002331766.1| sensor protein ZraS [Escherichia coli O127:H6 str. E2348/69] gi|300985438|ref|ZP_07177441.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|312965343|ref|ZP_07779576.1| sensor protein zraS [Escherichia coli 2362-75] gi|110345930|gb|ABG72167.1| sensor protein ZraS [Escherichia coli 536] gi|190905420|gb|EDV65051.1| sensor histidine kinase ZraS [Escherichia coli F11] gi|215267407|emb|CAS11858.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli O127:H6 str. E2348/69] gi|300306530|gb|EFJ61050.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|312290017|gb|EFR17904.1| sensor protein zraS [Escherichia coli 2362-75] gi|320197101|gb|EFW71719.1| Sensor protein of zinc sigma-54-dependent two-component system [Escherichia coli WV_060327] gi|324015257|gb|EGB84476.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 458 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 679 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 +++ + + L S + H++ +P+ +I+ EL+ + +Q I S Sbjct: 438 RDVTAETEVDRMKSELVSTVSHELRTPLSSIYGFTELMLKRKLDPERNKRYLQTIHDESK 497 Query: 59 SAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + +D++ Q + + V + Sbjct: 498 RLTDLVSDFLNVQRMESGKHSYDKEVFDLIDTVREQTRFYQASTEQHRLQLDVDENHEFL 557 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL A P GG V IS+ N+ S++ G Sbjct: 558 IHADKNSMKQLLGNLLHNAIKYSPDGGDVVISLTHHHNQIELSVRDFGLGIPSSAMPHLF 617 Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E I V LL Sbjct: 618 SKFYRVDNSDSRKIGGTGLGLSICKEIVRAHDGNIDVESILGEGTVFKVLLP 669 >gi|153006422|ref|YP_001380747.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029995|gb|ABS27763.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 516 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 76/229 (33%), Gaps = 17/229 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L + + A+ L + H+I +P+G I +L+ ++ ++L Sbjct: 283 EREVTQRLFQAEKMSAIGQLAGGVAHEINNPLGGILAFAQLMSREERTPADLESLKLIQD 342 Query: 59 SAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +A+ R G VD D ++ + + V Sbjct: 343 AAMRAKRIVESLLRFSRRPRNEEKGPVDVAQVAEDALFLLRPQMKDGRIEVVRDYRAATA 402 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + + +I +NL + A ++ G++T++V + S+ G PE +I Sbjct: 403 LGNANQLQQIFVNLVVNAIQAMAGAGRLTVAVGPAAAGRVRASVADTGPGV-RPEIAKRI 461 Query: 168 VDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +A ++ + E + L Sbjct: 462 FEPFFTTKPEGKGTGLGLSICYQIAEDHGGSIRVEPGPEGGACFVVDLP 510 >gi|53803483|ref|YP_114634.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath] gi|53757244|gb|AAU91535.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath] Length = 910 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 A+ + S L L S I HD+ +P+ I S L + + + Sbjct: 663 ARINQVRMESERLRNSLLSSISHDLRTPLATIVGSASTLVEGDYALEPEDRRELCRAIYD 722 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEK 108 S A + + +A+ G V + +E+++ + + V V + Sbjct: 723 ESRRMASLVNNILDMAWFDAGVVKLHLQWHVLEEIVGTVLTRLKKQLERRPVTVRLPRDA 782 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + + ++L NL A P + I+ + + ++ +G + Sbjct: 783 PFVYVDSVMLEQVLANLMENAIRYTPENSPIEIAAEATPFTMTITVSDHGPGIPKGQEEL 842 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + E + + + + V + +L Sbjct: 843 IFEKFYRVHREGPQSGVGLGLAICRAIVEAHGGYIRARNRAGGGAVFTIVLP 894 >gi|302390527|ref|YP_003826348.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302201155|gb|ADL08725.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 463 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 MA+ I S +L L + I H++ +PI I +LE + E ++ L S Sbjct: 233 MAEKIR---KSEELRRNLTADIAHELRTPIAIIQGTLESIQEGVLEPTPALMLSLQEEVS 289 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK---- 108 + L+ G ++ + A K ++ + Sbjct: 290 RMTRLIKDLSDLSLVEAGKLELNRIKIFPAELAGKFIHFKAEAEAKGIRFDINFPRNLPA 349 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 +I+ NL A G + + F ++ G+ + + F Sbjct: 350 VYADPTRLVQIITNLLSNALKHTSSGRIELSAEKAEGGVV-FKVQDTGSGIKKEDLPYIF 408 Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + R+ E + V S + Sbjct: 409 ERFYRAEKSRSRKTGGTGLGLAITKGLVEAHGGRIWVESREGEGSVFSFFIP 460 >gi|298527667|ref|ZP_07015071.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511319|gb|EFI35221.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 853 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 K + + LVA+ L + + H+I +P+G I +ELL + Sbjct: 621 QKQMEQKIQQTEKLVAMGQLAAGVAHEINNPLGVILCYVELLKRQFSEVPQGQEDLVTIE 680 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + R L+F R + L ++ V E F +++ + Sbjct: 681 KQARNCKRIVSDLLEFARSGETSKHTASLNQTLEEVLGMVGEQFKKQGVQIETDLDPDLP 740 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163 + + ++ +NL M A ++ + NG Sbjct: 741 QMEMDTNKIKQVFMNLLMNARQAMDGRDGKMHISTRYMAQDSLARVIFWDNGEGIPEY-M 799 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + E+ ++ E L Sbjct: 800 QDKIFDPFFSTKRTGEGTGLGLSVSYGIIREHGGEIIVESRPGEWTRFVIELP 852 >gi|218702638|ref|YP_002410267.1| sensor protein ZraS [Escherichia coli IAI39] gi|218372624|emb|CAR20499.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli IAI39] Length = 458 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|116513325|ref|YP_812231.1| Signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092640|gb|ABJ57793.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 620 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + D S + H++ +P+ ++ +E L + I + + + + + Sbjct: 366 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 425 Query: 59 SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I +++ + ++ + + +Q + + Sbjct: 426 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 485 Query: 101 QVSWTGEKIDLSRERAKILL---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + +++ N+ A P GG +T+ + ++N+ + S+ G Sbjct: 486 KRDLGNQALWVEIDTDQMMRAIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 545 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + H Sbjct: 546 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 605 Query: 213 LE 214 L Sbjct: 606 LP 607 >gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] Length = 558 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 397 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553 >gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] Length = 575 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 68/225 (30%), Gaps = 21/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I E L + + D+ + +I+ + + ++ Sbjct: 350 EKMRKDFVANVSHELKTPLTSIRGFSETLLDGAKEVPELRDQFLDIIQKEATRMQMLVED 409 Query: 67 M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + ++ + + + ++ + T Sbjct: 410 LLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTVVLQADLNRM 469 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 ++++NL A P G +V I+V+ + +K NG E F + + Sbjct: 470 KQVIMNLVANAINYSPEGSRVEIAVEAKADSYKLRVKDNGIGIAEKEVSRIFERFYRVDK 529 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + E + + + Sbjct: 530 ARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFPR 574 >gi|78224119|ref|YP_385866.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] gi|78195374|gb|ABB33141.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] Length = 541 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 55/229 (24%), Gaps = 16/229 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 K + S L +L L + I H+I +P+ I LL + LI Sbjct: 288 KKIQSQLVHSEKLASLGELVAGIAHEINNPLTGILVFASLLASDSKLDPSLKGDLDLIVK 347 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 + +K + + L I V D V + + + Sbjct: 348 ETQRCARIVKGLLDFSRESMPQKKPSSLNAIMDATLTLVCNQSSFHDINVIKEYNPDIPE 407 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFT 165 ++ + +I + + G + + ++ NG Sbjct: 408 MNLDPNQIEQVFINLLLNACHAIGGPGEIRIRTGFDQEREEAYAAITDNGCGIPEEHLSK 467 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 468 IFDPFFSTKENKGTGLGLSVSYGIIEGHGGRIEVRSTMGAGTTFTCWLP 516 >gi|293413439|ref|ZP_06656099.1| sensor protein zRas [Escherichia coli B354] gi|291468034|gb|EFF10533.1| sensor protein zRas [Escherichia coli B354] Length = 469 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 242 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 301 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 302 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 361 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 362 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 420 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 421 AEGTGLGLAVVHNIVEQHGGTIQVASQEGRGATFTLWLP 459 >gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 818 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 67/238 (28%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + K + + + + + + H++ +P+ AI E+L + + E ++ Sbjct: 290 LQKAVSALKRANRMKSEFLANMSHELRTPLNAIIGFAEVLKDKLCGELNAEQEDFVKDIH 349 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QV 102 S L+ + + + L ++ D I + Sbjct: 350 SSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIEDVYTILKGLAKKKQLQLKTVIQ 409 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +IL NL + P+ G +T + + S+ +G PE Sbjct: 410 EDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTITTNAAIVDGKMQVSVSDSGIGI-KPE 468 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + ++ + + Sbjct: 469 DREKVFKEFWQADSSFSRKYEGTGLGLALTRRIVEMHGGKIWLKSEYGKGSTFYFTIP 526 >gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 69/226 (30%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I LE L + +ED +Q++ + + Sbjct: 216 EKMRSEFIANVSHELRTPLTSIKGFLETLLDGALEDKTIAKHFLQIMNSETERLTRLIDD 275 Query: 67 M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + A + + + + + + + + + + + Sbjct: 276 LLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEEKELSFIISLPENLPLVLADGDM 335 Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L+NL A P GGK+ ++ + +K G E +I + Sbjct: 336 ISQVLINLIDNAIKYTPAGGKIEVTAAVKGSWVEVVVKDTGIGI-PEESQKRIFERFYRV 394 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ + + Sbjct: 395 DKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEGSAFGFTIP 440 >gi|322420041|ref|YP_004199264.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320126428|gb|ADW13988.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 832 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 +N+ + +D L +L L + I H++ +P+ I L+ L + + + + Sbjct: 603 RENLHEEMMRLDRLASLGKLSAGIAHEVRNPLTGISLLLDDLHDQASSNSADKELIKKAI 662 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I L + D + D ++ + G Sbjct: 663 SEIERVEKLVNALLSYSSPVRAEFRECDLNRLVNDTVLLMRRPCEKQQVQLTMDEGAVPP 722 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + +LN+ A +LP+GG++ +S + + S+ +G + I Sbjct: 723 FRLDPEKIKQAVLNIIKNAQQALPKGGRINVSTGVREGCAVISISDDGPGIAAEDLPL-I 781 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + E + L Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIIEEHQGMIRVESAQGLGTRFTVELP 828 >gi|86159802|ref|YP_466587.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776313|gb|ABC83150.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 548 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 71/235 (30%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47 + + + L +L L + I H+I +P+ I +L L E + Sbjct: 287 LRNAQEQLVRTEKLSSLGKLSASIAHEINNPLAGILTFAKLVSRTLAEGPPDDARRAVLQ 346 Query: 48 EVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + L+ + L F R VD + + +I + IA+ Sbjct: 347 RNLGLVEREAQRCSAIVRNLLDFARERPMAKKPVDPGAAVEEALSLIANQIAIQGVKLQR 406 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLAR 159 + + ++ VA + G ++ +S + + + +G Sbjct: 407 DLPPLPQVLADFGQLRQAFVNVAMNACEAMGAKGGRLRVSARAPEGAVEIAFADDGPGM- 465 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE+ + I D + + V + + + + + + L Sbjct: 466 PPERVSHIFDPFFTTKEKGTGLGLSVVYGIVQRHGGSIAVDSTEGQGTTFTLRLP 520 >gi|311067879|ref|YP_003972802.1| histidine kinase phosphorylating Spo0A [Bacillus atrophaeus 1942] gi|310868396|gb|ADP31871.1| histidine kinase phosphorylating Spo0A [Bacillus atrophaeus 1942] Length = 499 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 + ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 274 ERAENEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKSEEDQLYFSIIEQEIKR 333 Query: 60 AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKID 110 K + D + I + V+ + Sbjct: 334 INQIVSEFLVLGKPTAEKWELNSLQDIFNEIMPIIYSEGNLYNVEVELTFLTDKPLYVKC 393 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++LN+ + S+ GGK++IS+ + + I + NG E I Sbjct: 394 TKDHMKQVILNVAKNSLESMQDGGKLSISLGAADQKAIIKVIDNGEGI-SKEMLEHIFLP 452 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + + ++ L Sbjct: 453 FVTSKEKGTGLGLVVCKRIVLMYGGTITIDSELRKGTEVTITLP 496 >gi|331649857|ref|ZP_08350935.1| sensor protein ZraS [Escherichia coli M605] gi|330908319|gb|EGH36838.1| sensor protein of zinc sigma-54-dependent two-component system [Escherichia coli AA86] gi|331041323|gb|EGI13475.1| sensor protein ZraS [Escherichia coli M605] Length = 458 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ + +V+ + Q++ + E Sbjct: 291 VSELLELVKPTYLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G + ++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVINVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|148264074|ref|YP_001230780.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397574|gb|ABQ26207.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 422 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 14/226 (6%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L L + + + H+I +P+ I +++++ E+ + + Sbjct: 186 EERHQMEMAHRESLARLGEMGAMLAHEIRNPLAGIKGYAQVIEKRPAEERNRKFAQSIVN 245 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEK 108 + + Y + + + L D +I + V ++ Sbjct: 246 EVLRLENLVNELLAYVRNESTSMNLIDSGGLISHAVSLIRQEAEQLHVAVSIECPENLPV 305 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + S ++LLNLF A ++P GG + IS + + ++ +G E +I Sbjct: 306 LGNSDRLVQVLLNLFKNALQAMPDGGSLRISAGIAGSAVSITVADSGAGI-SQEDMARIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+ + +S L Sbjct: 365 EPFFTTKARGTGLGLALCKKIIGEHNGTISVSSRVGQGTSVSITLP 410 >gi|210622340|ref|ZP_03293109.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275] gi|210154328|gb|EEA85334.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275] Length = 427 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 65/233 (27%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++I + + ++ + + H++ +P+ +I E L + + + +I + Sbjct: 192 EDISERVRAENMRKDFVANVSHELKTPLTSISGFAETLKLNENIDKETRNRFLTIIDGEA 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIG----------LGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + + D+ + + + + Sbjct: 252 NRLRRLIEDILTLSFIENDKKEEKEAINLYSVYRRVEDMLMISAKTKNIALACEADESIS 311 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +I+LNL A P G V + + K + + G E ++I Sbjct: 312 LQANADYVKQIILNLVDNAIKYTPENGAVNVKIFTEKENAVIKVSDTGMGI-PKEDQSRI 370 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + E + + + Sbjct: 371 FERFYRVDKARSREIGGTGLGLAITKHIVMNLGGTISVESELEKGSTFTVKIP 423 >gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 579 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 72/238 (30%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M + + + + H++ +PI +I E L ++ E + +I Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S ++ + + + + + + ++ Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLKHKADEKGISLHLNVPK 456 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +S + ++ LNL A P GG V I+V+ + + + +G + E Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEI 516 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + V L ++ ++ V + L++ Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTLKR 573 >gi|315300746|gb|EFU59971.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 16-3] Length = 458 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|91212790|ref|YP_542776.1| sensor protein ZraS [Escherichia coli UTI89] gi|117626265|ref|YP_859588.1| sensor protein ZraS [Escherichia coli APEC O1] gi|218561069|ref|YP_002393982.1| sensor protein ZraS [Escherichia coli S88] gi|237702770|ref|ZP_04533251.1| sensor protein ZraS [Escherichia sp. 3_2_53FAA] gi|91074364|gb|ABE09245.1| sensor protein ZraS [Escherichia coli UTI89] gi|115515389|gb|ABJ03464.1| ZraS, sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli APEC O1] gi|218367838|emb|CAR05633.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli S88] gi|226903083|gb|EEH89342.1| sensor protein ZraS [Escherichia sp. 3_2_53FAA] gi|294490815|gb|ADE89571.1| sensor histidine kinase ZraS [Escherichia coli IHE3034] gi|307628380|gb|ADN72684.1| sensor protein ZraS [Escherichia coli UM146] gi|315288329|gb|EFU47728.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 110-3] gi|323948826|gb|EGB44723.1| hsp90-like protein [Escherichia coli H252] Length = 458 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|229177841|ref|ZP_04305214.1| hypothetical protein bcere0005_12050 [Bacillus cereus 172560W] gi|228605632|gb|EEK63080.1| hypothetical protein bcere0005_12050 [Bacillus cereus 172560W] Length = 486 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|218896366|ref|YP_002444777.1| sensor histidine kinase KinD [Bacillus cereus G9842] gi|218542017|gb|ACK94411.1| sensor histidine kinase KinD [Bacillus cereus G9842] Length = 498 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494 >gi|75759336|ref|ZP_00739433.1| Sporulation kinase D [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493168|gb|EAO56287.1| Sporulation kinase D [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 508 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504 >gi|170021994|ref|YP_001726948.1| sensor protein ZraS [Escherichia coli ATCC 8739] gi|188496229|ref|ZP_03003499.1| sensor histidine kinase ZraS [Escherichia coli 53638] gi|194439784|ref|ZP_03071851.1| sensor histidine kinase ZraS [Escherichia coli 101-1] gi|300919422|ref|ZP_07135926.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300928823|ref|ZP_07144331.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|169756922|gb|ACA79621.1| integral membrane sensor signal transduction histidine kinase [Escherichia coli ATCC 8739] gi|188491428|gb|EDU66531.1| sensor histidine kinase ZraS [Escherichia coli 53638] gi|194421281|gb|EDX37301.1| sensor histidine kinase ZraS [Escherichia coli 101-1] gi|300413515|gb|EFJ96825.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300463204|gb|EFK26697.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|309704419|emb|CBJ03768.1| Two-component system sensor protein [Escherichia coli ETEC H10407] gi|323958930|gb|EGB54605.1| hsp90-like protein [Escherichia coli H489] gi|323969077|gb|EGB64385.1| hsp90-like protein [Escherichia coli TA007] gi|332345994|gb|AEE59328.1| Sensor histidine kinase ZraS [Escherichia coli UMNK88] Length = 458 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAAGQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448 >gi|331655704|ref|ZP_08356694.1| sensor protein ZraS [Escherichia coli M718] gi|331046629|gb|EGI18716.1| sensor protein ZraS [Escherichia coli M718] Length = 458 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGTGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + ++ + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGATFTLWLP 448 >gi|162457083|ref|YP_001619450.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161167665|emb|CAN98970.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 526 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 + + ++ L A+ L + + H++ +P+GAI N+ L + ++ Sbjct: 282 LREAQASSVRVERLAAIGQLAASVGHELRNPLGAIRNATHYLKKRLAGTEVGAEPRVAQL 341 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSW 104 + L+ +S + + + L + V + + + Sbjct: 342 LGLMEKELLSCNRIIGDLLDFARERRLRRTACPLAPLVDDAMSVVEPPAHVRLENLVPAA 401 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162 + ++L+NL A ++P + + V + + NG E Sbjct: 402 LPVPSLDKDQFRQVLVNLIQNAAEAIPVEREGWVRVVGRVCDEAVSLEVADNGEGI-EEE 460 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + + + E + L + Sbjct: 461 HLAKIFEPLFSTKLKGTGLGLAITAGIVRLHGGTIAVESAPGAGTTFTIRLPR 513 >gi|104773346|ref|YP_618326.1| two-component system, sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422427|emb|CAI96976.1| Two-component system, sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 631 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + D S + H++ +P+ ++ +E L + I + + + + + Sbjct: 377 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 436 Query: 59 SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I +++ + ++ + + +Q + + Sbjct: 437 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 496 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + +++ N+ A P GG +T+ + ++N+ + S+ G Sbjct: 497 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 556 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + H Sbjct: 557 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 616 Query: 213 LE 214 L Sbjct: 617 LP 618 >gi|323953785|gb|EGB49592.1| hsp90-like protein [Escherichia coli H263] Length = 458 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 589 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 68/229 (29%), Gaps = 23/229 (10%) Query: 8 NLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAI 61 L ++L + + H++ +P+ +I LE L + + +++I ++ Sbjct: 354 ELRKLELLRRDFVANVSHELRTPLTSIQGFLEALMDGTIGESQARERYLKVIHQETLRLN 413 Query: 62 IRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKI 109 + + +D +G + ++ I + + Sbjct: 414 RLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIERHQITVVPEMPEGLPLML 473 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++L NL A P G VT+ + + + G + + + Sbjct: 474 GNEDRIEQVLTNLLENAVRYSPPGSTVTVRAAGREGKITVEVADRGPGIPPEDLPHIWER 533 Query: 167 IVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + ++ + V + + ++ + V S L Sbjct: 534 FHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQSEAGQGSVFSFTL 582 >gi|323702938|ref|ZP_08114595.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] gi|323532069|gb|EGB21951.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] Length = 623 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 62/226 (27%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57 M L +L L + + H+I +P+ +I ++ + + I Sbjct: 387 MRLEEQVRRQ-ERLASLGKLVAGVAHEIKNPLTSISGYIQYWQRSKAPTAKSLNTIYREV 445 Query: 58 MS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 L F + V + ++ + A + + D+ Sbjct: 446 RRLDSIVNKLLFFAKPTNQVLTRVSLNQFVEEVLNFFTETQADGIKFTLKLQENLPDVYI 505 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-----IFSLKINGNLARFPEKFTQIV 168 + +I L + ++ + + ++ ++ G + ++ Sbjct: 506 DPGQIEQVLINIIFNAIQAMPGGGEIMVSTGHQAAENLFYIEVRDTGCGV-PEQLLDKLF 564 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + H + R+ + + + L Sbjct: 565 DPFFTTKAKGTGLGLTIAHEIMHAHGGRIEVKSREGAGTTVQILFP 610 >gi|319651062|ref|ZP_08005196.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317397232|gb|EFV77936.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 607 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 65/234 (27%), Gaps = 25/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + ++ + + + H++ +P+ + + LE L + I + + + Sbjct: 368 TEQEKIDMERRE----FVANVSHELRTPLTTMRSYLEALAEGAWRDEEIAPNFLDVTQNE 423 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 + I + + L + I + + Sbjct: 424 TERMIRLVNDLLQLSKMDSKDYRLTKDWTDFIFFYNRIIDRFEMTKQQNVTFERKLPDHS 483 Query: 116 ----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162 ++L N+ A P GGKVT S+++ + S+ G + Sbjct: 484 AFVEIDEDKLTQVLDNIISNALKYSPEGGKVTFSIEEKDEFIVVSVSDQGVGIPKENIDQ 543 Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + ++ + +S L Sbjct: 544 IFERFYRVDKARTRKLGGTGLGLAIAKEMVEAHGGKIWAASTEGKGTTISFSLP 597 >gi|311067865|ref|YP_003972788.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310868382|gb|ADP31857.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 739 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49 K + L D +V L + I H+I +P+ A+ ++LL D Sbjct: 502 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSVEGDYALYFNVITSE 561 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ I +I K + + D + D+ + V + + T I Sbjct: 562 LKRIESIITEFLILAKPQAIMYEEKNVTDIMQDTMDLLHAQANLSNVQMHLDLIETIPPI 621 Query: 110 DLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A +P+GG V + +Q S + + SL+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGNVYVKIQPSGTDHILISLQDEGIGI-TEDKLKRL 680 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ ++ E + V L Sbjct: 681 GEPFYTTKERGTGLGLMVSYKIIEEHQGKITVESEEGRGTVFHLTLP 727 >gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 558 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 397 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLKQIFINLM 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553 >gi|325685238|gb|EGD27356.1| sensor histidine kinase VicK [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 631 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + D S + H++ +P+ ++ +E L + I + + + + + Sbjct: 377 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 436 Query: 59 SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I +++ + ++ + + +Q + + Sbjct: 437 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 496 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + +++ N+ A P GG +T+ + ++N+ + S+ G Sbjct: 497 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 556 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + H Sbjct: 557 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 616 Query: 213 LE 214 L Sbjct: 617 LP 618 >gi|226314891|ref|YP_002774787.1| sporulation kinase [Brevibacillus brevis NBRC 100599] gi|226097841|dbj|BAH46283.1| sporulation kinase [Brevibacillus brevis NBRC 100599] Length = 478 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 12/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 ++ S L L L + I H+I +P+ A+ ++L++ + + +Q++R Sbjct: 245 RQSEELLRYSDKLSVLGELAAGIAHEIRNPLTALKGFIQLMEGDEFANQQYLQIMRSEID 304 Query: 59 SAIIRLKFMRLAFGYTGSV-----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---D 110 + + + I+ + + + + + Sbjct: 305 RITSITSELLIMAKPQTLRFAPNGLLPLLSSVIKLLEPQALLKNVSILTDFPQVTSLILC 364 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +N+ ++P GG +TI V + ++ I + G E ++ + Sbjct: 365 EEYQIKQVFINIIKNGMEAMPLGGNLTIKVVERPSDVIIRISDQGQGI-PAELLPRLGEL 423 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ + +S + K Sbjct: 424 FYSTKETGTGLGLMVSTKIIRDHGGTINIASDVGKGTTVSISIPK 468 >gi|332637970|ref|ZP_08416833.1| histidine protein kinase; sensor protein [Weissella cibaria KACC 11862] Length = 629 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 71/233 (30%), Gaps = 28/233 (12%) Query: 10 SSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAII 62 ++L S + H++ +P+ ++ + ++ L E I+D + ++ + Sbjct: 379 QRIELERRQFVSNVSHELRTPLTSVKSYVDALQEGAIDDPEVARNFLAVAQDETTRMIHM 438 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------- 114 + L+ +G++ ++ ++ + + + + + + Sbjct: 439 INDLLELSRMDSGTMKLETEYVNVGELFNYILNRFDMIIANDDKPEKYYTIKREIPKVQI 498 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ N+ A P GG VT + D++ E + S+ G + Sbjct: 499 WVELDTSKFTQVIDNIMNNAIKYSPDGGVVTARMIDNQKEVVLSITDQGLGIPKKDLGHI 558 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ E + S L Sbjct: 559 FDRFFRVDKARSRAQGGTGLGLAISKEIIERFGGRIWVESAEGQGSTFSISLP 611 >gi|325124951|gb|ADY84281.1| Putative histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 635 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + D S + H++ +P+ ++ +E L + I + + + + + Sbjct: 381 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 440 Query: 59 SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I +++ + ++ + + +Q + + Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 500 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + +++ N+ A P GG +T+ + ++N+ + S+ G Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + H Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620 Query: 213 LE 214 L Sbjct: 621 LP 622 >gi|300811608|ref|ZP_07092088.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497403|gb|EFK32445.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 635 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + D S + H++ +P+ ++ +E L + I + + + + + Sbjct: 381 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 440 Query: 59 SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I +++ + ++ + + +Q + + Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 500 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + +++ N+ A P GG +T+ + ++N+ + S+ G Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + H Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620 Query: 213 LE 214 L Sbjct: 621 LP 622 >gi|218887238|ref|YP_002436559.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758192|gb|ACL09091.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 729 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 23/227 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59 L A+ L + + H++ +P+ +I E ++ ++Q + + Sbjct: 443 RREKLAAIGSLAAGVAHELRNPLSSIKGYATYFGSRFDEGSEDREAARVMVQEVERLNRV 502 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKID-------- 110 + R + VD+ + + ++ +D V+V G + Sbjct: 503 ISDLIGLARPSDIAPRPVDAGFLVHHVLRLVRQDAAHRGVTVRVEPDGAQDGAVGSLPRA 562 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ LLN+F+ A ++P GG++++ N +++ G PE I Sbjct: 563 LLDPDRFSQALLNVFLNALEAMPSGGELSVRLAAAPGNRIAVAVRDTGTGI-APEHLATI 621 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V + + + ++ LL Sbjct: 622 FDPYFTTKSQGTGLGLAIVHKIVEAHGGEVSLRSALGQGTEITFLLP 668 >gi|258404339|ref|YP_003197081.1| PAS/PAC sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796566|gb|ACV67503.1| PAS/PAC sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 408 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE----------------VGIEDEVM 50 + + +L + + H++ +P+ I + +L + ++ Sbjct: 163 QAEKMATIGMLAAGVAHEVNNPLAGIQGFAQGILRRLPRVQEAVDEELANDFQEYTETIL 222 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 Q L F R S+ + D +V++ I + + + E Sbjct: 223 QECNRCQEIVRTLLTFSRPRESAFCSLSMNNLIRDTLKVLQHRIKRHQGLLLQEDLEPEL 282 Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++LNL A ++ G +TI ++++ ++ G E Sbjct: 283 PLVCGDEPHLKQVILNLLTNALDAIGEEGVITIRTSSTESQVALCVEDTGEGI-PEEHLD 341 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + I + H + + + + +L K Sbjct: 342 KLFEPFFTTKPVGRGTGIGLSTCYTIVHNHGGEISVKSAPEKGSRFCVVLPK 393 >gi|253775367|ref|YP_003038198.1| sensor protein ZraS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163945|ref|YP_003047053.1| sensor protein ZraS [Escherichia coli B str. REL606] gi|297519349|ref|ZP_06937735.1| sensor protein ZraS [Escherichia coli OP50] gi|253326411|gb|ACT31013.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975846|gb|ACT41517.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli B str. REL606] gi|253980002|gb|ACT45672.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli BL21(DE3)] gi|313848811|emb|CAQ34350.2| ZraS [Escherichia coli BL21(DE3)] Length = 458 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ +R +VD + Q++ + Sbjct: 291 VSELLELVRPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAAGQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448 >gi|229189516|ref|ZP_04316532.1| hypothetical protein bcere0002_11950 [Bacillus cereus ATCC 10876] gi|228593961|gb|EEK51764.1| hypothetical protein bcere0002_11950 [Bacillus cereus ATCC 10876] Length = 486 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|309792129|ref|ZP_07686601.1| sensor histidine kinase PAS domain-containing protein [Oscillochloris trichoides DG6] gi|308225670|gb|EFO79426.1| sensor histidine kinase PAS domain-containing protein [Oscillochloris trichoides DG6] Length = 663 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 74/229 (32%), Gaps = 16/229 (6%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 + + L S + +L + I H+I +P+ I S +LL++ + E+ Q Sbjct: 432 RRRLEAQLAQSAKIASLGVMAGGIAHEIRNPLAIIAASAQLLEDHPDDPELRQQCVQKIV 491 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +S+ LKF ++ L + ++ + V + + + Sbjct: 492 TSAQRASLIIEQLLKFSHPPQERFRPLNIHATLEETFNLLNHQMLVSQVILRRDFSPDVP 551 Query: 111 LSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL + A ++P+GG++T++ + S G+ Sbjct: 552 RLYGNPELLQQVFTNLILNACNAMPQGGQLTVTTRLSGEHVELRFTDTGHGITKEHAAKI 611 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T+ + + +++ L L Sbjct: 612 FDPFFTTRTVGKGTGLGLSISYSIIQQHQGTLEVVSEPGTGATFVIRLP 660 >gi|229078619|ref|ZP_04211176.1| hypothetical protein bcere0023_12840 [Bacillus cereus Rock4-2] gi|228704689|gb|EEL57118.1| hypothetical protein bcere0023_12840 [Bacillus cereus Rock4-2] Length = 486 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|229172537|ref|ZP_04300096.1| hypothetical protein bcere0006_16490 [Bacillus cereus MM3] gi|228611008|gb|EEK68271.1| hypothetical protein bcere0006_16490 [Bacillus cereus MM3] Length = 483 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59 + +++ + L S I HD+ +PI AI ++ + E + Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 302 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + + +D E+V + D ++ + ++ Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGITVRWDAQK 362 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160 +++ N+ + + + + +K NG Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ + E L+ L+K Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481 >gi|229003976|ref|ZP_04161781.1| hypothetical protein bmyco0002_9450 [Bacillus mycoides Rock1-4] gi|228757252|gb|EEM06492.1| hypothetical protein bmyco0002_9450 [Bacillus mycoides Rock1-4] Length = 542 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 19/221 (8%), Positives = 63/221 (28%), Gaps = 11/221 (4%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61 + ++ V L + I H++ +P+ I ++LL + ++ + Sbjct: 313 ELLKKSDTLKAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEAGEDKEYFRLIFSEIRGIET 372 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------DLSRE 114 I +F+ +A + ++ V+ + T + Sbjct: 373 ILQEFLSIAKPNVVVFEPKNLCTILDNVVALISTQAIMKNIHITLNMDFENLLVECCEIQ 432 Query: 115 RAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++ N+ + ++ + + E + + G PE+ ++ + Sbjct: 433 LKQVFFNILQNSIEAIQNGQEITINVKKHNSTEVMICISDKGVGI-PPERIKRLGEPFYS 491 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 492 TKEKGTGVGLMISYQIIESHGGKINIRSQVGKGTTVIVFLP 532 >gi|197117920|ref|YP_002138347.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087280|gb|ACH38551.1| sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 488 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 67/227 (29%), Gaps = 15/227 (6%) Query: 3 KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 + + S + + LL + + H+I +P+ AI +L E + + ++ I Sbjct: 257 EARNEAIRSEKMASVGLLAAGMAHEIGTPLAAIMGYSGILSEEVAGDPEKSDYLRRITEE 316 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------GEK 108 S ++ + GS I + + + + + + +++ Sbjct: 317 SKRIDRIVRGLLDYARPKGSQREEIEVLQLLEKVVELLEAQGALKLLEVTVEAEPSLPRL 376 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL M A ++P+GGK+ + + G Sbjct: 377 YADPHQLEQLLINLIMNAKDAMPKGGKLQLKGMSVGGGVAIEVADTGEGMPPEHLPLVFD 436 Query: 169 DGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A L + L Sbjct: 437 PFFTTKEPGKGTGLGLAIAARIAESCGGTLTVQSELGEGSRFRLTLP 483 >gi|300938771|ref|ZP_07153484.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300456281|gb|EFK19774.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 458 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|229068985|ref|ZP_04202278.1| hypothetical protein bcere0025_11930 [Bacillus cereus F65185] gi|228714097|gb|EEL65979.1| hypothetical protein bcere0025_11930 [Bacillus cereus F65185] Length = 486 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] Length = 587 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 75 G-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L + + + +V I +I +NL Sbjct: 426 QQGFKLSVGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582 >gi|147678975|ref|YP_001213190.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146275072|dbj|BAF60821.1| hypothetical signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 582 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 72/237 (30%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51 K + S L A+ + + + H++ + + I + +LL E +++ Sbjct: 340 TKMEAQLMQSAKLAAIGEMAAGVAHELNNQMTVIIGTAQLLLRDKEEGSFESEALKDIVN 399 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107 L F R D + + +I+ I +K V V Sbjct: 400 CGLRCKKIIQNLLTFSRQDRYPLAPTDLNDVVERVLSLIQYQINRNKIVIVKDLAPDLPR 459 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLAR 159 S++ ++L+N + A +L + + + +++ NG Sbjct: 460 ITANSQQIQQVLINFLLNARDALEGLEREGRIEISSSLREVEGEGKKVVVTVRDNGVGI- 518 Query: 160 FPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + S + + +A + + + S +L Sbjct: 519 EKENLPKIFNPFYTSKDASKGTGLGLSVSLGIAEAHGGCIEVDSTPGEGSTFSLVLP 575 >gi|197118049|ref|YP_002138476.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] gi|197087409|gb|ACH38680.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] Length = 396 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + S L +L L + + H+I +P+ +I ++L+ E E + + Sbjct: 166 LRRAQAEVVQSEKLASLGYLSAGMAHEIRNPLNSIALFVQLIKTGLDEHERLDYVEKILK 225 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L + S Sbjct: 226 EVDRIDNILAKLLDASKRPKFEISEVRVDRVLEHTLDAFTPQLRQKRIRAVTDFKSIPPA 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ + +P G + + ++ + + G PE I Sbjct: 286 IKADPMEIEQIFTNLFLNSIYVMPEEGTLAVELEGDEQWITVRVSDTGPGI-PPENLPNI 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + K ++ E D L Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKTYKGKIEVEKSDSLGTTFLVRLP 391 >gi|94968803|ref|YP_590851.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Koribacter versatilis Ellin345] gi|94550853|gb|ABF40777.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Koribacter versatilis Ellin345] Length = 1255 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 63/230 (27%), Gaps = 23/230 (10%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIR 54 + S + A+ L S + H++ +P+ AI +LL +Q + Sbjct: 1016 QAKLIHSEKMAAVGQLVSGVAHEVNNPLTAIMGYADLLTSSPDIPPDARRDLGIILQEAQ 1075 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111 + L F R + + VD L Q+ + + Sbjct: 1076 RTKQIVQNLLSFARQSVPHREPVDLNAVLARTLQLRQYDFVNHGVRVEEDLDPNLPPVLG 1135 Query: 112 -SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPEKFTQI 167 ++ ++ LN+ A+ ++ + + + NG P+ +I Sbjct: 1136 DPQQLQQVFLNVVNNAYDAVREVARPPAVRISTGAVNGVVEVQISDNGPGISMPD---RI 1192 Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 D + + + E+ + L Sbjct: 1193 FDPFFTTKGVGKGTGLGLSICYGIVREHGGEITCVNHPEGQGATFFIRLP 1242 >gi|228964396|ref|ZP_04125510.1| hypothetical protein bthur0004_12450 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795253|gb|EEM42745.1| hypothetical protein bthur0004_12450 [Bacillus thuringiensis serovar sotto str. T04001] Length = 508 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDYMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504 >gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] Length = 571 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 410 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 469 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGKGTTFTVVLPK 566 >gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1] gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1] Length = 576 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + + D + +I S + + Sbjct: 352 FVANVSHELRTPITSIKGFSETLLDGAMNDKETLEMFLNIILRESDRLQSLITDLLDLSK 411 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 +L T + LI + I + + ++ + S ++ +N Sbjct: 412 MEKQGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLAEVDSFRIKQVFIN 471 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 L A P GG+V++S++ S + + ++ NG E F + + Sbjct: 472 LIGNAITYTPAGGEVSVSLKQSDSVIVIEVRDNGIGIEESEFPRIFERFYRVDKARSRDS 531 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + E + + L K Sbjct: 532 GGTGLGLAIVKHLIEAHGGTIGVESKVNEGTTFTVTLNK 570 >gi|313122883|ref|YP_004033142.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279446|gb|ADQ60165.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 635 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 76/242 (31%), Gaps = 31/242 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + D S + H++ +P+ ++ +E L + I + + + + + Sbjct: 381 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 440 Query: 59 SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I +++ ++ + + +Q + + Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVAHLLNRFDMIVEHDQGEAQSDTKEYVI 500 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + +++ N+ A P GG +T+ + ++N+ + S+ G Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + H Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620 Query: 213 LE 214 L Sbjct: 621 LP 622 >gi|15804594|ref|NP_290635.1| sensor protein ZraS [Escherichia coli O157:H7 EDL933] gi|12518935|gb|AAG59200.1|AE005632_1 sensor kinase for HydG, hydrogenase 3 activity [Escherichia coli O157:H7 str. EDL933] Length = 458 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 81/219 (36%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERA-- 116 L+ ++ +VD + Q++ +D + +++ + ++ + Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANCREIQLRFTANDTLPEIQADPDRL 350 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTAXZSGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + ++ + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGARFTLWLP 448 >gi|228907577|ref|ZP_04071434.1| hypothetical protein bthur0013_17440 [Bacillus thuringiensis IBL 200] gi|228852069|gb|EEM96866.1| hypothetical protein bthur0013_17440 [Bacillus thuringiensis IBL 200] Length = 490 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59 + +++ + L S I HD+ +PI AI ++ + E + Sbjct: 250 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 309 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + + +D E+V + D ++ + ++ Sbjct: 310 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQNKGIAVRWDAQK 369 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160 +++ N+ + + + + +K NG Sbjct: 370 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 429 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ + E L+ L+K Sbjct: 430 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 488 >gi|311278812|ref|YP_003941043.1| signal transduction histidine kinase, nitrogen specific, NtrB [Enterobacter cloacae SCF1] gi|308748007|gb|ADO47759.1| signal transduction histidine kinase, nitrogen specific, NtrB [Enterobacter cloacae SCF1] Length = 612 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 73/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K L + L L L + + H++ +P+ AI ++++ + + Sbjct: 377 RKETQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTTLPAHQEYLSVVLN 436 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKID 110 I + L F R V +G+ +++ + + Sbjct: 437 EIDSINKVIQQLLDFSRPRQSQWQQVQLNALIGEALILVQTSGVQARIDFNTELDADLPT 496 Query: 111 LSRER---AKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +R ++LLN+ + A ++ RG + +++ +++ NG + Sbjct: 497 IVADRELLKQVLLNILINAVQAIGARGSIRIRTWRETATHLAIAIEDNGGGIDIA-LQKK 555 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + +L Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVTSTPGCGATFTLILP 603 >gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] Length = 558 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +E+ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVEMKELLEEIKMVLENKSQDKEISLQVDVLRHVSVIGDPSRLKQIFINLV 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + ++ + G E +I + Sbjct: 457 NNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + E + L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPK 553 >gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 456 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 24/227 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + ++ + +I + + Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEAREKFLDIIDFEAERLTRLIND 284 Query: 67 M------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + L +E+ +D KR I Sbjct: 285 ILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLTIIANRDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL GG V +S + + I ++ NG +K ++ + Sbjct: 345 FHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVEDNGIGI-PKDKIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + K + E + + Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRFNR 450 >gi|229160849|ref|ZP_04288839.1| hypothetical protein bcere0009_16380 [Bacillus cereus R309803] gi|228622586|gb|EEK79422.1| hypothetical protein bcere0009_16380 [Bacillus cereus R309803] Length = 483 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59 + +++ + L S I HD+ +PI AI ++ + E + Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 302 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + + +D E+V + D ++ + + Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIVVRWDAQK 362 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160 +++ N+ + + + + +K NG Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ + E L+ L+K Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481 >gi|239825976|ref|YP_002948600.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. WCH70] gi|239806269|gb|ACS23334.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. WCH70] Length = 581 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 + K F +S L L + I H+I +P+ AI ++LL E+ ++ + +I Sbjct: 341 LKKTEEFIRTSEKLSVAGQLAAGIAHEIRNPLTAIKGFIQLLQFELDVKKPYLHIIESEI 400 Query: 58 MSAI-------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + K F + L + + + + ++ + I+ Sbjct: 401 QRIELILGELLVLAKPQATKFTKSDIGVLLQHVTTLLETQGILHNIQIITKIDPSLPLIE 460 Query: 111 LSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIV 168 ++ +N A ++ GG + I Q + G E+ +I Sbjct: 461 CDENGLKQVFINFLKNAMEAMKSGGHIFIEAQKKDEYSVLIRFIDEGCGI-PKEQLEKIG 519 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ + L Sbjct: 520 KPFFTTKEKGTGLGIMISKKIIEDHGGTMSIMSEENKGTTVEVTLP 565 >gi|229017928|ref|ZP_04174806.1| hypothetical protein bcere0030_24640 [Bacillus cereus AH1273] gi|229024149|ref|ZP_04180616.1| hypothetical protein bcere0029_24730 [Bacillus cereus AH1272] gi|228737145|gb|EEL87673.1| hypothetical protein bcere0029_24730 [Bacillus cereus AH1272] gi|228743353|gb|EEL93475.1| hypothetical protein bcere0030_24640 [Bacillus cereus AH1273] Length = 581 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 71/226 (31%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS 57 K S L A+ L + + H++ +P+ I ++L +++ E ++ Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110 +I +F+ +A S + + V+ + Sbjct: 403 RIEVILQEFLSIAKTDEISTEEKNIYQVFKNVVSLMNTKAIMTNIQVELFADSDELAIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + +++ I ++ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGKISIHMKEINEDGVIIAVVDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIVESHQGTISIMSDVGVGTTVTIFLPK 567 >gi|197118969|ref|YP_002139396.1| PAS domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088329|gb|ACH39600.1| sensor histidine kinase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 539 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 75/231 (32%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 M + + L A+ L +R+ H+I +P+ AI S++L+ +++ +L + Sbjct: 309 MKRLAAGLKRADRLAAVGELSARMAHEIRNPLAAISGSVQLVALRPWADEKDKRLFSIIL 368 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVSWTGE 107 +R Y L + V +V Sbjct: 369 RETDRLDGLLRDFLFYAKPTQPTKIPLKLRRVIADLCSLLSTDPRLRGVTIENRVPEELV 428 Query: 108 KIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL + + ++ + K E S++ +G+ + + Sbjct: 429 VVFDKDQCSQVFWNLVVNSAEAIAGEGTIVIDACAASNGEKEEARISVRDSGSGMKQADV 488 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + R++ + + ++ L Sbjct: 489 K-RVFEPFFTTKKGGTGLGLATVYRIVETHGGRMVVDSAEGAGTTVTLYLP 538 >gi|312127465|ref|YP_003992339.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] gi|311777484|gb|ADQ06970.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] Length = 575 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + I+D+ + +I + + + Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + ++ + ++ ++ + + V+V E Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDVKVQEGLEMNIYRDWL 462 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I +NL A GKV ++V+ S + + + G E +I + Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKSNSIVVIKVTDTGIGIPKKEI-ERIFERFYRVD 521 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ E + + + Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVKLYGGKVWVESQEGIGSEFTVTIP 566 >gi|298529632|ref|ZP_07017035.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511068|gb|EFI34971.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 400 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 29/233 (12%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----------------VM 50 + +L + + H++ +P+ AI+ E L E ++ Sbjct: 163 QVEKMATIGMLAAGVAHEVNNPMAAINGFAEGLRRRIPRIEKSVDPELAQDFREYTDIIL 222 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + + L F R ++ + + ++++ + K ++V + Sbjct: 223 KECKRCQKIIQTLLTFSRPKHFSFSPINLNRVVNETLRLVDHSLRKRKGLKVKLDLQDGL 282 Query: 109 ---IDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +++LNL + A ++ + S + +NE ++ +G P+K Sbjct: 283 PLINADESQLKQVILNLLVNAKDAIQDKGLITIKTSAFEHENEVCLCVEDDGCGI-DPDK 341 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + I + + + + L Sbjct: 342 MDKLFEPFFTTKPVGKGIGIGLASCYNIVESHGGEISVTSEPGKGSRFTVCLP 394 >gi|89100421|ref|ZP_01173284.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89084850|gb|EAR63988.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 412 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 12/225 (5%) Query: 2 AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52 + L S L + + I H+I +P+ +I ++LL G + + Sbjct: 178 KEQADLLLQKSEKLALVGQMAAGIAHEIRNPLTSIKGFIQLLKAEGNREYADIAISELDR 237 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 I L ++ K + + + + Q V + +I Sbjct: 238 INLIVGEFLVLAKPAAAVYRVCDLKKLIQEVVVLIQPQCLIHNVQIITGLDLDESEIWCE 297 Query: 113 RER-AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +N+ + ++P G + +K G T + + Sbjct: 298 ENQLKQVFINMIKNSAEAMPDGGTITIKAADRKDGHVAVMIKDEGTGIPPERINT-LGEP 356 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + V +L K Sbjct: 357 FYTTKEKGTGLGLMTSFKIIENHSGLVKVSSEVNKGTVFEIILPK 401 >gi|222056453|ref|YP_002538815.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221565742|gb|ACM21714.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 551 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRL 55 K + L D L A+ L +R+ H+I +P+ +I +++L+ + + ++ Sbjct: 310 KQMEAKLKRADRLAAVGELSARMAHEIRNPLASISGAVQLIAQSDATCAKDKQLLGIVLR 369 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + ++ T L + + F + + + + Sbjct: 370 ETDRLNELIRDFLEYARPTPPAKIHLDLALLIQDLTSLLKADHRFTGISVDMHIPKRTKI 429 Query: 109 IDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLAR 159 ++ ++ NL + A ++P S + + NG Sbjct: 430 DFDLQQCKQVFWNLLVNAAEAMPGGGEISVRAEVISDMASGISVGDLIKIEVIDNGMGMN 489 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + V + + +L + D + L Sbjct: 490 PQDVKN-VFEPFFTTKANGTGLGLATVYRIIESHGGIILVDSKQDQGTRFTVFLP 543 >gi|196234735|ref|ZP_03133543.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196221203|gb|EDY15765.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 415 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53 ++ + S L AL L + + H+I +P+ ++H L+L++ ++ + + Sbjct: 170 RRSTEETIQSEKLTALTLLAAGVAHEIGNPLNSLHIHLQLMERKLRKVPAAARADLQKSL 229 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWT 105 ++ ++ G L ++ + + + V+ Sbjct: 230 DVAKEEITRLDSIVQQFLGAIRPARLEARLENVNALVQEAVAFLQPEIEDRNVLVEHELR 289 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +R ++ + + ++ GG + I G PE Sbjct: 290 SDLPLVEVDRNQLKQAFYNVLKNSFQAMKSGGLLRIRTDMDDAFVKIRFADTGGGI-SPE 348 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I + + + V + E+ + + H + L+ L Sbjct: 349 NMSKIFEPYFTTKASGSGLGLLIVRRIVREHGGEIDLASDEGHGLTLTIRLP 400 >gi|229029584|ref|ZP_04185663.1| hypothetical protein bcere0028_16730 [Bacillus cereus AH1271] gi|228731706|gb|EEL82609.1| hypothetical protein bcere0028_16730 [Bacillus cereus AH1271] Length = 483 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59 + +++ + L S I HD+ +PI AI ++ + E + Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 302 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + + +D E+V + D ++ + ++ Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIAVRWDAQK 362 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160 +++ N+ + + + + +K NG Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ + E L+ L+K Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481 >gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 584 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 22/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58 + L S H++ +P+ I +++ LL +E+ ++L Sbjct: 344 SEYRALERAKSA--FVSDFSHELRTPLTTIQSAVGLLQRARERLDPLENRALELAEGELS 401 Query: 59 SAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEK 108 ++ + ++ Y+ + + +E R + Sbjct: 402 RIRAMVEELMTLAQMDSWQYSLQLAPAGLDRILRDAVEAVEPKALRFGIEINLYEAGVHL 461 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165 +++ ++ LNL A G +V ++V +S + + +K G + F Sbjct: 462 TCDAQKLYQVFLNLLDNAVKYSEEGSRVDVTVAESGEQAVVRVKDTGVGIPEKDLPHLFE 521 Query: 166 QIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + + E + L K Sbjct: 522 RFYRVEKDRSRSTGGSGLGLAICKQIVEMHGGSISVESRLGEGSTFTVRLPK 573 >gi|218233885|ref|YP_002366117.1| sensor histidine kinase KinD [Bacillus cereus B4264] gi|218161842|gb|ACK61834.1| sensor histidine kinase KinD [Bacillus cereus B4264] Length = 498 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111 + + T ++ + I + I + + Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFYLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494 >gi|225155782|ref|ZP_03724269.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224803434|gb|EEG21670.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 409 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 54/236 (22%), Gaps = 28/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSM 58 + + + + H++ +P+ I E L + G + Q R Sbjct: 169 RQKRLEAVRKE-----FVANVSHELRTPLSVIKGYAETLIDGGPDMPPAQRDRFLHIIRR 223 Query: 59 SAIIRLKFMRLAFGYTGSVDSLI---------------GLGDIEQVIEDFIAVDKRVQVS 103 + + L + + + Sbjct: 224 HTDRLNTLLEDLLTLSRLESPNTGLRREPGDLDRLVKTLLDEYRTRPAAARHTLQLTLGA 283 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 G + + ++ NL A P G ++ I+++ +E + NG + Sbjct: 284 APGPLNFDALKLTQVFHNLLDNALKYTPPGSRIDIAIRPKGSEIEICVSDNGPGIPVADL 343 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E L Sbjct: 344 PHIFERFYRVDKGRSRETGGTGLGLSIVKHIVQLHGGRVWVESEPGRGASFHFTLP 399 >gi|229917024|ref|YP_002885670.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229468453|gb|ACQ70225.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 651 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 60/231 (25%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++I L L + + H++ +P+ +I ELL E + + +I + Sbjct: 411 RDITQETEINRLKTELVATVSHELRTPLTSILGFSELLKSRQLENTKRERYLDMIASETK 470 Query: 59 SAIIRLKFMRLAFGYTGSVDSLI---------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + +E + Sbjct: 471 RLERLVSDLLDVQKMEAGMSVPDFKVESLYDLLSDLLEIHAGSTEHHFFHFDCDESLFVA 530 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ N+ A PRGG VT+ V + + G E +I D Sbjct: 531 GDPAQLRQVFSNILNNAIKYSPRGGNVTVDVTCEDDTIQIGITDEGLGL-SEEDAARIFD 589 Query: 170 GNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + + + + + L Sbjct: 590 KFYRSASEESKRIGGTGLGLAICKEIVQLHGGTISVQSQLGEGTTMIVELP 640 >gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] Length = 558 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +E+ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + + +V V I +I +NL Sbjct: 397 QQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVLRHVSVIGDPSRLKQIFINLV 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + ++ + G E +I + Sbjct: 457 NNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + E + L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPK 553 >gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] Length = 561 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +E+ + +I S ++ + Sbjct: 340 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIE 399 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + + +V V I +I +NL Sbjct: 400 QQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVLRHVSVIGDPSRLKQIFINLV 459 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + ++ + G E +I + Sbjct: 460 NNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 518 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + E + L K Sbjct: 519 GTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPK 556 >gi|228900015|ref|ZP_04064251.1| hypothetical protein bthur0014_12240 [Bacillus thuringiensis IBL 4222] gi|228859629|gb|EEN04053.1| hypothetical protein bthur0014_12240 [Bacillus thuringiensis IBL 4222] Length = 486 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 592 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 ++ L + + + H++ +PI + E + + +++++I S Sbjct: 356 RDKTEETKLEKLKSDFIANVSHELRTPIAMLQGYSEAIIDGVVTTEEERIDMIRVIYDES 415 Query: 58 MSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + +V + + E + + S Sbjct: 416 QRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQIETDFSD 475 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L NL A P G VT+S+ + +N + G + Sbjct: 476 ETLISIDEDRIEQVLTNLIDNAIRHTPADGSVTVSMINEQNYAKIQVSDTGQGIPQDDLP 535 Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + R+ + ++ + L Sbjct: 536 YVFERFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTTFTFYLP 590 >gi|319646280|ref|ZP_08000510.1| sensor protein [Bacillus sp. BT1B_CT2] gi|317392030|gb|EFV72827.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 736 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K + L D +V L + I H+I +P+ A+ ++LL ++ + + Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSIQNEDHALYFNVITS 560 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWTGE 107 + + +I ++++D + Sbjct: 561 ELKRIESIITEFLILAKPQAIMYEEKNIVKIMQDTMDLLHAQANLDNVQMHLKCEDGIPL 620 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166 + ++ +N+ A +P GG V +S++ + I SL G +K + Sbjct: 621 IYCEPNQLKQVFINILKNAIEVMPDGGNVYVSIKPKGDDHIIVSLADEGIGM-TEDKLKR 679 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+K ++ E + L Sbjct: 680 LGEPFYTTKERGTGLGLMVSYKIIEEHKGKIEVESEEGRGTTFHLTLP 727 >gi|26250775|ref|NP_756815.1| sensor protein ZraS [Escherichia coli CFT073] gi|227885466|ref|ZP_04003271.1| sensor protein ZraS [Escherichia coli 83972] gi|300979678|ref|ZP_07174650.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301047739|ref|ZP_07194797.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|26111206|gb|AAN83389.1|AE016770_189 Sensor protein zraS [Escherichia coli CFT073] gi|227837540|gb|EEJ48006.1| sensor protein ZraS [Escherichia coli 83972] gi|300300384|gb|EFJ56769.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300409462|gb|EFJ93000.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|307556146|gb|ADN48921.1| sensor protein ZraS [Escherichia coli ABU 83972] gi|315294339|gb|EFU53690.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] Length = 458 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|258510738|ref|YP_003184172.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477464|gb|ACV57783.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 420 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 70/229 (30%), Gaps = 20/229 (8%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56 M K + +S++ A LC+ I H+I +P+ L+L E + ++L Sbjct: 192 MRKKLQEFEKVSAL---AQLCAGIAHEIRNPLTTARGFLQLFAERCDDKDRGYLELTISE 248 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEK 108 L+ + + + +I + + F+ + + Sbjct: 249 LDRIRELLEDFMGLCRPDREEAAEVDMVEIARSVHRFLVPEASLCDIAFELNVPAHPIPA 308 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166 + ++L+NL A + + + + ++ + + NG E + Sbjct: 309 AVRPAQIKQVLINLVQNALQACRGQAHAVVRLDVAEKEDRVLVQVVDNGCGI---EHMDR 365 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + + + ++ + K Sbjct: 366 IFRPFYTTKSTGTGLGLFVCKHIIESHGGSISVRSQVGAGTTVTVEIPK 414 >gi|157144823|ref|YP_001452142.1| sensory histidine kinase AtoS [Citrobacter koseri ATCC BAA-895] gi|157082028|gb|ABV11706.1| hypothetical protein CKO_00550 [Citrobacter koseri ATCC BAA-895] Length = 593 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K L + L L L + + H++ +P+ AI ++++ + + + + Sbjct: 358 RKEAQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQINLPVHQEYLSVVLK 417 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 K ++ ++ S I +IE+ + + + V Sbjct: 418 EIDSINKVIQQLLDFSRPRQSQWQQVSINTLIEEALILVQTSGVQARINFNTEFNAALPT 477 Query: 116 --------AKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ RG + + + +++ NG + Sbjct: 478 IVADRELLKQVLLNMLINAVQAIGARGEIRIRTWRYTTTHLAIAIEDNGCGIDVA-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + +L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIYVTSMPGCGATFTLILP 584 >gi|149922416|ref|ZP_01910849.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149816696|gb|EDM76187.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 495 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 63/224 (28%), Gaps = 13/224 (5%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + L AL + + I H++ +P+ ++ +LL+E EV + R I Sbjct: 267 SERRSAQQRQLAALGEMSAVIAHELRNPLASLKGHAQLLEERLDRLEVDERTRRKVARVI 326 Query: 62 IRLKFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE- 114 + + F G ++ + RV+V + Sbjct: 327 HEAQRLEELSSGLLTFVRLGEIEPSSVALETLVSEALAGLDAARVEVDLRRAPERWPLDA 386 Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 ++L N+ + + +F ++ G + +I + Sbjct: 387 GRMQQVLGNIIDNGLQASAEDQGRVDVRVFVERGRCVFEVRDRGPGVPL-DARERIFEPF 445 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + V + + Sbjct: 446 HTTRTRGTGLGLAVSRRIVELHGGTIGVTDHPEGGAVFRVAIPR 489 >gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] Length = 558 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 553 >gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1] gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1] Length = 587 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 582 >gi|197334981|ref|YP_002156203.1| C4-dicarboxylate transport sensor protein DctB [Vibrio fischeri MJ11] gi|197316471|gb|ACH65918.1| C4-dicarboxylate transport sensor protein DctB [Vibrio fischeri MJ11] Length = 680 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + S L +L L + I H+I +P I + EL+ +E + E ++ I Sbjct: 434 LKQAQDKLVMSEKLASLGELTAGIAHEINNPTAVILGNAELIKYELGEEAHVIAEELETI 493 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTG 106 + + G D + + D V+ + Sbjct: 494 MEQIDRIRNITRSLLQYSRQGGIQDEVTWQYINPIIEESVTLVRTGAHKRDIEVEFDFEQ 553 Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 ++L+NL M ++ T + + I ++ G Sbjct: 554 PPRVEVNRHHLLQVLVNLQMNGIHAMNSKGKLIIRSRTWCHEGVEFGAIIEVEDFGCGI- 612 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I D + D + L + + V + L Sbjct: 613 AGEQLNRIFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIKVRSQLGKGTVFTIYLP 667 >gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] Length = 587 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 582 >gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] Length = 587 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 486 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 582 >gi|228920146|ref|ZP_04083495.1| hypothetical protein bthur0011_11630 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839602|gb|EEM84894.1| hypothetical protein bthur0011_11630 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 486 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I I V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEIALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|253701764|ref|YP_003022953.1| histidine kinase [Geobacter sp. M21] gi|251776614|gb|ACT19195.1| histidine kinase [Geobacter sp. M21] Length = 369 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 68/224 (30%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMS 59 + L AL L + + H+I +P+ +I + E+L E G DE ++++ S Sbjct: 144 EEQLRRAERLSALGELSAILAHEIRNPLASIRGTAEILKEDGAAASRDEFLEILVKESDR 203 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKID----LS 112 ++ +V + I A + V++ +T ++ Sbjct: 204 LNRVVEDFLRMARPEPAVKKECDINYELANIVTLLSAQARGEEVELRFTPGEVPTLSADP 263 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIVDG 170 + + +N+ + + G+V ++ NG E +I + Sbjct: 264 EKLRQAFMNVILNGIQASAPRGRVQVTTSYDLQSRSIEIRFSDNGPGI-AAEAIGKIFEP 322 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L E L Sbjct: 323 FFTTKGSGTGLGLSITKKILEGHGGTLEVESTPGEGACFRVRLP 366 >gi|229126751|ref|ZP_04255763.1| hypothetical protein bcere0015_12080 [Bacillus cereus BDRD-Cer4] gi|228656691|gb|EEL12517.1| hypothetical protein bcere0015_12080 [Bacillus cereus BDRD-Cer4] Length = 508 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 20/223 (8%), Positives = 58/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIAFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504 >gi|30019486|ref|NP_831117.1| sporulation kinase D [Bacillus cereus ATCC 14579] gi|29895030|gb|AAP08318.1| Sporulation kinase D [Bacillus cereus ATCC 14579] Length = 498 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 20/223 (8%), Positives = 58/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIAFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494 >gi|330445936|ref|ZP_08309588.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490127|dbj|GAA04085.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 664 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53 + + + S L AL L + I H+I +P+G I ++EL+ + E + I Sbjct: 415 LNQARSKLVVSEKLAALGELTAGIAHEINNPLGVILGNVELIQFELGDNTVQVQEELDAI 474 Query: 54 RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + + V+ V + Sbjct: 475 HAQIDRIRNITRSLLQYSRQGGVQNEVTWHHLNQIVEESLTLVRSGTKKMDVEFDVDLQA 534 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIFSLKINGNLA 158 + ++L+NL M ++ + I + I + +G Sbjct: 535 KCSVEVNRHQLLQVLVNLQMNGIHAMDDQGRLSIKTQDWIDDSNQVLGAIVKIVDHGCGI 594 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I D + + L + + + + L Sbjct: 595 -PKENLERIFDPFFTTRRSGTGLGLSVSQSLIEDIGGEIEVDSEVGKGTTFTVYL 648 >gi|212639786|ref|YP_002316306.1| signal transduction histidine kinase, nitrogen specific, contains PAS/PAC domain [Anoxybacillus flavithermus WK1] gi|212561266|gb|ACJ34321.1| Signal transduction histidine kinase, nitrogen specific, contains PAS/PAC domain [Anoxybacillus flavithermus WK1] Length = 418 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 72/220 (32%), Gaps = 11/220 (5%) Query: 5 ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 L L + L + I H+I +P+ +I L+++ + ++ I + Sbjct: 193 EQLLLKKEKLSVIGELAAGIAHEIRNPLTSIKGFLQMMKETKEVDERFVQIMLDEIERVN 252 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDLSRE 114 L + + L + + V + + + E Sbjct: 253 QIVSHLLVLAKPQMKSYKPLALHDVLEYVIGLFTYEAILQNVQLKYEPRTSAVVYGDKNE 312 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ +N+ A ++PRGG +TIS +D + ++ G E+ I + Sbjct: 313 LIQVFVNVVKNALEAMPRGGVLTISAKDEADCVYVIVEDTGKGI-ERERLKHIGEPFYTL 371 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + HE+K + E + +L Sbjct: 372 KEKGMGLGLTTSMKIIHEHKGTMQLESKVGKGTRVQIMLP 411 >gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis] Length = 611 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 440 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + ++ +T + + + ++ Sbjct: 441 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLWVELDTDKVIQV 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 L N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 501 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 560 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 561 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 601 >gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22] gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22] gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B] gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A] Length = 609 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + ++ +T + + + ++ Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLWVELDTDKVIQV 498 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 L N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 >gi|328911411|gb|AEB63007.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens LL3] Length = 499 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 + ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKTEEDQLYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110 + + T + L DI I I V+ + V+ + Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++LN+ A S+ GG+++I ++ ++ + + NG + I Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + + D ++ L Sbjct: 452 FVTSKEKGTGLGLVVCKRIVLMYGGSIDIQSEVDKGTEVTITLP 495 >gi|328553738|gb|AEB24230.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens TA208] Length = 499 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 + ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKTEEDQLYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110 + + T + L DI I I V+ + V+ + Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++LN+ A S+ GG+++I ++ ++ + + NG + I Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + + D ++ L Sbjct: 452 FVTSKEKGTGLGLVVCKRIVLMYGGSIDIQSEVDKGTEVTITLP 495 >gi|326939058|gb|AEA14954.1| sporulation kinase D [Bacillus thuringiensis serovar chinensis CT-43] Length = 498 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494 >gi|308173336|ref|YP_003920041.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens DSM 7] gi|307606200|emb|CBI42571.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens DSM 7] Length = 499 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 + ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKTEEDQLYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110 + + T + L DI I I V+ + V+ + Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++LN+ A S+ GG+++I ++ ++ + + NG + I Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + + D ++ L Sbjct: 452 FVTSKEKGTGLGLVVCKRIVLMYGGSIDIQSEVDKGTEVTITLP 495 >gi|228938549|ref|ZP_04101157.1| hypothetical protein bthur0008_12140 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228821147|gb|EEM67164.1| hypothetical protein bthur0008_12140 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 508 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504 >gi|52079902|ref|YP_078693.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52785274|ref|YP_091103.1| KinE [Bacillus licheniformis ATCC 14580] gi|52003113|gb|AAU23055.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52347776|gb|AAU40410.1| KinE [Bacillus licheniformis ATCC 14580] Length = 736 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K + L D +V L + I H+I +P+ A+ ++LL ++ + + Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSIQNEDHALYFNVITS 560 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWTGE 107 + + +I ++++D + Sbjct: 561 ELKRIESIITEFLILAKPQAIMYEEKNIVKIMQDTMDLLHAQANLDNVQMHLKCEDGIPL 620 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166 + ++ +N+ A +P GG V +S++ + I SL G +K + Sbjct: 621 IYCEPNQLKQVFINILKNAIEVMPDGGNVYVSIKPKGDDHIIVSLADEGIGM-TEDKLKR 679 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+K ++ E + L Sbjct: 680 LGEPFYTTKERGTGLGLMVSYKIIEEHKGKIEVESEEGRGTTFHLTLP 727 >gi|325496735|gb|EGC94594.1| sensory histidine kinase AtoS [Escherichia fergusonii ECD227] Length = 608 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K L + L L L + + H++ +P+ AI ++++ + + E + Sbjct: 373 RKESQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLN 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L F R V + + + + + ++ + Sbjct: 433 EIDSINKVIQQLLDFSRPRKSQWQQVYLNALIEETLILAQTSGVQARIDFITELDPSLTA 492 Query: 112 SRERA----KILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++LN+ + A + RG + + N+ +++ NG + Sbjct: 493 IVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAITIEDNGCGIDLS-LQRK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGCGATFTLILP 599 >gi|229173301|ref|ZP_04300845.1| hypothetical protein bcere0006_24020 [Bacillus cereus MM3] gi|228609995|gb|EEK67273.1| hypothetical protein bcere0006_24020 [Bacillus cereus MM3] Length = 587 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 64/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEQKNIYQIYNNVVSLMNTKAIMTNIQVELYADNKDISIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + I + G ++ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGKITIHIKEINDEGVIIHVIDEGIGI-PEDRIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S I + ++ + ++ L K Sbjct: 522 PFYSSKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567 >gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] Length = 558 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 397 QQGFKLSMGTVDMKGLLEDIHMVLDNKTGEKEISLQVNALKGVSVIGDPSRLKQIFINLI 456 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553 >gi|332982073|ref|YP_004463514.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699751|gb|AEE96692.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 485 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55 AK S L AL L + I H++ +P+ + +++L+ + + + +I+ Sbjct: 246 AKLEEQLQRSERLAALGQLVAGIAHEMRNPMAIVKATVQLMQKQYKDSSEMQQYLDVIKE 305 Query: 56 SSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +K + + + ++ + Sbjct: 306 QVDRQDKIVKELLDFSRPSKSLWEDISLVELLKSVITFTRPYMDQYHIELSEKYQIDLPL 365 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I ++ +N+ + A S+P+GG++ ISV + S G+ + I Sbjct: 366 IIADGERLKQVFVNIIINAVQSMPKGGQLMISVYSDEQNVYASFADTGSGIADEDI-ENI 424 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + D + + + Sbjct: 425 FNPFYTTKYSGTGLGLAISHNIIAMHGGTIAVTRSKDGGSIFTVSIP 471 >gi|325499265|gb|EGC97124.1| sensor protein ZraS [Escherichia fergusonii ECD227] Length = 458 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ QL+ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQLMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448 >gi|322420000|ref|YP_004199223.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M18] gi|320126387|gb|ADW13947.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M18] Length = 541 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 M + + L A+ L +R+ H+I +P+ AI S++L+ ++++ +L + Sbjct: 310 MKRMAAELKRADRLAAVGELSARMAHEIRNPLAAISGSVQLVALRPWVDEKDQRLFSIIL 369 Query: 58 MSAIIRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +R Y + L + V+ QV Sbjct: 370 RETDRLDGLLRDFLFYAKPNQPTKVPLNLRRVITDLCALLATDPRLERVEIDNQVPDDLV 429 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPE 162 + +++ NL + ++ G + I V ++E S++ NG+ + Sbjct: 430 VQFDKDQCSQVFWNLVVNGAEAITVDGCICIDATLTRVNGGRSEVRISVRDNGSGMSQAD 489 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + N R+ ++ L Sbjct: 490 VK-RVFEPFFTTKKGGTGLGLATVYRIVETNGGRMSINSTQGKGTTVTLHLP 540 >gi|168698335|ref|ZP_02730612.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 480 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 14/218 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSA 60 S L AL L + + H++ +P+ AI ++++L + V+ + + Sbjct: 256 KSEHLAALGRLLAGVAHEVRNPLTAIRSTVQLWERLPAAARTPESLAAVVGSVDRINELV 315 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLS---RERA 116 L F R VD + +++ A+ ++ + + Sbjct: 316 GRLLLFARAGHEARRPVDLNAVTAETLELVRARADALGVALEPDLAPGLPPVPGAAQAVG 375 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 +++LNL A ++P GG++T + + ++ G PE + + + Sbjct: 376 QVVLNLVTNALQAMPAGGRLTCRTRATGGRVELAVTDTGPGV-PPEARDRAFEPFFTTRA 434 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + +A ++ + + L Sbjct: 435 DGTGLGLALCREVARQHGGDVTLDPPGGAGATFRLTLP 472 >gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580] gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580] gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 581 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 69/238 (28%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSM 58 M + ++ + + H++ +PI +I E L + + + ++Q + + Sbjct: 346 MTERKQL----EEMRKDFVANVSHELKTPITSIKGFTETLLDGAMNERETLLQFLSIILK 401 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVS 103 + ++ + L I + +A + + + Sbjct: 402 ESSRLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAEEKGITLTLEKPD 461 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +I LNL A P G VTIS ++ ++ G + E Sbjct: 462 KPAVASGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLEDAVQVKVRDTGIGIKQSEI 521 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + V L ++ + E + L++ Sbjct: 522 P-RIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKGTEFTVRLKR 578 >gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC 6026] Length = 616 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + S + H++ +P+ ++ +E L + I + + +I+ Sbjct: 366 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQFLHVIQDE 420 Query: 57 SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + I + + + + ++ + + Sbjct: 421 TERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSI 480 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + + +++ N+ A P GG +T+ + ++ I S+ G Sbjct: 481 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 540 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + Sbjct: 541 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYIS 600 Query: 213 LE 214 L Sbjct: 601 LP 602 >gi|281181067|dbj|BAI57397.1| two-component sensor kinase [Escherichia coli SE15] Length = 458 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGLHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448 >gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 611 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 57/232 (24%), Gaps = 28/232 (12%) Query: 10 SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSS 57 L A + + H++ +P+ I + E L++ +ED + Sbjct: 372 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAMEDPELGPRFVSVIQSQTERMI 431 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEKI 109 L R + ++ +++ + Sbjct: 432 RLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIANDVDTAW 491 Query: 110 DLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L NL A P G + + S++ G + +I Sbjct: 492 IDRDQIDQVLDNLISNAMKYTPEGGAIALEARLTEDRQLAISVQDTGIGIPKKDL-DRIF 550 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + ++ L Sbjct: 551 ERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTISLQSELGKGTKVTFTLP 602 >gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] Length = 616 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + S + H++ +P+ ++ +E L + I + + +I+ Sbjct: 366 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQFLHVIQDE 420 Query: 57 SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + I + + + + ++ + + Sbjct: 421 TERMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTI 480 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + + +++ N+ A P GG +T+ + ++ I S+ G Sbjct: 481 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 540 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + Sbjct: 541 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYIS 600 Query: 213 LE 214 L Sbjct: 601 LP 602 >gi|157157582|ref|YP_001465499.1| sensor protein ZraS [Escherichia coli E24377A] gi|300925873|ref|ZP_07141716.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|301325712|ref|ZP_07219171.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|157079612|gb|ABV19320.1| sensor histidine kinase ZraS [Escherichia coli E24377A] gi|300418063|gb|EFK01374.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300847501|gb|EFK75261.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] Length = 458 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKERLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++V +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448 >gi|219667721|ref|YP_002458156.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219537981|gb|ACL19720.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 352 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +N+ +L + L + I HD+ +P+ +I +E L + + E + Sbjct: 106 MRQNLKASLEQQNHLNHSRQELIASISHDLRTPLSSIRGYVEGLPKAVHDPEKLNRYLSV 165 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------- 106 + L + +D G + V Sbjct: 166 LKNKTALLDTLIERLFEYSQLDMDDSQGAFCLWDAKEMLESILAPVELEFADQLVQLLLA 225 Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + A++ NL A L G + I+ + + S+ +G Sbjct: 226 RPFPSVPIEANPDQIAQVFDNLISNARRYLGEKGTIAIAAKVEGADLHISVTDDGTGIAP 285 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E S L Sbjct: 286 EDLPHVFDQFYRAEKSRSRSFGGAGLGLAICQKIIENHGGEIWAESEVGVGTRFSLRLP 344 >gi|323963778|gb|EGB59277.1| hsp90-like protein [Escherichia coli M863] gi|327250476|gb|EGE62186.1| sensor protein zraS [Escherichia coli STEC_7v] Length = 458 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + + Sbjct: 291 VSELLELVKPTHLALKAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPKIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S ++ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKINVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448 >gi|59712007|ref|YP_204783.1| sensor histidine kinase [Vibrio fischeri ES114] gi|59480108|gb|AAW85895.1| sensor histidine kinase [Vibrio fischeri ES114] Length = 680 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + S L +L L + I H+I +P I + EL+ +E + E ++ I Sbjct: 434 LKQAQDKLVMSEKLASLGELTAGIAHEINNPTAVILGNAELIKYELGEEAHVIAEELETI 493 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTG 106 + + G D + + D V+ + Sbjct: 494 MEQIDRIRNITRSLLQYSRQGGIQDEVTWQYINPIIEESVTLVRTGAHKRDIEVEFDFEQ 553 Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 ++L+NL M ++ T + + I ++ G Sbjct: 554 PPRVEVNRHHLLQVLVNLQMNGIHAMNSKGKLIIRSRTWCHEGVEFGAIIEVEDFGCGI- 612 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I D + D + L + + V + L Sbjct: 613 AGEQLNRIFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIKVRSQLGKGTVFTIYLP 667 >gi|329765712|ref|ZP_08257281.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137778|gb|EGG42045.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 356 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 77/224 (34%), Gaps = 10/224 (4%) Query: 1 MAKN-ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54 M K +++ L R+ HD+ +P+ I NS++L+ + I Sbjct: 132 MKKEFKNLKRIRQEIMGELSIRVAHDLKNPLNVIKNSVQLIQFRKEPSTENYSNTLTRIE 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + ++ + L I + + + + V + VS + I ++ + Sbjct: 192 HAVIRMDHQINEVLEFVNPLPLDLQQNSLKKIFENVINEMPVPEEFTVSIPTKDIMINCD 251 Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + KI + L A ++ G + I+ ++++ +K G + +I D Sbjct: 252 QRKIEIILRNLVLNAIQAMGEKGSIIITTNETESHVKILVKDTGPGI-PHKLRFKIFDPL 310 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ + E + + L K Sbjct: 311 FTTRQIGTGLGLPICKTVIEQHGGSISFETELEKGTTFTISLPK 354 >gi|162454529|ref|YP_001616896.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161165111|emb|CAN96416.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 494 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55 + + L AL L + + H+I +P+G+I S+ELL + ++ ++I Sbjct: 244 EQATARAEQAERLAALGRLAAGLAHEIRNPLGSIAGSIELLRTGGTLSDEDRKLCEIIER 303 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + M + L V+ V+V + G Sbjct: 304 ETARLNDLVGDMLDLSRPRVPTLEGVDLSATARDVVVLAGRSGRGSDVEVRFDGPPSAPV 363 Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +++ NL A + G VT+ + + + ++ G + ++ Sbjct: 364 TADAAQMRQVVWNLVRNAIQASSAGAVVTVRLWRDPSAWLLEIRDQGRGIPAGAR-DRLF 422 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + I V + ++ + + + + Sbjct: 423 DAFFTTRTHGMGIGLAVVKRILDDHGFAIEVDSREGEGTAFRVRVP 468 >gi|228957705|ref|ZP_04119450.1| hypothetical protein bthur0005_12210 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108890|ref|ZP_04238494.1| hypothetical protein bcere0018_11660 [Bacillus cereus Rock1-15] gi|228674546|gb|EEL29786.1| hypothetical protein bcere0018_11660 [Bacillus cereus Rock1-15] gi|228801977|gb|EEM48849.1| hypothetical protein bthur0005_12210 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 508 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504 >gi|320665902|gb|EFX32933.1| sensor protein ZraS [Escherichia coli O157:H7 str. LSU-61] Length = 458 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 81/219 (36%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERA-- 116 L+ ++ +VD + Q++ +D + +++ + ++ + Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANCREIQLRFTANDTLPEIQADPDRL 350 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + ++ + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGARFTLWLP 448 >gi|15834180|ref|NP_312953.1| sensor protein ZraS [Escherichia coli O157:H7 str. Sakai] gi|168752031|ref|ZP_02777053.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4113] gi|168758600|ref|ZP_02783607.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4401] gi|168764584|ref|ZP_02789591.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4501] gi|168771476|ref|ZP_02796483.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4486] gi|168777383|ref|ZP_02802390.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4196] gi|168780389|ref|ZP_02805396.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4076] gi|168790364|ref|ZP_02815371.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC869] gi|168798362|ref|ZP_02823369.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC508] gi|195939629|ref|ZP_03085011.1| sensor protein ZraS [Escherichia coli O157:H7 str. EC4024] gi|208805634|ref|ZP_03247971.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4206] gi|208813157|ref|ZP_03254486.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4045] gi|208819722|ref|ZP_03260042.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4042] gi|209397343|ref|YP_002273520.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4115] gi|217326637|ref|ZP_03442721.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. TW14588] gi|254796001|ref|YP_003080838.1| sensor protein ZraS [Escherichia coli O157:H7 str. TW14359] gi|261227285|ref|ZP_05941566.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli O157:H7 str. FRIK2000] gi|261257032|ref|ZP_05949565.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli O157:H7 str. FRIK966] gi|291285418|ref|YP_003502236.1| sensor protein ZraS [Escherichia coli O55:H7 str. CB9615] gi|20140982|sp|Q8X614|ZRAS_ECO57 RecName: Full=Sensor protein zraS gi|13364402|dbj|BAB38349.1| sensor kinase HydH [Escherichia coli O157:H7 str. Sakai] gi|187767345|gb|EDU31189.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4196] gi|188014019|gb|EDU52141.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4113] gi|189001698|gb|EDU70684.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4076] gi|189354607|gb|EDU73026.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4401] gi|189359762|gb|EDU78181.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4486] gi|189365466|gb|EDU83882.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4501] gi|189370181|gb|EDU88597.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC869] gi|189379121|gb|EDU97537.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC508] gi|208725435|gb|EDZ75036.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4206] gi|208734434|gb|EDZ83121.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4045] gi|208739845|gb|EDZ87527.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4042] gi|209158743|gb|ACI36176.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4115] gi|209751648|gb|ACI74131.1| sensor kinase HydH [Escherichia coli] gi|209751650|gb|ACI74132.1| sensor kinase HydH [Escherichia coli] gi|209751652|gb|ACI74133.1| sensor kinase HydH [Escherichia coli] gi|209751654|gb|ACI74134.1| sensor kinase HydH [Escherichia coli] gi|209751656|gb|ACI74135.1| sensor kinase HydH [Escherichia coli] gi|217322858|gb|EEC31282.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. TW14588] gi|254595401|gb|ACT74762.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia coli O157:H7 str. TW14359] gi|290765291|gb|ADD59252.1| sensor protein ZraS [Escherichia coli O55:H7 str. CB9615] gi|320190899|gb|EFW65549.1| Sensor protein of zinc sigma-54-dependent two-component system [Escherichia coli O157:H7 str. EC1212] gi|320639094|gb|EFX08734.1| sensor protein ZraS [Escherichia coli O157:H7 str. G5101] gi|320644488|gb|EFX13551.1| sensor protein ZraS [Escherichia coli O157:H- str. 493-89] gi|320649807|gb|EFX18328.1| sensor protein ZraS [Escherichia coli O157:H- str. H 2687] gi|320655140|gb|EFX23096.1| sensor protein ZraS [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660784|gb|EFX28238.1| sensor protein ZraS [Escherichia coli O55:H7 str. USDA 5905] gi|326347145|gb|EGD70875.1| Sensor protein of zinc sigma-54-dependent two-component system [Escherichia coli O157:H7 str. 1125] gi|326347604|gb|EGD71326.1| Sensor protein of zinc sigma-54-dependent two-component system [Escherichia coli O157:H7 str. 1044] Length = 458 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 81/219 (36%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERA-- 116 L+ ++ +VD + Q++ +D + +++ + ++ + Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANCREIQLRFTANDTLPEIQADPDRL 350 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + ++ + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGARFTLWLP 448 >gi|148263898|ref|YP_001230604.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397398|gb|ABQ26031.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 832 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRL 55 + + LV+L L + I H+I +P+ I L+ L + +M Sbjct: 604 EQMREEMIRMDRLVSLGKLSAGIAHEIRNPLTGISLLLDDLHDRPAVDSESQAMMGKALA 663 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEK 108 + + + + + Q + Q + Sbjct: 664 EIERVERLISSLLNYASPPKAEFREGDINRVVQDTLLLFKKECEKQGVELVSSLQEIPSF 723 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + + LLN+ A +LP GGK+ IS + + I ++ NG + + Sbjct: 724 PFDAGKIRQALLNISKNALGALPEGGKIEISTALAGDAAIINVSDNGQGIEPEDIPL-LF 782 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ R+ + V S L Sbjct: 783 EPFFTRKTGGTGLGLSITQRIIDEHHGRITVTSSKGNGTVFSVSLP 828 >gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 470 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MAK + D+ + + H++ SP+ +I ++ + + + +++++ Sbjct: 237 MAKELE---QLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPKEKACDYLKIVQKE 293 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------W 104 + F+ + +G DI ++I + ++ V Sbjct: 294 TRRMSRLINDFLEMTKLESGQFPLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + ++L NL A G + I + ++ ++K NG + Sbjct: 354 RRIVIADKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDDKAFITIKDNGIGISPEDQE 413 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + Y V + + + + E + L Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESELGKGTAFTFTLP 466 >gi|56419263|ref|YP_146581.1| hypothetical protein GK0728 [Geobacillus kaustophilus HTA426] gi|56379105|dbj|BAD75013.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 546 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 65/234 (27%), Gaps = 23/234 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 + S L A+ + + I H++ +P+ AI + +LL + I + + Sbjct: 311 EAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRSFSKDDRIYKLLFDIYSCGK 370 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KID 110 I + + + +EQV+ + + Sbjct: 371 RCKTIIQNLLTFSRQDEYRFEDCSINDAVEQVLGLIGDQICKQNIIIQKRLDVSIELIEG 430 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGNLARFPE 162 ++ ++I+LNL + A +L + ++ + S++ NG Sbjct: 431 NVQQISQIVLNLLINAKDALEEIDIPEKIIVIETKSIVEAGEHWVVLSVRDNGKGIEEQY 490 Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A + + L K Sbjct: 491 LQEIFNPFFTTKRPGKGTGLGLSVSLGIAEAHGGTIEVVSELGKGSEFILKLPK 544 >gi|311067914|ref|YP_003972837.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus atrophaeus 1942] gi|310868431|gb|ADP31906.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus atrophaeus 1942] Length = 606 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ G E + S Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + LA + + L + + ++ ++ + I ++ Sbjct: 441 RIELILSELLMLAKPQQHAFKEHLNLKKLISEVTALLETQANLNGIFIKTAFQRDSIFIN 500 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + ++ ++K G +I + Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVEIDTTEDEHSVHVTIKDEGEGIPEK-VLKRIGE 559 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + + + K Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGTIQVDSKPEKGTAFKISFPK 605 >gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] Length = 621 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + S + H++ +P+ ++ +E L + I + + +I+ Sbjct: 371 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPKFLHVIQDE 425 Query: 57 SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + I + + + + ++ + + Sbjct: 426 TERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSI 485 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + + +++ N+ A P GG +T+ + ++ I S+ G Sbjct: 486 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 545 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + Sbjct: 546 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYIS 605 Query: 213 LE 214 L Sbjct: 606 LP 607 >gi|242277863|ref|YP_002989992.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120757|gb|ACS78453.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 471 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG---------IEDEV 49 +AK + + L ++ L S I H + +P+ I S ++L+E + + + Sbjct: 236 LAKRRRQLVQAQKLSSIGTLSSGIAHQLNNPLNNISTSCQILEERQKGQDELSDRMMNNI 295 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 MQ + L+F R + G V+ + + ++ + + + + I Sbjct: 296 MQETLRARDIVKGLLEFSRESEYSPGPVEINMVMKSAMDLVSSQVPSNISLSMEIPEHII 355 Query: 110 DLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166 + R + +NL + A ++ + + G PE + Sbjct: 356 VHADRRKLQEAFINLLINAVQAIEGNPGSITVTAFMDQENTVIKVNDTGQGM-SPEIMER 414 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + Y V + +++ + E L Sbjct: 415 IFDPFFSTKEVGQGTGLGLYIVYGIIEKHQGSIRTESSPGEGTSFYITLP 464 >gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 845 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++I + L L S + H++ +P+ +I+ EL+ + + + + I + Sbjct: 607 RDITRETEADRLKTELVSTVSHELRTPLSSIYGFTELMLNREIDAIKQQKYLSTIHNETE 666 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + R + + + + + + + Sbjct: 667 RLSNLVTDFLDVQRMQSGGQRYQMAHLDLYSIVDQVIGVYKASNGLHDIQLHLLSVERPA 726 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164 I ++L NL A P GG+V I+V + + +G F Sbjct: 727 IIGDETRIKQLLNNLVNNAIKYSPDGGQVDITVSTDQENATIQITDHGIGIPQYAFAHLF 786 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + E+ + E + L Sbjct: 787 DKFYRVDNSDTRRIGGTGLGLSICKEIVKEHDGVIHVESTVGKGSTFTVALP 838 >gi|254519261|ref|ZP_05131317.1| multi-sensor signal transduction histidine kinase [Clostridium sp. 7_2_43FAA] gi|226913010|gb|EEH98211.1| multi-sensor signal transduction histidine kinase [Clostridium sp. 7_2_43FAA] Length = 568 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 68/220 (30%), Gaps = 16/220 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK--- 65 ++ + + + H++ +P+ +I E L +++ ++ + +I + + Sbjct: 340 ENIRSQFVANVSHELKTPLTSIKGFAETLKFVEDLPTRNKFLDIIDKEAERLTNLINDIL 399 Query: 66 -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 ++ + + ++ + ++ + T E + ++ Sbjct: 400 ILSNIENNHKMKEEEFNPAKVIEDVINMVTPQMNSKQIEINFSSNGTNELNGDRDKFFQM 459 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 +LNL A ++I D + ++ NG + F + + Sbjct: 460 ILNLVENAIKYSNDKTLISIRTYDINDYTYIEVEDNGIGIPKEDLPRIFERFYRVDKSRA 519 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + + + + L K Sbjct: 520 KGGTGLGLAIVKHIARMFNGEIFVKSTLNKGTKFTIKLRK 559 >gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 352 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 65/223 (29%), Gaps = 24/223 (10%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMR 68 + + + + H++ +P+ AI +E L + +E + +I + + + Sbjct: 128 MRSEFVANVSHELRTPLTAIKGFVETLLDGALEDKLICRRFLTIIEGENNRLTRLIDDLL 187 Query: 69 LAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 + + + +++ + + + + Sbjct: 188 TLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLELIFNRDLPPVKADEDLVG 247 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 ++L+NL A GGK+ I V+ ++ S+ G E ++ + Sbjct: 248 QVLINLIDNAIKYTSPGGKIVIRVKRGGDQVFTSITDTGTGI-PQESLPRLFERFYRVDK 306 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + V + + + E L Sbjct: 307 ARSRELGGTGLGLAIVKHIVESHGGEVFVESELGKGSTFGFSL 349 >gi|296502015|ref|YP_003663715.1| sporulation kinase D [Bacillus thuringiensis BMB171] gi|296323067|gb|ADH05995.1| sporulation kinase D [Bacillus thuringiensis BMB171] Length = 498 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494 >gi|229144038|ref|ZP_04272454.1| hypothetical protein bcere0012_12010 [Bacillus cereus BDRD-ST24] gi|228639435|gb|EEK95849.1| hypothetical protein bcere0012_12010 [Bacillus cereus BDRD-ST24] Length = 508 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504 >gi|95931066|ref|ZP_01313793.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132875|gb|EAT14547.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 530 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 64/220 (29%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR 63 S L +L L + I H+I +P+ I + E + + I + Sbjct: 298 RSERLASLGKLVAGIAHEINNPLTGILMFSSMAAETPGISEQMKKDLDTITQETQRCAGI 357 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 ++ + + + + I + I V + D + + + +L + ++ Sbjct: 358 VRGLLDFGRESIPMKTYISVNTILDKTLALVENQTLFQDVEIAREYDDQIPELEGDPNQL 417 Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 A ++ GG++ I + + + G E +I D + Sbjct: 418 EQVFMNIFINAAQAMLAGGQLAIKTWFNDEMVMIRIADTGCGI-SGENLERIFDPFFTTK 476 Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 477 DQQGTGLGLSVSYGIVENHGGDIRVESCPAKGTAFTIRLP 516 >gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467] Length = 609 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + +++ +T + + + ++ Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKREFWVELDTDKVIQV 498 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 L N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 >gi|332971389|gb|EGK10347.1| sensor histidine kinase [Desmospora sp. 8437] Length = 575 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 73/222 (32%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60 + +L + V LL + + H+I +P+ +I +++ E + +I Sbjct: 317 EEEQRRHLEKLSAVGLLAAGLAHEIRNPLTSIRGFIQISAAESPEVKKWESVILPEIDRI 376 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLS 112 LK +L L + + + + + Sbjct: 377 NDLLKQFLHLSESRPVRHTLFNLDRLIDDVLQLLNPRAILMGHELVPRPPASPVIVEADT 436 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++L+NL SL G V++ +++ + + ++ +G+ PE ++I D Sbjct: 437 EQLKQVLINLVQNGLESLKSKGMVSVGWKEAGDRVVVRVRDSGSGI-PPEHMSRIFDPFF 495 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + E+ ++ + + Sbjct: 496 STKGDGTGMGLSICHRIISEHGGQIHVTSQPGRGTTFNIHMP 537 >gi|218288604|ref|ZP_03492881.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218241261|gb|EED08436.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 493 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 71/226 (31%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 +A + S L A+ L + I H+I +P+ A+ ++L+ ++++R Sbjct: 262 LAASRELLARSDKLAAVGQLAAGIAHEIRNPLTALRGFIDLMYQRARSNNRRYLEIMRGE 321 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------ 110 + + + L D+ Q + F++ + + Sbjct: 322 VSRMEAIVSELLRLARPDRPQFQQLDLVDLVQGVVAFMSAQALLHGVEIQYEPRAATVMV 381 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ +NL ++ GG + + V + + G E +I Sbjct: 382 EGDPNQLKQVFINLMRNGIEAMQPGGALRVLVWEDGGWARVQIADQGGGMPPEEL-ARIG 440 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ L E ++ LL Sbjct: 441 EPFFTTKEQGTGLGVMVSKRMVADHGGDLRIESEVGRGTTVTVLLP 486 >gi|332983368|ref|YP_004464809.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332701046|gb|AEE97987.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 535 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 76/233 (32%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + L + L I HD+ +P+ +I S ++L + D + + Sbjct: 289 QQRAKIEMEHERLRSDLLRAISHDLRTPLTSILGSSSTVIENYDVLTDEMRRDFLQDIYD 348 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEK 108 + +I+ + + G ++ + +E+++ + ++ + VS E Sbjct: 349 DAEWLSILVENILSMTRFSEGRIELKKEMEAVEEIVAEAVSRVNKRAKQHEISVSVPKEL 408 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I + + ++L+NL A K+ +SV+ + +F + NG E Sbjct: 409 IMIPVDGILIEQVLINLLDNALKYTLPDSKINVSVKKEDGKVMFQVSDNGPGIPEEELPF 468 Query: 166 QIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + V + Sbjct: 469 IFNRFYTKNLNNTSRPGMGLGLAICKSIVEAHGGEISADNDPAGGAVFRFTIP 521 >gi|324112762|gb|EGC06738.1| hsp90-like protein [Escherichia fergusonii B253] Length = 608 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K L + L L L + + H++ +P+ AI ++++ + + E + Sbjct: 373 RKESQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLN 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L F R V + + + + + ++ + Sbjct: 433 EIDSINKVIQQLLDFSRPRKSQWQQVYLNALIEETLILAQTSGVQARIDFITELAPSLTA 492 Query: 112 SRERA----KILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++LN+ + A + RG + + N+ +++ NG + Sbjct: 493 IVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAITIEDNGCGIDLS-LQRK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGCGATFTLILP 599 >gi|301061389|ref|ZP_07202161.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300444513|gb|EFK08506.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 595 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H+I +PI AI +E L + + + +I ++ + Sbjct: 368 FVSNVSHEIKTPITAIKGFVETLRDGSVKNPADAERFLGIIEKHVDRLEAIIEDLLNLSK 427 Query: 73 Y-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + VD + I V ++ V + + + L Sbjct: 428 IEQTSGKEGLSLVESQMVDIIHNALQICHVAIAEREIEIDVSCAESVTLKVDPTLLEQAL 487 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A GG + ISV + +++ +G ++ + Sbjct: 488 VNLLDNAVKYSDTGGTIHISVTEESGSITIAVRDHGVGINKKHLP-RLFERFYRVDKARS 546 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + + E S L K Sbjct: 547 RQLGGTGLGLAIVKHVVQAHGGHITVESTPGEGSTFSIHLPK 588 >gi|258593742|emb|CBE70083.1| putative Multi-sensor signal transduction histidine kinase precursor [NC10 bacterium 'Dutch sediment'] Length = 557 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSM 58 K + L L + + H++ +P+ AI +EL+ E G +++ ++ + Sbjct: 324 RKTEARLRQADRLATAGQLAAGLAHEVRNPLAAISGCIELIKEAGTARPQLLDIVLREAE 383 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEKID 110 + T + L + + + V +Q Sbjct: 384 RLKLVTGQFLDFAKPTLASQKQCNLVALVAEAVSLLEKSCDSAHPVTFSIQREAEEVMAA 443 Query: 111 LSRER-AKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ + L NL + A ++ ++ N L G E Sbjct: 444 GDPDQLKQALWNLGLNAIQAMQMGGRLSFVIRRHGSENGDNWVGIELTDTGQGIPPEEV- 502 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + R+ + LL+ Sbjct: 503 ERIFDPFYTTKPGGTGLGLTITQKIIDNLGGRIEVISREGGGSTFRVLLK 552 >gi|308272876|emb|CBX29480.1| hypothetical protein N47_J04610 [uncultured Desulfobacterium sp.] Length = 553 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE-LLDEVGIE-------- 46 M + + S L AL + + + H+I +P+ I +E LL E + Sbjct: 310 MNELNAQLVHSDKLAALGKMAAGVAHEINNPLAVIAEKTGWMEDLLTEEEFQNSQNLAEY 369 Query: 47 ----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + L F R + VD + + +E + + + Sbjct: 370 KKSLHKIEEHVERARKVIHGMLGFARRMEPHLEDVDINKVINETISFLESYARTNNISII 429 Query: 103 SWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + ++ LNL A ++ + G + I+ + + +E S+K NG Sbjct: 430 YDSNPDLPIIASDHSQIQQVFLNLLTNAVDAIGKDGTININSRRNDSEISVSVKDNGQGI 489 Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + E + + + L Sbjct: 490 -PKEHQAKIFEPFFTTKKSGKGTGLGLSVSYNIVRNMGGTITLESEEGKGTIFTVKLP 546 >gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 587 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L ++ + +++I + + + Sbjct: 361 EKMRSEFVANVSHELRTPLTSIKGFVETLLDGAMEDREVARRFLEIINVETNRLSRLIND 420 Query: 67 --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 + V+ + + ++ + + + Sbjct: 421 ILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNITVETDIHPDLPVIMANEDL 480 Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L+NL A P G+V +S S S+K G PE +++ + Sbjct: 481 IKQVLINLVDNAIKYTPENGRVVLSATPSGGGLKVSVKDTGIGI-PPESMSRLFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + E + L Sbjct: 540 DKARSRELGGTGLGLAIVKHALEAHGGTIKVESQVGMGSKFTFYLP 585 >gi|116621040|ref|YP_823196.1| signal transduction histidine kinase nitrogen specific NtrB [Candidatus Solibacter usitatus Ellin6076] gi|116224202|gb|ABJ82911.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Solibacter usitatus Ellin6076] Length = 386 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 62/227 (27%), Gaps = 15/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 M S L AL L + + H++ +P+G I S E+L E + EV I Sbjct: 153 MEAQEAVR-RSDRLAALGQLTAGLAHELRNPLGTIKASAEMLNQQLSKENEVAREVAGFI 211 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + L + + ++ Sbjct: 212 STEVDRTNSLVTRFLQFARPLHLRMDREDLTQTLDRAITLAEREAPGIAIYRNYAPEIPP 271 Query: 114 ERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ NL + A + GG VT+ + ++ G+ I Sbjct: 272 FPFDRELLERVFYNLVLNAAQATAAGGAVTVKTRAQGRTVEIAVIDRGSGIDEK-TMKDI 330 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + E+ ++ E + L Sbjct: 331 FNPFFTTKKEGVGLGLAIVSKIVDEHGGKIAVESEPGKGSIFCVSLP 377 >gi|331685746|ref|ZP_08386328.1| sensor protein ZraS [Escherichia coli H299] gi|331077056|gb|EGI48272.1| sensor protein ZraS [Escherichia coli H299] Length = 458 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +V+ + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448 >gi|228971428|ref|ZP_04132054.1| hypothetical protein bthur0003_12080 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978041|ref|ZP_04138420.1| hypothetical protein bthur0002_12450 [Bacillus thuringiensis Bt407] gi|228781702|gb|EEM29901.1| hypothetical protein bthur0002_12450 [Bacillus thuringiensis Bt407] gi|228788295|gb|EEM36248.1| hypothetical protein bthur0003_12080 [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 486 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|78221921|ref|YP_383668.1| Cache sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78193176|gb|ABB30943.1| Cache sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 655 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 56/231 (24%), Gaps = 19/231 (8%) Query: 2 AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52 +N + +L L S + H+I +P+G I ++ E + Sbjct: 420 RQNKEMEASLAQQGKMASLGVLSSGVAHEINNPLGVILGYASYIEGKTSEDDPNYRFIHE 479 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107 I+ S ++ + + D+ V ++ E Sbjct: 480 IKRESKRCKKIVQDLLSYARTPKPALEWTDVNDLLGQIVDFAANHTDMHHVTVVKDFSPE 539 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163 + + +I + + S D + NG + Sbjct: 540 LPRVMVDGDQIRQVAINLILNAGAAMSGEGTLTVKSFLDGEGYVNIVFCDNGAGIPAEDI 599 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + ++ + L Sbjct: 600 -EKIFEPFFTTKAKGTGLGLAITKQIIEMHHGKISILSEVGKGSDVIVKLP 649 >gi|95929932|ref|ZP_01312672.1| GAF sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133901|gb|EAT15560.1| GAF sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 549 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLI 53 K + S L A+ + + + H++ SP+ I + +LL D+++ Sbjct: 312 KMEAQLVQSAKLAAIGEMAAGVAHELNSPMTVIIGTAQLLARELAEQNVSEEIDDIINCG 371 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS- 112 L F R S D + + +I+ I ++ ++ K+ Sbjct: 372 LRCKRIIQNLLTFSRQDQIAVSSTDLNSEVERVLSLIQYQINRNQIRIIADLDPKLPTMT 431 Query: 113 ---RERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L NL + A +L + + +D K I S++ NG Sbjct: 432 ANGPQIQQVLTNLLVNARDALDSLNDEEKVIHVRTHVREKDGKRWAIISVEDNGCGIEEK 491 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I S + + +A + + + S +L Sbjct: 492 DL-QKIFTPFFTSKDATKGTGLGLSVSLGIAQGHNGTIEVKSTPGQGSTFSLVLP 545 >gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 498 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55 + I + + + H++ +P+ I E L + ++E + I Sbjct: 251 LNDKINLLRQIDETRRDFVASVSHELRTPLTIIQGYTEALLDEVVETPEKKEEYLHSILE 310 Query: 56 SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107 ++ + + TG V D+ + + + + + Sbjct: 311 ETLRLRRLVNDLLDLRQIETGQVKLNKQAVDLADLFSAVLQKMEGLFREKQVDLKLALPE 370 Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L+NL A + P GG++ + + S NE + +G E Sbjct: 371 KPVVAEVDPDRIGQVLINLVDNALRATPGGGRILVKLMVSDNEITVKVTDSGPGIPKEEQ 430 Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V L + R+ + S L Sbjct: 431 KLIWHKFYKIDKSRSRSGGGTGLGLAIVKQLVEIHGGRITLDSQPGQGTTFSFTLP 486 >gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1] gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1] Length = 621 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + S + H++ +P+ ++ +E L + I + + +I+ Sbjct: 371 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQFLHVIQDE 425 Query: 57 SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + I + + + + ++ + + Sbjct: 426 TERMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTI 485 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + + + + + +++ N+ A P GG +T+ + ++ I S+ G Sbjct: 486 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 545 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ + + Sbjct: 546 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYIS 605 Query: 213 LE 214 L Sbjct: 606 LP 607 >gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus sp. 7L76] gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141] gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645] Length = 609 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + +++ +T + + + ++ Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 499 FDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 >gi|295401271|ref|ZP_06811243.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus thermoglucosidasius C56-YS93] gi|312111907|ref|YP_003990223.1| signal transduction histidine kinase NtrB [Geobacillus sp. Y4.1MC1] gi|294976678|gb|EFG52284.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus thermoglucosidasius C56-YS93] gi|311217008|gb|ADP75612.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. Y4.1MC1] Length = 744 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K + L +++V L + I H+I +P+ A+ ++LL ED M + S Sbjct: 502 RKELELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSIKEDYSMYFNVIMSE 561 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDL 111 + + + I Q + + + ++ + + Sbjct: 562 LKRIESIITEFLVLAKPQAIQYQQNDVCKIMQDTIDLISAQAMMHNVQIVADFALPIPCI 621 Query: 112 SRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E ++ + ++ K + + S+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGEVTVRIGRLDDSHIRISITDQGCGI-PQDKIKKL 680 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ ++ E L Sbjct: 681 GEPFYTTKERGTGLGLMVSYKIIEEHQGKIDVESEVGVGTTFHITLP 727 >gi|229149635|ref|ZP_04277866.1| hypothetical protein bcere0011_11940 [Bacillus cereus m1550] gi|228633845|gb|EEK90443.1| hypothetical protein bcere0011_11940 [Bacillus cereus m1550] Length = 486 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482 >gi|253698921|ref|YP_003020110.1| histidine kinase [Geobacter sp. M21] gi|251773771|gb|ACT16352.1| histidine kinase [Geobacter sp. M21] Length = 517 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 60/223 (26%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKF 66 + L ++ + + I H+I +P+ I ++ +L + +D +Q+I K Sbjct: 275 RADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPDDGRVQIIGEVLEQVSRLDKT 334 Query: 67 MRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + DI + + ++ + + +I Sbjct: 335 VNDLLFFGKPTVAEPTCTDINAALKKILIFASQHRGGKNIDKRLELAENLPTVYVDPKQI 394 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ S + + G P+ +I Sbjct: 395 QQVFLNLFLNAVQAMQAGGTLTVRSGLAKVEGIDMVQVRVTDTGQGI-PPQILEKIFTPF 453 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ RL D + L Sbjct: 454 FTTKAQGTGLGLAISHRLVEQHGGRLSVVSQDGMGTTFTVELP 496 >gi|288555853|ref|YP_003427788.1| PAS/PAC signal transduction histidine kinase [Bacillus pseudofirmus OF4] gi|288547013|gb|ADC50896.1| PAS/PAC signal transduction histidine kinase [Bacillus pseudofirmus OF4] Length = 605 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 70/215 (32%), Gaps = 11/215 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK--- 65 + +VA L + + H+I +P+ AI L+L ++ + L+ + Sbjct: 388 DKLSVVAQLAAGVAHEIRNPLTAIKGFLQLFQREKEFNEQFLDLVMEELERVESIIYEYL 447 Query: 66 -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 F + + + + V + ++ ++LL Sbjct: 448 TLAKPNHESTFDNLHLQPLVNKVMTLVETQSIMKNVQIDFEYENVPPICGSEKQLKQVLL 507 Query: 121 NLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 NL A ++ G++ I + ++++ ++ NG E+ ++ + + Sbjct: 508 NLIKNAIEAVDVNGEIVIRLLNHAEDQICIQIEDNGCGI-SSERIARLGEPFYSTKEKGT 566 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ L + + +L Sbjct: 567 GLGLMVCYKIIEHHQGILTIHSEEGAGTRIDVILP 601 >gi|229097165|ref|ZP_04228127.1| hypothetical protein bcere0020_24080 [Bacillus cereus Rock3-29] gi|228685976|gb|EEL39892.1| hypothetical protein bcere0020_24080 [Bacillus cereus Rock3-29] Length = 590 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + KN I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGFIISVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISITSEVGVGTTVTIYLPK 567 >gi|83592720|ref|YP_426472.1| sensory histidine kinase AtoS [Rhodospirillum rubrum ATCC 11170] gi|83575634|gb|ABC22185.1| multi-sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 617 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 62/217 (28%), Gaps = 12/217 (5%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + L AL L + I H+I +P+ +I ++ L E E L Sbjct: 391 MRADRLAALGELTAGIAHEIRNPLTSIRGFVQYLMECASPKEWQHYGPLIIRQVDSLNHI 450 Query: 67 -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + E + R+++ GE + + + Sbjct: 451 ITELLAFGRPRAPRIDKVHLDQIAQEMAFLARGKSEARIEMDLEGEVPAIEADGESLKQA 510 Query: 122 LFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 L + ++ K + + + + +G P+ ++ D + Sbjct: 511 LLNLIINAMQAISKDGSVTVAVRRLGDDHVMVKVSDDGIGL-APDYLDKVFDPFFSTKPA 569 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + V++ L Sbjct: 570 GTGLGLAVVHRIVDAHQGVITLDSRLGEGTVVTIRLP 606 >gi|317484438|ref|ZP_07943351.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924298|gb|EFV45471.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 590 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 67/215 (31%), Gaps = 15/215 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59 L A+ L + + H++ +P+ +I E + +++ + + + Sbjct: 361 RREKLAAVGNLAAGVAHELRNPLSSIKGYATYFGGRFPEGSADREAAQVMVKEVERLNRA 420 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWT---GEKIDLSRER 115 + R +GD ++I +D ++ + Sbjct: 421 IGDLIGLSRPTDIRPRMTGMRRLIGDTLRLIGQDAANHKVAIRFDAPEVLPDVAIDPDRM 480 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 +++LNL + ++P GG++ +S+ + ++ G P+ I D + Sbjct: 481 RQVILNLCLNGLEAMPDGGELFLSLHPEPDALRLEIRDTGVGI-APDALPHIFDPYFTTK 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + V + + + V Sbjct: 540 GQGTGLGLATVHKIMEAHGGSISVTSEPGQGAVFR 574 >gi|296329726|ref|ZP_06872211.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674123|ref|YP_003865795.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153224|gb|EFG94088.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412367|gb|ADM37486.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 606 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ G E + S Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + LA +V + L + + ++ S+ + I ++ Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYENDSIYIN 500 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + + ++ ++K G +I + Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + + + K Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSQPEKGTAFKISFPK 605 >gi|168704468|ref|ZP_02736745.1| multi-sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 387 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 + L + L A+ L + + H++ +P+ I +E L + + L Sbjct: 155 LQDQERDLLRAEQLAAVGRLAAGVAHEVRNPLTGIKLLVEGALRSESPASLTSEDLDLIR 214 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKI 109 + + ++ + + D+ ++ + + + V+V + Sbjct: 215 QEIVRMERTVQGLLDFARTPPLECRPHDLRVLVSEAVNRARARAERKPVAVKVELAAAPL 274 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFT 165 +S +R ++L L A + P GG V++ V+ ++ +G PE Sbjct: 275 PVSADRDQMLSLLTNLLFNAVDATPTGGNVSVRVEGTPDGPPTVTVNDSGPGI-APEAMG 333 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + +A ++ L + + L + Sbjct: 334 KLFTPFATTKPTGTGLGLTVARRIARDHGGTLTATNRPEGGAAFTLTLPR 383 >gi|120601284|ref|YP_965684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|120561513|gb|ABM27257.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] Length = 553 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57 N+ L S L A+ L + I H+I +P+ AI LL +++ +++ Sbjct: 256 RTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSLLRLPTLDETARGKVQVIL 315 Query: 58 MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106 + +R + D + +++ + + Sbjct: 316 EESRRLDNILRSILNFARPTTSKAGKADLNGVVRQTLELMAFGFDTRRITSELALAADLP 375 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + L+NL A ++P GG +T+ + + +++ +G E + Sbjct: 376 RVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGEGI-PAEMHER 434 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + I + + ++ ++ L Sbjct: 435 IFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482 >gi|46581554|ref|YP_012362.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450976|gb|AAS97622.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|311235198|gb|ADP88052.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 553 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57 N+ L S L A+ L + I H+I +P+ AI LL +++ +++ Sbjct: 256 RTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSLLRLPTLDETARGKVQVIL 315 Query: 58 MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106 + +R + D + +++ + + Sbjct: 316 EESRRLDNILRSILNFARPTTSKAGKADLNGVVRQTLELMAFGFDTRRITSELALAADLP 375 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + L+NL A ++P GG +T+ + + +++ +G E + Sbjct: 376 RVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGEGI-PAEMHER 434 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + I + + ++ ++ L Sbjct: 435 IFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482 >gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] Length = 545 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + G L + + + +V I +I +NL Sbjct: 384 QQGFKLSMGTVDMKGLLEDIRMVLDNKAGEKEISLQVNALKGVSVIGDPSRLKQIFINLM 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 540 >gi|242281225|ref|YP_002993354.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242124119|gb|ACS81815.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 477 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 73/231 (31%), Gaps = 18/231 (7%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLI 53 M + F S L ++ + S + H+I +P+G I +S ELL + ++++ Sbjct: 243 MRERRDFEKELNQSEKLASIGRMVSGVAHEIRNPLGIIRSSSELLLKRMKESDPVNVKIL 302 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + Y + L D + + +++ Sbjct: 303 GAIHEETKRLSRTVSDFLDYARPRKIAMTALDPADLLDKIYMFLESKCRQSNIELKREYL 362 Query: 108 KIDLSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + NL A ++ + G + +S+ +++ + +G PE Sbjct: 363 PGHQVCGDEDLLYRAFYNLVGNAMQAVEKDGYIAVSINEAEGGISVVVSDSGTG-FTPEI 421 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + V + + +L + L L Sbjct: 422 IEKVKDPFFTTKDNGTGLGLAIVTNIVESHNGKLRIGNNPEGGARLEIFLP 472 >gi|328952482|ref|YP_004369816.1| multi-sensor signal transduction multi-kinase [Desulfobacca acetoxidans DSM 11109] gi|328452806|gb|AEB08635.1| multi-sensor signal transduction multi-kinase [Desulfobacca acetoxidans DSM 11109] Length = 1341 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDE-VMQLI 53 + + L S L AL + + I H+I +P+ I ++L + ++ + Sbjct: 1108 LRERKRMEEELLRSERLAALGKMAAHISHEIKNPLMVIGGFARQVLKDTAQSPPKNLEKL 1167 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------- 103 + F+ Y + G++ ++I + + Sbjct: 1168 HIIVDEVKRLEDFLVEVGSYAKFSEPQKQPGNLNELIRETCQRLEPSLQEKNIDLVLKLD 1227 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++LLN+ ++ GG ++ + + + G+ PE Sbjct: 1228 PDLPEILFDPGHIRQVLLNIAKNGIEAMDAGGTLSFTTGRRAGRILVQVSDTGSGI-PPE 1286 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I S + + ++ + E + L Sbjct: 1287 IQEKIFQPFFSSKPKGSGLGLAISQKIIEAHQGEITIESEPQKGTRVILFLP 1338 >gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] Length = 616 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIR--------- 63 S + H++ +P+ +I + E L E + + + +I+L + + Sbjct: 381 FVSNVSHELRTPLTSIKSYTEALREGAWQDEVIAPQFLNVIQLETDRMMRMIGNLLDLSK 440 Query: 64 ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 + L + + S I + ++ +++ +T +I L ++ Sbjct: 441 IHEGQYKLNLEYIDFKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSREIYLEIDQDRVT 500 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 +++ N+ A P GG + + ++DS + S+K G + Sbjct: 501 QVIDNILNNAIKYSPDGGVIVVKIEDSHSHVHLSIKDQGLGIPQKDIPHLFQRFYRVDKA 560 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ L Sbjct: 561 RSREQGGTGLGLAISKEIIELHGGKIWATSVEGKGSTFGFDLP 603 >gi|261410070|ref|YP_003246311.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261286533|gb|ACX68504.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 459 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 60/233 (25%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + + S + H+I SP+ +I + L + +E Q + Sbjct: 228 MAKGLAQL---EQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQHYLSIIEAE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D + D W DL+ + Sbjct: 285 SRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHTEWNWRSKDLTIDMSLPPT 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL + G +++ V + + + G Sbjct: 345 YVYGDQQLLHQVWTNLITNSIKFTAPEGAISLRVIEHNTQCRIEISDTGIGIPQEHLPHI 404 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + R+ + +L Sbjct: 405 FNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457 >gi|119963101|ref|YP_946860.1| signal transduction histidine kinase domain-containing protein [Arthrobacter aurescens TC1] gi|119949960|gb|ABM08871.1| putative signal transduction histidine kinase domains protein [Arthrobacter aurescens TC1] Length = 541 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 20/221 (9%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII--------- 62 L A + + H+ +P+ +I +EL+ + + +L + Sbjct: 320 LAAKDDFVANVSHEFRTPLTSILGYVELILDDPDALDARARKQLDIVRRNAERLLTLVSD 379 Query: 63 -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKI 118 + +VD + E A + + E S A++ Sbjct: 380 LLVVRSGQIVIQPHAVDVAELVRGSVNSAEPRAAKAGIRLSMDIPEALEAHVDSSRIAQV 439 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173 L NL A P GG V ++ + ++ + G E+ Sbjct: 440 LDNLVSNAIKYSPDGGNVEVAAWEDQDFVFCRVTDTGMGMNEEEQAEAFTKFFRAGGVRN 499 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 STI + + + ++ + + Sbjct: 500 STIPGVGLGLPISKAIVEAHGGTIMVASEPGQGTTFTVKIP 540 >gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] Length = 534 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 29/239 (12%) Query: 6 CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53 +S L +L + I H++ +P+ I ELL + + + + I Sbjct: 293 ELEISYERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGTLGPVNDEQRDRLSRI 352 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105 S ++ + G + + + + + Sbjct: 353 DASVDRLTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRGIDFLADLKKLKITLDV 412 Query: 106 ----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++LLN+ A P GG+++ISV+D + + +++ G Sbjct: 413 PLTLPMISADRSRIQQVLLNVLNNAIKYTPDGGQISISVRDECDHLLIAVRDTGIGIPKE 472 Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + L K Sbjct: 473 DIENIFSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKIWADSEPGKGSTFFISLPK 531 >gi|229084423|ref|ZP_04216703.1| hypothetical protein bcere0022_10630 [Bacillus cereus Rock3-44] gi|228698963|gb|EEL51668.1| hypothetical protein bcere0022_10630 [Bacillus cereus Rock3-44] Length = 522 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 67/223 (30%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + ++LV + H+I +P+ I + LL E +++ + Sbjct: 292 ERQQNEMQKIELVGTFAASTAHEIRNPLTGIKGLVTLLKEKHTQEQDQFYFSVIEQEIER 351 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 K ++ D + + I Q + +Q+ I S Sbjct: 352 INEIVSEFLILGKPTAISEKRYDVRDIIQEVALIIQSEAHLYNIIFTLQLPDHPVHIRCS 411 Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ +++LN+ A ++ G +TI V + + G + Sbjct: 412 KDHMKQVILNITKNAIEAMSSGDMLTIQVTSNNEYAQLHIVDTGKGI-PKHIQKHLFHPF 470 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +++ + ++ + L Sbjct: 471 FTNKDTGTGLGLVICKRIIEMYDGQIVIDSKENQGTTVHIKLP 513 >gi|205372966|ref|ZP_03225774.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4] Length = 495 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + N ++L+ + I H+I +P+ I ++LL+E + + Sbjct: 272 EKKENNAQKLELIGQFSASIAHEIRNPLTGIKGLIQLLNEKYNDKADDMYFSIIYKEINR 331 Query: 63 RLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + D LI + I Q + V + + +S Sbjct: 332 INDIVGEFLMLGKPSGVSLKISDLRDVLIEITPIIQSEANLYNVHYSYEFPTRPLLVKMS 391 Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ ++LLNL ++ GG + I + ++ G+ E ++ D Sbjct: 392 SDQMKQVLLNLSKNGLEAMEEGGLLHIKLSSKGEWIEIKIRDTGSGI-NEENVPKLFDPF 450 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + ++ ++ ++ LL Sbjct: 451 FTSKSEGTGLGLPVCKRIIESINGQISIASKENEWTEVTILLP 493 >gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] Length = 412 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 26/228 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM 67 ++ + + H++ +P+ +IH E L ++ + +++I S + + Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLEDKELVKRFLKIIEEESARMTRLINDL 243 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117 VD + + ++I+ + V + Sbjct: 244 LDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECEDVVVRGNKERLIQ 303 Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 +LLNL A KV + D+ + + ++ G E ++I + Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVLEVEDTGPGI-PKEAQSRIFEKFYR 362 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ R+ E + V+ L K Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLPK 410 >gi|251795375|ref|YP_003010106.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] gi|247543001|gb|ACT00020.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] Length = 606 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 73/226 (32%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQ 51 ++ + S L + L + + H+I +P+ A+ +LL I + Sbjct: 376 KRSEEMLVRSEKLSVIGQLAAGVAHEIRNPLTALKGFTQLLKSKAEGNSFYYDIMTNELD 435 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + K F L + I + + V R + I Sbjct: 436 RINFIVNEFMTLAKPHFSKFSTRRLDHILHAVISILETQAILMNVSIRTEFENCIPSIYC 495 Query: 112 SRER-AKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ +N+ A ++P GG++TIS ++ +++ G E QI Sbjct: 496 DENQLKQVFINIIKNAIEAMPLGGQITISAAMESDHERVRLTIRDEGMGI-PDEIIRQIG 554 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +++ + + + +L Sbjct: 555 QPFITTKEKGTGLGLMISSRIIEQHQGLMNISSVPGEGTTIEIILP 600 >gi|77919740|ref|YP_357555.1| two component signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77545823|gb|ABA89385.1| signal transduction histidine kinase, nitrogen specific, NtrB [Pelobacter carbinolicus DSM 2380] Length = 559 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 70/226 (30%), Gaps = 17/226 (7%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 K + L S L A+ L + + H+I +P+ +I S++LL E + +M ++ Sbjct: 324 KEMEERLKRSDRLAAVGQLAAGLAHEIRNPLASISGSVQLLKENIALGEEDRSLMNIVVK 383 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113 + L+ L + + + + + DKR Sbjct: 384 EADRLNGLLREFLLFARPSPPEKQWFRAEEFVSELANLCSADKRFNNIDIQRHCSPDDEL 443 Query: 114 -----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + L NL + A ++P GG++ + + + G +I Sbjct: 444 LGDRGQLRQALWNLLINAAEAMPDGGRLIFDFLPNPPRLV--VSDTGPGIPEY-LRQKIY 500 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V + + L + L Sbjct: 501 DPFFTTKDHGTGLGLATVHNIVEAHGGTLELQGSQQGGASFVVCLP 546 >gi|218782152|ref|YP_002433470.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763536|gb|ACL06002.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 609 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 80/234 (34%), Gaps = 21/234 (8%) Query: 1 MAKNIC----FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LI 53 M + + L S L A+ L S++ H++ +P+ I N+LELL E + ++ Sbjct: 371 MEQKLNSVKDQLLQSEKLAAMGKLTSQLAHELNNPLFGIMNTLELLKTEIPETSKRRKIL 430 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105 ++ + + ++ ++ + DI ++E+ + + +R Sbjct: 431 DMALSETVRISEMLKKMLSFSKPDQEERQITDINTILEELLLLHERQLQENDVKVVRDLT 490 Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ LN+ A ++ GG TI+ + + L G E Sbjct: 491 EGLEPVMASKNQLRQVFLNVIANARDAMQEGGTFTITSRAQGDFIYIDLADTGVGI-PEE 549 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I D + + + ++ + + L Sbjct: 550 NLSKIFDTFFTTKGSVQGVGLGLSVCYGFIRDHGGDIKVHSEPGEGTTFTVSLP 603 >gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis S2] gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis S2] Length = 639 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 62/225 (27%), Gaps = 25/225 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLK- 65 L + L + + H++ +P+ +I +EL+ + + + +Q+ + + ++ Sbjct: 411 KLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIES 470 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + + + +V Sbjct: 471 MLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVE-DIAIEADKDRI 529 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-- 173 ++L NL A P + +S + G + +I + + Sbjct: 530 TQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKD-MEKIFNRFYQVD 588 Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +K + E +L Sbjct: 589 SSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILP 633 >gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] Length = 545 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +++ + +I S ++ + Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G L + + + +V I +I +NL Sbjct: 384 QQGFRLNMGTVDMKGILEDIHMVLDNKAGEKEISLQVNGLKRVSVIGDPSRLKQIFINLI 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++ + + K + G E +I + Sbjct: 444 NNAIVYTPAGGVVSVELLEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + +L K Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540 >gi|329925071|ref|ZP_08280015.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5] gi|328940190|gb|EGG36522.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5] Length = 459 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + + S + H+I SP+ +I + L + +E Q + Sbjct: 228 MAKGLAQL---EQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQHYLSIIEAE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D + D W+ DL+ + Sbjct: 285 SRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHTEWSWRSKDLTIDMSLPPT 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL + G +++ V + + + G Sbjct: 345 YVYGDQQLLHQVWTNLITNSIKFTVPEGAISLRVIEHNTQCRIEISDTGIGIPPEHLPHI 404 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + R+ + +L Sbjct: 405 FNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457 >gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 607 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 64/231 (27%), Gaps = 25/231 (10%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 L ++ + + H++ +PI +I + E L ++ + +I + Sbjct: 375 EQQKLDSMRREFVANVSHELRTPITSIKSYTETLLEGAMEDQETSKRFLCVIDSEADRMT 434 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + M + + + Q+ V I Sbjct: 435 RLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQIEAQRKHQKLDSYVIGDIPAIS 494 Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 ++R ++++NL + G++T+ V N+ + G P F + Sbjct: 495 ADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYNDIYVKVTDTGIGIPSESLPRVFER 554 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + ++ L + Sbjct: 555 FYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEIGKGTEVTVKLPR 605 >gi|229059542|ref|ZP_04196924.1| hypothetical protein bcere0026_16540 [Bacillus cereus AH603] gi|228719825|gb|EEL71419.1| hypothetical protein bcere0026_16540 [Bacillus cereus AH603] Length = 488 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59 + +++ + L S I HD+ +PI AI ++ + E + Sbjct: 248 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 307 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + + +D E+V + D ++ + ++ Sbjct: 308 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIAVSWDAQK 367 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160 +++ N+ + + + + +K NG Sbjct: 368 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGIGIEEK 427 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ + E L+ L+K Sbjct: 428 ALPYIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 486 >gi|229161523|ref|ZP_04289503.1| hypothetical protein bcere0009_23090 [Bacillus cereus R309803] gi|228621768|gb|EEK78614.1| hypothetical protein bcere0009_23090 [Bacillus cereus R309803] Length = 590 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------D 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNLYQIFKNVVSLINTKAIMTNIQVELYTDSKELIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P G + + I + G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPTGGKISIHIKKINNEGVIIHVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567 >gi|323974203|gb|EGB69335.1| hsp90-like protein [Escherichia coli TW10509] gi|324110915|gb|EGC04907.1| hsp90-like protein [Escherichia fergusonii B253] Length = 458 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448 >gi|218548320|ref|YP_002382111.1| sensory histidine kinase AtoS [Escherichia fergusonii ATCC 35469] gi|218355861|emb|CAQ88476.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia fergusonii ATCC 35469] Length = 608 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 78/228 (34%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K L + L L L + + H++ +P+ AI ++++ + + E + + + Sbjct: 373 RKESQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLN 432 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 K ++ ++ S ++ +IE+ + + + V + I Sbjct: 433 EIDSINKVIQQLLDFSRPRKSQWQQVYLKALIEETLILAQTSGVQARIDFITELDPSLTA 492 Query: 116 --------AKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++LN+ + A + RG + + N+ +++ NG + Sbjct: 493 IVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAITIEDNGCGIDLS-LQGK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + + +L Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGCGATFTLILP 599 >gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 586 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 70/234 (29%), Gaps = 28/234 (11%) Query: 9 LSSMDLVALL----CSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSM 58 +S+M + + + H++ +P+ I E L D+ G D + +I+ + Sbjct: 349 ISAMKKADQIRRDFVANVSHELRTPVTVIKGYAETLLSGDLADDPGRRDRFLGIIQNHAD 408 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + V + ++ V + + Sbjct: 409 RLSDLVRDLLALSELESGELAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMELGSCAPVS 468 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +R ++L+NL A +GG++ + + S++ NG + ++ Sbjct: 469 AMADRGRLDQVLINLLENAIKYSGQGGRIQVEAAEEGEMVRVSVRDNGIGIPEKDLP-RL 527 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + + E V S L + Sbjct: 528 FERFYRVDEARSRERGGTGLGLSIVKHIVMAHGGSVFVESTVGKGSVFSFTLPR 581 >gi|258511933|ref|YP_003185367.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478659|gb|ACV58978.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 492 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 +A + S L A+ L + I H+I +P+ A+ ++L+ ++++R Sbjct: 262 LAASRELLARSDKLAAVGQLAAGIAHEIRNPLTALRGFIDLMYQRARSNNRRYLEIMRGE 321 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------ 110 + + + L D+ Q + F++ + + Sbjct: 322 VSRMEAIVSELLRLARPDRPQFQQLDLVDLVQEVVAFMSAQALLHGVEIQYEPRAASVMV 381 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ +NL ++ GG + + V + + G+ PE +I Sbjct: 382 EGDPNQLKQVFINLMRNGIEAMQPGGALRVLVWEDGGRARVQIADQGSGM-PPEALARIG 440 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ L E ++ LL Sbjct: 441 EPFFTTKEQGTGLGVMVSKRMVADHGGDLRIESEVGRGTTVTVLLP 486 >gi|218551013|ref|YP_002384804.1| sensor protein ZraS [Escherichia fergusonii ATCC 35469] gi|218358554|emb|CAQ91202.1| sensory histidine kinase in two-component regulatory system with ZraR [Escherichia fergusonii ATCC 35469] Length = 458 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+ ++ +VD + Q++ + E Sbjct: 291 VSELLELVKPTHLALKAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL++ A ++ + G ++++ +S S+ +G + I + Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + L Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448 >gi|116748939|ref|YP_845626.1| signal transduction histidine kinase, nitrogen specific, NtrB [Syntrophobacter fumaroxidans MPOB] gi|116698003|gb|ABK17191.1| signal transduction histidine kinase, nitrogen specific, NtrB [Syntrophobacter fumaroxidans MPOB] Length = 952 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 80/237 (33%), Gaps = 24/237 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQL 52 + + L S L AL L S + H++ +P+ ++ EL+ + + +++ Sbjct: 572 LTQRKALEAQVLQSEKLAALGQLISGVAHELNNPLASVVGYSELVQAGQASAKDKKHLEI 631 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107 I+ ++ A +K + +I + ++ + DF + ++ ++ + Sbjct: 632 IKNEALRASAIVKGLLTFARERKPEKQMIQVNEVLERTLGLRLYDFKVRNIQLVMTLDSQ 691 Query: 108 KIDLSRERAK---ILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLAR 159 + + + LN+ A ++ I + + NG+ Sbjct: 692 LPPTHADFFQLQVVFLNIINNAEHAMGENVGDKILTVSSRLMMDGKVIEVEITDNGSGI- 750 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D V + + + E++ ++L E D L Sbjct: 751 PDEMKNRIFDPFVTTKEVGKGTGLGLSVSYGIVQEHQGQILVESNLDKGTAFKVRLP 807 >gi|228996311|ref|ZP_04155955.1| hypothetical protein bmyco0003_9010 [Bacillus mycoides Rock3-17] gi|228763415|gb|EEM12318.1| hypothetical protein bmyco0003_9010 [Bacillus mycoides Rock3-17] Length = 328 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 19/221 (8%), Positives = 63/221 (28%), Gaps = 11/221 (4%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61 + ++ V L + I H++ +P+ I ++LL + ++ + Sbjct: 99 ELLKKSDTLKAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEAGEDKEYFRLIFSEIRGIET 158 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------DLSRE 114 I +F+ +A + ++ V+ + T + Sbjct: 159 ILQEFLSIAKPNVVVFEPKNLCTILDNVVALISTQAIIKNIRITLNMDFENLLVECCEIQ 218 Query: 115 RAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++ N+ + ++ + + E + + G PE+ ++ + Sbjct: 219 LKQVFFNILQNSIEAIQNGQEITINVKKHNSTEVMICISDKGVGI-PPERIKRLGEPFYS 277 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 278 TKEKGTGVGLMISYQIIESHGGKINIRSQVGKGTTVIVFLP 318 >gi|312112640|ref|YP_003990956.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311217741|gb|ADP76345.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 550 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56 + + S L A+ + + I H++ +P+ AI + +LL + S Sbjct: 312 RRIEAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRTAAKDDRSYKLLYDIYS 371 Query: 57 SMSAI-----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107 L F R + + +I D I + + Sbjct: 372 CGRRCKTIIQNLLTFSRQDEYMFEDCSVNEAVEQVLGLIGDQIRKQNIIIRKKLDNSLEL 431 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV--------QDSKNENIFSLKINGNLAR 159 ++ +I+LNL + A +L + ++ K + +++ NG Sbjct: 432 VEGNIQQIGQIVLNLLINAKDALEEVDVPEKVISIETKSVAEEEKKWVLLTIQDNGKGIE 491 Query: 160 FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + + L Sbjct: 492 EQYLQEIFNPFFTTKRPGKGTGLGLSVSLGIAQAHGGTIEVASKPGKGSTFMLKLP 547 >gi|143631|gb|AAA22800.1| SpoIIJ protein (gtg start codon) [Bacillus subtilis] Length = 606 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ G E + S Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + LA +V + L + + ++ S+ + I ++ Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 500 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + + ++ ++K G +I + Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + + + K Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 605 >gi|16078463|ref|NP_389282.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221309268|ref|ZP_03591115.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221313595|ref|ZP_03595400.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318517|ref|ZP_03599811.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322791|ref|ZP_03604085.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|3041695|sp|P16497|KINA_BACSU RecName: Full=Sporulation kinase A; AltName: Full=Stage II sporulation protein F; AltName: Full=Stage II sporulation protein J gi|143333|gb|AAA22664.1| protein kinase kinA [Bacillus subtilis] gi|2632220|emb|CAA10862.1| KinA protein [Bacillus subtilis] gi|2633770|emb|CAB13272.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 606 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ G E + S Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + LA +V + L + + ++ S+ + I ++ Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 500 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + + ++ ++K G +I + Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + + + K Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 605 >gi|295694964|ref|YP_003588202.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus tusciae DSM 2912] gi|295410566|gb|ADG05058.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus tusciae DSM 2912] Length = 752 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54 ++ + S L V L + + H+I +P+ A+ ++LL + + ++ + Sbjct: 497 KRSEELMIKSEKLSVVGQLAAGVAHEIRNPLTALKGFVQLLQSNVHTKDEYFNIMLSELD 556 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KID 110 + L + D + + + ++ + + + Sbjct: 557 RIELIINELLILAKPVDVQFQFHDLKVLIETVVALLRTQAILSNVQIATDCDPALPAVLC 616 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L+NL A ++PRGG++ + Q+ + + G + ++ + Sbjct: 617 DENRLKQVLVNLLKNAIEAMPRGGQIVVQARQEDDRTILIRVIDEGMGI-PEDSLPRLGE 675 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ E + LL Sbjct: 676 PFFTTKEKGVGLGLTMSYQIIESHGGQMHFESEVGAGTTVEILLP 720 >gi|229132719|ref|ZP_04261565.1| hypothetical protein bcere0014_16490 [Bacillus cereus BDRD-ST196] gi|228650729|gb|EEL06718.1| hypothetical protein bcere0014_16490 [Bacillus cereus BDRD-ST196] Length = 483 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59 + +++ + L S I HD+ +PI AI ++ + E + Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYY 302 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + + +D E+V + D ++ + ++ Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIAVRWDAQK 362 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160 +++ N+ + + + + +K NG Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ + E L+ L+K Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481 >gi|317121133|ref|YP_004101136.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] gi|315591113|gb|ADU50409.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] Length = 969 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSS 57 + S L A+ L + H+I +P+ AI ++L+ G M ++ Sbjct: 730 RELEQRARRSERLAAVGQLAAGAAHEIRNPLTAIKGFIQLIGRKLEGEAAGYMDIVLQEI 789 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWT-----GEKI 109 + + L + +G + + V + Sbjct: 790 DRIEGIVNDLLLLARPPKPRLRPVDVGGLLARLVEMIRLDEAARGCTVELAVAGPLPPVV 849 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ LNL ++P GG + + + + ++ G PE +I Sbjct: 850 ADEAQLRQVFLNLVRNGLDAMPAGGVLRVRALYDRATDTVQVEVEDRGPGI-PPEHLNRI 908 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + + + +L Sbjct: 909 FDPFFSTKEGGTGLGLAVSYGIVRNHGGHIDVDSEPGCGTRMRVVLP 955 >gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] Length = 639 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 N L ++ + L + + H++ +P+ +I +EL+ + + + +Q+ + Sbjct: 404 NELKELDNLK--SELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNI 461 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108 + ++ M Y V+ + D+ + + +++ Sbjct: 462 VRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLQPIATEKNIKLKKEIEEIA 521 Query: 109 IDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ID ++R ++L NL A P + IS + +G + ++ Sbjct: 522 IDADKDRITQVLTNLIENAIKFSPANESIMISADLEDEHVHLRVTDHGAGIPKKD-MEKV 580 Query: 168 VDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +K + E +L Sbjct: 581 FNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILP 633 >gi|90578555|ref|ZP_01234365.1| putative sensor histidine kinase [Vibrio angustum S14] gi|90439388|gb|EAS64569.1| putative sensor histidine kinase [Vibrio angustum S14] Length = 664 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53 + + + S L AL L + I H+I +P+G I ++EL+ + E + I Sbjct: 415 LNQARSKLVVSEKLAALGELTAGIAHEINNPLGVILGNVELIQFELGDNTVQVQEELDAI 474 Query: 54 RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + +++ V+++ Sbjct: 475 HAQIDRIRNITRSLLQYSRQGGVQNEVTWHHLNQIVEESLTLVCSGTKKLSITFVVELNA 534 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLA 158 + ++L+NL M ++ G++ I +D I + +G Sbjct: 535 KCSVEVNRHQLLQVLVNLQMNGIHAMDDKGRLIIRTEDWIDEQGLSIGAIVRVIDHGCGI 594 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I D + + L + + E S L Sbjct: 595 -AKENLERIFDPFFTTRRSGTGLGLSVSQSLIEDIGGEITVESEVGQGTTFSVYL 648 >gi|156740269|ref|YP_001430398.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156231597|gb|ABU56380.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 407 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 71/246 (28%), Gaps = 33/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L AL + + + H++ +P+ I + ELL + ++ I S Sbjct: 152 LRAMQAQLVQSSKLAALGEIVAGVAHELNNPLAIILGNAELLSPQRTPDDQRSVEQIIES 211 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEK 108 + A ++ + + D+ + + D V Sbjct: 212 AKRARRVVQSLATFARRGPIIKEWTAPTDLVERVIDLKRAALHAAGIALEVVCQPDLPML 271 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS------------------VQDSKNENIFS 150 + + LLNL + A +L + V++ + F Sbjct: 272 WIDVPQMQQALLNLLINAEQALSGAPAPWMRLSVSRGPAEPPPLLPARAVENHGSFVRFD 331 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + NG ++ + V + + + ++ ++L + Sbjct: 332 VADNGPGIPAH-IIERLFEPFVTTRPPGKGSGLGLAIAYGIVTQHSGQVLVASQPNQGTT 390 Query: 209 LSALLE 214 + L Sbjct: 391 VRIALP 396 >gi|90422347|ref|YP_530717.1| sensory histidine kinase AtoS [Rhodopseudomonas palustris BisB18] gi|90104361|gb|ABD86398.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 613 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 68/223 (30%), Gaps = 13/223 (5%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + L AL L + + H+I +P+ +I ++ L+ E + Sbjct: 384 RTQVMRADRLAALGELMAGVAHEIRNPLTSIRGFVQFLEACDDVREWRRYSPEIIRQVDS 443 Query: 63 RLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + R V + ++ ++ V R+ + I+ E Sbjct: 444 LNRIITELLEFGRPRPPAIRPVQLNDLVHEVTRLAGHKANVQLRLALCAELPLIEADGEA 503 Query: 116 -AKILLNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + LLNL + A + ++ V+ ++ +G + +I D Sbjct: 504 LKQALLNLLINAMQAVETLGTVRIETHVEADGATVAVAISDDGAGILPEDL-EKIFDPFF 562 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + + V + L + Sbjct: 563 STKPQGTGLGLAMVHRIVDAHHGTVAMTSRPGAGTVATMRLPR 605 >gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000] Length = 609 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + +++ +T + + + ++ Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 L N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 >gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470] gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470] Length = 609 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + +++ +T + + + ++ Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 L N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 >gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248] gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248] Length = 609 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + +++ +T + + + ++ Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 L N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 >gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104] gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322] gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8] gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5] gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96] gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704] gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1] gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG] gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104] gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322] gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8] gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5] gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96] gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704] gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1] gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG] gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137] gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017] gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027] gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244] gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012] gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031] gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043] gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312] gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302] gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341] gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342] gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346] gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630] gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62] gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF] Length = 609 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E E+ ++ L R Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + G T + + + D ++ + + +++ +T + + + ++ Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 L N+ A P GG +T + ++ N +FS+ G + F + + Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 >gi|295400670|ref|ZP_06810647.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294977251|gb|EFG52852.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 549 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56 + + S L A+ + + I H++ +P+ AI + +LL + S Sbjct: 311 RRIEAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRTAAKDDRSYKLLYDIYS 370 Query: 57 SMSAI-----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107 L F R + + +I D I + + Sbjct: 371 CGRRCKTIIQNLLTFSRQDEYMFEDCSVNEAVEQVLGLIGDQIRKQNIIIQKKLDNSLEL 430 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV--------QDSKNENIFSLKINGNLAR 159 ++ +I+LNL + A +L + + ++ K + +++ NG Sbjct: 431 VEGNIQQIGQIVLNLLINAKDALEEVDVLEKVISIETKSVAEEEKKWVLLTIQDNGKGIE 490 Query: 160 FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + + L Sbjct: 491 EQYLQEIFNPFFTTKRPGKGTGLGLSVSLGIAQAHGGTIEVASKPGKGSTFMLKLP 546 >gi|229103244|ref|ZP_04233927.1| hypothetical protein bcere0019_23940 [Bacillus cereus Rock3-28] gi|228680083|gb|EEL34277.1| hypothetical protein bcere0019_23940 [Bacillus cereus Rock3-28] Length = 590 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + KN I ++ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGVIINVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|322421181|ref|YP_004200404.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127568|gb|ADW15128.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 543 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 16/229 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRL 55 + + S L +L L + I H+I +P+ I L+ D V+ + + Sbjct: 287 TRMQAQLIRSEKLASLGELVAGIAHEINNPLTGILVFSSLIQSNPKLDPVLKNDIETVLR 346 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + +K + S L I + + Q Sbjct: 347 ETKRCAGIVKGLLEFARCAPPQKSPCSLNGISDAALELVRHQTLFQDVTIVRNYSGKVPR 406 Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165 S + ++L+N+F+ A ++ G V + + + + NG + Sbjct: 407 LLLDSNQIEQVLVNMFVNAGQAVRGEGVVVVMTGVDPDEGQAFIRISDNGCGIPEANQDK 466 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ R+ + + + LL Sbjct: 467 IFDPFFTTKSNKGTGLGLSVSYGIVQEHGGRIDVQSEEGSGTTFTILLP 515 >gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359] gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359] Length = 412 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 26/228 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67 ++ + + H++ +P+ +IH E L E +E+ +++I S + + Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTHLINDL 243 Query: 68 RLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK 117 L + D I IA + V++ E + + Sbjct: 244 LDLEKMEESSVEFEMKELDLCEVVDYVYRIVQPIAEENEVELEIDCENVTVKGNKERLIQ 303 Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 +LLNL A KV + D+ + + ++ G E ++I + Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWAVIEVEDTGPGI-PKEAQSRIFEKFFR 362 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + ++ E ++ L K Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDRHGGKIEVESEVGQGTLMRVYLPK 410 >gi|294499045|ref|YP_003562745.1| signal transduction histidine kinase with CheB and CheR activity [Bacillus megaterium QM B1551] gi|294348982|gb|ADE69311.1| signal transduction histidine kinase with CheB and CheR activity [Bacillus megaterium QM B1551] Length = 1186 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 18/229 (7%), Positives = 69/229 (30%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K L + ++++ L + I H+I +P+ ++ L+L+ + + + + + Sbjct: 959 RKQSEMMLKNSEMLSALGQLAAGIAHEIRNPLTSLKGFLQLMMQEETYKK--EYMDVMMS 1016 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT---GE 107 + + I + + + Sbjct: 1017 EFNRLELIISELLILAKPEVVKYENKQINLILQDVCTLLHTQAILKNITISTDFEEKLPV 1076 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165 + ++ ++ +N+ + ++ G + + + N+ + + G ++ T Sbjct: 1077 VHCIEKDMKQVFINMVKNSIEAMDDPGSILVVSKFDPDTNQVVVQVIDEGKGM-PKDRLT 1135 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + +K + + + + L Sbjct: 1136 RITEPFYTTKEKGTGLGLMVSHKIISNHKGSISYDSEEGKGTTVEIRLP 1184 >gi|197116682|ref|YP_002137109.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197086042|gb|ACH37313.1| sensor histidine kinase, HAMP domain-containing, nonconserved putative heme-binding site [Geobacter bemidjiensis Bem] Length = 494 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKF 66 + L ++ + + I H+I +P+ I ++ +L + ED +Q+I K Sbjct: 252 RADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRIQIIGEVLEQISRLDKT 311 Query: 67 MRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + DI + + ++ + + + +I Sbjct: 312 VNDLLFFGKPTVAEPTCTDINSALKKILVFASQHRGGKNIEKRLELSENLPTVYVDPKQI 371 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ S + + G P+ +I Sbjct: 372 QQVFLNLFLNAVQAMQAGGTLTVKSGLAKVEGVDMVQVRVTDTGQGI-PPQILEKIFTPF 430 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ RL D + L Sbjct: 431 FTTKAQGTGLGLAISHRLIEQHGGRLSVVSQDGMGTTFTVELP 473 >gi|321315157|ref|YP_004207444.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis BSn5] gi|320021431|gb|ADV96417.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus subtilis BSn5] Length = 606 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ G E + S Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + LA +V + L + + ++ S+ + I ++ Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 500 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + + ++ ++K G +I + Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + + + K Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 605 >gi|291483934|dbj|BAI85009.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 609 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + L S L L + I H+I +P+ AI L+L+ G E + S Sbjct: 380 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 439 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +I + + LA +V + L + + ++ S+ + I ++ Sbjct: 440 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 499 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++ A S+P GG V I + + ++ ++K G +I + Sbjct: 500 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 558 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + + + K Sbjct: 559 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 604 >gi|238920097|ref|YP_002933612.1| sensory histidine kinase AtoS [Edwardsiella ictaluri 93-146] gi|238869666|gb|ACR69377.1| signal transduction histidine-protein kinase AtoS [Edwardsiella ictaluri 93-146] Length = 590 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K L + L L L + + H++ +P+ AI ++++ + + Sbjct: 355 RKEAQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTALPAHQEYLSVVLK 414 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKID 110 I + L F R V + + + +++ + + Sbjct: 415 EIDSINKVIQQLLDFSRPRQSQWQRVSLNVLIEEALILVQTSGVQARITFHCALDSTLPA 474 Query: 111 LSRER---AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +R ++LLN+ + A ++ + Q + + ++ +G + Sbjct: 475 IVADRELLKQVLLNILINAVQAISARGEIRIRTWQPTPAQQAVTITDSGCGIDIA-LQKK 533 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + + +L Sbjct: 534 IFDPFFTTKAAGTGLGLALSQRIINAHRGDIDVASTPGGGTAFTLMLP 581 >gi|303248906|ref|ZP_07335154.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302489705|gb|EFL49640.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 480 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 21/231 (9%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------- 51 N L + + AL + + H++ +P+ I + + L E E Sbjct: 235 NQEDLLQARKMAALGTFTAGVAHELNNPLNNIALTADALREDYAETLDADGRELVDDITG 294 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108 ++ L F R +D + ++++ I + + Sbjct: 295 QADRAADIVRNLLDFSRTERPPLVLLDPAEVVRSSLNLVKNQIQAAGVCLETEYAPRLPA 354 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFT 165 R ++L+N+ A + P GG V + ++ G Sbjct: 355 IRGDMRSLQQVLVNIVQNAAQATPPGGVVRVETCLGRDAGHIRINVADTGPGIAPS-VRE 413 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + L + R+ E + V + L Sbjct: 414 HIFEPFFTTKGVGKGTGLGLAVAYSLVKRHGGRIEVECPEGGGAVFTVRLP 464 >gi|328952443|ref|YP_004369777.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452767|gb|AEB08596.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 73/228 (32%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR 54 + ++ L S A+ + + H+I +P+ I L+ + +++I Sbjct: 385 LRQSHERLLRSERFAAVGEAAAYVSHEIKNPLMVIGGFARQLERNPEVSQTASSKLRIII 444 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTG 106 L +R L ++ Q + + + + Sbjct: 445 DEVRRLENFLGELRDFTRPAPPFKQEADLNELVQDVAAMMGEATQEMGVKIETKLANTLP 504 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++L+NL A + GG +TIS +++ S+ G + PE Q Sbjct: 505 LVNFDANQMKQVLINLVKNALEATDSGGVITISTSAWEDQVRLSVTDTGKGIQ-PEIMPQ 563 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ + E D + L Sbjct: 564 IFNPFFTTKKTGTGLGLAVINKIIEDHNGAITVESSKDRGTTFTISLP 611 >gi|255283685|ref|ZP_05348240.1| phosphate regulon sensor protein [Bryantella formatexigens DSM 14469] gi|255265750|gb|EET58955.1| phosphate regulon sensor protein [Bryantella formatexigens DSM 14469] Length = 476 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK++ L L S + H++ +P+ I + +E++ + +E + ++ Sbjct: 244 MAKSLK---EQEALRKRLTSDVTHELRTPVANISSYMEMMADGVMEPTT-ERMQSCYEEL 299 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIE-------------QVIEDFIAVDKRVQVSWTGE 107 + D + L E + K Sbjct: 300 QRLSGLICNLERLRQVEDENLVLDKTEVDLLELSQNVLGNFESQLLEKHLKGQVSGDAAV 359 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 ++L NL A GG + + ++D+KN I ++ NG + F Sbjct: 360 IFADKGRIQQVLTNLVSNAIKYSNDGGMIHVVIEDTKNSGIIHVEDNGIGIPQEDLGRIF 419 Query: 165 TQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + I V + + + E + + +L K Sbjct: 420 ERFYRTDKSRNRKTGGAGIGLTIVRTIVQAHGGNISVESKEGKGSCFTIILPK 472 >gi|300087268|ref|YP_003757790.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527001|gb|ADJ25469.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 568 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K + + L ++ L + I H+I +P+ I ELL E + + + + Sbjct: 327 RKMQEQLMVTNRLASVGELAAGIAHEINNPLTGILGFSELLMENNLPENLRADVETIHSE 386 Query: 60 AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDL 111 A L F R +D + + + + + +V + + Sbjct: 387 ANRAAGIIKNLLVFARQHHQVREELDVNEVVERVLTLRAYEANLNNIQVVRHLAPDIPMI 446 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS--------VQDSKNENIFSLKINGNLARFPEK 163 + ++ + + K +G P+ Sbjct: 447 IGDHFQLQQVFLNLVINAEYFMLKAHNKGTLTVATSYDRETERVRLVFTDDGPGV-APDI 505 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + ++ + E L Sbjct: 506 QARLFDPFFTTKDVGQGTGLGLSISHGVIKQHGGTIRVESQPGQGASFIIELP 558 >gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 585 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +PI +I E L + + + +I S ++ + Sbjct: 362 FVANVSHELKTPITSIKGFAETLLDGAMKDEQTLEYFLSIIWKESERLQTLVQDLLDLSK 421 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 D L + + Q + +D + + + +I +N Sbjct: 422 IEQQGFRLHLETVDLADLLREIAVMFQQKSEEKGIDFYLHAPKSVYMEGDANRIKQIFIN 481 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ST 175 L A P+GGKV + +++ + E + +K G E +I + Sbjct: 482 LITNALTYTPKGGKVELMIEEKEKEILVHVKDTGIGIDEQEIP-RIFERFYRVDKARGRN 540 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + K Sbjct: 541 SGGTGLGLAIVKHLVEAHHGHITVKSTVGKGTTFTVHFPK 580 >gi|24379906|ref|NP_721861.1| putative histidine kinase CovS; VicK-like protein [Streptococcus mutans UA159] gi|24377885|gb|AAN59167.1|AE014984_2 putative histidine kinase CovS; VicK-like protein [Streptococcus mutans UA159] Length = 450 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 25/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + + V + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALTESVAPSFIKVSLDETNRMMRMITDLLSLSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERA 116 + + L I D + + + + Sbjct: 270 IDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMT 329 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ N+ A P GGKVTI++Q + + I S+ G + F + + Sbjct: 330 QVIDNILNNAIKYSPDGGKVTITMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKA 389 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432 >gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 639 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 66/234 (28%), Gaps = 27/234 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 N L ++ + L + + H++ +P+ +I +EL+ + + + +Q+ + Sbjct: 404 NELKELDNLK--SELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNI 461 Query: 58 MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ + + + + + + + + +V Sbjct: 462 VRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLKPLATEKNIKLNREVE-EI 520 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L NL A P + IS + +G + + Sbjct: 521 TIEADKDRITQVLTNLIENAIKFSPANESIMISGVLEDEHVHLKVTDHGAGIPKKD-MEK 579 Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + +K + E LL Sbjct: 580 VFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHILLP 633 >gi|134299174|ref|YP_001112670.1| sensory histidine kinase AtoS [Desulfotomaculum reducens MI-1] gi|134051874|gb|ABO49845.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 614 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 65/226 (28%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57 M L AL L + + H+I +P+ +I ++ L + + I Sbjct: 388 MRLEEQMRRQ-ERLAALGKLVTGVAHEIKNPLTSISGYIQFWLKSKSPTTKSLNTIYREV 446 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------ID 110 + + T +V S + L + + +F + +T Sbjct: 447 RRLDSIVNKLLFFSRPTHAVMSKVSLNEFVDRVLNFFKETHADNICFTICCEENLPKVYI 506 Query: 111 LSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+N+ ++P V S ++ G E +I Sbjct: 507 DPDQVEQVLMNIIYNGVQAMPEGGEISVETGSSKSDTMIYVEIRDTGFGI-ENELLEKIF 565 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + R+ + ++ L Sbjct: 566 DPFFTTRAKGTGLGLTIADEIIRSHGGRIEIKSQVGVGTIVRVLFP 611 >gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10] Length = 618 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ +E L + I + +++ + + I + + Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETSRMIRMINDLLSLS 438 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112 V + I + V + Sbjct: 439 RMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 498 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + +++ N+ A P GG +T+ + S+ I S+ G + F + Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 558 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + L Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605 >gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 418 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ AI +E L++ +E E +Q+I + I ++ + Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGALEDRETAQEFLQIIASETERLIHLVEDLLKLSR 256 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER---AKILL 120 R F V+ + +I V +V + + ++ + Sbjct: 257 LENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQVFV 316 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 NL A P G S ++ G Sbjct: 317 NLIDNALKYTPVGRVRIRGEYQSG-WVRIEVEDTGIGIPQDCLPRVFERFFRVDRARSRA 375 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + ++ E L Sbjct: 376 SGGTGLGLSIVKHIVELHGGKVGVESELGKGSRFWVYLP 414 >gi|194014588|ref|ZP_03053205.1| sporulation kinase A (Stage II sporulation protein J) [Bacillus pumilus ATCC 7061] gi|194013614|gb|EDW23179.1| sporulation kinase A (Stage II sporulation protein J) [Bacillus pumilus ATCC 7061] Length = 609 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 78/225 (34%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53 + L S L L + I H+I +P+ AI L+L+ + E +L Sbjct: 384 KQTEELMLRSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLIKPKTKDRDQYFEIVFSELS 443 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKI 109 R+ + + + + ++D + ++ ++E ++ + + Sbjct: 444 RIEIILSELLMLAKPQQTASMQTLDLKKIISEVTALLETQANLNGILMNTSEIEEDLLMN 503 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL A S+P GGKV I+ + ++ +++ G +I + Sbjct: 504 GDQNQLKQVFINLIKNAVESMPDGGKVDITAKAERDGIHVTIRDEGVGIPES-VMKRIGE 562 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + V + Sbjct: 563 PFLTTKEKGTGLGLMVTFNILENHNGTIRVDSHPEKGTVFHIMFP 607 >gi|304406471|ref|ZP_07388127.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304344529|gb|EFM10367.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 624 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 65/224 (29%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQ 51 KN ++S L L + I H+I +P+ ++ L+L+ I + Sbjct: 357 KKNEELLINSEKLYVAGQLAAGIAHEIRNPLTSLKGFLQLISTGRSNGRNYFDIMKSELN 416 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKID 110 I ++ K + L + + + V+ Sbjct: 417 RIESIVSELLMLSKPQVYELTHHDMRQVLNDTVMLLEAQASLHNTEIVVETDPAPLWTFG 476 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++ +N+ A ++ GGK+ I+ + + + G E+ ++ Sbjct: 477 VGNQIKQVFINVIKNAIEAMEDGGKIVITSRLEDGNVVTRIIDQGPGI-PKEQLAKMGQP 535 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+ Sbjct: 536 FYTTKDRGTGLGLMVTFKIVDNHQGRIQAHSEMGEGATFVISFP 579 >gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 597 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 61/241 (25%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + + H++ +P+ AI +LL + ++ + R S+ Sbjct: 195 LRKANARLEESSRLKSEFLANMSHELRTPMNAITGFAQLLADTSLDTTQQEYCRTIRQSS 254 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + E IA+ R Sbjct: 255 ATLLALINDILDLAKIEAGRLELEIVAFDLDELLESVAAMFSLSIREKGIAIQVRRDQGL 314 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKINGNL 157 + S ++L NL A + F ++ +G Sbjct: 315 PRAYLGDSHRLRQVLTNLVGNAVKFTESGGVELLVESVAPPEAARQEQWLRFVVRDSGIG 374 Query: 158 ARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 DG+ + L R+ E ++ S Sbjct: 375 IPPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGRIEVESLEGQGSCFSFT 434 Query: 213 L 213 + Sbjct: 435 I 435 >gi|116748299|ref|YP_844986.1| signal transduction histidine kinase, nitrogen specific, NtrB [Syntrophobacter fumaroxidans MPOB] gi|116697363|gb|ABK16551.1| signal transduction histidine kinase, nitrogen specific, NtrB [Syntrophobacter fumaroxidans MPOB] Length = 490 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 68/223 (30%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 S L AL + + + H+I +P+G I ++ ELL++ ++ + + + + Sbjct: 255 QSERLAALGEMIAGVSHEIRNPLGIIRSTAELLNDRIEDERQKRFSSIIVEESTRLNDIL 314 Query: 68 RLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + IE+ + +F ++ V+ + L + + Sbjct: 315 TEFLDFARPKAIRPAQCRIEEILERNLKVLEAEFQRLNVTVERDYRTGAYSLEADCDLLF 374 Query: 120 LNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLARFPEKFTQIVDGN 171 + +L + + ++ + +K G+ + +I + Sbjct: 375 RAFVNLLANALQAMPQGGMLQVRTEVLNGKGGPRQVEVQIKDTGHGI-PSDVRKKIFNPF 433 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + L Sbjct: 434 FTTREKGTGLGLAIVQNIVDNHNGDIEVVSREGEGTAIIIRLP 476 >gi|290580114|ref|YP_003484506.1| putative histidine kinase [Streptococcus mutans NN2025] gi|254997013|dbj|BAH87614.1| putative histidine kinase [Streptococcus mutans NN2025] Length = 450 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 25/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + + V + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALTESVAPSFIKVSLDETNRMMRMITDLLSLSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERA 116 + + L I D + + + + Sbjct: 270 IDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMT 329 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ N+ A P GGKVT+++Q + + I S+ G + F + + Sbjct: 330 QVIDNILNNAIKYSPDGGKVTVTMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKA 389 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432 >gi|94968417|ref|YP_590465.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Koribacter versatilis Ellin345] gi|94550467|gb|ABF40391.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Koribacter versatilis Ellin345] Length = 550 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 72/209 (34%), Gaps = 12/209 (5%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRL-------KFMRL 69 + + I H+I +P+ +I S ++L + +E L + + + + R Sbjct: 321 MAAGIAHEIRNPLTSIAGSTKMLASMSDLNEEQQTLANIVTRESDRLNSIITDFLFYARD 380 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVA 126 +D + L D +++ ++ ++ + +K + ++ NL A Sbjct: 381 KKFELREIDVIPVLNDTLVLLQHRPGMNVAIERRFEADKALCMADGDKLKQVFWNLSDNA 440 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P GG +T++V+ G P+ +I + + V Sbjct: 441 CRAMPDGGTLTVTVRPDHEVWRVHFGDTGPGMTGPQL-EKIFEPFQTEFYGGTGLGLAIV 499 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ ++ L++ Sbjct: 500 YQIVQGHEGKISVRSAPGRGTEFMLQLKR 528 >gi|14600272|gb|AAK71320.1|AF393849_2 sensor protein CovS [Streptococcus mutans] Length = 450 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 25/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + + V + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALTESVAPSFIKVSLDETNRMMRMITDLLSLSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERA 116 + + L I D + + + + Sbjct: 270 IDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMT 329 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ N+ A P GGKVT+++Q + + I S+ G + F + + Sbjct: 330 QVIDNILNNAIKYSPDGGKVTVTMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKA 389 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432 >gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 464 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A+ + S+ + + + H++ +P+ I E++ + ++++ Sbjct: 217 LAETLNKMAESLGEVDEQRKEFLANVSHELRTPLSYIRGYTEMMQDKALDEKTRDQYYQI 276 Query: 57 SMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 RL+ + V S + + ++ A + Sbjct: 277 IERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAKGVSIITD 336 Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + +I + +++ NL A P + +S + + I S++ G P Sbjct: 337 FDPSQIVLGDNDRLEQVIGNLLDNALRYTPASKHIYLSTKTDGEQTICSIRDEGEGI-PP 395 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + E + + L Sbjct: 396 EHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLGQGTTVLITLP 454 >gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 576 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 62/226 (27%), Gaps = 22/226 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 L + + + H++ +P+ +I +E L + G+ + +I + + Sbjct: 349 EKLRSEFLANVSHELRTPLTSIKGFVETLLEGAYKDPGLAKRFLSIIDAEAGRLYRLINN 408 Query: 67 MR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + E +++ + Sbjct: 409 LMDLSKIETNQLKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKADPDW 468 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 ++ +NL A GG+V I + + F + G + F + + Sbjct: 469 LRQVFINLLDNAIKYTQSGGRVWIEAEPKGDVVEFRVCDTGIGIPEEDLPRVFERFYRVD 528 Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + E + L++ Sbjct: 529 KARSPEMGGSGLGLAIVKHIVRAFGGDIRVESRVNQGSKFIFTLKR 574 >gi|154244983|ref|YP_001415941.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159068|gb|ABS66284.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 581 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 66/229 (28%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50 + L L + I H+I +P+G I S EL+ V+ Sbjct: 349 LRDREAALRHRAQLATLGQAAAVIAHEIRNPLGIIKTSAELVRRKTPMAPSEDRLMMFVL 408 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 ++ L + R +D + + + + + Sbjct: 409 DEVQRIDRLVKELLDYARPPQCAAVPLDLVTSIVQPALDFMAPELRRRDITLAARLPDHP 468 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + L+NL + A + GG V + V ++ + ++ NG + Sbjct: 469 VPIQGDKDLLHQALMNLLINAMDAAGDGGHVIVRVGQEEDSAVLHVEDNGPGV-PQDVRA 527 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D V + ++ + V A + + + + L Sbjct: 528 ALFDPFVTTKVNGTGLGLATVRSTAEAHGGAVSHADAPGGGAIFTLRLP 576 >gi|288554555|ref|YP_003426490.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus pseudofirmus OF4] gi|288545715|gb|ADC49598.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus pseudofirmus OF4] Length = 510 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 73/219 (33%), Gaps = 6/219 (2%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + S L V L + I H+I +PI + +L++ ++ + ++ Sbjct: 287 KRTEAQLRQSEKLKVVGELAAGIAHEIRNPITVLSGFTQLMENSHHKEMMQAELKRMDGI 346 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 L + + + ++ + E K + + Sbjct: 347 VEELLILAKPRAAELAPISIKELIEEVILLFESICMNQKINVNWNNNHNPLIYGDYNRLK 406 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++L+N+F A ++ G + I++ K++ ++ +G I + Sbjct: 407 QVLINVFKNAIEAIEYKGCIEITLSTIKDQVCIHIENDGPPIPSEMLCE-IGSPFYTTKE 465 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + E++ L + ++ VV++ L + Sbjct: 466 TGTGLGLMISSSIMKEHEGSLSIKNREESGVVVTLTLPR 504 >gi|218290986|ref|ZP_03495034.1| histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218239068|gb|EED06272.1| histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 420 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 68/229 (29%), Gaps = 20/229 (8%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56 M K + +S++ A L + I H+I +P+ L+L E + ++L Sbjct: 192 MRKKLQEFEKVSAL---AQLSAGIAHEIRNPLTTARGFLQLFAERCDDKDRAYLELTISE 248 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEK 108 L+ + + + +I + + F+ + + Sbjct: 249 LDRIRELLEDFMGLCRPDREDVAEVDMAEIARSVHRFLVPEASLCDIAFELNVPAHPIPA 308 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166 ++L+NL A + + + + ++ + + NG E + Sbjct: 309 AVRPAHIKQVLINLVQNALQACRGQAHAVVRLDVAEKEDRVLVQVVDNGCGI---ENMDR 365 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + + + ++ + K Sbjct: 366 IFRPFYTTKSTGTGLGLFVCKHIIESHGGSISVCSQVGAGTTVTVEIPK 414 >gi|212639830|ref|YP_002316350.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561310|gb|ACJ34365.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 729 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 K + L D +V L + I H+I +P+ A+ ++LL + + +I Sbjct: 497 KKEMEEQLRKSDTLSVVGQLAAGIAHEIRNPMTALKGFIQLLQGSIGNDCEQYNMYFHVI 556 Query: 54 RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 K + + + D+ V + Sbjct: 557 MSELKRIESIITEFLVLAKPQAVHYERGDVAKIMQETVDLLSVQATMHNIQIEATYEPVP 616 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ ++ +N+ A +P+GG +T+SV +++ G+ +K + Sbjct: 617 PIYCDPKQLKQVFINILKNAIEVMPKGGTITVSVAHVAEGVRIAVRDEGSGI-PKDKIKK 675 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E++ R+ E L Sbjct: 676 LGEPFYTTKERGTGLGLMVSYKIIEEHQGRIDVESEVGVGTTFYITLP 723 >gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 592 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 22/226 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIRLKF 66 + S + H++ +P+ +I +E L + + +Q+I+ + + Sbjct: 365 EQIRTEFVSNVSHELRTPLTSIKGYVETLLDERDCEPGVRERFLQVIKDETDRLERLITD 424 Query: 67 MRL--------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + V+ + ++ V+ ++V + + R + Sbjct: 425 LLNLSQLESASDSFDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQ 484 Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 + GG+V I V + ++ + G + F + + Sbjct: 485 LERLYINLVDNGIKYTSEGGQVKIKVYEDEDRVWSEIIDTGMGIPEEDLPRIFERFYRVD 544 Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + + E + L K Sbjct: 545 KTRSRKLGGTGLGLSIVKHILERHNGGIEVESKVEEGTKFIFWLPK 590 >gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] Length = 497 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--SM 58 + + + S +L ++ + + H+I +P+ AI LL ++ +I + Sbjct: 261 LNEALRKARHSDELKSIFLANMSHEIRTPLNAIVGFSSLLAHGDLDLTKDDIIEFTSLIE 320 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + ++ L +I + + + G Sbjct: 321 KNSQLLMVLISDILDLSKIESNTMEFNFCNISLHQVLNEIGSAQRMNMKKGVELLLDLPG 380 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++I +S + +++ NL A G + N ++ G E Sbjct: 381 QEITISTDPTRLSQVINNLVNNAIKFTSEGNICIGYRPATSNRVKIFVEDTGTGM-AKEV 439 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + +A K ++ + +L Sbjct: 440 IEHIFDRFYKGDAFKQGTGLGLAICRTIAERFKGKIEVASTPGKGTRFTIILP 492 >gi|253701288|ref|YP_003022477.1| histidine kinase [Geobacter sp. M21] gi|251776138|gb|ACT18719.1| histidine kinase [Geobacter sp. M21] Length = 490 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 15/227 (6%) Query: 3 KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 + + S + + LL + + H+I +P+ AI +L E + + ++ I Sbjct: 257 EARNEAIRSEKMASVGLLAAGMAHEIGTPLAAIMGYSGILSEELAGDPEKSDYLRRITEE 316 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------GEK 108 S ++ + GS I + + + + + + +++ Sbjct: 317 SKRIDRIVRGLLDYARPKGSQREEIEVLPLLEKVVELLEAQGALKLLEVTVEAEPSLPRL 376 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL M A ++PRGGK+ + + G Sbjct: 377 HADPYQLEQLLINLIMNAKDAMPRGGKLQLKGLSVGGGVAIEVADTGEGMPPEHLPLVFD 436 Query: 169 DGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A L + L Sbjct: 437 PFFTTKEPGKGTGLGLAIAARIAESCGGSLTVQSELGEGSRFRLTLP 483 >gi|218780263|ref|YP_002431581.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761647|gb|ACL04113.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 494 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 68/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 + K L + + +L L + + H + +P+G I +L+ E ++ Sbjct: 252 LHKTQVQLLQAEKMASLGKLAAGVAHQLNNPLGGIILFAQLILEEYELPEGAVADLKRIL 311 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106 + S L+F R D + ++E+ + V Sbjct: 312 DDAQRSRDIVKELLEFARQTRQEVRPHDLNRAISRTLFLLENQSVFQNIIIVKNLAEDLP 371 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164 ++ + +N+ + A ++ G++ ++ + G + Sbjct: 372 PVPADIQQLNHVFMNIILNAAEAMEGRGELRVTSYLIPGRKIAAIEISDTGPGI-PKDVL 430 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + R++ D V L Sbjct: 431 PHVFEPFYTTKEQGKGTGLGLSLVYGIVESHHGRIMASNNHDGGAVFRIELP 482 >gi|295704365|ref|YP_003597440.1| signal transduction histidine kinase with CheB and CheR activity [Bacillus megaterium DSM 319] gi|294802024|gb|ADF39090.1| signal transduction histidine kinase with CheB and CheR activity [Bacillus megaterium DSM 319] Length = 1186 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 18/229 (7%), Positives = 69/229 (30%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K L + ++++ L + I H+I +P+ ++ L+L+ + + + + + Sbjct: 959 RKQSEMMLKNSEMLSALGQLAAGIAHEIRNPLTSLKGFLQLMMQEETYKK--EYMDVMMS 1016 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT---GE 107 + + I + + + Sbjct: 1017 EFNRLELIISELLILAKPEVVKYENKQINLILQDVCTLLHTQAILKNITISTDFEEKLPV 1076 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165 + ++ ++ +N+ + ++ G + + + N+ + + G ++ T Sbjct: 1077 VHCIEKDMKQVFINMVKNSIEAMDDPGSILVVSKFDPDTNQVVIQVIDEGKGM-PKDRLT 1135 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + +K + + + + L Sbjct: 1136 RISEPFYTTKEKGTGLGLMVSHKIISNHKGSISYDSEEGKGTTVEIRLP 1184 >gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM 20075] gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM 20075] Length = 619 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ +E L + I + +++ + + I + + Sbjct: 380 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVAQQETSRMIRMINDLLSLS 439 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112 V + I + V + Sbjct: 440 RMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 499 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + +++ N+ A P GG +T+ + S+ I S+ G + F + Sbjct: 500 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 559 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + L Sbjct: 560 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 606 >gi|229075084|ref|ZP_04208085.1| hypothetical protein bcere0024_23970 [Bacillus cereus Rock4-18] gi|228708015|gb|EEL60187.1| hypothetical protein bcere0024_23970 [Bacillus cereus Rock4-18] Length = 590 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + KN I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGVIISVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|229116155|ref|ZP_04245546.1| hypothetical protein bcere0017_24440 [Bacillus cereus Rock1-3] gi|228667272|gb|EEL22723.1| hypothetical protein bcere0017_24440 [Bacillus cereus Rock1-3] Length = 590 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + KN I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGVIISVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567 >gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis] Length = 579 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M + + + + H++ +PI +I E L ++ E + +I Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396 Query: 56 SSMSAIIRLKFMRLAFGYTGSV---------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S ++ + + + + +Q++ Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLKHKADEKGISLQLNVPK 456 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +S + ++ LNL A P GG V I+V+ + + + +G + E Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERDIQIEVADSGIGIQKEEI 516 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + V L ++ ++ V + L++ Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTLKR 573 >gi|227902982|ref|ZP_04020787.1| histidine kinase [Lactobacillus acidophilus ATCC 4796] gi|227869225|gb|EEJ76646.1| histidine kinase [Lactobacillus acidophilus ATCC 4796] Length = 618 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ +E L + I + +++ + + I + + Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETGRMIRMINDLLSLS 438 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112 V + + I + V + Sbjct: 439 RMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALWVEIDT 498 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + +++ N+ A P GG +T+ + ++N I S+ G + F + Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIPRKDLAKIFDRFYR 558 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + L Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605 >gi|194014530|ref|ZP_03053147.1| sporulation kinase C [Bacillus pumilus ATCC 7061] gi|194013556|gb|EDW23121.1| sporulation kinase C [Bacillus pumilus ATCC 7061] Length = 436 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSS 57 N + + L + + I H++ +P+ +++ L+L+ D + Sbjct: 200 RSNQQLQMQAQKLAVAGQIAAGIAHEVRNPLTSVNGFLQLMKTQYPERTDYFDIIFSEIK 259 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112 + + + LA + +EQVI + Sbjct: 260 RIDFVLSELLVLAKPQAVHFQEVQLHELLEQVITLLKTNAVLSNIDLKQPFKRQDAGAIL 319 Query: 113 ---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL A ++P GG + IS + NE +++ G + +I D Sbjct: 320 ADANQMKQLFINLIKNAIEAMPEGGSIYISTEKVLNEWKITIQDEGKGMSEEDI-QKIYD 378 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R+ L Sbjct: 379 PFFSTKKEGTGLGLTICATILKDHHGRMDVSSELGKGTAFHIYLP 423 >gi|58336427|ref|YP_193012.1| histidine kinase [Lactobacillus acidophilus NCFM] gi|58253744|gb|AAV41981.1| putative histidine kinase [Lactobacillus acidophilus NCFM] Length = 618 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ +E L + I + +++ + + I + + Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETGRMIRMINDLLSLS 438 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112 V + + I + V + Sbjct: 439 RMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALWVEIDT 498 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + +++ N+ A P GG +T+ + ++N I S+ G + F + Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIPRKDLAKIFDRFYR 558 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + L Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605 >gi|311030852|ref|ZP_07708942.1| Signal transduction histidine kinase, nitrogen specific, contains PAS/PAC domain [Bacillus sp. m3-13] Length = 422 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 69/226 (30%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 + K ++ L V L + I H+I +P+ +I ++L+ ++++ Sbjct: 196 LKKTEQLLVTKEKLSVVGELSAGIAHEIKNPLTSIKGFIQLIQLSGKANKNHVEMVLSEI 255 Query: 58 MSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + +E + Sbjct: 256 DRINDIVSELLVLSKPQTKELTLISILEVLQYVIKLVENEAAINNISFSIENIGPDTMVR 315 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ +NL + ++P GG V I+ +++ +K +G I Sbjct: 316 GDKNNLKQVFINLIKNSMEAMPDGGTVMITGLRETDGRKSIQVKDDGIGISSS-NMDSIG 374 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + E++ + E + + ++ L Sbjct: 375 NPFFTSKEKGMGLGLTITKKIIEEHQGNIRIESKEGNGTTVTIDLP 420 >gi|302871717|ref|YP_003840353.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor obsidiansis OB47] gi|302574576|gb|ADL42367.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor obsidiansis OB47] Length = 576 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 71/226 (31%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + I+D+ + +I + + + Sbjct: 343 ERVRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVALKFLNIIEVEVERLVRLIND 402 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIE------------DFIAVDKRVQVSWTGEKIDLSRE 114 + + ++ + + + ++V E Sbjct: 403 LLYLSEIENAAMPILDEKVVVKEVVLESIELLKIKAEKKNIQFVDIKVPDGLEMNIYRDW 462 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +I +NL A GKV ++V+ S + +K G E +I + Sbjct: 463 LKQIFINLIDNAIVYNKENGKVWVTVEKSNGMVVIKVKDTGIGIPEKEI-ERIFERFYRV 521 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + + ++ Sbjct: 522 DKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGYGSEFTVIIP 567 >gi|260892382|ref|YP_003238479.1| histidine kinase [Ammonifex degensii KC4] gi|260864523|gb|ACX51629.1| histidine kinase [Ammonifex degensii KC4] Length = 555 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 14/210 (6%) Query: 18 LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 L + + H++ +P+ +I L+LL D+ E ++++ + ++ Sbjct: 339 LATALFHEVRNPLTSIKGVLQLLYEKRDDQDPERRYLEVVLGELDRTVRIIRNFLYFARP 398 Query: 74 TGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125 L + V A V + + + +LNL Sbjct: 399 KDCHPVPTDLDALLRDILLMVELQASAARVEVSYDPHPGTPVILVDPDLIKQAVLNLAQN 458 Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++P+GGK+ + I ++ G PE F ++ + + + Sbjct: 459 ALQAMPQGGKLFFRLYPQGSEWVIIEVEDTGTGI-PPEHFPRLGEAFFTTRRGGTGLGLA 517 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + R+ E + + Sbjct: 518 VSYQIAKMHGGRIEVESEEGKGSKFRIKIP 547 >gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 587 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 22/226 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I +E L ++ +D + +I ++ + Sbjct: 361 EQMRRDFVANVSHELRTPMTSIQGFVEALLDGLAEDKESQDRYLNVILDETVRLNRLVSD 420 Query: 67 MRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRE 114 + + L L + + V + Sbjct: 421 LLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQVAKQELSVDIDTPENISAVTGNRDR 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 ++L+NL A + P GGK+T+S +D ++ + G E + + + Sbjct: 481 IQQVLINLLGNAISFTPPGGKITLSAKDVGDKVEVQVTDTGMGIPPEEQDKIWERFHKVD 540 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + + E L+K Sbjct: 541 KARTRSFGGTGLGLSIVKQIVDAHGGDVGLESTPGKGSTFYFTLKK 586 >gi|89096702|ref|ZP_01169594.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89088717|gb|EAR67826.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 458 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 58/230 (25%), Gaps = 19/230 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 M + + N + S + HD SP+ I ELL + +++I S Sbjct: 230 MQRQLQHNDEARKS---FISNVSHDFQSPLMNIQGYAELLKLDVNETERVQYLEIINDES 286 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------TGE 107 K + + + + + + Sbjct: 287 KRLSHLTKQLLIMTSLDQNAYPMKVSEVRADKQIKQAIRRYQWLIEEKEIEVSYNLEHCV 346 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + + NL A G + I ++ + + + + K G E F Sbjct: 347 FKYDAELMTNVWDNLMTNAIKYSSPGDSMWIGLEKRETDLVITFKDTGAGMSEKEMDQIF 406 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + ++ V + L Sbjct: 407 DRFYRVDSARKKGGTGLGLSIVKQIIDLHDGKISVASKPGEGTVFTITLP 456 >gi|46199663|ref|YP_005330.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27] gi|46197289|gb|AAS81703.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27] Length = 373 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 57/230 (24%), Gaps = 19/230 (8%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 + L A L + H++ +P+ A+ E L + + +++ ++ Sbjct: 135 RLAEALEKVEKTRAELIGTVAHELRTPLAALQGYAEGLMDGVLSKEKAAEGILREVKAMR 194 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKI 109 R+ + + + + + + Sbjct: 195 RLVEDLSLVSRVEAKAVEIRPKPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQVW 254 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQ 166 ++L NL A P+GG+V + F + G P F + Sbjct: 255 ADEERVLQVLANLLTNALRHTPQGGEVRLRAFRQGEAVAFQVADTGPGIPEEHLPHIFER 314 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L R+ E + L Sbjct: 315 FYRVDKARSRKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLP 364 >gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 579 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 73/238 (30%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M + + + + H++ +PI +I E L ++ E + +I Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S ++ + + + + +Q++ Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLQLNLPK 456 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +S + ++ LNL A P GG V I+V + + + +G + E Sbjct: 457 DPLYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKDIQIEVADSGIGIQKEEI 516 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + V L ++ ++ + V + L++ Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKSEPGRGTVFTVTLKR 573 >gi|260062752|ref|YP_003195832.1| putative two-component system sensor kinase/response regulator fusion protein [Robiginitalea biformata HTCC2501] gi|88784320|gb|EAR15490.1| putative two-component system sensor kinase/response regulator fusion protein [Robiginitalea biformata HTCC2501] Length = 941 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 61/235 (25%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + L +D L + + I H+ +P+ I +E L++ E + +R+ + Sbjct: 421 LKQRSNLELQELDRLKSGFFANISHEFRTPLTLIKGPIEKLEQNPGETLSREEVRMIRRN 480 Query: 60 AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSW 104 L R+ G + + + + Sbjct: 481 TQRVLGLVNQLLDLSRIDQGELRLKPTEGDVFKCLRAAASAFNSHAAQRRMDYSVRIPTD 540 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + +++ NL A GG V + +G + Sbjct: 541 SLWASFDRDKIEQVVYNLLSNAFKFCEDGGTVAFEATYKDELLTMQVADSGRGIPSGDLP 600 Query: 163 -KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G + + I L + E + + L Sbjct: 601 YIFDRFYQAQGGMTRDREGSGIGLALSRDLVELMDGTITVESEEGEGARFTVQLP 655 >gi|329765363|ref|ZP_08256943.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138269|gb|EGG42525.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 442 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 79/210 (37%), Gaps = 5/210 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMR 68 ++++ L +RI HD+ +P+ I +E + + +++ + + + + Sbjct: 36 ERLEVIGELSARIAHDLRNPLAVIQCGVEAIKQDVKCDEKTIARLERMQRAVGRMTHQIN 95 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---ILLNLFMV 125 +T ++ I +I++ I+ + V++ E I + ++ K + N+ Sbjct: 96 EVLDFTKPRSLVLSQCHILDIIKEVISNNSNVEIKSLSENIKIICDKEKLKVVFNNMITN 155 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A+ ++ ++I + KN I + +G+ + +I + + + Sbjct: 156 ANHAITDEDIISIQTSEDKNNIIIQISDSGHGI-SADILPKIFEPLFTTKQKGTGLGLTS 214 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + E+ + + +L K Sbjct: 215 CKSIIQEHGGTINVSSEIGKGTTFTIILPK 244 >gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus subtilis subsp. spizizenii str. W23] Length = 611 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 25/234 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58 + + + H++ +P+ + + LE L E E+ + + + + Sbjct: 368 TEQEKMDQER--REFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETE 425 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 I + + + + V + + D ++ ++ R Sbjct: 426 RMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMTKEQHVEFIRNLPDRNLY 485 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK-- 163 + ++L N+ A P GG VT S+ ++ E S+K G + Sbjct: 486 VEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK 545 Query: 164 -FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + I+ ++ L Sbjct: 546 VFDRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIWADSIEGKGTTITFTLP 599 >gi|228990433|ref|ZP_04150398.1| hypothetical protein bpmyx0001_11950 [Bacillus pseudomycoides DSM 12442] gi|228768959|gb|EEM17557.1| hypothetical protein bpmyx0001_11950 [Bacillus pseudomycoides DSM 12442] Length = 465 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + ++LV + H+I +P+ I + LL E I+++ + Sbjct: 240 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKHIQEQDQFYFSVIEQEIKR 299 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 K + D + + I + + + +Q+ I S Sbjct: 300 INEIVSEFLILGKPTAIIEKKYDVRDIIKEVSLIIRSEANLHNIIFTLQLPDHPVHIRCS 359 Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ +++LN+ A ++ G +TI V +K + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMSSGDVLTIQVTSNKEHAQLHIIDTGKGI-PKHIQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + +++ + + + L Sbjct: 419 FTSKDTGTGLGLVICKRIIEMYDGQIVIDSTKNKGTTVHIKLP 461 >gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis subsp. subtilis str. 168] gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp. subtilis str. 168] gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5] gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis] gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis subsp. subtilis str. 168] gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto BEST195] gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis BSn5] Length = 611 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 25/234 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58 + + + H++ +P+ + + LE L E E+ + + + + Sbjct: 368 TEQEKMDQER--REFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETE 425 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 I + + + + V + + D ++ ++ R Sbjct: 426 RMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMTKEQHVEFIRNLPDRDLY 485 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK-- 163 + ++L N+ A P GG VT S+ ++ E S+K G + Sbjct: 486 VEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK 545 Query: 164 -FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + I+ ++ L Sbjct: 546 VFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLP 599 >gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 396 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 66/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +++ + S L +L L + + H+I +P+ +I ++L+ E E + + Sbjct: 166 LSRAQAEVVQSEKLASLGYLSAGMAHEIRNPLNSIALFVQLIKGGLEEPERQEYVEKILK 225 Query: 59 SAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + L + R + Sbjct: 226 EVDRIDNILGKLLDASKRPKFEISEVRLDRILEHTLEAFTPQLRQKRIKVVRDYRNIPPA 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ + +P G +T+ + + + G E I Sbjct: 286 IKADPMEIEQIFTNLFLNSIHVMPEEGTLTVELDQDADYIKLRVSDTGPGI-PAENLPNI 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + K ++ E D + L Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKTYKGKIEVEKSDPTGTTFAVRLP 391 >gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 611 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ + + LE L E E+ + + + + I + + Sbjct: 380 FVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETERMIRLVNDLLQLSK 439 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + + + + D ++ ++ R + + ++L N Sbjct: 440 FDSKDYQFNREWIHFIRFISLIIDRFEMTKEQHVEFIRQLPDRSLYVEIDQDKITQVLDN 499 Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV------E 173 + A P GG VT SV ++ E S+K G + +I + Sbjct: 500 IISNALKYSPEGGHVTFSVNVNEEEELLYISVKDEGIGIPKKD-MEKIFERFYRVDKART 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + I+ ++ L Sbjct: 559 RKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 599 >gi|332096264|gb|EGJ01267.1| signal transduction histidine-protein kinase atoS [Shigella dysenteriae 155-74] Length = 403 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 74/226 (32%), Gaps = 16/226 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 179 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 238 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 239 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 298 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 299 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 357 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D + + + + ++ + + + + + Sbjct: 358 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLI 403 >gi|321315121|ref|YP_004207408.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis BSn5] gi|320021395|gb|ADV96381.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis BSn5] Length = 500 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + ++ ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 273 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 331 Query: 58 MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108 K + D + + I + V+ +Q Sbjct: 332 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 391 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++LN+ S+P GGK+TIS+ + I + NG E I Sbjct: 392 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 450 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + E ++ L Sbjct: 451 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 496 >gi|296329691|ref|ZP_06872176.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674088|ref|YP_003865760.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp. spizizenii str. W23] gi|296153189|gb|EFG94053.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412332|gb|ADM37451.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp. spizizenii str. W23] Length = 486 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + ++ ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 259 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 317 Query: 58 MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108 K + D + + I + V+ +Q Sbjct: 318 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 377 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++LN+ S+P GGK+TIS+ + I + NG E I Sbjct: 378 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 436 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + E ++ L Sbjct: 437 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 482 >gi|221309230|ref|ZP_03591077.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221313558|ref|ZP_03595363.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318480|ref|ZP_03599774.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322753|ref|ZP_03604047.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] Length = 500 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + ++ ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 273 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 331 Query: 58 MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108 K + D + + I + V+ +Q Sbjct: 332 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 391 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++LN+ S+P GGK+TIS+ + I + NG E I Sbjct: 392 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 450 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + E ++ L Sbjct: 451 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 496 >gi|16078430|ref|NP_389249.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp. subtilis str. 168] gi|81341921|sp|O31671|KIND_BACSU RecName: Full=Sporulation kinase D; AltName: Full=Sensor histidine kinase D gi|2633737|emb|CAB13239.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp. subtilis str. 168] Length = 506 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + ++ ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 279 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 337 Query: 58 MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108 K + D + + I + V+ +Q Sbjct: 338 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 397 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++LN+ S+P GGK+TIS+ + I + NG E I Sbjct: 398 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 456 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + E ++ L Sbjct: 457 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 502 >gi|228907066|ref|ZP_04070930.1| hypothetical protein bthur0013_12390 [Bacillus thuringiensis IBL 200] gi|228852570|gb|EEM97360.1| hypothetical protein bthur0013_12390 [Bacillus thuringiensis IBL 200] Length = 508 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 60/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + +++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGNIFIDSTENNGTTVHIEIP 504 >gi|108763090|ref|YP_633515.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus DK 1622] gi|15076966|gb|AAK82997.1|AF285783_2 histidine kinase HsfB [Myxococcus xanthus] gi|108466970|gb|ABF92155.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus DK 1622] Length = 527 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 M + + + + + A+ L + H+I +P+G I +L+ + E + LI Sbjct: 290 MTRRL---IETEKMAAVGQLAGGVAHEINNPLGGILAFAQLMSRDAGRSDADLESLGLIE 346 Query: 55 LSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104 S++ ++ + ++ D + D + + V++ Sbjct: 347 ESALRCKRIVESLLKFSRHSRVEDRRPFDLSKCVEDAAVLFRAQLKSMPTVELTLGLADG 406 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163 + + A+++LNL SLP K+ + + F++ G Sbjct: 407 LPKVYGDPGQLAQVVLNLLQNGLQSLPTREGKLKLVTGREGDRCFFAVTDTGTGIEEKHL 466 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + ++ + + L Sbjct: 467 P-RIFEPSFTTKAPGEGTGLGLSIAYRIVQDHGGSFHVDTEVGEGSCFTVFLP 518 >gi|258404234|ref|YP_003196976.1| histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796461|gb|ACV67398.1| histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 525 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 15/225 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M KN L + L+ + +++ H+I +P+ +I S L + + + + + Sbjct: 301 MEKN---RLERLSLLGQMAAQVAHEIKNPLNSIKGSAHYLKANFEGRILHEFLHVIEEES 357 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKI 109 + ++ D+ ++ D + + R Sbjct: 358 ERLSDILTDFLNFSKPGVPHFEREDLNALVRDTLRLASRDTQDGVVRLDSTLDPQLPPFW 417 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + LLNL + A ++ GG V +S + ++ +G E I Sbjct: 418 FDYAKLRQSLLNLVLNAVHAVREGGTVQVSTIAQPDRGQLVIQDDGQGITAQEL-ENIFK 476 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V +K + + L Sbjct: 477 PFYTTKNRGNGLGLSIVEQYIRAHKGTIDVDSQPGQGTTFIITLP 521 >gi|253700986|ref|YP_003022175.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251775836|gb|ACT18417.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 1146 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 71/264 (26%), Gaps = 51/264 (19%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------------- 42 + L + ++ L + + H+I +P+G I ++L L++ Sbjct: 880 LKATHSQLLQQEKMASIGQLAAGVAHEINNPMGFISSNLSTLEKYLERISSFITLQSAKV 939 Query: 43 ----------------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + E M F R+ T Sbjct: 940 MPNATAEVLAELTQARQTLKVDYILQDAPDLVAESMDGANRVRKIVQNLKTFSRVDDAET 999 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFMVAHASLPR 132 VD L + + + + + + ++ LN+ + A ++ Sbjct: 1000 MYVDLNDCLESTVTIAWNELKYKTTLNRDYGELPPVKCFPHQLNQVFLNILVNAAHAIEV 1059 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190 G+VTI+ + ++ G E +I + + + + Sbjct: 1060 QGEVTITTRCLGETVKVTISDTGCGI-PDEIKERIFEPFFTTKEVGKGTGLGLSISYDIV 1118 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 ++ + + S +L Sbjct: 1119 KKHGGSIEVKSTPGKGTTFSVVLP 1142 >gi|229102033|ref|ZP_04232746.1| hypothetical protein bcere0019_11980 [Bacillus cereus Rock3-28] gi|228681420|gb|EEL35584.1| hypothetical protein bcere0019_11980 [Bacillus cereus Rock3-28] Length = 478 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 58/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 253 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 312 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 313 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 372 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI + D++ + G + Sbjct: 373 KDHMKQVVLNITKNAIEAMTSSDTLTIVITDNETHAQLQIIDTGKGI-PKHIQKHLFHPF 431 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 432 FTNKDTGTGLGLVICKRIVEMYDGHIFIDSKENEGTTVHIEIP 474 >gi|152974863|ref|YP_001374380.1| integral membrane sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023615|gb|ABS21385.1| integral membrane sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 498 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 63/223 (28%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 + + ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNEMQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYTLEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111 + + T ++ + DI Q + I + + Sbjct: 333 INEIVSEFLILGKPTAIIEDKYDIRDIMQEVSLIIRSEANLYNITFTLYLPDHPVYIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI + +++ + G + Sbjct: 393 KDHMKQVILNITKNAIEAMSSGDTLTIIITSNQDHAQLHIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + R+L + + + Sbjct: 452 FTSKDTGTGLGLVICKRIIEMYGGRILIKSKEAQGTTVQIEFP 494 >gi|78358574|ref|YP_390023.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220979|gb|ABB40328.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 410 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 63/241 (26%), Gaps = 37/241 (15%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50 + + + L + + H+I +P+ A+ E + D ++ Sbjct: 163 QAEKMATMGVLAAGVAHEINNPLTAVTGFAEGIRRRLPKLRGLVDDQLFTDFQEYTDTIL 222 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105 + L F R + + + + ++ + ++V+ Sbjct: 223 KECLRCQDIVQTLLTFSRPSSAEFSQLSLNSVVSETVWLLHNHFKKHHNIKVNLNLDETV 282 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----------DSKNENIFSLKING 155 + +++LNL A S+ G ++ + G Sbjct: 283 PHIFGDEAQLKQVVLNLLTNALDSMSETGNKDRCYFSGVLAVETAPFGESGAKLIVSDTG 342 Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P+ ++ + + I + ++ + + + L Sbjct: 343 CGI-PPDNIDKLFEPFFTTKNVGKGIGIGLSTCYSIVRKHGGEITVTSTEGKGSQFTVTL 401 Query: 214 E 214 Sbjct: 402 P 402 >gi|307634870|gb|ADI84366.2| sensor histidine kinase response regulator, PAS and PAC domain-containing [Geobacter sulfurreducens KN400] Length = 863 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 27/237 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 M K + L + L +L L I HD + + I ++ L LD E + Sbjct: 485 MEKEL---LKAAKLESLGVLAGGIAHDFNNLLTVIMGNISLALTQLDSPDKVKEYLAKSE 541 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +S A + + V + + + + +F V+ ++ + Sbjct: 542 KASFRAQDLTRQLLTFAKGGAPVKTASSITTVIRESAEFAMRGSSVRCEFSISSDLWPVD 601 Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157 ++L NLF+ A+ ++P GG + ++ S+ G Sbjct: 602 IDAGQISQVLHNLFINANQAMPAGGVIQTHCENVVIGPEEALPLQAGRYVKVSIIDQGVG 661 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + + ++ + E + L Sbjct: 662 I-PEENLGKVFDPYFTTKAQGSGLGLASSFSIVTQHGGTITVESAEGRGTTFHIFLP 717 >gi|239787669|emb|CAX84136.1| Sensor protein [uncultured bacterium] Length = 895 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEV-------MQ 51 + ++ N+ + L L S I HD+ +P+ I E L+ + + Sbjct: 650 LTRDAQVNMEAERLRNSLLSAISHDLRTPLTVISGMAEAILMASPPLSEPHTGLALAIRD 709 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEK 108 + ++ L R+ G L ++ + + A V+V GE Sbjct: 710 QVARTTTMVGNLLDLARMQMGQVVLQREWQTLEEVIGLSMERSAPSLTGHVVRVDLPGEM 769 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + + + NL A P G +TI + +++ +G Sbjct: 770 PLIEMDTGLMERAFNNLLENAARHTPPGSAITIVAKVRGMFAEIAVEDDGPGIPPGMEKK 829 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G +E + + V + + + E L Sbjct: 830 LFDKFTRGKMEKPVSGFGLGLTIVRSIVEAHGGMIRAENRTGGGARFVVSLP 881 >gi|39996629|ref|NP_952580.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983510|gb|AAR34903.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 803 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 27/237 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 M K + L + L +L L I HD + + I ++ L LD E + Sbjct: 425 MEKEL---LKAAKLESLGVLAGGIAHDFNNLLTVIMGNISLALTQLDSPDKVKEYLAKSE 481 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +S A + + V + + + + +F V+ ++ + Sbjct: 482 KASFRAQDLTRQLLTFAKGGAPVKTASSITTVIRESAEFAMRGSSVRCEFSISSDLWPVD 541 Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157 ++L NLF+ A+ ++P GG + ++ S+ G Sbjct: 542 IDAGQISQVLHNLFINANQAMPAGGVIQTHCENVVIGPEEALPLQAGRYVKVSIIDQGVG 601 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + + ++ + E + L Sbjct: 602 I-PEENLGKVFDPYFTTKAQGSGLGLASSFSIVTQHGGTITVESAEGRGTTFHIFLP 657 >gi|219669249|ref|YP_002459684.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219539509|gb|ACL21248.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 610 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 12/221 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQLI 53 L ++LV + + I H+I +P+ + L+L+ E + + Sbjct: 383 TEMVRLDRLNLVGQMAAGIAHEIRNPMTTVRGYLQLMGEKTQDMGQKSTLHFMIEELDRA 442 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + K + + L L + + R + + Sbjct: 443 NTIIKEFLTLAKSHKPNYQIFNLNTLLQNLHPLIEADSFTQNKQIRFTPGDIPDIEISPK 502 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + +++LN+ ++ GG +TI + + ++K G+ E ++ Sbjct: 503 DITQMVLNICRNGLEAMSEGGCLTIQTYKKNHTVVLAIKDEGHGI-PKELLEKLGTPFFT 561 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + R+ Sbjct: 562 TKESGTGLGLSICYKIAKSHNARIDVLSSP-EGTQFLISFP 601 >gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 621 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 70/235 (29%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 AK++ ++ + + + H++ +P+ AI +LL + + ++ S Sbjct: 380 AKSLEEDVKTTK--TEFIATMSHELRTPLNAIIGFSQLLSSNRYGNMNEKELKYSFSILK 437 Query: 58 ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSW 104 + + + ++ ++ I +++++ ++ + + Sbjct: 438 GGKHLLNLINDILDFSKIHSNKMELNIETINLKEICDEIKTFITPLATKKGITVEYNNKF 497 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +I+ NL A P GKV++ + S+ +G + Sbjct: 498 DIDINLDKLKFIQIMSNLLSNAVKFTPDKGKVSVDIDFVAEYVQVSVTDSGIGIPEHKLN 557 Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + E + + Sbjct: 558 MIFDPFIQADSSNTRKYGGTGLGLALVKEYVEMHGGTIWVESELGKGSTFTFTIP 612 >gi|126651966|ref|ZP_01724158.1| two-component sensor histidine kinase [Bacillus sp. B14905] gi|126591235|gb|EAZ85344.1| two-component sensor histidine kinase [Bacillus sp. B14905] Length = 621 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 64/235 (27%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + + + S + H++ +P+ + + LE L + I + + + Sbjct: 379 TEQEKIEMDRRE----FVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPTFLNVTQTE 434 Query: 57 SMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWT 105 + I + + + + + + I + + + Sbjct: 435 TERMIRLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDKVQFARLFPETS 494 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++ N+ A P GG + + + +G E Sbjct: 495 FYVEIDTDKVTQVIDNIISNAIKYSPDGGNIRFGFTGQGDMLKVMISDDGMGI-PKENVG 553 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D ++ + + + ++ E + + L Sbjct: 554 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608 >gi|218778398|ref|YP_002429716.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759782|gb|ACL02248.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 750 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 63/231 (27%), Gaps = 26/231 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAI 61 ++ + L + HD+ + + I ELL E +E++Q + Sbjct: 378 QKVESIGRLAGGVAHDLNNLLTPILGYSELLLEDLDPEGPNRQSVNEILQAGIRARDLVC 437 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L F R +V+ + + ++ I D + + + + ++ + +I Sbjct: 438 QLLAFSRKQTLEYKAVNLNTMVNGFKSLLRRTIREDIELMIRPSPDICNIMADAGQIEQV 497 Query: 122 LFMVAHASLPRGGK------------------VTISVQDSKNENIFSLKINGNLARFPEK 163 L +A + + + + + ++ NG+ Sbjct: 498 LMNLAVNASDAMPRGGILTIETARVYLDENYAKLHEDAKAGDYIMMAVSDNGDGMDQKTL 557 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + L Sbjct: 558 QHIFEPFFSTKGQQGTGLGLATVYGIVKQHGGNVWVYSEEGEGTTFKVYLP 608 >gi|327182634|gb|AEA31081.1| putative histidine kinase [Lactobacillus amylovorus GRL 1118] Length = 618 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 67/240 (27%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + D S + H++ +P+ ++ +E L + I + +++ + + Sbjct: 366 DVTEQQKNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKFLEVTQQETS 425 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106 I + + V + + I + V Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 485 Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + +++ N+ A P G +T+ + +KN I S+ G Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNHVILSISDQGLGIP 545 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + R+ + + L Sbjct: 546 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605 >gi|315037329|ref|YP_004030897.1| histidine kinase [Lactobacillus amylovorus GRL 1112] gi|312275462|gb|ADQ58102.1| putative histidine kinase [Lactobacillus amylovorus GRL 1112] Length = 595 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 67/240 (27%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + D S + H++ +P+ ++ +E L + I + +++ + + Sbjct: 343 DVTEQQKNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKFLEVTQQETS 402 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106 I + + V + + I + V Sbjct: 403 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 462 Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + +++ N+ A P G +T+ + +KN I S+ G Sbjct: 463 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNHVILSISDQGLGIP 522 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + R+ + + L Sbjct: 523 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 582 >gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 957 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 64/230 (27%), Gaps = 21/230 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 F + M + S + H++ +P+ ++ EL+ + + + + I + Sbjct: 577 TKEFEVDQMK--SEFVSTVSHELRTPLASVLGFTELMLNKTLKEERQKKYLTTIYQEAQR 634 Query: 60 AIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + D L + + +V + + + +S + Sbjct: 635 LTSLINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVM 694 Query: 112 SRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ N+ A P GG VT+ V ++ ++ G Sbjct: 695 GDKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPNKALGQLFTK 754 Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + + + + +L Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804 >gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] Length = 618 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 38/244 (15%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 KN S + H++ +P+ ++ +E L + I + +++ + Sbjct: 369 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 421 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102 + I + + V + + + V Sbjct: 422 TERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKY 481 Query: 103 -------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + + +++ N+ A P GG +T+ + S+N+ I S+ G Sbjct: 482 SIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQIILSISDQG 541 Query: 156 NLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + F + + + + +K R+ + + Sbjct: 542 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 601 Query: 211 ALLE 214 L Sbjct: 602 ISLP 605 >gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] Length = 621 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 38/244 (15%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 KN S + H++ +P+ ++ +E L + I + +++ + Sbjct: 372 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 424 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102 + I + + V + + + V Sbjct: 425 TERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKY 484 Query: 103 -------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + + +++ N+ A P GG +T+ + S+N+ I S+ G Sbjct: 485 SIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQIILSISDQG 544 Query: 156 NLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + F + + + + +K R+ + + Sbjct: 545 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 604 Query: 211 ALLE 214 L Sbjct: 605 ISLP 608 >gi|148657135|ref|YP_001277340.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus sp. RS-1] gi|148569245|gb|ABQ91390.1| signal transduction histidine kinase, nitrogen specific, NtrB [Roseiflexus sp. RS-1] Length = 819 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 69/241 (28%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS- 57 + + S L A+ L + + H++ +P+ +I +L L + + + + ++ + Sbjct: 419 RRLEEQLIKSEKLSAIGQLVAGVAHEVNNPLTSISGYTQLMLRDASLPSAIREDLQHINT 478 Query: 58 ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107 L F R VD L + + VD V+ + Sbjct: 479 QAERAARIVQNLLMFAREHKPQRMPVDINQVLQSTLTLRAYQLRVDNITVVTDFAPDLPQ 538 Query: 108 KIDLSRERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKING 155 + + ++ LNL AH ++ + + ++ G Sbjct: 539 TVADPHQLQQVFLNLINNAHQAMIERGGKGTLTLRTSVERRVGEGGREETCIRVAVNDTG 598 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + + E+ R+ E + L Sbjct: 599 IGIPPRNLN-RIFDPFFTTKPIGQGTGLGLSICFGIIQEHHGRIWAESEVGVGTTMYVEL 657 Query: 214 E 214 Sbjct: 658 P 658 >gi|327438193|dbj|BAK14558.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 611 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 66/235 (28%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + ++ + + + H++ +P+ + + LE L + I + + + Sbjct: 372 TEQEKIDMERRE----FVANVSHELRTPLTTMRSYLEALAEGAWKDENIAPTFLNVTQTE 427 Query: 57 SMSAIIRLKFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 + I + + + + ++ + V+ + Sbjct: 428 TERMIRLVNDLLQLSKMDSQEYELNLEFVEFNKFFTQIIDRFEMSKSQNVEFIRLLPEKS 487 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++ N+ A P GG + N + +G E T Sbjct: 488 YFVDIDTDKLTQVIDNIISNALKYSPDGGNIRFGFTVHDNMIRVMISDDGMGI-PKENVT 546 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D ++ + + + ++ E + + L Sbjct: 547 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 601 >gi|328952174|ref|YP_004369508.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452498|gb|AEB08327.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 481 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 74/233 (31%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----------DE 48 + ++ L S + A+ L S I H++ +PI I + E L E + Sbjct: 242 LEEHQEQLLQSRKIAAIGTLTSGIAHELNNPINNIVLTAETLKEDFRHVGEEEAVSLLHD 301 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 ++ +S L F R + + + ++ + +V E Sbjct: 302 ILVQADRASEIVKGLLDFSRSERPEFELLTIPAVVDETLKLVRNQLMLSGIQVDKEVPAE 361 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEK 163 +S +R ++ LN+F+ A ++P GG + + + G PE Sbjct: 362 MPLISGDRKSLQQVFLNIFINAIQAMPDGGYLRIKVYPEEDHWLKIDVGDTGAGI-DPEH 420 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ + V + L Sbjct: 421 LPRIFDPFYTTKEVGRGTGLGLSVTYGIIEKHGGHIEAHSKKGEGTVFTITLP 473 >gi|229004185|ref|ZP_04161986.1| hypothetical protein bmyco0002_11500 [Bacillus mycoides Rock1-4] gi|228757046|gb|EEM06290.1| hypothetical protein bmyco0002_11500 [Bacillus mycoides Rock1-4] Length = 465 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + ++LV + H+I +P+ I + LL E I+++ + Sbjct: 240 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVTLLKEKHIQEQDQFYFSVIEQEIKR 299 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 K + D + + I + + + +Q+ I S Sbjct: 300 INEIVSEFLILGKPTAIIEKKYDVRDIIKEVSLIIRSEANLHNIIFTLQLPDHPVHIRCS 359 Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ +++LN+ A ++ G +TI V +K + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMSSGDVLTIQVTSNKEHAQLHIIDTGKGI-PKHIQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + +++ + + + L Sbjct: 419 FTSKDTGTGLGLVICKRIIEMYDGQIVIDSTKNKGTTVHIKLP 461 >gi|196035433|ref|ZP_03102838.1| sensor histidine kinase KinD [Bacillus cereus W] gi|195992110|gb|EDX56073.1| sensor histidine kinase KinD [Bacillus cereus W] Length = 498 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVSLLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494 >gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 568 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 74/230 (32%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII 62 L A+ + + H++ +P+ I + +E L + +++I + Sbjct: 338 EQHKLDAMRKEFVANVSHELRTPLATIKSYVETLLYSDVDAEYLKRFLKIIDSETDRMTR 397 Query: 63 RLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + + + + + I ++ + ++++ V + Sbjct: 398 LVKDLLLLSKMDSEDKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQETPRHVYI 457 Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++++NL A P G + + + +N F ++ NG + +I + Sbjct: 458 DKDKMEQVIVNLVTNAIKYTPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLP-RIFER 516 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K + E ++ L Sbjct: 517 FYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566 >gi|154685775|ref|YP_001420936.1| KinD [Bacillus amyloliquefaciens FZB42] gi|154351626|gb|ABS73705.1| KinD [Bacillus amyloliquefaciens FZB42] Length = 499 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 + ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKSEEDQLYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110 + + T + L DI I I V+ + V+ + Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++LN+ A S+ GG+++I ++ ++ + + NG + I Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + + D ++ L Sbjct: 452 FVTSKEKGTGLGLVVCKRIMLMYGGSIDIQSEVDKGTEVTITLP 495 >gi|219853149|ref|YP_002467581.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219547408|gb|ACL17858.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 746 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + N+ ++ + +L I HD + + AI ++EL ED + Sbjct: 504 QEELLNIERLESIGVLAGGIAHDFNNLLSAILGNIELARMDLDEDSPLDERMAEMEQVVL 563 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSR 113 A + + + + LG + + +F V+ Sbjct: 564 RATALTRQLLTFAKGGAPIRRWVHLGPMIKDTAEFTCRGSPVKCSCRVPDDLWITEVDQN 623 Query: 114 ERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++++ N+ + A ++P + + +L +G Sbjct: 624 QISQVINNIVLNAVQAMPDGGILRVTAENSEYDCGEVVPLAAGRYVKIALTDDGPGI-PA 682 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++I D + + + ++ LL + L+ Sbjct: 683 EQVSRIFDPFFTTKTAGSGLGLSTSFSIIRQHNGLLLVVSTPGEGTTFTILIP 735 >gi|150388921|ref|YP_001318970.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149948783|gb|ABR47311.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 467 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 5 ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61 + +L L L S I H++ +P+ + + +E + + +E + + + I Sbjct: 238 LATSLEEQKILRKRLTSDISHELRTPLTILQSHIEAIRDGIWEPTEEKLSICKNEVDRLI 297 Query: 62 IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++ + + D + + ++ Sbjct: 298 KLVGELQNLTDIEKHQIDLQLENCQLSKVIDEVFDGFAYQFQQKQIMFKREIQGDIYMNI 357 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167 + +I++NL A G V++S+++ + +++ G + F + Sbjct: 358 DPDKMKQIIINLLSNALKFTDPEGSVSVSLKEEADRIRLTVEDTGIGIESEDIPYVFERF 417 Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 G+ I L ++ + E + +L + Sbjct: 418 YRGDQSRNRSTGGAGIGLTITRSLVEAHQGTIFVESEKKKGTKFTVILPR 467 >gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14] gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14] Length = 883 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI L+ + +E Q + + + Sbjct: 656 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLMVDTEDMEERRQYMDIVEENND 713 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + VD + DI + + + + Sbjct: 714 LLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKARPNVEILFDRHLPECR 773 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G Q + F + G + Sbjct: 774 IMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLRFYVADTGIGIEPEMQNEIF 833 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + + + L Sbjct: 834 ERFVKLNSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLP 881 >gi|194336406|ref|YP_002018200.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308883|gb|ACF43583.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 680 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 17/221 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSA 60 L A+ L S + H+I +P+ AI + L + ++++ + Sbjct: 458 RQEKLSAMGELASGVAHEIRNPLNAIGILAQRLAIEFSPTADEEEYRQLVRAVVSEVYRV 517 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSR 113 ++ + + L + + + + Sbjct: 518 NAIIQRFLKFARPSKLIMIKSDLDEFMLSYRHLLQGEADAKGIRFSLNTDSGAMVNIDHE 577 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + + LLNL A + GG++T+S+ +N+ + + G E+ +I + Sbjct: 578 QMRQALLNLVQNAVEATEEGGEITVSLFCRENQALIEIVDTGRGIPEKER-ARIFNLYFT 636 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + L Sbjct: 637 TKDEGTGMGLSIANQIIQSHGGIIEIESEEHQGSCFRIKLP 677 >gi|119945449|ref|YP_943129.1| sensor histidine kinase PAS domain-containing protein [Psychromonas ingrahamii 37] gi|119864053|gb|ABM03530.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas ingrahamii 37] Length = 506 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 78/231 (33%), Gaps = 19/231 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + L S L AL + I H+I +P+ ++ + L E G+ E Sbjct: 275 QRKLEVELRQSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFLMEEGLPLEFRTECAKKIQ 334 Query: 51 -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + S + + +D L + +I + V K V K Sbjct: 335 VSLEKASCIIENLLRFSRPSCEQNMVPMDLDTVLCETIMLIANQAKVYKIEIVYLPIGKC 394 Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ +N F+ A ++P GG++ I ++ +E + ++ G Sbjct: 395 SLVSGIFTLLQQVFMNFFLNAINAMPEGGELGIILEQQGDEALVCIRDTGTGILEGAL-D 453 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D S+ + + +++ + + + + LL Sbjct: 454 NIFDPFHTSSPAGKGVGLGLSLCYSIVKQHRGSISVDSMVGKGSTFTVLLP 504 >gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei Go1] gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei Go1] Length = 854 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 60/244 (24%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47 K L + A + + H++ +P+ AI EL+ + + Sbjct: 261 RKQAEEELLQAKIAAESANRSMSEFLATMSHELRTPLTAIIGFSELMLGGSTGEFDELNK 320 Query: 48 EVMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + I S + + M L Y D +I + + Sbjct: 321 KFLGNISTSGKHLLSLINSILDLSKIEAGKMELQSDYFSLQDIFSNTKNILSPLALKKNI 380 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V +I+ NL A +GG V + S+ S+ G Sbjct: 381 SMDFNVEPGFFVYADRTRFKQIMYNLVSNAVKFTQKGGSVEVLGIVSEKGVRVSVSDTGI 440 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E + + + + R+ E + Sbjct: 441 GISKDEIKQ-LFKPFKQIDSTLSRKYEGTGLGLVLSKKFVEMHGGRIWVESEPGKGSTFT 499 Query: 211 ALLE 214 + Sbjct: 500 FEVP 503 >gi|55981692|ref|YP_144989.1| sensor histidine kinase [Thermus thermophilus HB8] gi|55773105|dbj|BAD71546.1| sensor histidine kinase [Thermus thermophilus HB8] Length = 373 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 58/230 (25%), Gaps = 19/230 (8%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSS 57 + L A L + H++ +P+ A+ E +L + + +++ ++ Sbjct: 135 RLAEALEKVEKTRAELIGTVAHELRTPLAALQGYAEGLIDGVLSKEKAAEGILREVKAMR 194 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKI 109 R+ + + + + + + Sbjct: 195 RLVEDLSLVSRVEAKAVEIRPRPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQVW 254 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQ 166 ++L NL A P+GG+V + F + G P F + Sbjct: 255 ADEERVLQVLANLLTNALRHTPQGGEVRLRAFRQGEAVAFQVADTGPGIPEEHLPHIFER 314 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L R+ E + L Sbjct: 315 FYRVDKARSRKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLP 364 >gi|83589978|ref|YP_429987.1| periplasmic sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83572892|gb|ABC19444.1| periplasmic sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 469 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 61/216 (28%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + H++ +P+ I +++LL + +DE + I + + + Sbjct: 250 FVADASHELRTPLTTIRGNVDLLRKVQGQGEAWQDEALADIASEAERMSRLVNDLLTLAR 309 Query: 68 -----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + + L + ++ ++ + ++ L Sbjct: 310 ADAGQEIKREPLEILPLLQEVARQAPLLGTATFTAIGLENLAGVHIMGNRDYLKQLFFIL 369 Query: 123 FMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178 A P GK+ I + + I ++ G + F + + + + Sbjct: 370 LDNAFKYTPSEGKIDLIVNVEPQQRLIIKVRDTGPGIPPRDLEHIFERFYRADATRSSEG 429 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + E + + Sbjct: 430 TGLGLAIARWIVEQHQGHIGVESTVGKGTTFTITIP 465 >gi|325955797|ref|YP_004286407.1| putative histidine kinase [Lactobacillus acidophilus 30SC] gi|325332362|gb|ADZ06270.1| putative histidine kinase [Lactobacillus acidophilus 30SC] Length = 618 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 68/240 (28%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + D S + H++ +P+ ++ +E L + I + +++ + + Sbjct: 366 DVTEQQKNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKFLEVTQQETS 425 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106 I + + V + + I + V Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 485 Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + +++ N+ A P GG +T+ + +KN I S+ G Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNKNHVILSISDQGLGIP 545 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + R+ + + L Sbjct: 546 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605 >gi|228996534|ref|ZP_04156173.1| hypothetical protein bmyco0003_11210 [Bacillus mycoides Rock3-17] gi|228763166|gb|EEM12074.1| hypothetical protein bmyco0003_11210 [Bacillus mycoides Rock3-17] Length = 465 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + ++LV + H+I +P+ I + LL E I+++ + Sbjct: 240 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVTLLKEKHIQEQDQFYFSVIEQEIKR 299 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 K + D + + I + + + +Q+ I S Sbjct: 300 INEIVSEFLILGKPTAIIEKKYDVRDIIKEVSLIIRSEANLHNIIFTLQLPDHPVHIRCS 359 Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ +++LN+ A ++ G +TI V +K + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMSSGDVLTIQVTSNKEHAQLHIIDTGKGI-PKHIQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + +++ + + + L Sbjct: 419 FTSKDTGTGLGLVICKRIIEMYDGQIVIDSTKNKGTTVHIKLP 461 >gi|315644230|ref|ZP_07897400.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315280605|gb|EFU43894.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 460 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 61/234 (26%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK I + S + H+I SP+ +I + L + +E Q + Sbjct: 228 MAKGIAQL---EQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQHYLSIIEAE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D + + W+ +L+ + Sbjct: 285 SRRMSQLSKQLLMLASLDKEENILEKSTFDVAEQIKQVLFHTEWSWRSKELTMDMSLPST 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF---PE 162 ++ NL + G +++ + N + G P Sbjct: 345 YIHGDQQLLHQVWTNLMTNSIKFTAPEGIISLRITGQDNPSCSIEISDTGIGIPPEHLPH 404 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + S + + + R+ + L Sbjct: 405 IFDRFYRVDEARDRSEGSSGLGLAITQKIVQMHGGRIEVTSQPGEGTTFTVTLP 458 >gi|309791780|ref|ZP_07686268.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226186|gb|EFO79926.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 396 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 23/232 (9%) Query: 6 CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIR 54 L +D L + + + H++ +P+ ++ +EL D + + Sbjct: 160 NAALQELDTLKSQFLATLSHELRTPLTSLIGYIELFDRGMLGTLSTPQKEAMGVMRRSCT 219 Query: 55 LSSMSAIIR--LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + S + +R + ++ L + ++ E + Sbjct: 220 ILSQQLNNLLYFQELRSRSFHLRPINMRDLLRQSLILFKERADQAGIRFEVVGSEIAPIL 279 Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + +++ NL A GG V + QD + I ++ NG E +I Sbjct: 280 ADTSGIEQLVRNLIDNAIKFTQAGGWVRVVFQDEPSRLIMRVEDNGIGI-PSEYHERIFL 338 Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + V + + + ++ I V + +L + Sbjct: 339 PFYRVDSSLASGQTGSGLGLAIVQHVINAHGGQITVRSIPGKGSVFTVVLPR 390 >gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 957 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 64/230 (27%), Gaps = 21/230 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 F + M + S + H++ +P+ ++ EL+ + + + + I + Sbjct: 577 TKEFEVDQMK--SEFVSTVSHELRTPLASVLGFTELMLNKTLKEERQKKYLTTIYQEAQR 634 Query: 60 AIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + D L + + +V + + + +S + Sbjct: 635 LTSLINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVM 694 Query: 112 SRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ N+ A P GG VT+ V ++ ++ G Sbjct: 695 GDKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPSEALGQLFTK 754 Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + + + + +L Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804 >gi|150019295|ref|YP_001311549.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905760|gb|ABR36593.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 568 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 27/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQL 52 K+ L L + I H++ +P+ I +++L + G + + Sbjct: 293 KSKEEALELEKLRTEFFANISHELRTPLNIILGVIQILRRDLLDKEKPIDKGKIINNIDI 352 Query: 53 IRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 R + + + + V + + ++ Sbjct: 353 ERQNCFRLLRLINNLIDSTKLDAGHFEIDMINCNIVSVVEEITLSVAGYIINNNINLIFD 412 Query: 102 VSWTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + I ++ +I+LNL G + +++ D + S++ G Sbjct: 413 TDVEEKIIACDPDKIERIMLNLLSNCIKFTDDDGSIFVNIFDGEEYITLSVEDTGIGIPE 472 Query: 161 P-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + VD + + I V L + + E + L Sbjct: 473 EKVEIIFDRFRQVDKSFTRNYEGSGIGLSLVKSLVEMHDGTISVESKYGVGTKFTIKLP 531 >gi|229139286|ref|ZP_04267858.1| hypothetical protein bcere0013_23960 [Bacillus cereus BDRD-ST26] gi|228644142|gb|EEL00402.1| hypothetical protein bcere0013_23960 [Bacillus cereus BDRD-ST26] Length = 579 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 392 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTNSKDIIIEC 451 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 556 >gi|227879007|ref|ZP_03996903.1| histidine kinase [Lactobacillus crispatus JV-V01] gi|256844226|ref|ZP_05549712.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849374|ref|ZP_05554807.1| two-component system response regulatory system histidine kinase [Lactobacillus crispatus MV-1A-US] gi|262047879|ref|ZP_06020827.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380063|ref|ZP_06626159.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus 214-1] gi|295691936|ref|YP_003600546.1| sensor protein [Lactobacillus crispatus ST1] gi|227861396|gb|EEJ69019.1| histidine kinase [Lactobacillus crispatus JV-V01] gi|256613304|gb|EEU18507.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714150|gb|EEU29138.1| two-component system response regulatory system histidine kinase [Lactobacillus crispatus MV-1A-US] gi|260571823|gb|EEX28396.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290923377|gb|EFE00284.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus 214-1] gi|295030042|emb|CBL49521.1| Sensor protein [Lactobacillus crispatus ST1] Length = 617 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 28/239 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58 ++ + D S + H++ +P+ ++ +E L+E I + +++ + + Sbjct: 366 DVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKFLEVTQQETS 425 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106 I + + V + + I + V Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRE 485 Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ N+ A P GG +T+ + ++N I S+ G Sbjct: 486 LGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQGLGIPR 545 Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + ++ + + L Sbjct: 546 KDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLP 604 >gi|206973556|ref|ZP_03234474.1| hypothetical protein BCH308197_2608 [Bacillus cereus H3081.97] gi|206747712|gb|EDZ59101.1| hypothetical protein BCH308197_2608 [Bacillus cereus H3081.97] Length = 595 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTNSKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572 >gi|217960096|ref|YP_002338654.1| hypothetical protein BCAH187_A2703 [Bacillus cereus AH187] gi|222096161|ref|YP_002530218.1| sensor histidine kinase [Bacillus cereus Q1] gi|217066659|gb|ACJ80909.1| hypothetical protein BCAH187_A2703 [Bacillus cereus AH187] gi|221240219|gb|ACM12929.1| sensor histidine kinase [Bacillus cereus Q1] Length = 595 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTNSKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572 >gi|312977020|ref|ZP_07788769.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05] gi|310896348|gb|EFQ45413.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05] Length = 620 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 28/239 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58 ++ + D S + H++ +P+ ++ +E L+E I + +++ + + Sbjct: 369 DVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKFLEVTQQETS 428 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106 I + + V + + I + V Sbjct: 429 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRE 488 Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ N+ A P GG +T+ + ++N I S+ G Sbjct: 489 LGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQGLGIPR 548 Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + ++ + + L Sbjct: 549 KDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLP 607 >gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 632 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 71/243 (29%), Gaps = 31/243 (12%) Query: 3 KNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQ 51 KN +L + L+A + + H++ +P+ AI ++L + D+ ++ Sbjct: 385 KNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNLNDKELK 444 Query: 52 LIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------V 96 + S K + ++ G D I D ++ ED Sbjct: 445 YVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLIAKKNLS 504 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + + +I+ NL A P G + I+ + + S+K G Sbjct: 505 FECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNFQVSVKDTGI 564 Query: 157 LARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 D + + + V + + E + Sbjct: 565 GIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGKGSTFTF 624 Query: 212 LLE 214 ++ Sbjct: 625 VIP 627 >gi|239826363|ref|YP_002948987.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. WCH70] gi|239806656|gb|ACS23721.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. WCH70] Length = 744 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 K + L +++V L + I H+I +P+ A+ ++LL + ++ Sbjct: 502 RKEMELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSIKEDYSMYFNVIMSE 561 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111 I +F+ LA ++ + + ++ + + Sbjct: 562 LKRIESIITEFLVLAKPQAIQFQQNDVCKIMQDTIDLISAQATMHNVQIVADFAPHVPFI 621 Query: 112 SRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E ++ + ++ K + + S+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGEVTVRINRLDDSHIRISITDQGCGI-PQDKIKKL 680 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ ++ E D L Sbjct: 681 GQPFYTTKERGTGLGLMVSYKIIEEHQGKIDVESEVDVGTTFHITLP 727 >gi|218782891|ref|YP_002434209.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218764275|gb|ACL06741.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 479 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 17/221 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63 L A+ L + + H++ +P+ + S L+ E + E + L++ ++ Sbjct: 252 DQEKLSAIGRLAAGVAHELNNPLTTVLTSTMLIQEDMDPKHPDYEELDLVKNETLRCRNI 311 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + L +I Q + + + ++ EK+ + +R +I Sbjct: 312 VNNLLNFARQSKPIKQDADLNEIVQSSMALIRKQADFKNIVMKCDTCPEKLMVYCDRDQI 371 Query: 119 LLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 L + ++ D + S+ G I + Sbjct: 372 QQCLINLGLNAIDATAPGGRITFSTALADDEKMARISVADTGEGLPLN-IQDSIFEPFFT 430 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + E H + L Sbjct: 431 TKETGTGLGLSITHGFVKQHKGFIGLESTQGHGATFTIRLP 471 >gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 568 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 74/230 (32%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII 62 L A+ + + H++ +P+ I + +E L + +++I + Sbjct: 338 EQHKLDAMRKEFVANVSHELRTPLATIKSYVETLLYSDVDAEYLKRFLKIIDSETDRMTR 397 Query: 63 RLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + + + + + I ++ + ++++ V + Sbjct: 398 LVKDLLLLSKMDSEEKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQEVPRHVYI 457 Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++++NL A P G + + + +N F ++ NG + +I + Sbjct: 458 DKDKMEQVIVNLVTNAIKYTPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLP-RIFER 516 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K + E ++ L Sbjct: 517 FYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566 >gi|222054816|ref|YP_002537178.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. FRC-32] gi|221564105|gb|ACM20077.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. FRC-32] Length = 361 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMS 59 + L +L L + + H+I +P+G I + +LL+ ++ +++ ++ + Sbjct: 130 QADRLSSLGALAAGLAHEIKNPLGGIKGAAQLLEMELPDNPELRDYTRVMLKEVQRVNRI 189 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 L V+ LGDI + + + + + I Sbjct: 190 VEDLLALASPRKLELSKVNLHKVLGDILLLQKRAVDGRRITFIQQFDPSIPPILADESLL 249 Query: 116 AKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEK 163 ++ LNL A ++ GG+ + + + +G E Sbjct: 250 TQLFLNLIKNAVEAVGDGGQVKVKSRILSDYSMMPKGEGRSRLVAIDVCDDGPGIDKEEL 309 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + +L Sbjct: 310 -DHLFTPFYTTKSKGTGLGLAICQKIIAEHRGMIRVDSEPGKGTAFTVMLP 359 >gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] Length = 639 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 19/233 (8%), Positives = 63/233 (27%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 N L ++ + L + + H++ +P+ +I +EL+ + + + +Q+ + Sbjct: 404 NELKELDNLK--SELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQRKCLQVADDNI 461 Query: 58 MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ + + + + + + + + V Sbjct: 462 VRLRRLIESMLDLSKIERGELEMYREKVNICEIVGDVIQYLKPLATEKNIKLNKNVE-KI 520 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++L NL A P + ++ + +G + Sbjct: 521 TLEADKDRITQVLTNLIENAIKFSPANESILVNGTLEDEGLHLKVTDHGAGIPKKDMEKV 580 Query: 164 FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + E +L Sbjct: 581 FDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHGGSIWVESELGKGSTFHIILP 633 >gi|328954099|ref|YP_004371433.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328454423|gb|AEB10252.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 623 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 78/236 (33%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEV 49 + + + S L +L L S + H+I +P+ ++ LE ++ E + + Sbjct: 373 LKETQQAAVRSQQLASLGQLASGVAHEIRTPLTSLKLFLESIENEITISPEYEEDFQVAM 432 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 Q+ R+ + Y+ + + + + ++ S + Sbjct: 433 NQIRRMEATINRFLDFARPREPVYSWLEVGDLLEDALLIIGPRARLQETTIRKSLSPSLP 492 Query: 110 DLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLA 158 + +R ++ LLNL + A ++P+ G++T++ + + + Sbjct: 493 KIKGDRKQLGEALLNLMVNALEAMPQRGRLTVAAHPGELPGTDGSRPCVVIDISDTSPGI 552 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E ++ + + + V + ++ + S + Sbjct: 553 Q-GENIGRLFEPFFTTKATGAGLGLSIVSSTVQRHGGEVMVRSVVGRGTTFSVFIP 607 >gi|296329677|ref|ZP_06872162.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674074|ref|YP_003865746.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153175|gb|EFG94039.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412318|gb|ADM37437.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 738 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 73/227 (32%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------Q 51 K + L D +V L + I H+I +P+ A+ ++LL D + + Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSE 560 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L R+ S+ + A Y + I I+ + + ++ + + + Sbjct: 561 LKRIESIITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQIHLDLIDDIPPI 620 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167 E ++ + ++ ++ + SL+ G +K ++ Sbjct: 621 YCEPNQLKQVFINILKNAIEVMPDGGNIFVTIRTLDQDHVLISLRDEGIGM-TEDKLKRL 679 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ ++ E + V L Sbjct: 680 GEPFYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHLTLP 726 >gi|254760494|ref|ZP_05212518.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] Length = 499 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 72/226 (31%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 252 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 311 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 312 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 371 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ I S+ G E+ ++ + Sbjct: 372 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKYGIIISVIDKGIGI-PAERIKRLGE 430 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 431 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 476 >gi|302036330|ref|YP_003796652.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604394|emb|CBK40726.1| putative Histidine kinase, contains GAF domain [Candidatus Nitrospira defluvii] Length = 1002 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 61/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 + ++ + L +L + H+I +P+ +I ++L E + E M+ Sbjct: 716 LRRSQLLMRRTDRLRSLETMAGGFAHEIRNPLTSIKTFVQLAPERRDDVEFMEQFSQVVC 775 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKI 109 L + R + + + +Q + Sbjct: 776 EDVERIERLVHEILDYARYMTPKLTQESLNDVVSSCLYFIEVKASSKAITIQKELASDLP 835 Query: 110 DLSRERAKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLAR 159 + +R +I L + ++ + ++ ++ +G Sbjct: 836 YVRLDRQQIKQVLLNLFINAMEAIGGDQGGRLSVRTRKLVKAVNEPWVQIEVEDSGPGID 895 Query: 160 FPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I D + + + + E+ + H L Sbjct: 896 PQDL-DHIFDPFYTTKHESGEREGTGLGLTIAHQIVQEHGGYVEVASEVGHGTRFMVNLP 954 >gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 996 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 65/243 (26%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 +A+ + + D A L S + H+I +P+ AI LELL+ + V+ +R Sbjct: 487 LARELTAARHAADSANAAKSAFLAS-MSHEIRTPLNAILGHLELLERLPQAAPVVARVRT 545 Query: 56 SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKR 99 + S+ L+ + + D+ + + Sbjct: 546 VASSSRALLQILNDILDFSKVEAGEMSFESIRFDAADLVRQATSMFMPLAQRKGLALTHT 605 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGN 156 + + + ++++NL A RG N I + G Sbjct: 606 IDAALPRYYLGDPGRIRQMVVNLLSNAIKFTDRGSVSIEVSAGKGNPAIPLVIRVTDTGI 665 Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + +A + + + + Sbjct: 666 GIPAKRQARVFDAFDQIDASITRRFGGTGLGLALCKRIAEGMGGTIEMSSEEGQGSIFTV 725 Query: 212 LLE 214 L Sbjct: 726 TLP 728 >gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 968 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + K + +L + S + H+ +P+ AI +S ELLD + Q I+ Sbjct: 733 LEKERELS----ELRSSFVSLVSHEFRTPLTAILSSSELLDRYSKKLTDEKKKAHHQRIQ 788 Query: 55 LSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ L + + + D Q+ V Sbjct: 789 IAVSRMTQLLDDVLTIGKAEAGKLTFKPASMNLIAFCQDIVDTLQMSISQQHSINFVCHG 848 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 G+ + IL NL A +G +V + + IF ++ G + Sbjct: 849 DCGDAQMDEKLLQHILNNLISNAIKYSSQGSEVKVELTCEGESAIFHIQDQGIGIPPEDI 908 Query: 164 ---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F+ TI + V + + E + +L Sbjct: 909 KKLFSSFQRAGNVGTIQGTGLGLAIVKKCVDLHGGLITVESEVGKGTTFTIILP 962 >gi|291288730|ref|YP_003505546.1| GAF sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885890|gb|ADD69590.1| GAF sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 389 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 17/226 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56 M K+ + V +L S I HDI + + + + LEL+D E + I Sbjct: 158 MRKSENLRV-----VGMLNSSIAHDIKNLLNIVQSYLELMDMEEGLNPEMREYIDAIHSE 212 Query: 57 SMSAIIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + ++ + + ++ + V Sbjct: 213 VKRIHGLTLDLLDFSRQRVTINIETFRISELFTEIAKHANIMTKDTDIVVEVTALDDLTM 272 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +++ NL A +L GKV ++ + + +F ++ G Sbjct: 273 KVDRGKIFRVIFNLVSNAIDALGCSGKVRLTAEQDSDFCVFRVRDTGKGVPKEHLAKLFQ 332 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + + + + + Sbjct: 333 PFFSSGKHKGTGLGLAIVQMIVEAHNGTIEVDSAEGLYTEFTVRIP 378 >gi|42781721|ref|NP_978968.1| hypothetical protein BCE_2662 [Bacillus cereus ATCC 10987] gi|42737644|gb|AAS41576.1| hypothetical protein BCE_2662 [Bacillus cereus ATCC 10987] Length = 595 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDELSTEKKNLYQIFKNVVSLINTKAIMTNIQVELYADSKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I ++ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIINVIDKGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572 >gi|323168623|gb|EFZ54303.1| signal transduction histidine-protein kinase atoS [Shigella sonnei 53G] Length = 597 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 74/226 (32%), Gaps = 16/226 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + + L L L + + H++ +P+ AI +++L + + + Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + L+F R V + + +++ + +S ++ Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492 Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLN+ + A ++ + Q S ++ S++ NG + Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D + + + + ++ + + + + + Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLI 597 >gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8] Length = 618 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFM----- 67 S + H++ +P+ ++ + E L + ++ +++I+L S I + + Sbjct: 381 FVSNVSHELRTPLTSVKSYSEALLDGALQDTSLAQPFLEVIQLESNRMIRMVSNLLDLSK 440 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDLSRERA 116 VD + I +E R Sbjct: 441 IDGGQIILQKDLVDFKRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRDIYVDIDQDRMT 500 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN-- 171 +++ NL A P GGK+TI ++D+++ IFS+ G F + + Sbjct: 501 QVIDNLINNAIKYSPDGGKITIGLEDNRDSVIFSVSDQGLGISQVDAEHLFERFYRVDKA 560 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E I++ S L Sbjct: 561 RSREQGGSGLGLAISKEVVELHGGRIWVESIENEGSTFSFELP 603 >gi|291483900|dbj|BAI84975.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 500 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + ++ ++L+ L + H+I +P+ I ++LL + + +I Sbjct: 273 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 331 Query: 58 MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108 K + D + + I + V+ +Q Sbjct: 332 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 391 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++LN+ S+P GGK+TIS+ + I + NG E I Sbjct: 392 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 450 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + E ++ L Sbjct: 451 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTKVTITLP 496 >gi|323527929|ref|YP_004230081.1| histidine kinase [Burkholderia sp. CCGE1001] gi|323384931|gb|ADX57021.1| histidine kinase [Burkholderia sp. CCGE1001] Length = 584 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 69/264 (26%), Gaps = 50/264 (18%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISP------------------IGAIHNS---- 36 +A+ L S L ++ L + + H+I +P + A+ Sbjct: 311 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYVADLLTALAAYERTE 370 Query: 37 LELLDEVGIEDEVMQLIRLSS-----------------MSAIIRLKFMRLAFGYTGSVDS 79 EL+ E ++ ++ ++ + Sbjct: 371 AELIAESRATLAALKREIDIDYLRTDIPALLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 430 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEK------IDLSRERAKILLNLFMVAHASLPRG 133 L + + + + + E + + ++ +NL M A S+ Sbjct: 431 WANLESNLDTTINIVWNELKYKADLKREFGAIPELECIPSQLNQVFMNLLMNAAQSIEGH 490 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191 G +T+ ++ G PE +I D + + + Sbjct: 491 GHITVRTGHDDTSVWVEVEDTGQGI-RPEHRDRIFDPFFTTKPVGTGTGLGLSISYGIVR 549 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + R+ +L K Sbjct: 550 KQGGRIEVRSEVGQGSTFRVVLPK 573 >gi|319649833|ref|ZP_08003984.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317398413|gb|EFV79100.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 614 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 13/225 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M + + + ++ ++ L + I H+I +P+ A+ ++LL++ ED + Sbjct: 384 MEEQLRKS-DTLHVIGELAAGIAHEIRNPMTALKGFIQLLEDSVKEDHTMYFNVITTELS 442 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110 I +I K + F + D+ V R Sbjct: 443 RIDSIINEFLILAKPQAVKFVEKDISQIMKETVDLLSAQAVLHNVQFRTYYEKNLPNVFC 502 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVD 169 S + K+ +N+ A +P+GG +T+S+Q ++ S++ G + ++ + Sbjct: 503 ESNQMKKVFINIIKNAIEVMPKGGYITVSIQKGFDHKVHISIRDEGTGIPAHKIK-KLGE 561 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+K + E V L Sbjct: 562 PFYTTKERGTGLGLMVTYKIIEEHKGTIEVESKLGEGTVFHIHLP 606 >gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463] Length = 619 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ +E L + I + +++ + + I + + Sbjct: 380 QFISNVSHELRTPLTSLQAYIEALNEEAWKDPEIAPKFLEVAQQETSRMIRMINDLLSLS 439 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112 V + I + V + Sbjct: 440 RMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 499 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + +++ N+ A P GG +T+ + S+ I S+ G + F + Sbjct: 500 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 559 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + L Sbjct: 560 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 606 >gi|163790939|ref|ZP_02185362.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7] gi|159873781|gb|EDP67862.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7] Length = 614 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 69/224 (30%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++ + LE L + I + +++ + + I +K + Sbjct: 381 FVSNVSHELRTPLTSMRSYLEALLDGAWKDPEIAPQFLEVTQEETDRMIRMIKDLLELSR 440 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----------------RER 115 + L + D + + + + + + + Sbjct: 441 MDSNKSVLDLEYLNVNELFDHVIKRFEMMLQSSDKTMKEFSIKREFTKSQLWVEVDADKM 500 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++L N+ A P GG +T + ++ IFS+ G + Sbjct: 501 IQVLDNIMNNAIKYSPDGGTITCGLVETNTSVIFSISDEGLGIPKRDLANVFDRFFRVDK 560 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + ++K ++ E + L Sbjct: 561 ARARSMGGTGLGLAISKEVVQKHKGKIWAESTEGKGTTFYISLP 604 >gi|323360122|ref|YP_004226518.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] gi|323276493|dbj|BAJ76638.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] Length = 539 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 24/236 (10%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60 + L A L + + H++ +P+ +I L+L LD+ I E + + ++ +A Sbjct: 298 SRDVTAEEQALRARDDLVASVSHELRTPLTSIIGYLDLALDDPAIIAETRERLEVAERNA 357 Query: 61 IIRLK------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104 + M A + D + DI ++ I + Sbjct: 358 TRLRELVSDILSMSAASRHGAEFDLVPTDTDIAAIVRAAIESQQPRAADHGIRIDSSGLR 417 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 G R +++ NL A RGG VT++V S+ ++ +G E Sbjct: 418 DGSAHVDPRRLRQVVDNLISNAIKYNVRGGTVTVAVDVSETAVQIAVADDGPGISRTEQG 477 Query: 163 -KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ + + + + L + Sbjct: 478 RVFDRFFRGDAVRNSSTHGSGLGLAISRDIVRAHGGEITVSSALGTGATFIVRLPR 533 >gi|197122378|ref|YP_002134329.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] gi|196172227|gb|ACG73200.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] Length = 747 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 17/230 (7%), Positives = 57/230 (24%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L AL + + + H+I +P+ AI +++ LD + ++ + + + Sbjct: 474 ERDRLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVNRLNGVV 533 Query: 68 RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Y+ + L ++++ + R+++ + + ++ Sbjct: 534 TQFLDYSRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQLKQ 593 Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164 +A + + + G + Sbjct: 594 VFLNLALNAFQAMPHGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGI-PDDAR 652 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + ++ L Sbjct: 653 ESIFVPFYTTKEKGTGLGLAICQRIVKAQQGTIVVRSAPGEGAEFLIALP 702 >gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 637 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAI 61 ++I + + S + H++ +P+ A+ E +LD D+ + +R++ + Sbjct: 405 RDITERKEMEQMKDEMISAVSHEMRTPLTAMLGYTEFMLDNEVPADQQREYLRITLHESE 464 Query: 62 IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108 + R + L + + S Sbjct: 465 KLNELIGNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITLDCPSDLPRI 524 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ ++ NL A P+GG V ++ + K+ + +++ G +I Sbjct: 525 CGDNKQLRQVFNNLVSNAVKYSPKGGAVRVAARREKDCVVITVRDEGIGISPQAV-ERIF 583 Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E L Sbjct: 584 ERFYRVNNTACRVFGGTGLGLALVREIVTAHGGEVWVESTLGKGSTFFVSLP 635 >gi|297568592|ref|YP_003689936.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] gi|296924507|gb|ADH85317.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] Length = 601 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 21/231 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 M K + LVAL + + + H+I +P+ +I LL + E E +L+ Sbjct: 373 MEKEVQ---RHERLVALGKMAAGVAHEIRNPLSSIKGLATLLASRAGQNPPESETARLLV 429 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 L F R VD LG+ Q++ + + Sbjct: 430 GEVERVNRSISELLDFARPQPLNRRPVDLPTLLGNSLQLVAADAQSLGVELKLQPPATEF 489 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++LLNL++ + ++P + + + + + G PE Sbjct: 490 PPVPVDADRLTQVLLNLYLNSLQAMPTGGRLEANLEYRPEQQVVRIKVSDTGQGI-APEI 548 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + V + ++ ++ D ++ L Sbjct: 549 LPRITDPYFTTKPEGSGLGLALVQKIIDDHGGKMEFTSQPDQGTTVTITLP 599 >gi|308173326|ref|YP_003920031.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606190|emb|CBI42561.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] Length = 739 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 AK + L D +V L + I H+I +P+ A+ ++LL E + Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEHSLYFNVITSE 561 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111 I +F+ LA + ++ + V+ ++ ++ TG + Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621 Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E ++ + ++ K+ + SL+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNFYVTIQPSDKDHILISLQDEGTGM-SEDKLKRL 680 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ R+ E + V L Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727 >gi|189426123|ref|YP_001953300.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422382|gb|ACD96780.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 378 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 S L L + + + H++ +P+ ++ + E+L + + E +++ + Sbjct: 153 EEQLRRSERLSTLGEMAAVLAHEVRNPLASLRGTAEILRDDFRPGTPKHEFVEIQIKETE 212 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKID 110 ++ + + + I + + R + + Sbjct: 213 RLNRVVEEFLRMARQQPGELQRCVVAEELETIVTLTSNEARRRKVTLQLEAANRDLAVNA 272 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LN+ + A + P GG+VTI+VQ + + +G E +I + Sbjct: 273 DGEKLRQAFLNIILNALQATPEGGRVTIAVQPQQQNCEIRISDSGPGIN-DEIRQRIFEP 331 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + L E + L Sbjct: 332 FFTTKPDGTGLGLAVTKKIIEAHGGSLSVESAAGSGTTMVVQLP 375 >gi|15614483|ref|NP_242786.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10174538|dbj|BAB05639.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 548 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 65/227 (28%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 + + A+ L + + H+I +P+ I + LL + ++++ Sbjct: 312 EQQVIQNEKFSAIGRLSAGLAHEIRNPLTPIIGFVNLLKNESHLDEKAKQYLRIMSDELE 371 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKI 109 + + L + + + F+ + + T E + Sbjct: 372 RVRKLVNDFVIVSKPEPPELKKTSLHTLVEQVIRFMESQGSLHNVQMEVNHSIDETDELL 431 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167 + + ++L+NL A ++ RGG + + ++ G + + Sbjct: 432 VDASQMKQVLINLLTNAMDAMERGGTIRVETGKDLGNGMFSIKVQDEGCGMSEDQLNQ-L 490 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + + + LL Sbjct: 491 FNPFFTTKDDGLGLGLSICYRIIKNHGGTINVVSQQGEGSTFEILLP 537 >gi|84684959|ref|ZP_01012859.1| phosphate regulon sensor histidine kinase, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667294|gb|EAQ13764.1| phosphate regulon sensor histidine kinase, putative [Rhodobacterales bacterium HTCC2654] Length = 341 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 58/234 (24%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64 + ++ + + + H++ +P+ AI +E L + + ++++ + + Sbjct: 106 EAGEMRSEFVANVSHELRTPLTAISGFVETLRGPARDDAAAREHFLKIMESETRRMHRLV 165 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSWTGEKIDLS 112 + + + A++ Sbjct: 166 DDLLSLAKVEDTEGLRPTEQQDVAELLLNAALNLQGQADDRLVQLHVRGCDAPVMAPADP 225 Query: 113 RERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 + ++ NL A +V + I ++ G Sbjct: 226 DQLTQVFTNLIENAIKYGGSGGEVTVTLSQVQHDPRLRGPGLIVAVTDKGEGIDERHLGR 285 Query: 164 -FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL E S L Sbjct: 286 LTERFYRVDDHRSRGMGGTGLGLAIVKHIVNRHRGRLRIESTPGQGSTFSVALP 339 >gi|299541797|ref|ZP_07052120.1| two-component sensor histidine kinase [Lysinibacillus fusiformis ZC1] gi|298725535|gb|EFI66176.1| two-component sensor histidine kinase [Lysinibacillus fusiformis ZC1] Length = 621 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 64/235 (27%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + + + S + H++ +P+ + + LE L + I + + + Sbjct: 379 TEQEKIEMDRRE----FVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPTFLNVTQTE 434 Query: 57 SMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWT 105 + I + + + + + + I + + + Sbjct: 435 TERMIRLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDKVQFERLFPETS 494 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++ N+ A P GG + + + +G E Sbjct: 495 FYVEIDTDKITQVIDNIISNAIKYSPDGGNIRFGFTGQDDMLKVMISDDGMGI-PKENVG 553 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D ++ + + + ++ E + + L Sbjct: 554 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608 >gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 883 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI L+ + +E Q + + + Sbjct: 656 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLMVDTEDMEERRQYMDIVEENND 713 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + VD + DI + + + + Sbjct: 714 LLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKARPNVEILFDRHLPECR 773 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G Q + F + G + Sbjct: 774 IMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLRFYIADTGIGIEPEMQNEIF 833 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + + + L Sbjct: 834 ERFVKLNSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLP 881 >gi|229120973|ref|ZP_04250215.1| hypothetical protein bcere0016_12820 [Bacillus cereus 95/8201] gi|228662633|gb|EEL18231.1| hypothetical protein bcere0016_12820 [Bacillus cereus 95/8201] Length = 486 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFYPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482 >gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 590 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLK---------- 65 + + H++ +P+ +I E L + I+D V+ Q + + Sbjct: 366 FVANVSHELKTPVTSIKGFAETLLDGAIDDPVLSKQFTEIIWKESDRLQMLIVDLLELSK 425 Query: 66 ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 +L D + ++ + + + +Q + + +++LN Sbjct: 426 IENAQFKLDLEDMSLKDITEDVFELVRGKAEEKGMHLHIQEQGSSVIEGDWQRLKQVVLN 485 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176 L A + P GG VT+++++ K+ + ++ G E F + Sbjct: 486 LVSNAISYTPSGGHVTVALKEQKDAVVLKVQDTGIGIDPKETLRIFERFYRVDRARSRNS 545 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V LA + ++ + + S K Sbjct: 546 GGTGLGLAIVKHLAEAHHAKIEVQSEEGKGTEFSLTFPK 584 >gi|228945032|ref|ZP_04107393.1| hypothetical protein bthur0007_11980 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814701|gb|EEM60961.1| hypothetical protein bthur0007_11980 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 486 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 63/223 (28%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111 + + T +++ + I + I + + Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVSLIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482 >gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] Length = 960 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++I + + L S + H++ +P+ +I EL+ + +++ ++ I + Sbjct: 570 RDITKQHEVEQMKSELVSTVSHELRTPLSSILGFTELMLHRKLKPEKQEKYLKTIHKEAN 629 Query: 59 SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEK 108 + S+D + ++ E + + ++ Sbjct: 630 RLTNLINDFLDLQRMESGGQMYTNESLDIRDLISEVLTRFEAYSEKHTLHFINLAEKTII 689 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 S +++ N+ A P GG +T ++ + S+K +G E Sbjct: 690 QGDSERIQQVITNIISNAIKFSPNGGDITTTLASNSTSLFVSVKDDGLGIPENEMKNLFR 749 Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E ++ L Sbjct: 750 KFYRIDNSDRKKIGGTGLGLPICKEIVEAHNGTISVESKENEGSTFIIELP 800 >gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 882 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI L+ + +E Q + + + Sbjct: 655 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLMVDTEDMEERRQYMDIVEENND 712 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + VD + DI + + + + Sbjct: 713 LLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKARPNVEILFDRHLPECR 772 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G Q + F + G + Sbjct: 773 IMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLRFYIADTGIGIEPEMQNEIF 832 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + + + L Sbjct: 833 ERFVKLNSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLP 880 >gi|228933922|ref|ZP_04096765.1| hypothetical protein bthur0009_23820 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825618|gb|EEM71408.1| hypothetical protein bthur0009_23820 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 590 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567 >gi|228946252|ref|ZP_04108582.1| hypothetical protein bthur0007_23990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813423|gb|EEM59714.1| hypothetical protein bthur0007_23990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 590 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567 >gi|228927693|ref|ZP_04090742.1| hypothetical protein bthur0010_23990 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229125029|ref|ZP_04254194.1| hypothetical protein bcere0016_53000 [Bacillus cereus 95/8201] gi|228658405|gb|EEL14080.1| hypothetical protein bcere0016_53000 [Bacillus cereus 95/8201] gi|228831943|gb|EEM77531.1| hypothetical protein bthur0010_23990 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 590 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYADSKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567 >gi|228915253|ref|ZP_04078847.1| hypothetical protein bthur0012_24730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229091649|ref|ZP_04222850.1| hypothetical protein bcere0021_24540 [Bacillus cereus Rock3-42] gi|229184867|ref|ZP_04312058.1| hypothetical protein bcere0004_24250 [Bacillus cereus BGSC 6E1] gi|228598520|gb|EEK56149.1| hypothetical protein bcere0004_24250 [Bacillus cereus BGSC 6E1] gi|228691594|gb|EEL45346.1| hypothetical protein bcere0021_24540 [Bacillus cereus Rock3-42] gi|228844370|gb|EEM89427.1| hypothetical protein bthur0012_24730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 579 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 392 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 451 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 556 >gi|218903769|ref|YP_002451603.1| sensor histidine kinase [Bacillus cereus AH820] gi|218538418|gb|ACK90816.1| sensor histidine kinase [Bacillus cereus AH820] Length = 595 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYADSKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572 >gi|49479191|ref|YP_036745.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118478020|ref|YP_895171.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196032103|ref|ZP_03099517.1| sensor histidine kinase [Bacillus cereus W] gi|196040421|ref|ZP_03107722.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196043690|ref|ZP_03110928.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225864620|ref|YP_002749998.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|301054173|ref|YP_003792384.1| sensor histidine kinase [Bacillus anthracis CI] gi|49330747|gb|AAT61393.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118417245|gb|ABK85664.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|195994854|gb|EDX58808.1| sensor histidine kinase [Bacillus cereus W] gi|196025999|gb|EDX64668.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|196028906|gb|EDX67512.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|225787029|gb|ACO27246.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|300376342|gb|ADK05246.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 595 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572 >gi|52142860|ref|YP_083969.1| sensor histidine kinase [Bacillus cereus E33L] gi|51976329|gb|AAU17879.1| sensor histidine kinase [Bacillus cereus E33L] Length = 595 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572 >gi|89895321|ref|YP_518808.1| hypothetical protein DSY2575 [Desulfitobacterium hafniense Y51] gi|89334769|dbj|BAE84364.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 601 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 ++I +L + + + H++ +P+ I LE + + + E + L+ + Sbjct: 371 RDITASLRAEKERRDFMASVTHELRTPLHLIQGYLEAIQDGVIAKEEQTEHIDLVLEEAK 430 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----I 109 + ++ + G I+++ F + + + Sbjct: 431 RLAKLVMELQELDRFESWKNFEKKEIDLAGFIQELGYRFQGRADELGIHLQMDNGKGVIH 490 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 ++ +NL A P G V I + DS+ F+++ G P F + Sbjct: 491 ANRDRLLQVFINLIENAFRHTPEGKSVYIRIIDSEEHIQFNVEDQGEGIPPQALPHIFDR 550 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V+L+ + + E +L K Sbjct: 551 FYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFKVILPK 601 >gi|317151840|ref|YP_004119888.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942091|gb|ADU61142.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 551 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 27/233 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIEDEV--------MQLIR 54 + S + AL L + + H++ +P+ I L ++L + + + +I Sbjct: 317 MQSSKMAALGKLAAGVAHEVNNPLTLIREGAGWLKDMLADEDPQTMKNHAEFARSLDMIE 376 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKI 109 L A M + + L I + ++ + + + +G Sbjct: 377 LHVDRAREVTHRMLGFGRRMEPLQENVDLNVLAEQTIRFLRQEALHRNIAITTDMSGNLP 436 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKF 164 ++ + ++ + + +L G+ + + S++ G E Sbjct: 437 RVTTDGNQLQQVILNILDNALDAVGQQGEIWVGTGTDDERDEVFLSIRDTGPGMPC-ETM 495 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + + + + + + L + Sbjct: 496 EHIFEPFYTTKAVGEGTGLGLSICFSIIEKLGGHIEVQSAQGEGSTFTIRLPR 548 >gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 609 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 69/218 (31%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ + + LE L + I + + + R + I + + Sbjct: 382 FVANVSHELRTPLTTMRSYLEALAEGAMHDEDIAPQFLNVTRTETERMIRMVNDLLQLSK 441 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 R+ + VD + D ++ +R + +++ N Sbjct: 442 LDSKDYRMKKEWVNFVDFFNRIIDRFDFSKEQNVTFQRNLPEHAAFVEIDEDKLTQVVDN 501 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P GG+V+ ++ + + + + + G F + + + Sbjct: 502 IISNALKYSPEGGQVSFNIVEQEEQLLIRISDQGVGIPKDNLDKVFERFYRVDKARTRKL 561 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ E + +S L Sbjct: 562 GGTGLGLAIAKEVVEAHDGKIWAESTEGKGTTISFTLP 599 >gi|219669755|ref|YP_002460190.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219540015|gb|ACL21754.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 601 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 ++I +L + + + H++ +P+ I LE + + + E + L+ + Sbjct: 371 RDITASLRAEKERRDFMASVTHELRTPLHLIQGYLEAIQDGVIAKEEQTEHIDLVLEEAK 430 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----I 109 + ++ + G I+++ F + + + Sbjct: 431 RLAKLVMELQELDRFESWKNFEKKEIDLAGFIQELGYRFQGRADELGIHLQMDNGKGVIH 490 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 ++ +NL A P G V I + DS+ F+++ G P F + Sbjct: 491 ANRDRLLQVFINLIENAFRHTPEGKSVYIRIIDSEEHIQFNVEDQGEGIPPQALPHIFDR 550 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V+L+ + + E +L K Sbjct: 551 FYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFKVILPK 601 >gi|308051303|ref|YP_003914869.1| integral membrane sensor signal transduction histidine kinase [Ferrimonas balearica DSM 9799] gi|307633493|gb|ADN77795.1| integral membrane sensor signal transduction histidine kinase [Ferrimonas balearica DSM 9799] Length = 692 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLI 53 + + +++ LVAL L + I H+I +P I ++EL+ + + ++LI Sbjct: 441 LEETRQQMVTNEKLVALGELTAGIAHEINNPTAVILGNIELIKMELSDQDHDLNEEIELI 500 Query: 54 RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104 ++ + L ++ ++ + + + Sbjct: 501 VQQVQRINSIIQSLLQYSRPGDLAMPLERQPVNPILEEMLVLVRHSLRKQMVDVELDLGA 560 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159 + ++ ++L+NL + A +L G+V D ++ +G Sbjct: 561 SALVEVNRQQLLQVLINLVVNAAHALEGAGQVRVASGDWMDGDQPKGVWITVADDGCGI- 619 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I D + + + L E V + L Sbjct: 620 APEVLSRIFDPFFTTRKQGTGLGLALSYGIIRRFGGLLEVESELGKGSVFTIKLP 674 >gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 444 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 60/233 (25%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + + H++ +P+ +I +E L + + +I Sbjct: 211 LFRDITERRQLEQMRTEFVANASHELRTPLTSIRGFIEALRDGAINEPETARRFLGIIEE 270 Query: 56 SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTG 106 + + + R V+ + ++V Sbjct: 271 ETDRLTELVDDLLKLATIEERRNMFGRLPVELPGVVQRAVDTFASRARQKGVALRVELAD 330 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPE-- 162 + ++ + + ++ K I+++ + + + G Sbjct: 331 GLPPVIGDQKLLTQMFINLLDNAVKFTEKGEITIRAAAAEGGVEVEVLDTGAGIAPEHLP 390 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ T + V + + R+ S L Sbjct: 391 RIFERFFRGDKARTQGGTGLGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLP 443 >gi|111074994|gb|ABH04850.1| sensory histidine kinase [Heliobacillus mobilis] Length = 598 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 10/220 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + L M+L+ L + + H+I +P+ + L+LL+ + + Sbjct: 378 ETELLRLERMNLIGQLAAGLGHEIRNPLQTVRGFLQLLENKYQTEREYFDLMIAELDRAN 437 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + K D + L + Q D ++++ + +E Sbjct: 438 YIITEFLSLSKSKSDNLKSLLIDDIVTHLFPLIQSKAFLEEKDVKLELDNSTSIFGDEKE 497 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 +++LNL ++ G +TI + ++ G PE +++ V S Sbjct: 498 LKQLILNLVRNGIEAMKLGKILTIKTFTKGEHVVLAVVDQGAGI-APEILSKLGTPFVTS 556 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + +A + ++ + Sbjct: 557 RADGTGLGLAVCYSIAERHNAKIEVDTSP-EGTTFFVKFP 595 >gi|300789402|ref|YP_003769693.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] gi|299798916|gb|ADJ49291.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] Length = 602 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 20/229 (8%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58 + + S I H++ +P+ I LE ++ + + ++ L Sbjct: 354 RRERIEEQRKA--MVSDIAHELRNPLNVIRGRLEAAEDGHLPFDRALSASLLEETVLLQH 411 Query: 59 SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +RL + + + V V+ Sbjct: 412 IVDDLQDLAAADAGQLRLHPEPLDAAELAGHVAAAHADRAAAGGVTLTVEALGEATLPAD 471 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 +++ NL A P GG+VTI V + +E ++ G+ + F + Sbjct: 472 PVRLRQVVGNLVTNAIRHTPPGGRVTIRVSSTVDEVTLAVADTGSGIAAEDLPHVFDRFW 531 Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V L + + E D + L K Sbjct: 532 RAEKSRSRQTGGSGLGLAIVRHLVAAHGGTVTVESEVDTGSTFTVRLPK 580 >gi|228926464|ref|ZP_04089536.1| hypothetical protein bthur0010_11830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833288|gb|EEM78853.1| hypothetical protein bthur0010_11830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 486 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482 >gi|302341450|ref|YP_003805979.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638063|gb|ADK83385.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 650 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSSMD--LVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 ++ L S LV L + + H+I +P+ + LL D +Q I Sbjct: 406 EESEKRLLQSEKQALVGRLAAGVAHEINNPLTGVLTFTHLLLRRGDLPAEVVHDLQTIAA 465 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 + +K + T L + + + R+ E Sbjct: 466 QTERVRKIVKGLLDFSRQTKLEAQPSDLNPLVAAAVKLMTNQALLKGVRLHFDPQEEFPV 525 Query: 111 LSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNE-------NIFSLKINGNLARF 160 ++ +R++ +L+N+ + A + P GG+V + + ++ G Sbjct: 526 MNLDRSQMQGVLINMIINALDATPPGGEVAVITRPGDPARRGGRQGVEILVRDTGCGI-A 584 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ D + + + + + + L Sbjct: 585 PEHLDKLFDPFFTTKEVGQGTGLGLAVSQGVVARHGGEITVRSKPGQGSTFTIWLP 640 >gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047] gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047] Length = 621 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 68/240 (28%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + D S + H++ +P+ ++ +E L + I + +++ + + Sbjct: 369 DVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPKIAPKFLEVTQQETS 428 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106 I + + V + + I + V Sbjct: 429 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKSHKKKYTINR 488 Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + +++ N+ A P GG +T+ + ++N I S+ G Sbjct: 489 ELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIP 548 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + R+ + + L Sbjct: 549 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGRGSTFYISLP 608 >gi|196040665|ref|ZP_03107964.1| sensor histidine kinase KinD [Bacillus cereus NVH0597-99] gi|196028455|gb|EDX67063.1| sensor histidine kinase KinD [Bacillus cereus NVH0597-99] Length = 498 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494 >gi|148550730|ref|YP_001260169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] gi|148503149|gb|ABQ71402.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] Length = 500 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM 50 A+ L S L AL + S + H++ P+ AI N L+ LL+ ++ + Sbjct: 250 AEARLQELQSELVHVSRLTALGEMASALAHELNQPLSAIANYLKGSKMLLEREEDRNDRV 309 Query: 51 --------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + F+ + + + Sbjct: 310 IDAVGRAAAEALRAGKIIRRLRDFVARGETERAVESLPKLVEEASALALVGAKEHGIRVQ 369 Query: 103 SWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKI 153 +ID + +++LNL A ++ G + ++ Sbjct: 370 HDFSPEIDLVLADKVQIQQVVLNLVRNAIDAMAGNGSGPRALTIAIAPADTDMARVTVAD 429 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G + ++ + + + + + R+ E + V L Sbjct: 430 TGPGI-AADVADRLFQPFITTKRTGMGVGLSISRTIVEAHGGRIWAESHEGGGAVFGFTL 488 Query: 214 EK 215 K Sbjct: 489 PK 490 >gi|52144002|ref|YP_082826.1| sensor histidine kinase; sporulation kinase [Bacillus cereus E33L] gi|118476905|ref|YP_894056.1| sensor histidine kinase, sporulation kinase [Bacillus thuringiensis str. Al Hakam] gi|196046543|ref|ZP_03113768.1| sensor histidine kinase KinD [Bacillus cereus 03BB108] gi|218902541|ref|YP_002450375.1| sensor histidine kinase KinD [Bacillus cereus AH820] gi|225863297|ref|YP_002748675.1| sensor histidine kinase KinD [Bacillus cereus 03BB102] gi|51977471|gb|AAU19021.1| sensor histidine kinase; possible sporulation kinase [Bacillus cereus E33L] gi|118416130|gb|ABK84549.1| sensor histidine kinase, possible sporulation kinase [Bacillus thuringiensis str. Al Hakam] gi|196022727|gb|EDX61409.1| sensor histidine kinase KinD [Bacillus cereus 03BB108] gi|218538858|gb|ACK91256.1| sensor histidine kinase KinD [Bacillus cereus AH820] gi|225786110|gb|ACO26327.1| sensor histidine kinase KinD [Bacillus cereus 03BB102] Length = 498 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494 >gi|228990217|ref|ZP_04150186.1| hypothetical protein bpmyx0001_9820 [Bacillus pseudomycoides DSM 12442] gi|228769500|gb|EEM18094.1| hypothetical protein bpmyx0001_9820 [Bacillus pseudomycoides DSM 12442] Length = 542 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 19/221 (8%), Positives = 62/221 (28%), Gaps = 11/221 (4%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61 + ++ V L + I H++ +P+ I ++LL + ++ + Sbjct: 313 ELLKKSDTLKAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEVGEDKEYFRLIFSEIRGIET 372 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------DLSRE 114 I +F+ +A + ++ V+ + T + Sbjct: 373 ILQEFLSIAKPNVVVFEPKNLCTILDNVVALISTQAIMKNIRITLNMDFENLLVECCEIQ 432 Query: 115 RAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++ N+ + ++ + E + + G PE+ ++ + Sbjct: 433 LKQVFFNILQNSIEAIQNGQEITINVKTHNSTEVMICISDKGVGI-PPERIKRLGEPFYS 491 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 492 TKEKGTGVGLMISYQVIESHGGKINIRSQVGKGTTVIVFLP 532 >gi|229160386|ref|ZP_04288384.1| hypothetical protein bcere0009_11800 [Bacillus cereus R309803] gi|228623110|gb|EEK79938.1| hypothetical protein bcere0009_11800 [Bacillus cereus R309803] Length = 486 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 60/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVYIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI+V ++K + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTITVTNNKTHAQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSIENEGTTVHIEIP 482 >gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] Length = 617 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 37/243 (15%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 KN S + H++ +P+ ++ +E L + I + +++ + Sbjct: 369 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 421 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102 + I + + V + + + V Sbjct: 422 TERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYS 481 Query: 103 ------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + + +++ N+ A P GG +T+ + S+N+ I S+ G Sbjct: 482 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQIILSISDQGL 541 Query: 157 LARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F + + + + +K ++ + + Sbjct: 542 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 601 Query: 212 LLE 214 L Sbjct: 602 SLP 604 >gi|229114872|ref|ZP_04244285.1| hypothetical protein bcere0017_11690 [Bacillus cereus Rock1-3] gi|228668564|gb|EEL23993.1| hypothetical protein bcere0017_11690 [Bacillus cereus Rock1-3] Length = 478 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 58/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 253 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 312 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 313 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 372 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V D++ + G + Sbjct: 373 KDHMKQVVLNITKNAIEAMTSSDTLTIVVTDNETHAQLQIIDTGKGI-PKHIQKHLFHPF 431 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 432 FTNKDTGTGLGLVICKRIVEMYDGHIFIDSKENKGTTVHIEIP 474 >gi|229172073|ref|ZP_04299638.1| hypothetical protein bcere0006_11870 [Bacillus cereus MM3] gi|228611416|gb|EEK68673.1| hypothetical protein bcere0006_11870 [Bacillus cereus MM3] Length = 487 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + + ++LV + H+I +P+ I + LL E + +I Sbjct: 262 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 321 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V + Sbjct: 322 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHSVHIRCS 381 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G + ISV +++ + G + Sbjct: 382 KDHMKQVVLNITKNAIEAMNSGDTLIISVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 440 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + I++ + + Sbjct: 441 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSIENEGTTVHIEIP 483 >gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] Length = 620 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 37/243 (15%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 KN S + H++ +P+ ++ +E L + I + +++ + Sbjct: 372 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 424 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102 + I + + V + + + V Sbjct: 425 TERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYS 484 Query: 103 ------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + + +++ N+ A P GG +T+ + S+N+ I S+ G Sbjct: 485 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQIILSISDQGL 544 Query: 157 LARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F + + + + +K ++ + + Sbjct: 545 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 604 Query: 212 LLE 214 L Sbjct: 605 SLP 607 >gi|157692126|ref|YP_001486588.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157680884|gb|ABV62028.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 453 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSS 57 N + + L + + I H++ +P+ +++ L+L+ D + Sbjct: 217 RSNQQLQMQAQKLAVAGQIAAGIAHEVRNPLTSVNGFLQLMKTQYPERTDYFDIIFSEIK 276 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112 + + + LA + + +EQVI + Sbjct: 277 RIDFVLSELLVLAKPQSVHFQEVQLHELLEQVITLLKTNAVLSNIDLKQPFKRQDAGAIL 336 Query: 113 ---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL A ++P GG + IS + NE +++ G + +I D Sbjct: 337 ADANQMKQLFINLIKNAIEAMPEGGSIYISTEKVLNEWKITIQDEGKGMSEEDI-QKIYD 395 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R+ L Sbjct: 396 PFFSTKKEGTGLGLTICATILKDHHGRMDVSSELGKGTAFHIYLP 440 >gi|147676786|ref|YP_001211001.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146272883|dbj|BAF58632.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 471 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S H++ +P+ I ++ELL + +E + I + + + Sbjct: 252 FVSDASHELRTPLTTIKGNVELLKKMGDADPETRNEALNDIAGEVERMSRLVSDLLVLAR 311 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----------SRERAKILLN 121 S+ + ++ + + T D ++LL Sbjct: 312 ADASLKLKKEAVALAPLLAEAARRGSVLAGGLTFSAGDFSALGEAEVLGDKDYLMQLLLI 371 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178 L A P GG+V + Q + S+ NG + F + + Sbjct: 372 LIENAVRYTPPGGEVRLEAQAEGDCVEISIIDNGIGIAEKDLPHIFERFYRADKVRFSSG 431 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ ++ + + + L Sbjct: 432 SGLGLAIARWIVEEHGGTIIVKSKEGEGSTFTVHLP 467 >gi|323490770|ref|ZP_08095972.1| two component system histidine kinase [Planococcus donghaensis MPA1U2] gi|323395652|gb|EGA88496.1| two component system histidine kinase [Planococcus donghaensis MPA1U2] Length = 462 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 64/216 (29%), Gaps = 20/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I ++L+ + + L + +D Sbjct: 242 SSISHELRTPLTYIKGYADILERGDTTEREREEYLSIIREETAHLTSLIGNLFDLAKLDR 301 Query: 80 LIGLGDIEQVI---------------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + ++V + + VQ S + S ++LLN+ Sbjct: 302 NQFAIEQKKVSIAELLNSVALLVKPAFEEKQITLSVQCSEDLQAYVDSERIQQVLLNILD 361 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179 A G V I+ + +N+ ++ G E F ++ + Sbjct: 362 NARKHSFSGSDVRITCTEEENKIAIRIRDEGQGIPEDELPFVFDRLYRVEKSRSRERGGS 421 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ + ++ L++ Sbjct: 422 GLGLAIAKEIVESHGGQINIDSQVGEGTTVTVRLKR 457 >gi|299136245|ref|ZP_07029429.1| integral membrane sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298602369|gb|EFI58523.1| integral membrane sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 473 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 18/228 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSL--------------ELLDEVGIEDEVM 50 + S L +++ I H++ +P+ +I S+ ELL E+ +++ + Sbjct: 244 VEAAQESERLRSMILDSITHELRTPVASIKTSIDKLLEANAESAESHELLTEISEQNDRL 303 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++ + +I + + Sbjct: 304 DQLVTEAVEMAQLDTQQVSMDVSPQQLSDMIDAAIETAGARLADHEIIKRIPEDLPCVVA 363 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 K++ NL A G + ISV+ S+ G E+ Sbjct: 364 DPLRIEKVIYNLLENAAKYSAPGQPIYISVEVRGQCASCSIADRGIGIDPAEQPLVFDKL 423 Query: 171 NVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + V + L Sbjct: 424 YRSRKRTAHIPGTGMGLAICRAIVEAHNGTISVTSQPGQGSVFTFTLP 471 >gi|194292456|ref|YP_002008363.1| histidine kinase of the two-component signal transduction system [Cupriavidus taiwanensis LMG 19424] gi|193226360|emb|CAQ72309.1| Histidine kinase of the two-component signal transduction system [Cupriavidus taiwanensis LMG 19424] Length = 684 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 + ++S L L + + H+I +PI I +L++ + ++LI Sbjct: 439 LRATRQQLITSEKLALAGQLTAGVAHEINNPIAVIQGNLDVARDILGPAADPVRHELRLI 498 Query: 54 RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSW 104 + + T +D G ++ + + + + Sbjct: 499 DEQVRRIYLLTNRLLQFVRPEAYAGNTERLDVGEVAGGCVDLVRHMLKDAAIRVELAFTA 558 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK 163 T E ++++NL A ++P GG +T++ QD ++ G R + Sbjct: 559 TRRVRISRSELQQVIVNLLTNAIHAMPDGGTLTLATQDWDAHGVTLHVRDTGRGIRAEDL 618 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + L R+ E L Sbjct: 619 PNLFNPFFTTKKQMGTGLGLSISYALVERYGGRITVESTVGQGAEFIVWL 668 >gi|324326617|gb|ADY21877.1| hypothetical protein YBT020_13225 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 595 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDELSTEKKNLYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572 >gi|229196820|ref|ZP_04323561.1| hypothetical protein bcere0001_23750 [Bacillus cereus m1293] gi|228586543|gb|EEK44620.1| hypothetical protein bcere0001_23750 [Bacillus cereus m1293] Length = 579 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 392 RIEAILQEFLSIAKTDELSTEKKNLYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 451 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 556 >gi|89893568|ref|YP_517055.1| hypothetical protein DSY0822 [Desulfitobacterium hafniense Y51] gi|89333016|dbj|BAE82611.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 457 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQ 51 M+ + + +++ L L S + H++ +P+ I E + + E ++ Sbjct: 215 MSAELKEKIDAIERYDRLRQELLSDVSHELRTPLTVIQGYTEAMQDGLVKSKEQEQHYLK 274 Query: 52 LIRLSSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 L+ ++ ++ + I + ++ E + Sbjct: 275 LVIDEIERLRRLVEDLQDLKGLEAMDSINDMDYVVMNKLVQISVERLKYFAESKEIQLEV 334 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + S ++L NL A G V I + K+ ++K +G+ Sbjct: 335 IIPEKQITIWGNSDRLKQVLTNLADNAIKHSDSKGNVRIELGTEKSWAYIAVKDSGSGIP 394 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + V + + ++ E + + Sbjct: 395 KEELQNIWERFYKVDKSRSRRGTGTGLGLSIVKRITEMHSGKVAVESKLGNGARFTVYFP 454 >gi|116623716|ref|YP_825872.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226878|gb|ABJ85587.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 822 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 70/229 (30%), Gaps = 17/229 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + M+ + L + HD + + I+ +L + E + ++ I + Sbjct: 319 EEQLVQAQKMESIGRLAGGVAHDFNNLLTVINGYSRMLLDAPPSEPPERDSLEEIHRAGE 378 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDL 111 A + + ++ + + I+ + + Sbjct: 379 RAAGLTQQLLAFSRKQILQPRVLDCSRVVREIQSMLVRLVGEDIDLKVTLCDAPATVCAD 438 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEKFTQIV 168 + ++++NL + A ++PRGG + I + + ++ +G E+ +I Sbjct: 439 RHQLEQVIMNLAVNARDAMPRGGTMHIETSMMEGSVSHVTLAVSDSGAGM-GEEQQRRIF 497 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + ++ + E L K Sbjct: 498 EPFFTTKEIGKGTGLGLSIIQGIVQQSGGSIEVESEPGCGSTFRIFLPK 546 >gi|228985742|ref|ZP_04145892.1| hypothetical protein bthur0001_24320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773914|gb|EEM22330.1| hypothetical protein bthur0001_24320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 579 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 392 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTDSKDIIIEC 451 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGIGTTVTIYLPK 556 >gi|229156231|ref|ZP_04284327.1| hypothetical protein bcere0010_24200 [Bacillus cereus ATCC 4342] gi|228627106|gb|EEK83837.1| hypothetical protein bcere0010_24200 [Bacillus cereus ATCC 4342] Length = 590 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTDSKDIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGIGTTVTIYLPK 567 >gi|228914005|ref|ZP_04077627.1| hypothetical protein bthur0012_12420 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229090387|ref|ZP_04221630.1| hypothetical protein bcere0021_12160 [Bacillus cereus Rock3-42] gi|229183627|ref|ZP_04310850.1| hypothetical protein bcere0004_11990 [Bacillus cereus BGSC 6E1] gi|228599870|gb|EEK57467.1| hypothetical protein bcere0004_11990 [Bacillus cereus BGSC 6E1] gi|228692970|gb|EEL46688.1| hypothetical protein bcere0021_12160 [Bacillus cereus Rock3-42] gi|228845610|gb|EEM90639.1| hypothetical protein bthur0012_12420 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 486 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482 >gi|258591619|emb|CBE67920.1| putative Nitrogen assimilation transcription regulation protein (ntrB) (synonyms:glnR, glnL) [NC10 bacterium 'Dutch sediment'] Length = 405 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 24/235 (10%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RL 55 + + L S L AL + + + H+I +P+ + + +LL+ ++ Sbjct: 149 RELEERLQRSDRLAALGTVAAGVAHEIRNPLAGLRGAAQLLEGEPDFPPALREYTSVIVK 208 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS--- 112 ++ + G V L +I + + D Sbjct: 209 EVDRLGAIVERLLSFATPRGPVLRSCNLHEILDGLFFLERAPLGAAKVTIQRQYDPQLPE 268 Query: 113 -----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF--------SLKINGNLAR 159 E ++ LNL ++P GG +T+ + ++ + G+ Sbjct: 269 ILADPSEIQQLFLNLIHNGVEAMPDGGDLTVRTRYERSVKRCGGRSVAVVEIIDRGSG-F 327 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + + + ++ + L Sbjct: 328 DPEVERRLFTPFFTTKERGTGLGLAICLRIVEDHGGAMEATSSPGRGSRFCVWLP 382 >gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 887 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 63/244 (25%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELL------DEVGIED 47 K + L L A + + H++ +P+ AI EL+ + + Sbjct: 316 RKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSELMLGEATGEFDELNR 375 Query: 48 EVMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + I S + + M L + D I + + Sbjct: 376 KFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFADTKSISSPLALKKNI 435 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V +I+ NL A P GG V + + S+N ++ G Sbjct: 436 SMDFNVESDFLIYADRTRFKQIMYNLVSNAIKFTPAGGSVEVVGRRSENRIRVTVSDTGI 495 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E + +S + + R+ E + Sbjct: 496 GISQDEIK-HLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGGRIWVESEPGKGSTFT 554 Query: 211 ALLE 214 + Sbjct: 555 FEVP 558 >gi|283853532|ref|ZP_06370772.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio sp. FW1012B] gi|283571071|gb|EFC19091.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio sp. FW1012B] Length = 590 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSM 58 + L AL L + + H+I +P+ +I + + E +L + + Sbjct: 355 RRLQEEVRRKEKLAALGSLAAGVAHEIRNPLSSIKGFAKYFEGQCAEGSQGRELAAVMAQ 414 Query: 59 SAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGE----- 107 + + + D L + + A K++ V++ Sbjct: 415 EVDRLNRVITELLDFARPSDLKTRSTDVGSLIEHSLRLVRQDAEGKKITVTFDRNAGLPV 474 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166 + LLNL++ A ++ GG + + ++ +G PE + Sbjct: 475 IAIDPDRLTQALLNLYLNAIQAMENGGTLAVRAAADGRGGVRIEVEDSGKGI-APESLSS 533 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + ++ + + D + LL Sbjct: 534 IFNPYFTTKSSGTGLGLAIVQKIIEAHRGEVKVKSTPDRGTTFNILLP 581 >gi|221322739|ref|ZP_03604033.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] Length = 738 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49 K + L D +V L + I H+I +P+ A+ ++LL D Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSE 560 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEK 108 ++ I +I K + + + D+ + V ++ + Sbjct: 561 LKRIESIITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPI 620 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A +P GG + ++++ + SLK G +K ++ Sbjct: 621 YCEPNQLKQVFINILKNAIEVMPDGGNIFVTIKALDQDHVLISLKDEGIGM-TEDKLKRL 679 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ ++ E + V L Sbjct: 680 GEPFYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLP 726 >gi|16078417|ref|NP_389236.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221309216|ref|ZP_03591063.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221313544|ref|ZP_03595349.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318466|ref|ZP_03599760.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|321315107|ref|YP_004207394.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|81341919|sp|O31661|KINE_BACSU RecName: Full=Sporulation kinase E; AltName: Full=Sensor histidine kinase E gi|2633724|emb|CAB13226.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|291483886|dbj|BAI84961.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] gi|320021381|gb|ADV96367.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 738 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49 K + L D +V L + I H+I +P+ A+ ++LL D Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSE 560 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEK 108 ++ I +I K + + + D+ + V ++ + Sbjct: 561 LKRIESIITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPI 620 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A +P GG + ++++ + SLK G +K ++ Sbjct: 621 YCEPNQLKQVFINILKNAIEVMPDGGNIFVTIKALDQDHVLISLKDEGIGM-TEDKLKRL 679 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ ++ E + V L Sbjct: 680 GEPFYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLP 726 >gi|328911399|gb|AEB62995.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 739 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 AK + L D +V L + I H+I +P+ A+ ++LL E + Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEHSLYFNVITSE 561 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111 I +F+ LA + ++ + V+ ++ ++ TG + Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621 Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E ++ + ++ K+ + SL+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHILISLQDEGTGM-SEDKLKRL 680 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ R+ E + V L Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727 >gi|229000253|ref|ZP_04159822.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17] gi|229007776|ref|ZP_04165364.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4] gi|228753484|gb|EEM02934.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4] gi|228759585|gb|EEM08562.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17] Length = 611 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 384 FVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 443 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K V + + + + ++L N Sbjct: 444 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFSKKSRFIDMDADKITQVLYN 503 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D ++ S+ G E +I + Sbjct: 504 IISNALKYSPEGGTVTYRLRDREDMLEISVSDQGMGI-PKENVEKIFERFYRVDKARSRQ 562 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 563 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 601 >gi|312889647|ref|ZP_07749196.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297869|gb|EFQ74989.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 656 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 59/209 (28%), Gaps = 18/209 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 H++ +P+ ++ L++L+ + ++ ++ + + ++ G Sbjct: 445 SHELKTPLTSMSGFLQILERTVPDGIAKSFAEKALKQLAKLNELVNDLFDISKIQAGKLQ 504 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKILLNLFMVAHASL 130 L D+ I D ++L NL A Sbjct: 505 LNFEPFDLSDLLDEITDTFEQTHPHYNLKMAADGELLVSGDKMRLEQVLTNLLGNAVKYA 564 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYY 185 P +V++ + NE S+K G PE I + Y Sbjct: 565 PDAREVSMIAIRTGNEVRISVKDQGPGI-LPENQQHIFSQFYRVKEQERKTSGLGLGLYI 623 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ E H + L Sbjct: 624 SKDIIDRHGGRIWVESTPGHGATFTFSLP 652 >gi|258516116|ref|YP_003192338.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779821|gb|ACV63715.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 557 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 72/241 (29%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51 K + S L A+ + + + H++ +P+ + + +LL ++ + + Sbjct: 311 EKMKAQLVQSAKLAAIGEMAAGVAHELNNPMTVMIGNAQLLLRELYEKDEDDSTSEILQD 370 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106 ++ I + + + S +E + + T Sbjct: 371 IVSCGLRCKKIIQNLLSFSRQDSYPYTSTNLNDVVEHALSLTKYQINNNNIDITFAAAKN 430 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------SKNENIFSLKING 155 + + ++++N + A +L V+ + S++ NG Sbjct: 431 IPPVFANTHQLEQVIINFLLNARDALDTDLGREKCVEILTSVREDELGHRWAMVSVRDNG 490 Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE T+I + S + + +A + + + + +L Sbjct: 491 PGI-LPENLTKIFNPFFTSKEASKGTGLGLSVSLGIAQAHNGTIEVDSETGRGSKFTLVL 549 Query: 214 E 214 Sbjct: 550 P 550 >gi|251795528|ref|YP_003010259.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247543154|gb|ACT00173.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 470 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 74/229 (32%), Gaps = 16/229 (6%) Query: 1 MAKNICFN--LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIR 54 M +N L + L A+ L + I H+I +P+ ++ + L+++ G+ + +++ Sbjct: 229 MQENQNKTKLLQAEKLTAVGQLAASIAHEIRNPLTSLKGFVHLIEQAVTGVNENYFTIMK 288 Query: 55 LSSMSAIIRLK---FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + ++ + + + ++ A+ V++ Sbjct: 289 DELRRIELITSELLYLAKPQAQAFKDEQICQIIQDVNLLMSSQALMNNVEIRVPNLIGLP 348 Query: 112 SRER-----AKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFT 165 ++ +NLF A ++P GG + I S + + G E Sbjct: 349 PVRCVAAQLKQVFINLFKNAMEAMPSGGVIDIQAFSPSPEMLMIQVSDTGKGI-PQELIA 407 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + H + L D + L Sbjct: 408 KIGSPFYTTKENGTGLGMMATQQIIHSHGGTLDITSTDGKGTTIHICLP 456 >gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 395 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 60/236 (25%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58 + L L + + + H++ +P+ AI E+L + I DE + + Sbjct: 150 QKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGFAEVLKDGLVGPINDEQREYVDDIYS 209 Query: 59 SAIIRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S L + L + + K S Sbjct: 210 SGKHLLNMINNVLDISKIEAGKLELKYEEICVKETIDDVLNTVSGIANKKNITIKNTIQS 269 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +IL NL A P+ G V I F++ G + + Sbjct: 270 DIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVCIDTTLKDLYVQFAIADTGIGIKQEDI 329 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + + E + +L Sbjct: 330 EKIFEAFSQVDSSLARNYEGAGLSLALTKRLVELHGGEIWVESFYGKGSTFTFILP 385 >gi|240138480|ref|YP_002962952.1| PAS/PAC sensor signal transduction histidine kinase (fragment) [Methylobacterium extorquens AM1] gi|240008449|gb|ACS39675.1| PAS/PAC sensor signal transduction histidine kinase (fragment) [Methylobacterium extorquens AM1] Length = 511 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%) Query: 2 AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED 47 + L + L A+ + S + H++ P+ AI N L LL+ E Sbjct: 259 RQETEARLQELQSELVHVSRLTAMGEMASTLAHELNQPLTAITNYLKGCRRLLERSEDEH 318 Query: 48 ---------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFI 94 + +F+ + + + + Sbjct: 319 APTIREAVNHAADQAIRAGQIIRRLREFVSRGESEPHVHHLPKLIEEASALALIGTIENG 378 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSL 151 + + +++LNL A ++ + +V + S+ Sbjct: 379 VRATFRLDPDADVALADRIQIQQVVLNLIRNAIEAMQDSSQRELVVATVARTDGMVEVSV 438 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G PE +Q+ V + + + + R+ E V Sbjct: 439 SDTGTGI-APEVASQLFQPFVTTKRHGMGVGLSICRTIVEAHGGRIWVESEPGKGTVFRF 497 Query: 212 LL 213 L Sbjct: 498 TL 499 >gi|228932715|ref|ZP_04095588.1| hypothetical protein bthur0009_11910 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826973|gb|EEM72734.1| hypothetical protein bthur0009_11910 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 479 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 254 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 313 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 314 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 373 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 374 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 432 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 433 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 475 >gi|254685207|ref|ZP_05149067.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254722614|ref|ZP_05184402.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254737658|ref|ZP_05195361.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254743162|ref|ZP_05200847.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254751973|ref|ZP_05204010.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|291612197|ref|YP_019277.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|224552860|gb|AAT31752.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] Length = 499 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 252 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 311 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 312 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 371 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 372 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 430 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 431 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 476 >gi|49185464|ref|YP_028716.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|270000560|ref|NP_844998.2| sensor histidine kinase [Bacillus anthracis str. Ames] gi|49179391|gb|AAT54767.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|269850257|gb|AAP26484.2| sensor histidine kinase [Bacillus anthracis str. Ames] Length = 509 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 262 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 321 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 322 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 381 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 382 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 440 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 441 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 486 >gi|65319942|ref|ZP_00392901.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] Length = 316 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 69 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 128 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 129 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 188 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 189 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 247 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 248 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 293 >gi|229133469|ref|ZP_04262296.1| hypothetical protein bcere0014_23880 [Bacillus cereus BDRD-ST196] gi|228649869|gb|EEL05877.1| hypothetical protein bcere0014_23880 [Bacillus cereus BDRD-ST196] Length = 590 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110 +F+ +A + + + V+ + Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 462 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + K I S+ G E+ ++ + Sbjct: 463 SENQLKQVFINILQNSIEAMLDGGKISIHIKEIHKKGVIISVIDEGIGI-PEERIKRLGE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIEGHQGTISIMSEVGVGTTVTIYLPK 567 >gi|229167477|ref|ZP_04295215.1| hypothetical protein bcere0007_24400 [Bacillus cereus AH621] gi|228616039|gb|EEK73126.1| hypothetical protein bcere0007_24400 [Bacillus cereus AH621] Length = 614 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 367 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 426 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110 +F+ +A + + + V+ + Sbjct: 427 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 486 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + K I S+ G E+ ++ + Sbjct: 487 SENQLKQVFINILQNSIEAMLDGGKISIHIKEIHKKGVIISVIDEGIGI-PEERIKRLGE 545 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 546 PFYSTKEKGTGIGLMLSYKIIEGHQGTISIMSEVGVGTTVTIYLPK 591 >gi|115377667|ref|ZP_01464861.1| cell cycle histidine kinase CckA [Stigmatella aurantiaca DW4/3-1] gi|310824444|ref|YP_003956802.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365329|gb|EAU64370.1| cell cycle histidine kinase CckA [Stigmatella aurantiaca DW4/3-1] gi|309397516|gb|ADO74975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 502 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +A+ + + + A+ L + H+I +P+ I + +D E++ M+L S + Sbjct: 264 LAEAQEQLVQTGKMAAVGQLAGGVAHEINNPLAVILGFAQGMDRRVPENDPMRLPVRSIV 323 Query: 59 SA--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKI 109 L F R+ SVD + ++E + ++ + Sbjct: 324 REALRCKNLVQELLTFSRVGKKNIESVDLNALVRSTLVLVEARARTQEVKILQDFAATLP 383 Query: 110 DLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFT 165 L + ++ L + +L + + G+ E + Sbjct: 384 ILQGNKTQLQQVLVNLGTNALDVMKGGGTLTVRTYLQGTESVCLEVTDTGSGI-PEEVRS 442 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + V + +++ ++ E + L Sbjct: 443 RIFDPFFTTKPVGEGTGLGLSLVYEIVQQHRGQIEVESQIGVGTTMRVKLP 493 >gi|89894811|ref|YP_518298.1| hypothetical protein DSY2065 [Desulfitobacterium hafniense Y51] gi|89334259|dbj|BAE83854.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 533 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 12/221 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQLI 53 L ++LV + + I H+I +P+ + L+L+ E + + Sbjct: 306 TEMVRLDRLNLVGQMAAGIAHEIRNPMTTVRGYLQLIGEKTQDMGQKSTLHFMIEELDRA 365 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + K + + L L + + R + + Sbjct: 366 NTIIKEFLTLAKSHKPNYQVFNLNTLLQNLHPLIEADSFTQNKHIRFTPGDIPDIGISPK 425 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + +++LN+ ++ GG +TI + + ++K G+ E ++ Sbjct: 426 DITQMVLNICRNGLEAMSEGGCLTIQTYKKNHTVVLAIKDEGHGI-PKELLEKLGTPFFT 484 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + R+ Sbjct: 485 TKESGTGLGLSICYKIAKSHNARIDVLSSP-EGTQFLISFP 524 >gi|163940454|ref|YP_001645338.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163862651|gb|ABY43710.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 595 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 348 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110 +F+ +A + + + V+ + Sbjct: 408 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 467 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + K I S+ G E+ ++ + Sbjct: 468 SENQLKQVFINILQNSIEAMLDGGKISIHIKEIHKKGVIISVIDEGIGI-PEERIKRLGE 526 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIEGHQGTISIMSEVGVGTTVTIYLPK 572 >gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] Length = 470 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +PI +I E L + +E+ + +I S ++ + Sbjct: 249 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLHIILKESERMQGLIEDLLDLSKIE 308 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G + L + + + + +V V I +I +NL Sbjct: 309 QQGFKLNMGTVDMKELLGEIKMVLENKSQEKEISLQVDVLRHVSVIGDPSRLKQIFINLV 368 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++++ + ++ + G E +I + Sbjct: 369 NNAIVYTPAGGTVSVALLEDEHNAYIKVSDTGIGISTEEIP-RIFERFYRVDKARSRNTG 427 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + L K Sbjct: 428 GTGLGLSIVKHLVEAHHGTITVDSTVGEGTTFTVALPK 465 >gi|229095921|ref|ZP_04226898.1| hypothetical protein bcere0020_11710 [Bacillus cereus Rock3-29] gi|228687492|gb|EEL41393.1| hypothetical protein bcere0020_11710 [Bacillus cereus Rock3-29] Length = 478 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 62/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 253 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 312 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR- 113 + + T ++ + I + + + + + + Sbjct: 313 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHHVHIRCS 372 Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V D++ + G + Sbjct: 373 KDHMKQVVLNITKNAIEAMTSSDTLTIVVTDNETHAQLQIIDTGKGI-PKHIQKHLFHPF 431 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 432 FTNKDTGTGLGLVICKRIVEMYDGHIFIDSKENKGTTVHIEIP 474 >gi|169830174|ref|YP_001700332.1| two-component sensor histidine kinase [Lysinibacillus sphaericus C3-41] gi|168994662|gb|ACA42202.1| two-component sensor histidine kinase [Lysinibacillus sphaericus C3-41] Length = 566 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 64/235 (27%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + + + S + H++ +P+ + + LE L + I + + + Sbjct: 324 TEQEKIEMDRRE----FVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPTFLNVTQTE 379 Query: 57 SMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWT 105 + I + + + + + + I + + + Sbjct: 380 TERMIRLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDKVQFARLFPETS 439 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++ N+ A P GG + + + +G E Sbjct: 440 FYVEIDTDKVTQVIDNIISNAIKYSPDGGNIRFGFTGQGDMLKVMISDDGMGI-PKENVG 498 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D ++ + + + ++ E + + L Sbjct: 499 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 553 >gi|329935905|ref|ZP_08285707.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] gi|329304596|gb|EGG48472.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] Length = 541 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 21/231 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+++ S+ + L I H++ +P+ + LE L + E++ + +M Sbjct: 310 MAESLQ---SAEERQRRLTGDIAHELRTPLANLRGYLEALRDGVVDPSPELLDSLHEEAM 366 Query: 59 SAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + ++ G D L + V R +V Sbjct: 367 LQQRIVDDLQDLALAEAGALTYHRAEVGLGDLLETARTAHAAQAEAAGVALRTRVPHPVR 426 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164 + +++ NL A + P GG V +S + + + G P F Sbjct: 427 VHADADRLRQVVGNLLGNALRATPPGGTVILSAERHGARAVLRVADTGTGIPAEQLPHLF 486 Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + ++ + E + L Sbjct: 487 DRFWRADAARGRQTGGSGLGLSIARQIVADHGGTVEVESTVGAGTTFTVTL 537 >gi|294636745|ref|ZP_06715085.1| signal transduction histidine-protein kinase AtoS [Edwardsiella tarda ATCC 23685] gi|291090046|gb|EFE22607.1| signal transduction histidine-protein kinase AtoS [Edwardsiella tarda ATCC 23685] Length = 593 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 69/228 (30%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K L + L L L + + H++ +P+ AI ++++ + + Sbjct: 358 RKEAQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIICQQTTLPAHQEYLSVVLK 417 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKID 110 I + L F R V + + +++ + Sbjct: 418 EIDSINKVIQQLLDFSRPRQSQWQRVSLNALIEEALILVQTSGVQARITFHCELDRTLPA 477 Query: 111 LSRER---AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +R ++LLN+ + A ++ RG + Q + + +++ +G + Sbjct: 478 IVADRELIKQVLLNILINAVQAISARGEIRIRTQQRTPTQQTVTIEDSGCGIDIA-LQKK 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + + + + L Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHSGDIDVVSTPGSGSTFTLTLP 584 >gi|297568395|ref|YP_003689739.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924310|gb|ADH85120.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 785 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 70/230 (30%), Gaps = 20/230 (8%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS 57 L + L +L L + I HD + + AI +LEL L +++ +S Sbjct: 405 TEAELLKAKKLESLGVLAAGIAHDFNNILTAIMGNLELARYLLGPQHQASNLIEEGTKAS 464 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLS 112 A + + + + I + DF+ V + S Sbjct: 465 QRAQGLTQQLLTFARGGAPIRQAASIAGIIRDSADFVLRGSEVSCRYEIPHDLKLVNVDS 524 Query: 113 RERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++++ N+ + A ++ + + + +G+ E+ Sbjct: 525 GQISQVIQNIIINAREAISGSGTITVSCRNLGPVKKMPADEYVEIKISDSGSGI-SREEQ 583 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ ++ E + LL Sbjct: 584 GKIFDPYFTTKEKGSGLGLAVCHSIIAKHHGKISVESAPGQGCTFTILLP 633 >gi|116670333|ref|YP_831266.1| periplasmic sensor signal transduction histidine kinase [Arthrobacter sp. FB24] gi|116610442|gb|ABK03166.1| periplasmic sensor signal transduction histidine kinase [Arthrobacter sp. FB24] Length = 587 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62 ++ ++++ L + I H+ +P+ +I L+L+ + E + L Sbjct: 334 DVTDLVNALALKDDFVANISHEFRTPLMSILGYLDLVLDGEEETAGQHELFLGMAQNNAE 393 Query: 63 ---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + +D + + V+ ++ Sbjct: 394 KLLNLVSGLLTVSSDSMGVHPQRMDLGDLVRKCVVSAKPRADGRWVTIVNEVSRAFWITA 453 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++L NL A G VT+ ++ ++ FS+ G + Sbjct: 454 DPERLAQVLDNLLTNAIKYSQPGDVVTVRAWETNDQACFSVTDTGMGISEQDLPHIFTRY 513 Query: 171 NVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + + V + + D + L + Sbjct: 514 YRSSRVRESAMPGVGLGLGIVKRIVENHGGSATVTSKPDLGSTFTVSLPR 563 >gi|328553750|gb|AEB24242.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] Length = 739 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 AK + L D +V L + I H+I +P+ A+ ++LL E + Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEHSLYFNVITSE 561 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111 I +F+ LA + ++ + V+ ++ ++ TG + Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621 Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E ++ + ++ K+ + SL+ G +K ++ Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHILISLQDEGTGM-SEDKLKRL 680 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ R+ E + V L Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727 >gi|303248315|ref|ZP_07334577.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490340|gb|EFL50252.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 738 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 67/243 (27%), Gaps = 31/243 (12%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 KN+ L S + A+ L I HD + +G I E+++ D + Sbjct: 320 RKNLEQRLRQSQKMEAIGTLAGGIAHDFNNILGIIMGFTEMIEGDAPPDSPLARRVDHIL 379 Query: 53 --IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 R + + L F R + + + ++I + + + + Sbjct: 380 SACRRARDLVLQILSFSRQNEQGAKPLHVGPLVKETLKLIRATVPNSIELVDAVRPGRDT 439 Query: 111 ---LSRERAKILLNLFMVAHASLPRGG--------------KVTISVQDSKNENIFSLKI 153 + +I++NL A ++ G + + ++ Sbjct: 440 VLAEPTQIQQIIMNLCGNAAQAMRDTGGVLEVGLEECPGGLCPIANDAPPADCLRLWVRD 499 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G E +I D + + + + + + E S Sbjct: 500 TGPGI-PGEIQERIFDPFFTTKKPGEGTGMGLAVAHGIVRKYNGDIKVESAPGQGATFSV 558 Query: 212 LLE 214 L Sbjct: 559 YLP 561 >gi|300088078|ref|YP_003758600.1| multi-sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527811|gb|ADJ26279.1| multi-sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 719 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 74/229 (32%), Gaps = 18/229 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-- 60 K S + +V + + I H+I +P+ I ELL E E ++ + Sbjct: 339 KAKAEMSSRLAVVGEMAAGIAHEINNPLTGIIGFSELLMEQSELPENVRENVVIISRESQ 398 Query: 61 ------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 L F R + +VD + + ++ + + + + Sbjct: 399 RIKDIVRRMLTFARQSAPQKSAVDIHELIDNTLELRKYVLETANIKVIRRYDMGLPWLTV 458 Query: 114 ---ERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ LN+ + A ++ ++TIS Q + + S K +G E ++ Sbjct: 459 DSGQMQQVFLNILVNAEHAMKEYHGRGEITISTQRAGDRIKLSFKDDGPGI-TDEVRPKL 517 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ + +D L Sbjct: 518 FQPFFTTKEPGEGTGLGLSLSLGIVQEHGGEITINSVDGQGAEFVIDLP 566 >gi|148265594|ref|YP_001232300.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399094|gb|ABQ27727.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 402 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 N + + + + +L + + H+I +P+ ++ E L ++ + Sbjct: 164 NELQLVQAEKMSSIGMLAAGVAHEINNPLTSVAGYAEALLRRFRDETGLVEDNRLKDFKK 223 Query: 62 IRLKFMRLAFGYTGSVD---------------------SLIGLGDIEQVIEDFIAVDKRV 100 +R ++ G +D L + + + Sbjct: 224 YLEVIIRESYRCKGIIDSLLSFSRKSEGSVGFVDLNKILNEVLELVRHKARNEKIEIQES 283 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++ +NL M A ++ G + I+ D ++ +G Sbjct: 284 MQPDLPMIKGDEAGLRQVFMNLTMNALQAIDGPGMIKIATFDQNGVVTATICDSGCGIPS 343 Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI D + + + ++ + E + L Sbjct: 344 S-LMDQIWDPFFTTKDVGQGLGLGLAVTYNIIKKHGGEIHVESKHGEGSKFTVRLP 398 >gi|295696418|ref|YP_003589656.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412020|gb|ADG06512.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 590 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 ++I L+ + + + H++ +P+ + E L D+ E+ ++I + Sbjct: 348 RDITEQLNIERMRRDFVANVSHELRTPLSMLQGYSEALVDDFIDDPEQRRELAEIILEET 407 Query: 58 MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 + + + VD + I + +QV Sbjct: 408 LRMRRLVNDLLDLAQLESGRFVMKRQPVDVRPLIQKIWRKFSALAQERKLTFHLEMQVDD 467 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L NL A G VTI S++ +++ G + Sbjct: 468 PVIVDADVDRLEQVLTNLIDNAFRHTQPPGSVTIRFSVSQDTARIAVEDQGAGIPPEDIP 527 Query: 164 --FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + E + LL Sbjct: 528 YIWERFYKVDKARTRNRGGTGLGLAIARNIVLQHDGDITVESRLGKGTTFTVLLP 582 >gi|270308765|ref|YP_003330823.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154657|gb|ACZ62495.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 1092 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 71/223 (31%), Gaps = 20/223 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI--- 61 S L A+ + + I H+I +P+ + ELL E + +Q+I S A Sbjct: 726 SSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLERKDLPDDVKDNLQIINEGSQRAREII 785 Query: 62 -IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER---A 116 L F R + VD + ++ + +V + + + Sbjct: 786 KRMLTFARQSTPQMNRVDITSLIDHTLELRNYVLATANIKVIKDYDANLPWVIADPGQLQ 845 Query: 117 KILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++ LNL + A ++ + TI + + S+ +G E ++ Sbjct: 846 QVFLNLIVNAEHAMKKAHDKGILTIQTKSLGDSIRISVTDDGPGM-PDEVLKKLFQPFFT 904 Query: 174 STI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ + E L Sbjct: 905 TKEPGEGTGLGLSLSLGIIQEHNGTIRAESKAGKGTTFIVELP 947 >gi|167036596|ref|YP_001664174.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039248|ref|YP_001662233.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|256751654|ref|ZP_05492529.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|300913888|ref|ZP_07131205.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307725427|ref|YP_003905178.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|320115023|ref|YP_004185182.1| ATP-binding region ATPase domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853488|gb|ABY91897.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|166855430|gb|ABY93838.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749463|gb|EEU62492.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|300890573|gb|EFK85718.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307582488|gb|ADN55887.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|319928114|gb|ADV78799.1| ATP-binding region ATPase domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 470 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 75/232 (32%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MAK + ++ + + H++ SP+ +I ++ + + + +++++ Sbjct: 237 MAKELE---QLENMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPKEKACDYLKIVQKE 293 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107 + + + D + + + D V+V + + Sbjct: 294 TRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++ ++L NL A G + I + ++ ++K NG + Sbjct: 354 RRIVIGDKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDDKVFITIKDNGIGISPEDQE 413 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + D + Y V + + + + E + L Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESEVGKGTAFTFTL 465 >gi|157694430|ref|YP_001488892.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157683188|gb|ABV64332.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 612 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 71/220 (32%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ + + LE L + + + + + + I + + Sbjct: 381 FVANVSHELRTPLTTMRSYLEALAEGAIGDKELAPRFLSVTQNETERMIRLVNDLLQLSK 440 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + +T + + + D ++ ++ R + ++L N Sbjct: 441 FDSKDYQFNREWTNFIRFISLVIDRFEMTKEQHVEFIRNLPQREIYVEIDQDKITQVLDN 500 Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VES 174 + A P GG +T +V + + +FS+K G + F + + Sbjct: 501 IISNAMKYSPEGGHITFTVDLDEEKSLVLFSVKDEGIGIPKKDMDKIFERFYRVDKARTR 560 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + I+ ++ L Sbjct: 561 KLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600 >gi|222056612|ref|YP_002538974.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221565901|gb|ACM21873.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 392 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K + S L L L + + H+I +P+ +I ++L+ + E ++ + Sbjct: 166 LQKAQAEIVQSEKLATLGYLSAGMAHEIRNPLNSISLFVQLIKSGMDDPEKLEYVDKIVK 225 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGE 107 L V + + ++ I + K + Sbjct: 226 EIDRIDGILRKLLDASNRPKFEIRDVLIHQVIDNTLEIFSPQIQLHKITVNRDYRNIPPA 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ + + G + + + + + G E + Sbjct: 286 IKADPSELEQIFTNLFLNSINEMASEGTLGVFLDYDRQYITIRVSDTGTGIPV-ENVPYV 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + K ++ E D L Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKNYKGKIEVEKSDATGTTFCVKLP 391 >gi|229085487|ref|ZP_04217725.1| hypothetical protein bcere0022_21000 [Bacillus cereus Rock3-44] gi|228697792|gb|EEL50539.1| hypothetical protein bcere0022_21000 [Bacillus cereus Rock3-44] Length = 588 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 345 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINQEDQNKYFDLMLSEIE 404 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------ID 110 +F+ +A ++ + V+ + Sbjct: 405 RIESILHEFLSIAKTDVIPIEKKNICSILRNVVSLINTKAIMTNIQINLHIESKELLIDC 464 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG ++IS++ S+ E + + G E+ ++ + Sbjct: 465 CENQLKQVFINILQNSIEAMPNGGTISISMKKSEREEVVIHIVDEGVGI-PEERIKRLGE 523 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ R+ ++ L Sbjct: 524 PFYSTKEKGTGIGLMLSYKIIESHQGRISIMSEVGRGTSVTIYLP 568 >gi|78042822|ref|YP_360841.1| extracellular solute-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994937|gb|ABB13836.1| extracellular solute-binding protein, family 3/sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 656 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--- 56 K++ ++ L+ L + H+I +P+ + + LELL + + + Sbjct: 420 KKSLELMINRDKLITVGQLVAGFVHEIKNPLFTVKSYLELLPLKANDPAFREEVINILKN 479 Query: 57 -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKI 109 L + R V + + ++E + + Sbjct: 480 ELDNVQKLINDLLNYARPQNSKKEIVVLEEVIAPLLNLLEPQFIAKQITVFKENLGFAVY 539 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + +NL + A ++ G++ I + ++ ++ G I + Sbjct: 540 ADPMQLRHVFMNLLLNAIDAIQDKGEIKIKAAEYGDKIKIEVQDTGIGIPPQYLNQ-IFN 598 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S D + I L EN +L + + L K Sbjct: 599 LFFTSKKDGNGIGLAICQKLIQENGGSILVDSTPGAGTTFTIFLPK 644 >gi|323701987|ref|ZP_08113656.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533073|gb|EGB22943.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 522 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 +A+ S L+AL L + + H++ +PIG I +E++ E + + Sbjct: 274 LAEKEKLEDQLRRSEHLIALGRLATGVAHELRNPIGIIKTLVEIMKEEYSQLSGIDEFTR 333 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + R + + + L V+ + Sbjct: 334 AVEEQVDRQNMVIQELLDFGRPTKVASKECSVNDLLNGVLSFSAAVLRKQKIKVRLNLQP 393 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ +NL + A ++P GG + I + N+ + G E+ Sbjct: 394 DLPSIFADVDKLKQVFVNLIINASEAMPNGGILEIKSYNVDNQLVVQFVDTGEGIPPEEQ 453 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + L Sbjct: 454 S-RIFDPFYTTKPTGTGLGLSISYQNIKLHNGTIEVDSSPGQGTTFTIKLP 503 >gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing protein [Aromatoleum aromaticum EbN1] gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and histidine kinase domain of putative two-component sensor [Aromatoleum aromaticum EbN1] Length = 918 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLS 56 + L +D L S + H++ +P+ +I E+L + + +I Sbjct: 671 RAANERLKELDRLKDDFMSSVSHELRTPLTSIRAFSEMLLDDPDIALPDRMRFLGIIVSE 730 Query: 57 SMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + Q+ D A + V Sbjct: 731 TERLTRLVNQVLDLAKIESGHAEWHNSDIDMRALVEQAVDTTAQLFRDRGATVELVLPDE 790 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP-- 161 +++LNL A +P+G S+ + + NG Sbjct: 791 APHLKADHDRLVQVMLNLLSNAAKFVPQGAGRIRVALKSEAGQVRVEVSDNGPGIPPELH 850 Query: 162 -EKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G E + + RL E H V + +L Sbjct: 851 GVIFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWVESPPGHGTVFTFVLP 905 >gi|163939241|ref|YP_001644125.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163861438|gb|ABY42497.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 498 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111 + + T ++ + I + I + + Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSESNLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 494 >gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 808 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI LL + ++ M ++ ++ Sbjct: 581 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVQEENPEEREQYMAIVEENNE 638 Query: 59 SAIIRL--------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + +D + D+ +V++ V + Sbjct: 639 LLLQLISDILDLSKMEAGTFDFVERELDVNLLCEDMVRVMKLKAKPGVEVVFDRHLPECV 698 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ +R +++ N A G + F + G ++ Sbjct: 699 IASDRNRLNQVIANFINNAIKFTAIGSIRLGYDRIDAGHLRFYVADTGIGIMQEKQAEIF 758 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + E L Sbjct: 759 DRFVKLNSFVHGTGLGLSISKSIVEQLGGTIGVESEPGKGACFWFTLP 806 >gi|254726165|ref|ZP_05187947.1| sensor histidine kinase KinD [Bacillus anthracis str. A1055] Length = 498 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494 >gi|162456391|ref|YP_001618758.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161166973|emb|CAN98278.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 498 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 68/228 (29%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +++ ++S L A+ + + + H+I +PI I ++ + + + E+ + + + Sbjct: 258 LSRTEADLVASERLAAIGRVAAGVAHEINNPIAVIRGYVKTMAKEAEKPELREELSILDE 317 Query: 56 ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKI 109 A L + R V + L D + + + Sbjct: 318 EAAACQRIAEELLMYARSPILSPRPVQAEELLMDAASHCDGGPGRRDQAPLVDAEPSFIN 377 Query: 110 DLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++NL A + +V + + + + G E + Sbjct: 378 VDPLRIRQVIVNLVANAREATSGTSEREEVIVRGRRQDDGYRIEVLDRGAGI-PAEARER 436 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + L + + E + L Sbjct: 437 LFEPFFTTRRDGTGLGLAVCYGLVTAHGGTIRAEPRPGGGSLFVIDLP 484 >gi|47566222|ref|ZP_00237250.1| sporulation kinase D [Bacillus cereus G9241] gi|47556775|gb|EAL15106.1| sporulation kinase D [Bacillus cereus G9241] Length = 498 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 62/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111 + + T ++ + I + I + + Sbjct: 333 INKIVSEFLILGKPTAIIEQTYDVRTILNEVTLIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNATHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGQIFINSIENEGTTVHIEIP 494 >gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 927 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI L+ E G +E Q + + + Sbjct: 700 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLMGETGDMEEKRQYMAIIEENND 757 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +D + DI + ++ V + Sbjct: 758 LLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMKAKPGVEVLFDRHLPECR 817 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + F + G PE QI Sbjct: 818 IVSDRNRLNQVIANFVNNAIKFTTAGSIRVGYNKVDETHLRFYVADTGLGI-EPEMQAQI 876 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + + + + +L Sbjct: 877 FDRFIKLNTFVHGTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 925 >gi|229060323|ref|ZP_04197689.1| hypothetical protein bcere0026_24230 [Bacillus cereus AH603] gi|228718913|gb|EEL70530.1| hypothetical protein bcere0026_24230 [Bacillus cereus AH603] Length = 579 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 68/226 (30%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS 57 K S L A+ L + + H++ +P+ I ++L +++ E ++ Sbjct: 332 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110 I +F+ +A + + + V+ + Sbjct: 392 RIESILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 451 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ G + KN + S+ G E+ ++ + Sbjct: 452 SENQLKQVFINILQNSIEAMLNGGEISIHIKEIHKNGVVISVIDEGIGI-PEERIKRLGE 510 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 556 >gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 940 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI L+ E G +E Q + + + Sbjct: 713 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLMGETGDMEEKRQYMAIIEENND 770 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +D + DI + ++ V + Sbjct: 771 LLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMKAKPGVEVLFDRHLPECR 830 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + F + G PE QI Sbjct: 831 IVSDRNRLNQVIANFVNNAIKFTTAGSIRVGYNKVDETHLRFYVADTGLGI-EPEMQAQI 889 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + + + + +L Sbjct: 890 FDRFIKLNTFVHGTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 938 >gi|317487012|ref|ZP_07945820.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316921694|gb|EFV42972.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 585 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 20/226 (8%) Query: 8 NLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 L S LVAL + + I H++ +P+ AI E E + Sbjct: 358 RLQSELRRRDRLVALGNMAAGIAHEVRNPLSAIKGLARFFMEASPEGSDESRMADIMTRE 417 Query: 61 I--------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEK 108 + L F R V + ++ + K Sbjct: 418 VLRLDKVVGDLLDFARPDVLNLTDVGLNELVERARDMVRSDMDARKIRFEAELPEPPLSV 477 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++LLNLF+ A ++P GG++ + + E + G PE+ I Sbjct: 478 RLDRDRMTQVLLNLFLNAVQAMPDGGRLMVRARMEGTELALDVADTGCGI-APERLADIF 536 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + V Sbjct: 537 SPYFTTKASGTGLGLSIVHKIVEAHDGTIEVASTPGEGTVFKLRFP 582 >gi|315604747|ref|ZP_07879810.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313759|gb|EFU61813.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 480 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSR-----ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI 53 +A + L ++ A++ R + H++ +PI + +ELLD + + L+ Sbjct: 241 LAAAVNRMLDRVE-RAVVARRELLDDVSHELRTPITVVRGHMELLDPSDHADVVDTRALV 299 Query: 54 RLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 I +K + VD + D + S Sbjct: 300 IDELDRMGILVKDLLELARASDAVAPTPVDLAALTDAVVDKASALGDRDWVLDASAHASC 359 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 S + L L A +G +V I + + ++ G + Sbjct: 360 SLDSARMTQAWLQLAQNAVQYSAKGTEVGIGSRVEGDVARMWVRDRGEGIAPQDIERVRG 419 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V G + + V +A + RL E + ++ Sbjct: 420 RFVRGVGAERVSGSGLGLSIVESIARAHGGRLDIESTLGEGSTFTLVIP 468 >gi|289433253|ref|YP_003463126.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946973|gb|ADC74670.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1092 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---- 53 + + L A+ + + I H+I +P+ + ELL E + ++ Sbjct: 715 QQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLEREDLPDDIKANLKII 774 Query: 54 ----RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK 108 + + L F R V+ + ++ + ++ + Sbjct: 775 NDGSQRAKEIIKRMLTFARQTTPQMSRVNITELINHTLELRNYVLATANIKIVKDYDATL 834 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + + ++ LNL + A ++ + TI + S+K +G Sbjct: 835 PWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILTIKTEKLDGYVRISVKDDGPGMPEG- 893 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E+ + E + L Sbjct: 894 IRKKLFQPFFTTKEPGEGTGLGLSLSLGIIQEHTGTIRAESEEGKGTTFIIELP 947 >gi|86157319|ref|YP_464104.1| osmosensitive K+ channel signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773830|gb|ABC80667.1| osmosensitive K+ channel signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 902 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 64/231 (27%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 A+ + +L + L S + HD+ +P+ AI + LL + + E++ + Sbjct: 654 ARRSALRARTEELRSGLLSAVSHDLRTPLAAITGASTLLLDAAVADPAVRRELVATVVEE 713 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SWTG 106 + + + V + + Sbjct: 714 AERLERLVSDLLDMTRLDSGVVEPRREWVPLVEVVGAAMNRVERALGNRPVAIALRDDLP 773 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L+NL A P G +++++ + + G E+ + Sbjct: 774 LLSIDPILIEQLLVNLLENATKYTPPGTEISVAAVREGGTLVIEVADRGPGIPAGEE-ER 832 Query: 167 IVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + +A + RL V L Sbjct: 833 IFERFHRAARPGVRGVGLGLPIARAIAQAHGGRLTAASRPGGGSVFRLTLP 883 >gi|49480080|ref|YP_035560.1| sensor histidine kinase; sporulation kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331636|gb|AAT62282.1| sensor histidine kinase; possible sporulation kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 498 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRSILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETRAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494 >gi|73749292|ref|YP_308531.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73661008|emb|CAI83615.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1092 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---- 53 + + L A+ + + I H+I +P+ + ELL E + ++ Sbjct: 715 QQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLEREDLPDDIKANLKII 774 Query: 54 ----RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK 108 + + L F R V+ + ++ + ++ + Sbjct: 775 NDGSQRAKEIIKRMLTFARQTTPQMSRVNITELINHTLELRNYVLATANIKIVKDYDATL 834 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + + ++ LNL + A ++ + TI + S+K +G Sbjct: 835 PWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILTIKTEKLDGYVRISVKDDGPGMPEG- 893 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E+ + E + L Sbjct: 894 IRKKLFQPFFTTKEPGEGTGLGLSLSLGIIQEHTGTIRAESEEGKGTTFIIELP 947 >gi|320353304|ref|YP_004194643.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121806|gb|ADW17352.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 570 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 74/231 (32%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + + L + L A+ L + I H+ +P+ I + L+ L + + +++ Sbjct: 334 LQETQRQYLHAEKLSAIGKLSASIAHEFNNPLQGILSILKGLKKRAILEEEDRVLLEAAI 393 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDL 111 S ++ ++ + +++ + ++ KR+++ + Sbjct: 394 AESDRIKELIRQLQDFNRPSSDRKAVVDVHQSLNSVLLLHTSDFKGKRIELRLDYAERLP 453 Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFT 165 + ++ LNL A + G V + +++ NG PE Sbjct: 454 HILAVPDQIKQVFLNLLANAADACRPSGGVITVTTRLVDDRVAVTVEDNGIGI-VPEDMD 512 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + +++ + E + LL Sbjct: 513 LIFQPFYTTKPEVKGTGLGLSVSYGIVKDHQGEIRVESRPGEGARFTVLLP 563 >gi|266620607|ref|ZP_06113542.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479] gi|288867785|gb|EFD00084.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479] Length = 365 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 55/215 (25%), Gaps = 17/215 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA------- 70 + + H++ +P+ AI N +LL + + + S + Sbjct: 139 FAANVSHELKTPLAAIQNYAQLLGTTELTPKQQEYTERILSSTQRLTSLIYNILKLNKLE 198 Query: 71 FGYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L + ++ + + NL Sbjct: 199 SQKIHPKPEPYDLCRQLSDCAIGFEAIWEQKKINFEADMEDRAVIEADEELMELVWNNLL 258 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHD 180 A GG V++ + + + G F + G+ + + + Sbjct: 259 SNAFKFTKSGGTVSLRQFSDEERIVTEVGDTGCGMTPEMMKHMFDKFYQGDTSHSTEGNG 318 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V+ + + + + V + L + Sbjct: 319 LGLALVLRVLEMSGGTITVNSTEGKGTVFTVSLPR 353 >gi|148264739|ref|YP_001231445.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398239|gb|ABQ26872.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 438 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 21/224 (9%), Positives = 63/224 (28%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 L + + +R+ H++ +P+ I + ++L + E+M + + Sbjct: 211 RNEMRKKERLATMGEVVARVAHEMRNPLFGITAAAQILAMELKLTAPQKELMNSLFTEAR 270 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKID 110 ++ + + L F V ++ + Sbjct: 271 RMNHLVEELLDCSKEMILKKTPFDLVKALNESLSFNEVFIIEKKLNLQKRLPDGELTVVA 330 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++++N+ A + GG + + + + + + +G + +I D Sbjct: 331 DPERVRQVMVNILKNAVDATATGGTIAVGLVKTGGDVSIHVTDSGPGI-ADDAIEKIFDV 389 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + L + L Sbjct: 390 FYTTKKHGTGLGLSISRKIADAHDGALTASNNAGGGATFTFTLP 433 >gi|153004717|ref|YP_001379042.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028290|gb|ABS26058.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 600 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + + L + L A+ L + H+I +P+ I + +LL E + E ++ I Sbjct: 360 LREAQAQLLEAQKLAAIGQLGAGAAHEINNPLTGILGNAQLLLEAMPRSNPDRESVEKIE 419 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105 + + + D + + + Sbjct: 420 ALARRCRDITQKLIRFSQQRAEPDFRELDANRVVAEALALVDGHLRAGGIPLDVSLAEPS 479 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163 A+++LNL A + + I+ + + + + G PE Sbjct: 480 PRVKGDPGHLAQVVLNLLSNARTACAGRPGAGIRIATRRAGGDVEIVVSDGGKGI-APEH 538 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E+ R+ E + L Sbjct: 539 LPRIFEPFFTTKDQWSNVGLGLSVSYRIVAEHGGRIDVESRAGEGSTFTVRLP 591 >gi|229043175|ref|ZP_04190899.1| hypothetical protein bcere0027_12290 [Bacillus cereus AH676] gi|228726182|gb|EEL77415.1| hypothetical protein bcere0027_12290 [Bacillus cereus AH676] Length = 508 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ +TI V++++ + G + Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTAVHIEIP 504 >gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] Length = 614 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 23/224 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66 +L + L S + H++ +P+ +I ++LL + + E + +I +S + Sbjct: 389 NLKSELLSIVSHELRTPLTSIRGYVDLLKDETAGKLNDKQHEFILIISENSDRLKRLIDN 448 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------WTGEKIDLSRERA 116 M V + I + + Sbjct: 449 MLDLVKVENEVLDFKFNKLNIKNTVGEIISSLKYFADSKNIILLEDVDEVYIKGDKSKIN 508 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--- 173 ++L NL A KVT+ + K + G E +I + + Sbjct: 509 QVLANLIENAIKFSKNQTKVTVIGFEDKENLHLEITDQGPGI-PKENLEKIFEKFYQIDS 567 Query: 174 ---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E + LL Sbjct: 568 SSKREIGGSGLGLAVCKKIVESHGGSIWVESKVGKGTSVHILLP 611 >gi|297545524|ref|YP_003677826.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843299|gb|ADH61815.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 470 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MAK + D+ + + H++ SP+ +I ++ + + + +++++ Sbjct: 237 MAKELE---QLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPVEKACDYLKIVQKE 293 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107 + + + D + + + D V+V + + Sbjct: 294 TRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++ ++L NL A G + I + ++ ++K NG + Sbjct: 354 RRIVIADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDDKVFITIKDNGIGISPEDQE 413 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + Y V + + + + E + L Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLP 466 >gi|289579383|ref|YP_003478010.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] gi|289529096|gb|ADD03448.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] Length = 470 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MAK + D+ + + H++ SP+ +I ++ + + + +++++ Sbjct: 237 MAKELE---QLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPVEKACDYLKIVQKE 293 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107 + + + D + + + D V+V + + Sbjct: 294 TRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++ ++L NL A G + I + ++ ++K NG + Sbjct: 354 RRIVIADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDDKVFITIKDNGIGISPEDQE 413 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + Y V + + + + E + L Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLP 466 >gi|311032452|ref|ZP_07710542.1| sporulation kinase B [Bacillus sp. m3-13] Length = 419 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%) Query: 1 MAKNICF-NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----------IEDE 48 M + +V+ L + + H++ +P+ + L+L+ + I E Sbjct: 188 MQLQHELQRSEKLKVVSELAASVAHEVRNPMTSTRGFLQLMSQDDNLNGSQKRYIDISIE 247 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + K + L + + + R ++ Sbjct: 248 ELDRAQSIIQDYLSLAKPNKQGMDKINVSKELEHVIQLMSTYTALNNTNIRQEIEGELYI 307 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++L+NL ++ + G VT+ K + ++ NG + ++ Sbjct: 308 KANKDEMKQVLINLIKNGIEAIDKDGTVTVKAFSFKGMVLIEIRDNGVGMTPQQV-ERLG 366 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + ++ + + L Sbjct: 367 TPFYSTKDKGTGIGLTISFQIIELLQGKIEVTSEVGKGSIFTIKLP 412 >gi|295425530|ref|ZP_06818221.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664] gi|295064783|gb|EFG55700.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664] Length = 618 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ +E L + I + +Q+ + + I + + Sbjct: 379 QFVSNVSHELRTPLTSLRAYIEALNEGAWKDPTIAPQFLQVTQEETERMIRMINDLLSLS 438 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112 V + I + V + Sbjct: 439 RMDRGVSKMDLEWVNLNDFVSHILNRFDMIVKTDKNTDKKKKYTIRRELGNQALWVEIDT 498 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + +++ N+ A P GG +T+ + ++N I S+ G + F + Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLVQNQNHVILSISDQGLGIPRKDLGKIFDRFYR 558 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + + + L Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGNGSTFYISLP 605 >gi|162450707|ref|YP_001613074.1| putative sensor kinase [Sorangium cellulosum 'So ce 56'] gi|161161289|emb|CAN92594.1| putative sensor kinase [Sorangium cellulosum 'So ce 56'] Length = 341 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 68/236 (28%), Gaps = 27/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + + +L A S++ H++ +P+ +I E L + ED ++ + Sbjct: 72 LRRERNLS----ELQADFVSKVSHELRTPLTSIRMFTETLTLRRGDTISEDRCIEALTKE 127 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGE 107 S + + + VS Sbjct: 128 SARLQQLIDRLLDWGRMESGRRVYELSEHHLGEIADEAIHAFEPTREKRSVDLDVSIDAN 187 Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +R+ ++ + A+ + K+++S + +++ NG E Sbjct: 188 LPPVLCDRSALVDAIVNLLSNAYKYGGQPRKISVSAHVLNRSAMLTVRDNGKGIARAE-H 246 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + ++L + + +L Sbjct: 247 KRIFEKFYRVDDLLARQQEGSGLGLSIVKHVIRAHGGKILVDSEPGKGSTFTLVLP 302 >gi|110598804|ref|ZP_01387063.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339594|gb|EAT58110.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 679 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 18/231 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +++ + L A+ L S + H+I +P+ AI + LD E + Sbjct: 449 QRSMQRVIERQEKLTAMGELASGVAHEIRNPLNAIGVLGQRLDMEFSPAEEREEYHHLVR 508 Query: 56 ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSW 104 ++ + L D + + V + Sbjct: 509 AIVSEVHRVNAIIQRFLKFARPPKLMLMPTDLDDFIRQYRPVLEGEAETVGVRFTLTAFS 568 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++LLNL A + GG+VT+ + G E Sbjct: 569 GCQISIDRAQMQQVLLNLVRNAVEATEPGGEVTVMTGQRTGSAFIEVADTGRGI-PEELR 627 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +QI + S D + + + + E +++ + +L + Sbjct: 628 SQIFNLYFTSKEDGTGMGLSIANQIVQSHGGVIEVESLENRGSIFRIVLPR 678 >gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297] gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297] Length = 773 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 57/217 (26%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-----------------SAII 62 + + H++ +P+ AI S++LL ++ + + I + Sbjct: 409 ANVSHELRTPLNAIQGSVDLLSHSSQDESLKEPIDMIQHSSSFLLFLINDILDLAKLNAD 468 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 L F GS+ + + + + + + +++ NL Sbjct: 469 MLTIDEQPFNLHGSIQQICSIYSNSLANNAQTRFELTISPDVPTWIVGDEKRLEQVIANL 528 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTID 177 A +G + + S++ G + D ++ Sbjct: 529 LSNAFKFTEKGKVTCRLTLKDTHTLMISVQDTGIGIKPDNLDAMFAAFTQADSSISRKYG 588 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 589 GTGLGLRISSKIIEQMGGEIWAESETGQGSTFTFTLP 625 >gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 785 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 57/224 (25%), Gaps = 25/224 (11%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 A L + H+I +P+ +I ELLDE E ++ + RL + Sbjct: 555 AAFLA-NMSHEIRTPLNSILGFAELLDEQLAASGQESLREFTGIIQRSGRRLLRLINDIL 613 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWTGEKIDLSRERAK 117 +++ + E I + V + + Sbjct: 614 ELSRLEADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVHTEAVPPVLGDPHRLHQ 673 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEKFTQIVD----G 170 I+ NL A +G + ++ + + + G Sbjct: 674 IVTNLVGNALKYTEQGEVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQRAP 733 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + R+ E + + Sbjct: 734 SENDRSEGSGLGLAITKRLVEQMNGRITVESAPGNGTTFTVTFP 777 >gi|119944999|ref|YP_942679.1| sensor histidine kinase PAS domain-containing protein [Psychromonas ingrahamii 37] gi|119863603|gb|ABM03080.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas ingrahamii 37] Length = 506 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 19/231 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG---------IEDEV 49 + + L S L AL + I H+I +P+ ++ + L E G E Sbjct: 275 QRKLEVELRQSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFLMEEGLPLEFRTECAEKIQ 334 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + L + S + + + VD L + +I + V K V K Sbjct: 335 VSLEKASCIIENLLRFSRPSSEQNMVPVDLDTVLCETIMLIANQAKVYKIEIVYQPIGKC 394 Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ +N F+ A ++P GGK++I ++ +E ++ G Sbjct: 395 GSVSGIFTLLQQVFMNFFLNAINAMPHGGKLSIILEQQNDEARICIRDTGTGILEGAL-D 453 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D S+ + + +++ + + + + LL Sbjct: 454 NIFDPFHTSSPAGKGVGLGLSLCYSIVKQHRGSISVDSMLGKGSTFTVLLP 504 >gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 565 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 69/224 (30%), Gaps = 23/224 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + IED+ + +I + + + Sbjct: 343 EKIRSDFVANVSHELKTPLTSIKGFVETLKDGAIEDKEIAGKFLNIIEVEVERLVRLIND 402 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + L ++ + + + ++++ + Sbjct: 403 LLYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLDDKLKMKIHKDWL 462 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I +NL A G+V I V+ + +K G E +I + Sbjct: 463 KQIFINLIDNAIVYNRENGEVIIEVERLDEKIAIRVKDTGIGIPQNEI-ERIFERFYRVD 521 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + V + ++ + + ++ Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSEVGKGSEFTIVI 565 >gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 657 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + ++ + + H+I +P+ AI E++ + + E +++I+ +S + + Sbjct: 299 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 358 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + F + + + Q+ K ++ Sbjct: 359 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 418 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 ++L N A + +G + + + G + Sbjct: 419 MQVLFNFLSNAIKNTEKGSITLGLKHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKLND 477 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 478 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLP 517 >gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 637 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + ++ + + H+I +P+ AI E++ + + E +++I+ +S + + Sbjct: 279 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 338 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + F + + + Q+ K ++ Sbjct: 339 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 398 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 ++L N A + +G + + + G + Sbjct: 399 MQVLFNFLSNAIKNTEKGSITLGLKHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKLND 457 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 458 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLP 497 >gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 635 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + ++ + + H+I +P+ AI E++ + + E +++I+ +S + + Sbjct: 277 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 336 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + F + + + Q+ K ++ Sbjct: 337 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 396 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 ++L N A + +G + + + G + Sbjct: 397 MQVLFNFLSNAIKNTEKGSITLGLKHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKLND 455 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 456 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLP 495 >gi|229022894|ref|ZP_04179414.1| hypothetical protein bcere0029_12400 [Bacillus cereus AH1272] gi|228738429|gb|EEL88905.1| hypothetical protein bcere0029_12400 [Bacillus cereus AH1272] Length = 465 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 60/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 299 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V + Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDQPVHILCS 359 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKYAQLQIIDTGKGIPKY-IQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461 >gi|161506706|ref|YP_001576656.1| putative histidine kinase [Lactobacillus helveticus DPC 4571] gi|160347695|gb|ABX26369.1| putative histidine kinase [Lactobacillus helveticus DPC 4571] Length = 618 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ +E L + I + +++ + + I + + Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETSRMIRMINDLLSLS 438 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112 V + I + V + Sbjct: 439 RMDRGVSKMDLEFVNFNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 498 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + +++ N+ A P GG +T+ + S+ I S+ G + F + Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 558 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + L Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRVWADSSEGKGSTFYISLP 605 >gi|156742122|ref|YP_001432251.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156233450|gb|ABU58233.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 819 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS- 57 + + S L A+ L + + H++ +P+ +I +L L + + + + ++ + Sbjct: 419 RRLEEQLIRSEKLSAIGQLVAGVAHEVNNPLTSISGYTQLMLRDTSLSPGIREDLQHINT 478 Query: 58 ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L F R VD L + + VD V+ + Sbjct: 479 QAERAARIVQNLLMFAREHKPQRTLVDINQVLQSTLTLRAYQLRVDNITIVTDFAPNLPQ 538 Query: 112 ----SRERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKING 155 + ++ LNL AH ++ + ++ G Sbjct: 539 TVADPHQLQQVFLNLINNAHQAMTERGGKGTLTLRTSVEPCVGEGNREERCIRIAVSDTG 598 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + + E+ RL E + L Sbjct: 599 VGISPRNLS-RIFDPFFTTKPVGQGTGLGLSICFGIIQEHHGRLWAESEVGVGTTMYVEL 657 Query: 214 E 214 Sbjct: 658 P 658 >gi|301052974|ref|YP_003791185.1| sensor histidine kinase [Bacillus anthracis CI] gi|300375143|gb|ADK04047.1| sensor histidine kinase; possible sporulation kinase [Bacillus cereus biovar anthracis str. CI] Length = 498 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494 >gi|283853389|ref|ZP_06370635.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283571202|gb|EFC19216.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 504 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 68/233 (29%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + ++ + S L L + + H I +P+ ++ L L+ ++ + + + Sbjct: 263 LEQSRGHLMQSEKLAMAGRLAAGVAHTIRNPLTSVKMRLFSLERGLKLDPSQQEDFEVIA 322 Query: 58 MSAIIRLKFMRLAFGYTGSVDS--------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 +R + + + + + + V V + Sbjct: 323 EEIGHIDTIVRNFLEFARPPKLTAQPVGLSDVVDTALVLLKHRLESYNVEVTVDRSRPLP 382 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFP 161 ++S + ++ L A ++ GG + I + + + +G Sbjct: 383 EISADPDQLKEALVNLVLNACEAMVEGGSIRIREEVGLLEPYGHVLAVRVTDSGPGVPPG 442 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + E+ + + + + + Sbjct: 443 -LVERIFQPFFTTKGEGSGLGLPIVKRIVEEHGGWITVQSPEGRGATFTMVFP 494 >gi|220917160|ref|YP_002492464.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] gi|219955014|gb|ACL65398.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] Length = 747 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 17/230 (7%), Positives = 58/230 (25%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L AL + + + H+I +P+ AI +++ LD + ++ + + + Sbjct: 474 ERDRLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVNRLNGVV 533 Query: 68 RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Y+ + L ++++ + R+++ + + ++ Sbjct: 534 TQFLDYSRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQLKQ 593 Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164 +A + + + + G + Sbjct: 594 VFLNLALNAFQAMPRGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGI-PDDAR 652 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + ++ L Sbjct: 653 ESIFVPFYTTKEKGTGLGLAICQRIVKAQQGTIVVRSAPGEGAEFLIALP 702 >gi|262276178|ref|ZP_06053987.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262219986|gb|EEY71302.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 684 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + L + L AL L + I H+I +P I ++EL++ V Sbjct: 434 LEQTRNKLLLNEKLAALGELTAGIAHEINNPTAVILGNIELMEYELGDNAKLVSEEIAMV 493 Query: 50 MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ I L++ R + + + + ++ +++ Sbjct: 494 LEQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIEESVTLVRSGTKKSDIEVVTELNA 553 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLA 158 + ++L+NL M ++ + + S++ G Sbjct: 554 KCCVEINRHQLLQVLVNLQMNGIHAMNEKGRLVVRSEDWLDENGHPMGATISVQDFGCGI 613 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E T+I D + + + + E + L Sbjct: 614 -ANENLTKIFDPFFTTRRSGTGLGLAVTHGIVSGLGGEIKVESELGKGSTFTLYL 667 >gi|229155001|ref|ZP_04283115.1| hypothetical protein bcere0010_11950 [Bacillus cereus ATCC 4342] gi|228628559|gb|EEK85272.1| hypothetical protein bcere0010_11950 [Bacillus cereus ATCC 4342] Length = 465 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 60/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 299 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 359 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNATHAQLQIIDTGKGI-PKHIQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ I++ + + Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGQIFINSIENEGTTVHIEIP 461 >gi|171915807|ref|ZP_02931277.1| sensor protein ZraS [Verrucomicrobium spinosum DSM 4136] Length = 399 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53 K + S + AL L + + H++ +P+ ++ L+LLD + +++ Sbjct: 137 RKLTEEKIESERISALTMLAAGVAHELGNPLNSLTIHLQLLDRRLRKLKAAEAGRLREMV 196 Query: 54 RLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 ++ + V + + + + V++ T Sbjct: 197 EVAQGEIKRLDFIIGQFLAAIRPTHPQLQRVQLNELIEEAVKFLAPELKQHKVEVRLDLT 256 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + + ++ GG++TI + E + G E Sbjct: 257 RSLPLMPLDANQMKQAFYNLIRNSMQAMGEGGRLTIISTFTDFEVRLTFADTGKGI-SGE 315 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + E+ + E + ++ L + Sbjct: 316 NLSNLFQPFFTTRKTGTGLGLLIVRRIIREHGGEIELESREGEGTKVNIYLPR 368 >gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] Length = 412 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 72/228 (31%), Gaps = 26/228 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67 ++ + + H++ +P+ +IH E L E +E+ +++I S + + Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTRLINDL 243 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117 VD + + ++I+ + + + Sbjct: 244 LDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVKGNKERLIQ 303 Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 +LLNL A KV + D+ + + ++ G E ++I + Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGI-PKESQSRIFEKFYR 362 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ ++ E + V+ L K Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPK 410 >gi|258515763|ref|YP_003191985.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779468|gb|ACV63362.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 627 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 73/224 (32%), Gaps = 12/224 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ LS ++L+ + + I H+I +P+ + L++L ++ + L Sbjct: 404 LAEKEMARLSQLNLIGEMAAGIAHEIRNPMTTVRGFLQMLGGKNGQERYQEYFNLMIEEL 463 Query: 61 II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 K L + + + + Q + +++ + + Sbjct: 464 DRANSIISEYLSLAKNKALELKISNLKPVIETVFPLIQADAMMNDKNIYMELQDVPDLLM 523 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +E ++LLN+ ++ +TI + NE + ++ G PE +I Sbjct: 524 DEKEIRQLLLNIVHNGLQAMTARKILTIRLCRDGNEVVLAVHDEGKGI-NPEILDKIGTP 582 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + ++ E + Sbjct: 583 FFTTKDTGTGLGLATCYSIATRHNAKINIETNS-EGTTFFVRFK 625 >gi|328952178|ref|YP_004369512.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452502|gb|AEB08331.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 465 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 18/228 (7%) Query: 1 MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 M + + S L A+ S I H+I +P+ I + LL ++ + +Q + + + Sbjct: 231 MEERLR---QSERLAAVGNTISHIVHEIKNPLMIIGGFAQQLLKAGTLDTKGLQKLAIIA 287 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKI 109 M Y+ G+I ++++ I + + + Sbjct: 288 EEVSRLETLMAEMKDYSRPPALKRQSGEIAGLLQEVIQLYSENLKEKNITLTLEPPDPMP 347 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 S + ++ L A ++P GG++TI+ ++ G + Sbjct: 348 LCSLDYQQLKQVLMNLIKNASEAMPSGGRITITAHRRPPYFEIAVADTGEGM-TSDVVEH 406 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + L V + L Sbjct: 407 IFTPYYTTKTKGSGLGLAISRNIVQAHNGNLEVVSQPGKGSVFTIKLP 454 >gi|303245735|ref|ZP_07332018.1| multi-sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492998|gb|EFL52863.1| multi-sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 685 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 26/247 (10%), Positives = 63/247 (25%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIR 54 + + + S + +L L + H+I +P+G I +LL + +Q I Sbjct: 422 LKQFQEQLIQSQKMESLGKLAGGVAHEINTPLGVILGYAQLLQDDVPTDSQIHADLQTIE 481 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 + + + S + + V F + Sbjct: 482 KQAKVCRKIVADLLGFSRQAESAKIEMCFNNSLMEAITLVRHAFSLEHAAIVTDLDDRMP 541 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ +NL A ++ G + + + G PE Sbjct: 542 IIYGDPEKLKQVWINLLSNARDAMGWQGGTLLVRSRLFVADQKVTAWFADTGPGI-PPEN 600 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI--------------IDDHNV 207 ++I D + + + ++ + + Sbjct: 601 CSRIFDPFFTTKPVGQGTGLGLSVSFGIIQDHGGSISVQSPVPQGFFDNVDTGGAPGPGA 660 Query: 208 VLSALLE 214 V L Sbjct: 661 VFIVDLP 667 >gi|194016316|ref|ZP_03054930.1| sensor protein YycG [Bacillus pumilus ATCC 7061] gi|194011789|gb|EDW21357.1| sensor protein YycG [Bacillus pumilus ATCC 7061] Length = 612 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 70/220 (31%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ + + LE L + + + + + + I + + Sbjct: 381 FVANVSHELRTPLTTMRSYLEALAEGAIGDKELAPRFLSVTQNETERMIRLVNDLLQLSK 440 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + +T + + + D ++ ++ R + ++L N Sbjct: 441 FDSKDYQFNREWTNFIKFISLVIDRFEMTKEQHVDFIRNLPQREIYVEIDQDKITQVLDN 500 Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VES 174 + A P GG +T +V + +FS+K G + F + + Sbjct: 501 IISNAMKYSPEGGHITFTVDLDEENGLVLFSVKDEGIGIPKKDMDKIFERFYRVDKARTR 560 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + I+ ++ L Sbjct: 561 KLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600 >gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 579 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M + + + + H++ +PI +I E L ++ E + +I Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S ++ + + + + + ++ Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPK 456 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +S + ++ LNL A P GG V I+V+ + + + +G + E Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEI 516 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + V L ++ ++ V + L++ Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTLKR 573 >gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis] gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis] gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 579 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M + + + + H++ +PI +I E L ++ E + +I Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S ++ + + + + + ++ Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPK 456 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +S + ++ LNL A P GG V I+V+ + + + +G + E Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEI 516 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + V L ++ ++ V + L++ Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTLKR 573 >gi|229132230|ref|ZP_04261086.1| hypothetical protein bcere0014_11680 [Bacillus cereus BDRD-ST196] gi|228651168|gb|EEL07147.1| hypothetical protein bcere0014_11680 [Bacillus cereus BDRD-ST196] Length = 465 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 299 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111 + + T ++ + I + I + + Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSESNLHNIVFHLHLPDHPVHIRCS 359 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461 >gi|328956406|ref|YP_004373792.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] gi|328672730|gb|AEB28776.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] Length = 614 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++ + LE L + I + +++ + + I +K + Sbjct: 381 FVSNVSHELRTPLTSMRSYLEALLDGAWKDPEIAPQFLKVTQEETDRMIRMIKDLLDLSR 440 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------------SWTGEKIDLSRER 115 +L + D + + + + + Sbjct: 441 MDSGKGTLDLEYLNVNELFDHVIKRFEMMIQSSDESSKDFSIKRNFTDRQLWVEVDADKM 500 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++L N+ A P GG +T + ++ + + S+ G + Sbjct: 501 IQVLDNIMNNAIKYSPDGGTITCGLVETNDSVVLSISDEGLGIPKRDLANVFDRFFRVDK 560 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + H++K ++ E + L Sbjct: 561 ARARSMGGTGLGLAISKEVVHQHKGKIWAESTEGKGTTFYISLP 604 >gi|322382238|ref|ZP_08056151.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153819|gb|EFX46187.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 385 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 21/231 (9%) Query: 3 KNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEV 49 +++ + D ++ + + H+I +P+ +I L++L E G D + Sbjct: 155 RSLEAQVQRSDRLAMIGQIAAGTAHEIRNPLTSIKGFLQMLNKSFTEQGMCKEKGFTDIM 214 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + I + L + VD + + +I + + V + Sbjct: 215 LAEIDRVNDLVNEFLLLSKPKHVVYKPVDLPSVIKGLLPIINNEAILHDVQLVYEPAISL 274 Query: 110 DLSRERA----KILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ LN+ ++ + V + ++ NG Sbjct: 275 PPVIADQELLKQVFLNICKNGIEAMANGGKLMIIEKVNIDEKRVNIEIRDNGPGIPV-FV 333 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + H+ + + L Sbjct: 334 LDKIFDPFFTTKEQGTGLGLSVCQQIVHDMGGHIRV-SSKGFGTTFTVSLP 383 >gi|39996107|ref|NP_952058.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39982872|gb|AAR34331.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|298505123|gb|ADI83846.1| nitrogen fixation master sensor histidine kinase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 363 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 67/221 (30%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAIIRLKFMRL 69 L + + H+I +P+G I + +LL+ +++ + + L Sbjct: 141 LAAGLAHEIKNPLGGIKGAAQLLELELPTESELRDNVRIMLKEVERVNRIVEELLALASP 200 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRER---AKILLNLFMV 125 V+ +GDI + + + Q + + + ++ LNL Sbjct: 201 RGLQLSKVNLHKVIGDILTLQKRSTEGKNVAFQQQFDPSIPPILADEGLLTQLFLNLVKN 260 Query: 126 AHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 A ++ GG +T + + +G PE+ Q+ Sbjct: 261 AMEAVDDGGCIRVASRVISDYSMTQKGERRSRMVAIDVADDGPGI-PPERLEQLFTPFFT 319 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + E + +L Sbjct: 320 TKTKGTGLGLAICQKIVTEHRGMIKVESYPGKGTTFTVMLP 360 >gi|313680469|ref|YP_004058208.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] gi|313153184|gb|ADR37035.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] Length = 478 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 58/234 (24%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRL 55 +A+ + L ++ + + H++ +PI AI + LL + + + + Sbjct: 237 LARALNRMLERLEHAFQTQSRFLADASHELRTPITAILGHVGYLLRRTPVNEVQRESLET 296 Query: 56 SSMSAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 K + V+ L +I + ++ Sbjct: 297 IRREGERMTKLVTDLLELAGSEGGWRFEVRPVELRGLLQEIASEYAPTFEGEIVLEAPDE 356 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162 ++ NL A + + + I + NG P Sbjct: 357 VWVEGDDERLHQVFANLIANAVKAGATRITLRVRRP--PGRVIVQVSDNGPGIPPEHLPH 414 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + E S L+ Sbjct: 415 LFERFYRVDKARDRAAGGSGLGLAIVKAIVEALGGEVWVESQVGEGTTFSVSLK 468 >gi|217958910|ref|YP_002337458.1| sensor histidine kinase KinD [Bacillus cereus AH187] gi|217067792|gb|ACJ82042.1| sensor histidine kinase KinD [Bacillus cereus AH187] Length = 498 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQITDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494 >gi|308068151|ref|YP_003869756.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|297185569|gb|ADI24141.1| sensor histidine kinase kin1377 [Paenibacillus polymyxa] gi|305857430|gb|ADM69218.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 367 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64 + L L + + I H+I +P+ AI ++LL DE ++I A + Sbjct: 144 QNDKLAMLGRISASIAHEIRNPLTAIRGFIQLLRPHLVELGRDEYARIILTEIDRANDII 203 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119 + + + + + + + + ++ + E + +S + +I Sbjct: 204 YEFLNSSKPSAPQKTAVSVMGLLKEVVMLTESEALMKGCQIALDENDELMKVSIDVKQIK 263 Query: 120 LNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + ++ R G + I N ++ NG ++ D Sbjct: 264 QVILNMIKNAMDAIESIGGEREGCINIHTVLEGNYVHICIEDNGLGM-DHNTLARLFDPF 322 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 323 FTTKESGTGLGLAVSYRIIKNHGGFIHVDSKHGSGTQFKITLP 365 >gi|283770756|ref|ZP_06343648.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus H19] gi|283460903|gb|EFC07993.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus H19] Length = 554 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDPQSLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVILK 550 >gi|282916952|ref|ZP_06324710.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus D139] gi|282319439|gb|EFB49791.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus D139] Length = 554 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDPQSLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVILK 550 >gi|46450220|gb|AAS96868.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] Length = 362 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 75/263 (28%), Gaps = 50/263 (19%) Query: 1 MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE-------------- 42 + K + + +L + + H++ +P+ AI+ E +L Sbjct: 97 LQKEFQAKFHQAEKMATVGMLAAGVAHEVNNPLTAINGFAEGILRRVKRLRGSVDPDLHA 156 Query: 43 --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 ++ R L F R V+ + + D +++ + + K Sbjct: 157 DLTDYAGTILGECRRCQEIVHSLLTFSRPHSSAFSPVNLNVVVDDTLKLLHNHLKQPKYR 216 Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLP--------------------RG 133 V + +++LNL + A +L + Sbjct: 217 HVRIDTRLCPTAPVILGCEAQLKQVMLNLLVNALDALEAVAPSAGDSGDDAPPDAHGGKT 276 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191 +T++ + F+++ G+ E + + + I + Sbjct: 277 AVITVAPFRDERHAGFTVRDTGSGI-PQEHLHSLFEPFFTTKPVGRGIGIGLSTCYTIVT 335 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 E+ + E + V + L Sbjct: 336 EHGGDISVESKEGEGSVFTVTLP 358 >gi|134299847|ref|YP_001113343.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052547|gb|ABO50518.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 515 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 15/225 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + S LVAL L + + H++ +P+G + +++++D E ++ I Sbjct: 276 QEELMRSERLVALGRLVTGVAHELRNPLGIVRATVQVMDGEYKNLEGIKDYTKVICEQID 335 Query: 63 --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKID 110 L F R + +D L + + + V + Sbjct: 336 RGNKVIQELLDFGRPSKPIVSPIDLNGLLESVLTFTYPILRQNNIQLVREFTKDLPKANI 395 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 S ++ +NL + A ++P GG +TI+ K+ +G + +I D Sbjct: 396 DSDRIKQVFVNLILNAIQAMPGGGNLTINTFAEKDTIQVQFTDSGKGISPKDLP-RIFDP 454 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + + + + + L K Sbjct: 455 FYTTKDDGAGLGLAISHQIIRMHGGAIWVSSTSPTGTTFNVCLPK 499 >gi|322391843|ref|ZP_08065308.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780] gi|321145323|gb|EFX40719.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780] Length = 449 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 70/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + + + + + Sbjct: 271 IDNATSNLDVELINFTAFITFILNRFDKIRAQDEEKKYEIVRDYPINSVWVEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GGK+T+S++ + ++ I S+ G + F + + Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSISDQGLGIPKEDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|291278445|ref|YP_003495280.1| hypothetical protein DEFDS_0012 [Deferribacter desulfuricans SSM1] gi|290753147|dbj|BAI79524.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 383 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDL------------VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE 48 MA + +L + S I HDI + + I +ELL+ + Sbjct: 143 MASQCALAIERYNLYEEEKKSEKLKLIGKFTSSIAHDIKNLLNIIQGYVELLEIELDDHP 202 Query: 49 VMQLIRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 ++ S ++ + + + L + + + ++ F + Sbjct: 203 ALKEYIDSIVTELKMIHGLTLDILDFSKKNIMLRRDEVRLSELISEIKKHADIMIKFTDI 262 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 D + + ++ +NL + +L G + I + +F + NG Sbjct: 263 DFTISYENDTSLFIDKEKIFRVFMNLINNSIEALNGKGVIKIDAKVMDEYVVFEVYDNGI 322 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + E + L Sbjct: 323 GIKKENIDKIFDPFFTSGKIKGTGLGLAVTKEIIIAHGGEISVESEEGEYTKFIIKLP 380 >gi|229138120|ref|ZP_04266718.1| hypothetical protein bcere0013_12440 [Bacillus cereus BDRD-ST26] gi|228645465|gb|EEL01699.1| hypothetical protein bcere0013_12440 [Bacillus cereus BDRD-ST26] Length = 486 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQITDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 482 >gi|168069625|ref|XP_001786518.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162661105|gb|EDQ48669.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 406 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 20/216 (9%), Positives = 60/216 (27%), Gaps = 12/216 (5%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + L A+ L + I H+I +P+ ++ ++LL E +++ Sbjct: 78 TKELLRQTDKLSAIGQLAAGIAHEIRNPLTSLRGFVQLLQASLAEPRYCEIMLAELDRIN 137 Query: 62 IRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + + + I I + + +S + Sbjct: 138 FIVSELLVLAKPQQMKFQEKIPTQIIYDVISLLESQANMNNVIFHDHLERSLPTISCDEN 197 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ V ++ + +S + S++ G ++ + Sbjct: 198 QLKQVFINVCKNAIEALPQGGDIYVESTRLAPSRIRISIRDTGKGIDPSRIP-RLGEPFY 256 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + + + + E+ L E + Sbjct: 257 TTKENGTGLGLMVSYRILEEHGGSLTIESEPEKGTT 292 >gi|282890083|ref|ZP_06298615.1| hypothetical protein pah_c012o006 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500011|gb|EFB42298.1| hypothetical protein pah_c012o006 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 431 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 14/223 (6%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60 I S M ++ + + + H+I +P+G I LL+ + +Q I + + Sbjct: 205 IAKRNSRMKVLGEMAASVAHEIRNPLGGIKGFASLLERDLSDKPELQKMAGYIVQGTDNL 264 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + L + +++ + + + ++ + + Sbjct: 265 NRLVTQVLNYSRPLQPQFASMDLVQLLEELRLHMLVDPSVKERIDINLETDLPELWIHAD 324 Query: 115 RAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + LNL + A ++P G +T+ + + I +K G E +I Sbjct: 325 MQILRSAILNLMVNAVQAMPNHGTLTLKLIQQEELAIIQVKDTGIGI-PSENLEKIFSPF 383 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + I S L Sbjct: 384 FTTRPEGNGFGLAEVYKAVEIHGGDIEVHSIVQKGTEFSLKLP 426 >gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 604 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 63/218 (28%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ + + LE L + I +++ + + I + + Sbjct: 380 FVANVSHELRTPLTTMRSYLEALADGAWRDEEIAPRFIEVTQNETERMIRLVNDLLQLSK 439 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + D ++ + R + ++ N Sbjct: 440 LDSKDYKLKKTRVHFIPYFHKVIDRFELTKKENVSFVRDFPDEKIIVYMDEDKITQVFDN 499 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P+GG +T V+ + S+K G + F + + + Sbjct: 500 IISNALKYSPQGGTITFRVKKKGDYIEVSVKDEGVGIPKSDLSKIFERFYRVDKARSRKL 559 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + + L Sbjct: 560 GGTGLGLAIAKEVVVAHGGRIWAESQERKGTTIYFTLP 597 >gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 610 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 59/232 (25%), Gaps = 28/232 (12%) Query: 10 SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAI 61 L + + H++ +P+ I + E LD+ +++ + R + I Sbjct: 369 EQEKLEQSRREFVANVSHELRTPLTTIRSYAEALDDGALDERQLADRFVSVIRNETERMI 428 Query: 62 IRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + G Sbjct: 429 RLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQKGIRTEVYIDDAVGTVW 488 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQIV 168 ++L NL A GG + +S + + S++ +G + +I Sbjct: 489 LDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISVRDSGIGIPKKDLG-RIF 547 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E + ++ L Sbjct: 548 DRFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEGTTVTFTLP 599 >gi|229166268|ref|ZP_04294027.1| hypothetical protein bcere0007_12420 [Bacillus cereus AH621] gi|228617213|gb|EEK74279.1| hypothetical protein bcere0007_12420 [Bacillus cereus AH621] Length = 465 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 299 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 359 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461 >gi|197118542|ref|YP_002138969.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087902|gb|ACH39173.1| sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 412 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 64/224 (28%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + L + + + H+I +P+ I +++ + E + Sbjct: 186 MTRKVNLA----KL-GEMGALLAHEIRNPLAGIKGFAQVIAKKPQEARNAAFAQNIVTEV 240 Query: 61 IIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKID 110 + + D + + ++ + + + + Sbjct: 241 VRLEALVNDLLAYAAGDGAQRAPFDLGELIDNTLSLLAPEAVEREVSVCCSSTCSFFVMG 300 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + LLNL A ++ GG + I+ + + S+K G + ++ + Sbjct: 301 NRDRIEQTLLNLGKNALQAMDAGGVLEIACASAGGQAQISIKDTGQGIAEADLP-KVFEP 359 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ + E ++ L Sbjct: 360 FFTTRARGTGLGLALCKKVIEEHGGTIGLESRIGEGTTVTLALP 403 >gi|229029105|ref|ZP_04185203.1| hypothetical protein bcere0028_12070 [Bacillus cereus AH1271] gi|228732203|gb|EEL83087.1| hypothetical protein bcere0028_12070 [Bacillus cereus AH1271] Length = 486 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + +I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRNILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV +++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + I+ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSIEHEGTTVHIEIP 482 >gi|108805767|ref|YP_645704.1| multi-sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108767010|gb|ABG05892.1| multi-sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 608 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 57/225 (25%), Gaps = 16/225 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + A + H++ +PI A+ LE+L++ E+ + +R Sbjct: 367 TEERQIQRAK--AEFIANASHELKTPISALSGYLEMLEDEQDEEVRAEFLREMRTQTERL 424 Query: 64 LK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 VD L ++ + + Sbjct: 425 QNLARTLLDLSRLDANAVIFRLEEVDLEDLLHELRRDFSYTGRPLRIHAEEGVPPVETDP 484 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD 169 + + L L A P G V ++++ + ++ G E F + Sbjct: 485 TQLHRTLAILVDNAIKYSPEGTPVDLTLRREDGGVVIDVRDRGCGISEAEIPHIFERFYR 544 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S D + + + + S +L Sbjct: 545 AQGSSRADGTGLGLALANEIVGHLGGEIRVQSEPGAGSTFSVVLP 589 >gi|195541892|gb|ACF98093.1| putative FixL [uncultured bacterium 1042] Length = 503 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 70/243 (28%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSM--DLVAL--------LCSRICHDIISPIGAIHNSLE----LLDEVGI-- 45 + L + +L L + S + H++ P+ AI N ++ LL ++ Sbjct: 254 RQESAARLEEIQGELARLARLNELGEMASTLAHELNQPLSAIANYVQGCSRLLRDMDDAV 313 Query: 46 ---EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVD 97 E ++ S+ A ++ +R + + + + + Sbjct: 314 ASRMREALEEAARQSLRAGQIIRHLREFVTKGATEKAPENIRKLVEEAGALALVGSRERG 373 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSL 151 R +T + +R +I L + ++ + T + E I + Sbjct: 374 IRSVFDFTPGADMVMVDRIQIQQVLTNLMRNAMEAMREGTRRDLVVRTAPHADGEVIVEV 433 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + Q+ V + + + + + + D+ Sbjct: 434 SDTGPGI-SDDVAAQLFRPFVTTKPGGMGVGLSISKRIVEAHGGEIWVDSNDNGGATFRF 492 Query: 212 LLE 214 L Sbjct: 493 TLP 495 >gi|78042954|ref|YP_361359.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995069|gb|ABB13968.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 445 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 22/231 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+ + + L + + I H++ +P+ + + ELL E ++E ++ + Sbjct: 217 MAEALE---RNEKLRRQMIADIAHELRTPLSILQGNFELLLEKVIEADEETLRSLAEEVK 273 Query: 59 SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----G 106 ++ +R + +A K + T Sbjct: 274 RLSRLVEELRELSLAEAGELKILPVEVEVNQFFSEVAAPFTSLAEAKSISFETTLPAKGE 333 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + +++ NL A GGKV + V+ + + + G + Sbjct: 334 KYSFDPDRMKQVVYNLLTNAFQYTGEGGKVKLEVKLLDGKLLIEVTDTGPGIPPEDLPYI 393 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 F + G + + L + ++ E + Sbjct: 394 FERFYRGEKSRSRTTGGSGLGLAIAKSLVEAHGGKIWVESTVGQGTTFKVV 444 >gi|258591259|emb|CBE67556.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 697 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEV----GIEDEVMQLI 53 + + + S L A+ L + + H++ P+ I ELL + + ++ I Sbjct: 451 LRETQAQLIQSGKLAAVGTLAAGVAHELNQPLMIIRGYAQELLTDERVASEEIRDDLRRI 510 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK 108 + + +R + + L + + + A D V Sbjct: 511 EAQTTRMAAIINHLRDFSRESKGRREVTDLNRLVREALAFLGQQLKAHDVVVVQELDPAL 570 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPE 162 + + ++LLNL A ++ G + S + S+ G E Sbjct: 571 PTVWVDPLQIEQVLLNLITNARDAMESTGMGAITIRTDVVSGSRVALSVTDTGPGI-PEE 629 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLE 214 T+I D + + + E+ L+ E D + +L Sbjct: 630 IRTRIFDPFFTTKEVGKGTGLGLSICHGIIEEHGGALIMESSVADGRGARFTMILP 685 >gi|302024080|ref|ZP_07249291.1| sensor histidine kinase [Streptococcus suis 05HAS68] Length = 449 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55 ++ L S + H++ +P+ ++ + LE LDE + + V + Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257 Query: 56 SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L R+ + L +Q+ + + Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQIS 317 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 I + + ++L N+ A P GG +T S++ + ++ I S+ G + Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKTDLP 377 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + ++K + + H + +L Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432 >gi|77917874|ref|YP_355689.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77543957|gb|ABA87519.1| GAF sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 556 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 24/233 (10%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L A+ + + + H++ SP+ I + +L+ ++++ Sbjct: 314 EARLMHSARLAAIGEMAAGVAHELNSPMTVIIGTAQLIHREFEAQPEVREPLEDIVNCGL 373 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 L F R D + + +I I ++ V + Sbjct: 374 RCKRIIQNLLTFSRQDHLPMAETDLNEEVERVLHLIYYQIDRNQITIVKNLDPNLPLTKA 433 Query: 111 LSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 R+ ++L NL + A +L + I S+K NG Sbjct: 434 NGRQIQQVLTNLLINARDALGGVDREKTIEVRSYAEDNGDGQWIIISVKDNGIGIPAKNL 493 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ S + + + +A + L E + L Sbjct: 494 -QRVFTPFYTSKEETKGTGLGLSVSLGIAEAHGGSLEVESTWGEGSCFTLRLP 545 >gi|328952433|ref|YP_004369767.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452757|gb|AEB08586.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 565 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 65/239 (27%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIE--------D 47 A + L S + AL + + I H+I +P+ I L +LL E + Sbjct: 314 AASDALLLQSSKMAALGKMAAGIAHEINNPLAVIAEKAGWLKDLLREQDFDRTSDLEEFQ 373 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQV 102 + + I A + + + + + + + + ++ Sbjct: 374 DTVDKIEYHVARAKKITHRLLDFARRHEPLRENVDVNRVLEESIGFLENEAHFRNIQIHR 433 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNL 157 + + ++ + ++ +T + + ++ +G Sbjct: 434 ELDPHLPLVVSDTGQLQQVFLNIFDNAIDAVGKGGEITLTSRYLEKDGKVSITIADSGPG 493 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + + + + + +L Sbjct: 494 I-PEEILKKIFDPFFTTKEVGKGTGLGLSITYSIIKKLGGEITVANKPGQGALFTIILP 551 >gi|289168018|ref|YP_003446287.1| histidine kinase [Streptococcus mitis B6] gi|288907585|emb|CBJ22422.1| histidine kinase [Streptococcus mitis B6] Length = 449 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 70/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +Q+ + + + + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T++++ + ++ I S+ G + +I D Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|228994184|ref|ZP_04154084.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM 12442] gi|228765636|gb|EEM14290.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM 12442] Length = 611 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 384 FVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 443 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K V + + + + ++L N Sbjct: 444 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFSKKSRFIDMDADKITQVLYN 503 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D ++ S+ G E +I + Sbjct: 504 IISNALKYSPEGGTVTYRLRDREDMLEISVSDQGMGI-PKENVEKIFERFYRVDKARSRQ 562 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + +L Sbjct: 563 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFVLP 601 >gi|149914562|ref|ZP_01903092.1| molybdenum cofactor biosynthesis protein A [Roseobacter sp. AzwK-3b] gi|149811355|gb|EDM71190.1| molybdenum cofactor biosynthesis protein A [Roseobacter sp. AzwK-3b] Length = 675 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + + + S L A+ + + + H+I +PI I +L++ + +LI Sbjct: 441 LERTTERLIMSEKLAAVGEITASVAHEINNPIAVIQGNLDVARSVLDRDADKVQTEFRLI 500 Query: 54 RLSSMSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + VD + + + + +D + S Sbjct: 501 DDQVYRISVIVSKLLQFAKPEEYSGAANVISPVDVVRDCLVLTRHQTEVADIDVVTEFSS 560 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + I E ++++NL + A ++ G++++ V D + + + G Sbjct: 561 ENKVIMSRTELQQVVVNLILNAVHAMGAKGRLSLGVHDEEGGVVIRVDDTGQGIDAAVLK 620 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ L Sbjct: 621 RIFDPFFTTKQAEGTGLGLSISQTLVTRAGGQITVTSTPGTGSRFRVWLP 670 >gi|330832446|ref|YP_004401271.1| sensor histidine kinase [Streptococcus suis ST3] gi|329306669|gb|AEB81085.1| sensor histidine kinase [Streptococcus suis ST3] Length = 449 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55 ++ L S + H++ +P+ ++ + LE LDE + + V + Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257 Query: 56 SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L R+ + L +Q+ + + Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQIS 317 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 I + + ++L N+ A P GG +T S++ + ++ I S+ G + Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKTDLP 377 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + ++K + + H + +L Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432 >gi|148654412|ref|YP_001274617.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148566522|gb|ABQ88667.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 844 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + + S L A+ L + + H++ +P+ A+ +L EV + L Sbjct: 467 LRIAQQRLIQSERLTAVGELVAGVAHELNNPLTAVLGFAGILQEVAPAEYQHDLTMIVES 526 Query: 55 --LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110 + L F R + VD + + ++ + ++ Sbjct: 527 ATRARRIVQNLLTFARQREAHLEEVDLNLAARQVLSLLAYQMRTHNITVEERLQPQLPLT 586 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISV-------QDSKNENIFSLKINGNLARFP 161 + +++LNL A +L V ++++ + + G P Sbjct: 587 VADATAIKQVMLNLLNNAQQALASWSGRRTIVVTTRLELRENRQWLVLEIADTGPGI-AP 645 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + + + + + L Sbjct: 646 EHLPRIFEPFFTTKPVGEGTGLGLSICYGIVRQYHGNIRVQSAPGKGACFTVELP 700 >gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 987 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 61/245 (24%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEV------GIED 47 K + L A + + H++ +P+ +I ELL+ Sbjct: 463 RKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSIIGYAELLNRALTPIANDEVM 522 Query: 48 EVMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 ++ I+++ + + + V + + ++ I + Sbjct: 523 HDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLDKLVQAVVDTVQPVIVRNTN 582 Query: 100 V----QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + G + +ILLNL A G + F++ G Sbjct: 583 QLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFTTNGQITLRISGTPE-MVYFAVHDTG 641 Query: 156 NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + D + + LA + E + Sbjct: 642 IGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLARLLGGDITLESALGEGSTFT 701 Query: 211 ALLEK 215 L + Sbjct: 702 LSLPR 706 >gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 919 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 62/229 (27%), Gaps = 18/229 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + L + + H+I +P+ AI LL + +E + I++ + Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDLEERREYIKIVQENND 751 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + G D + DI + + + + + Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSECS 811 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + F ++ G + Sbjct: 812 VVSDRNRLHQVISNFVNNALKFTSSGSIRVGYEEK-EECVEFYVRDTGIGIPAGQLPHIF 870 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + + + + + K Sbjct: 871 ERFVKLNTFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIPK 919 >gi|160934993|ref|ZP_02082379.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753] gi|156866446|gb|EDO59818.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753] Length = 581 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 22/224 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L + + + H++ +P+ +I +ELL + ++ + + + M Sbjct: 355 QQLRSEFVANVTHELKTPLTSIRGFIELLKSGDRDEETRQYFYDVLDIEAERLHHLIDDM 414 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSWTGEKIDLSRERA 116 + + D + + + + R++ Sbjct: 415 LVLSQIENAKDDVQTVPCNLNQEIETVLRRAKPIAEKNGIVLRLEAEEAFLVASSPTRLQ 474 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 ++ NL A G+VT+++Q +N + +K G E ++ + Sbjct: 475 QLFGNLVENAIKYNKPQGRVTVTLQRQRNMVLVKVKDTGIGI-PQEHLPRLFERFYRVDS 533 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V LA + E + V + L Sbjct: 534 SRSREIGGTGLGLSIVKHLAGLYHGDVSVESVVGEGSVFTVRLP 577 >gi|303248425|ref|ZP_07334685.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490223|gb|EFL50141.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 314 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 72/238 (30%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------------EVGIE 46 + + L S L ++ L S I H+I +P+ I L+L ++ Sbjct: 77 LREMNLSLLQSQKLASIGELSSGIAHEINNPLAIITQELDLARELLAGGPCLAETDLDDA 136 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQ 101 + ++ I + V L + + + + D + Sbjct: 137 RDSLREIASQVDRCRQITHKLLNFARKMDPVLQEEALDRVIEDMAILVEREARGRDVAIV 196 Query: 102 VSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + + +++LNL A + P+GG +T+S + + +++ G+ Sbjct: 197 RDYASDLPPVRTDVPLLRQVILNLLTNALHATPKGGAITLSTRRKGKWAVIAVRDTGSGI 256 Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P +I D + + + L + L Sbjct: 257 -SPANMEKIFDPFFTTKQPGQGTGLGLSLSHGIVARLGGTLAAVSPPGEGATFTVTLP 313 >gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 691 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 24/233 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK ++ + + L S I H+I +P+ + E+L+E +++ +L L S Sbjct: 440 AKERAEEIARLK--STLLSNISHEIRTPLAGVIGFAEVLEEE-LDEPHRELAALIRDSGR 496 Query: 62 IRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L+ + + + + + +++I+D + Sbjct: 497 RLLETLNTLLDLARIEAGAFVLTPEPFDAADEVRQSVRIFQRMIDDKGLRLELDLPDAPL 556 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165 +I++NL A G + + + + ++ G Sbjct: 557 PVYLDRNGFHRIVVNLVSNAVKFTDE-GMIRVGLAAEGDWLRLQVQDTGVGIDPAFMPHL 615 Query: 166 ----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + T + L R+ + + L Sbjct: 616 FEEFRQENNGLARTHPGSGLGLAITHRLVEMMGGRIEVQSEKGKGTTFTVWLP 668 >gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] Length = 612 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 KN S + H++ +P+ ++ +E L++ ++ + + +I+ Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420 Query: 57 SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + I + + L + + +R+ Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ N+ A P GG +TI + + I S+ G Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 540 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + ++ + + + + Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335] gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners AB-1] gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335] gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] Length = 612 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 KN S + H++ +P+ ++ +E L++ ++ + + +I+ Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420 Query: 57 SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + I + + L + + +R+ Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ N+ A P GG +TI + + I S+ G Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 540 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + ++ + + + + Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|253577430|ref|ZP_04854746.1| ATP-binding region ATPase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843230|gb|EES71262.1| ATP-binding region ATPase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 538 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 18/233 (7%), Positives = 55/233 (23%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55 + ++ + + + + H++ +P+ +IH LE+L + + Sbjct: 304 LEESFEAEREAKEQMRRFVADASHELRTPLTSIHGFLEVLLRGAANRPEQLHTALNSMLG 363 Query: 56 SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + ++ + T + + + + Sbjct: 364 EAQRMKKLVEDLLTLAKLDRTPVVQRTQVRLDKVIAEMEPHLRMLAGEREVLFDLQPGLT 423 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---RFPEK 163 + + +++LNLF A + ++ NG P Sbjct: 424 AMCDRDKIKQVVLNLFHNAVQHTDPQQGTIAVRLSAHPRQAELDVRDNGPGIAPEHLPHV 483 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + L Sbjct: 484 FERFYRIDASRTRKQGGAGLGLSISQAIVEAHGGTIEVHSEPGQGATFRVTLP 536 >gi|157363850|ref|YP_001470617.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga lettingae TMO] gi|157314454|gb|ABV33553.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga lettingae TMO] Length = 421 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 32/240 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M K N ++ S + H++ +P+ +IH E L + D +++I Sbjct: 178 MTKEYELN----EMRREFVSNVSHELRTPLTSIHGYAETLLNDPDMDAETRDRFLKIIEN 233 Query: 56 SSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S + + A +D + + + E D V+V + E Sbjct: 234 ESARMSRLINDLLDLERLESGEARFDFQKIDLCSVVKYVVSITEPLSI-DYDVKVEYDCE 292 Query: 108 KIDLSRERAKILLNLFM---VAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 ++ + ++ +++ L A KV+ISV+ ++ + + G Sbjct: 293 EVTIDGDQDRLIQMLLNLADNAVKYTSLKESGEKKVSISVKKEGSQAVIRVSDTGPGM-P 351 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + V + + ++ E + L Sbjct: 352 RDALNRIFDRFYRVDKGRSRKMGGSGLGLSIVKTIVDRHNGQIFVESEPGAGTSFTVKLP 411 >gi|197117483|ref|YP_002137910.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197086843|gb|ACH38114.1| sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 364 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L AL L + + H+I +P+ +I + E+L E G + + + + Sbjct: 139 EEQLRRAERLSALGELSAILAHEIRNPLASIRGTAEILREDGAAANRDEFLGILVKESDR 198 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKID----LS 112 + S ++ DI + + A + V++ +T ++ Sbjct: 199 LNHVVEDFLRMARSEPAIKKECDINYELANMVTLLSAQARGEEVELRFTPGEVPTLSADP 258 Query: 113 RERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + +N+ + + GG+V T S NG E +I + Sbjct: 259 EKLRQAFMNVILNGIQASAPGGRVLVTTSYDRQSRSIEIRFSDNGPGI-AREAIGKIFEP 317 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L E A L Sbjct: 318 FFTTKGSGTGLGLSITKKILEGHGGTLEVESTPGEGACFRARLP 361 >gi|91203170|emb|CAJ72809.1| similar to two component histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 815 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 73/253 (28%), Gaps = 40/253 (15%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----------LLDE----- 42 + + L S + +L L + I H+I +P+G I ++LE +L+E Sbjct: 561 LERTQMQLLQSEKMASLGQLAAGIAHEINNPVGYISSNLEWMHNKFAVIKAMLEELKIES 620 Query: 43 -----------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD 85 +E M+ R F + D + Sbjct: 621 KPQSHPWDNRKNIASHMEKSINESMEGTRRIQSIVNSLRIFSHRSEDKPEPADINAEIES 680 Query: 86 IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDS 143 +I + I + S+ R ++ +N+ + A +L G++ I+ Sbjct: 681 ALNIIRNEIKYKATLIKSYGDIPPIPCNRRQLGQVFMNIILNAAQALKEMGEIRIATYRK 740 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEI 201 + NG + +I + + + + + + + Sbjct: 741 DYFIFIVISDNGPGIPEQDLP-KIFEPFFTTKEPGMGTGLGLSIAYNIIASHNGTIEVDS 799 Query: 202 IDDHNVVLSALLE 214 + + L Sbjct: 800 KVNTGTTFTIKLP 812 >gi|294814188|ref|ZP_06772831.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] gi|326442586|ref|ZP_08217320.1| histidine kinase [Streptomyces clavuligerus ATCC 27064] gi|294326787|gb|EFG08430.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] Length = 549 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 57/215 (26%), Gaps = 19/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70 L I H++ +P+ + +E L + E++ + M + ++ Sbjct: 322 LTGDIAHELRTPLANLRGYVEALQDGYVEPTPELLDSLHEEVMLQQRIVDDLQDLALAEA 381 Query: 71 ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLF 123 + VD L + +++ NL Sbjct: 382 GALTYHRVDVDLRELLETCRTAHHARAEAATVTLTTAPPATPVLVHADPDRLRQVVGNLL 441 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST--IDS 178 A + P GG VT+++ I + G P F + + Sbjct: 442 TNAIRATPPGGTVTLALVPHGELAIIHVHDTGTGISEDALPHLFDRFWRADAARGRQTGG 501 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + ++ + E + L Sbjct: 502 SGLGLAIVRQIVRDHGGTVGVESTVGVGTTFTVTL 536 >gi|262274565|ref|ZP_06052376.1| sensory box histidine kinase/response regulator [Grimontia hollisae CIP 101886] gi|262221128|gb|EEY72442.1| sensory box histidine kinase/response regulator [Grimontia hollisae CIP 101886] Length = 834 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 55/240 (22%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + I H+I +P+ I + L+ + + + + + + S+ Sbjct: 442 LVDARERAIKAARAKQLFLANISHEIRTPMNGILGAASLMQDEPMSARQAEYLSVIAHSS 501 Query: 61 IIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + D + ++ I ++ + E Sbjct: 502 RGLMALINDLLDFSKMESNHLKLEEAPFDLEKLGKYVHDLMLPTINNKPQLAFEFRYEDT 561 Query: 110 DLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLAR 159 +++LNL A G + + G Sbjct: 562 CPRYFLGDAHRIEQVMLNLVSNALKFTETGVVSFSISMRKEQGGYTGVCLRVSDTGVGIA 621 Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + L + E V + L Sbjct: 622 PEKHNMIFDEFQQADTSTTRQFGGSGLGLAITKQLVDLMGGTISVESELGRGSVFNVFLP 681 >gi|158520443|ref|YP_001528313.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfococcus oleovorans Hxd3] gi|158509269|gb|ABW66236.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfococcus oleovorans Hxd3] Length = 598 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59 L A+ L + + H+I +P+ +I ++ + +++ + S Sbjct: 371 RKEKLAAIGELAAGVAHEIRNPLSSIKGIASYYKSKFEDGSEDKEMAGVMIEEVDRLSRV 430 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L+F R D L ++ ++ A +Q++ T E I+ + ++ Sbjct: 431 ISELLEFARPTKLNRKLSDMNELLKHSTRLVEQEAAAKKVDIQLNLTSESIEADVDPDRL 490 Query: 119 LLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + +L S + +K NG+ + +I D + Sbjct: 491 TQCFLNLFLNALQAMESGGRLTVSSSTGANGNVAIDIKDNGSGISAEDLS-KIFDPYFTT 549 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ ++ V S L Sbjct: 550 KPKGTGLGLAIVHKIIEAHQGQIKVRSTIGQGTVFSIALP 589 >gi|224368321|ref|YP_002602484.1| AtoS1 [Desulfobacterium autotrophicum HRM2] gi|223691037|gb|ACN14320.1| AtoS1 [Desulfobacterium autotrophicum HRM2] Length = 506 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53 M K + + L AL L + + H+I +P+G I +L+ + E + +++I Sbjct: 268 MEKQMA---QAEKLAALGELSAGVAHEINNPLGIILGYTQLMLKNEPEGKSNNHDDLKII 324 Query: 54 RLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108 + L F R + G V+ + D+ + + + Sbjct: 325 EKHVHACRTVVSDLLTFSRKSSTDNGQVNINKVIDDVVKFLGNHPDLRMVDILLDHDPSN 384 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEK 163 + + L + + + + + ++KN+ + S+ NG E Sbjct: 385 QLMVTGNEQELRQVMINLLINAGHAVEKRGVITITARANTKNQVLISVSDNGCGIDKKEL 444 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + + + + + V + +L + Sbjct: 445 SD-IFNPFFTTKPVGEGTGLGLSVSYGIISNHGGDITVKSTPGTGTVFTVILPR 497 >gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 482 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 63/232 (27%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 +I + + S + H++ +P+ A+ E L + + +Q I + Sbjct: 250 DITERKEMERMKDEMISAVSHEMHTPLTAMIGFTEFLLENEVDREQQKNCLQTIHKETER 309 Query: 60 A----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 M SV L+ Sbjct: 310 LSELINNFLQLQRLKASMVKFRIMPVSVGLLLADAAALYTAASRKHTIVVECPPDLPPVR 369 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ NL A P GG VT+ + + +F +K NG PE ++ + Sbjct: 370 GNEEQLYQVAGNLISNAIKYSPAGGTVTLGGRADDDMVVFWVKDNGVGI-SPEFQERVFE 428 Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + R+ E D L + Sbjct: 429 RFFRVDNSDRRKVGGAGLGLTLVREIVAAHGGRVWVESTPDAGSTFFVSLPR 480 >gi|320120642|gb|EFE27962.2| sensory box histidine kinase YycG [Filifactor alocis ATCC 35896] Length = 602 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 57/219 (26%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +PI I E L + I + M++I S ++ + Sbjct: 378 FVANVSHELKTPITTIRTYSETLLDGALKDPAIAKKFMEVIVKESDRMTSLIRDLLQLSH 437 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------------KIDLSRERAKILL 120 ++ + + + + ++++ Sbjct: 438 IDFKKETWNFDYTDINTLIQDSIDKMELYYQTKHQTLVSNLLGQSRQIWVDKTKMEQVII 497 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A GK+++S+ S+ ++ NG + Sbjct: 498 NILSNAIKYTEENGKISLSLFVSEGILDIVIEDNGIGIPKEDVEHIFDRFYRVDKGRSRQ 557 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ + V + L Sbjct: 558 QGGTGLGLSIAKHIVEEHGGSISVRSDFGKGTVFTISLP 596 >gi|296133450|ref|YP_003640697.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermincola sp. JR] gi|296032028|gb|ADG82796.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermincola potens JR] Length = 354 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 69/230 (30%), Gaps = 18/230 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 K + + + A+ L + I H++ +P+ ++ L+L + + +++++ Sbjct: 124 QKQLEEQMYQTEKFSAIGELAAGIAHEVRNPLTSVQGFLQLFAQNTGPEDPKKAYLEIMQ 183 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 A +K L + + ++ + + Sbjct: 184 KEIDRANAIVKQFLLLAKPVLPIKKGTAMDKLIEEVVCLLQVEAGRYGVEIQTNYAKGLP 243 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++LLN+ ++P GG + + +N+ + G Sbjct: 244 LVAIDREQIKQVLLNICKNGIYAMPNGGLLSIETEYEAVQNKVHVIISDTGQGIDPFTL- 302 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + D + + ++ ++ +L Sbjct: 303 EKIFDPFFTTRADGTGLGLTVSYKIVQNHEGKIEVRSEVGKGTTFRVILP 352 >gi|148265437|ref|YP_001232143.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398937|gb|ABQ27570.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 406 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 M + L ++V L L + + H+I +P+G I +L++E Sbjct: 176 MRREEIHRLEMHHREEMVRLGELGALLAHEIRNPLGGIKGFAQLVEESDDAQRSAGFASK 235 Query: 56 SSMSAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 A + A + + + + +D ++ ++ Sbjct: 236 IVAQASRLEDLVNDLLAFAREEKDAHLPLDLAPLVEESVALVRHEAEQQHIDVKLSIAHG 295 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++LLNL A ++P GG++ ++ +N I ++ NG + Sbjct: 296 IVVPIAAERIEQLLLNLCKNAVQAMPDGGELRAELRRERNMAIITIADNGIGIQPTYL-D 354 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + S + + +A E+ + + + V + L Sbjct: 355 HIFEPFWTSKVRGTGLGLALCRRIAEEHGGAVRVKSAVNQGSVFTVELP 403 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 75/233 (32%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56 +++ + S + H++ +P+ +I+ SL +L + ++Q+ S Sbjct: 706 RDVTERKQIERMKDEFVSVVSHELRTPLTSIYGSLGMLASGLLPTDSEQGKRLLQIAADS 765 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106 + + + + +G + +I +I + V + + + +G Sbjct: 766 TERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQPLADKAGVTLSISALSG 825 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + + + L NL A G V + Q +E + ++K G + Sbjct: 826 QVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGAQQEGDEVLLTIKDTGRGIPTDKLESI 885 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + D + + ++ R+ E I L Sbjct: 886 FERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIWAESILGEGSTFYVTLP 938 >gi|229011902|ref|ZP_04169082.1| hypothetical protein bmyco0001_23480 [Bacillus mycoides DSM 2048] gi|228749316|gb|EEL99161.1| hypothetical protein bmyco0001_23480 [Bacillus mycoides DSM 2048] Length = 614 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 367 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 426 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110 +F+ +A + + + V+ + Sbjct: 427 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 486 Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++ GG + KN + S+ G E+ ++ + Sbjct: 487 SENQLKQVFINILQNSIEAMLNGGGISIHIKEIHKNGVVISVIDEGIGI-PEERIKRLGE 545 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 546 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTMYLPK 591 >gi|162451352|ref|YP_001613719.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161161934|emb|CAN93239.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 636 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54 + ++ + + HD+ +P+ AI LL + + ++ I Sbjct: 399 KRARAEAQEAVRQREQMLGIVAHDLRNPLSAIMLRAALLKRELASRVDEEKWRDGVRTIE 458 Query: 55 LSSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ + + + + D + + ++ ++ V+V Sbjct: 459 RAARHSNRLIADLLDVASIDAHRLSILPAPHEVSDLVADATETVRLGATGRSLSVHVEVP 518 Query: 104 WTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ R+R ++L NL AH P GG + + + E ++ +G E Sbjct: 519 TDLPRVLADRDRVVQVLSNLLGNAHKFTPDGGTIGVRAEALDGEVGIHVRDSGVGI-AAE 577 Query: 163 KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I D + + + R+ E S L Sbjct: 578 HLSRIFDPYWTRPNNRQRGTGLGLAIARGIVQAHGGRIWVESRVGDGSTFSFTLP 632 >gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 962 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 61/230 (26%), Gaps = 21/230 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 + + M + S + H++ +P+ ++ ELL + + + I + Sbjct: 579 TKEYEIDQMK--SEFVSTVSHELRTPLASVLGFAELLLTKKLKPERQQRYIATIYQEATR 636 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + + I RVQ ++DL E+ Sbjct: 637 LTALINDFLDLQRMESGRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTVVS 696 Query: 116 ------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ LNL A P GG V + + N + ++ G Sbjct: 697 GDQAKLHQVFLNLISNAVKYSPHGGHVRVGCRQDGNRLLVEVQDEGLGIPSEAIPHLFTK 756 Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + H + + + L Sbjct: 757 FYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVSVISESGKGSTFTVTLP 806 >gi|148264971|ref|YP_001231677.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398471|gb|ABQ27104.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 394 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 65/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + S L L L + + H+I +P+ +I ++L+ + E ++ + Sbjct: 166 LQRAQAEIVQSEKLATLGYLSAGMAHEIRNPLNSISLFVQLIKSGMEDLEKLEYVEKILK 225 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L IE +R S Sbjct: 226 EIDRIDGILRKLLDASKRPKFEIMDVMIDRVIDSTLEIFSPQIELHKIKVERDYRSIPPA 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I NLF+ + +P G + + + + + G PE + Sbjct: 286 IKADPSELEQIFTNLFLNSINEMPLAGTLKVQLNYDAKYIVVRVSDTGKGI-PPENIPYV 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V+ + K ++ E D L Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKNYKGKIEVEKSDASGTTFCIKLP 391 >gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 714 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 63/232 (27%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 + + + L S + H++ +P+ +I +ELL ++++ + Sbjct: 476 RTEEQKMDHVK--DELISTVSHELRTPLSSILGFMELLRYRQPTPEKTTRYVEIVHEEAK 533 Query: 59 SAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L S+ L+ V Sbjct: 534 RLTNLLNDFLDIQRMEGGKQDYAFKPFSLRQLLEETIETFGETAETHTIHAVTDDDPILI 593 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++++NL A P + + ++ + ++ I S+ G F ++ Sbjct: 594 FADEDKVKQVIINLLSNAIKYSPAADHIDVRLEKTADQAILSVTDYGIGIPPT-AFDKLF 652 Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E + + +LE Sbjct: 653 TKFYRVDNSAVRKIGGTGLGLAICKEIIESHGGAISVESELNQGSTFTIVLE 704 >gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 614 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 L + ++ + H++ +P+ +I S++LL + E +++ + + Sbjct: 382 TRLRELDRLKSEFVMTA--SHELRTPLTSIGMSIDLLKDKAGSKLSDRERQLLTVAQEDV 439 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + + +I + A Q G ++ S + Sbjct: 440 QRLKALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFSCDEGL 499 Query: 115 ---------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 +L+NL A P G V ++ + + S+ +G Sbjct: 500 PEVRVDPNKITWVLVNLVGNALRHTPENGHVRVAAKQAGRFAHVSVSDDGEGIPLEFQTK 559 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V T + + + + E + + Sbjct: 560 IFDKFVQVKSRRTSSGTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVP 611 >gi|86158330|ref|YP_465115.1| signal transduction histidine kinase NtrB [Anaeromyxobacter dehalogenans 2CP-C] gi|85774841|gb|ABC81678.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-C] Length = 747 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 17/230 (7%), Positives = 57/230 (24%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L AL + + + H+I +P+ AI +++ LD + ++ + + + Sbjct: 474 ERDRLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVNRLNGVV 533 Query: 68 RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Y+ + L ++++ + R+ + + + ++ Sbjct: 534 SQFLDYSRPLKPSLAPTQVNEVLEKTFKLLQAEVPEAVRLDLDLAEWLPRVQADAEQLKQ 593 Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164 +A + + + + G + Sbjct: 594 VFLNLALNAFQAMPRGGRLTVSTRLARDELAFWREGARRADLVEIRFRDTGPGI-PDDAR 652 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + ++ L Sbjct: 653 ESIFVPFYTTKEKGTGLGLAICQRIVKAQQGTIVVRSAAGEGAEFLISLP 702 >gi|322417861|ref|YP_004197084.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124248|gb|ADW11808.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 493 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMS 59 + L ++ + + I H+I +P+ I ++ +L + ++ V++ I + Sbjct: 252 RADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRALIIGEVLEQISRLDKT 311 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDLSRER 115 L F + D L I K ++ Sbjct: 312 VNDLLFFGKPTVAEPACTDINSALKKILIFASQHRGGKNIEKKLELAEDLPPVYVDPKQI 371 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGN 171 ++ LNLF+ A ++ GG +T++ ++ + + G P+ +I Sbjct: 372 QQVFLNLFLNAVQAMQSGGTLTVTSCLAEIDGMDMVQVRVTDTGQGI-PPQILEKIFTPF 430 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ RL D + L Sbjct: 431 FTTKAQGTGLGLAISHRLIEQHGGRLSCVSQDGVGTTFTVELP 473 >gi|56420149|ref|YP_147467.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56379991|dbj|BAD75899.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 430 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 +A+ + M +V+ + + I H+I +P+ + ++LL E+ +++ Sbjct: 193 LARAELMKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEE 252 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111 A ++ I + + V S + Sbjct: 253 LERAEAIIRDYLTFAKPAPKETEPIDVATQLQKVLQMITPMAHMHSIHVSSSLEHGVVIG 312 Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + + NL + ++P GG + ++ ++ + ++ NG E+ + + Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNGVGM-TKEQVRRFGEP 371 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E L+ L Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWTIESAVQKGTTLTITLP 415 >gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] Length = 612 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 KN S + H++ +P+ ++ +E L++ ++ + + +I+ Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420 Query: 57 SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + I + + L + + +R+ Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ N+ A P GG +TI + + I S+ G Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 540 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + ++ + + + + Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|310640943|ref|YP_003945701.1| sensor protein [Paenibacillus polymyxa SC2] gi|309245893|gb|ADO55460.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 367 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 66/223 (29%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64 + L L + + I H+I +P+ AI ++LL DE ++I A + Sbjct: 144 QNDKLAMLGRISASIAHEIRNPLTAIRGFIQLLRPHLVELGRDEYARIILTEIDRANDII 203 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119 + + + + + + + + ++ + E + +S + +I Sbjct: 204 YEFLNSSKPSAPQKTAVSVMGLLKEVVMLTESEALMKGCQIALDENDELMKVSIDVKQIK 263 Query: 120 LNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + ++ R G + I + ++ NG ++ D Sbjct: 264 QVILNMIKNAMDAIESIGGEREGCIDIHTVLEGSYVHICIEDNGLGM-DHNTLARLFDPF 322 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 323 FTTKESGTGLGLAVSYRIIKNHGGFIHVDSKHGSGTQFKITLP 365 >gi|242373982|ref|ZP_04819556.1| histidine kinase [Staphylococcus epidermidis M23864:W1] gi|242348336|gb|EES39938.1| histidine kinase [Staphylococcus epidermidis M23864:W1] Length = 565 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ + + +I S Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLEMFLNIILKESNRIE 395 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + D Q ++ + ++ Sbjct: 396 SLVMDLLDLSHIEQQNEIETSYMNLSELAYNTIDNLQTQATNKNIEIKSEIEKDVIIEAH 455 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168 + A+++ NL A KV + V + ++ G F + Sbjct: 456 ENKVAQVITNLLSNAINYSLEDSKVIVRVYREGKKVNLEIQDFGIGISAKDQKHIFERFY 515 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRISVSSKPGEGSTFKVT 561 >gi|229015977|ref|ZP_04172938.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273] gi|229022194|ref|ZP_04178744.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272] gi|228739125|gb|EEL89571.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272] gi|228745337|gb|EEL95378.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273] Length = 463 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 55/219 (25%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR----------- 63 + + + H++ +P+ + ++ L E ++ ++ + + + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + V + + ++++ Sbjct: 296 QMEKHNFFIHVQEVHLHPFLTRITEKVNAMYKERHVTVSFTCPPSLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + ++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEDKHISIKIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454 >gi|65318704|ref|ZP_00391663.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165870296|ref|ZP_02214951.1| sensor histidine kinase KinD [Bacillus anthracis str. A0488] gi|167639389|ref|ZP_02397661.1| sensor histidine kinase KinD [Bacillus anthracis str. A0193] gi|170686664|ref|ZP_02877884.1| sensor histidine kinase KinD [Bacillus anthracis str. A0465] gi|170706220|ref|ZP_02896681.1| sensor histidine kinase KinD [Bacillus anthracis str. A0389] gi|177651466|ref|ZP_02934255.1| sensor histidine kinase KinD [Bacillus anthracis str. A0174] gi|190568131|ref|ZP_03021041.1| sensor histidine kinase KinD [Bacillus anthracis Tsiankovskii-I] gi|227815819|ref|YP_002815828.1| sensor histidine kinase KinD [Bacillus anthracis str. CDC 684] gi|229604753|ref|YP_002865847.1| sensor histidine kinase KinD [Bacillus anthracis str. A0248] gi|164713791|gb|EDR19313.1| sensor histidine kinase KinD [Bacillus anthracis str. A0488] gi|167512828|gb|EDR88202.1| sensor histidine kinase KinD [Bacillus anthracis str. A0193] gi|170128754|gb|EDS97620.1| sensor histidine kinase KinD [Bacillus anthracis str. A0389] gi|170669187|gb|EDT19930.1| sensor histidine kinase KinD [Bacillus anthracis str. A0465] gi|172082744|gb|EDT67807.1| sensor histidine kinase KinD [Bacillus anthracis str. A0174] gi|190560865|gb|EDV14840.1| sensor histidine kinase KinD [Bacillus anthracis Tsiankovskii-I] gi|227002499|gb|ACP12242.1| sensor histidine kinase KinD [Bacillus anthracis str. CDC 684] gi|229269161|gb|ACQ50798.1| sensor histidine kinase KinD [Bacillus anthracis str. A0248] Length = 480 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 255 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 314 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 315 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 374 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 375 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 433 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + A + Sbjct: 434 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 476 >gi|309789570|ref|ZP_07684151.1| histidine kinase [Oscillochloris trichoides DG6] gi|308228306|gb|EFO81953.1| histidine kinase [Oscillochloris trichoides DG6] Length = 463 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--RLSSM 58 M+ ++ + L + + I HD+ +P+ + LE L + ++ + Sbjct: 224 MSADLARAIQ---LRHQMTADIAHDLRTPLTVLSGYLESLRDQILKPTPERFATLYAEVQ 280 Query: 59 SAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + E S Sbjct: 281 ILQRLVDDLHTLSLADAGELTLQRHPCPPAQILAHVAETYRHAAEQAGITISDTVASNLP 340 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 E + + L NL A P GG++ + + + + + NG Sbjct: 341 EVVVDDERLCRALGNLVSNAIRHTPAGGQIELRAEQDGDHLLLQVCDNGEGIPTEHLPNI 400 Query: 164 FTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ + + V + + L E L Sbjct: 401 FERLYRADQARQQAGGSGLGLAIVRSIIEAHGGTLGVESAPGAGSRFWVRLP 452 >gi|322419734|ref|YP_004198957.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320126121|gb|ADW13681.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 555 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54 K + S +VAL + + + H++ SP+ I + ++L ++E Sbjct: 312 KMEAQLVQSAKMVALGVMAAGVAHELNSPMTVIIGTAQMLARDMRDEEDSDRNEALSDII 371 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R +VD + +I+ I + ++ Sbjct: 372 NCGLRCKRIIQNLLTFSRQDQAPFSAVDLNAEAERVLDMIQYQINRSQIAIFEHFDRELP 431 Query: 111 LS----RERAKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENIFSLKINGNLA 158 + ++L N + A +L + + + + S+ NG Sbjct: 432 RISANGPQIQQVLTNFLINARDALTEMDGKEKVIEVSTSMRSEGGRRWAVLSVTDNGIGI 491 Query: 159 RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I S + + +A + R+ E S +L Sbjct: 492 -APENVSKIFTPFYTSKEATKGTGLGLSVSLGIAESHHGRIEVESTLGQGSCFSLVLP 548 >gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] Length = 412 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 26/228 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67 ++ + + H++ +P+ +IH E L E +E+ +++I S + + Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTRLINDL 243 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117 VD + + ++I+ + + + Sbjct: 244 LDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVKGNKERLIQ 303 Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 +LLNL A KV + D+ + + +K G E ++I + Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVKDTGPGI-PKESQSRIFEKFYR 362 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ ++ E + V+ L K Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPK 410 >gi|167634328|ref|ZP_02392649.1| sensor histidine kinase KinD [Bacillus anthracis str. A0442] gi|167530216|gb|EDR92942.1| sensor histidine kinase KinD [Bacillus anthracis str. A0442] Length = 480 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 255 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 314 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 315 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 374 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 375 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 433 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + A + Sbjct: 434 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 476 >gi|153004814|ref|YP_001379139.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp. Fw109-5] gi|152028387|gb|ABS26155.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. Fw109-5] Length = 752 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 61/231 (26%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L AL + + + H+I +P+ AI +++ LD + + + + + + Sbjct: 476 ERDRLAALGEMSAGLAHEIRNPLAAIKGAVQFLDPSKLPGDDREFLEIVIEEVNRLNGVV 535 Query: 68 RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Y+ + D L ++++ + V+++ ++ + ++ Sbjct: 536 TQFLDYSRPLKPALAPTDVNDVLERTFRLLQAEVPQSISVELALAEWLPRVNADAEQLKQ 595 Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164 +A + + + +G E Sbjct: 596 VFLNLALNAFQAMPAGGRLVVSTRLTRDELAFWREGSRKADLVEVRFRDSGPGV-PEEAR 654 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 +I + + L ++ + L Sbjct: 655 DRIFVPFYTTKEKGTGLGLAICQRLVKAHQGTIQVRPAPAGEGAEFLVSLP 705 >gi|323700367|ref|ZP_08112279.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460299|gb|EGB16164.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 715 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 72/245 (29%), Gaps = 33/245 (13%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K + L + + AL L I HD + +G I E+++ D ++ Sbjct: 332 KRLEDQLRQAQKMEALGTLAGGIAHDFNNILGVILGYAEIIESGAEPDSGLERRIGEISR 391 Query: 60 AII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 A L F R ++ + + +++ + + + + ++ + Sbjct: 392 AGRRARDLVTQILNFSRQGPQERHAMTLTPLIKEALKLLRSSVPSNVGIVTRFETDRDQV 451 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISV----------------QDSKNENIFSLK 152 + +ILLNL A ++ G ++ ++ Sbjct: 452 MADATQMHQILLNLCGNAAHAMQETGGTMTITLADVHQDDPVLPPEDLGKAERFVRLTVA 511 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 NG P+ ++ D + + + V + + L E Sbjct: 512 DNGPGI-DPDVAGRVFDPFFTTKKQGEGTGMGLAMVHGIVKRHDGYLELENRPGQGATFH 570 Query: 211 ALLEK 215 L + Sbjct: 571 VFLPR 575 >gi|223932686|ref|ZP_03624685.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus suis 89/1591] gi|223898656|gb|EEF65018.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus suis 89/1591] Length = 449 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55 ++ L S + H++ +P+ ++ + LE LDE + + V + Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257 Query: 56 SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L R+ + L +Q+ + + Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQIS 317 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 I + + ++L N+ A P GG +T S++ + ++ I S+ G + Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLP 377 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + ++K + + H + +L Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432 >gi|229020690|ref|ZP_04177418.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273] gi|229026905|ref|ZP_04183229.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272] gi|228734408|gb|EEL85078.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272] gi|228740605|gb|EEL90875.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273] Length = 586 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54 + + + H++ +P+ + + LE L + +D + + Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 L+ +L + + D + D + K VS+ + Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKRSRF 464 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L N+ A P GG VT ++D S+ G E +I Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + L Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 576 >gi|251795347|ref|YP_003010078.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247542973|gb|ACS99991.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 459 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 66/230 (28%), Gaps = 21/230 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 L + L L + + I H+I +P+ +I ++LL ++ + R+ Sbjct: 228 EQTALQNDKLAMLGRIAAAIAHEIRNPLTSIRGFIQLLRPYLMQLGKEEYARIILTEIDR 287 Query: 63 RLKFMRLAFGYTGS-------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + V +I L + E ++ + + + Sbjct: 288 ANDIIFEFLNSSKPSAPMKKSVSINRLVQEVILLTESEALMRNCDIQLETYENERDLMVS 347 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKF 164 ++ +++LN+ + ++ + D +LK NG Sbjct: 348 IDVKQIKQVILNIVKNSIDAIESLQEARRGRIDLVVRSDGQFAEITLKDNGKGMDKATL- 406 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + + + + + L Sbjct: 407 ARLFDPFFTTKEAGTGLGLSVSYRIIRNHGGSIRVDSTEGSGTSFVIYLP 456 >gi|251796139|ref|YP_003010870.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247543765|gb|ACT00784.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 485 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 75/243 (30%), Gaps = 28/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I +L + L S I HD+ +PI AI +E + + DE Q + Sbjct: 226 LKQSIDQSLQYEENRKQLLSHISHDLKTPISAIKGYVEGIMDGIANTDEKRQRYMETIYH 285 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 + + +D D + + + + EK + Sbjct: 286 KANDMDQLIDELFLFSKLDLHKVAFDYKTIDSVKYLEHYLEEQRFDLEKSGVQLSFEAPP 345 Query: 117 --------------KILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNL 157 ++L N+ + + + +VT+SV++ ++ + +++ G Sbjct: 346 GVQLLIAADPDKLGRVLTNILNNSEKYMGQLPESADKRVTVSVREKGSDVLVAVEDTGPG 405 Query: 158 ARFPE---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + V + + + E + L Sbjct: 406 IEKEDLPYIFDRFYRAEQSRNSETGGSGLGLAIVKQIIEGHGGTVWAENVAGGGARFCFL 465 Query: 213 LEK 215 L + Sbjct: 466 LPR 468 >gi|229010730|ref|ZP_04167927.1| hypothetical protein bmyco0001_11850 [Bacillus mycoides DSM 2048] gi|228750404|gb|EEM00233.1| hypothetical protein bmyco0001_11850 [Bacillus mycoides DSM 2048] Length = 465 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQLYFSVIEQEIER 299 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 359 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + + Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461 >gi|71907457|ref|YP_285044.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71847078|gb|AAZ46574.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 674 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 + + + L A+ L + + H+I +PI I +L++L + + ++LI Sbjct: 434 LKAAQSQLVMNEKLAAIGQLTAGVAHEINNPIAVIQGNLDVLRDVLGPQAEPVAQEIKLI 493 Query: 54 RLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104 + + + + GY V++ + D ++ + + Sbjct: 494 HDQVQRVRLIVAKLLQFARPQDYVGYLEPVETGQLIQDCLLLVRHLLNKGDIAIEQHIDS 553 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 T + + E ++++NLF+ A ++P + D + +G Sbjct: 554 TRQILCNKNELQQVIINLFVNAIQAMPEGGVLKIAVEDWDQADMPLGIRLVVSDSGPGIS 613 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + L ++ E + + L Sbjct: 614 EADLAQLFKPFFTAKKPGGNGLGLWVSQALVERYGGKISAESGPERGASFTVWL 667 >gi|317130355|ref|YP_004096637.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475303|gb|ADU31906.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 601 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 18/227 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEV----- 49 + K I S L L + H+I +P+ I + L L E E Sbjct: 372 LEKRIQ---QSEKLALVGELAAGAAHEIRNPLAVIDGFMSLMNASLSEKEKEKYYVPLLI 428 Query: 50 --MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ I ++ K +F D L + + + ++ V + Sbjct: 429 KELERINTIIEEMLLLTKPSAPSFKMAYIEDVLNDILPLICNGQPKNSISFDVDLQ-RTA 487 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ ++L NL +L GK+ + + + ++ NG E I Sbjct: 488 LPIDQKQMKQVLHNLIRNGIEALNGDGKIALHSRIIGDHYQLFIEDNGPGI-PTELADTI 546 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + S + + V + + ++ + L Sbjct: 547 FDPFLTSKENGTGLGLTIVQRIVENHNGKIELIDTEKQGTTFLITLP 593 >gi|222095067|ref|YP_002529127.1| sensor histidine kinase; sporulation kinase [Bacillus cereus Q1] gi|221239125|gb|ACM11835.1| sensor histidine kinase; possible sporulation kinase [Bacillus cereus Q1] Length = 498 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494 >gi|218780008|ref|YP_002431326.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761392|gb|ACL03858.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 630 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 18/233 (7%), Positives = 59/233 (25%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 A++ + S ++ L + + H+I +P+ A+ ++ D G ++ + Sbjct: 393 AQSEIRLIQSEKQASVGKLAAGVAHEINNPLTAVLTFTHMILRRTDLPGEVRSDLETVAS 452 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 + +K + + + + + Q + + + Sbjct: 453 QTERVRKIVKSLLDFSRQSALTPESLDVNGLIQESVKLLENQALIKGVSLSFRGDDNLPL 512 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFPEK 163 + + + L + +L + N + G E Sbjct: 513 FTLDHNQCQSVLINMIINALDATPSGGKISIQTKRASLENANGVEIKISDTGTGI-ASEH 571 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + + + + L Sbjct: 572 MDKLFDPFFTTKEVGKGTGLGLAVSAGIIQRHGGSISVNSTLGEGTAFTIWLP 624 >gi|138894461|ref|YP_001124914.1| two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|134265974|gb|ABO66169.1| Two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] Length = 354 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 20/231 (8%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 ++ NL +M+ + S + H+I SP+ +I L + +I + Sbjct: 118 DMAANLQAMEDMRQEFISNVSHEIGSPLTSIRGFARALKNENLSQEQRMHYLDIIETECV 177 Query: 59 SAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + +D+ + + + V Sbjct: 178 RLSKLSENLLRLAMLDSERYPLHPTSYRLDTQLQTLILHCEPQWAEKDVDMCAVMEKVSI 237 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 +++ LNL A P+GG +T+ VQ + I ++ G + F Sbjct: 238 TADEDLLSQVWLNLIHNAIKFTPKGGTITVQVQRRGEQAIVTISDTGPGIPKHDQPRIFE 297 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 298 RFYKVDKSRHRAAGGSGLGLAIAKQIVDMHHGTISVQSEPGEGATFTVELP 348 >gi|23100906|ref|NP_694373.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] gi|22779140|dbj|BAC15407.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] Length = 612 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 20/232 (8%), Positives = 66/232 (28%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58 + S + H++ +P+ + + LE L + E+ + + + + Sbjct: 373 TEQQKMEQER--RDFVSNVSHELRTPLTTMKSYLEALSDGAWENKEIAPRFLDVTQKETN 430 Query: 59 SAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----E 107 I + + + + + + + + Sbjct: 431 RMIRMVNDLLQLSKMDSDELPMHKQREEFTSYLYQVLDRYEMNKPESIHMEKNIPNTKAY 490 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + ++L N+ A P GGK+ + + ++ + S++ G + + F Sbjct: 491 VWMDRDKITQVLDNVITNAIKYSPDGGKIRVKLDIRRHYLLVSIQDQGMGIAYDKLDKIF 550 Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + ++ + + + L Sbjct: 551 ERFYRVDKARNRKLGGTGLGLAITKELVEAHHGQIWAQSSEGKGTTILFTLP 602 >gi|295707318|ref|YP_003600393.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM 319] gi|294804977|gb|ADF42043.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM 319] Length = 635 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ + + L+ L + + + + + + I + + Sbjct: 408 FVANVSHELRTPLTTMRSYLDALAEGAWQDKDLAPTFLNVTQTETERMIRLVNDLLQLSK 467 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 + ++ + I E I E I ++ ++ ++L N Sbjct: 468 LDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQGISFVRDLPNEAIYVAIDQDKITQVLDN 527 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P GG +T S+ +E + S+K G F + + + Sbjct: 528 IISNAIKYSPEGGIITFSIAQHTHEIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKL 587 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + + + L Sbjct: 588 GGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLP 625 >gi|302529717|ref|ZP_07282059.1| predicted protein [Streptomyces sp. AA4] gi|302438612|gb|EFL10428.1| predicted protein [Streptomyces sp. AA4] Length = 581 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 60/232 (25%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 MA+ L + + S + H++ +P+ I LE + + +++ Sbjct: 351 MARARE-ELENARKA--MVSDVAHELRTPLSTIRGWLEAAQDGISQLDDDLVASLLEEAV 407 Query: 55 LSSMSAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +R+ + L L + V V Sbjct: 408 HLQHIVDDLQDLALADAGALRVHPEPVDANTLLTHLAAAHAPRAEAAGVSLSVPPMENPA 467 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + L NL A P GG VT++ NE F + G + F Sbjct: 468 ITADPVRLRQALDNLVSNAIRHTPPGGSVTVTASRRDNEASFEVADTGTGIAPEDLPRVF 527 Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V LA + + + Sbjct: 528 DRFWRADPSRSRVSGGSGLGLAIVRKLAEAHGGAVTAASTPGKGTTFTLRFP 579 >gi|14193095|gb|AAK55818.1|AF219111_2 putative histidine kinase [Streptococcus pneumoniae] Length = 449 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSC 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T+ ++ ++++ I S+ +G + +I D Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|152975646|ref|YP_001375163.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024398|gb|ABS22168.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 612 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 71/225 (31%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L + + L+ Sbjct: 369 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQGKYFDLMLSEIE 428 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KID 110 +F+ +A + ++ V+ + Sbjct: 429 RIESILHEFLSIAKTDIIPTEKKNLYSIMKNVVSLINTKAIMTNIQIEIISESKELVIEC 488 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GGK+ I ++ ++ I L G E+ ++ + Sbjct: 489 CENQLKQVFINILQNSIEAMPDGGKIFIHMKTNRINEVIIDLVDEGIGI-PEERIKRLGE 547 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + +++ R+ ++ L Sbjct: 548 PFYSTKEKGTGIGLMLSYKIIEQHQGRISIMSKVGVGTSVTIYLP 592 >gi|163846537|ref|YP_001634581.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|163667826|gb|ABY34192.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] Length = 470 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 76/234 (32%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + L S L A+ L + + H+I +P+ A NSL L+++ + + + + Sbjct: 231 LNAAQAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQ 290 Query: 55 LSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + MR + + + L + + + Sbjct: 291 QELGRIARIITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLP 350 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARF 160 + + ++ LN+ + A ++P GG++T+ ++ ++ G Sbjct: 351 AITAHADQLRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGI-A 409 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + + + + + ++ R+L + + LL Sbjct: 410 PEHLPHLFEPFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 463 >gi|254740391|ref|ZP_05198082.1| sensor histidine kinase KinD [Bacillus anthracis str. Kruger B] Length = 498 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + A + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 494 >gi|30261434|ref|NP_843811.1| sensor histidine kinase KinD [Bacillus anthracis str. Ames] gi|47526623|ref|YP_017972.1| sensor histidine kinase KinD [Bacillus anthracis str. 'Ames Ancestor'] gi|49184269|ref|YP_027521.1| sensor histidine kinase KinD [Bacillus anthracis str. Sterne] gi|254682503|ref|ZP_05146364.1| sensor histidine kinase KinD [Bacillus anthracis str. CNEVA-9066] gi|254733919|ref|ZP_05191633.1| sensor histidine kinase KinD [Bacillus anthracis str. Western North America USA6153] gi|254753781|ref|ZP_05205816.1| sensor histidine kinase KinD [Bacillus anthracis str. Vollum] gi|254758878|ref|ZP_05210905.1| sensor histidine kinase KinD [Bacillus anthracis str. Australia 94] gi|30255288|gb|AAP25297.1| sensor histidine kinase KinD [Bacillus anthracis str. Ames] gi|47501771|gb|AAT30447.1| sensor histidine kinase KinD [Bacillus anthracis str. 'Ames Ancestor'] gi|49178196|gb|AAT53572.1| sensor histidine kinase KinD [Bacillus anthracis str. Sterne] Length = 498 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T +++ + I + V Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + I++ + A + Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 494 >gi|331266319|ref|YP_004325949.1| signal transduction histidine kinase [Streptococcus oralis Uo5] gi|326682991|emb|CBZ00608.1| signal transduction histidine kinase [Streptococcus oralis Uo5] Length = 449 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + D V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117 + + LI I + + + + + + Sbjct: 271 IDNTTSQLDVELINFTAFITFILNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172 ++ N+ A P GGK+T+S++ + ++ I S+K G + F + Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|294501967|ref|YP_003565667.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM B1551] gi|294351904|gb|ADE72233.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM B1551] Length = 635 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ + + L+ L + + + + + + I + + Sbjct: 408 FVANVSHELRTPLTTMRSYLDALAEGAWQDKDLAPTFLNVTQTETERMIRLVNDLLQLSK 467 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 + ++ + I E I E I ++ ++ ++L N Sbjct: 468 LDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQGISFVRDLPNEAIYVAIDQDKITQVLDN 527 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P GG +T S+ +E + S+K G F + + + Sbjct: 528 IISNAIKYSPEGGTITFSIAQHTHEIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKL 587 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + + + L Sbjct: 588 GGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLP 625 >gi|293365511|ref|ZP_06612220.1| sensor histidine kinase [Streptococcus oralis ATCC 35037] gi|307703469|ref|ZP_07640411.1| two-component sensor histidine kinase [Streptococcus oralis ATCC 35037] gi|315613221|ref|ZP_07888131.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296] gi|291315879|gb|EFE56323.1| sensor histidine kinase [Streptococcus oralis ATCC 35037] gi|307622876|gb|EFO01871.1| two-component sensor histidine kinase [Streptococcus oralis ATCC 35037] gi|315314783|gb|EFU62825.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296] Length = 449 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + D V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117 + + LI I + + + + + + Sbjct: 271 IDNTTSQLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172 ++ N+ A P GGK+T+S++ + ++ I S+K G + F + Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|220911752|ref|YP_002487061.1| histidine kinase [Arthrobacter chlorophenolicus A6] gi|219858630|gb|ACL38972.1| histidine kinase [Arthrobacter chlorophenolicus A6] Length = 551 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 18/219 (8%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-------- 63 L A S + H+ +P+ +I +E+L E+ +++ + ++ Sbjct: 332 LAAKDDFVSSVSHEFRTPLTSILGYVEILLADEPEESQEEMLEIIRRNSERLLTLVSDLL 391 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + ++ + + V + E +++L Sbjct: 392 ASRNGQLIVSPHTVDVAELVRTSVSSALPKATASGVVLAAETPDQLEAHVDGARISQVLD 451 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----ST 175 NL A P GG V +S+ + G + + Sbjct: 452 NLVSNAIKYSPDGGNVLVSLARDDGHLECRVTDTGMGMTPEDASEVFAKFFRTSNVRRTA 511 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + Sbjct: 512 IPGVGLGLPISKAIVEAHGGTISVDSTLGQGTTFTFRVP 550 >gi|153004892|ref|YP_001379217.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028465|gb|ABS26233.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 927 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLVA-------------LLCSRICHDIISPIGAIHNSLELLDEVG---- 44 K+ +S +L A S + H++ +P+ +I E+L + Sbjct: 659 QKSRALETASAELRAANAQLQELDRMKDEFMSSVTHELRTPLTSIRAFSEILRDDPKAPI 718 Query: 45 -IEDEVMQLIRLSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIA 95 + +I S + + + +D + D + Sbjct: 719 AERVRFLAIIVKESERLTRLIDQLLDMAKIESGNAEWHAAELDVREAIQDSVEATSQLFR 778 Query: 96 ---VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152 V+ V + ++++NL A PRGG+V + + + ++ Sbjct: 779 DSGVELAVALQPAPRVRADRDRLVQVIMNLLSNAVKFCPRGGRVEVRLAPAPEGVRVDVQ 838 Query: 153 INGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 +G ++ + + RL E Sbjct: 839 DDGPGISPADQDIIFEKFRQVSDTLTGKPRGTGLGLPISRRIVEHFGGRLWVESELGRGA 898 Query: 208 VLSALLE 214 S +L Sbjct: 899 TFSFVLP 905 >gi|239616420|ref|YP_002939742.1| multi-sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505251|gb|ACR78738.1| multi-sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 899 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 19/228 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K + F + AL + +++ H+I +PI I + +++ Q + + + Sbjct: 662 LEKELRFR---EKMAALGEMSAKVAHEIRNPITIISGFTRRIARTRDREKIQQYVEILNR 718 Query: 59 SAIIRLKFMRLAFGYTGS------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + Y+ ++ + + + + + V+ Sbjct: 719 ELERLETIVNDVLDYSRRAKKKENIESVNALELCQEIANGFKDLAKKKGISLIVEGDEET 778 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++NL A + G V I V+ ++ S+ G PE + Sbjct: 779 VFVGNKNRMKQVIINLVQNAIEASEDNGIVKIEVEFAQENVRISVWNKGKEI-PPEILRR 837 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ + + D + + L Sbjct: 838 VFEPFFTTKTFGTGLGLSICKRIVEEHGGNITAQS-DSNGTIFVVSLP 884 >gi|307264990|ref|ZP_07546551.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919975|gb|EFN50188.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 66/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLS 56 MA+ + ++ S I H++ +P+ +I +L+++ E + +I Sbjct: 229 MAEELG---QLEEMKNEFISNISHELKTPLTSIKGFAITAMDLVEKNSELYEYLNIIDEE 285 Query: 57 SMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104 + + + V+ + D ++ + D + Sbjct: 286 TDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNDGVNLICKKKID 345 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L+N+ + RG V + + + + ++ G E Sbjct: 346 RVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEIK 405 Query: 165 TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+K + E V + L Sbjct: 406 YIFDKFYRGKNNKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELP 457 >gi|108759478|ref|YP_633915.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|78369894|gb|ABB43052.1| PilS2 [Myxococcus xanthus DK 1622] gi|108463358|gb|ABF88543.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 373 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 78/227 (34%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 +A+ ++S + + L + + H++ +P+ I + L + + ++ I Sbjct: 146 LARTQTELVASERMATVGRLAAGVAHEVGNPLAGILGYVALARVKADTPELKDFLERIDH 205 Query: 56 SSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEK 108 ++ + R G V+ + +++ V + + Sbjct: 206 EVQRIDRIIRGLLDLGRPGVTSLGPVEVGPVVETCVRLVRASPELSGVTVTLDLEPGALA 265 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++I++NL + A ++ G+V ++ + + E ++ +G + ++ Sbjct: 266 RTDAGPLSQIVINLLLNAAQAMGGQGRVRVATRQAAGEVRLLVEDDGTGI-PEDVMPRLF 324 Query: 169 DGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + LA RL E I + L Sbjct: 325 EPFFTTKGREGTGLGLAVSQRLAQVMGGRLEAENIPSGGARFTVCLP 371 >gi|150016898|ref|YP_001309152.1| osmosensitive K+ channel signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903363|gb|ABR34196.1| osmosensitive K+ channel signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 861 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 K + S L + L I HD+ SP+ I ++ ELL + Sbjct: 620 QKKSNLEIESERLRSNLLRSISHDLRSPLAGIKGAVSTIIETGNLISEETKGELLQGIYD 679 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + E + + + +S V+ ++ + Sbjct: 680 DTEWLIRLVENLLSMTRFDGGNLKVRKSIEIVEEVVYEAVQRTAKRFRDYKMEVTVPEEV 739 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L+NLF A P+G + + + ++ IF + NG Sbjct: 740 IMVPMDGSLIEQVLINLFDNAVKFTPKGSLIEVKIYENNKNVIFEVIDNGMGISEEILPH 799 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + D+ V + K Sbjct: 800 IFERFFTNGDKISDSRRGVGLGLAICKSIVEAHGGTISAHNKDEGGAVFRFNIPK 854 >gi|241895844|ref|ZP_04783140.1| histidine protein kinase; sensor protein [Weissella paramesenteroides ATCC 33313] gi|241870887|gb|EER74638.1| histidine protein kinase; sensor protein [Weissella paramesenteroides ATCC 33313] Length = 627 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 67/225 (29%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLA 70 S + H++ +P+ ++ + ++ L + +ED + ++ + + L+ Sbjct: 383 QFVSNVSHELRTPLTSVKSYVDALQDGAVEDPEVAHNFLQVAQDETTRMIHMINDLLELS 442 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------- 116 +G++ +I + + + + + + +R Sbjct: 443 RMDSGTMKLEKEYINIAALFNYILDRFDMIIANDDKPEKYYTIKRMIPQLQIWVEIDTSK 502 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +++ N+ A P GG +T ++D +E + S+ G Sbjct: 503 FTQVIDNIMNNAIKYSPDGGVITARLEDRDSEVVLSITDQGLGIPKSNMKQIFDRFFRVD 562 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ E + S L Sbjct: 563 KARSRAQGGTGLGLAISKEIIERFNGRVWVESTEGEGSTFSIALP 607 >gi|118580923|ref|YP_902173.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503633|gb|ABL00116.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 543 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 67/226 (29%), Gaps = 22/226 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63 S L L L +R+ H+I +P+ A+ S++LL + + ++ +I + Sbjct: 318 RSDKLAVLGSLAARMAHEIRNPLAAMSGSVQLLADHGTVAENDQRLLAIILRETDRLNAL 377 Query: 64 LKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + F + QV + Sbjct: 378 ITSFLTYARPVSPHKERISLGGLIDEVRLLVSSDRRFGGITLTAQVPERMTISADQNQLR 437 Query: 117 KILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++L+NL A ++P ++ + ++ +G+ E + Sbjct: 438 QVLINLLNNAAEAMPEGGRVEISAHLASPEDGDRAEQRAVITVSDSGSGI-TDEVAAHLF 496 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + E+ + E ++ L Sbjct: 497 EPFWTTKSDGCGLGLAITYRIIEEHGGTITAESPPWGGCRITISLP 542 >gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] Length = 776 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 61/239 (25%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + S+ + + + H+I +P+ I ELL++ +++E ++ S Sbjct: 116 LRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSG 175 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 M + V Q + + V + Sbjct: 176 EALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEV 235 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 + +IL+NL A +G + F+++ G Sbjct: 236 PRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAWVAFTVEDTGIGIPE 295 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K + + L K + + LL Sbjct: 296 NKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSKEGEGSSFWFLLP 354 >gi|229195630|ref|ZP_04322396.1| hypothetical protein bcere0001_11970 [Bacillus cereus m1293] gi|228587879|gb|EEK45931.1| hypothetical protein bcere0001_11970 [Bacillus cereus m1293] Length = 486 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 482 >gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] Length = 593 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 KN S + H++ +P+ ++ +E L++ ++ + + +I+ Sbjct: 349 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 401 Query: 57 SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + I + + L + + +R+ Sbjct: 402 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 461 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ N+ A P GG +TI + + I S+ G Sbjct: 462 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 521 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + ++ + + + + Sbjct: 522 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 579 >gi|149908794|ref|ZP_01897454.1| putative sensor histidine kinase [Moritella sp. PE36] gi|149808068|gb|EDM68009.1| putative sensor histidine kinase [Moritella sp. PE36] Length = 681 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 69/235 (29%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + S L AL L + I H+I +P I ++ELL D+ E ++ I Sbjct: 431 LNQTRSKLVMSEKLAALGELTAGIAHEINNPTAVILGNVELLQLELGDDSQRVSEELEAI 490 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSW 104 + + G D + V E V + Q+ Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEITWQHLNLIVKESLTLVSSGTKSANVQIKSQLDA 550 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIFSLKINGNLA 158 + ++L+NL M ++ + + D+ + + +G Sbjct: 551 KCCVEVNRHQLLQVLVNLQMNGVHAMDDKGLLKIKTEDWRNDDDNVIGAVVHISDHGCGI 610 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I D + + + E ++ + S L Sbjct: 611 -SEDNLARIFDPFFTTRRSGTGLGLSVSQSIISEVGGKITVQSELGIGSTFSIYL 664 >gi|146319012|ref|YP_001198724.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33] gi|146321222|ref|YP_001200933.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33] gi|253752079|ref|YP_003025220.1| sensor histidine kinase [Streptococcus suis SC84] gi|253753904|ref|YP_003027045.1| sensor histidine kinase [Streptococcus suis P1/7] gi|253755221|ref|YP_003028361.1| sensor histidine kinase [Streptococcus suis BM407] gi|145689818|gb|ABP90324.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33] gi|145692028|gb|ABP92533.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33] gi|251816368|emb|CAZ51999.1| sensor histidine kinase [Streptococcus suis SC84] gi|251817685|emb|CAZ55433.1| sensor histidine kinase [Streptococcus suis BM407] gi|251820150|emb|CAR46487.1| sensor histidine kinase [Streptococcus suis P1/7] gi|292558662|gb|ADE31663.1| Pas [Streptococcus suis GZ1] gi|319758446|gb|ADV70388.1| Signal transduction histidine kinase [Streptococcus suis JS14] Length = 449 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55 ++ L S + H++ +P+ ++ + LE LDE + + V + Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257 Query: 56 SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L R+ + L +Q+ + + Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQIS 317 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 I + + ++L N+ A P GG +T S++ + ++ I S+ G + Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLP 377 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + ++K + + H + +L Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432 >gi|323442919|gb|EGB00542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus O46] Length = 546 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542 >gi|323440764|gb|EGA98473.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus O11] Length = 546 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542 >gi|312830070|emb|CBX34912.1| sensory box protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727161|gb|EGG63617.1| putative alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus 21172] gi|329733268|gb|EGG69605.1| putative alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus 21193] Length = 546 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542 >gi|302333357|gb|ADL23550.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus JKD6159] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|298694962|gb|ADI98184.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus ED133] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDPQSLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|294848713|ref|ZP_06789459.1| two-component system [Staphylococcus aureus A9754] gi|294824739|gb|EFG41162.1| two-component system [Staphylococcus aureus A9754] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|283470959|emb|CAQ50170.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus ST398] Length = 546 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542 >gi|282927822|ref|ZP_06335433.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A10102] gi|282590332|gb|EFB95411.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A10102] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|269941172|emb|CBI49559.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus TW20] gi|302751518|gb|ADL65695.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|329314364|gb|AEB88777.1| Sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus T0131] gi|329728409|gb|EGG64846.1| putative alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus aureus subsp. aureus 21189] Length = 546 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542 >gi|258424108|ref|ZP_05686990.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9635] gi|257845729|gb|EEV69761.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9635] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|193216009|ref|YP_001997208.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089486|gb|ACF14761.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1544 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59 + M+ + LL S I HD+ + + I S+ELL + E +Q I S+ Sbjct: 1163 QEQILRAQRMESIGLLASGIAHDMNNILTPIMMSMELLKEIVDDEEGFERIQTINKSTRR 1222 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------S 112 A ++ + + L + + +F+ + + Sbjct: 1223 AKNLIQQLLAFARGKSEQQIPVNLRRLILELTNFMKETFPRSIQLSVNIPKNLPFILGDP 1282 Query: 113 RERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLKINGNL 157 + ++L+NL + AH ++P GG+++ + N +K G Sbjct: 1283 TQIHQVLMNLCVNAHDAMPDGGQLSISSEKISLSEAETKLHIDAKAGNYIKVIVKDTGTG 1342 Query: 158 ARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + H + + + + Sbjct: 1343 I-PNEHLHKIFEPFFTTKQQGKGSGLGLAMTYTIVHNHGGFITVDSEERKGTAFEIYFP 1400 >gi|160895407|ref|ZP_02076176.1| hypothetical protein CLOL250_02964 [Clostridium sp. L2-50] gi|156862909|gb|EDO56340.1| hypothetical protein CLOL250_02964 [Clostridium sp. L2-50] Length = 533 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + +++ + + L S I HD+ +PI I +E L + +D +++I Sbjct: 282 LNESVELKMQYEEENRELISNISHDLKTPITTIKGYVEGLMDGVADTPEKQDRYLKMIYN 341 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + L T + + + + R + + + Sbjct: 342 KANELDALINELSLYTNITNNAIPYEFHRVSVKDYFNDCMEEVRADLLSHNMTLTYNNYC 401 Query: 116 -------------AKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 +++ N+ A + + IS+++S+ S+ +G Sbjct: 402 AEDVKVVVDPDQLKRVINNVVTNAIKYTDKEEGHIDISIEESEKMIKVSINDDGRGIDKE 461 Query: 162 EKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + E+ ++ + L+K Sbjct: 462 SLPHIFDRTYRADNARRSRGGSGLGLAICKKIVEEHGGKIWATSTKGEGTTIYFTLKK 519 >gi|87160006|ref|YP_494333.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195499|ref|YP_500303.1| histidine kinase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87125980|gb|ABD20494.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203057|gb|ABD30867.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase domain protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 553 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 325 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 384 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 385 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 444 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 445 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 503 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 504 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 549 >gi|57650563|ref|YP_186576.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus COL] gi|151221797|ref|YP_001332619.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus str. Newman] gi|161509906|ref|YP_001575565.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142558|ref|ZP_03567051.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451794|ref|ZP_05699816.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948] gi|262048662|ref|ZP_06021545.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus D30] gi|262052263|ref|ZP_06024468.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus 930918-3] gi|282920232|ref|ZP_06327957.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A9765] gi|284024740|ref|ZP_06379138.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus 132] gi|304380717|ref|ZP_07363386.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284749|gb|AAW36843.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus COL] gi|150374597|dbj|BAF67857.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus str. Newman] gi|160368715|gb|ABX29686.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860506|gb|EEV83332.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948] gi|259159864|gb|EEW44903.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus 930918-3] gi|259163309|gb|EEW47868.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus D30] gi|282594580|gb|EFB99565.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A9765] gi|304340716|gb|EFM06647.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198611|gb|EFU28939.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus CGS01] gi|320140429|gb|EFW32283.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131] gi|320143968|gb|EFW35737.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|82751280|ref|YP_417021.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus RF122] gi|82656811|emb|CAI81240.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus RF122] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|49486518|ref|YP_043739.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MSSA476] gi|49244961|emb|CAG43422.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 585 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIRLKFM------- 67 + + H++ +PI +I E L + + + + +I S ++ + Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMKNQKFCEHFLHIILKESERMQDLIEDLLDLSKIE 425 Query: 68 -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123 + G+VD L DI+ V++ + V + + + + +I +NL Sbjct: 426 QQGFKLNMGNVDIKDLLEDIKMVLDKKAQDKEIVLQMDAMQHVSVIGDSSRLKQIFINLV 485 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG V++S+ + + + G E +I + Sbjct: 486 HNAIIYTPVGGTVSVSLFEDEQNAYVQVADTGIGISKEEIP-RIFERFYRVDKARSRNTG 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + E + + L K Sbjct: 545 GTGLGLSIVKHLVEAHHGMITVESKVGEGTMFTVALPK 582 >gi|134299370|ref|YP_001112866.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052070|gb|ABO50041.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 575 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 72/220 (32%), Gaps = 15/220 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF- 66 S L+AL L + + H++ +PIG I +EL+ + + + + + R Sbjct: 339 QSEHLIALGRLATGVAHELRNPIGIIKTLVELMKDEYSQVSGIDEFTKAVDEQVDRQNMV 398 Query: 67 ------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRER 115 + S+ L + + V V + + + + Sbjct: 399 IQELLDFGRPTKVSIKECSVNDLLKGVLSFSAAMLRKENVTVHLHLDESLPKIMADTEKL 458 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +NL + A ++P GG + I + S+N + G EK +I D + Sbjct: 459 KQVFVNLIVNAAEAMPSGGTLDIKTEQSENLVTVTFSDTGEGIDLEEKS-KIFDPFYTTK 517 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + + + L + Sbjct: 518 KAGTGLGLSISYQNIKLHEGTIEVSSTRNKGTTFTIRLPR 557 >gi|15924682|ref|NP_372216.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927270|ref|NP_374803.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus N315] gi|21283365|ref|NP_646453.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MW2] gi|148268172|ref|YP_001247115.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|150394239|ref|YP_001316914.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1] gi|156980009|ref|YP_001442268.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu3] gi|253317164|ref|ZP_04840377.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732343|ref|ZP_04866508.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734524|ref|ZP_04868689.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|255006476|ref|ZP_05145077.2| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794077|ref|ZP_05643056.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9781] gi|258415781|ref|ZP_05682052.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9763] gi|258421982|ref|ZP_05684902.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9719] gi|258438260|ref|ZP_05689544.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A9299] gi|258443718|ref|ZP_05692057.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A8115] gi|258445929|ref|ZP_05694105.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6300] gi|258448390|ref|ZP_05696507.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6224] gi|258454129|ref|ZP_05702100.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A5937] gi|269203310|ref|YP_003282579.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus ED98] gi|282893187|ref|ZP_06301421.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A8117] gi|295406002|ref|ZP_06815810.1| two-component system [Staphylococcus aureus A8819] gi|296274881|ref|ZP_06857388.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus MR1] gi|297207595|ref|ZP_06924030.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245072|ref|ZP_06928949.1| two-component system [Staphylococcus aureus A8796] gi|300911676|ref|ZP_07129120.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus TCH70] gi|13701488|dbj|BAB42782.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus N315] gi|14247464|dbj|BAB57854.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204805|dbj|BAB95501.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MW2] gi|147741241|gb|ABQ49539.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|149946691|gb|ABR52627.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1] gi|156722144|dbj|BAF78561.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus Mu3] gi|253723865|gb|EES92594.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727465|gb|EES96194.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|257788049|gb|EEV26389.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9781] gi|257839374|gb|EEV63847.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9763] gi|257842026|gb|EEV66455.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A9719] gi|257848304|gb|EEV72295.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A9299] gi|257851124|gb|EEV75067.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus A8115] gi|257855171|gb|EEV78110.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6300] gi|257858358|gb|EEV81243.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A6224] gi|257863581|gb|EEV86338.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus A5937] gi|262075600|gb|ACY11573.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus ED98] gi|282764505|gb|EFC04631.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus A8117] gi|285817375|gb|ADC37862.1| Phosphate regulon sensor protein PhoR [Staphylococcus aureus 04-02981] gi|294968999|gb|EFG45020.1| two-component system [Staphylococcus aureus A8819] gi|296887612|gb|EFH26510.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178152|gb|EFH37400.1| two-component system [Staphylococcus aureus A8796] gi|300887097|gb|EFK82298.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus TCH70] gi|315130674|gb|EFT86660.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus CGS03] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + + + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|328555723|gb|AEB26215.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens TA208] gi|328914109|gb|AEB65705.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens LL3] Length = 611 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 26/231 (11%) Query: 10 SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAI 61 L + + H++ +P+ + + LE L E E+ + + + + I Sbjct: 369 EQEKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKEIAPRFLMVTQNETERMI 428 Query: 62 IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + + + D ++ ++ R Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMTKEQHVEFIRELPDRNLYVEI 488 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK---FT 165 + ++L N+ A P GG VT SV ++ E S+K G + F Sbjct: 489 DQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVFD 548 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + ++ ++ L Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599 >gi|308175749|ref|YP_003922454.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM 7] gi|307608613|emb|CBI44984.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM 7] Length = 611 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 26/231 (11%) Query: 10 SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAI 61 L + + H++ +P+ + + LE L E E+ + + + + I Sbjct: 369 EQEKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKEIAPRFLMVTQNETERMI 428 Query: 62 IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + + + D ++ ++ R Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMTKEQHVEFIRELPDRNLYVEI 488 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK---FT 165 + ++L N+ A P GG VT SV ++ E S+K G + F Sbjct: 489 DQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVFD 548 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + ++ ++ L Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599 >gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 598 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 72/234 (30%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 ++I + +L + + H++ +PI +I + E L D+ + +I S Sbjct: 364 QDITESRRLEELRRDFVANVSHELKTPITSIKSYTETLLDGAIDDKDTATSFLTVINNES 423 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108 +K + +S I ++ ++++ + +K Sbjct: 424 DRMNNIIKDLLQLSHMDYKKESWDLALTDINALTKDCILKMTLYADMKNQKIVGEISNDK 483 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + + + ++++NL A G + + + + S+ +G + Sbjct: 484 LPVIIDKSKFEQVIINLVSNAIKYTNDNGTIIVKTFVNDGKCHISVTDDGIGIPEKDLPF 543 Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + ++ + + E+ + + ++ Sbjct: 544 IFDRFYRVDKGRSRSLGGTGLGLSICESIIAEHGGTISVTSTFGEGSTFTVIIP 597 >gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 732 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----------------- 44 AK + + + + + H++ +P+ +I ++L E Sbjct: 495 AKGMAEAANQTK--SQFLANMSHELRTPLNSIIGFSDVLLEEAFGKLNEKQKKYTHNINT 552 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ +I + I M L G + + L + + + + + S Sbjct: 553 SGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTLEPLVKKKQLILDLDTSL 612 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++L NL A P GK+ I + + E S+ +G PE+ Sbjct: 613 EYPVYADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDCGEEEITISVSDSGIGI-PPEEQ 671 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V + + ++ E L Sbjct: 672 DKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWVESEAGKGSTFKFTLP 727 >gi|154688138|ref|YP_001423299.1| YycG [Bacillus amyloliquefaciens FZB42] gi|154353989|gb|ABS76068.1| YycG [Bacillus amyloliquefaciens FZB42] Length = 611 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 26/231 (11%) Query: 10 SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAI 61 L + + H++ +P+ + + LE L E E+ + + + + I Sbjct: 369 EQEKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETERMI 428 Query: 62 IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + + + D ++ ++ R Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMTKEQHVEFIRELPDRNLYVEI 488 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK---FT 165 + ++L N+ A P GG VT SV ++ E S+K G + F Sbjct: 489 DQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVFD 548 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + ++ ++ L Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599 >gi|331082842|ref|ZP_08331964.1| hypothetical protein HMPREF0992_00888 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400171|gb|EGG79820.1| hypothetical protein HMPREF0992_00888 [Lachnospiraceae bacterium 6_1_63FAA] Length = 245 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 14/223 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + L L S + H+I +P+ I++ L+LL+ E + + + Sbjct: 21 RQLYEELQVQQQFTL--SHVSHEIRNPVTLINSFLQLLESHHPELKEDKYWGKIMENMDF 78 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKIDL 111 + + S I D+ +++E+ A S+ Sbjct: 79 LKTLLNEFSSFNNSGKLNIQELDLSELLENLAASSLPTLESYNVSLVLNIEPNLPVIQAD 138 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++++LNL + ++ G + S+ +N + S+K NG+ + + Sbjct: 139 KTKMSQLILNLLRNSSEAIKTEGIIHCSLTSQENYLVLSVKDNGSGIPVLY-QEDLFEPF 197 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A + + + + + + LL Sbjct: 198 ITHKQEGTGLGLPICKRIAEAHNGSISFQSVPEKGTEFTVLLP 240 >gi|260587071|ref|ZP_05852984.1| putative sensor histidine kinase [Blautia hansenii DSM 20583] gi|260542561|gb|EEX23130.1| putative sensor histidine kinase [Blautia hansenii DSM 20583] Length = 265 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 14/223 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + L L S + H+I +P+ I++ L+LL+ E + + + Sbjct: 41 RQLYEELQVQQQFTL--SHVSHEIRNPVTLINSFLQLLESHHPELKEDKYWGKIMENMDF 98 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKIDL 111 + + S I D+ +++E+ A S+ Sbjct: 99 LKTLLNEFSSFNNSGKLNIQELDLSELLENLAASSLPTLESYNVSLVLNIEPNLPVIQAD 158 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++++LNL + ++ G + S+ +N + S+K NG+ + + Sbjct: 159 KTKMSQLILNLLRNSSEAIKTEGIIHCSLTSQENYLVLSVKDNGSGIPVLY-QEDLFEPF 217 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A + + + + + + LL Sbjct: 218 ITHKQEGTGLGLPICKRIAEAHNGSISFQSVPEKGTEFTVLLP 260 >gi|322435821|ref|YP_004218033.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321163548|gb|ADW69253.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 987 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 78/228 (34%), Gaps = 24/228 (10%) Query: 10 SSMDLVA--LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S L + LL + + H++ +P+ I + ++L + V++ I + A Sbjct: 743 QSEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLSKQLRDDVRIAPVLEKITQQTFRASEI 802 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT-----GEKIDLSRER 115 + + +G+ I L + + ++ + R+++ + Sbjct: 803 VNGLLNFSRTSGAEFVSIDLNQLLRDSAILLEHQFKTARIRLDQELAPDLARIQGNQGKL 862 Query: 116 AKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 +++LNL + A ++ +TI+ ++ ++ I ++ G+ E +I D Sbjct: 863 QQVILNLMLNAKDAMQGTSTGLITIATRNEHDQVILEIRDTGSGI-EREHLHRIFDPFFT 921 Query: 174 ST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ ++ + + Sbjct: 922 TKTNPQPGQHKGTGLGLAVSYGILQEHGGKITVDSEPGQGTTFRLEIP 969 >gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 1363 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + L + + + H+I +P+ AI ELL + + + + ++ S+ Sbjct: 830 LRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPLSERQREFVQTIQTSS 889 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSW 104 L + ++ + L +++ + I++ V + Sbjct: 890 QSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTI 949 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARF 160 I ++LLNL A +G + DS+ E +F ++ G Sbjct: 950 PRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAADSEVELLFEVRDTGIGIDS 1009 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + L + E Sbjct: 1010 AHLG-KLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGSTFRFT 1066 >gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 409 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 +S+ L + + + H+I +P+ AI LL + E + + + + Sbjct: 179 EKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLASTDDDAEKKMYLDIVAENNHRL 238 Query: 64 LKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGE 107 L+ + + D L + ++E + +++ + Sbjct: 239 LQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLHGILEIRLKDKPDIKLVCEAGTDEWM 298 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +IL NL A G + + F + G E +I Sbjct: 299 IYSEQQRIVQILTNLVHNAIKFTQNGEIRFGCRPHGETDVYFYVSDTGIGIPVGE-QDKI 357 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E L Sbjct: 358 FDRFTKLDHEVPGTGLGLTLSQTIVQSLGGEIGVESEVTKGSTFWFTLP 406 >gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] Length = 807 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 54/228 (23%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E + Q + + + Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ T + ++ + Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVPAGVELVFEKCLPECH 688 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A G + + F ++ G + T Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 748 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + E + Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796 >gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16] gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16] Length = 870 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + ++ + + H+I +P+ I E+L + + +++ S+ Sbjct: 369 AKEHAEAANQAK--SVFLANMSHEIRTPLNGIIGMTEILSDSQLNGSQKEILNDIDASSH 426 Query: 62 IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + + ++ V V+ + Sbjct: 427 ALLVLINDILDLSKIESGNLVLSPHTANLREIIFDTMNMVNAQALKQEVTLEVEFADDVP 486 Query: 108 KI--DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +IL+NL A G + D+++ + G + Sbjct: 487 VYAEMDEFRVKQILMNLLSNAIKFSANGSVLVRHSVDTQHRLNIEVLDTGVGIAADKLSD 546 Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + L + L+ E + +L Sbjct: 547 IFKPFTQEDGTITRRFGGTGLGLAICRQLVELMRGELVVESNVGEGSRFTVILP 600 >gi|119716165|ref|YP_923130.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119536826|gb|ABL81443.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 535 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 K++ + ++ + + + H++ +P+ +I ++L E ++++ +S Sbjct: 301 KDVTDFMRALRVKDEFVASVSHELRTPLTSIVGYTQMLLERDDLPADVVAQLEVMARNSG 360 Query: 59 SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGE 107 + + VD + D + +++ T Sbjct: 361 RLHRLVADLLHTARLDEGGAPLVRAPVDLAAVVRDCVEAAAPAARRSGVELVLELPPTLV 420 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 A+++ NL A GG V +++ + + G ++ Sbjct: 421 LRADQERLAQVVDNLVSNAVKYTSAGGCVQVTLLLDGDRAELCVADTGIGIAAADRDRLF 480 Query: 168 VDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E V L Sbjct: 481 TRFFRARQAEERSIQGVGLGLSITKAIVESHGGRIEVESELGRGSVFRVRLP 532 >gi|149919249|ref|ZP_01907732.1| two-component hybrid sensor and regulator [Plesiocystis pacifica SIR-1] gi|149819963|gb|EDM79385.1| two-component hybrid sensor and regulator [Plesiocystis pacifica SIR-1] Length = 743 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 64/228 (28%), Gaps = 19/228 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 + AL L S + HD + + I ELL +E ++LI + Sbjct: 373 QAQLAQRDKMDALGLLASGVAHDFNNMLTGILGGAELLRATISPEEEEDALPFIELISDA 432 Query: 57 SMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + VD + + ++ + ++Q + Sbjct: 433 AERSAELTAQLLSFSRKSHVELSPVDVHASVREAVALLRRSLDKRVQIQTRLDAAHATVI 492 Query: 113 RERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +R ++L L + + + + ++ G+ + +I Sbjct: 493 GDRGRLLSALINLGVNASHAMHGGGKLTFSTRLREPTQLEIEVRDTGSGI-SEDNLARIF 551 Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + ++ + + L Sbjct: 552 EPFFTTKKEGKGTGLGLAAVQGIIEQHGGSVAVDSELGVGTSFYLRLP 599 >gi|326390091|ref|ZP_08211653.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325993956|gb|EGD52386.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 65/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLS 56 MA+ + ++ S I H++ +P+ +I +L+++ E + +I Sbjct: 229 MAEELG---QLEEMKNEFISNISHELKTPLTSIKGFAITAMDLVEKNSELYEYLNIIDEE 285 Query: 57 SMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104 + + + V+ + D ++ + + Sbjct: 286 TDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNYGVNLICKKKID 345 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L+N+ + RG V + + + + ++ G E Sbjct: 346 RVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEIK 405 Query: 165 TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+K + E V + L Sbjct: 406 YIFDKFYRGKNNKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELP 457 >gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 483 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + I H++ +P+ A+ LE L + + + + + Sbjct: 259 ANISHELRTPLTAMKGFLEALQDGLVKDTESQQKYYAIMYRETEYLNHLVNDLMDLIKLE 318 Query: 78 DSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122 I L + + + + + + + +I N+ Sbjct: 319 RQDISLDLYCVHLQEIIRKVALNLQPSIESRNNDIIIDAPDNIPPVIGDSIRLEQIFKNI 378 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TID 177 A+ G + K+ + NG + + + + Sbjct: 379 IHNANKFTENGSITIKLEEHCKDNVCVKISDNGIGIPSYDVKRIWERFFKVDRVRQKKER 438 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + E + Sbjct: 439 GTGLGLAIVKELVQLHHGEITVESELGVGTTFTIFFP 475 >gi|282924834|ref|ZP_06332500.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C101] gi|282313200|gb|EFB43596.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C101] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + ++ + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|49483934|ref|YP_041158.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425807|ref|ZP_05602231.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428473|ref|ZP_05604871.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431107|ref|ZP_05607484.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433790|ref|ZP_05610148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257436706|ref|ZP_05612750.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M876] gi|282904263|ref|ZP_06312151.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus C160] gi|282906088|ref|ZP_06313943.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus Btn1260] gi|282909003|ref|ZP_06316821.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911319|ref|ZP_06319121.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WBG10049] gi|282914488|ref|ZP_06322274.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M899] gi|282919457|ref|ZP_06327192.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C427] gi|283958443|ref|ZP_06375894.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus A017934/97] gi|293503566|ref|ZP_06667413.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus 58-424] gi|293510581|ref|ZP_06669286.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M809] gi|293537123|ref|ZP_06671803.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M1015] gi|295428263|ref|ZP_06820892.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590774|ref|ZP_06949412.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus MN8] gi|49242063|emb|CAG40762.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271501|gb|EEV03647.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275314|gb|EEV06801.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278055|gb|EEV08703.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281883|gb|EEV12020.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257284057|gb|EEV14180.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M876] gi|282317267|gb|EFB47641.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus C427] gi|282321669|gb|EFB51994.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M899] gi|282325014|gb|EFB55324.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WBG10049] gi|282327267|gb|EFB57562.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331380|gb|EFB60894.1| two-component system OmpR family phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus Btn1260] gi|282595881|gb|EFC00845.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus C160] gi|283790592|gb|EFC29409.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus A017934/97] gi|290919968|gb|EFD97036.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp. aureus M1015] gi|291095232|gb|EFE25497.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Staphylococcus aureus subsp. aureus 58-424] gi|291466472|gb|EFF08993.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus M809] gi|295127663|gb|EFG57300.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575660|gb|EFH94376.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus MN8] gi|312437850|gb|ADQ76921.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus aureus subsp. aureus TCH60] Length = 554 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + ++ + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550 >gi|205373671|ref|ZP_03226474.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4] Length = 427 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 73/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K + S + + L + + H+I +P+ ++ ++L+ + ++ Sbjct: 202 KKKEEMMIVSEKMSVIGQLAAAVAHEIRNPLTSLKGFVQLMQTSKEYNSNYLSIMFSEIE 261 Query: 59 SAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKI 109 + + + + + V+ + A + + + + Sbjct: 262 RINLIAGEMLILGKQQDIRFAKKDSKEILKQVLVLMEAQANLNNIAIECVDETTASTNVL 321 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S + ++ +N+ A S+P G++ I ++ ++ I + NG+ E+ ++ + Sbjct: 322 CDSNQLKQVFINVIKNALESIPSNGRIYIRMKSLPHKVIIEIVDNGHGI-DQERLDRLGE 380 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + +L Sbjct: 381 PFYSTKEKGTGLGLAVSYSIIERHSGSIHITSEVGKGTKVDIILP 425 >gi|189424217|ref|YP_001951394.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189420476|gb|ACD94874.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 491 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 73/227 (32%), Gaps = 16/227 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58 + + + S L +L + + + H++ +P+GAI+ S+ L++ G + M++I+ Sbjct: 256 KRAVTQLVQSEKLASLGKIVAGVAHEVNNPLGAINASIYNLEQKSGNQLRNMEIIKQGVE 315 Query: 59 SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ + + + + + + Sbjct: 316 RIERIVRQLSDFSRTASLELQPLASEGFFSECAEFSRVALKRFDVELVTEDRCAPALMLQ 375 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++LLNL A + P G + +S Q + ++ G+ PE + D Sbjct: 376 LDKGKIQQVLLNLLFNAAQASPLRGIIRLSAQLTPGYYQLEVEDQGSGI-PPEAQRTVFD 434 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + + V + L Sbjct: 435 IFYTTKHAGEGTGIGLAICKSIVEMHGGTITFSSRPGK-TVFTVSLP 480 >gi|115376273|ref|ZP_01463513.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115366698|gb|EAU65693.1| sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 564 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 70/227 (30%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57 + + + L AL L +++ H+I +P+ A+ S ++L + + V++L + Sbjct: 324 LRRAEDELRRADRLAALGTLAAQLAHEIRNPLAAMRGSAQMLAQDGAEDPSVVRLTNILL 383 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + L + + + V +S + Sbjct: 384 RESDRLSRLVEEFLRFARPPPPQRRVAALDELIRETVEMLQADPLRRGVHLSLELRPVMA 443 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167 S + ++ L + + G + ++ + + ++ + A +I Sbjct: 444 SVDPDQLRQVLLNLLRNAFEAVGPEGRTRVSLSVSAEQKVLLAVWDS-AGAIPEAHLVRI 502 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ RL + L Sbjct: 503 FEPFFTTRSGGTGLGLATAYSIVRAHEGRLQVTSSPGSGTEFTVELP 549 >gi|56962996|ref|YP_174723.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56909235|dbj|BAD63762.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 539 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 67/221 (30%), Gaps = 9/221 (4%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55 + ++ L L + I H+I +P+ ++ ++L + + ++ + Sbjct: 318 ETEEKLRTTEKLAVVGELAAGIAHEIRNPLTSLRGFVQLFQDESKENNPLHRIMLDELER 377 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + A L R + LGD+ Q++ ++ E + L + Sbjct: 378 INTIASELLVLSRPQEVAFQRCNLRQVLGDVIQLMGTNSQLNGATLSLQAEEGLSLECDP 437 Query: 116 AKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ V + G + S + +++ NG ++ ++ + Sbjct: 438 NQLKQLFINVVKNAAESGASAIVVRAFPSGTQICVAVEDNGCGI-SADRIERLGEPFYSQ 496 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + L K Sbjct: 497 KERGTGLGLTISHKIVEAHHGAIQYKSELGTGTTVFIALPK 537 >gi|228984509|ref|ZP_04144686.1| hypothetical protein bthur0001_12140 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775212|gb|EEM23601.1| hypothetical protein bthur0001_12140 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 486 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TISV ++ + + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNATHSQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGQIFINSIENEGTTVHIEIP 482 >gi|319652787|ref|ZP_08006894.1| hypothetical protein HMPREF1013_03509 [Bacillus sp. 2_A_57_CT2] gi|317395514|gb|EFV76245.1| hypothetical protein HMPREF1013_03509 [Bacillus sp. 2_A_57_CT2] Length = 419 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 64/224 (28%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + S L + + I H+I +P+ +I ++L +DE ++ Sbjct: 178 EEQEKLLQKSEKLALLGQMAAGIAHEIRNPLTSIKGFVQLFKSNSQKDEYFDIVLSELDR 237 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDL 111 + + T + L + + + + Sbjct: 238 INGIVGEFLVLAKPTADIFEKQDLTKLINEVILLSSTQSVLNNVEIAAENNLHAPMIHCE 297 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ LN+ A ++P GG++ I V N G ++ + + + Sbjct: 298 KNQLKQVFLNIIKNAIEAMPGGGELNIKVFKKSGNTISIQFIDQGVGI-SEDRISSLGEP 356 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + RL+ E + L Sbjct: 357 FYTTKEKGTGLGLMICYKIIENHNGRLIVESKVGEGTKIEIELP 400 >gi|302039538|ref|YP_003799860.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300607602|emb|CBK43935.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 465 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 71/236 (30%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVM 50 +A + + L AL L + + H++ +P+ AI +L LL+E E + Sbjct: 219 LALERRVRV-AEKLAALHTLSAGVAHELRNPLSAIDLNLHLLEEEFKEQGGPAKQAAYYL 277 Query: 51 QLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWT 105 +++ + +KF R +VD + I ++ + +++ + Sbjct: 278 RVLNAECRRLSVILDNFMKFARPGSMGLHAVDLPALIEHIVALMRFEAEERKIQLEQRVS 337 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLA 158 + + + +I L + + ++ + G Sbjct: 338 KDMSPVLGDETQISQVLVNIVVNAFHAMPNGGRCSIATEERTEEGKRWVEIVVSDTGIGI 397 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + ++ + + + + Sbjct: 398 EQEDLP-RLFEPFYTTKSGGTGLGLAIAYRIMQDHSGTIHVTSVPGNGTQVVMQFP 452 >gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 456 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 68/223 (30%), Gaps = 24/223 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L I++ + +I S + Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQTRDKFLDIIDFESERLTRLIND 284 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114 + T ++ + DI +++ + ++ Sbjct: 285 ILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVINTNKDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V +S ++ ++ I ++ NG E ++ + Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVEDNGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + V + K + E Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 446 >gi|322376760|ref|ZP_08051253.1| sensory box histidine kinase VicK [Streptococcus sp. M334] gi|321282567|gb|EFX59574.1| sensory box histidine kinase VicK [Streptococcus sp. M334] Length = 449 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +Q+ + + + + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T++++ + ++ I S+ G + +I D Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|309800487|ref|ZP_07694641.1| sensor protein YycG [Streptococcus infantis SK1302] gi|308115882|gb|EFO53404.1| sensor protein YycG [Streptococcus infantis SK1302] Length = 449 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALTEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117 + + LI I + + + + + + Sbjct: 271 IDNETSHLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172 ++ N+ A P GGK+T+S++ + ++ I S+ G + F + Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSISDQGLGIPKQDLPKIFDRFYRVDRAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|307704959|ref|ZP_07641847.1| two-component sensor histidine kinase [Streptococcus mitis SK597] gi|307621469|gb|EFO00518.1| two-component sensor histidine kinase [Streptococcus mitis SK597] Length = 449 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +Q+ + + + + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T++++ + ++ I S+ G + +I D Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|261408910|ref|YP_003245151.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. Y412MC10] gi|329927108|ref|ZP_08281464.1| putative sporulation kinase E [Paenibacillus sp. HGF5] gi|261285373|gb|ACX67344.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. Y412MC10] gi|328938685|gb|EGG35064.1| putative sporulation kinase E [Paenibacillus sp. HGF5] Length = 374 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 17/226 (7%), Positives = 57/226 (25%), Gaps = 21/226 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 + L L + + I H+I +P+ +I ++LL + + R+ + Sbjct: 144 QNDKLAMLGKISASIAHEIRNPLTSIRGFIQLLRPHLVSLGKDEYARIILTEIDRANDII 203 Query: 68 RLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLS----RER 115 + + + + + + ++ + ++ Sbjct: 204 YEFLNSSKPSAPETKIVSVSSLLKEVVLLTESEALMKGCQINLHTDKTPPAFISVDVKQI 263 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEKFTQIVD 169 +++LN+ A ++ I+ + NG + + Sbjct: 264 KQVILNIIKNALDAINEHHDENITGMIDISARDTGKHINICISDNGGGMDQNTLN-HLFN 322 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + K Sbjct: 323 PFFTTKESGTGLGLSVSYSIIRNHGGTIAVDSQVGAGTEFVITFPK 368 >gi|239906256|ref|YP_002952996.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796121|dbj|BAH75110.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 609 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + ++ + S L L + + H I +P+ ++ L L+ + E ++I Sbjct: 368 LEQSRDHLMQSEKLAMAGKLAAGVAHTIRNPLTSVKMRLFSLERGLKLDASQQEDFEVIA 427 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 ++ V + L + + + D V V + Sbjct: 428 EEIGHIDTIVRNFLEFARPPKLVAQPVSLSAVVDTTLTLLRHRLESYDVSVTVERSRRLP 487 Query: 110 DLSRERAKILLNLFM---VAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFP 161 ++S + ++ L A ++ + T ++ + +G P Sbjct: 488 EISADPDQLKEALVNLVLNACEAMVEGGSIVIREETGVIEPYGRVVALRVSDDGPGIPPP 547 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + E+ + + + + Sbjct: 548 -LIDRVFQPFFTTKGEGSGLGLAIVRRIVEEHGGWITVMSPETRGTTFTMVFP 599 >gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 585 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 72/220 (32%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + ++D + +I S ++ + Sbjct: 362 FVANVSHELKTPITSIKGFAETLLDGAMKDERTLEHFLSIIWKESERLQTLVQDLLDLSK 421 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLN 121 + + +VD L +I + + D R+ + + + +I +N Sbjct: 422 IEQQEFQLHMETVDLTHLLHEIAIMFQRKAEEKGIDFRMHAAKSIYMEGDANRLKQIFIN 481 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A P+GG+V + ++ + E + +K G E +I + Sbjct: 482 LITNALTYTPKGGQVEVIAEEQEEETLVHVKDTGIGIEEAEIP-RIFERFYRVDKARSRH 540 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + K Sbjct: 541 SGGTGLGLAIVKHLVEAHHGHITVKSAVGKGTTFTVHFPK 580 >gi|302341478|ref|YP_003806007.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638091|gb|ADK83413.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 482 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + +N + + L +L L S + H++ +P+ I S ++L E ++ + R Sbjct: 246 LRQNNEQMIQTEKLTSLGTLTSGVAHELNNPLNNISTSTQILLEELDSPDLQEYHRELLA 305 Query: 55 -------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105 + L+F R D + + ++I+ I +V+V Sbjct: 306 AIEQQVAKAKDIVGSLLEFARQREFEPSRHDLRAVIDETLKLIKGEIPAQVQVEVDAPAG 365 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164 + L+NL + A ++ G+++I + L +G+ PE Sbjct: 366 IVMDMDKAHIVQALINLIINAIQAMDGAGRLSILARLAEGETVRLELTDSGSGI-APEVL 424 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ + E L Sbjct: 425 PRIFDPFFTTKEVGRGTGLGLSITYGIIERHRGHIQAESRPGQGARFIITLP 476 >gi|251800001|ref|YP_003014732.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247547627|gb|ACT04646.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 663 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 +++ + ++ L + + H+I +P+ A+ +LL ++ Sbjct: 438 LSEQHLIRSEKLSVIGQLAAGVAHEIRNPLTALKGFTQLLHRRTTDQNRHYFDMMLTELE 497 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTGEKI 109 + L I + + Sbjct: 498 RINYIVGEFMLLSKPHQWQQISSCDMSSLLDDIIPIMQSQAIITNVSISAEKSQDLPIVQ 557 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + ++L+NL A ++P GG++ +D K + + G ++ Sbjct: 558 CDANQIKQVLVNLMKNAIEAMPSGGELHVHMKKDHKGYMVIDIIDQGVGI-PQHVIDRLG 616 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + + L Sbjct: 617 EPFYTTKDTGTGLGLTVCFKIIQSHGGTLSITSEPNIGTTATIRLP 662 >gi|323340910|ref|ZP_08081159.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644] gi|323091572|gb|EFZ34195.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644] Length = 626 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 20/243 (8%), Positives = 66/243 (27%), Gaps = 34/243 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 + S + H++ +P+ ++ + +E L + + +++ + + Sbjct: 373 TEQQKIDRER--RQFVSNVSHELRTPLTSMRSYIEALNDGAWKDPEVAPSFLKVTQDETD 430 Query: 59 SAIIRLKFMR-------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 I + + + L + + + Sbjct: 431 RMIRMINDLLSLSRMDSGTVKLDFELVNLNELFNYILNRFDMMLKKDNNDTRETKSKNYT 490 Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 ++ +T + + + +++ N+ A P GG +T + ++ N I S+ G Sbjct: 491 IKRDFTKRDLWVEIDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNHVILSITDQGL 550 Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + ++ + I+ Sbjct: 551 GIPRKDLGHIFDRFFRVDKARSRAQGGTGLGLAISKEVIEMHHGKIWVDSIEGKGSTFYI 610 Query: 212 LLE 214 L Sbjct: 611 SLP 613 >gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855] gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855] gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 807 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 54/228 (23%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E + Q + + + Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ T + ++ + Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVPAGVELVFEKCLPECH 688 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A G + + F ++ G + T Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPRNKIKTVF 748 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + E + Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796 >gi|315649024|ref|ZP_07902118.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus vortex V453] gi|315275705|gb|EFU39059.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus vortex V453] Length = 373 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 18/226 (7%), Positives = 59/226 (26%), Gaps = 21/226 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 + L L + + I H+I +P+ +I ++LL + + R+ + Sbjct: 143 QNDKLAMLGKISASIAHEIRNPLTSIRGFIQLLRPHLVSLGKDEYARIILTEIDRANDII 202 Query: 68 RLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLS----RER 115 + + + + + + ++ + ++ Sbjct: 203 YEFLNSSKPSAPETKIVSVSSLLKEVVLLTESEALMKGCQINLHTDETPPAYISVDVKQI 262 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPEKFTQIVD 169 +++LN+ A ++ I+ D+ + NG + + Sbjct: 263 KQVILNIIKNALDAINEHHDENITGMIDISARDNGKHIKICISDNGGGMDQNTLN-HLFN 321 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + K Sbjct: 322 PFFTTKESGTGLGLSVSYSIIRNHGGSIAVDSQVGAGTEFVITFPK 367 >gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8] gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8] Length = 491 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIR 54 MA N+ + + + + + HD+ SPI +I LE + + + E Q Sbjct: 242 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVSMKDGDLPPEERQRYV 301 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWT 105 +++ RL + +++ IE V+ + + V Sbjct: 302 TTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 361 Query: 106 GEKIDLSRERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + L NL A P GG+V + + + + E ++ G Sbjct: 362 PDLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNKQGEVCVAVADTGPGI 421 Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + + + + L E V L Sbjct: 422 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTVFRFRL 481 Query: 214 E 214 Sbjct: 482 P 482 >gi|172057001|ref|YP_001813461.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989522|gb|ACB60444.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 856 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 18/222 (8%), Positives = 59/222 (26%), Gaps = 20/222 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR----- 63 + + S + H++ +P+ +I EL+ + + + I + Sbjct: 614 RMKSEFVSTVSHELRTPLASIFGYTELMLAKDLPVDRQQRYLTTIHSETQRLTSLVNDFL 673 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 +D + ++ + + + + + + + Sbjct: 674 DVQRMESSQQQYQFVKLDLRNLIQEVAEFHAGSTSHHQLTLETGDRPLRWIEADEPKMRQ 733 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 + NL A P GG++ + +++ ++ + G Sbjct: 734 LFGNLINNAIKYSPDGGEIELKLEELEDRLRIQIIDEGIGIPQHALPELFSKFYRVDNSD 793 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E + + + L Sbjct: 794 SRKIGGTGLGLAICQEIVRAHDGLIHVESTEGSGSIFTIELP 835 >gi|312882873|ref|ZP_07742605.1| osmolarity sensor protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369392|gb|EFP96912.1| osmolarity sensor protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 434 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 65/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ + + + ++ + + +++ Sbjct: 224 EEDRALLMAGISHDLRTPLTRIRLATEMMSPQDSYLAEGIISDTEECNQIISQFMDYLKP 283 Query: 70 AFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 V+ +I ++ + + + NL + A Sbjct: 284 VCQEAFLAVNLNDIASEIASSEGNYHVEVAVNFSDTLKDIYANPIAIKRAISNLVVNAIR 343 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDIQFYY 185 +T + + S++ NG + + G+ + + Sbjct: 344 YGNGWVSITTGMSADGKQVWVSVEDNGPGIQQDQITKLLEPFTRGDTARGSEGTGLGLAI 403 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V +A+++ + + V L Sbjct: 404 VKRIANQHNGTISVSNRSEGGVRALLRLP 432 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56 ++I + S + H++ +P+ +IH SL +L ++Q+ S Sbjct: 796 RDITERKQVEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSSTSEQGKRLLQIATDS 855 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVS 103 + + + + D + +++ S Sbjct: 856 TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKAGVSLSIHNSNS 915 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + + L NLF A G V + + K++ + +++ G + Sbjct: 916 SSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDTGRGIPEDKL 975 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + D + + ++ ++ + I L Sbjct: 976 ESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGSSFYFTLP 1031 >gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] Length = 361 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 68/223 (30%), Gaps = 24/223 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L I++ + +I S + Sbjct: 130 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQARDKFLDIIDFESERLTRLIND 189 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114 + ++ + DI +++ + ++ Sbjct: 190 ILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVIKTNKDR 249 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V +S ++ ++ I +++ NG E ++ + Sbjct: 250 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIITVEDNGIGI-SKENIPRLFERFYRV 308 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + V + K + E Sbjct: 309 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 351 >gi|158521942|ref|YP_001529812.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510768|gb|ABW67735.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 591 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 27/234 (11%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSA 60 + ++ + + + H++ +P+ +I E L + +++I ++ Sbjct: 357 RMRQLETMRKDFAANVSHELKTPLTSIQGFTETLLAEPSLLDNAHVVRCLEIIANNTKRL 416 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK--- 117 + + + + + + + ++I L + Sbjct: 417 TTIIDDLLKLSEIEHADRQKDFNFQEAPLADVINSAAAICRPDLDSKQIKLESDCPADLA 476 Query: 118 ----------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 L+NL A P +V IS +D E S+ +G +I Sbjct: 477 LPIDPFLLELALVNLVENAVKYSPNNSEVGISAEDKGREVHVSVIDHGTGIAEAHIP-RI 535 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V +A + R+ + + + + Sbjct: 536 FERFYRVDKARSRELGGTGLGLAIVKHVAQIHGGRIEVQSTPGKGSAFTLIFPR 589 >gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] Length = 456 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 68/223 (30%), Gaps = 24/223 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L I++ + +I S + Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQARDKFLDIIDFESERLTRLIND 284 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114 + ++ + DI +++ + ++ Sbjct: 285 ILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVIKTNKDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V +S ++ ++ I +++ NG E ++ + Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIITVEDNGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + V + K + E Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 446 >gi|172056874|ref|YP_001813334.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989395|gb|ACB60317.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 587 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 73/229 (31%), Gaps = 17/229 (7%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 L L +L L + I H+I +P+ + +L+LL +E ++M + Sbjct: 355 SQQQVILHQEKLASLGQLAAGIAHEIRNPLTPVKMALQLLSEEKQNNPDMMNIALSELDR 414 Query: 60 AIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 A + + T ++ + +E++ + +V Sbjct: 415 ANQLIQTMLDLSKNDKTTLAMAQIDMKKMMEKLTFILESKSHPYEVDCKIYTPAHMPPLY 474 Query: 117 -------KILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L N A ++ G + + ++ +F ++ NG + Sbjct: 475 ASENGLLQVLSNCIGNALDAVESKGTDGICHVHLHVYPDQFVFIVQDNGVGMDEYQI-QM 533 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + S I+ + + + + ++ R+ + + + Sbjct: 534 LGQAFNTSKINGNGLGLFMSNQIVRQHNGRIEVDSKMGVGTTVQLFFPR 582 >gi|322375300|ref|ZP_08049813.1| sensory box histidine kinase VicK [Streptococcus sp. C300] gi|321279563|gb|EFX56603.1| sensory box histidine kinase VicK [Streptococcus sp. C300] Length = 449 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + D V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAK 117 + T LI I + + + + + + Sbjct: 271 IDNATTQLDVELINFTAFITFILNRFDKMRAQDQEKKYELVRDYPINSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172 ++ N+ A P GGK+T+S++ + ++ I S+K G + F + Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|319654258|ref|ZP_08008346.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2] gi|317393958|gb|EFV74708.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2] Length = 543 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIR 54 K F L S L V L + + H+I +P+ I L+L + ++ I Sbjct: 316 KKAEEFLLQSEKLSIVGELAAGVAHEIRNPLTTIKGFLQLYKSGNSQINALLLSELERIE 375 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113 + + K + D + ++ + + ++ Sbjct: 376 NITTEMLSLGKPQAIQMDTAKLTDIIENTVELLSPQANMNGIQFKLNFADGDFLISCEKN 435 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ LN+ A ++ +GG + IS +++ E I S + G ++ + Sbjct: 436 QIKQVFLNILKNAMEAMEKGGDIEISLKDNNEGECIVSFQDQGCGIPDEFLP-RLGEPFY 494 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ ++ + ++ L Sbjct: 495 TLKEKGTGLGLMICHKIIKQHHGSIVYKSKIGEGTLIEITLP 536 >gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] Length = 612 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 KN S + H++ +P+ ++ +E L++ ++ + + +I+ Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420 Query: 57 SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + I + + L + + +R+ Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ N+ A P GG +TI + + I S+ G Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRK 540 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + ++ + + + + Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|149182578|ref|ZP_01861049.1| KinA [Bacillus sp. SG-1] gi|148849714|gb|EDL63893.1| KinA [Bacillus sp. SG-1] Length = 351 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLS 56 K+ S L L S + H+I +P+ A+ L+L+ + + +Q + Sbjct: 119 KKHEEMLRQSEKLALIGELSSGMVHEIRNPLTAMKGFLQLMKSHPKPEYIDIVLQELGQI 178 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDL 111 A L F + A + L + ++ + + I VD ++ E I Sbjct: 179 EEIANELLHFSKPAEHPLTRQNILDIVREVIHFSSVELFKRHIKVDFILEDERDIEIIGC 238 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++LLN+ + ++ G++ + + + NG ++ + Sbjct: 239 KTQLKQVLLNIIKNSIDAITTDGRIKVQISKDDKNVYIYICDNGVGIPKHHLN-RVGNSY 297 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + E ++ + L Sbjct: 298 FTSKEEGTGLGMMVSFNIIKNHNGSIKFESEENQGTSFTITLP 340 >gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20517579|gb|AAM25693.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 469 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA+ + D+ + + H++ SPI +I ++ + + + +++++ Sbjct: 236 MARELA---QLEDMRKEFVANVSHELRSPITSIQGYIDGILDGTIPKEKTYDYLKVVQEE 292 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107 + + + D + + + D V+V + + Sbjct: 293 TRRMSRLINDLLEMTKLESGEFPLNRTEFDINELIRICIIKFEKRIVEKDLTVKVDFEED 352 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + +R ++L NL A G + + + ++ ++K NG + Sbjct: 353 RRFVFADRDKIEQVLTNLIDNAIKFSKPKGIIHLFTEVKGDKVFITVKDNGIGISPEDLE 412 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + Y V + +K + E + L Sbjct: 413 HIWERFYKADKSRGKDGAGLGLYIVKKIIEAHKEEIWAESELKKGTSFTFTLP 465 >gi|330828767|ref|YP_004391719.1| sensory box sensor histidine kinase AtoS [Aeromonas veronii B565] gi|328803903|gb|AEB49102.1| Sensory box sensor histidine kinase AtoS [Aeromonas veronii B565] Length = 700 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + L S L AL L + + H+I +P+ I ++EL+ E + L+ Sbjct: 436 LTEARQQLLISEKLAALGELSAGVAHEINNPLAVILGNVELMKLELGEAAEPVSEELALV 495 Query: 54 RLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + ++ + + V+ Sbjct: 496 LAQIERIRAITRSLLQYSRPGDYETAPVWQHLNPIIEESLTLVRSALRQQQVELVADLRA 555 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---------FSLKINGNLA 158 + + +R ++L L + + G+ +S++ + NG+ Sbjct: 556 QQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWVDELGQLRGAEVRVIDNGSGI 615 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + + LL + + L Sbjct: 616 EAA-IIDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVDSTPGQGSCFTVRL 669 >gi|218289376|ref|ZP_03493610.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218240482|gb|EED07663.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 527 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 23/221 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIR----------- 63 + H++ +P+ A+ LE+L + G ++E + ++ A Sbjct: 298 QFVADASHELRTPLTALSGYLEVLQKGGDFTDEEWREALQQMHGEARRLAGLVDQMLRLA 357 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKIL 119 A V + ++ + + + ++ ++L Sbjct: 358 RAEDVRASWAGDKRERVRLGTLVMSLDALWRGLCGSRELTYRIEGDPAVFADPDALKQVL 417 Query: 120 LNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VE 173 NL A P G ISV E ++ NG P F + + Sbjct: 418 FNLVQNAVQHTPEEGGEIAISVWTDGCEAKLAVADNGTGIPKVHQPHVFERFYRVDEARS 477 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E V + L Sbjct: 478 RAKGGAGLGLAICKAIVEAHGGRIACESEPGEGAVFTVTLP 518 >gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 614 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 21/223 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66 DL + L S + H++ +P+ +I ++LL + + E + +I +S Sbjct: 389 DLKSELISIVSHELRTPLTSILGYIQLLKDETAGKLNEKQKEFVSVISENSERLKRITDN 448 Query: 67 MRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA 116 M G ++ + +I ++ F + + + Sbjct: 449 MSDLVSVDDDVLDGEFNKLNIKNAVEEIISSLQHFADSRNIILLEDVDDSYIKGDKSKIH 508 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 ++L NL A + KVT++ + + G F + + Sbjct: 509 QVLANLIENAVKFSKKQTKVTVTGFEDNGNIHLEITDQGPGIPKEHLDKIFDRFYQIDSS 568 Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E ++ L Sbjct: 569 SKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIVHVLFP 611 >gi|115374056|ref|ZP_01461345.1| alkaline phosphatase synthesis sensor protein PhoR [Stigmatella aurantiaca DW4/3-1] gi|310819376|ref|YP_003951734.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115368946|gb|EAU67892.1| alkaline phosphatase synthesis sensor protein PhoR [Stigmatella aurantiaca DW4/3-1] gi|309392448|gb|ADO69907.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 506 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 26/233 (11%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59 LS + S + H++ +P+ +I +E L + EV+QL+ + Sbjct: 273 REAKLSRLK--TDFVSLVSHELRTPLTSIRMFIETLALGRLKDPAQTQEVLQLLSRETER 330 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKID 110 ++ + + D R ++V Sbjct: 331 LSALIERVLDWARLESGRKEYQREPTAVADVVDTAVAAFRAQRLDGGVELKVDVPSGLPQ 390 Query: 111 LSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R + LNL A+ + ++ +SV+ + S++ NG ++ +I Sbjct: 391 VEVDRHAVAGALLNLLQNAYKYSGQDKRIALSVRADRRWVALSVEDNGVGIAPRDR-QRI 449 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + R+ + + + L Sbjct: 450 FERFYRVDNLLTRKTEGSGLGLAITKRIIEAHGGRISVQSKLGKGSLFTLQLP 502 >gi|317127618|ref|YP_004093900.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315472566|gb|ADU29169.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 423 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 73/227 (32%), Gaps = 14/227 (6%) Query: 1 MAKNICFNL--SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 M + + M+LV+ L S I H++ +P+ + L+LL + ++E ++L Sbjct: 184 MRETRMLKIRTEKMELVSQLASSISHEVRNPLTVVRGFLQLLQQVELPKKKKEEYVKLAI 243 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 A + + + + + + + ++ ++ I Sbjct: 244 SEIDRAESIIGDYLTFAKPSKEKEEFLNTKEELERALEVIKPLANMNSVAIETAFHPCWI 303 Query: 110 DLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ + LLN+ ++P GG + I N+ + + NG E+ ++ Sbjct: 304 RGDKQLFQQCLLNITKNCIEAMPNGGTLRIHTHFDGNKVVIHVSDNGIGM-TEEQQRRLG 362 Query: 169 DGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 363 EPYYTTKGKKGTGLGMMVAFRIIENFNGSISVSSELHKGTTFTLCLP 409 >gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 592 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLK 65 + + + H++ +P+ I E L + +++I S + Sbjct: 362 EKIRRDFVANVSHELRTPVTVIKGYAETLLSGALASDPERAVRFVEIIHSHSERLTSLIG 421 Query: 66 FMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSR 113 + + + + + G + + ++ I Sbjct: 422 DLLTLSELESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPILGDRG 481 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 ++L+NL A P G +T+ D + S+ G + +I + Sbjct: 482 RLEQVLINLLDNAIKYTPEKGTITVKAADEEKMLKISVTDTGMGIPPKDLP-RIFERFYR 540 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + L E S L+K Sbjct: 541 VDEARSREQGGTGLGLSIVKHIVQAHGGALSVESTVGKGSTFSFTLKK 588 >gi|120601883|ref|YP_966283.1| histidine kinase [Desulfovibrio vulgaris DP4] gi|120562112|gb|ABM27856.1| histidine kinase [Desulfovibrio vulgaris DP4] Length = 418 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 75/263 (28%), Gaps = 50/263 (19%) Query: 1 MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE-------------- 42 + K + + +L + + H++ +P+ AI+ E +L Sbjct: 153 LQKEFQAKFHQAEKMATVGMLAAGVAHEVNNPLTAINGFAEGILRRVERLRGSVDPDLHA 212 Query: 43 --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 ++ R L F R V+ + + D +++ + + K Sbjct: 213 DLADYAGTILGECRRCQEIVHSLLTFSRPHSSAFSPVNLNVVVDDTLKLLHNHLKQPKYR 272 Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLP--------------------RG 133 V + +++LNL + A +L + Sbjct: 273 HVRIDTRLCPTAPVILGCEAQLKQVMLNLLVNALDALEAVAPSAGDSGDDAPPDAHGGKT 332 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191 +T++ + F+++ G+ E + + + I + Sbjct: 333 AVITVAPFRDERHAGFTVRDTGSGI-PQEHLHSLFEPFFTTKPVGRGIGIGLSTCYTIVT 391 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 E+ + E + V + L Sbjct: 392 EHGGDISVESKEGEGSVFTVTLP 414 >gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] Length = 587 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 72/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + + D+ + +I S ++ + Sbjct: 365 FVANVSHELKTPITSIKGFSETLLDGAMHDQAALSAFLDIILKESDRLQSLIQDLLDLSK 424 Query: 68 ---RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120 + +D LG+ + ++ S + + ++ + Sbjct: 425 TEQQGFRLSVQEMDLSSLLGECLAILNGKAKDKAIDIEYSDQSGNGWIKGDPHRLKQVFI 484 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P+GGK+++S+++ +++ +K G E +I + Sbjct: 485 NLLTNAITYTPQGGKISVSLEEKEDKVQVEVKDTGMGIDQDEIP-RIFERFYRIDKARSR 543 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L +K + E L + Sbjct: 544 NSGGTGLGLAIVKHLVEAHKGSITVESEVGKGTTFKVQLHR 584 >gi|237734078|ref|ZP_04564559.1| integral membrane sensor signal transduction histidine kinase [Mollicutes bacterium D7] gi|229382904|gb|EEO32995.1| integral membrane sensor signal transduction histidine kinase [Coprobacillus sp. D7] Length = 524 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 22/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 NI ++M + S + H++ +P+ +I ELL+ + + + I Sbjct: 288 NITEQHNAMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVINDKDASKKALDKIHDEVN 347 Query: 59 SAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + + D QV D + ++ Sbjct: 348 NMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKHLQVDKELE-DIT 406 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + ++L NL A GGK+ I I + G + F Sbjct: 407 YTSNHQHMHQLLSNLITNAIKYNVDGGKIIIKSYQFGRNIIIEVSDTGRGISKIDQGRVF 466 Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + L Sbjct: 467 ERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTFKVTLP 518 >gi|167756094|ref|ZP_02428221.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402] gi|167704086|gb|EDS18665.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402] Length = 565 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 22/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 NI ++M + S + H++ +P+ +I ELL+ + + + I Sbjct: 329 NITEQHNAMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVINDKDASKKALDKIHDEVN 388 Query: 59 SAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + + D QV D + ++ Sbjct: 389 NMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKHLQVDKELE-DIT 447 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + ++L NL A GGK+ I I + G + F Sbjct: 448 YTSNHQHMHQLLSNLITNAIKYNVDGGKIIIKSYQFGRNIIIEVSDTGRGISKIDQGRVF 507 Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + L Sbjct: 508 ERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTFKVTLP 559 >gi|167037241|ref|YP_001664819.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115660|ref|YP_004185819.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856075|gb|ABY94483.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928751|gb|ADV79436.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 456 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 68/223 (30%), Gaps = 24/223 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L I++ + +I S + Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQARDKFLDIIDFESERLTRLIND 284 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114 + ++ + DI +++ + ++ Sbjct: 285 ILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVIKTNKDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V +S ++ ++ I +++ NG E ++ + Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIVTVEDNGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + V + K + E Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 446 >gi|222524324|ref|YP_002568795.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|222448203|gb|ACM52469.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 482 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 76/234 (32%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + L S L A+ L + + H+I +P+ A NSL L+++ + + + + Sbjct: 243 LNAAQAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQ 302 Query: 55 LSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + MR + + + L + + + Sbjct: 303 QELGRIARIITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLP 362 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARF 160 + + ++ LN+ + A ++P GG++T+ ++ ++ G Sbjct: 363 AITAHADQLRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGI-A 421 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + + + + + ++ R+L + + LL Sbjct: 422 PEHLPHLFEPFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 475 >gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] Length = 806 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 19/227 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ +I LL E +E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNSIVGFSSLLAETDDREERQEYIKIVETNNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107 + +D I + +E + + Sbjct: 638 LLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSMEMKVPETVDLVFEKYMPDCH 697 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A +G Q + +E F ++ G EK I Sbjct: 698 IYTDKNRFMQVITNFINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGFGI-PKEKIDSI 756 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + V + + + L + ++ E + Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSLVSQMGGKIGVESTEGEGSCFWFT 803 >gi|189424232|ref|YP_001951409.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189420491|gb|ACD94889.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 551 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51 K + L A+ L + + H++ +P+G+I LL + + + Sbjct: 315 KKQQELYHRTEKLSAIGQLSAGVAHELNTPLGSILGYARLLLKQENLTQQQREQLAVIAE 374 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRV---QVSWT 105 + S L F R A + D + + ++ ++ K + + Sbjct: 375 QAKKSGTIIQALLNFSRHAQPTQCRLDACDLNSVIKNALCLLTTELSKRKIILTTDLELI 434 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +++LNL M A ++ G++ I V+ ++ +G E + Sbjct: 435 PKVCADPWGIEQVVLNLVMNALQAIGSQGEIRIIVRRQPEGVRLEVQDSGPGI-PDEVRS 493 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + +EN + D +L Sbjct: 494 RIFDPFFTTKPFGEGTGLGLSICAGIVNENGGNIDIVKSDSRGTTFVVILP 544 >gi|147676371|ref|YP_001210586.1| membrane-associated sensory histidine kinase [Pelotomaculum thermopropionicum SI] gi|146272468|dbj|BAF58217.1| hypothetical membrane-associated sensory histidine kinase [Pelotomaculum thermopropionicum SI] Length = 478 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 19/211 (9%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 H++ +P+ +IH LE+L ++ + S + + L + Sbjct: 267 SHELRTPLTSIHGFLEVLLRGAASQPDQLQKALKSMHSESERLTRLVHDLLLLAKLDRTP 326 Query: 78 DSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 + L Q+ + +Q+ + +++LNLF A Sbjct: 327 QVELAEGLLSTMILDMEPQLRILAGNRELSLQIEPGVVCRYDVNKMKQVILNLFHNAVQH 386 Query: 130 LPRGG-KVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVES--TIDSHDIQF 183 G + +S+ S++ NG P F + +V + Sbjct: 387 TDPEGGCIRLSLSRVDGGVRLSVQDNGPGIGEEYLPHIFDRFYRIDVSRARKYGGSGLGL 446 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E L Sbjct: 447 AITKAIVDIHGGVISVESKPGEGCTFHIWLP 477 >gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora sp. 8437] Length = 585 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 65/226 (28%), Gaps = 23/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ ++ E L ++ + E +++I+ S+ + Sbjct: 361 EKMRTEFVANVSHELKTPVTSLRGFAETLLDGAAEDPDMRKEFLEIIQAESLRLERLIAD 420 Query: 67 MRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + L + + RV+ Sbjct: 421 LLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEEFPVQVDPDRF 480 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A P GG+V +S + + + G + +I + Sbjct: 481 SQILLNLLSNAMTYTPAGGEVILSAGRGETDWWIRVADTGIGIPGEDLP-RIFERFYRVD 539 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + ++ + Sbjct: 540 KARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFPR 585 >gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 525 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 19/228 (8%) Query: 5 ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 I + + + + + + + H+I +P+ AI +L+ E E E Q + ++ Sbjct: 296 IAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEADDEYEKRQYADIVEHNSS 355 Query: 62 IRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L + D + L ++ +V Sbjct: 356 VLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELYVKSVKPEVRLMLDEVDPQLC 415 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++IL+NL A G + Q+ + F + G T Sbjct: 416 IQGDWERISQILVNLITNAIKFTSAGE-IHFGFQEKADMVQFYVSDTGKGIPAERVATIF 474 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +L + R+ V L Sbjct: 475 QRFGKIDDFVQGTGLGLTICRMLVEKMGGRIWVRSKQGKGTVFYFTLP 522 >gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a] gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a] Length = 612 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 KN S + H++ +P+ ++ +E L++ ++ + + +I+ Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420 Query: 57 SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + I + + L + + +R+ Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ N+ A P GG +TI + + I S+ G Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRK 540 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + ++ + + + + Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 522 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 19/228 (8%) Query: 5 ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 I + + + + + + + H+I +P+ AI +L+ E E E Q + ++ Sbjct: 293 IAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEADDEYEKRQYADIVEHNSS 352 Query: 62 IRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L + D + L ++ +V Sbjct: 353 VLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELYVKSVKPEVRLMLDEVDPQLC 412 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++IL+NL A G + Q+ + F + G T Sbjct: 413 IQGDWERISQILVNLITNAIKFTSAGE-IHFGFQEKADMVQFYVSDTGKGIPAERVATIF 471 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +L + R+ V L Sbjct: 472 QRFGKIDDFVQGTGLGLTICRMLVEKMGGRIWVRSKQGKGTVFYFTLP 519 >gi|162453443|ref|YP_001615810.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164025|emb|CAN95330.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 511 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 + + L A+ L + + HD+ +P+GA+ N+ L + + Sbjct: 261 LRDAQEARMRMEKLAAVGQLAASVGHDLRNPLGAVRNANHYLKKRILGTDLGAEPRVAQF 320 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + +I + + + + L + + + RV+V Sbjct: 321 LSIIEKELAACAKIISNLLDFARERRPRFAACALRPLVDDAISVVEIPPRVRVDNDVPDT 380 Query: 110 -----DLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162 + ++L+NL A ++P + + + + + + S+ +G E Sbjct: 381 LPVVEIDKDQFRQVLVNLIQNAAEAIPAEREGRVRIAAERTGDGVTLSVVDDGTGI-SEE 439 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + + L Sbjct: 440 TLARIFEPLFSTKLKGTGLGLAISAGIVERHGGTIEATSALGSGTTFVVRLP 491 >gi|158339280|ref|YP_001520457.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158309521|gb|ABW31138.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 487 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 60/207 (28%), Gaps = 15/207 (7%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ +PI I LE L + E + LI + + L + Sbjct: 261 VSHELRTPITVIQGQLETLAYRPEKQPETISLITNELQQMNRLVNDLLLLTKAECPDFLI 320 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTG--------EKIDLSRERAKILLNLFMVAHASLPR 132 + D++ + E+ + + + ++ ++NL A Sbjct: 321 MKPEDLDWLTEELYLKARSLTSDRDWRLEAKGLYPATIDQQRFSQAVMNLVQNALRHTQP 380 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYYVI 187 G + + + F ++ G ++ +I + + + V Sbjct: 381 GDVIALGSAVDGDSLRFWVRDTGEGIALADQT-RIFERFAQATTNNRPFEGAGLGLAIVS 439 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ + +L Sbjct: 440 KIVQAHGGRIELWSELGQGATFTLILP 466 >gi|157692071|ref|YP_001486533.1| sporulation sensor histidine kinase A [Bacillus pumilus SAFR-032] gi|157680829|gb|ABV61973.1| sporulation sensor histidine kinase A [Bacillus pumilus SAFR-032] Length = 609 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53 + L S L L + I H+I +P+ AI L+L+ + E +L Sbjct: 384 KQTEELMLRSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLIKPKTKDRDQYFEIVFSELS 443 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKI 109 R+ + + + + ++D + ++ ++E ++ + + Sbjct: 444 RIEIILSELLMLAKPQQTASMQTLDLKKIISEVTALLETQANLNGILMNTSEIEEGLLMN 503 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL A S+P GGKV I+ + ++ +++ G +I + Sbjct: 504 GDQNQLKQVFINLIKNAVESMPDGGKVDITAKAERDGIHVTIRDEGIGI-PEAVMKRIGE 562 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + Sbjct: 563 PFLTTKEKGTGLGLMVTFNILENHNGTIRVDSHPEKGTAFHIMFP 607 >gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510] gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510] Length = 807 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E + Q + + + Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + D + +I + + + + Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 688 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ +++ N A G + + F ++ G + T Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 748 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + E + Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796 >gi|253700682|ref|YP_003021871.1| histidine kinase [Geobacter sp. M21] gi|251775532|gb|ACT18113.1| histidine kinase [Geobacter sp. M21] Length = 412 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + L + + + H+I +P+ I +++ + E + Sbjct: 186 MTRKGNLA----KL-GEMGALLAHEIRNPLAGIKGFAQVIAKKPQEARNGAFAENIVIEV 240 Query: 61 IIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKID 110 + + D + ++ A + + + Sbjct: 241 VRLETLVNDLLAYAAGDGAQPARFDLGQLIDHALSLLAPEAAERAVAVSCSSTGSLFVMG 300 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + LLNL A ++ GG + I+ + E S+K G + ++ + Sbjct: 301 NRDRIEQALLNLGKNALQAMGAGGVLEIACATAGGEARISIKDTGQGIAEADLP-KVFEP 359 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ + E ++ L Sbjct: 360 FFTTKARGTGLGLALCRKVIEEHGGTISLESRVGEGTTVTFALP 403 >gi|251799114|ref|YP_003013845.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247546740|gb|ACT03759.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 549 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 13/223 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58 + ++ + + L+ + + I H+I +P+ I ++L+ E + ++ Sbjct: 321 LLRSEVGRMERLSLIGQMAASITHEIRNPMAVIRGFVQLMRERSPENQQAYYGIVMDELD 380 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKID 110 A + L DI + + + D ++ + Sbjct: 381 RANTIISDFLSLAQNRALTMEAGSLHDIIREMVPLLNADANLRGQTIEVELCDFVPAIQL 440 Query: 111 LSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +E ++LLNL ++ G+ + S K E + ++ G E+ +I Sbjct: 441 NEKEIKQLLLNLARNGMEAMSEKGRLSIHTSYIVEKEEIVLRIQDQGVGI-SDEQKQRIF 499 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 D + + + +A + R+ E Sbjct: 500 DPFFSTKTQGTGLGLPLCVSIAERHNGRINVESEQGVGTTFIV 542 >gi|78221775|ref|YP_383522.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193030|gb|ABB30797.1| histidine kinase [Geobacter metallireducens GS-15] Length = 499 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 20/224 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63 + L ++ + + I H+I +P+ I ++ ++ + E++ + Sbjct: 264 RADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFSDEDPRKEIIGEVVEQVSRLDKT 323 Query: 64 LKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + T L Q E ++ Sbjct: 324 VNDLLFFGKPTPPEPTYADVNAILRKTLLFALQHKGGKNIAKSLDLADGLPEIFVDPKQV 383 Query: 116 AKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ LNL + A ++ G D K ++ G +I Sbjct: 384 QQVFLNLILNAIQAMQADGGTLTVGSSLVDLDGKGWVRTTIADTGPGI-PEPIIGKIFTP 442 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ L D V + L Sbjct: 443 FFTTKAQGTGLGLAICHKLITQHGGTLSVTSEDGKGTVFTIDLP 486 >gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 456 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 24/221 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I +E L + D+ + +I S + Sbjct: 225 EKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARDKFLDIIDFESERLTRLIND 284 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRE 114 + T + + DI +++ + Sbjct: 285 ILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGLVINTNKDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V +S ++ ++ I +K NG E ++ + Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVKDNGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + V + K + E Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKF 444 >gi|206977534|ref|ZP_03238428.1| sensor histidine kinase KinD [Bacillus cereus H3081.97] gi|206744252|gb|EDZ55665.1| sensor histidine kinase KinD [Bacillus cereus H3081.97] Length = 486 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 380 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V ++K + G + Sbjct: 381 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNKTHAQLQIIDTGKGI-PKHIQKHLFHPF 439 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I++ + + Sbjct: 440 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 482 >gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 807 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E + Q + + + Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + D + +I + + + + Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 688 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ +++ N A G + + F ++ G + T Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 748 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + E + Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796 >gi|322385036|ref|ZP_08058686.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100] gi|321270946|gb|EFX53856.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100] Length = 454 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPEFVKVSLTETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + ++ I + + + Sbjct: 271 IDNNTSHLDVELTNFTAFITYILNRFDKIKNQDETKKYEIIRDYSITPIWVEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GG +T+SV+ + + I S+ G + F + + Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSVRTTDVQLILSISDEGLGIPKQDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLP 432 >gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus OF4] gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus OF4] Length = 607 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 58/220 (26%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLK---FMRL 69 + + H++ +P+ + + LE L++ +++ + + + I + + Sbjct: 380 FVANVSHELRTPLTTMKSYLEALEDGALDEPELARRFVGVTQNETERMIRLVNDLLQLSK 439 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------KILL 120 + + + +++ Sbjct: 440 IDSHDYRLQLTWVDFGQFLHEVIDRFEMVAQGRDIHFTRHISGHPTYVEVDKDKLTQVID 499 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 N+ A P GG +T ++ + S+ G E ++I D Sbjct: 500 NIISNAMKYSPEGGNITTTLMHQGHNVRVSISDEGMGI-PRENQSKIFDRFYRVDKARAR 558 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + L H + + + L Sbjct: 559 SIGGTGLGLAIAKELVHAHGGEIWVSSEYGSGTTIYFTLP 598 >gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297] gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297] Length = 589 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59 + + + + + H++ +P+ I S++L+ + L S Sbjct: 211 RRLADRAQQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEAEQPSPWLNSLAVSSEAL 270 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------T 105 + + +G + D+ Q+I D AV V Sbjct: 271 LTQINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWSSH 330 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +ILLNL A G V + + + + G + Sbjct: 331 CWVMADGHKIRQILLNLLSNAFKFTEHGQIVLAVQKQEDGQFQWRVSDTGIGIPADKLEA 390 Query: 166 QIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + LA L + L Sbjct: 391 IFQSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLP 444 >gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 641 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK M +L + + H+I +P+ AI E++ E E + + + ++ Sbjct: 273 AKRRAEEADRMK--SLFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLGIIQQNSN 330 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + T + + ++ ++ S Sbjct: 331 LLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLKMKKGVELNVIRPSDEIW 390 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L N A + G V++ + F + G + Sbjct: 391 ISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKFYVADTGCGISKEKLPLIF 449 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + + L Sbjct: 450 TRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELEKGSTFTLYLP 497 >gi|294499108|ref|YP_003562808.1| sporulation kinase KinA [Bacillus megaterium QM B1551] gi|294349045|gb|ADE69374.1| sporulation kinase KinA [Bacillus megaterium QM B1551] Length = 574 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 72/222 (32%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + + LV L + I H+I +P+ A+ ++LL E + +++I Sbjct: 351 TEKLLRESAQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIE 410 Query: 62 -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSR 113 K + D L + +V + + ++ + Sbjct: 411 LITDEFLSLAKPQAKTYRDKHVQDILENTLKLAEVQGITEKIHVKKEIDLHLPLVLCEEN 470 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ N+F A S+P GG VTI + ++ + G E+ + Sbjct: 471 QLKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENLVVRFSDEGPGI-TQERMQHLGKPFY 529 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + LL Sbjct: 530 STKEKGTGLGLMVCYKIIREHRGEINFVSELGKGTTVDILLP 571 >gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 637 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 59/220 (26%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + ++ + + H+I +P+ AI E++ + + E +++I+ +S + + Sbjct: 279 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTEGEEEKREYLEIIQRNSNLLLQLIND 338 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + F + + + Q+ K ++ Sbjct: 339 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 398 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 ++L N A + +G + + G + Sbjct: 399 MQVLFNFLSNAIKNTEKGSITLGLKHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKLND 457 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ V + L Sbjct: 458 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSVFALYLP 497 >gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 629 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK M +L + + H+I +P+ AI E++ E E + + + ++ Sbjct: 261 AKRRAEEADRMK--SLFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLGIIQQNSN 318 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + T + + ++ ++ S Sbjct: 319 LLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLKMKKGVELNVIRPSDEIW 378 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L N A + G V++ + F + G + Sbjct: 379 ISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKFYVADTGCGISKEKLPLIF 437 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + + L Sbjct: 438 TRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELEKGSTFTLYLP 485 >gi|167590124|ref|ZP_02382512.1| integral membrane sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 861 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 67/242 (27%), Gaps = 32/242 (13%) Query: 3 KNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + + + D + L + + H+I +P+ I +LELL+ ++ ++ Sbjct: 488 RKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSALDVSQHGRVQTLR 546 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQ 101 SA L + ++ + + IE + I + + Sbjct: 547 TSAGSLLALVNDILDFSKIEAGAMTVESIEFGVMTVIERELSAFAPIAKAKGLQLFCEMD 606 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLA 158 S + A++ NL A +V+I E ++ G Sbjct: 607 ASISQRMRGDPMRFAQVFGNLLNNAIKFTDEGRVTARVSIVDACGAPELAVEVEDTGIGI 666 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 PE ++ + + L R+ + Sbjct: 667 -SPEHQHKLFKAFSQVDASITRRYGGTGLGLALCARLVTAMGGRISVASEPGAGSCFTVR 725 Query: 213 LE 214 L Sbjct: 726 LP 727 >gi|220915566|ref|YP_002490870.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953420|gb|ACL63804.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1527 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 +A + L AL L + + H++ +P+G I NSL +L G ++ ++ Sbjct: 1283 LAHAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRMLRPQGDARMLLDIVG 1342 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R + + + ++Q Sbjct: 1343 EEADRLNRIVGDLLDFARPSTPEVRPEPLDRVVEEALATALAQNGQPIQIQREVDPALPQ 1402 Query: 111 LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + + + VA + +PRGG++T+ ++ + + L+ G E +I Sbjct: 1403 VPMDARLVRQAVVNVAVNAVQAMPRGGRLTVRLRRDGDAAVLELEDTGAGI-PDEVRGRI 1461 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + + Sbjct: 1462 FEPFFTTKASGTGLGLAVVRRIVEGHGGEVTVTSRPGAGTAFALRFP 1508 >gi|197120866|ref|YP_002132817.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170715|gb|ACG71688.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 1527 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 +A + L AL L + + H++ +P+G I NSL +L G ++ ++ Sbjct: 1283 LAHAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRMLRPQGDARMLLDIVG 1342 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R + + + ++Q Sbjct: 1343 EEADRLNRIVGDLLDFARPSTPEVRPEPLDRVVEEALATALAQNGQPIQIQREVDPALPQ 1402 Query: 111 LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + + + VA + +PRGG++T+ ++ + + L+ G E +I Sbjct: 1403 VPMDARLVRQAVVNVAVNAVQAMPRGGRLTVRLRRDGDAAVLELEDTGAGI-PDEVRGRI 1461 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + + Sbjct: 1462 FEPFFTTKASGTGLGLAVVRRIVEGHGGEVTVTSRPGAGTAFALRFP 1508 >gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] Length = 657 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 59/220 (26%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + ++ + + H+I +P+ AI E++ + + E +++I+ +S + + Sbjct: 299 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTEGEEEKREYLEIIQRNSNLLLQLIND 358 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + F + + + Q+ K ++ Sbjct: 359 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 418 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 ++L N A + +G + + G + Sbjct: 419 MQVLFNFLSNAIKNTEKGSITLGLKHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKLND 477 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ V + L Sbjct: 478 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSVFALYLP 517 >gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 488 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 20/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + + H++ +P+ I E L + E + ++ A Sbjct: 260 ANVSHELRTPLTIIQGYTEALLDGIVTDEKIREEHLKNILQEAERLKAMANELLDLASIE 319 Query: 78 D------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM- 124 + + F +++ + + +R+K+L + Sbjct: 320 EGREKLKFEKIDLANFAQDCFNAFKTQFFEKGIELELEVNVQDGKVVGDRSKLLRVVGNL 379 Query: 125 --VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179 A P GGKV V + + + +K +G + F + + + Sbjct: 380 LSNALKFTPAGGKVKFEVIEGEKDYQIHVKDSGPGIPEQDLEKIFERFYKVDKARSSKGF 439 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ + + +L K Sbjct: 440 GLGLAITKSIVEAHGGQIFARNNPEGGAKFTVVLPK 475 >gi|307718246|ref|YP_003873778.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM 6192] gi|306531971|gb|ADN01505.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM 6192] Length = 463 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 22/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 S + H++ +PI + LE L D+ ++ + ++ + Sbjct: 246 FVSSVSHELKTPITTVLGYLETLKDLPPDDEATRTRFLETALSHTHRLHQIIEDLLLLSR 305 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNL 122 A + +++ + + + + L NL Sbjct: 306 IEQAEAPVPLERAPLAPLIRRAVELVRQARGETHPLTLEGPEDLALPLNPGLMVQALYNL 365 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176 A P G V + + + + + ++ G PE +I + Sbjct: 366 IHNALTHTPPGTPVVVRWRSTGSSVLIQVEDRGPGI-PPEALPRIFERFYRVDTSRSRAT 424 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + +K + H + L Sbjct: 425 GGTGLGLSIVKHIVQAHKGTIDVHSTPGHGTTFTIRLP 462 >gi|306825162|ref|ZP_07458504.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432598|gb|EFM35572.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 449 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + D V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + T L +++ + + + + + + Sbjct: 271 IDNATTKLDIELINFTAFITFILNRFDKMRNQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T+S++ + ++ I S+ G + +I D Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|317152724|ref|YP_004120772.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942975|gb|ADU62026.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 565 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIEDEVMQLIR 54 M+K + + + L ++ L + I H+I +P+ + + +LL++ G E Q I+ Sbjct: 320 MSKQM---IEAGKLASIGELAAGIAHEINNPVAIMMEEAGWIGDLLEDEGTEMSCRQEIQ 376 Query: 55 -----------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQV 102 L F R +V + ++ + ++ + Sbjct: 377 RALAQVRTQGVRCKDITHKLLSFARQTDSRVTTVVLPELIEEVVSLSMQQARYAQIDFSL 436 Query: 103 SWTGEKIDL---SRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLA 158 + + E ++ LNL + ++ + G + IS ++NE + S+ G Sbjct: 437 DIDADMPPIEASPTELQQVFLNLINNSIQAMEQDGGTLAISCHQTENEVLISVADTGPGI 496 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + H+ + E H + L Sbjct: 497 PEAYLS-RIFDPFFTTKPVGKGSGLGLSICFGIIHQMGGTIEVESAVGHGTRFNIRLP 553 >gi|42784659|ref|NP_981906.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987] gi|42740591|gb|AAS44514.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987] Length = 613 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + I D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWIDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|306829563|ref|ZP_07462753.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249] gi|304428649|gb|EFM31739.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249] Length = 449 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + D V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117 + T LI I + + + + + + Sbjct: 271 IDNATTQLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172 ++ N+ A P GGK+T+S++ + ++ I S+K G + F + Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|228988692|ref|ZP_04148778.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771143|gb|EEM19623.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 588 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + ++ + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQNPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|257060401|ref|YP_003138289.1| histidine kinase [Cyanothece sp. PCC 8802] gi|256590567|gb|ACV01454.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 507 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 11/203 (5%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +PI I LEL+ D+ + E + L+ + + L Sbjct: 294 HELRTPITIIRGHLELMGDDPQDQQETISLVLDELDRMARLVDDLSLLAKAERPDFLQRE 353 Query: 83 LGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + DI E+ + ++ G+ + + + ++NL A + Sbjct: 354 MIDISDFTEELYLKAIGLKSRHWLLENKAKGQLMIDRQRITQAIMNLAQNASQHTRESDQ 413 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 +TI + + +K G + F + V NV S+ + + V +A Sbjct: 414 ITIGSTEDNHFIRLWVKDTGQGINKQDQQRIFNRFVRLNVRSSSEGSGLGLSIVKAIAEA 473 Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215 + R+ + + +L K Sbjct: 474 HGGRVELISEIGEGSIFTIILPK 496 >gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 820 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E + Q + + + Sbjct: 584 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 641 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + D + +I + + + + Sbjct: 642 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 701 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ +++ N A G + + F ++ G + T Sbjct: 702 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 761 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + E + Sbjct: 762 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 809 >gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1043 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 +++ + S + H++ +P+ +I SL LL + D ++ + + Sbjct: 785 QDVTKRREVDRMKNEFISVVSHELRTPLTSIRGSLGLLAGGALRKDPEKADRMLDIALKN 844 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + +D+ + + +K + + Sbjct: 845 TERLVRLINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRLETHSTRG 904 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + L NL A VTIS Q + ++ G + Sbjct: 905 ILYADRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRRGGGLLIRVRDQGRGIPSNKLQTI 964 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + ++ + + ID LL + Sbjct: 965 FERFQQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSIDGKGSEFFILLPR 1018 >gi|42523019|ref|NP_968399.1| pilS sensor protein [Bdellovibrio bacteriovorus HD100] gi|39575224|emb|CAE79392.1| pilS sensor protein [Bdellovibrio bacteriovorus HD100] Length = 525 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 72/221 (32%), Gaps = 16/221 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRL 64 + L A+ L + I H+I +P+ I S+ELL + + ++M+++ + Sbjct: 304 QNEKLAAVGGLAAGIAHEIRNPLAGISGSIELLTQTVNNDDDRKLMKIVLREIDRLNNLI 363 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------LSRERA 116 + L + + D + ++ +V+ + + Sbjct: 364 TEFLDYARPEVPPTDAVDLSSLLTEVLDSMKLNAQVRADVEQVREYEAGLKILGRRDKLK 423 Query: 117 KILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + LN+ + ++ ++ K I+V+ + E ++ G + ++ + + Sbjct: 424 QAFLNIIINSYQAMNDSQKPQIAVKALVTDKEVRVRIRDAGCGMSEATRK-KMFEPFHTT 482 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ E + Sbjct: 483 KPKGTGLGLAVTHKILEGHGAQVFVESEVGVGTEFILTFPR 523 >gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 785 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + S+ + + + H+I +P+ I ELL++ +++E ++ S Sbjct: 126 LRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSG 185 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 M + V Q + + V + Sbjct: 186 EALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEV 245 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 +IL+NL A +G + F+++ G Sbjct: 246 PRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAWVAFTVEDTGIGIPE 305 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K + + L K + + LL Sbjct: 306 NKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSREGEGSSFWFLLP 364 >gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 417 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 31/239 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M +N+ + S + H++ +P+ +IH E L + + +++I Sbjct: 179 MERNLEL------MRREFVSNVSHELRTPLTSIHGYAETLLEYDLSDEETVRKFLRIIEG 232 Query: 56 SSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S + + + + I + + + V + Sbjct: 233 ESARMTRLINDLLDLEKLEAGDIQLVLEDVELSEVGEYVIKIVSPLAEELGVSIYEDMER 292 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLAR- 159 ++ LNL A V I V + N + ++ G Sbjct: 293 GVFVEGDFDRLVQLTLNLVDNAVKYTSVKEHGPKEVWIRVYTANNYAVLEVEDTGIGIPE 352 Query: 160 --FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V L+A ++ + + + L Sbjct: 353 EARKHIFERFYRVDKARSRKMGGTGLGLAIVKLIAEKHGGTVSLDSEFGNGTTFKVRLP 411 >gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 641 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 71/240 (29%), Gaps = 28/240 (11%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51 A+ + + + L + L + + H++ +P+ +I +EL+ + + + +Q Sbjct: 393 AEELKESYEELKELDNLKSDLIAIVSHELRTPLTSIKGYVELVLDGTMGTINESQRKCLQ 452 Query: 52 LIRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + + ++ M IE + + +++ Sbjct: 453 VADDNIIRLRRLIESMLDLSKIERGELEMYREAMNVKDTVSDVIEYLTPLATEKNIKLKQ 512 Query: 103 SW-TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF 160 ++ NL A P + I ++++N + ++K NG Sbjct: 513 DIKDLLINADKDRITQVFTNLIENAIKFSPANESIMIIGKETENGDVHITVKDNGAGIPK 572 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + + + E +L Sbjct: 573 KDL-EKIFDQFYQVDSSTKRKKGGSGLGLAVCKSIIQAHGGTIWVESELGRGSTFHIVLP 631 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56 +++ + S + H++ +P+ +IH SL +L + ++++ S Sbjct: 1110 RDVTERKQIERMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLSADSEQGKRLLEIATDS 1169 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTG 106 + + + S D + +++ S + Sbjct: 1170 TERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPLANKAGVKLSVSSPSI 1229 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + + L NL A V + Q +E + ++K NG + Sbjct: 1230 QLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQHYGDELLLTVKDNGRGIPADKLDSI 1289 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + D + + ++ R+ E + L Sbjct: 1290 FERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVLGEGSNFYFTLP 1342 >gi|291295488|ref|YP_003506886.1| histidine kinase [Meiothermus ruber DSM 1279] gi|290470447|gb|ADD27866.1| histidine kinase [Meiothermus ruber DSM 1279] Length = 473 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 + K++ LS ++ + H++ +P+ AI + L + E +++ Sbjct: 232 LVKSLNRMLSRLESAWETQGRFLADASHELRTPVTAILGHVNYLLRRTQITEQQRESLEI 291 Query: 53 IRLSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 I+ S + + GSV L +IE+ VQ Sbjct: 292 IKRESERMQKLVGDLLELSKTGGSWKIELGSVHLKTVLNEIEEEYSKSFEGQIEVQAPEH 351 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162 + +++ NL A + ++ + ++ NG P Sbjct: 352 VWVLGDPERLHQVMANLVSNAIKAGATRIRLIALDL--AERVVIRVEDNGEGISKEHLPH 409 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + + + E V S L+K Sbjct: 410 LFERFYRVDKARDRARGGSGLGLAIVRSIVEAHGGHVWAESEPGKGSVFSISLKK 464 >gi|15903149|ref|NP_358699.1| sensory box sensor histidine kinase [Streptococcus pneumoniae R6] gi|116515922|ref|YP_816555.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39] gi|148985121|ref|ZP_01818360.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP3-BS71] gi|148989248|ref|ZP_01820628.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP6-BS73] gi|148998656|ref|ZP_01826095.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP11-BS70] gi|149007116|ref|ZP_01830785.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP18-BS74] gi|149012277|ref|ZP_01833346.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP19-BS75] gi|149019218|ref|ZP_01834580.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP23-BS72] gi|168484878|ref|ZP_02709823.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00] gi|168486548|ref|ZP_02711056.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00] gi|168491147|ref|ZP_02715290.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04] gi|168493148|ref|ZP_02717291.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06] gi|168577195|ref|ZP_02723004.1| sensor protein YycG [Streptococcus pneumoniae MLV-016] gi|169833288|ref|YP_001694657.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6] gi|182684046|ref|YP_001835793.1| sensory box sensor histidine kinase [Streptococcus pneumoniae CGSP14] gi|221231921|ref|YP_002511073.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669] gi|225854692|ref|YP_002736204.1| sensor protein YycG [Streptococcus pneumoniae JJA] gi|225856893|ref|YP_002738404.1| sensor protein YycG [Streptococcus pneumoniae P1031] gi|225859007|ref|YP_002740517.1| sensor protein YycG [Streptococcus pneumoniae 70585] gi|225860940|ref|YP_002742449.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14] gi|237649928|ref|ZP_04524180.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974] gi|237822523|ref|ZP_04598368.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974M2] gi|298230883|ref|ZP_06964564.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254364|ref|ZP_06977950.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502778|ref|YP_003724718.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A] gi|307067875|ref|YP_003876841.1| signal transduction histidine kinase [Streptococcus pneumoniae AP200] gi|307127186|ref|YP_003879217.1| sensor protein YycG [Streptococcus pneumoniae 670-6B] gi|15458731|gb|AAK99909.1| Histidine kinase [Streptococcus pneumoniae R6] gi|116076498|gb|ABJ54218.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39] gi|147755493|gb|EDK62541.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP11-BS70] gi|147761420|gb|EDK68386.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP18-BS74] gi|147763603|gb|EDK70538.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP19-BS75] gi|147922566|gb|EDK73684.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP3-BS71] gi|147925226|gb|EDK76305.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP6-BS73] gi|147931088|gb|EDK82067.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP23-BS72] gi|168995790|gb|ACA36402.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6] gi|172041979|gb|EDT50025.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00] gi|182629380|gb|ACB90328.1| sensory box sensor histidine kinase [Streptococcus pneumoniae CGSP14] gi|183570459|gb|EDT90987.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00] gi|183574369|gb|EDT94897.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04] gi|183576651|gb|EDT97179.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06] gi|183577215|gb|EDT97743.1| sensor protein YycG [Streptococcus pneumoniae MLV-016] gi|220674381|emb|CAR68931.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669] gi|225721122|gb|ACO16976.1| sensor protein YycG [Streptococcus pneumoniae 70585] gi|225723105|gb|ACO18958.1| sensor protein YycG [Streptococcus pneumoniae JJA] gi|225725453|gb|ACO21305.1| sensor protein YycG [Streptococcus pneumoniae P1031] gi|225728161|gb|ACO24012.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14] gi|298238373|gb|ADI69504.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A] gi|301794309|emb|CBW36734.1| sensor histidine kinase [Streptococcus pneumoniae INV104] gi|301800147|emb|CBW32752.1| sensor histidine kinase [Streptococcus pneumoniae OXC141] gi|301801918|emb|CBW34642.1| sensor histidine kinase [Streptococcus pneumoniae INV200] gi|306409412|gb|ADM84839.1| Signal transduction histidine kinase [Streptococcus pneumoniae AP200] gi|306484248|gb|ADM91117.1| sensor protein YycG [Streptococcus pneumoniae 670-6B] gi|327389462|gb|EGE87807.1| sensory box protein [Streptococcus pneumoniae GA04375] gi|332074836|gb|EGI85308.1| sensory box protein [Streptococcus pneumoniae GA41301] gi|332201689|gb|EGJ15759.1| sensory box protein [Streptococcus pneumoniae GA47368] Length = 449 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T+ ++ ++++ I S+ +G + +I D Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|15901088|ref|NP_345692.1| sensory box sensor histidine kinase [Streptococcus pneumoniae TIGR4] gi|111657844|ref|ZP_01408559.1| hypothetical protein SpneT_02000967 [Streptococcus pneumoniae TIGR4] gi|5830524|emb|CAB54569.1| histidine kinase [Streptococcus pneumoniae] gi|14972707|gb|AAK75332.1| sensory box sensor histidine kinase [Streptococcus pneumoniae TIGR4] Length = 449 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T+ ++ ++++ I S+ +G + +I D Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|324325451|gb|ADY20711.1| sensor histidine kinase; possible sporulation kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 498 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494 >gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 935 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 63/236 (26%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + + H++ +P+ AI ELL E M+ ++ S Sbjct: 322 LRKVSKEAQQASKMKSEFLANMSHEMRTPMNAILGFAELLMNDETNLEKMKYLKTIYRSG 381 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + ++ + I + + + Sbjct: 382 EHLLSLINDVLDLSKIEAARFDLIISPYSPAKLVKEITETYLPMAYSKGLHFANSITERV 441 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L NL + G V++ + + I++++ G+ E Sbjct: 442 PEYVDGDEFRVRQVLTNLVSNGLKFTDK-GYVSVLLDYDGHHLIYTVQDTGSGVSREEI- 499 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E ++ + Sbjct: 500 DKIFEPFIQADGTMSRKFGGTGLGLTITKKIVELMGGSIRFESKVGEGSKVTVRIP 555 >gi|322387745|ref|ZP_08061354.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779] gi|321141612|gb|EFX37108.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779] Length = 449 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYEPVAPDFIKVSLNETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAK 117 + + LI I + + + + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMRSQDQEKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GGK+T++++ + ++ I S+ G + F + + Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKEDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D] gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D] Length = 612 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 KN S + H++ +P+ ++ +E L++ ++ + + +I+ Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420 Query: 57 SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + I + + L + + +R+ Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ N+ A P GG +TI + + I S+ G Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRK 540 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + ++ + + + + Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] Length = 613 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 21/223 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66 DL + L S + H++ +P+ +I ++LL + + E + +I +S Sbjct: 389 DLKSELISIVSHELRTPLTSIRGYIDLLKDETAGKLNEKQKEFVSVISENSERLKRITDN 448 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA 116 M ++ + +I ++ F + + + Sbjct: 449 MSDLVTVDNEHLNTKLDKLNIKNAVEEIVSSLQHFADSRNIILLEDVDDLYIKGDKSKIH 508 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 ++L NL A KVT++ + + G F + + Sbjct: 509 QVLANLIENAVKFSKTQTKVTVTGYEDNGNIHLEITDQGPGIPKEYLDKVFDRFYQIDSS 568 Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E + L Sbjct: 569 SKRKIGGSGLGLAVCKKIVESHGGSIWVESRIGKGTNVHVLFP 611 >gi|89901515|ref|YP_523986.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] gi|89346252|gb|ABD70455.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] Length = 544 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 29/233 (12%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63 L ++ L S I H++ +P+ + L+ + + + L+ + Sbjct: 296 QGEKLASIGVLASGIAHELNNPLTGVLTFTSLMRKKAADGSEDAADLDLVIRETKRCASI 355 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 ++ + V L + V + + + + Sbjct: 356 IRRLLDFAREKVPVKGFFNLNLVIEDTVRFVERPASLQQIEITTALDPALPQVWGDADLI 415 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK------------NENIFSLKINGNLARFPEK 163 +++LNL + A ++ G + ++ + S+ G Sbjct: 416 KQVILNLLVNAQQAIEGKGNIKVASRLYPGMASDKPGVDTLPMVEISVTDTGCGIPPANL 475 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D S + + + ++ E + LL Sbjct: 476 -ERIFDPFFTSKEVGKGTGLGLSVSYGIVKAHGGKINVESVVGEGTTFYVLLP 527 >gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8] gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8] gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima] Length = 412 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 74/228 (32%), Gaps = 26/228 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67 ++ + + H++ +P+ +IH E L E +E+ +++I S + + Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTRLINDL 243 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117 A VD + + ++I+ + + + Sbjct: 244 LDLEKIEESEANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECEDVVVRGNKERLIQ 303 Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 +LLNL A KV + D+ + + ++ G E ++I + Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGI-PKEAQSRIFEKFYR 362 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ ++ E + ++ LL K Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTLMRVLLPK 410 >gi|297530186|ref|YP_003671461.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297253438|gb|ADI26884.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 430 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 +A+ + M +V+ + + I H+I +P+ + ++LL E+ +++ Sbjct: 193 LARAELMKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEE 252 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111 A ++ I + + V S + Sbjct: 253 LERAEAIIRDYLTFAKPAPKETEPIDVATQLQKVLQMITPMAHMHSIHVSSSLEHGVVIG 312 Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + + NL + ++P GG + ++ ++ + ++ NG E+ + + Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNGVGM-TKEQVRRFGEP 371 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E L+ L Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWTIESAVQKGTTLTITLP 415 >gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 633 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 62/230 (26%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + S L + + I H+I +P+ AI +LL D+ ++E Q I+ ++ Sbjct: 396 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRQTIQKNN 455 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + + V + Q ++D + +++ Sbjct: 456 VLLLQLFSDIIDLSKIDAGSFEYMPKPVYLYQFCAMMLQKMKDRVPEGVELRIDEDSPLD 515 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 S +++ N A RG D+ + ++ G + Sbjct: 516 AWFNADSGYLNQVITNFVSNAIKFTHRGTITIGYQIDAARQLEMFVEDTGIGISAENQTA 575 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ L Sbjct: 576 VFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGRIGVTSEFGKGSRFWFTLP 625 >gi|108759200|ref|YP_633189.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108463080|gb|ABF88265.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 515 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 76/237 (32%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 + + + L A+ + ++I H++ +P+ +I ++ELL + EV Sbjct: 279 LKAQAEALMRAEQLAAVGRISAQIVHEVRNPLSSIGLNVELLQDGFETARFATPEDAAEV 338 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQ 101 LI + + D+ V E+ V Sbjct: 339 KDLISAVTQEVDRLADVTEQYLRMARPPRPDLDPRDVTAVLDTVLDFTREELERAGVEVV 398 Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + + ++ LNL + ++P GG++TI + +++ +++ G Sbjct: 399 RDFALDTPHVLADEGQLRQVFLNLLRNSREAMPSGGRLTIVTRPAEDAVEVTVRDTGQGM 458 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + + + + + L + I L + Sbjct: 459 -TEDIRQRLFEPFFTTKEGGTGLGLAVSQQILQVHGGSLSCQSIPGQGTAFVLRLPR 514 >gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 809 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E + Q + + + Sbjct: 573 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 630 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + D + +I + + + + Sbjct: 631 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 690 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ +++ N A G + + F ++ G + T Sbjct: 691 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 750 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + E + Sbjct: 751 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 798 >gi|54309073|ref|YP_130093.1| putative sensor histidine kinase [Photobacterium profundum SS9] gi|46913505|emb|CAG20291.1| putative sensor histidine kinase [Photobacterium profundum SS9] Length = 681 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + ++S L AL L + I H+I +P I ++ELL D+ E + I Sbjct: 431 LNQAKIKLVASEKLAALGELTAGIAHEINNPTAVILGNVELLQLELGDDTQRVKEELDAI 490 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSW 104 + + G D + V E V Q+ Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEITWHHVNLIVEESLTLVRSGTKSYDVKVEAQLDA 550 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLA 158 + ++L+NL M ++ G + + +D ++ + + +G Sbjct: 551 KCCIEANRHQLLQVLINLQMNGVHAMDDKGLLKVKTEDWIDQSGKVLGAVVRVTDHGCGI 610 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + + + + E + + S L Sbjct: 611 -SKENLKRIFNPFFTTRRSGTGLGLSVSQGIISEIGGEIEVQSELGKGSTFSIYL 664 >gi|319939369|ref|ZP_08013729.1| histidine kinase [Streptococcus anginosus 1_2_62CV] gi|319811355|gb|EFW07650.1| histidine kinase [Streptococcus anginosus 1_2_62CV] Length = 450 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVSDLLSLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMIQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GGK+T+S++ + + I S+ G + F + + Sbjct: 331 VIDNIINNAIKYSPDGGKITVSMKTTDTQMILSISDEGLGIPKKDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGSGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 575 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 3 KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57 +N L + + S + H++ +P+ AI S E L E ++E++ LI + Sbjct: 338 ENSNQRLQKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDYDRETQEEMLDLIIRNI 397 Query: 58 MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTG 106 + + VD + ++ Q++E ++ Sbjct: 398 DRQSRMVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATKHGIAIERELDNDP 457 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + ++ +NL A + I +++ + S+ G E Sbjct: 458 RVKADKDKLLRVFVNLLNNAIKFTADRGESIKIKTEETGDFVEISVIDKGIGIPENEQEK 517 Query: 163 KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + + + + + + L K Sbjct: 518 IFEKFYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKSEPGVGSTFVFTLRK 572 >gi|228997617|ref|ZP_04157227.1| hypothetical protein bmyco0003_21910 [Bacillus mycoides Rock3-17] gi|229005218|ref|ZP_04162936.1| hypothetical protein bmyco0002_21570 [Bacillus mycoides Rock1-4] gi|228756029|gb|EEM05356.1| hypothetical protein bmyco0002_21570 [Bacillus mycoides Rock1-4] gi|228762126|gb|EEM11062.1| hypothetical protein bmyco0003_21910 [Bacillus mycoides Rock3-17] Length = 577 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 73/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +D+ L+ Sbjct: 334 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINQEDQDKYFDLMLSEIE 393 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTG---EKID 110 L L I + + I + ++ + Sbjct: 394 RIEAILHEFLSIAKTDVISTEKKNLCSILKNVVSLINTKAIMTNIQINLHIESKELMIDC 453 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I V+ S+ E + ++ G E+ ++ + Sbjct: 454 CENQLKQVFINILQNSIEAMPNGGEISIYVKKSEREEVMINMVDEGVGI-PEERIKRLGE 512 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ R+ ++ L Sbjct: 513 PFYSTKEKGTGIGLMLSYKIIESHQGRISIMSEVGIGTSVTIYLP 557 >gi|310823300|ref|YP_003955658.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396372|gb|ADO73831.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 522 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 80/233 (34%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + K + + + + A+ L + H+I +P+G I +L+ + E + LI Sbjct: 285 LTKRL---IETEKMAAVGQLAGGVAHEINNPLGGILAFAQLMKRDLGRSEADRESLDLIE 341 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVSWT---- 105 S++ ++ + ++ D + D + + + + RV++ Sbjct: 342 ESALRCKRIVESLLKFSRHSKVEDRRHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASG 401 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++++LNL +LP + + + F++ +G+ Sbjct: 402 LPKLFGDPAQLSQVVLNLLQNGLQALPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYL 461 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + ++ + H + L Sbjct: 462 P-RIFEPSFTTKPPGEGTGLGLSIAYRIVQDHGGVFQVDTQVGHGSRFTVFLP 513 >gi|228961728|ref|ZP_04123332.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797963|gb|EEM44972.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|229148015|ref|ZP_04276354.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24] gi|228635440|gb|EEK91931.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|229082672|ref|ZP_04215130.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2] gi|229181711|ref|ZP_04309034.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W] gi|228601744|gb|EEK59242.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W] gi|228700638|gb|EEL53166.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|115377471|ref|ZP_01464673.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1] gi|115365515|gb|EAU64548.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1] Length = 464 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 80/233 (34%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + K + + + + A+ L + H+I +P+G I +L+ + E + LI Sbjct: 227 LTKRL---IETEKMAAVGQLAGGVAHEINNPLGGILAFAQLMKRDLGRSEADRESLDLIE 283 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVSWT---- 105 S++ ++ + ++ D + D + + + + RV++ Sbjct: 284 ESALRCKRIVESLLKFSRHSKVEDRRHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASG 343 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++++LNL +LP + + + F++ +G+ Sbjct: 344 LPKLFGDPAQLSQVVLNLLQNGLQALPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYL 403 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + ++ + H + L Sbjct: 404 P-RIFEPSFTTKPPGEGTGLGLSIAYRIVQDHGGVFQVDTQVGHGSRFTVFLP 455 >gi|30023490|ref|NP_835121.1| two-component sensor kinase yycG [Bacillus cereus ATCC 14579] gi|206970358|ref|ZP_03231311.1| sensory box histidine kinase YycG [Bacillus cereus AH1134] gi|218232571|ref|YP_002370240.1| sensory box histidine kinase YycG [Bacillus cereus B4264] gi|228942614|ref|ZP_04105146.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955716|ref|ZP_04117711.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975544|ref|ZP_04136096.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982180|ref|ZP_04142469.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407] gi|229072930|ref|ZP_04206126.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185] gi|229112878|ref|ZP_04242409.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15] gi|229130711|ref|ZP_04259664.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4] gi|229153623|ref|ZP_04281800.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550] gi|229193716|ref|ZP_04320657.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876] gi|296505893|ref|YP_003667593.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171] gi|29899051|gb|AAP12322.1| Two-component sensor kinase yycG [Bacillus cereus ATCC 14579] gi|206734935|gb|EDZ52104.1| sensory box histidine kinase YycG [Bacillus cereus AH1134] gi|218160528|gb|ACK60520.1| sensory box histidine kinase YycG [Bacillus cereus B4264] gi|228589741|gb|EEK47619.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876] gi|228629852|gb|EEK86504.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550] gi|228652728|gb|EEL08613.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4] gi|228670557|gb|EEL25870.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15] gi|228710176|gb|EEL62154.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185] gi|228777532|gb|EEM25810.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407] gi|228784154|gb|EEM32181.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803944|gb|EEM50568.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817040|gb|EEM63133.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296326945|gb|ADH09873.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171] gi|326943263|gb|AEA19159.1| two-component sensor kinase yycG [Bacillus thuringiensis serovar chinensis CT-43] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|311281442|ref|YP_003943673.1| integral membrane sensor signal transduction histidine kinase [Enterobacter cloacae SCF1] gi|308750637|gb|ADO50389.1| integral membrane sensor signal transduction histidine kinase [Enterobacter cloacae SCF1] Length = 470 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSM 58 LVAL L + + H+I +P+ +I E E G E+ +++ + Sbjct: 239 QEAMNRKEKLVALGHLAAGVAHEIRNPLSSIKGIAKYFAERTPEGGEPHELARVMAKEAD 298 Query: 59 SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKID 110 L+ ++ A SVD + Q++ + Sbjct: 299 RLNRVVSELLELVKPAHLALQSVDLNEVIAHSLQLVSQDAQSREIALRYTPNPGLCRIEA 358 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++LLNL++ A ++ R + + +++ +G PE+ I Sbjct: 359 DPDRLTQVLLNLYLNAIHAIGRQGTIEVEARECDGQRVKIAVRDSGKGI-APEQLQAIFT 417 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + + + V + L Sbjct: 418 PYFTTKAEGTGLGLAVVQNIIEQHGGTIQATSVVGNGAVFTLYLP 462 >gi|303258861|ref|ZP_07344840.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP-BS293] gi|303261545|ref|ZP_07347492.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP14-BS292] gi|303264215|ref|ZP_07350135.1| sensory box sensor histidine kinase [Streptococcus pneumoniae BS397] gi|303266154|ref|ZP_07352047.1| sensory box sensor histidine kinase [Streptococcus pneumoniae BS457] gi|303268119|ref|ZP_07353919.1| sensory box sensor histidine kinase [Streptococcus pneumoniae BS458] gi|302637125|gb|EFL67613.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP14-BS292] gi|302639804|gb|EFL70260.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP-BS293] gi|302642336|gb|EFL72683.1| sensory box sensor histidine kinase [Streptococcus pneumoniae BS458] gi|302644324|gb|EFL74578.1| sensory box sensor histidine kinase [Streptococcus pneumoniae BS457] gi|302646027|gb|EFL76254.1| sensory box sensor histidine kinase [Streptococcus pneumoniae BS397] Length = 449 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T+ ++ ++++ I S+ +G + +I D Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDCFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 478 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 60/218 (27%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF--- 71 + + H++ +P+ AI LE L + + ++ +M + + Sbjct: 257 ANVSHELRTPLTAIQGFLEALQDGLVEEEEARQKYYAVMYTETMQVNRLVDDLMDLMKLE 316 Query: 72 --------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNL 122 D + + + + V+V +I ++R +IL NL Sbjct: 317 NNEVNLVKFPVDVADVMNRVAFSFHQEAEEKGLHMGVEVEDELPRIYADKDRIAQILKNL 376 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177 A G + D + G + + + + + + Sbjct: 377 VKNALKFTSAGEIRMRASLD-GEYVQIQVIDTGMGIAADDLDRIWERFFKVDRGRSKNNK 435 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + E + L + Sbjct: 436 GTGLGLAIVKELVELHDGKCRVESSPGKGSTFTIWLPR 473 >gi|254761651|ref|ZP_05213671.1| sensory box histidine kinase YycG [Bacillus anthracis str. Australia 94] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|254724123|ref|ZP_05185908.1| sensory box histidine kinase YycG [Bacillus anthracis str. A1055] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|229035123|ref|ZP_04189069.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271] gi|228728189|gb|EEL79219.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|228918077|ref|ZP_04081605.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930471|ref|ZP_04093471.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936745|ref|ZP_04099536.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949187|ref|ZP_04111455.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124968|ref|ZP_04254142.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201] gi|228658469|gb|EEL14135.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201] gi|228810470|gb|EEM56823.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822954|gb|EEM68795.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829190|gb|EEM74827.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841557|gb|EEM86673.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|229159025|ref|ZP_04287081.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342] gi|228624444|gb|EEK81215.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|229176140|ref|ZP_04303633.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3] gi|228607375|gb|EEK64704.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|229094576|ref|ZP_04225643.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42] gi|229187694|ref|ZP_04314830.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1] gi|228595762|gb|EEK53446.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1] gi|228688823|gb|EEL42654.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|229142214|ref|ZP_04270738.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26] gi|229199594|ref|ZP_04326255.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293] gi|228583999|gb|EEK42156.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293] gi|228641232|gb|EEK97539.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|251799232|ref|YP_003013963.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247546858|gb|ACT03877.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 490 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 76/230 (33%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSSMDL-VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 KNI L ++ AL L + H+I +P+ I ++LL E + + R + Sbjct: 259 RKNIEKMLRLSEMNAALGELAVGVAHEIRNPLTGIRGFVQLLGETLKRYGIEKEQRYVDL 318 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 + L + +++ + +QV I + Sbjct: 319 IQTELSRINDLVSEMLWLRKPKESSMETIDMLKLVNDILPLIQVDTNMNNIQMDTYGVVA 378 Query: 116 -----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++LNL + ++ GG++ + ++++ + ++ +G P+ Sbjct: 379 GRSIKANVALLKQVILNLCKNSIEAMESGGRLVLGLREADHTVTLFVQDSGPGI-PPDVM 437 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E L + V+S Sbjct: 438 DKLFTPFFTTKQSGNGLGLFISKQIIVEMGGELTIQTGLP-GTVVSVTFP 486 >gi|190568905|ref|ZP_03021807.1| sensory box histidine kinase YycG [Bacillus anthracis Tsiankovskii-I] gi|190559972|gb|EDV13955.1| sensory box histidine kinase YycG [Bacillus anthracis Tsiankovskii-I] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|167636243|ref|ZP_02394546.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442] gi|167528358|gb|EDR91129.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442] Length = 611 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 384 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 443 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 444 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 503 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 504 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 562 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 563 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 601 >gi|206975846|ref|ZP_03236757.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97] gi|217962958|ref|YP_002341536.1| sensory box histidine kinase YycG [Bacillus cereus AH187] gi|222098942|ref|YP_002533000.1| sensory box histidine kinase yycg [Bacillus cereus Q1] gi|206745940|gb|EDZ57336.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97] gi|217065919|gb|ACJ80169.1| sensory box histidine kinase YycG [Bacillus cereus AH187] gi|221243001|gb|ACM15711.1| sensory box histidine kinase YycG [Bacillus cereus Q1] gi|324329416|gb|ADY24676.1| sensory box histidine kinase YycG [Bacillus thuringiensis serovar finitimus YBT-020] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 664 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 28/224 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV--------------GIEDEVMQLIRLSSMSAII 62 L + + H++ +P+ AI E+L + I D L+ + + + Sbjct: 428 FLAA-MSHELRTPLNAIMGFSEVLLDQHFGPLNDKQQVYVNDILDSARHLLEIINDVLDL 486 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAK 117 Y +VD L +I+D A V + R + Sbjct: 487 AKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDVRRFKQ 546 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 I+ NL A P GG + + +D+ S++ G I + Sbjct: 547 IMYNLLSNAVKFTPDGGAIKVECRDAGEWLEISVEDTGIGIAATHA-EHIFEPFYQVSGN 605 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLE 214 + + L + R+ E + +L Sbjct: 606 LTAKTPGTGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLP 649 >gi|118480493|ref|YP_897644.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196041968|ref|ZP_03109255.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99] gi|196045450|ref|ZP_03112681.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108] gi|225867446|ref|YP_002752824.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102] gi|300118834|ref|ZP_07056554.1| sensory box histidine kinase YycG [Bacillus cereus SJ1] gi|301056939|ref|YP_003795150.1| sensory box histidine kinase YycG [Bacillus anthracis CI] gi|118419718|gb|ABK88137.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196023657|gb|EDX62333.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108] gi|196027223|gb|EDX65843.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99] gi|225789643|gb|ACO29860.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102] gi|298723802|gb|EFI64524.1| sensory box histidine kinase YycG [Bacillus cereus SJ1] gi|300379108|gb|ADK08012.1| sensory box histidine kinase YycG [Bacillus cereus biovar anthracis str. CI] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|49481209|ref|YP_039455.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036107|ref|ZP_03103507.1| sensory box histidine kinase YycG [Bacillus cereus W] gi|218906657|ref|YP_002454491.1| sensory box histidine kinase YycG [Bacillus cereus AH820] gi|49332765|gb|AAT63411.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991274|gb|EDX55242.1| sensory box histidine kinase YycG [Bacillus cereus W] gi|218538378|gb|ACK90776.1| sensory box histidine kinase YycG [Bacillus cereus AH820] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|52145273|ref|YP_086730.1| sensor histidine kinase [Bacillus cereus E33L] gi|51978742|gb|AAU20292.1| sensor histidine kinase [Bacillus cereus E33L] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 812 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L S I H++ +P+ +I+ EL+ + + + + S RL + F + Sbjct: 590 LVSTISHELRTPLSSIYGFTELMIQRDLPPHRQKKYLAAVHSETERLSLLINDFLDLQRM 649 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--------------ERAKILLNLF 123 ++ E + D + S + D+ + ++ NL Sbjct: 650 EANRQEYTFEPFDLLAMMKDLKQLHSLSSSSHDIRIFSEETVQIINGDSKKIRQLFGNLV 709 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNV--ESTIDS 178 A P GG + I V + N +L G E F + + I Sbjct: 710 NNAIKYSPDGGPIEIRVTEHNNRVTVALTDYGIGIPSSAMSELFQKFYRVDNSDTRQIGG 769 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + E I+ + L Sbjct: 770 TGLGLSICREIARAHDGEIHVESIEGQGSTFTVDLP 805 >gi|47568664|ref|ZP_00239361.1| histidin [Bacillus cereus G9241] gi|47554652|gb|EAL13006.1| histidin [Bacillus cereus G9241] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|30265483|ref|NP_847860.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames] gi|47531051|ref|YP_022400.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames Ancestor'] gi|49188302|ref|YP_031555.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne] gi|65317446|ref|ZP_00390405.1| COG5002: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165872528|ref|ZP_02217161.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488] gi|167641431|ref|ZP_02399681.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193] gi|170689184|ref|ZP_02880381.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465] gi|170708650|ref|ZP_02899089.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389] gi|177651823|ref|ZP_02934406.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174] gi|227818234|ref|YP_002818243.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684] gi|229602903|ref|YP_002869674.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248] gi|254687094|ref|ZP_05150952.1| sensory box histidine kinase YycG [Bacillus anthracis str. CNEVA-9066] gi|254735140|ref|ZP_05192850.1| sensory box histidine kinase YycG [Bacillus anthracis str. Western North America USA6153] gi|254742151|ref|ZP_05199838.1| sensory box histidine kinase YycG [Bacillus anthracis str. Kruger B] gi|254755939|ref|ZP_05207971.1| sensory box histidine kinase YycG [Bacillus anthracis str. Vollum] gi|30260161|gb|AAP29346.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames] gi|47506199|gb|AAT34875.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames Ancestor'] gi|49182229|gb|AAT57605.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne] gi|164711751|gb|EDR17295.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488] gi|167510606|gb|EDR86002.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193] gi|170126432|gb|EDS95320.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389] gi|170666827|gb|EDT17593.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465] gi|172082527|gb|EDT67591.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174] gi|227004751|gb|ACP14494.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684] gi|229267311|gb|ACQ48948.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437] Length = 600 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 63/233 (27%), Gaps = 24/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58 + L + + H++ +P+ + E L + + E+ ++I S+ Sbjct: 360 TEERRMD--KLRKDFVANVSHELRTPLSMLQGYSEALLDDIAASPEDQREITRVIHDESL 417 Query: 59 SAIIRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ + + + + + Sbjct: 418 RMGRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVYRKFQAIAREEKVALQVDLPDGMD 477 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + ++L NL A P GG+VT+ ++ ++ G+ + Sbjct: 478 PVQWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALFAEKGVQLIVEDTGSGIPQEDLPFV 537 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V +A + + + + + L Sbjct: 538 FERFYKADKARTRGQGGTGLGLAIVKHIAEAHAGSVSVKSKEGEGTRFTVQLP 590 >gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 606 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 70/234 (29%), Gaps = 25/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + ++ + + + H++ +P+ + + LE L + I + + + + Sbjct: 367 TEQEKIDMERRE----FVANVSHELRTPLTTMRSYLEALTDGAWKDEKIAPQFLGVTQNE 422 Query: 57 SMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + I + + L + V+ + D ++ + KR + Sbjct: 423 TERMIRLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFEMAKQQNVTFKRKLPNTE 482 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + ++L N+ A P GG++T +++ + S+ G Sbjct: 483 IFVEIDEDKMTQVLYNIISNALKYSPEGGQITFKLRELNEKIEVSISDQGVGIPKENVKK 542 Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + + L Sbjct: 543 IFERFYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKEGKGTTIYFTLP 596 >gi|28377005|ref|NP_783897.1| histidine protein kinase; sensor protein [Lactobacillus plantarum WCFS1] gi|254555221|ref|YP_003061638.1| histidine protein kinase; sensor protein [Lactobacillus plantarum JDM1] gi|300769136|ref|ZP_07079025.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28269836|emb|CAD62733.1| histidine protein kinase; sensor protein [Lactobacillus plantarum WCFS1] gi|254044148|gb|ACT60941.1| histidine protein kinase; sensor protein [Lactobacillus plantarum JDM1] gi|300493376|gb|EFK28555.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 624 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 67/225 (29%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-A 70 S + H++ +P+ ++ + +E L + + +++ + + I + + + Sbjct: 384 QFVSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSLS 443 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRE 114 +G+ + L +I ++ + + + + Sbjct: 444 RMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEIDTDK 503 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L N+ A P GG VT + ++ N+ I S+ G + Sbjct: 504 FTQVLDNIMNNAIKYSPDGGVVTCRLLETHNQVIISISDQGLGIPRADLGHVFDRFFRVD 563 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ + ++ L Sbjct: 564 KARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLP 608 >gi|310823681|ref|YP_003956039.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396753|gb|ADO74212.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 530 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 70/227 (30%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57 + + + L AL L +++ H+I +P+ A+ S ++L + + V++L + Sbjct: 290 LRRAEDELRRADRLAALGTLAAQLAHEIRNPLAAMRGSAQMLAQDGAEDPSVVRLTNILL 349 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + L + + + V +S + Sbjct: 350 RESDRLSRLVEEFLRFARPPPPQRRVAALDELIRETVEMLQADPLRRGVHLSLELRPVMA 409 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167 S + ++ L + + G + ++ + + ++ + A +I Sbjct: 410 SVDPDQLRQVLLNLLRNAFEAVGPEGRTRVSLSVSAEQKVLLAVWDS-AGAIPEAHLVRI 468 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ RL + L Sbjct: 469 FEPFFTTRSGGTGLGLATAYSIVRAHEGRLQVTSSPGSGTEFTVELP 515 >gi|270292777|ref|ZP_06198988.1| sensory box histidine kinase VicK [Streptococcus sp. M143] gi|270278756|gb|EFA24602.1| sensory box histidine kinase VicK [Streptococcus sp. M143] Length = 449 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + D V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117 + T LI I + + + + + + Sbjct: 271 IDNATTRLDVELINFTAFITFILNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172 ++ N+ A P GGK+T+S++ + ++ I S+K G + F + Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432 >gi|52079393|ref|YP_078184.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52784753|ref|YP_090582.1| hypothetical protein BLi00981 [Bacillus licheniformis ATCC 14580] gi|319646826|ref|ZP_08001055.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52002604|gb|AAU22546.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52347255|gb|AAU39889.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391414|gb|EFV72212.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 674 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 71/225 (31%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--S 57 ++ + S L A+ L + I H+I +P+ ++ L+L+ + + + +S Sbjct: 448 KRSEKMLMKSEMLSAVGQLAAGIAHEIRNPLTSLKGFLQLMIQSKKYQKDYAEVMMSEFI 507 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115 I +F+ LA + + D + +E V + V + E Sbjct: 508 RLEAIINEFLVLAKTKSNTFDPVQVNSIVEDVCMVLESQAVLNNVRIEKQLSGDLPEILA 567 Query: 116 -----AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 ++ +N+ A ++ + + + + G E ++ + Sbjct: 568 VSNELKQVFINILKNAIEAMEDAEGFITIRSYFEKDSVFITFEDQGKGI-SKEVLEKLGE 626 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + ++ L Sbjct: 627 PFYTTKEKGTGLGLMVTFKIIENHGGSIHFESEEGKGTIVKLKLP 671 >gi|301059874|ref|ZP_07200765.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300446024|gb|EFK09898.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 441 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 18/233 (7%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 + ++ L + + ++ L + + H I +P+ ++ L L+ + + ++I Sbjct: 206 LERSQETLLQAEKMASVGKLAAGMAHSIRNPLTSVKMRLFSLDRTLELSPAQQDDFEVIS 265 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKI 109 ++ I +I + + + V V Sbjct: 266 GEIRHIDTIVQNFLEFSRPPKLKTQKISPSEIVDLVLQLLHHRLESYNVTVTVERRQPLP 325 Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + ++ L + + + + + + +G + P Sbjct: 326 EIQVDPEQLKEALINILENACEAMEGGGSIVIHEEKGFREPHGPVAVIQITDSGPGIQKP 385 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ S + + + + L L Sbjct: 386 -IQNKVFQPFFTSKEEGTGLGLSITSRIMESHGGSLELISESGKGATFVLTLP 437 >gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61] gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61] Length = 470 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 56/231 (24%), Gaps = 19/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 ++I + + L S + H++ +P+ I ELL + + + I + Sbjct: 231 RDITKQAEVDRMKSELVSTVSHELRTPLAGILGLAELLLNKPLAPERQRKYLTAIGQEAE 290 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EK 108 + + + I + I +++ Sbjct: 291 RLMALINDFLDVQRMEAGRQTYRWEPVDLVPIMEKIIDAEKMGTDIHTFSVSVETKRTMI 350 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ NL A P GG V I + + ++ G Sbjct: 351 RGDRERLRQLFTNLVHNAVKYSPNGGAVVIRLYEHSGCLCVDVQDEGLGIPAEALPHIFE 410 Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V +A + + + + Sbjct: 411 KFFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFP 461 >gi|239636842|ref|ZP_04677841.1| sensor protein ResE [Staphylococcus warneri L37603] gi|239597516|gb|EEQ80014.1| sensor protein ResE [Staphylococcus warneri L37603] Length = 586 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 60/217 (27%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 370 ANVSHELRTPIALLQGYTESIVDGVVTEPDEIHESLAIVLDESKRLNRLVNELLNVARMD 429 Query: 74 ----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 D L + + + ++ + +VS ++L NL Sbjct: 430 AEGLSVEKESQPIADLLNKMRIKYRQQATDLELNMQFEVSNQQLWDYDMDRMDQVLTNLI 489 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--S 178 A G +++ + +I S+ G + F + + Sbjct: 490 DNASRYTQPGDTISVKTDEDDRSHILSIADTGTGIAPEHLQQVFDRFYKVDASRKRGKQG 549 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + E L K Sbjct: 550 TGLGLFICKMIIEEHGGTIEVESQVGKGTTFIIKLPK 586 >gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1346 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 56/238 (23%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + L + + + H+I +P+ + ELL E+ + E + + + S Sbjct: 802 LERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMDLTKEQRECVEIIHRSG 861 Query: 61 IIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 L + ++ + Sbjct: 862 ETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPRAAAKQLELICFIEERA 921 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFP 161 E ++L NL A RG V + + + S++ G Sbjct: 922 LEVQGDPHRLRQVLSNLIGNAIKFTERGEVVVEAELERLDERRAHWRISVRDTGIGIPPD 981 Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + L + E + + Sbjct: 982 RLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMMGGTIGVESEVGKGSTFTVRIP 1039 >gi|89074890|ref|ZP_01161340.1| putative sensor histidine kinase [Photobacterium sp. SKA34] gi|89049287|gb|EAR54850.1| putative sensor histidine kinase [Photobacterium sp. SKA34] Length = 664 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53 + + + S L AL L + I H+I +P+G I ++EL+ + E + I Sbjct: 415 LNQARSKLVISEKLAALGELTAGIAHEINNPLGVILGNVELIQFELGDNTVQVQEELDAI 474 Query: 54 RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++V V+++ Sbjct: 475 HAQIDRIRNITRSLLQYSRQGGVQNEVTWHHLNQIVEESLTLVRSGTKKLSVTFVVELNA 534 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLA 158 + ++L+NL M ++ + I Q N I + +G Sbjct: 535 KCSVEVNRHQLLQVLVNLQMNGIHAMEDKGRLIIRTEDWIDEQGQSNGAIVRVIDHGCGI 594 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I D + + L + + E S L Sbjct: 595 -AKENLERIFDPFFTTRRSGTWLGLSVSQSLIEDIGGEITVESEIGQGTTFSVYL 648 >gi|168701908|ref|ZP_02734185.1| signal transduction histidine kinase, nitrogen specific, NtrB [Gemmata obscuriglobus UQM 2246] Length = 418 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 70/235 (29%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDE---VGIEDEVMQLIR 54 + + L + L + I H++ +P+G + +E LL + ++++ Sbjct: 170 LRATTQQLWQAAKLAGVGELAASIAHELNNPLGTVSLRIEGLLAKTPADDPRRRPLEVVE 229 Query: 55 LSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106 + + +VD + ++ + + Sbjct: 230 GEVERMAGLVANLLQFSRAGRDQVSTVDVCEEVSRTVDLVAHHLRKHGVLVEPQFAPGVP 289 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161 + ++ LNLF A ++PRGG++ V D + + + G Sbjct: 290 HIHADRQHLRQVFLNLFTNAADAMPRGGRLVPRVRAGALPDGRPAVVIEIADTGVGI-PA 348 Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + + ++ L E + L Sbjct: 349 ELRDRVFEPFFTTKEEGKGTGLGLAICRRIVQQHHGTLEVESALGAGTTIRITLP 403 >gi|219849546|ref|YP_002463979.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543805|gb|ACL25543.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 666 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 64/251 (25%), Gaps = 41/251 (16%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 MA+ + + L A+ L + + H+I +P+ A+ N++ LL + E L Sbjct: 417 MARELA---QAEKLAAIGRLSASMAHEINNPLQALSNTIRLLRNPDLPSERRDLYLAKAA 473 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----G 106 L R VD + D+ + + Sbjct: 474 LELDGLIHRVQRILDLSRPNLEGRRPVDLNQVVNDVIANFRSTLTARNIHYIGDCTSSLP 533 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----------------------S 143 + ++ L A ++P GG + I Sbjct: 534 WVTAVIGHLKQVCQTLVQNAIEAMPHGGTLHIRTYLRPPDGEPDRALFWRAGGGARQPLP 593 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 + + G E +I + + + + + + L Sbjct: 594 DPAVVLEISDTGIGI-AHEDVPKIFEPFYSTRFNGLGLGLPLCYSIVDFHGGELWVRSQP 652 Query: 204 DHNVVLSALLE 214 D +L Sbjct: 653 DQGTTFRVILP 663 >gi|295704436|ref|YP_003597511.1| sporulation kinase KinA [Bacillus megaterium DSM 319] gi|294802095|gb|ADF39161.1| sporulation kinase KinA [Bacillus megaterium DSM 319] Length = 574 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 72/222 (32%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + + LV L + I H+I +P+ A+ ++LL E + +++I Sbjct: 351 TEKLLRESAQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIE 410 Query: 62 -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSR 113 K + D L + +V + + ++ I Sbjct: 411 LITDEFLSLAKPQAKTYKDKHIQDILENTLKLAEVQGITEKIHVKKEIDLHLPLVICEEN 470 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ N+F A S+P GG VTI + ++ + G E+ + Sbjct: 471 QLKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENLVVRFSDEGPGI-TQERMQHLGKPFY 529 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+K + + LL Sbjct: 530 STKEKGTGLGLMVCYKIIREHKGEINFVSKLGKGTTVDILLP 571 >gi|304569720|ref|YP_011608.2| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|311234506|gb|ADP87360.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 418 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 75/263 (28%), Gaps = 50/263 (19%) Query: 1 MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE-------------- 42 + K + + +L + + H++ +P+ AI+ E +L Sbjct: 153 LQKEFQAKFHQAEKMATVGMLAAGVAHEVNNPLTAINGFAEGILRRVKRLRGSVDPDLHA 212 Query: 43 --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 ++ R L F R V+ + + D +++ + + K Sbjct: 213 DLTDYAGTILGECRRCQEIVHSLLTFSRPHSSAFSPVNLNVVVDDTLKLLHNHLKQPKYR 272 Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLP--------------------RG 133 V + +++LNL + A +L + Sbjct: 273 HVRIDTRLCPTAPVILGCEAQLKQVMLNLLVNALDALEAVAPSAGDSGDDAPPDAHGGKT 332 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191 +T++ + F+++ G+ E + + + I + Sbjct: 333 AVITVAPFRDERHAGFTVRDTGSGI-PQEHLHSLFEPFFTTKPVGRGIGIGLSTCYTIVT 391 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 E+ + E + V + L Sbjct: 392 EHGGDISVESKEGEGSVFTVTLP 414 >gi|77919755|ref|YP_357570.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77545838|gb|ABA89400.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 481 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 65/229 (28%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 + K + + + + L + + H+I +P+ AI L LL G + +++ Sbjct: 247 LKKTRDELIHTARMATVGHLAAGLAHEIGNPLTAIIGYLSLLKAELRSGPQTGLVERASG 306 Query: 56 SSMSAIIRLKFMRLAFGYTGSV-----DSLIGLGDIEQVIEDFIAVDKRVQVSWTG---E 107 + ++ + + + I+ + + +Q Sbjct: 307 EANRIDRLVRDLLDFASPASTTAELFDPIRVFEEAIDILTHQGKISGEMIQNDLPPVLAP 366 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ +NL + +L G + +S + ++ NG E I Sbjct: 367 VHMVRHRLLQVFINLVSNSRDALVGPGTIRLSAGVLEGWVSLNVADNGIGI-EEESLQHI 425 Query: 168 VDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + E + + L Sbjct: 426 FDPFFTTKEPGKGRGLGLAVCYRVIREAGGYIEVVSDKGRGTEFTVRLP 474 >gi|237727861|ref|ZP_04558342.1| sensory kinase in two component regulatory system with HydG [Citrobacter sp. 30_2] gi|226910418|gb|EEH96336.1| sensory kinase in two component regulatory system with HydG [Citrobacter sp. 30_2] Length = 493 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 76/229 (33%), Gaps = 19/229 (8%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRL 55 K + + L+AL L + + H+I +P+ +I E G E+ Q++ Sbjct: 260 KELQDAMKRKEKLLALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAK 319 Query: 56 SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---- 107 + L+ ++ A VD + ++ A + +Q+ ++ Sbjct: 320 EADRLNRVVSELLELVKPAHLTLQKVDLNEVITHSLHLV-SQDAASREIQLRFSANSTLP 378 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++LLNL++ A ++ R + + S + +G E+ Sbjct: 379 AIQADPDRLTQVLLNLYLNAIHAIGRQGTITVEANESSGERVKIVVTDSGKGI-AAEQLE 437 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + V + ++ + ++ + L Sbjct: 438 AIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIQVASVEGKGATFTLWLP 486 >gi|83591310|ref|YP_431319.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83574224|gb|ABC20776.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 489 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 60/225 (26%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I +E L++ + + +I + ++ Sbjct: 248 EQMRTEFVANVSHELRTPLTSIRGFVETLLEGALEDPEVSRRFLGIINHEAQRLQQLIED 307 Query: 67 M--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI---DLSRE 114 + + G D L + V + ++ E Sbjct: 308 LLSLSRLESQPKRQDAGRADLAATLDRVLTTVNQLAREKGVALEKEIPAEIPELAISESY 367 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171 ++LLNL P GG+VTI + G P F + + Sbjct: 368 LNQVLLNLIDNGIKYTPAGGRVTIRAARLGELVQVEVADTGIGIPPESLPRVFERFYRVD 427 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + L Sbjct: 428 KARSREMGGTGLGLAIVKHIVESHGGSISVTSRPGQGSHFFFTLP 472 >gi|148264166|ref|YP_001230872.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397666|gb|ABQ26299.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 682 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 69/237 (29%), Gaps = 27/237 (11%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-------------DE 48 + + + ++ L + + H+I +P+ ++ E L + + Sbjct: 434 QELQLIQNDKMSSIGVLATGVAHEINNPLSSVAGYAEALLRRFRDEPALGEDKRLAAFPK 493 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +++I S + + + VD L +I +++ + V+ Sbjct: 494 YLEVIIRESYHCKRIIDCLLNFGRKSDGSVGRVDINGILLEILELLRHQWSGGYIEVVTN 553 Query: 105 TGEKIDLSRERA----KILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR 159 + I L ++ +NL M AH + GG + ++ G Sbjct: 554 LKKNIPLIHGDPTGLRQVCMNLLMNAHQASKEGGLVEITTDCTDDKMVCVKVRDTGCGI- 612 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + + + E + L Sbjct: 613 AQDVIDRIWDPFFTTKEVGKGLGLGLAITYNIVKSHGGEISVESHIGEGSQFTLYLP 669 >gi|117621516|ref|YP_857574.1| sensory box sensor histidine kinase AtoS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562923|gb|ABK39871.1| sensory box sensor histidine kinase AtoS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 697 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 71/235 (30%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + L S L AL LC+ + H+I +P+ I ++EL+ E + L+ Sbjct: 429 LTQARQQLLISEKLAALGELCAGVAHEINNPLAVILGNVELMKLELGEAAEPVSEELALV 488 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 489 LAQIERIRAITRSLLQYSRPGDYETAPVWQHLTPIIEESLTLVRSALRQQQVNLVADLRA 548 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLA 158 ++ ++L+NL + A +L G++ + +D ++ + NG+ Sbjct: 549 QQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWLDDAGALQGAEVRVIDNGSGI 608 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + + LL + + L Sbjct: 609 EAA-IIDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVDSSPGQGSCFTIRL 662 >gi|300854424|ref|YP_003779408.1| putative phosphate regulon sensor protein [Clostridium ljungdahlii DSM 13528] gi|300434539|gb|ADK14306.1| predicted phosphate regulon sensor protein [Clostridium ljungdahlii DSM 13528] Length = 574 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 20/222 (9%), Positives = 61/222 (27%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK--- 65 ++ + + + H++ +P+ +I E L D+V +++ + +I + + Sbjct: 344 ENMRSQFVANVSHELKTPLTSIKGFAETLKYVDDVENKNKFLNIINDEADRLTRLINDIL 403 Query: 66 -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 D + + + + + + ++ Sbjct: 404 TLSHIESNSIDKVEEVKIDDIVKDVCCMMKTAAYKKNIKIEKIGDKVPSIWADADRFKQM 463 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 +NL + GG V I N + ++ NG E +++ + Sbjct: 464 AINLMDNSIKYTNNGGTVKIGTMLQDNNCVLWVEDNGVGI-SKEHQSRLFERFYRVDKAR 522 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + + Sbjct: 523 SRNQGGTGLGLAIVKHIVLGLSGTIDLQSEVGKGSKFTVKIP 564 >gi|251778065|ref|ZP_04820985.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082380|gb|EES48270.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 564 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 19/223 (8%), Positives = 62/223 (27%), Gaps = 17/223 (7%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64 + ++L + + H++ +P+ +I E L ++ ++ + +I S + Sbjct: 340 IKKLELMRTQFVANVSHELKTPLTSIKGFAETLRYVEDNETREKFLNIIDKESERLSRLI 399 Query: 65 K----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + ++ + + + ++ + + Sbjct: 400 NDILVLSSIESNISTPNDEFLPKVIIEDVINMVRKLANNKDINLEFYDDNQELILGDKDK 459 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 ++ LNL A G KV + + + NG + F + + Sbjct: 460 FYQLTLNLVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFYRVD 519 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + ++ Sbjct: 520 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRIK 562 >gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 555 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 19/223 (8%), Positives = 62/223 (27%), Gaps = 17/223 (7%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64 + ++L + + H++ +P+ +I E L ++ ++ + +I S + Sbjct: 331 IKKLELMRTQFVANVSHELKTPLTSIKGFAETLRYVEDNETREKFLNIIDKESERLSRLI 390 Query: 65 K----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + ++ + + + ++ + + Sbjct: 391 NDILVLSSIESNISTPNDEFLPKVIIEDVINMVRKLANNKDINLEFYDDNQELILGDKDK 450 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 ++ LNL A G KV + + + NG + F + + Sbjct: 451 FYQLTLNLVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFYRVD 510 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + ++ Sbjct: 511 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRIK 553 >gi|332203074|gb|EGJ17142.1| sensory box protein [Streptococcus pneumoniae GA47901] Length = 449 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A GGK+T+ ++ ++++ I S+ +G + +I D Sbjct: 331 VVDNILNNAIKYSSDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|295702489|ref|YP_003595564.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294800148|gb|ADF37214.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 601 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 68/229 (29%), Gaps = 17/229 (7%) Query: 2 AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + + S L + + H+I +P+ IH + L L + + + L+ Sbjct: 372 TEELEKRMHQSEKLALVGEVAAGAAHEIRNPLAVIHGFISLMNQSLSDEEKKRFYLPLLM 431 Query: 55 LSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ M + V + ++ +I ++ ++ + + Sbjct: 432 KELERINYIIEEMLLLSKPGTPVMKKVSMQDIINELLPLITHSSKFTEKDKLIFDVKLQP 491 Query: 111 LS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L NL + ++ G +TI Q + ++ NG Sbjct: 492 HILKVDEKQIKQVLHNLIRNSIEAMDGEGVITIYSQVHDDNYCLYIEDNGKGIPLH-MQQ 550 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + ++ V L Sbjct: 551 SLYQPFSTSKDSGTGLGLPIAQRILESHGGQIKLLSTSSRGTVFVIKLP 599 >gi|269926551|ref|YP_003323174.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790211|gb|ACZ42352.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 486 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 69/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A+ L+ ++ + H++ +P+ I + E++ E ++ Sbjct: 226 LARTFNSLLNRLEKAFESQKRFVADASHELRTPLTTIRGNAEVMLMDPNLPPDVREGLEN 285 Query: 53 IRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 IR + + + Y + L ++Q+ + R++ Sbjct: 286 IRGEVSRLSRLVSNLLMLARADAGQVNLTYRPVNLHDVVLDTLKQMHTSIDGLSVRLERE 345 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + +++LNL A P+GG V +SV ++ G E Sbjct: 346 DQVMVSGDADQLKQVMLNLLDNAFKYTPKGGSVYVSVYAEPPWAKVEIRDTGIGIAPSEL 405 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + R+ + L Sbjct: 406 TRIFERFYRSSKAPKGAGSGLGLSIAQWVVRAHNGRITVSSKQGEGSTFTVWLP 459 >gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] Length = 1206 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52 + L + L + H+ +P+ + LE LD+ I + Sbjct: 550 RQQAERLLEADRLKTEFFQNVSHEFRTPLTLMIGPLETVVNQQQDLSLDQAKIALRNSRR 609 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + +F + L+ K++ + + Sbjct: 610 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQSCPQL 669 Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 K+L NL A P G +T+S+Q N +K G + + Sbjct: 670 YLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNYCRLMVKDTGIGIKQEQLPHLFE 729 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +G+ + + + V L + R+ E + L+ Sbjct: 730 RFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGTTFTVWLQ 780 >gi|167464856|ref|ZP_02329945.1| two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 508 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 21/224 (9%), Positives = 65/224 (29%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58 + + S L V L + + H+I +P+ ++ ++LL E D + ++ Sbjct: 278 KRAEELLIKSEKLSVVGQLAAGVAHEIRNPLTSLKGFVQLLQEKIDGYDTYLDIMVSELE 337 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT---GEKID 110 + + L + + + I + ++ Sbjct: 338 RINFIVSEFLVFAKPQRVHFQPKDLHQMLKNTVALLNTKAIMSNVEIKDEIQELLPLVFC 397 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +N+ + ++P GG + + + S G +I + Sbjct: 398 DENQIKQVFINVLNNSIEAMPEGGTIRLGGNCKDGQVTLSFSDEGVGISENRLT-RIGEP 456 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K ++ + ++ Sbjct: 457 FYTTKEKGTGLGLMASYKIMENHKGQIKITSEVNKGTIVHLRFP 500 >gi|148265586|ref|YP_001232292.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399086|gb|ABQ27719.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 641 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 27/232 (11%) Query: 9 LSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIE-------------DEVMQLI 53 + + + + +L + I H+I +P+ +I E L + +++I Sbjct: 401 IQTEKMSGIGVLATGIAHEINNPLTSIAGYAEGLLRRFRDEPALKDDCRLDVFPHYLEVI 460 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEK 108 S + + + + + + I V + + Sbjct: 461 VRESYRCKGIIDHLLSFSRKSDGSAVEVDMNVVLLEILELLRHQQIYRQIEVVTHLSKDL 520 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++ +NL + AH S+ G + ++ G +K Sbjct: 521 HSVLGDPSGLRQVCMNLLINAHQSIKGTGLVELTTENLDDTTVSVRIRDTGCGI-AQDKI 579 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + E + LL Sbjct: 580 DRIWDPFFTTKEVGKGIGLGLALTYNIIKRHGGEIQVESRPGEGTQFTVLLP 631 >gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis] gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 1202 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52 + L + L + H+ +P+ + LE LD+ I + Sbjct: 550 RQQAERLLEADRLKTEFFQNVSHEFRTPLTLMIGPLETVVNQQQDLSLDQAKIALRNSRR 609 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + +F + L+ K++ + + Sbjct: 610 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQSCPQL 669 Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 K+L NL A P G +T+S+Q N +K G + + Sbjct: 670 YLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNYCRLMVKDTGIGIKQEQLPHLFE 729 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +G+ + + + V L + R+ E + L+ Sbjct: 730 RFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGTTFTVWLQ 780 >gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 1066 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52 + L + L + H+ +P+ + LE LD+ I + Sbjct: 550 RQQAERLLEADRLKTEFFQNVSHEFRTPLTLMIGPLETVVNQQQDLSLDQAKIALRNSRR 609 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + +F + L+ K++ + + Sbjct: 610 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQSCPQL 669 Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 K+L NL A P G +T+S+Q N +K G + + Sbjct: 670 YLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNYCRLMVKDTGIGIKQEQLPHLFE 729 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +G+ + + + V L + R+ E + L+ Sbjct: 730 RFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGTTFTVWLQ 780 >gi|228905409|ref|ZP_04069364.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL 4222] gi|228854229|gb|EEM98932.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL 4222] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|228911304|ref|ZP_04075108.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL 200] gi|228848322|gb|EEM93172.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL 200] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|228924209|ref|ZP_04087480.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835427|gb|EEM80797.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|229164415|ref|ZP_04292344.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803] gi|228619065|gb|EEK75962.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803] Length = 588 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K VS+ + + + ++L N Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578 >gi|75761473|ref|ZP_00741438.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900606|ref|YP_002449017.1| sensory box histidine kinase YycG [Bacillus cereus G9842] gi|228968615|ref|ZP_04129600.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis serovar sotto str. T04001] gi|74491034|gb|EAO54285.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544459|gb|ACK96853.1| sensory box histidine kinase YycG [Bacillus cereus G9842] gi|228791107|gb|EEM38724.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis serovar sotto str. T04001] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] Length = 806 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 19/227 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ +I LL E +E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNSIVGFSSLLAETDDREERQEYIKIVETNNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107 + +D I + +E + + Sbjct: 638 LLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSLEMKVPETVDLVFEKYMPDCH 697 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A +G Q + +E F ++ G EK I Sbjct: 698 IYTDKNRFMQVITNFINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGVGI-PKEKIDSI 756 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + V + + + L + ++ E + Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSLVSQMGGKIGVESTEGEGSCFWFT 803 >gi|228932077|ref|ZP_04094969.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827660|gb|EEM73402.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 462 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 296 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 297 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 356 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 357 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 416 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 417 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 455 >gi|229099892|ref|ZP_04230815.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29] gi|229118955|ref|ZP_04248300.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3] gi|228664480|gb|EEL19976.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3] gi|228683507|gb|EEL37462.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29] Length = 613 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K VS+ + + + ++L N Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|268316551|ref|YP_003290270.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334085|gb|ACY47882.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 486 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVM 50 MA+ + ++ S++ + L + I HD+ +P+ A+ E LL + E + Sbjct: 243 MAQAVARSIRSLEETDRMRRELMAGIGHDLRTPLAALLGYAEEARRLLQQGNTEAAVEAL 302 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ ++ + L + D R G + Sbjct: 303 AVVEERGRHLQRLVEALFELSLLERPEPPLQLEPVPLGELLDETFRAHRRLFQDAGLTLQ 362 Query: 111 LSR------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++L NL A P GG V + + ++ E ++ G Sbjct: 363 ADWPLALPVVEADGARLRRVLDNLLDNARRHTPAGGTVWLGARATETEVHIWVQDTGPGL 422 Query: 159 RFPEKFTQIVDGNVESTIDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE+ ++ + + + +A + RL + +L + Sbjct: 423 -SPEQQARLFEPYGRQKSGASRGLGLLISQAIARAHGGRLEVTSAPGQGSTFTLILPR 479 >gi|320536673|ref|ZP_08036688.1| PAS domain S-box [Treponema phagedenis F0421] gi|320146495|gb|EFW38096.1| PAS domain S-box [Treponema phagedenis F0421] Length = 413 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 K N ++ L +L L + + H+I +P+ AI ++LL + + Sbjct: 146 KKRTEINHRRLESLASLTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACDLHINEKAQKH 205 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSW 104 + ++ + A + + + I + + Sbjct: 206 LNVVEEEIDRLNKIVVNFLFAVRPLQVELAPVNINKIINDLHQTFLDEFKKSGVYFSLRL 265 Query: 105 TGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + +N A A++ GG + I + + G Sbjct: 266 DKTIPIIQGDERLLRQAFMNFLTNAKAAMKTGGALIIYTTCKDDFIEIYISDTGQGI-SE 324 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + D + + E+ + + + + L Sbjct: 325 ENLHKIFEPYFSTKSDGTGLGLTMAYKVIKEHNGDIHVDSVVGEGTCFTIYLP 377 >gi|308179222|ref|YP_003923350.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|308044713|gb|ADN97256.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 624 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 66/225 (29%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-A 70 S + H++ +P+ ++ + +E L + + +++ + + I + + + Sbjct: 384 QFVSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSLS 443 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRE 114 +G+ + L +I ++ + + + + Sbjct: 444 RMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEIDTDK 503 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L N+ A P GG VT + ++ N I S+ G + Sbjct: 504 FTQVLDNIMNNAIKYSPDGGVVTCRLLETHNRVIISISDQGLGIPRADLGHVFDRFFRVD 563 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ + ++ L Sbjct: 564 KARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLP 608 >gi|42780523|ref|NP_977770.1| sensor histidine kinase KinD [Bacillus cereus ATCC 10987] gi|42736443|gb|AAS40378.1| sensor histidine kinase KinD [Bacillus cereus ATCC 10987] Length = 498 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + L ++LV + H+I +P+ I + LL E + +I Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111 + + T ++ + I + V Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ A ++ G +TI V +++ + G + Sbjct: 393 KDHMKQVVLNIIKNAIEAMTSGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I++ + + Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494 >gi|229159472|ref|ZP_04287489.1| hypothetical protein bcere0009_2780 [Bacillus cereus R309803] gi|228623980|gb|EEK80789.1| hypothetical protein bcere0009_2780 [Bacillus cereus R309803] Length = 672 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS+++L+ + + I H+I +P+ A+ L+LL E ++ Q +L Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTAVRGFLQLLKEENTYEKHNQYFKLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + +V +V + E + Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNAIIHDIIPLIKVDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSERKVLTISTYKEGQNCVVLAVRDQGKGI-KPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|254464572|ref|ZP_05077983.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacterales bacterium Y4I] gi|206685480|gb|EDZ45962.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacterales bacterium Y4I] Length = 346 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 65/238 (27%), Gaps = 27/238 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + + + H++ +P+ A+ +E L ++ D + ++ + Sbjct: 108 DVTEREQAGQMRRDFVANVSHELRTPLTALIGFIETLRGPAREDAPARDRFLAIMEGEAS 167 Query: 59 SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + A +V + E + Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPKQTVDLTGHLASTLKTLQPVAEARGVQVSLEAPDEAV 227 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENI-----FSLKINGNLARFP 161 ++ + ++ A +V +S D + NG Sbjct: 228 SVTGDPDQLQQVFTNLVENAVKYGGDQVRVVLSRTDRDPSVRAAAARVQVIDNGPGIDPV 287 Query: 162 EKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL + V + +L Sbjct: 288 HLPRLTERFYRADSHRSREMGGTGLGLAIVKHIVNRHRGRLRVDSELGQGSVFTVVLP 345 >gi|189425218|ref|YP_001952395.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421477|gb|ACD95875.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 498 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + + + S + + LL + H+I +P+ ++ E+L + + + I Sbjct: 260 LQQAREEAIRSEKMASVGLLAAGTAHEIGTPLASVMGYAEILAQELEHNPAHADYLARIM 319 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 S +K + +V + L + Q + ++ ++ Sbjct: 320 DSCGRIDRIVKGLLEYARPKQTVHEPVDLSLLMQATVELLQHQGFFKGIKLTMTTEPASS 379 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKF 164 S + ++ L + + + K + + G PE Sbjct: 380 LASLDPHQLQQVLINLLINASDAMPQGGEIKLALKQGADKKILLLEVWDTGTGI-APEHL 438 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + R+ + + + Sbjct: 439 GKLFDPFFTTKSPGKGTGLGLAISARIIESFGGRITVQSRVGLGSRFTIHVP 490 >gi|226310932|ref|YP_002770826.1| sporulation kinase [Brevibacillus brevis NBRC 100599] gi|226093880|dbj|BAH42322.1| sporulation kinase [Brevibacillus brevis NBRC 100599] Length = 470 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60 A+ N + LV L + I H+I +P+ ++ ++L+ + + E ++ Sbjct: 247 AQEFLQNSEKLALVGQLAAGIAHEIRNPLTSLKGFVQLMQKDGMRKPEYFSIMSSELARI 306 Query: 61 IIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + +V L + + + I +QV + E + + Sbjct: 307 EMIVSELLVLAKPHTAVFEARDLSNLITHVVTLLETEAILKKVMIQVVFESEVPLIHCDE 366 Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ + G++ I ++ + + + NG + ++ + Sbjct: 367 NQLKQAFINFLKNGIEATAGNGEIVIRLRCEDDRVVIRFEDNGVGIPAHQ-MARLGEAFF 425 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ L + + L Sbjct: 426 TTKETGTGLGLMVSRKIIENHRGTLRLISTPGNGTAVEVCLP 467 >gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 844 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 64/237 (27%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + L + + + + + + H++ +P+ I EL+ + ++E+ + + Sbjct: 605 QRAEEARLRAEEASRMKSEFLASMSHELRTPLNGIIGFAELIKDDAADEEMRENAEIIEK 664 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQV 102 S +VD + ++ + + ++ Sbjct: 665 SGSHLLNLVNTILDVAKIEAGAMTLARETVDIRTLVTEVAAIHQSGADAKGLDFQVQLAD 724 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 + ++L NL A G+V V K+ + + +G Sbjct: 725 DLPPALVTDPVRVRQVLHNLLSNAVKFTQA-GRVHTVVAADKDSVVIRVIDSGPGIALDL 783 Query: 160 FPEKFTQIVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + G + + + L + E L Sbjct: 784 QDKIFEKFHQGDAFLTRSHGGTGLGLTLARHLVELMGGEMSLESQVGQGSTFVFTLP 840 >gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942] Length = 977 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H++ +P+ AI E++ E + ++ + Sbjct: 467 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 524 Query: 62 IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 K + Y S + ++ +I+ I ++ + Sbjct: 525 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 584 Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + LLNL A G + + ++ +F + +G PE Sbjct: 585 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTDSAAGCCQGDQVVFKVVDSGIGM-SPE 642 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + ++ E + + L + Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701 >gi|307543807|ref|YP_003896286.1| histidine kinase [Halomonas elongata DSM 2581] gi|307215831|emb|CBV41101.1| histidine kinase [Halomonas elongata DSM 2581] Length = 639 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 65/235 (27%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 + + + + L L L + I H++ P+ AI E D ++ Sbjct: 389 LRETRDELVQAAKLAVLGQLAAGINHELNQPLSAIRAYAENARAFIERGRAETADANLEQ 448 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSW 104 I + +R +G + + + +R + Sbjct: 449 IIELTERMSEISAQLRQFSRKSGDTLTAVSVPSCFDYALRLFQARLNELGVTVERHWQAE 508 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPE 162 ++L+NL A ++ + ++ + + + +G P+ Sbjct: 509 DIWVRADPVRLEQVLVNLIGNALQAMADTATPHLVLTIDSTPEQVQIRVADSGPGIAEPQ 568 Query: 163 KFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + + + R+ + + + L + Sbjct: 569 LS-RVFEPFFTTKSAGSGLGLGLSISGRIIDDLGGRIEADNAPGGGAMFTITLPR 622 >gi|315221423|ref|ZP_07863344.1| PAS domain S-box [Streptococcus anginosus F0211] gi|315189542|gb|EFU23236.1| PAS domain S-box [Streptococcus anginosus F0211] Length = 450 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVSDLLSLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GGK+T+S++ + + I S+ G + F + + Sbjct: 331 VIDNIINNAIKYSPDGGKITVSMKTTDTQMILSISDEGLGIPKKDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 SRAQGGSGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLP 432 >gi|89092823|ref|ZP_01165775.1| sensor histidine kinase [Oceanospirillum sp. MED92] gi|89082848|gb|EAR62068.1| sensor histidine kinase [Oceanospirillum sp. MED92] Length = 709 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + L L L L + I H+I +P I +++LL D+V E + +I Sbjct: 444 LKSTRKQLLDKEKLAVLGELTAGIAHEINNPAAVILGNVDLLVAELADDVNPVQEEVDMI 503 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSW 104 + + V+S + + + + + V ++ Sbjct: 504 IQQVYRIRSLINNLLQYSRPGHYVESYELMATDKVIDDTLLLVSHALEKQQVTVEKAYQA 563 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLAR 159 + ++ ++L+NL + A +L ++ ++ ++ +G Sbjct: 564 SCPVEINCQQVQQVLVNLILNASHALEGPGSIKLKTSNWLEEEQIIGSVIEVEDHGKGI- 622 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P+ ++I D + + + + + + V S L Sbjct: 623 DPDNLSKIFDPFFTTKKSGTGLGLSVSYGIIRRHGGDIRVHSSPESGTVFSVYL 676 >gi|322384029|ref|ZP_08057756.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151376|gb|EFX44566.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 517 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 21/224 (9%), Positives = 65/224 (29%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58 + + S L V L + + H+I +P+ ++ ++LL E D + ++ Sbjct: 287 KRAEELLIKSEKLSVVGQLAAGVAHEIRNPLTSLKGFVQLLQEKIDGYDTYLDIMVSELE 346 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT---GEKID 110 + + L + + + I + ++ Sbjct: 347 RINFIVSEFLVFAKPQRVHFQPKDLHQMLKNTVALLNTKAIMSNVEIKDEIQELLPLVFC 406 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +N+ + ++P GG + + + S G +I + Sbjct: 407 DENQIKQVFINVLNNSIEAMPEGGTIRLGGNCKDGQVTLSFSDEGVGISENRLT-RIGEP 465 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K ++ + ++ Sbjct: 466 FYTTKEKGTGLGLMASYKIMENHKGQIKITSEVNKGTIVHLRFP 509 >gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2] gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Bacterial sensor protein C-term [Methanococcus maripaludis S2] Length = 614 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66 +L + + S + H++ +P+ AI +ELL + + E + +I +S Sbjct: 389 NLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISENSDRLKRITDN 448 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA 116 M ++ ++ + DI + + F V + + + Sbjct: 449 MSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVLLEDVDNLDIKGDKSKIH 508 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 ++L NL A + KVT+ + K + G F + + Sbjct: 509 QVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPKEHLGKIFDKFYQIDSS 568 Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + + Sbjct: 569 SKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTTVHVMFP 611 >gi|320334937|ref|YP_004171648.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] gi|319756226|gb|ADV67983.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1510 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 19/215 (8%), Positives = 54/215 (25%), Gaps = 2/215 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++ L + H++ +P+ A+ L L+ + + + + Sbjct: 1289 LEEQAGQLEEALKLQKTFLAETSHELRTPLTALLGYLRRLEREAGATQTLHDAARVAENM 1348 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + ++ ++ S E + ++ + Sbjct: 1349 TRLVNDLLQLSRGELVQSIEPHFVNLADIVRAVGRDYGIRVDSPDIEVVADPGRLTQVFV 1408 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH- 179 NL A KV + +D + + G + +I D Sbjct: 1409 NLVSNAIRICGTPDKVRVYAEDHGQDITIDVIDTGPGV-PDDVKPRIFDKFYRGKEAGSA 1467 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ L Sbjct: 1468 GLGLTIAQQVVQAHGGRIEVLDTPGGGATFRVTLP 1502 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 57/226 (25%), Gaps = 18/226 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSS 57 + ++ +L A + HD+ +P+ I +LL + + +I ++ Sbjct: 877 RTAALQDANRELEAF-SYSVSHDLRTPLRHIVGFADLLRKDTGTLSDKSARYLGIITDAA 935 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLG-------DIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + D D + ++ Sbjct: 936 TKMSTLIDDLLEFSRMGRQELRRAPVNLTELAEEARADLQPDAEGRDVQWRLHDLPTVPA 995 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARF---PEKFT 165 ++ +NL A + I V+ + + + NG F Sbjct: 996 DRALMKQVFVNLLGNALKYSGKQAHARIEVRAEQGTDSVTVHVSDNGVGFDPAYADRLFG 1055 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + I V + + + + S Sbjct: 1056 VFQRLHRADEFNGTGIGLANVRRIINRHGGTVNAHSTPGEGATFSF 1101 >gi|304405287|ref|ZP_07386947.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304346166|gb|EFM12000.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 573 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 12/215 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLK 65 + + LV + + I H+I +P+ I ++LL E + ++I A + Sbjct: 338 RMDRLSLVGQMAASITHEIRNPMAVIRGFVQLLKERSGQDMQDYFRIIMDELDRANAIIN 397 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDLSRERAK 117 +L+ L ++ + I D ++ + +E + Sbjct: 398 DFLSLAQNRLIDKNLLSLNNLLMEMLPLITADANLRGLAVECRLEPNLPELFLNDKEIKQ 457 Query: 118 ILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LNL ++ G S S ++ G EK ++ + + Sbjct: 458 LILNLARNGLEAMADGDGALQLSTYTSAEMVQLRVQDAGVGI-SQEKMERLFEPFFTTKT 516 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + +A + R+ E + Sbjct: 517 KGTGLGLPVCLSIAERHHGRIDVESEEGKGTTFIV 551 >gi|299821103|ref|ZP_07052991.1| sensor histidine kinase [Listeria grayi DSM 20601] gi|299816768|gb|EFI84004.1| sensor histidine kinase [Listeria grayi DSM 20601] Length = 610 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 61/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++++ LE L + E + +++ + + I + + Sbjct: 382 FVSNVSHELRTPLTSMNSYLEALRDGAWEDKEIAPQFLEVTQNETERMIRLVNDLLKLSR 441 Query: 73 YTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121 + + + + + +++ N Sbjct: 442 MDAGRESLEKSFVNFTDFFNHIIDRFEMMKKDTIMFIRHIPKLPIIIEIDEDKIMQVMDN 501 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++ S+ G + + Sbjct: 502 IISNANKYSPDGGRISFYLKKWSDKIQISVSDEGLGIPDEDLDKVFDRFFRVDKARSREM 561 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + + L Sbjct: 562 GGTGLGLAIAKEVIESHGGHIWAERNNGRGTTIHFTLP 599 >gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 537 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 63/222 (28%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ I E L ++ +++I S ++ + Sbjct: 316 FVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLS 375 Query: 72 G--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRERAKIL 119 + + ++E A + V ++ + ++L Sbjct: 376 QLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRLEQVL 435 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A P GG +T+S ++ S+ G + +I + Sbjct: 436 INLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLP-RIFERFYRVDAARS 494 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + E L K Sbjct: 495 RDEGGTGLGLSIVKHIIQLHGGSITVESEHGKGTTFRFTLRK 536 >gi|227814547|ref|YP_002814556.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|227004812|gb|ACP14555.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] Length = 509 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S + A+ L + + H++ +P+ I ++L +++ L+ Sbjct: 262 KKTEELLNKSDTIAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 321 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 +F+ +A S + + V+ + Sbjct: 322 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 381 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I +++ + I S+ G E+ ++ + Sbjct: 382 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 440 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ + ++ L K Sbjct: 441 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 486 >gi|229051134|ref|ZP_04194678.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676] gi|228722197|gb|EEL73598.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676] Length = 613 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D I D + K VS+ + + + ++L N Sbjct: 446 LDSTEYRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D + S+ G E +I + Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603 >gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 416 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + ++I + + + H++ +P+ +IH E L ++ + +I Sbjct: 172 LLRDITKEKEVEAMRRDFVANVSHELRTPLTSIHGYAETLAEDDLEDKETVYRFLSIIEN 231 Query: 56 SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S + + + + + + I + + V V V Sbjct: 232 ESARMTRLINDLLDLEKLESGEASFSKEDVELGEVVNYVMRIVEPLASEKNVSINVDVDE 291 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160 ++LLNL A + + N + ++ G Sbjct: 292 GIFVEGDFDRLVQLLLNLVDNAVKYTFAKEHGPKEIWLRAYAQNNSAMIEVEDTGVGIPE 351 Query: 161 P---EKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + ++ + E +L L Sbjct: 352 DSLKHIFERFYRVDKARSRKMGGTGLGLAITRFIVEKHGGTISLESEYGTGTILKVKLP 410 >gi|283852154|ref|ZP_06369427.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572380|gb|EFC20367.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 306 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 25/232 (10%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------------EVGIEDEVMQL 52 L S L A+ L S I H+I +P+ I L+L+ ++ + + Sbjct: 75 QLLQSQKLAAIGELSSGIAHEINNPLAIITQELDLVREIAGEGPDVTAADLAEARDSLAE 134 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107 I + + V L + + + + + + Sbjct: 135 IGRQVDRCRLVTHKLLNFARKMEPVLQEEALDQVIEDMALLAEREAAGRGLAIVRDYAPG 194 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +++LNL A A+ P+GG +T+S + + ++ G PE Sbjct: 195 LPPIRTDVPLLRQVILNLLTNALAATPKGGTITVSTRRDEKTICIEVRDTGCGI-PPENM 253 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + L E + L Sbjct: 254 QKIFNPFFTTKEPGKGTGLGLSLAHGIVTRLGGTLAAESRPGQGAAFTVTLP 305 >gi|229014631|ref|ZP_04171745.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048] gi|228746642|gb|EEL96531.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048] Length = 611 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54 + + + H++ +P+ + + LE L + +D + + Sbjct: 372 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 429 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 L+ +L + + D + D + K VS+ + Sbjct: 430 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 489 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L N+ A P GG VT ++D S+ G E +I Sbjct: 490 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 548 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + L Sbjct: 549 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601 >gi|229065124|ref|ZP_04200417.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603] gi|228716153|gb|EEL67872.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603] Length = 586 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54 + + + H++ +P+ + + LE L + +D + + Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 L+ +L + + D + D + K VS+ + Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 464 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L N+ A P GG VT ++D S+ G E +I Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + L Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576 >gi|229136290|ref|ZP_04265037.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196] gi|228647162|gb|EEL03250.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196] Length = 586 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54 + + + H++ +P+ + + LE L + +D + + Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 L+ +L + + D + D + K VS+ + Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 464 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L N+ A P GG VT ++D S+ G E +I Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + L Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576 >gi|229170167|ref|ZP_04297854.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621] gi|228613312|gb|EEK70450.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621] Length = 586 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54 + + + H++ +P+ + + LE L + +D + + Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 L+ +L + + D + D + K VS+ + Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 464 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L N+ A P GG VT ++D S+ G E +I Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + L Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576 >gi|163943145|ref|YP_001648029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163865342|gb|ABY46401.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 611 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54 + + + H++ +P+ + + LE L + +D + + Sbjct: 372 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 429 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 L+ +L + + D + D + K VS+ + Sbjct: 430 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 489 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L N+ A P GG VT ++D S+ G E +I Sbjct: 490 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 548 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + L Sbjct: 549 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601 >gi|148262988|ref|YP_001229694.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter uraniireducens Rf4] gi|146396488|gb|ABQ25121.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter uraniireducens Rf4] Length = 362 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----MSAIIR 63 + L L L + + H+I +P+G I + +LL+ ++ ++ Sbjct: 130 QADRLSTLGALAAGLAHEIKNPLGGIKGAAQLLEMELPDNAELRDCTRVMLKEVQRVNRI 189 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116 ++ + + + L I I + + D S Sbjct: 190 VEELLELASPRKLDLTKVNLHKILGDIILLQKRTVDDRRVTFQQHFDPSIPPILADEALL 249 Query: 117 -KILLNLFMVAHASLPRGG------------KVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ LNL A ++ G +T + + +G E+ Sbjct: 250 TQLFLNLIKNAVEAVGAVGLIKVSSRVLADYSMTQKGEGRSRMVAIEVSDDGPGI-LKEQ 308 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + +L Sbjct: 309 LEHLFTPFYTTKAKGTGLGLAICHKIVAEHRGMIRVDSEPTKGTTFTVMLP 359 >gi|85710770|ref|ZP_01041831.1| Signal transduction histidine kinase (contains HAMP domain) [Idiomarina baltica OS145] gi|85695174|gb|EAQ33111.1| Signal transduction histidine kinase (contains HAMP domain) [Idiomarina baltica OS145] Length = 437 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 22/204 (10%), Positives = 54/204 (26%), Gaps = 6/204 (2%) Query: 17 LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 LL + + HD+ +P+ I + E++ ++ V + ++ + Sbjct: 227 LLMAGVSHDLRTPLTRIRLAAEMMPESEDYLARGIVEDVDDMNDIIDQFIDYVRLDQQEK 286 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 L + D + ++++NL A Sbjct: 287 ASRESLNELLEQTLANLPDSWEKTFSADLGDCPLVWVRPLSIKRVVVNLLENAERYGRSR 346 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190 V FS+ +G + F G+ + + + Sbjct: 347 ACVRSGYDKQSKTVWFSVADDGPGIPEEQQQSLFQPFTQGDKARGGVGSGLGLAIIKRIV 406 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + R+ D+ + + L Sbjct: 407 DRHNGRITLRNQDEGGLCVRIDLP 430 >gi|86157005|ref|YP_463790.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773516|gb|ABC80353.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 516 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + + L + L A+ + ++I H+I +P+ AI + ELL E Sbjct: 270 LDRQRAELLRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLV 329 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105 + L +I + + A V + Sbjct: 330 SAISREVDRLNAVTEEYLRFARLPRPQLERHDLNEILGGLLDFLGPELAAARVDVHRALA 389 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160 + + ++ + ++P GG V + + + ++ G Sbjct: 390 PGLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVRVVTRRVDSGAGVEVELGDTGGGIPP 449 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + + E+ + E V + Sbjct: 450 GDLT-RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTVFTLRFP 502 >gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 428 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 20/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 + K + L + + I H+ +P+ +I +S ELL+ + + + Q IR Sbjct: 167 LRKALAQEQEFNHLKSRMIIAISHEYRTPLTSILSSSELLEAYCHRWDKSKQSQHFQRIR 226 Query: 55 LSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + +D + + D+ ++ + ++ Sbjct: 227 AAVQRITDLMGNVMFLNKAEFEQLEFQPTPLDLGVFVRDLVDDMQQHYGDKHHLILNIDQ 286 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +IL +L A P GGKV I N+ IF + +G E+ Sbjct: 287 DCGRPLFDSKLLLQILTHLIDNAIKYSPNGGKVLIKFTCQNNQVIFEVSDDGIGIPRKEQ 346 Query: 164 FT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 G+ I + V + + + +L + Sbjct: 347 HNLFNAFHRGSNVENISGTGLGLAIVKKCVDIHGGTISLNSDVSVGTTFTVMLPR 401 >gi|116695400|ref|YP_840976.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113529899|emb|CAJ96246.1| signal transduction histidine kinase [Ralstonia eutropha H16] Length = 680 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 + ++S L L + + H+I +PI I +L++ E ++LI Sbjct: 434 LRATRQQLITSEKLVVAGHLTAGVAHEINNPIAVIQGNLDVAREILGPAAEPVRHELRLI 493 Query: 54 RLSSMSAIIRLKFMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106 + + + + + ++V Sbjct: 494 DEQVRRIHLLTNRLLQFVRPEAYAGNMERLDAGEVAAGCVDLVQHMLKGASIRVELDCLA 553 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEK 163 + E ++++NL A ++P GG +T + ++ G+ R + Sbjct: 554 TRQVRISRSELQQVVVNLLTNAIHAMPEGGTLTLGTRDWDGQGVTLHVRDTGHGIREEDV 613 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + L R+ E L Sbjct: 614 PNLFNPFFTTKKQMGTGLGLSISYALVERYGGRITVESAVGQGAEFIVWL 663 >gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 922 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 +A++ + + D + + + H++ +P+ AI L+ + + E ++ S Sbjct: 514 LAQSEKDRIRAEDANRMKDEFLATVSHELRTPLTAILGWARLIKDKALAPERVKQGMASI 573 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------- 102 + + + V + + Sbjct: 574 ERNAHAQAQIVDDILTVSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAKAKEIEIRVEP 633 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +++ NL A P+ G VT+ V S ++ S+ NG Sbjct: 634 GEGLSHVCGDPDRLQQVMWNLLSNAVKFTPKRGLVTVRVGRSDSQVAISVTDNGKGIATS 693 Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 F + G+ + V L + + E + + L Sbjct: 694 FLPYVFDRFRQGDSSPTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGAGSTFTVTLP 752 >gi|110597378|ref|ZP_01385665.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110340922|gb|EAT59393.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 372 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 74/225 (32%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + L L + + + H+I +P+ +I + E+L + + E + + + Sbjct: 139 EEQLRRAEKLSTLGEMAAVLAHEIRNPLSSIRGTAEILRDDYPTGTPKHEFIDIQIRETE 198 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ + D + V+ D +Q+ + + Sbjct: 199 RLNRVVEEFLHMARQQPMAMKPCRVQDELETIVTLVMNDARKRQVALQLQPNAVAMIVMA 258 Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169 + + LN+ + A + P GG+VTIS +++ + +G +I + Sbjct: 259 DSEKLRQAFLNIIINALQATPEGGRVTISTTIAEHAFCEIRFRDSGPGV-EKAAMERIFE 317 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + +K L E + ++ L Sbjct: 318 PFFTTKSDGTGLGLAITKNIIENHKGTLKVESEAANGTTVTIRLP 362 >gi|163847651|ref|YP_001635695.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222525510|ref|YP_002569981.1| response regulator receiver sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668940|gb|ABY35306.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222449389|gb|ACM53655.1| response regulator receiver sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 396 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 23/232 (9%) Query: 6 CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61 L +D + + + H++ +P+ ++ LEL D + + + +R+ S+ Sbjct: 160 NAQLQDLDRMKDQFLATLSHELRTPLTSLLGYLELFDRGMLGPLTPQQEEAVRVMRRSSE 219 Query: 62 IRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + F +D L L + + V +S Sbjct: 220 VLARQLNNLLYFQEVRSRSLNFVQLQPLDILRPLIAAARERAAQAQLQFEVLLSEMQPIE 279 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ NL A GG+V V+D I ++ G E +I Sbjct: 280 VDRSAFEHLVRNLLDNAFQYTEPGGRVRFIVRDEPTRLIIRVEDTGIGIPAGE-QEKIFL 338 Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + ++ + + + Sbjct: 339 PFYQVDHSLARGHPGSGLGLAIVRHIVEAHGGQIALRSAPGEGSAFTIAIPR 390 >gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] Length = 1230 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + H+I +P+ AI EL+ + ++ + + + SA Sbjct: 648 LREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKPDQQNYVSTINNSA 707 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + ++ + Q + + + + Sbjct: 708 KSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQARKKELDLQLEICDEV 767 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +G S ++L+NL A G +++ F + G ++ Sbjct: 768 SGYYYGPSHRIRQVLMNLVGNAIKFTDIGSVKLKVYAQNQDVIHFDVVDTGIGI-AADRL 826 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + L + S L Sbjct: 827 DAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQLGKGSCFSINLP 882 >gi|326202142|ref|ZP_08192012.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987937|gb|EGD48763.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 462 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 74/230 (32%), Gaps = 18/230 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 ++ N+ + L L + H++ +P+ + + LE + + + E ++ + Sbjct: 232 DLAENMEKQEILRKRLTGDVAHELRTPLATLQSHLEAMMDGIWPADSERLKSCHEEIVRI 291 Query: 61 IIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKID 110 + + A + + + DI ++ + I + +S Sbjct: 292 SKMVGDLEKLARYESENFVLNMDTFDITELAKRQIHNFESEFLSKGLELKLTGADCRVYA 351 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + +++L+NL A P GG V I++Q + S+ NG + F + Sbjct: 352 DKDKISQVLVNLLSNALKYTPEGGMVVINIQYNDVNTEISVTDNGPGIPGEDLPYIFERF 411 Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + + + + K Sbjct: 412 YRADKSRNKLTGGSGIGLAICKSIVLAHGGSINVQSNIGKGTKFTFTIPK 461 >gi|167464654|ref|ZP_02329743.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 463 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 12/216 (5%) Query: 10 SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 S L + + + H+I +P+ I L+LL + + ++ + Sbjct: 229 KSEKLSVAGQMAAGVAHEIRNPLFIISGFLQLLKKNPGNTSYVDVMITEVERINGIVDDF 288 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKIDLSRERAKIL 119 L + DI + + V+ + + ++L Sbjct: 289 LLLSRPGDMKMESQKIEDIVEETMRLFQSNAEDIGIEIVLVKEADLPPVFCEPNQLKQVL 348 Query: 120 LNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +N+ ++ +GG++TI + K+ + G PE +I + + + Sbjct: 349 INMIKNGMEAMSQGGRITIELTYPLKDYLQIRICDQGEGI-DPEALERIGEPFYTTKENG 407 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +L D LL Sbjct: 408 TGLGLMVSCRIIEYHHGKLNVYSKKDEGSTFEILLP 443 >gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 637 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + ++ + + H+I +P+ AI E++ + + E +++I+ +S + + Sbjct: 279 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 338 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + F + + + Q+ K ++ Sbjct: 339 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 398 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 ++L N A + +G + + G + Sbjct: 399 MQVLFNFLSNAIKNTEKGSITLGLKHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKLND 457 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + + L Sbjct: 458 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSMFALYLP 497 >gi|7521408|pir||D71379 probable sensory transduction histidine kinase - syphilis spirochete Length = 394 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---------EVM 50 K S L L L + + H+I +P+GA+ L+LL + + + Sbjct: 142 KKQEEIYNRSESLANLTNLAATVAHEIKNPLGAMSIHLQLLRKNFSTCSFETNKRIQKHL 201 Query: 51 QLIRLSSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ + + ++L D + + D Sbjct: 202 HVVEEEIERLNRIVTGFLSAVRPLKLNITRLSVFDLVTSIRDTFMKPSPKQNCLSLYICH 261 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + L+N+ A ++ RGG + + V + S+ G Sbjct: 262 TIFPTYEAMNTCRQALVNIITNAKEAMQRGGALEVFVHKQTDHISISISDTGEGIDARNI 321 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + E+ + + LL Sbjct: 322 HN-IFEPYFTTKTEGTGLGLTLTFKVIKEHGGDISVSSTVGRGTCFTLLLP 371 >gi|127514609|ref|YP_001095806.1| integral membrane sensor signal transduction histidine kinase [Shewanella loihica PV-4] gi|126639904|gb|ABO25547.1| integral membrane sensor signal transduction histidine kinase [Shewanella loihica PV-4] Length = 713 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56 + + +++ L AL L + I H+I +P I ++ELL ++V + I + Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLKSELGDKAEDVEEEIDIV 511 Query: 57 SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSW--- 104 +R Y+ + ++ ++ I + V + Sbjct: 512 IEQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIVEEMAILVRHSIKKQEVVLIQDLNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159 + + ++L+NL + A ++ G++ I D ++ G Sbjct: 572 SYPIEVNRPQLLQVLINLVVNAAHAMDGQGRIWIRTYDWVQGGEPIGVKIEVEDEGKGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ +I D + D + + + + + L Sbjct: 631 PEEQLGRIFDPFYTTRQDGTGLGLSLSYGIIKRIGGTIEVSSTVGKGTLFTIGL 684 >gi|296134421|ref|YP_003641668.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermincola sp. JR] gi|296032999|gb|ADG83767.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermincola potens JR] Length = 524 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 71/226 (31%), Gaps = 18/226 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 MA++ + L + H+I +P+ ++ ++LL + + E + +I Sbjct: 304 MARSEKLAV-----AGQLAAGAVHEIKNPLTSVRGFIQLLQQELSGNPKAEYIDIIIAEI 358 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111 + S + + + I + + ++ E Sbjct: 359 DRVNNIVNEFLKLAKPAVPKRSSCSITALFEEIRVLMESEAFLKNVIIEENFCHLPSVNI 418 Query: 112 -SRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+N+ + ++P+GG++TI + ++ + G E +I Sbjct: 419 DKEQIKQVLINIIQNSFDAMPQGGRLTIHAEPLKTEKKIKIQFNDTGCGM-DKETQGRIF 477 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + L Sbjct: 478 EPFFTTKEQGTGLGLAVSQQIIESHGGQIEIDSEPGVGTTTVIFLP 523 >gi|317121611|ref|YP_004101614.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] gi|315591591|gb|ADU50887.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] Length = 482 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 +A L S++ L S H++ +P+ AI +L+LL + + ++ Sbjct: 229 LAATFNEMLESIETAYRLQQRFVSDASHELRAPLTAILGNLDLLRRRPDLPPEEQAQALE 288 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVS 103 R + + + V + L ++ + Sbjct: 289 EARREAERLSRLVADLLALARADAGVPLVRKAVDVDAVVLDAFQEARRLAKGQQLVLDPL 348 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + ++LL L A P GG++ + +QD+ + + ++ G Sbjct: 349 EPVRIQGDADRIKQLLLILLDNAIKYTPAGGRIVLGLQDAGGDAVLTVADTGVGIPAADL 408 Query: 161 PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + ++ + + ++ L Sbjct: 409 PHVFERFYRADPARSRDPGGTGLGLPIARWIVEQHGGSIAIDSAPGQGTTVTVRLP 464 >gi|228991892|ref|ZP_04151828.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM 12442] gi|228767621|gb|EEM16248.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 72/234 (30%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57 K + ++ +D + S + H+ SP+ +I + L +Q+I S Sbjct: 226 KKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEKMTEDERKRYLQIIEGES 285 Query: 58 MSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 K + + + ++ +K + V + I+ Sbjct: 286 KRMSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDIAVEFDVPSIN 345 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++ N+F + GG + +V++ + + S+ +G E +I Sbjct: 346 VRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEASVVISISDSGIGMEQEEV-ERI 404 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D ++ + V + + + E I L K Sbjct: 405 FDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGEISVESIRGEGTTFRIELPK 458 >gi|16330667|ref|NP_441395.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653159|dbj|BAA18075.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 420 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + ++ L + S + HD +P+ I S LL+E G Q +M Sbjct: 175 ERELSEAKAANKLKSEFVSMLSHDFRNPLNTILLSAGLLEESGDRLSKGQQHNYFNMIRT 234 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S+D L D+ +++ + + + G Sbjct: 235 AIKDLDELLSEVLLLGKTENGQLSCQFESLDLLYFCQDLMRLVNNAQRQPRPIHFHTQGN 294 Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + A P + V IF + G Sbjct: 295 LQQGVWDAHLLRHIICNLLSNAIKYSPSPTPILFDVIAEGKTMIFRVTDQGIGIPPQAMA 354 Query: 165 TQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V A+ + + E + + L Sbjct: 355 ELFNPFFRADNVEGVTGTGLGLAIVQRCANIHGGEVTVESKEGEGSCFAVRLP 407 >gi|209694927|ref|YP_002262856.1| signal transduction protein, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208008879|emb|CAQ79088.1| signal transduction protein, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 675 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLI 53 + + + S L +L L + I H+I +P I + EL+ ++ E + I Sbjct: 429 LKQAQDKLIMSEKLASLGELTAGIAHEINNPTAVILGNAELIKYELGDNASVVSEELDAI 488 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTG 106 + + G D + + D V+ + Sbjct: 489 MEQIDRIRNITRSLLQYSRQGGIQDEVTWQYINPIIEESVTLVRTGAHKRDIDVEFDFEQ 548 Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 ++L+NL M ++ T ++ I ++ G+ Sbjct: 549 PPRVEVNRHHLLQVLVNLQMNGIHAMKAKGKLIIRSRTWQEEEINLGAIIEVEDFGSGM- 607 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I D + D + L + + V + L Sbjct: 608 SHEQLGRIFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIKVRSQLGEGTVFTIYLP 662 >gi|197117052|ref|YP_002137479.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197086412|gb|ACH37683.1| sensor histidine kinase, HAMP domain-containing, 1-2 putative heme-binding sites [Geobacter bemidjiensis Bem] Length = 542 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 16/229 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 + + S L +L L + I H+I +P+ I L+ ++ + Sbjct: 287 TQMQAQLIRSEKLASLGELVAGIAHEINNPLTGILVFASLIQSNKKLDETLRNDIETVIR 346 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------ 109 + +K + + L L DI + I Q + Sbjct: 347 ETKRCAGIVKGLLEFARCSPPQKELHSLSDISEAALTLIQHQILFQDVSIIREYASDLPK 406 Query: 110 --DLSRERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L+N+F+ A ++ + ++ + + NG Sbjct: 407 LLIDANQIEQVLVNMFVNAGHAMLGEGVLHIATGMESDEGAAFIRIVDNGCGISEQNLTK 466 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ R+ + L Sbjct: 467 IFDPFFSTKANKGTGLGLSVSYGIVQEHGGRIDVTSEIGVGTAFTVTLP 515 >gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 456 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 68/223 (30%), Gaps = 24/223 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +E L + D+ + +I S + Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARDKFLDIIDFESERLTRLIND 284 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114 + T ++ + DI +++ + ++ Sbjct: 285 ILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVINTNKDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V +S ++ ++ I ++ NG E ++ + Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVEDNGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + V + K + E Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVEYMKGEIFVESEVGRGTKFII 446 >gi|218886793|ref|YP_002436114.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757747|gb|ACL08646.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 591 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 16/227 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57 N+ L + + A+ L + + H+I +P+ AI LL +++ +++ Sbjct: 342 RTNMEIRLQQAEKMAAIGELSTYVAHEIRNPLFAIGGFANSLLRSPSLDEAARGKVQVIL 401 Query: 58 MSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWT-----G 106 + ++ + L + +R+ V Sbjct: 402 EESRRLDTILKSILNFARPTSPRTGEVDLNLLARQTMELMSMGFDQRRITVDMQLAPDIP 461 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + L+NL A ++P GG++T+ ++ ++ G PE + Sbjct: 462 KAHGDGEMLKQCLINLVKNAQEAMPAGGRLTVRTGMNQQHVHIAVADTGVGI-PPELHDK 520 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I + I + E R+ + ++ L Sbjct: 521 IFSPFFSTKEKGAGIGLAMSRKIIEEMGGRVDLQSQVGKGTTITLHL 567 >gi|254487932|ref|ZP_05101137.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101] gi|214044801|gb|EEB85439.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101] Length = 529 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 64/237 (27%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 M +I ++ A S + H++ SP+ +I ++ LL + + + L+ ++ Sbjct: 274 MLNDITDRMAEERKQADFVSMVSHELRSPLTSIKGAMGLLLSRAAGELSPQAVGLLEIAH 333 Query: 58 MSAIIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102 +A + + S L + + + + Sbjct: 334 RNADRLVLIINDILDMEKISSGRLDFDIKEFDVSEMVHEALRSNAATQQRSGVNIRCIGL 393 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 S ++L+NL A G + + V+ + S++ G + Sbjct: 394 DVPHMIQTDSNRIIQVLINLMSNAAKFSKPGATIEVMVERLASGVRVSVRDEGTGIPEKD 453 Query: 163 KF---TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + E + L Sbjct: 454 HHKIFQRFADMANSDRGAKGGTGLGLSICKAIVEGLGGTISFESREGEGTTFMFTLP 510 >gi|210634652|ref|ZP_03298204.1| hypothetical protein COLSTE_02128 [Collinsella stercoris DSM 13279] gi|210158724|gb|EEA89695.1| hypothetical protein COLSTE_02128 [Collinsella stercoris DSM 13279] Length = 480 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 71/237 (29%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA ++ +L L S + H++ +P+ A+ ++E + + + E ++ + + Sbjct: 235 MAASLERDLKRER---RLTSDVAHELRTPLMAMQATVEAMQDGVYPTDAEHLETVAAETR 291 Query: 59 SAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108 ++ +D + + + ++ + + + Sbjct: 292 RLARLVQQTLDLSRLENHTAPLRLDQVDMVQLTQTIVNNQHQLFHNKGLHLRFVDEMEGR 351 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 I + + ++NL A P G V +SV + + ++ G + Sbjct: 352 SAVIICDADMITQCIINLMSNAMRYTPEDGWVVVSVHGDRKHVMVTVSDTGIGIAKDDL- 410 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + E + + L + Sbjct: 411 ARIFGRFWRADASRAREAGGLGVGLAVTKQIVERHHGFIAVESELEKGTTFTIHLPR 467 >gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp. CCY0110] gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp. CCY0110] Length = 389 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53 + + + ++ L S I H++ +P+ AI +L + +++I Sbjct: 150 LVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSGILQSKNLDEAEIRRALEII 209 Query: 54 RLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ S ++ + R+ + I+ + A + R+Q Sbjct: 210 ERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIEAAIDTLKPAADAKNIRLQAVL 269 Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--- 158 + + +I+ NL A P+ G V I++Q + + G Sbjct: 270 DPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIALQQINSHVEIVVADTGQGISAE 329 Query: 159 --RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + + + + ++ + + V L + + E + + L Sbjct: 330 FLPYVFERFRQANTSMTRSFGGLGLGLAIVRQLVELHGGTVQAESPGEGQGATFTVKLP 388 >gi|95929610|ref|ZP_01312352.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134307|gb|EAT15964.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 532 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61 + + S L L S + H+I +P+ I S +LL E + D +L+ Sbjct: 305 LDQMIQSEKLAEIGRLSSGVAHEINNPLEVISYSAQLLLREESLSDFHQELLTRIGSEVE 364 Query: 62 IRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 F R +D L + I I + V GE + + Sbjct: 365 RLQALTSGLLGFSRSGSMKKSRIDVNEVLEQVLTFIGYQIQRGQHEVVRDYGEVPAIMAD 424 Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + +NL M A ++ G +T++ + + G+ +I + Sbjct: 425 PNQLKQVYINLIMNAVQAMKAPGIITLTTRALPYGVEIDISDTGDGV-EEAIRDKIFEPF 483 Query: 172 VESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y + +++ L E L Sbjct: 484 YTTKPEGEGTGLGLYLCRKIMSDHEGSLNFESTLGEGSRFIIRLP 528 >gi|301309880|ref|ZP_07215819.1| signal transduction histidine-protein kinase AtoS [Bacteroides sp. 20_3] gi|300831454|gb|EFK62085.1| signal transduction histidine-protein kinase AtoS [Bacteroides sp. 20_3] Length = 416 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 70/227 (30%), Gaps = 26/227 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAII 62 L L L + H+I +P+ AI ++++ L + + E++ + + Sbjct: 187 RLATLGELAAGAAHEIRNPLTAIRSTIQYLSKDFSADPVKSEMATELISEVERINKIVQG 246 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAKI 118 L F R + + V+ + ++ + + + + + ++ Sbjct: 247 LLSFARPSALNSSEVNLEQLINQTLLLVHNTLKKQQVEVEFEYFHENTALQADAEQLKQV 306 Query: 119 LLNLFMVAHASLPRGGKVTIS-----------VQDSKNENIFSLKINGNLARFPEKFTQI 167 LN+ + A ++ + + D + + S + +G + I Sbjct: 307 FLNIILNAVEAMSQNPPERSRTLIISIEKGASIDDHSHYLLLSFEDSGKGIGEKDL-DHI 365 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + ++ + + L Sbjct: 366 FNPFFTTKDEGTGLGLAICYGIINRHEGEIEVHSTPGKGTCFTIKLP 412 >gi|262381399|ref|ZP_06074537.1| signal transduction histidine-protein kinase atoS [Bacteroides sp. 2_1_33B] gi|262296576|gb|EEY84506.1| signal transduction histidine-protein kinase atoS [Bacteroides sp. 2_1_33B] Length = 416 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 70/227 (30%), Gaps = 26/227 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAII 62 L L L + H+I +P+ AI ++++ L + + E++ + + Sbjct: 187 RLATLGELAAGAAHEIRNPLTAIRSTIQYLSKDFSADPVKSEMATELISEVERINKIVQG 246 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAKI 118 L F R + + V+ + ++ + + + + + ++ Sbjct: 247 LLSFARPSALNSSEVNLEQLINQTLLLVHNTLKKQQVEVEFEYFHENTALQADAEQLKQV 306 Query: 119 LLNLFMVAHASLPRGGKVTIS-----------VQDSKNENIFSLKINGNLARFPEKFTQI 167 LN+ + A ++ + + D + + S + +G + I Sbjct: 307 FLNIILNAVEAMSQNPPERSRTLIISIEKGASIDDHSHYLLLSFEDSGKGIGEKDL-DHI 365 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + ++ + + L Sbjct: 366 FNPFFTTKDEGTGLGLAICYGIINRHEGEIEVHSTPGKGTCFTIKLP 412 >gi|222053139|ref|YP_002535501.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221562428|gb|ACM18400.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 478 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 23/231 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAII 62 + + M + S + H++ +P+ A+ E L E ++ ++ Sbjct: 248 SERKEIEQMK--DEMISAVSHEMRTPLTAMLGFTEYLLENEVDPSQLKNYLNTIYKETAR 305 Query: 63 R-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKI 109 R+ +D + + D + + V Sbjct: 306 LKELIGNFLDLQQINARMTTYRMHPLDVCLLIKDAAGLFALDYDSGRLVVQCPRNIPPLQ 365 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L NL +VT+ + ++ + +K G PE +I + Sbjct: 366 GDEARLHQVLTNLISNGLKYSQAPARVTVGAEAEGDQVVVWVKDEGCGI-PPELQEKIFE 424 Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + R+ L Sbjct: 425 KFYRIDNTDRRHIGGTGLGLALVREIVAAHGGRVWVTSEVGRGSTFFISLP 475 >gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 679 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 26/234 (11%) Query: 6 CFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSS 57 L L + + + H++ +P+ AI E+L + ++ V + Sbjct: 441 NVALEKANRLKSEFLTTMSHELRTPLNAIIGFAEVLRDEIAGSLSKDQKEYVTDIHSSGH 500 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109 + + L+ TG + IE + V + Sbjct: 501 HLLDMINNILDLSKIETGKMHLQYEEFCIEDAINDTLTIINASANNKGISVHTNIQDNTP 560 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 LS + +IL NL A P GK+TI+V N F + G PE + Sbjct: 561 LLSADKTKFRQILYNLLSNAVKFTPENGKITINVFQKDNSLQFEIVDTGIGI-KPEDKEK 619 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + ++ E +L Sbjct: 620 LFEAFHQADASLTREYEGTGLGLHLTKRLVELHGGKIWAESTFGKGSTFFFILP 673 >gi|302386942|ref|YP_003822764.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] gi|302197570|gb|ADL05141.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] Length = 461 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 17/222 (7%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMR 68 L + + + H++ +P+ A+ + LE + E + ++ ++ + Sbjct: 238 QEKLRKQMTADVAHELRTPLTALGSHLEAMIEGLWDPTPKRLKSCHEEVKRLGTLVEDLG 297 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------WTGEKIDLSRERAKI 118 L I ++ + ++S +++ Sbjct: 298 QLAKIEDENLVLNKTRTDLLEIVRTVSDTMKGEISKKNLTISIGGSPVFAQADKNRFSQV 357 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES- 174 + NL A P GG + I V ++ I + +G E F + + Sbjct: 358 IANLLSNAVKYTPEGGVIGIVVSETDRLGIVKIMDSGIGISEKELPFIFERFYRTDKSRN 417 Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E +++ + + K Sbjct: 418 RKSGGAGIGLAIVKSIVEAHGGTVTAESVEEQGSSFTVSIPK 459 >gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 847 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 61/231 (26%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 +++ + + S + H++ +P+ +I+ EL+ + + + + I + Sbjct: 606 RDVTKETEADRMKEEFVSTVSHELRTPLSSIYGFTELMLNREIDPPKQRKYLTTIHSETG 665 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKI 109 + S + + Sbjct: 666 RLTTLVNDFLDVQRMESSEQRYQMATFDLVQLAAELIDFHDASHTTHELSFEAVGPIMID 725 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + ++L NL A P GG V I +++ +++ G E +++ D Sbjct: 726 ADAEKIKQLLNNLLSNAIKYSPDGGNVAIRIENHDGFAEITIRDQGIGI-PQEAMSKLFD 784 Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E + Sbjct: 785 KFYRVDNSETRKIGGTGLGLSICKEIVKHHNGTIDVESTIGAGSTFTIRFP 835 >gi|296331522|ref|ZP_06873993.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674175|ref|YP_003865847.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151335|gb|EFG92213.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412419|gb|ADM37538.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 428 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 13/223 (5%) Query: 4 NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60 N S L + L + I H++ +P+ ++ L+++ + +I Sbjct: 202 NERLARESQKLSITSELAAGIAHEVRNPLTSVSGFLQIMKTQYPDRKGYFDIIFSEIKRI 261 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTGEKIDL 111 + L + L + L +I + + I ++K + + Sbjct: 262 DLVLSELLLLAKPQAVTFKMHQLNEILKQVTTLLDTNAILSNIVIEKNFKETDGCIINGD 321 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +N+ ++P+GG VTIS + + + S+K GN EK QI Sbjct: 322 ENQLKQVFINIIKNGIEAMPKGGVVTISTAKTASHAVISVKDEGNGM-PQEKLKQIGKPF 380 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+ L E V +L Sbjct: 381 YSTKEKGTGLGLAICLRILKEHDGELKIESEAGKGSVFQVVLP 423 >gi|37523131|ref|NP_926508.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214134|dbj|BAC91503.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 1225 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 ++ L +L + L + H+ +P+ I S +LL + ++ Sbjct: 982 QQSQQMALQKEYELNELKSRLIAMTSHEFRTPLSTIILSTQLLSSDSPHQSAQKRLKQQQ 1041 Query: 58 MSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + +D + + ++ R Sbjct: 1042 RIERAIEQMTDLLDGILSIGQAEIDQVQIRRVPLDLESFCRQLVEEMQAAPGGAHRPAFE 1101 Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 G+ + + +IL NL A V + + + +F++ G Sbjct: 1102 SAGQCRGANLDAVMLRQILSNLLTNALKYSAPDSTVRLQLACRDGQAVFTVVDEGIGIAV 1161 Query: 161 PEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + I + V L K RL E + L Sbjct: 1162 -EDQERLFEPFYRGRNVANIPGSGLGLAIVRRLVELLKGRLAFESRPQQGTTFTVALP 1218 >gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 421 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I L S + H++ +P+ AI +LE+L DE ++++++ + Sbjct: 185 QDISEQHEVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILVDEPREAEQMLKIAVSN 244 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S + + L +G + + L DI +++ + + + E + + Sbjct: 245 SERLLRLVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRMEISYSTLDV 304 Query: 116 A------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL + G KV I + E I ++K G + Sbjct: 305 HNSKILADEETIIQVLTNLLSNSVKFSHAGTKVEIYTKMGDKEIIIAVKDYGKGIPADKL 364 Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + +V + + +++ ++ E D L Sbjct: 365 KTIFERFEQVDVSDARQNGGTGLGLAICKNIVEKHQGKIWIESTLDSGSTFYFTLP 420 >gi|323703868|ref|ZP_08115502.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531156|gb|EGB21061.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 558 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 K ++S LVA+ + + + H++ SP+ + + +++ E + I Sbjct: 316 KMEAQLVNSAKLVAIGEMAAGVAHELNSPMTVMIGTAQMMQRDLPKDDPRHEWLDDIISC 375 Query: 57 SMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL 111 M L F R + + + +I I + ++ + Sbjct: 376 GMRCKKIIQNLLSFSRQGQFSVAETNVNEQVEKVLSLIHYQINRNNIDIRKKLDPSLPHI 435 Query: 112 SRERAKILLNLFM---VAHASLPRGG-------KVTISVQDSKNENIFSLKINGNLARFP 161 ++ + A +L Q K+ + +K NG P Sbjct: 436 MANGHQLQQVIINLLLNARDALEETSGQKSIVITTFTRKQQDKDWVVVEVKDNGQGI-AP 494 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + S + + +A + + E +L Sbjct: 495 ENLQKIFNPFYTSKEASKGTGLGLSVSLGIAQSHGGTIEVESELGVGSTFRLVLP 549 >gi|86157753|ref|YP_464538.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774264|gb|ABC81101.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 375 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 74/242 (30%), Gaps = 29/242 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +++ + L A+ + + + H+I +P+ A L +L+ E + +++ Sbjct: 133 KRDLASRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRIQKLEAERQGPLLEP 192 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQV 102 + L + + + + ++ VI + V ++ Sbjct: 193 LTLVKDEIRRLDHILEDFLQFARPREFVRKAIEVAPVITKVVDLLGGEAERRGVRLEREL 252 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153 ++L+NL + A + R + D+ + Sbjct: 253 EPVPPVAGDEERLRQVLVNLCLNALEAVDARGLVRVSCRPAPADVDHPDAAPMVDILVDD 312 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +G P++ +I + + + V + ++ + E + + L Sbjct: 313 DGPGV-SPDQRDRIFEPFFTTKARGSGLGLSIVHAIVTQHGGTIRIEDSPEGGARFTLRL 371 Query: 214 EK 215 + Sbjct: 372 PR 373 >gi|323703118|ref|ZP_08114772.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] gi|323531895|gb|EGB21780.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] Length = 687 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 74/221 (33%), Gaps = 12/221 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + L S+ L+ + + I H++ +P+ + L+L+ + + +L Sbjct: 465 TQEEMQRLDSLGLLGKMAAGIAHEVRNPLTTVRGFLQLMKGKEDSTKHKEYFQLMIDELD 524 Query: 62 I----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + + +A + V+++ + Sbjct: 525 RANSIITEYLSLARKNKTELESNNLNTIIKDIEPLITADAIHMAKNIEVKLTDIPNLLLN 584 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +E +++LNL ++P GG +T+ + + ++K G PE ++ Sbjct: 585 RKEINQLILNLVRNGLEAMPEGGTLTVKTFKDGEQVVLAVKDQGPGI-KPEVIKKLGTPF 643 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 V + + + +A+ + + E + Sbjct: 644 VTTKENGTGLGLAVCYGIANRHNATIDVETGP-AGTTFNVR 683 >gi|228994391|ref|ZP_04154270.1| hypothetical protein bpmyx0001_50980 [Bacillus pseudomycoides DSM 12442] gi|228765352|gb|EEM14027.1| hypothetical protein bpmyx0001_50980 [Bacillus pseudomycoides DSM 12442] Length = 577 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 K S L A+ L + + H++ +P+ I ++L +D+ L+ Sbjct: 334 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINQEDQDKYFDLMLSEIE 393 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTG---EKID 110 L L I + + I + ++ + Sbjct: 394 RIEAILHEFLSIAKTDVISTEKKNLCSILKNVVSLINTKAIMTNIQIDLHIESKELMIDC 453 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG+++I V+ S+ E ++ G E+ ++ + Sbjct: 454 CENQLKQVFINILQNSIEAMPNGGEISIYVKKSEREEVTINMVDEGVGI-PEERIKRLGE 512 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ R+ ++ L Sbjct: 513 PFYSTKEKGTGIGLMLSYKIIESHQGRISIMSEVGIGTSVTIYLP 557 >gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 67/236 (28%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ LSS+ + S + H+I +P+ +I ++L + ++ + ++ + Sbjct: 213 AREEALQLSSIK--STFLSNMSHEIRTPLNSIIGFSDILRDTRLDKDQTDYVQTIQRCSD 270 Query: 62 IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L +++ + + I + + V + + Sbjct: 271 SLLHIINDVLDISKIENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVDIDESIP 330 Query: 108 KID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKF 164 S +IL+NL A +G + + ++ + G R E Sbjct: 331 AFALGDSHRLRQILMNLVGNAVKFTDKGRVCISLQRQPGSGHYVWKVSDTGRGIRL-ENM 389 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + T + L + E L Sbjct: 390 SKLFRSFSQEDVSISRTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFTLP 445 >gi|227891714|ref|ZP_04009519.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC 11741] gi|227866517|gb|EEJ73938.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC 11741] gi|300213969|gb|ADJ78385.1| Sensor protein [Lactobacillus salivarius CECT 5713] Length = 627 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 66/230 (28%), Gaps = 32/230 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ + +E L++ E +++ + + I + + Sbjct: 385 QFVSNVSHELRTPLTSMRSYIEALNDGAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLS 444 Query: 72 GY-------------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L + D + ++ +T + + Sbjct: 445 RMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVE 504 Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 505 LDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDR 564 Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + ++ L Sbjct: 565 FFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614 >gi|90961026|ref|YP_534942.1| two-component sensor kinase yycG [Lactobacillus salivarius UCC118] gi|90820220|gb|ABD98859.1| Two-component sensor kinase yycG [Lactobacillus salivarius UCC118] Length = 621 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 66/230 (28%), Gaps = 32/230 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ + +E L++ E +++ + + I + + Sbjct: 379 QFVSNVSHELRTPLTSMRSYIEALNDGAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLS 438 Query: 72 GY-------------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L + D + ++ +T + + Sbjct: 439 RMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVE 498 Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 499 LDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDR 558 Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + ++ L Sbjct: 559 FFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 608 >gi|322384703|ref|ZP_08058371.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150402|gb|EFX43895.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 638 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 12/216 (5%) Query: 10 SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 S L + + + H+I +P+ I L+LL + + ++ + Sbjct: 404 KSEKLSVAGQMAAGVAHEIRNPLFIISGFLQLLKKNPGNTSYVDVMITEVERINGIVDDF 463 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKIDLSRERAKIL 119 L + DI + + V+ + + ++L Sbjct: 464 LLLSRPGDMKMESQKIEDIVEETMRLFQSNAEDIGIEIVLVKEADLPPVFCEPNQLKQVL 523 Query: 120 LNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +N+ ++ +GG++TI + K+ + G PE +I + + + Sbjct: 524 INMIKNGMEAMSQGGRITIELTYPLKDYLQIRICDQGEGI-DPEALERIGEPFYTTKENG 582 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +L D LL Sbjct: 583 TGLGLMVSCRIIEYHHGKLNVYSKKDEGSTFEILLP 618 >gi|78224470|ref|YP_386217.1| GAF sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78195725|gb|ABB33492.1| GAF sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 608 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 57/232 (24%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + + L L A+ + + I H+I +P+ ++ L + E Q L + Sbjct: 375 LHETQERLLQGEKLAAIGQMAAGIAHEIKNPLVSVGGFAGRLKRRFPADTEEWQYADLIT 434 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKI 109 + ++ I Q+IED +V+ Sbjct: 435 REVQHLETMLTDILFFSKKTTICYSRCSINQIIEDALSVVALPIEEKGIKVEKILASRLP 494 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLARFPE 162 + + +I + + + D + G Sbjct: 495 SVLGDYQQIRHVFINLFSNANDVMEPGGVLEIESLPAQIDGSRAVSVKVSDTGAGILLEH 554 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + + + + + + + + ++ Sbjct: 555 IHT-LFSPFFTTKEKGTGLGLAIAHKIITAHGGTITVKNRETGGAEFTVVIP 605 >gi|89897062|ref|YP_520549.1| hypothetical protein DSY4316 [Desulfitobacterium hafniense Y51] gi|219667067|ref|YP_002457502.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|89336510|dbj|BAE86105.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537327|gb|ACL19066.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 503 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 19/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55 + + + + + + H++ +P+ +IH LE+L + + + Sbjct: 269 LESSFTAEKEAKEQMRRFVADASHELRTPLTSIHGFLEVLLRGAMNQPDKLQKSLTSMYA 328 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGE 107 S ++ + L S L Q+ + ++ ++ Sbjct: 329 ESERMKKLIQDLLLLAKLDRSPYLEKSEKDIGVLILEMEPQLRMLAEEREIQLDLAPEEL 388 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLA---RFPEK 163 + +++LNLF A + S+ +++ NG P Sbjct: 389 VPIDVDKMKQVILNLFHNAVQHTDPDKGLIQISLKSEASGVELTVQDNGPGIPEEHLPHL 448 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + L + L E L K Sbjct: 449 FERFYRSDSSRTRKYGGAGLGLAITHSLVELHGGTLRVESKVGEGSRFIVGLPK 502 >gi|315186291|gb|EFU20052.1| multi-sensor signal transduction histidine kinase [Spirochaeta thermophila DSM 6578] Length = 466 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 22/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 S + H++ +PI + LE L D+ ++ + ++ + Sbjct: 249 FVSSVSHELKTPITTVLGYLETLKDLPPDDEATRTRFLETALSHTHRLHQIIEDLLLLSR 308 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNL 122 A + +++ + + + + L NL Sbjct: 309 IEQAEAPVPLERAPLAPLIRRAMELLRQTRGETHPLTLEGPEDLALPLNPGLMVQALYNL 368 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176 A P G V + + + + + ++ G PE +I + + Sbjct: 369 IHNAVTHTPPGTPVVVRWRGTGSSVLIQVEDRGPGI-PPEALPRIFERFYRVDASRARST 427 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + L Sbjct: 428 GGTGLGLSIVKHIVQAHRGEVSVASTPGEGTTFTIRLP 465 >gi|322420721|ref|YP_004199944.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127108|gb|ADW14668.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 402 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + ++ L + + H+I +P+ ++ E L +++ + + Sbjct: 164 QELQLVQAEKMSSIGVLAAGVAHEINNPLASVAGYAEALLRRFRDEQWLSEDERFQVFKK 223 Query: 62 IRLKFMRLAFGYTGSVD---------------------SLIGLGDIEQVIEDFIAVDKRV 100 M+ + G +D L + Sbjct: 224 YLEVIMKETYRCKGIIDSLLTFSRKPEGCVGRVNLNLVLQEVLELVRYKSRYEQVKIDFS 283 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +I +NL + AH ++ G + IS + + +K +G Sbjct: 284 KQEDLPPVYAEDSGLRQIFMNLLLNAHQAISGPGVIEISTFCADGMGVARIKDSGCGIEP 343 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + QI + + + L + + E + + Sbjct: 344 QQL-DQIWNPFFTTKTVGQGLGLGLAITYDLVKKQGGEIQVESQLGEGSTFTVRMP 398 >gi|163748871|ref|ZP_02156123.1| sensor histidine kinase [Shewanella benthica KT99] gi|161331645|gb|EDQ02450.1| sensor histidine kinase [Shewanella benthica KT99] Length = 691 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLI 53 + + +++ L AL L + I H+I +P I ++ELL ++ E ++L+ Sbjct: 438 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLKSELGDNAAIVEEEIELV 497 Query: 54 RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + + + + V +++ Sbjct: 498 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIIEEMLVLVRHSIQEKEVILSQELNA 557 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ D ++ G Sbjct: 558 SYPIEVNRPQLLQVLINLVVNAAHAMDEQGRIWIRTYDWVHMDEPIGVKIEIEDEGRGI- 616 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E ++I D + D + + + + + L Sbjct: 617 PQELLSRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVTSTVGKGTLFTIGL 670 >gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 848 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 54/235 (22%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + H++ +P+ I EL+ + +DE + + S+ Sbjct: 607 LDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAADDETRENADIIEKSS 666 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + I + RV Sbjct: 667 RHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSRVAGDC 726 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +IL NL A G + F + G Sbjct: 727 PATIQADPLRLRQILHNLLSNAVKFTETGEVALSVDLQPDHLV-FKVSDTGAGIPEAMLH 785 Query: 165 T-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + VD + + + L + E L Sbjct: 786 AIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGVESTVGKGTTFHFTLP 840 >gi|261419856|ref|YP_003253538.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319766670|ref|YP_004132171.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261376313|gb|ACX79056.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317111536|gb|ADU94028.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 430 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 +A+ + M +V+ + + I H+I +P+ + ++LL E+ +++ Sbjct: 193 LARAELMKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEE 252 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111 A ++ I + + V S + Sbjct: 253 LERAEAIIRDYLTFAKPAPKETEPIDVAVELQKVLQMITPMAHMHSIHVSSSLEHGVVIG 312 Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + + NL + ++P GG + ++ ++ + ++ NG E+ + + Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNGVGM-TKEQVRRFGEP 371 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E L+ L Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWAIESAVQKGTTLTVTLP 415 >gi|118581752|ref|YP_903002.1| integral membrane sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504462|gb|ABL00945.1| integral membrane sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 480 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 2 AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQ 51 + + L + L V L S I H+I +P+ I +++ L E + E+ + Sbjct: 233 REALEKRLYEAEHLSRVGQLASGIAHEIRNPLNYISLAIDHLKEEMLPHCAGAQRAEMEE 292 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVS 103 L + Y + L + + R++ Sbjct: 293 LADKIKEEVRRANYMVVNFMSYGRPLKLRHALVPYSDVLAKALPVLHDRLTEQRIRLEQR 352 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + L ++ + + A ++P GG +T+ + ++ + G R Sbjct: 353 IPDDFPPLWVDQEMLRTCILNLVGNAVQAMPGGGLITLGAERDHDQVRLTFSDQGKGIRA 412 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + E+ + + + LL Sbjct: 413 EDLG-KIFQPYFTTREVGIGLGLAITERIVREHGGSIQVDSTLGSGTTFTLLLP 465 >gi|225851081|ref|YP_002731315.1| sensor histidine kinase/response regulator [Persephonella marina EX-H1] gi|225645164|gb|ACO03350.1| sensor histidine kinase/response regulator [Persephonella marina EX-H1] Length = 678 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQL 52 K L + + L + + HDI +P+ AI E L + + + ++ Sbjct: 447 EKLEAQLLQTEKHAVIGKLAAGLSHDIKNPLTAISAYAFTVKKRGEKLKDKTLINLGEKI 506 Query: 53 IRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTG 106 S L + + ++ VD L ++ Sbjct: 507 ENNSRRAEDIINKLLNYAKPSYYKEKKVDLREVLNTSIDFSIPASKRKNIKINKRLEKGV 566 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ +NL + A ++ G + IS++ + N + ++ +G + Sbjct: 567 FVYGDPGSLQQVFINLIINAAEAMNYSGNIWISLRKNGNRAVIKIRDSGEGIPDS-IKDE 625 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + V + ++++ + E + L Sbjct: 626 IFDPFFTTKEKGTGLGLSVVKRIVNDHRGEIDFESKEGEGTEFIIKLP 673 >gi|291483991|dbj|BAI85066.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 427 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 12/222 (5%) Query: 4 NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60 N S L + L + I H++ +P+ ++ L+++ + + +I Sbjct: 202 NERLARESQKLSITSELAAGIAHEVRNPLTSVSGFLQIMKTQYPDRKDYFDIIFSEIKRI 261 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------GEKIDLS 112 + L + LA + + ++QV + Sbjct: 262 DLVLSELLLAKPQAITFKTHQLNEILKQVTTLLDTNAILSNIVIEKNFKETDGCMINGDE 321 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ +N+ ++P+GG VTIS + + + S+K GN EK QI Sbjct: 322 NQLKQVFINIIKNGIEAMPKGGVVTISTAKTASHAVISVKDEGNGM-PQEKLKQIGKPFY 380 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+ L E V +L Sbjct: 381 STKEKGTGLGLPICLRILKEHDGELKIESEAGKGSVFQVVLP 422 >gi|219849102|ref|YP_002463535.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543361|gb|ACL25099.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 475 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 76/235 (32%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + L S L A+ L + + H+I +P+ A NSL L+++ + + + + Sbjct: 231 LNAAQAQLLQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQ 290 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWT 105 + MR + + + + + + + V ++ Sbjct: 291 QELSRIARIITRMRDFYRPSRGELTNANINALLRETLELVTTHLRHSHVTVHTQLAPDLP 350 Query: 106 GEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + + ++ LN+ + A ++P ++ S + S+ G Sbjct: 351 -PIVAHADQLRQVFLNIILNACDAMPGGGELTVRSELIASRPEEPMTLAVSISDTGVGI- 408 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + + + + + ++ R+L + + LL Sbjct: 409 DPEHIPHLFEPFYTTKPHGTGLGLAISAHIITQHGGRILVDSQPGVGTTFTILLP 463 >gi|99078347|ref|YP_611605.1| histidine kinase [Ruegeria sp. TM1040] gi|99035485|gb|ABF62343.1| histidine kinase [Ruegeria sp. TM1040] Length = 887 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 70/233 (30%), Gaps = 21/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRL 55 + + + L AL L + + H++ +P+ I ++L+ + + + I Sbjct: 637 LQQQRDAAHQAEKLSALGELLAGVAHELNNPLSIIVGYAQMLEGRLQDKVLSKRVDRIAE 696 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKID 110 ++ + ++ + L DI + + + Sbjct: 697 AADRSARIVRAFLAMARQRPTKIEPCSLNDIVLAALDVAGYGMRSSGTEILSELDDDLPL 756 Query: 111 LSRERAKILLNLFM---VAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPE 162 +S + +++ A +L + S ++N+++ ++ NG Sbjct: 757 VSGDADQLVQVFSNLIINAEQALAPLGQAGRLTIRSSFDPAQNQSVVEIRDNGPGIPAA- 815 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + + I + + + +L E + L Sbjct: 816 IRARIFEPFFTTKDVGKGTGIGLAFSHRIVDAHGGQLDLETTEGEGTRFFVRL 868 >gi|226225606|ref|YP_002759712.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226088797|dbj|BAH37242.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 876 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + +VA+ L + + H+I +P+ I +LL E + D+ + + L Sbjct: 644 RQLEEQMRHTEKMVAVGELVAGVAHEINNPLTGISAFAQLLLEETLTDDQRESVALIKKE 703 Query: 60 A-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDL 111 L F R G VD LG + ++ VQ++ + Sbjct: 704 TDRAKGVIHDLLLFARNTERAAGPVDINDALGQVVRLRAYPLRNGGVDVQLALDPSAPRV 763 Query: 112 SRERA---KILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQ 166 S + ++LLN+ A ++ T++ Q + + G E + Sbjct: 764 SGDAQKLQQVLLNIIGNAEYAMRDRPHRVLTLTTQGHGDTVSITATDTGKGM-PEEVRRR 822 Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + E + D ++ +L Sbjct: 823 IFEPFFTTKPNGVGTGLGLSVSYGIVRAHGGTVSVESVPDVGTTVTIVLP 872 >gi|320107191|ref|YP_004182781.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319925712|gb|ADV82787.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 985 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 24/233 (10%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54 + L + LL + + H++ +P+ I + ++L + +D + Q Sbjct: 727 EAQLTQAEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLRKQTSDDPRLSMVLDKITQQTF 786 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110 +S L F R VD L + ++E K + Sbjct: 787 RASEIVNGLLNFSRKTSSEFVPVDMNAVLKETVALLEHQFRTAKVTVQADLAATLPCVDG 846 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +++LNL + A ++ ++ + + + S+ G+ +I Sbjct: 847 SQGKLQQVVLNLMLNAKDAMADSTTPHLTVATRATDTHVLLSISDKGSGIDPAHLH-KIY 905 Query: 169 DGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + E+ ++ + Sbjct: 906 DPFFTTKNAPREGQHKGTGLGLAVSYGIVQEHGGKIRVDSAVGQGTTFHLEFP 958 >gi|308175220|ref|YP_003921925.1| sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307608084|emb|CBI44455.1| sensor histidine kinase RBAM_032040 [Bacillus amyloliquefaciens DSM 7] gi|328555192|gb|AEB25684.1| sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328913553|gb|AEB65149.1| Alkaline phosphatase synthesis sensor protein phoR [Bacillus amyloliquefaciens LL3] Length = 353 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 55/222 (24%), Gaps = 17/222 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----------- 58 L S + H+I +P+ ++ LL + + E Sbjct: 124 EMEKLKQEFISNVSHEIQTPLTSLKGYAHLLKKPDLSYEERGRYLHIIETETERLSKISE 183 Query: 59 ---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + +D + + E + + Sbjct: 184 NLLKLTALERQTEPIQKKPFRIDKQLRRTILTCEPEWSAKQIEFLIDLQESYVYGDEALL 243 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172 +++ +NL A GG++++ + D + NG + F + + Sbjct: 244 SQVWMNLIHNAVKFTGEGGRISVKITDLPEAAAIEIADNGIGMEPEQAERVFERFYKADK 303 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + E + +L Sbjct: 304 ARNAGGSGLGLSIAKKIAELHGGSIEVESKRGEGTLFRVILP 345 >gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] Length = 928 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 55/229 (24%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI LL E + E + ++ + Sbjct: 701 AKEKAEEADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVETEDQGEKREYSKMVEENNE 758 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + ++ + Sbjct: 759 LLLQLISDILDLSKIEAGTFDFKIRDLDVNTLCGDVQRSMKLRVKPGVELLFEPTLPSCV 818 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++ N A G Q + G PE +I Sbjct: 819 IVSDPNRLHQVVANFVNNAIKFTTTGYIRIGYDQPDAKHLRIYVSDTGIGI-APEACEKI 877 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + S + + + + + + +L Sbjct: 878 FDRFIKLNSFVQGTGLGLSISKSIIEQLGGTIGVDSELGKGSTFWFILP 926 >gi|254475691|ref|ZP_05089077.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp. R11] gi|214029934|gb|EEB70769.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp. R11] Length = 346 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 15/239 (6%), Positives = 62/239 (25%), Gaps = 27/239 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 +I + + + + H++ +P+ A+ +E L + + +++++ + Sbjct: 108 DITEREQASQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDAAARERFLEIMQGEAN 167 Query: 59 SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + + + + Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAQGKEVSLALEVPQTPT 227 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLA--- 158 ++ + ++ + ++ GG + NG Sbjct: 228 LVTGDPDQLQQVFTNLVENAIKYGGNQVLVRLSLSDRDPAVRSAAVRVQVIDNGAGIDPI 287 Query: 159 RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P + + + V + + ++ R+ E + +L + Sbjct: 288 HLPRLTERFYRVDTHRSREQGGTGLGLAIVKHIVNRHRGRMRVESSAGKGTTFTVILPR 346 >gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 752 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 61/238 (25%), Gaps = 27/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK L + + H++ +P+ I ELL G+ E+++ R + Sbjct: 353 AKEEAERADRAKSAFL--ATMSHELRTPLNGIIGMSELLMSSGLSGELVEYARTIQTAGE 410 Query: 62 IRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSW--------T 105 L + + + V + + + Sbjct: 411 NLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKSLRFVLEVASEVP 470 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 + +++L NL A RG V + + +F ++ G Sbjct: 471 AVVVSDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEAEEGRAKIVFQVRDTGIGIPRE 530 Query: 162 E---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + + L R+ E + + + Sbjct: 531 ELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVESEEGKGSCFTVRIP 588 >gi|306833966|ref|ZP_07467090.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338] gi|304423967|gb|EFM27109.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338] Length = 450 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMIRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + + D + + + + I L + Sbjct: 271 IDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 ++L N+ A P GGK+T+S++ ++ + I S+ G + F + + Sbjct: 331 TQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 391 ARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434 >gi|288905746|ref|YP_003430968.1| essential two-component sensor histidine kinase [Streptococcus gallolyticus UCN34] gi|306831844|ref|ZP_07465000.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978779|ref|YP_004288495.1| two-component sensor histidine kinase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732472|emb|CBI14044.1| conserved essential two-component sensor histidine kinase [Streptococcus gallolyticus UCN34] gi|304426042|gb|EFM29158.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178707|emb|CBZ48751.1| two-component sensor histidine kinase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 450 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMIRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + + D + + + + I L + Sbjct: 271 IDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 ++L N+ A P GGK+T+S++ ++ + I S+ G + F + + Sbjct: 331 TQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 391 ARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434 >gi|212639387|ref|YP_002315907.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212560867|gb|ACJ33922.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 569 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 15/225 (6%) Query: 3 KNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRL 55 + + + S L + ++ H+I +P+ IH L E L E E + L+ Sbjct: 344 EELTKRMHQSEKLALMGEMAAKAAHEIRNPLAVIHGFLAFMNENLHERDREQYHIPLLLQ 403 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK-I 109 ++ M L + V + I Q + A + RV V Sbjct: 404 EIDRINAIVEDMLLIAKPSAPVMKEAYMETIVQDVLSLFQQTLEAKNIRVHVRLDRVPLS 463 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++L NL + ++ + G D + +G+ I + Sbjct: 464 IDPKQMMQVLYNLLYNSIEAVGKDG-TICLYSDVGETYNMYVYDSGSGI-PTHIQETIFE 521 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + + L Sbjct: 522 PFITTKSSGTGLGLTIVKRIIENHGGTIALHDSSEQGTTFVIKLP 566 >gi|269926212|ref|YP_003322835.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269789872|gb|ACZ42013.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 477 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 20/228 (8%), Positives = 57/228 (25%), Gaps = 19/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 K + L + + H++ +P+ I + LL E ++ I + Sbjct: 250 KQLRETLDAER---RFVADASHELRTPLTTILGNAGLLLKVPNMSPEDRQESLEQIYEEA 306 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109 + + ++ + R+ E + Sbjct: 307 DRMRRLVSDLLTLARADAGFRLKQEPVKVQPVVESAVREMEHRATDRQLRIDKISDVEVV 366 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQ 166 +++L L A + + V+ ++ + + G P F + Sbjct: 367 GDKDALKQLVLILLDNAIKYTRNQDSIQVEVEKDDSQAVIRVADTGIGISQEHLPHIFER 426 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + ++ + + L Sbjct: 427 FYRADTSRSSDGTGLGLSIAKWIVEQHCGSISVASEIGKGSIFEVKLP 474 >gi|254465485|ref|ZP_05078896.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] gi|206686393|gb|EDZ46875.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] Length = 654 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 74/230 (32%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + + + S L A+ + + + H+I +P+ I +L+L +E +LI Sbjct: 420 LERTTERLIVSEKLAAVGEITASVAHEINNPVAVIQGNLDLARTVLGRHAEPVEEEFRLI 479 Query: 54 RLSSMSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + + + ++ ++ Sbjct: 480 DDQVYRISVIVSKLLQFARPEEYSGAAGLISPAEVVADCLVLTRHQIEATGIEAEAHLAS 539 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 TG+ E ++++NL + A ++P GG++T++ +D+ + + + + G Sbjct: 540 TGQVRISRTELQQVIVNLILNAVQAMPGGGRLTLTAEDTPDGVLLAAEDTGTGIPADLLN 599 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L R+ + L Sbjct: 600 RIFDPFFTTKQAQGTGLGLSISHQLVSRAGGRITVQSEPGRGTRFEIFLP 649 >gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 595 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 66/226 (29%), Gaps = 23/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIR--- 63 + + + + H++ +P+ ++ E L + + E +++I S Sbjct: 363 EQIRSEFVANVSHELKTPVTSVKGFAETLLDGAMYDEATLREFLKIIYDESDRLHRLISD 422 Query: 64 --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + L VD + + + ++ + Sbjct: 423 ILDLSRIEQHRILLKMEQLNVVDVVAETVQTMRKRIEKKQLELVLPQKRHVMMEADKDRL 482 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +ILLNL A A P G++ IS+ + +NE + G + +I + Sbjct: 483 RQILLNLVTNAIAYTPDKGRIEISLIERENELDLIVSDTGIGISEKDLP-RIFERFYRVD 541 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ E + L + Sbjct: 542 KARSRQSGGTGLGLAIVKHLVESYHGKIRVESEEGKGSTFIVTLPR 587 >gi|313673765|ref|YP_004051876.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312940521|gb|ADR19713.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 372 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61 + ++ L+ + + I HDI +P+G+I LL + E L+ Sbjct: 148 EKEQRRNENLKLMGEMAAGIAHDIRNPLGSIEIFATLLRRDLEGDREKENLLNSIIKGVK 207 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------WTGEKIDL 111 + +T + I +++D I K + + Sbjct: 208 TINNTISNILLFTKDIRLNKKNVYIADIVDDVILFMKHLMNDKKIVFQNRIGDNDQIYCD 267 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++++N+ A ++P+GGK+TI +++ + ++ NG +I Sbjct: 268 IELIKQVVMNIIHNAIDAVPQGGKITIYSEETSTNSSIFIEDNGPGISPNFI-DKIFLPF 326 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + P + L K Sbjct: 327 HSKKAKGTGLGLSIVYKIIKAHNGNIYPISKPGQ-TIFKITLPK 369 >gi|307706667|ref|ZP_07643473.1| two-component sensor histidine kinase [Streptococcus mitis SK321] gi|307617911|gb|EFN97072.1| two-component sensor histidine kinase [Streptococcus mitis SK321] Length = 449 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSWTGEKIDLSRERAK 117 + + LI I + + R + + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T++++ + ++ I S+ G + +I D Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + I + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHNGFIWAKSIYGKGSTFTIVLP 432 >gi|307708757|ref|ZP_07645219.1| sensor protein YycG [Streptococcus mitis NCTC 12261] gi|307615123|gb|EFN94334.1| sensor protein YycG [Streptococcus mitis NCTC 12261] Length = 452 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSWTGEKIDLSRERAK 117 + + LI I + + R + + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T++++ + ++ I S+ G + +I D Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + I + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHNGFIWAKSIYGKGSTFTIVLP 432 >gi|224371240|ref|YP_002605404.1| sensory box hisitidine kinase [Desulfobacterium autotrophicum HRM2] gi|223693957|gb|ACN17240.1| sensory box hisitidine kinase [Desulfobacterium autotrophicum HRM2] Length = 659 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 15/219 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLE--------LLDEVGIEDEVMQLIRLSSMS 59 S L A+ L + + H+I +P+ +I + ++ D ++ + + + Sbjct: 434 RSRRLAAVGKLAAGVAHEIRNPLSSIKGFATYFRERYKGVAEDRETADIMIHEVERLNRA 493 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 L+F + VD + +++E+ +A ++ E Sbjct: 494 ITQLLEFAKPVPVVARKVDVKDLVAHSLKLVENDLAARGIGVEKTIPRDQKEVTIDPDRL 553 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 +ILLNL++ A ++ GG + + V K + G+ + +I D + Sbjct: 554 NQILLNLYLNAIQAMDNGGTLGVKVTTEKGCLFVEVSDTGSGIAVSD-MEKIFDPYYTTR 612 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + E + H + Sbjct: 613 ARGTGLGLAMVHRNLETMGADIRVESREGHGTTFFLKIP 651 >gi|253701131|ref|YP_003022320.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775981|gb|ACT18562.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 571 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 66/247 (26%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + K + + A+ L + I HD + + +I ++ + E + M+ + Sbjct: 181 LRKTEKELRQAQKMEAVGTLAAGIAHDFNNILTSILGFTDMVLHKIPEGEMGRREMEQVF 240 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +S+ A ++ + + + I + + V + E + Sbjct: 241 VSAQRAADLVRQILSFSRRNDQERQPVHVSGIIEDTCKLLRSSLPATVEFVTEFFVSEDD 300 Query: 115 R---------AKILLNLFMVAHASLPRGGKVTISVQD----------------SKNENIF 149 ++L+NL A ++ G S++ Sbjct: 301 DKVLADPIQLHQVLMNLCTNAAHAMQPDGGTLTITLTAAEAGSPGLTSLPVLTSRDYIRV 360 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 ++ G +I D + + + V + + + Sbjct: 361 AVSDTGRGIEPL-VLERIFDPYFTTKPAGEGTGLGLAVVQGIVKNHGGAITVHSEPGKGT 419 Query: 208 VLSALLE 214 L Sbjct: 420 CFEVFLP 426 >gi|322383982|ref|ZP_08057712.1| sporulation-specific ATP-dependent protein histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151459|gb|EFX44646.1| sporulation-specific ATP-dependent protein histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 441 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 21/222 (9%), Positives = 68/222 (30%), Gaps = 19/222 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIRLK 65 + L L + + I H+I +P+ +I ++LL + + A + Sbjct: 207 NDKLAMLGKIAAAIAHEIRNPLTSIRGFIQLLQPELSKLGKEDYGKIIIDEIDRANDIIY 266 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKILL 120 + T V I + + + + +++++ + + + ++ Sbjct: 267 EFLNSSKPTKPVKQKILISSLLKEVVMLFESEALLRGCQIKITEADSDLWVRVDTKQLKQ 326 Query: 121 NLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ + G + I + + + ++ NG ++ D Sbjct: 327 VFSNLVKNAVEILTASGEGQQGMIEIKAKKKEKQAFIQVRDNGPGMDEHTLS-RLFDPFF 385 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ E V + L Sbjct: 386 TTKEEGTGLGLSVSYNIIKNHGGTIVAESEKGRGTVFNIELP 427 >gi|259419178|ref|ZP_05743095.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259345400|gb|EEW57254.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 825 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ L + + H++ +P+ I SL++L+++G + + ++ +S Sbjct: 336 LRRARDDALAGEQAKDRLLTVMSHEMRTPLTGILGSLDVLEDLGPTADQQRYMQAMRVSG 395 Query: 61 IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 + L + D + I + + + + Sbjct: 396 ELLLHHVNDVLQLSRLEAGADPDPPHPFDLDELVSGIGESQQAIARRNNNELTVFCSLGG 455 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + R ++LLNL A G ++ + FS+ G + Sbjct: 456 SSGVEGRCRYVQQVLLNLIGNALKFTHDGAVSVDVMRTEGDLVEFSVADTGKGIAAEDLD 515 Query: 165 TQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + E D + + + Sbjct: 516 RIFDDFTMLDPSYKRGSEGTGLGLAISRRLVRLMGGEITCESEPDEGSLFTFTIP 570 >gi|55821168|ref|YP_139610.1| sensor histidine kinase [Streptococcus thermophilus LMG 18311] gi|55737153|gb|AAV60795.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK Spy) [Streptococcus thermophilus LMG 18311] Length = 446 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + +E+ + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMITDLLALSR 269 Query: 69 LAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + T + + E + + I + + Sbjct: 270 IDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+S++ + + I S+ G + F + + Sbjct: 330 TQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433 >gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU144] Length = 565 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ D + +I S Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + I + D Q + + ++ Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 455 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + A+++ NL A KV + V + N+ ++ G + F + Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + + L Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVL 561 >gi|225863918|ref|YP_002749296.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|225785678|gb|ACO25895.1| sensor histidine kinase [Bacillus cereus 03BB102] Length = 353 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E I+ S + Sbjct: 300 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESIEGQGTEFSVRIP 352 >gi|170690557|ref|ZP_02881724.1| integral membrane sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] gi|170144992|gb|EDT13153.1| integral membrane sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] Length = 585 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 71/264 (26%), Gaps = 50/264 (18%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISP------------------IGAIHNS---- 36 +A+ L S L ++ L + + H+I +P + A+ Sbjct: 312 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYMADLLTALAAYERSE 371 Query: 37 LELLDEVGIEDEVMQLIRLSS-----------------MSAIIRLKFMRLAFGYTGSVDS 79 EL+ E ++ ++ ++ + Sbjct: 372 AELIAESRAALIELKREIDIDYLRSDIPTLLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 431 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEK------IDLSRERAKILLNLFMVAHASLPRG 133 L + + + + + E + + ++ +NL M A S+ Sbjct: 432 WANLESNLDTTINIVWNELKYKAELKREFGAIPELECIPSQLNQVFMNLLMNAAQSIEGH 491 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191 G + + + ++ +G PE +I D + + + Sbjct: 492 GHIVVRTGHDETSVWIEVEDSGQGI-KPEHRDRIFDPFFTTKPVGTGTGLGLSISYGIVR 550 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + R+ H +L K Sbjct: 551 KQGGRIEVRSEVGHGSTFRVVLPK 574 >gi|251799903|ref|YP_003014634.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247547529|gb|ACT04548.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 753 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 71/225 (31%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 + S L V L + + H++ +P+ + ++L+ + ++ + ++ Sbjct: 528 KRTEDILRRSEKLSVVGQLAAGVAHEVRNPLTTLRGFVQLMQKDSRLDKSYLNIMLSELD 587 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------ID 110 + + + L I I + + + Sbjct: 588 RINLIVSEFLVFAKPQADRYQEADLYAIMNDIIVLLDSEANIHNVQMITCLEPGVPSLRC 647 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S + ++L+N+ ++P GG++T+ ++S+ + +K G + ++ + Sbjct: 648 ESNQLKQVLVNVMKNGMEAMPDGGELTLELARESEQNILIRIKDQGVGIPEEDL-ARLGE 706 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +K + + + Sbjct: 707 PFFTRKAEGNGLGLMISQQIIQHHKGTIQYSSKPGEGTCVEIRIP 751 >gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 631 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 61/231 (26%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +++ + + L + + + H+I +P+ AI +L ++ E +I ++ Sbjct: 398 LSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPVEMREYADIIETNT 457 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 + + Y S+D + +IEQ + + Sbjct: 458 DLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPG 517 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N A G + F + G E+ Sbjct: 518 CLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCGM-SNEQCE 576 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + ++ + + L Sbjct: 577 HVFERFVKYNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLP 627 >gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 631 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 61/231 (26%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +++ + + L + + + H+I +P+ AI +L ++ E +I ++ Sbjct: 398 LSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPVEMREYADIIETNT 457 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 + + Y S+D + +IEQ + + Sbjct: 458 DLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPG 517 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N A G + F + G E+ Sbjct: 518 CLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCGM-SNEQCE 576 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + ++ + + L Sbjct: 577 HVFERFVKYNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLP 627 >gi|322372854|ref|ZP_08047390.1| sensory box histidine kinase VicK [Streptococcus sp. C150] gi|321277896|gb|EFX54965.1| sensory box histidine kinase VicK [Streptococcus sp. C150] Length = 446 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + +E+ + L Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMISDLLALSH 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115 + T + I + D + + I + + Sbjct: 270 IDNKSTHLDVEMTNFTAFMTYILNRFDQIKSQENNTGKDYEIIRDYPVNSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+S++ + + I S+ G + F + + Sbjct: 330 TQVVDNILNNAIKYSPDGGKITVSMKTTDAQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 390 ARSRAQGGTGLGLSIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 433 >gi|295704118|ref|YP_003597193.1| sporulation kinase KinC [Bacillus megaterium DSM 319] gi|294801777|gb|ADF38843.1| sporulation kinase KinC [Bacillus megaterium DSM 319] Length = 427 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 72/224 (32%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55 +A+ + + +V L + I H+I +P+ +I ++L+ E + ++ + Sbjct: 193 LAEALLIKKEKLSVVGELAAGIAHEIRNPLTSIKGFVQLMKETDRSAIGYANIMLDELER 252 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDL 111 + L + + + + + + + Sbjct: 253 INGIVSEMLLLSKPESEHFRVFSLTEAVKYVMSLTSHEALLKNIDFLYDEQTNSASVYGN 312 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDG 170 ++LLN+F A ++ R G + I+++ N ++ G ++ I + Sbjct: 313 KNHLIQVLLNVFKNAIEAMDRPGNIYITIKTAQDNHIFIEVRDEGVGI-SKDRLEHIGEP 371 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + H++ L E + ++ L Sbjct: 372 FFTLKEKGMGLGLTISSKIIHDHHGTLQIESEQNKGTIVKIRLP 415 >gi|294498797|ref|YP_003562497.1| sporulation kinase KinC [Bacillus megaterium QM B1551] gi|294348734|gb|ADE69063.1| sporulation kinase KinC [Bacillus megaterium QM B1551] Length = 430 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 72/224 (32%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55 +A+ + + +V L + I H+I +P+ +I ++L+ E + ++ + Sbjct: 193 LAEALLIKKEKLSVVGELAAGIAHEIRNPLTSIKGFVQLMKETDRSAIGYANIMLDELER 252 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDL 111 + L + + + + + + + Sbjct: 253 INGIVSEMLLLSKPESEHFRVFSLTEAVKYVMSLTSHEALLKNIDFLYDEQTNNASVYGN 312 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDG 170 ++LLN+F A ++ R G + I+++ N ++ G ++ I + Sbjct: 313 KNHLIQVLLNVFKNAIEAMDRPGNIYITIKTAQDNHIFIEVRDEGVGI-SKDRLEHIGEP 371 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + H++ L E + ++ L Sbjct: 372 FFTLKEKGMGLGLTISSKIIHDHHGTLQIESEQNKGTIVKIRLP 415 >gi|159899976|ref|YP_001546223.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893015|gb|ABX06095.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 544 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 75/228 (32%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIR 54 + + + + L + + + + H+I +P+ I + LEL+ + + Q + Sbjct: 299 LRETQGRLVEAEKLSGMGRMAASLAHEINNPLAIIRSGLELVAQQHTPGTALGDLVQGLD 358 Query: 55 LSSMSAIIRLKFMRLAFGYTG---SVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGE 107 L + + D + + + + + Sbjct: 359 EEVARIARLLYTLVNFYQPNNDGVPPDLNHLIISLMHITKPQLDKANVKLYQELATDLPA 418 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 S ++L+NL A ++P GGK+TI K + +++ +G PE +I Sbjct: 419 PNISSDACKQVLINLVRNAIDAMPDGGKLTIRTAHQKGQIFVNVEDSGIGI-PPEHRERI 477 Query: 168 VDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + + E I D + + Sbjct: 478 FEPFFSTKGVTGTGLGLSVVYGILQQVGGAISVESIVDKGSNFTLRIP 525 >gi|108759384|ref|YP_633922.1| pilin regulatory protein PilS [Myxococcus xanthus DK 1622] gi|950652|gb|AAB40880.1| sensor protein [Myxococcus xanthus DK 1622] gi|108463264|gb|ABF88449.1| pilin regulatory protein PilS [Myxococcus xanthus DK 1622] Length = 525 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 71/226 (31%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + L +L L +++ H++ +P+ ++ S +LL + +D +L + Sbjct: 300 LRRMEDDLKRADRLASLGALSAQLAHELRNPLASMRGSAQLLAQDARDDVAQKLTNILMR 359 Query: 59 SAIIRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + + D+ +V V V Sbjct: 360 ESDRLARLVEEFLRFARPPVPSLRRVPLASLVTETMDMLRVDPLARDVRVEVTAPEPLPV 419 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL + G+V +++ S+NE + +G + E + Sbjct: 420 SVDPDQLRQVLINLVRNGFLAAGPRGEVKVALTRSENEARIRIWDSG-GSITEEMMGHLF 478 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + D L Sbjct: 479 EPFFTTRDGGTGLGLSTAHSIIRAHGGSIRVRSNRDEGTEFVVGLP 524 >gi|332703497|ref|ZP_08423585.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio africanus str. Walvis Bay] gi|332553646|gb|EGJ50690.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio africanus str. Walvis Bay] Length = 586 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57 + +++ + L A+ L + + H+I +P+ A+ + L ++ + R Sbjct: 362 LERSLA---EAEKLAAVGRLAAGVAHEIRNPLSALRGFAQFFLKKLQGVQPDEEYARTMV 418 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL 111 A K + D + ED ++ + + Sbjct: 419 READRLNKVITDMLFLARPQSLTPQDVDTTTLFEDLRRLLEGEAAKAGAELRFEARTPSV 478 Query: 112 SRERA---KILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++LLNL M + A+LP G +V ++ + + N+ + S+ NG P+ Sbjct: 479 HADSDGLKQVLLNLIMNSLAALPETGGQVIVTAEPAGNDMLLSVADNGRG-FSPDAREHA 537 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L ++ RL E + V+ L Sbjct: 538 LEPFFTTRAQGTGLGLAIAHKLVQDHGGRLEIESEEGRGAVVRVFLP 584 >gi|320547234|ref|ZP_08041527.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812] gi|320448122|gb|EFW88872.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812] Length = 450 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 31/240 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + L S I H++ +P+ ++ + LE LDE +++++ + Sbjct: 200 MEQEKEDRERR-----LFVSNISHELRTPLTSVKSYLEALDEGALKEDIAPSFIKISLDE 254 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQV 102 L R+ + D + + Sbjct: 255 TNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTVAGKQYEIVR 314 Query: 103 SWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + I L + ++L N+ A P GGK+T+S++ ++ + I S+ G Sbjct: 315 DYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIP 374 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + ++K + + + +L Sbjct: 375 KKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434 >gi|328951187|ref|YP_004368522.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] gi|328451511|gb|AEB12412.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] Length = 477 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 + + + LS ++ + H++ +PI AI + L + E +++ Sbjct: 236 LVRALNRMLSRLEAAFRSQTRFLADASHELRTPITAILGHVGYLLRRTSLTEAQRESLEI 295 Query: 53 IRLSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 IR + + + V+ L ++ + V+ T Sbjct: 296 IRREAERMTKLVTDLLDLAGSEGGWRLEIRPVNLASLLNELAEEYRPAFNGRLVVEAPST 355 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 ++ NL A + R + + + + +G Sbjct: 356 VWVAGDDSRLHQVFANLVNNAIKAGARTITLRARSL--GEKVVVQVVDDGPGIPPEHLPY 413 Query: 164 -FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + + + E V S L + Sbjct: 414 LFERFYRVDKARDRAAGGSGLGLAIVKAIVEAHGGEVWVESELGKGAVFSVSLRR 468 >gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 467 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 22/229 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 M++ I L + + I HD+ +P+ I +E + + + + LI Sbjct: 235 MSQQIARANQ---LRRQMTADIAHDLRTPLTVIAGYIESMRDGVLQPTPQRLDLIYQEIE 291 Query: 59 SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + +R+ + + ++V + Sbjct: 292 RLQKMVNDLRMLSQADAGELNLHPQPTQPLALLKRAAHLFQHHAEQAGINLKVEASETLP 351 Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++L NL A GG++T+ + + + G E Sbjct: 352 AILVDEDRMMQVLDNLISNALRYTSAGGEITLRAKQDGKQVRLQVADTGTGIPSEELPRI 411 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 F + + + + V L ++ E ++ Sbjct: 412 FERFHRVDPSRHSESGGSGLGLAIVRALVEAQGGKVSAESELGKGTTIT 460 >gi|307709234|ref|ZP_07645693.1| two-component sensor histidine kinase [Streptococcus mitis SK564] gi|307620180|gb|EFN99297.1| two-component sensor histidine kinase [Streptococcus mitis SK564] Length = 449 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +Q+ + + + + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEDKKYELVRDYPITSVWIEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T++++ + ++ I S+ G + +I D Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 747 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 22/245 (8%), Positives = 54/245 (22%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL---DEVGIEDEV 49 M K NL + A + + + H++ +P+ I ++L + D Sbjct: 487 MQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLTTIIGFSDVLLKGKAGDLNDSQ 546 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVD 97 + + + + + + V Sbjct: 547 EKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEYIAVHELFENLKSNVYPIASKKG 606 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKIN 154 ++ + + K+ L+ + G D N FS+ + Sbjct: 607 LTIETKINQRVDYIYADELKLKHILYNLLYNSVKFTDDGSITIKLDLDENNNYKFSVVDS 666 Query: 155 GNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + + V L + + E Sbjct: 667 GIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLVKRLVELHGGNIWVESEVGTGSKF 726 Query: 210 SALLE 214 + + Sbjct: 727 TFTIP 731 >gi|217968805|ref|YP_002354039.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|217506132|gb|ACK53143.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 619 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 66/219 (30%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSA----IIR 63 LL + I H+I +P+G++ LE ++ D+ ++ + Sbjct: 399 GLLAAGIAHEIHNPLGSLRLGLEAMERRLRGRPERDDRIDDYLRTMDEEIDRCLQVTQRL 458 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKIDLSRERAKIL 119 L R VD L D ++ + + + ++ Sbjct: 459 LMLSRPPQARVQPVDVNPVLADTSCLLAYDAENRQIEHILEADKAAPRVWADDADLRMLM 518 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS- 178 +NL AH ++P GG+VT+ +E + ++ G + + + D Sbjct: 519 INLVQNAHHAMPSGGQVTLRSHIIGDEVLIEVEDTGVGIPEDDVP-HLFEPFFSRRADGE 577 Query: 179 --HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + R+ E L + Sbjct: 578 PGTGLGLSICRSIVDHYGGRIAVESRPGEGARFRVSLPR 616 >gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437] Length = 595 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 26/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 + + H++ +P+ I + LE L +E + M++ R + + + Sbjct: 366 FVANVSHELRTPLTTIKSYLEALDEGGAMEEPELASRFMRVTRQEAERMTRLIHDLLQLS 425 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKIL 119 R L+ D +D ++ + ++ R++ ++L Sbjct: 426 RLDAEKVRFRKAPLPLESVLVDAADRFAFQCRQKEIDFQLSLEEDLPRVYADRDQIDQVL 485 Query: 120 LNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 NL A P + + S ++ G + +I + Sbjct: 486 DNLLSNAVKYTPEGKKISLTARKCSDGYVEVAVADRGIGIPKKDL-ERIFERFYRVDKAR 544 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + E + L Sbjct: 545 SRSLGGTGLGLSIAREIVRAHGGSIQLESNYGKGTTVRFTLP 586 >gi|153005239|ref|YP_001379564.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028812|gb|ABS26580.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 418 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 64/222 (28%), Gaps = 9/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 ++ + D +A + + + H+I +P+G I ++EL+ E + E ++ + Sbjct: 191 RRSDAERAARGDALARMGAMVAHEIRNPLGVIRGAVELVRERSAGALVPRDREALEDVLG 250 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLSRE 114 + + I + +A V V + + + Sbjct: 251 EVERLRRLTDDFLDLAREPSIAPAEVDAAAIAEEAARALARSHPRVDVRLALPALPVHAD 310 Query: 115 RAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 A++ L + + G V I + ++ +G P ++ + Sbjct: 311 PARLRQVLSNLLQNAAEAGAGCVEIRGAARDGNVLLEVRDDGRGI-DPAVRARLFEPFAT 369 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + L L + Sbjct: 370 GRKDGAGLGLAIARRIVERHGGELRLVARPGPGAAFEVRLPR 411 >gi|118577251|ref|YP_899491.1| integral membrane sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504756|gb|ABL01238.1| integral membrane sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 372 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61 S L L + + + H+I +P+G+I + E+L + E+ + I + Sbjct: 139 EEQLRRSEKLSTLGEMAAVLAHEIRNPLGSIRGTAEILKDDYKPENPKYEFIEIQIRETE 198 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRER 115 + + + + + +E ++++ + ++ + Sbjct: 199 RLNRVVEDFLHMARPQPTDMQSCQVLDELEMISTLLLSGARERQITLELKSPPFPVTIQA 258 Query: 116 -----AKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVD 169 + LN+ + A + P GG+V IS + G ++ + Sbjct: 259 DGDKLRQAFLNIIINALQATPIGGRVLISTTVHASTTCEIQFHDTGPGMDAA-TMERMFE 317 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L+ E + L Sbjct: 318 PFFTTKPGGTGLGLVITKKIIETHGGTLMVESEVGKGTTVIVKLP 362 >gi|297568387|ref|YP_003689731.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924302|gb|ADH85112.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 619 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 + L S L + + + H+I +P+ I S+E+L + I ++ Sbjct: 374 QTEEALLRSRQLAVVGQMAAGLAHEIKNPLAGIKVSMEVLSNELDISQQDKEIFHRIVSE 433 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRV 100 ++ L + R VD L + V +R Sbjct: 434 VQRIENLLRNLLNYARPPKPEFAPVDLNAQLESCLKNSEMLLKAPEHKVNGRRRVRFERH 493 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLAR 159 + + +I LNL + A ++ S + + + NG Sbjct: 494 LADGLPLIRADASQVQQIFLNLLLNAIEAISDEGVVAVTSKTSEDGKVVVEVSDNGKGM- 552 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + L + + Sbjct: 553 TAETCARIFQPFYSNKHRGSGLGLAICKRLVELHGGEIQVVSSPGEGSTFIVAFP 607 >gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 463 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 61/234 (26%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLS 56 MA+++ + + H++ +P+ I E+L + ++++ +I Sbjct: 224 MAESLGLVEEQRK---EFLANVSHELRTPLSYIRGYTEMLQDETLDEKTRAQYYDIIENE 280 Query: 57 SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + L + + I V + + Sbjct: 281 TNRLQRLVTDLLDLAQLERDSYPMTKEPVVYSQVLEDVLYRLEPIARAKGVTIESDLDFD 340 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164 + +++ NL A G + + I ++ G + Sbjct: 341 LIILGDHDRLEQVIGNLLDNALRYTDAGKTIHVKTFAETEYAITEIRDEGRGIPKEDLDK 400 Query: 165 --TQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ L ++ L Sbjct: 401 LTERFYRVNKSRTRKDGGTGLGLAIAKHIIERHEGSLHFSSEVGQGTTVTVGLP 454 >gi|55823081|ref|YP_141522.1| sensor histidine kinase [Streptococcus thermophilus CNRZ1066] gi|13324643|gb|AAK18825.1|AF327739_2 Hpk2 [Streptococcus thermophilus] gi|55739066|gb|AAV62707.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK Spy) [Streptococcus thermophilus CNRZ1066] Length = 446 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + +E+ + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMISDLLALSR 269 Query: 69 LAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + T + + E + + I + + Sbjct: 270 IDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+S++ + + I S+ G + F + + Sbjct: 330 TQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433 >gi|116627885|ref|YP_820504.1| sensor histidine kinase [Streptococcus thermophilus LMD-9] gi|116101162|gb|ABJ66308.1| Signal transduction histidine kinase [Streptococcus thermophilus LMD-9] gi|312278466|gb|ADQ63123.1| Sensor protein [Streptococcus thermophilus ND03] Length = 446 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + +E+ + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMISDLLALSR 269 Query: 69 LAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + T + + E + + I + + Sbjct: 270 IDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+S++ + + I S+ G + F + + Sbjct: 330 TQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433 >gi|254388464|ref|ZP_05003699.1| integral membrane sensor signal transduction histidine kinase [Streptomyces clavuligerus ATCC 27064] gi|197702186|gb|EDY47998.1| integral membrane sensor signal transduction histidine kinase [Streptomyces clavuligerus ATCC 27064] Length = 363 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 57/215 (26%), Gaps = 19/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70 L I H++ +P+ + +E L + E++ + M + ++ Sbjct: 136 LTGDIAHELRTPLANLRGYVEALQDGYVEPTPELLDSLHEEVMLQQRIVDDLQDLALAEA 195 Query: 71 ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLF 123 + VD L + +++ NL Sbjct: 196 GALTYHRVDVDLRELLETCRTAHHARAEAATVTLTTAPPATPVLVHADPDRLRQVVGNLL 255 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST--IDS 178 A + P GG VT+++ I + G P F + + Sbjct: 256 TNAIRATPPGGTVTLALVPHGELAIIHVHDTGTGISEDALPHLFDRFWRADAARGRQTGG 315 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + ++ + E + L Sbjct: 316 SGLGLAIVRQIVRDHGGTVGVESTVGVGTTFTVTL 350 >gi|168701206|ref|ZP_02733483.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 590 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 17/230 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 + + L + L A+ L + + HD + + I S LLD + Sbjct: 234 RRRLEEQLRNAAKLEAVGRLAAGVAHDFNNLLTVIGGSAALLDGPAGRGPNAARLVGEVR 293 Query: 57 ------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R +D D+ ++ + V E + Sbjct: 294 FAAERGQWLVRQLLTFARPQAAGREPLDLGRVASDLAPILARVVGPAIETDVDTPAEPVF 353 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R + LLNL A ++P GG++ + V+ + ++ G+ PE +I Sbjct: 354 VLADRGELEQALLNLATNARDAMPGGGRLALRVRAGADWVRVAVTDTGSGM-PPEVRERI 412 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V +A R+ E L + Sbjct: 413 FEPFFTTKGPDVGTGLGLTTVKQVAERCGGRIAVESAPGRGTTFDIDLPR 462 >gi|301299923|ref|ZP_07206154.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852468|gb|EFK80121.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 627 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 64/230 (27%), Gaps = 32/230 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ + +E L++ E +++ + + I + + Sbjct: 385 QFVSNVSHELRTPLTSMRSYIEALNDGAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLS 444 Query: 72 GY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------TGEKI 109 V+ + I + + DK Sbjct: 445 RMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRNFTKRDLWVE 504 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 505 LDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDR 564 Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + ++ L Sbjct: 565 FFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614 >gi|37523244|ref|NP_926621.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214247|dbj|BAC91616.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 518 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 60/205 (29%), Gaps = 12/205 (5%) Query: 22 ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGY 73 + H++ +P+ I LEL+ D+ E M ++ + R + Sbjct: 304 VSHELRTPLTIIRGHLELIGDDPHERAETMHIVHDELGRMHRFVESLLLLDRLERHDGLH 363 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPR 132 ++ + + + +G ++ R+ + +LNL A Sbjct: 364 LEPLEVDALTRECFAKARGLGRRQWHLPSAASGCRVHADRQCLTQAVLNLAHNAVKFTTH 423 Query: 133 GGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 ++ I + +G F G+ + + + V + Sbjct: 424 QDRIAIGSSLVDGRVHLWVSDSGPGVPLEAQGRIFECFERGSCHRQTEGNGLGLAIVRSI 483 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 A + + + H + +L Sbjct: 484 ALAHGGEVRLQSTPGHGATFTLVLP 508 >gi|262198725|ref|YP_003269934.1| signal transduction histidine kinase, nitrogen specific, NtrB [Haliangium ochraceum DSM 14365] gi|262082072|gb|ACY18041.1| signal transduction histidine kinase, nitrogen specific, NtrB [Haliangium ochraceum DSM 14365] Length = 752 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 29/233 (12%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAII 62 L A+ L + + H+I +P+GAI + +LL + E ++ +++ Sbjct: 478 ERDRLAAIGELSAGLAHEIRNPLGAIKGAAQLLVGPDGEPAPPSAESVEFVQIIIEEVDR 537 Query: 63 RLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + Q++ + ++V +S Sbjct: 538 LNNVVSQFLDYARATGSDTHKHRPISMNEVIDKTVQILRRDAPDNVAIRVHVDELLPPVS 597 Query: 113 RERA---KILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFP 161 + A ++ LNL A ++ + S + + +G Sbjct: 598 GDAATLLQVFLNLGQNAIQAMAESGGVLDILTTRRRRSRLGYGSFAEARFRDSGVGI-AS 656 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + E+ + + S L Sbjct: 657 DVVDKLFIPFFTTREKGTGLGLPISERIVSEHGGTIEVRANPEGGSTFSVFLP 709 >gi|148993836|ref|ZP_01823238.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP9-BS68] gi|168489054|ref|ZP_02713253.1| sensor protein YycG [Streptococcus pneumoniae SP195] gi|194398370|ref|YP_002037827.1| histidine kinase [Streptococcus pneumoniae G54] gi|147927661|gb|EDK78686.1| sensory box sensor histidine kinase [Streptococcus pneumoniae SP9-BS68] gi|183572355|gb|EDT92883.1| sensor protein YycG [Streptococcus pneumoniae SP195] gi|194358037|gb|ACF56485.1| histidine kinase TCS02 [Streptococcus pneumoniae G54] gi|332073564|gb|EGI84043.1| sensory box protein [Streptococcus pneumoniae GA17570] Length = 449 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 73/223 (32%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + + L +++ + + I + + + Sbjct: 271 IDNATSLLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T+ ++ ++++ I S+ +G + +I D Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|95930019|ref|ZP_01312759.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133988|gb|EAT15647.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 431 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56 + + + L AL + + + H+I +P+G I +S +LL + + L+ + Sbjct: 200 LEEAEENLRRTDRLAALGEMSAGLAHEIRNPLGIIASSAQLLQNHINPTDSGQLDLLDVI 259 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWT 105 + + + + + +E +I+ + + V T Sbjct: 260 REESTRLNDLVTTFLRFGRPGEPQLKSYQLENLIDKTVEQLRPVAEQHQVALTFSPAHPT 319 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++LLNL + A + G V I N+ + NG E Sbjct: 320 TTVYVDADMIQQLLLNLLLNAIEACSEQGNVVIHALKKDNQAHIIVTDNGEGI-AKEVLP 378 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + +A + + H L Sbjct: 379 TIFNPFFTTKDGGTGLGLATAHNIAQSHGGDIHVTSQPGHGSRFVVTLP 427 >gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 623 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI ELL + + + + + Sbjct: 393 LREAKKRAEESNKLKSAFLANMSHEIRTPLNAIVGFSELLADESRHETRREYTDIILRNN 452 Query: 61 IIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + + D + D ++ + + Sbjct: 453 TLLLQIISDVLDLARIESGRTDIERTQFDARDLCREVADSLRLQRRPGVELRVEEGLPEF 512 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + A++L N A +G + F ++ G PE + Sbjct: 513 PVTEYRKGLAQVLNNFTRNALKFTEKGSVTIGFRRIPG-HIRFYVRDTGIGI-APEDRER 570 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V ++ + +A + + + + + Sbjct: 571 IFERFVKLDTFTQGTGLGLSICKSIAEQLGGSVGVDSVAGEGSCFRIDIP 620 >gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 681 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 58/235 (24%), Gaps = 26/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ S + SR+ H++ +P+ AI ++LD ++ +RL S Sbjct: 291 ARDEAERASRAK--SDFVSRMSHELRTPLNAILGFAQVLDREPLQASHQDYVRLIMRSGQ 348 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L+ + + L I IA + Sbjct: 349 HLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVAQRAADKGLDFIPKVAEDLP 408 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I ++L+NL A G +FS++ G Sbjct: 409 SHVIGDPTRLRQVLINLTANAVKFTEAGSVELAIDAH-DQRLLFSIRDTGIGMDEAALG- 466 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + L Sbjct: 467 RLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDSKPGAGSCFRFSLP 521 >gi|228925838|ref|ZP_04088922.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833853|gb|EEM79406.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 463 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454 >gi|229173309|ref|ZP_04300853.1| hypothetical protein bcere0006_24100 [Bacillus cereus MM3] gi|228610003|gb|EEK67281.1| hypothetical protein bcere0006_24100 [Bacillus cereus MM3] Length = 432 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 202 RSKMIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIEHILEELH 261 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 R + + I ++ + ++ I ++ Sbjct: 262 RAQGIIDDYLTFAKPASEKSDHISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 321 Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + NL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 322 QHFQQCFLNLIKNGIEAMPNGGTLHISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 380 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ L K Sbjct: 381 STKTKGTGLGTMVAVKIIETMQGSLKIRSVVNKGTTLTITLPK 423 >gi|261408623|ref|YP_003244864.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261285086|gb|ACX67057.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 455 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 19/237 (8%), Positives = 59/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + L + + H++ SP+ +I + L + + + Sbjct: 213 LARSFEDMMHELQQLEQLRREFVTNVSHEVQSPLTSISGYAQALKQVNLSDDERRRYLDI 272 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWT 105 I + + V + +Q Sbjct: 273 IIAEAKRMSKMSDSLLKLSLLESQSQQPGLSTLSLDEQIRRVIVALQPQWAARSIQFELD 332 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++ + ++ N+ + GG + +S++ N + G + Sbjct: 333 LLPVKVTADHDQLNQVWTNIIGNSIKFSKDGGVINVSIKQDMNNVTVRISDTGIGISLED 392 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + E L Sbjct: 393 QKRIFERFFKTDRSRSRKYEGSGMGLAIVKQIVSLHQGDIRVESEPGQGATFIVTLP 449 >gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] Length = 456 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 24/221 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I +E L + D+ + +I S + Sbjct: 225 EKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARDKFLDIIDFESERLTRLIND 284 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRE 114 + T + + DI +++ + Sbjct: 285 ILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGLVINTNKDR 344 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++++NL P GG V +S ++ ++ I +K NG E ++ + Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVKDNGIGI-SKENIPRLFERFYRV 403 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + V + K + E Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEIGKGTKF 444 >gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909] Length = 565 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ D + +I S Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + I + D Q + + ++ Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAQNKRIKIQSEIEKDVIIEAH 455 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + A+++ NL A KV + V + N+ ++ G + F + Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + + L Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVL 561 >gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 695 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 61/241 (25%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61 ++ + L + S I H++ +P+ +I ELL E + ++ A Sbjct: 447 SDVTREREADRLKSEFLSIISHELRTPLTSIMGYTELLLAREFSPAERREFVQTVYNEAN 506 Query: 62 IRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +V + D+ + + I+ + + Sbjct: 507 HLYQIVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQLNNQISGKHTMLIDIPPHLPP 566 Query: 111 LSRER---AKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSLKINGNLA 158 + +R ++L+NL A P ++ G Sbjct: 567 VYADRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVELPPDHPRGKFVRVAVSDQGIGI 626 Query: 159 RFPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + I + L + R+ E + L Sbjct: 627 APEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNKGSTFYFTL 686 Query: 214 E 214 Sbjct: 687 P 687 >gi|323706156|ref|ZP_08117724.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534449|gb|EGB24232.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 565 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 58/218 (26%), Gaps = 22/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +P+ I + E L + + + + +I +K + L Sbjct: 348 FVANVSHELRTPLTTIKSYTETLLNDGVDDEMRNRFLYIIDKEVDRMTRLVKDLLLLSRM 407 Query: 74 TGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + L I+ + + +++LN+ Sbjct: 408 DSNGKLNLTEANLNEFVEEVLYKIKIEAQKKNQKLLFCAGEEKRNVNIDKDKMEQVILNI 467 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176 + GG V + + + + NG + +I + + Sbjct: 468 VSNSIKYTNPGGYVRVFTKYLDDYAYIVVNDNGIGIPKKDLP-RIFERFYRVDKGRSREL 526 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E ++ L+ Sbjct: 527 GGTGLGLAIAKEIVTAHGGEINIESEIGVGTTVTVKLK 564 >gi|320352886|ref|YP_004194225.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121388|gb|ADW16934.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1494 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + ++ L + L A +L + I H+ +P+ I L+ L + E E++ Sbjct: 1244 LQESQKQVLHAEKLSAIGMLSASIAHEFNNPLQGIMTVLKGLKKWVTLEDEERELVDAAI 1303 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTG 106 S ++ ++ + +L+ + V +R Sbjct: 1304 GESERMKHLIRSLQEFNRPSSGRKTLMNIHQALDSLLLLQTNVFTKKQIRVERDYADDLP 1363 Query: 107 EKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ LNL A + R G V I ++ ++K +G PE Sbjct: 1364 AIEAVPDQIKQVFLNLLTNACDACGRRNGVVAIRTWREGDKVAVAVKDSGGGI-APENLD 1422 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + H + + E + +L Sbjct: 1423 RIFQPFFSTKEAVKGTGLGLSVSHGIVHAHGGEIRVESRLGKGATFTVVLP 1473 >gi|260892545|ref|YP_003238642.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260864686|gb|ACX51792.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 467 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 19/237 (8%), Positives = 65/237 (27%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A+ + + ++ + + H++ +P+ +I ++ + + + + Sbjct: 223 LARTLDAMAAQLEAIDRERQEFLAYVSHELRTPLTSIRGFVQGMLDGTIPPEKQQSYLAR 282 Query: 53 IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + + + + T L + ++ + V + Sbjct: 283 VFSETERLRRLVDDLLMLVRLRSGQFTFNWQGTDLRRVLTTVEEVMSPLALEKGVQLEFR 342 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL A P GG+V + + + + G Sbjct: 343 TQGELPVYADEGRLVQVFMNLVDNAIKFSPPGGRVLVEAEKTDGLLRVQVTDEGPGIPPE 402 Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + L+ ++ + + + LL Sbjct: 403 ELPRIFDSFYSGTARSRSELGTGLGLAISRLIVEKHGGHISVRNRPEGGCTFTVLLP 459 >gi|322418457|ref|YP_004197680.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124844|gb|ADW12404.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 369 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 64/225 (28%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 + L AL L + + H+I +P+ +I + E+L E E ++++ S Sbjct: 143 EEQLRRAERLSALGELSAILAHEIRNPLASIRGTAEILMEEGTPAPRRGEFLEILVKESD 202 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTG----EKIDL 111 ++ + + + + A V++ + + Sbjct: 203 RLNRVVEDFLRMARPEPADKRECDINEELGNMVTLLSAQARGSNVRLELSCGALPRLVAD 262 Query: 112 SRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + +N+ + A + P GG+V S G + I + Sbjct: 263 PEKLRQAFMNIMLNAIQASPEGGRVLVATSCDPKAGSVEIRFCDEGVGI-AADAIAHIFE 321 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L E +L Sbjct: 322 PFFTTKGSGTGLGLPITRKIIEGHGGTLEVESGPGRGATFKVILP 366 >gi|89893291|ref|YP_516778.1| hypothetical protein DSY0545 [Desulfitobacterium hafniense Y51] gi|89332739|dbj|BAE82334.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 457 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 75/244 (30%), Gaps = 31/244 (12%) Query: 1 MAKNICFN---LSSMDLVA--LLCSRICHDIISPIGAIHNSLELL------------DEV 43 + K + + + LL + I H+I +P+ I S+E L ++ Sbjct: 209 LKKKRELESALRQADKMASVGLLAAGIAHEINNPMATIGLSVEELRYELQRMNSAQGEKD 268 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIA 95 D + LI + + + + ++ ++ ++ Sbjct: 269 QDIDRYLDLIARQADRCSQITQNLLDFSRQERNQNNAYDFYNLNELVQKALELNHYMLQK 328 Query: 96 VDKRVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152 +V+ G + + +++ NL A ++ +GG + + Q+ + + Sbjct: 329 NQVQVRYDLDGAVPLIWGDGPGIQQVIFNLLCNAAQAMKQGGALKLVTQNEADCVCLQVM 388 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 NG + ++ + + + L + ++ + ++ Sbjct: 389 DNGEGISNEDLK-RVFEPFFTTKPPGLGTGLGLAVSYGLIKQAGGTIVMDSRLGEGTTVT 447 Query: 211 ALLE 214 L Sbjct: 448 VKLP 451 >gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 685 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 60/238 (25%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 +A + L + + H++ +P+ AI +LL + ++ Sbjct: 290 LANERQARSEAERASRLKDEFVATLSHELRTPLNAIVGWAQLLLRDASDPARVEKGLQVI 349 Query: 58 MSAIIRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 M VD + + Q+ D + + Sbjct: 350 HRNARLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQLAADAKELRVMPVL 409 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 +I+ NL A PR G+V +++ E + G R Sbjct: 410 GAPAVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVTLTSGDGEARLVVSDTGCGIREAF 469 Query: 161 -PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 P F + + + V L + + + + L Sbjct: 470 LPHVFERFRQEDASTTRQFGGLGLGLSIVKELVEMHGGHITAASDGEQRGATFTVTLP 527 >gi|284046954|ref|YP_003397294.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283951175|gb|ADB53919.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 1010 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 A+ + L + + H++ +P+ +I +EL+ E + + ++ Sbjct: 747 AQKRAAEAEADRLKNEFFALVSHELRTPLTSIVGYVELVLEGEVGEVNDEQARFLGIVER 806 Query: 56 SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + G + D + + + V + Sbjct: 807 NGKRLQRLVGDLLFVAQVEAGTLNLEHGDATLEAIVRDAVDGARPRAEQVGVTVAAETEP 866 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +++ NL A P GG VT++++ +E ++ G E+ Sbjct: 867 VPPIRGDADRLGQLVDNLISNALKFTPSGGDVTVTLRIDGDEVALAVADTGIGIPADEQA 926 Query: 165 TQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + +A + R+ E +L Sbjct: 927 RLFDRFFRASTAVEGEIPGIGLGLSICQAIAEGHGGRIEVESEVGRGTTFRVVLP 981 >gi|116332710|ref|YP_794237.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC 367] gi|116098057|gb|ABJ63206.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus brevis ATCC 367] Length = 618 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 29/225 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---RL 69 S + H++ +P+ ++ + +E L + + + +++ + + I + + Sbjct: 381 FVSNVSHELRTPLTSVRSYIEALSEGAWKDPKVAPDFLKVTQEETDRMIRMINDLLTLSR 440 Query: 70 AFGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSRER 115 T VD + D+ +D ++ + + Sbjct: 441 MDSGTQKVDLEMVNLNELFNYVLDRFDMMLKQDDQPEKTYTIKRDFTKRDLWVEIDTDRF 500 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++L NL A P GG VT + ++ N I S+ G + +I D Sbjct: 501 TQVLDNLMNNAIKYSPDGGVVTARLLETHNNVILSVSDQGLGIPRADIP-RIFDRFYRVD 559 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ + + L Sbjct: 560 KARSRAQGGTGLGLAISREVVQMLGGRIWVDSREGRGSTFYISLP 604 >gi|294498882|ref|YP_003562582.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294348819|gb|ADE69148.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 459 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 + KN ++ + + + H+I SP+ +I L + + + + + Sbjct: 213 LTKNFNQMTKELNKIETMRQEFIASVSHEIQSPLTSIRGFSAALKDDIVSEDKKIQYLTI 272 Query: 53 IRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 I S + + + + + + + Sbjct: 273 IEKESTRLSQLSSNLLKLASLDSEHQTLTLQQYRLDEQIRHVVMALEPQWTKKNIEIDLD 332 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ ++ ++ LNL A P G V IS+ E +K NG + Sbjct: 333 LSNVQMEADKDLLEQVWLNLVTNAIKYTPENGLVKISIHQKNEEIDVKIKDNGIGIAEED 392 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + T+ + + ++ + E + + + L Sbjct: 393 QKYIFESFYKVDKSRTLKGSGLGLAITKKIVRLHEGAIRVESKKEQGSIFTVTLP 447 >gi|257457920|ref|ZP_05623079.1| sensory box histidine kinase [Treponema vincentii ATCC 35580] gi|257444633|gb|EEV19717.1| sensory box histidine kinase [Treponema vincentii ATCC 35580] Length = 404 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 66/234 (28%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49 K N ++ L +L L + + H+I +P+ AI ++LL + Sbjct: 138 RKREEINNRRLENLASLTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACNLEINAKAQKH 197 Query: 50 MQLIRLSSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + ++ + + ++ F + + L Q + Q+ Sbjct: 198 LDVVEEEIERLNKIVVDFLFAVRPLQCEFAPVDVNELIKNLFATFQEEFSAAGITFVSQL 257 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARF 160 I + L + + ++ + + + ++ G Sbjct: 258 DSELPVIQADERFLRQALINILTNAKAAMMPAGGELGVTTRFDEEKVYITVTDTGKGI-P 316 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ +I + + D + + E+ + + +L Sbjct: 317 PDILHKIFEPYFTTKPDGSGLGLTMTYKVIKEHGGDIQVHSEVGSGTRFTLMLP 370 >gi|254562007|ref|YP_003069102.1| sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens DM4] gi|254269285|emb|CAX25251.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens DM4] Length = 622 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 K++ L S + AL L I HD + + AI SLEL + + ++ Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R + VD + + + + V + Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEPDMPF 365 Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++ L + + + R + S+ G Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTG 425 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++ + + + V LA + RL + L + Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484 >gi|239995633|ref|ZP_04716157.1| osmolarity sensor protein [Alteromonas macleodii ATCC 27126] Length = 439 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 20/204 (9%), Positives = 57/204 (27%), Gaps = 6/204 (2%) Query: 17 LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 ++ + I HD+ +P+ I + E+L + + V + ++++ Sbjct: 232 IMTAGISHDLRTPLTRIRLASEMLPEDQDWIKDGIVNDIEDMNAIIDQFIDYARYDTEEV 291 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 T D + ++ Q ++++ +++ NL A Sbjct: 292 TQETDLNAIIAELVQARHLDDKHHIELKLNAIPPLSLRRIAMKRVIDNLIENAFKYGSDD 351 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190 ++ + ++ G E F G+ + + + Sbjct: 352 IAISSFYNRHEKRVYCKVRDFGPGIPEAELDGVFMPFAQGDKARNSSGSGLGLAIIRRIV 411 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + + +V L Sbjct: 412 EAHDGEVTLRNHPQQGLVAEFYLP 435 >gi|220904834|ref|YP_002480146.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869133|gb|ACL49468.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 567 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 72/235 (30%), Gaps = 29/235 (12%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIG-------------------AIHNSLELLDEVG 44 L S + AL + + + H++ +P+ A+ N E+L+ Sbjct: 322 ARMLQSSKMAALGKMAAGVAHEVNNPLMLIQENAGWIRDLLDDEKPEAMKNYQEILESTE 381 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 D+ ++ + + R+ G T + + + E + + + + + Sbjct: 382 KIDQHVKRAKGITQRM--LGFGRRMNPGRTEILINSLTDQAAEMLKTEATNRNIDIIREY 439 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + A++ A ++ + G +TI K +G Sbjct: 440 DPQVPVILSDPAQLEQIFINIIDNAIDAIGKNGSLTIRTLAWKKGVRILFTDSGPGM-DQ 498 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E T+I D + + + + + R+ + S L Sbjct: 499 ETVTRIFDPFFTTKKVGEGTGLGLAICYTILEKLGGRIEVQSRLGEGTTFSITLP 553 >gi|163852260|ref|YP_001640303.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218531018|ref|YP_002421834.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|163663865|gb|ABY31232.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218523321|gb|ACK83906.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 622 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 K++ L S + AL L I HD + + AI SLEL + + ++ Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R + VD + + + + V + Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEPDMPF 365 Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++ L + + + R + S+ G Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTG 425 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++ + + + V LA + RL + L + Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484 >gi|94967781|ref|YP_589829.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94549831|gb|ABF39755.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 390 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 62/224 (27%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54 + L L L + + H+I +P+ I ++++ + Q Sbjct: 157 RTQMSRAEHLATLGELAAGLAHEIRNPLAGIAGVIDIIGRDLPIESPACAVVKEVKQEAM 216 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110 + L+ R D + + + + Sbjct: 217 HINRILTDLLETARPKHPNFRREDLDATISHAIMFAREQATTKQVHIEFLQQKNVRPVEH 276 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++LLN+ + A ++ R G + +S+++ + S+ NG I Sbjct: 277 DPAQIHQVLLNMLLNAIQAVAREGHIVVSLENRGDYAAISITDNGPGIPPDTLKN-IFRP 335 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+ LL Sbjct: 336 FFTTKGHGTGLGLSLARRMVEDHAGRIEVTSKVGEGTTFVVLLP 379 >gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] Length = 571 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 64/222 (28%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + + H++ +P+ +I E L ++ +D+ + +I S + + Sbjct: 345 ENIRSQFVANVTHELKTPLTSIRGFAETLKYVEDRETKDKFLNIINDESDRLTRLINDIL 404 Query: 68 ---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + L + + + ++ + ++ Sbjct: 405 ALSHIENSNSMKLENISINEMLEDIVYLMENSAKDKNIELFIVGDKMQPIKGDRDRFKQM 464 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 ++NL GGKV I + N I ++ G E ++ + Sbjct: 465 MINLVDNGIKYTEEGGKVYIGAKKEDNNCIVWVEDTGVGI-SKEHVERLFERFYRVDKAR 523 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + E + + Sbjct: 524 SRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIRIP 565 >gi|169349479|ref|ZP_02866417.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552] gi|169293554|gb|EDS75687.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552] Length = 562 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 66/225 (29%), Gaps = 20/225 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLK 65 +M + S + H++ +P+ +I ELL+ + + + I + + Sbjct: 336 AMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVINDEQAAKKALDKIHTEVDNMSNLIN 395 Query: 66 FMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRER 115 + + V + +I ++ I + + Sbjct: 396 DILMISRLENKDVDVIKHPVHIEPLVNEIIDTMQVEIDKRNLTVYKDINDIIYLSNHQHM 455 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172 ++L NL A + G +TI + ++ + + G + F + + Sbjct: 456 HQLLSNLITNAIKYNKKDGSITIKAYEVEHNIVIEVSDTGRGISKIDQGRVFERFFRCDE 515 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + H + ++ D +L K Sbjct: 516 GRDKETGGTGLGLAIVKHIVHYYQGNIVLTSKLDEGTTFKIILPK 560 >gi|251798474|ref|YP_003013205.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247546100|gb|ACT03119.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 488 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 67/240 (27%), Gaps = 25/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I L + L S I HD+ +PI I E + + ++ + I Sbjct: 247 LYESIQLQLHYEENRKQLISNISHDLRTPITTIKGYAEGIRDGVTNTEEKLNKYVSAIHT 306 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + A D ++ + Sbjct: 307 RASDMERLVNELLYFSKLDLKKEPFSFQKLELSPFLYNTADDMSIEFHNQHVDVSWENMP 366 Query: 116 AK-------------ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA--- 158 + +L+NLF + + K +++ + ++ NG Sbjct: 367 EQPLFVLADREKLKRVLINLFDNCLKYMNQPPKRITIEVNRDEDDVVITITDNGPGIPEE 426 Query: 159 ---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E+F ++ ++ + + + ++ +S L++ Sbjct: 427 AIPHIFERFYRVEPSRNQTAAGGSGLGLAIAQQIIEGHGGKIRASSELGRGTSISFTLKR 486 >gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 996 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 72/243 (29%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47 K +L + L A L + + H++ +P+ +I ++L D + Sbjct: 752 RKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLTSIIGFSDILLKGKLGDLNESQK 811 Query: 48 EVMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + + S + + + + + E + Sbjct: 812 TYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEKVSIPQLMKDLKENIYPFASQKGL 871 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGN 156 + + + ++ K+ L+ + + ++ + VT+ + + N+ +FS+ G Sbjct: 872 EINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQGSVTVKLDWNDNDMLFSVIDTGI 931 Query: 157 LARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ D + V L + ++ E + S Sbjct: 932 GIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALVERLVEMHGGKIWVESEEREGSRFSF 991 Query: 212 LLE 214 ++ Sbjct: 992 IIP 994 >gi|254445944|ref|ZP_05059420.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260252|gb|EDY84560.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 389 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 74/232 (31%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQ 51 + S + + LL + + H++ +P+ ++ L+L++ + Sbjct: 149 TKEETIESEKIASILLLAAGVAHELGNPLNSLTIHLQLMERQLKKLEATPASEKLGNSLD 208 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VS 103 + R +K A ++ L + + + + + + + V+ Sbjct: 209 VCRGEVERLDGIIKNFLEAIRPQDPDFQVLDLSLVLEEVLEVVGSELNDRGISVEVEVVT 268 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ NL A ++ GG + I + + +G R + Sbjct: 269 EAPIVRADRNQMKQVFFNLIKNAMEAMQPGGSLKIVSRSDEERIYLRFGDSGGGIRKSDL 328 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V + + ++ + + V++ L K Sbjct: 329 S-RVFQPYHTTKREGSGLGLMIVQRIIRGHGGQVGIDSQEGIGTVVTLELPK 379 >gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185] gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185] Length = 869 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 57/235 (24%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSNFTEEEVTQFIATINK 692 Query: 56 SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103 + + + + + L + + + + Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPAGVELVLRMPAG 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF-- 160 + +++ NL A G +D + ++ G Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTGSGFITFGYEEDEEPGYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + K + + L Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 865 >gi|301060601|ref|ZP_07201436.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300445304|gb|EFK09234.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 612 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 62/239 (25%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47 + + ++ L +L L + I H+I +P+ A+ LL + Sbjct: 364 LKEAQEQVIAQEKLASLGKLSATIAHEINNPLAAVLTYNRLLIKQNRNGRLTPEREDDIA 423 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102 + ++ + +K + + + +I + D +V Sbjct: 424 RYLTIMESETARCGEIVKNLLAFSRQSRISIENKNIEEIVDRTLALLSHDLEMKGVKVVK 483 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNL 157 + ++ + +I L V + V + + G Sbjct: 484 HIESDLPEIQCDFRQIQQALLNVVGNASEAMDGGGILTVAARRSVKRPNMEIRISDTGCG 543 Query: 158 ARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E I + + + + V + + + E + L Sbjct: 544 V-PKEHLKSIFEPFFTTKEEGKGVGLGLSVVYGIVTRHHGTIEVESEPGEGTAFTICLP 601 >gi|295694718|ref|YP_003587956.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus tusciae DSM 2912] gi|295410320|gb|ADG04812.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus tusciae DSM 2912] Length = 440 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 69/232 (29%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51 + + L L + + + I H+I +P+ +I L+++ E E + + Sbjct: 207 LGERFENQLQRQEKLATVGKIAAGIAHEIRNPLTSIKGFLQIMRENFIRSHMDKEFQYTE 266 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + L + + GL + ++ + + Sbjct: 267 VMLAEIDRVNELVGELLLLSRPRDVKLASTEVEELVTGLAPLISSETLLHDIEFHLCIKP 326 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +++LNL A ++ + V +N ++ G Sbjct: 327 VPKVLADPELLKQVVLNLVKNAVEAMEHGGTLTLCTDVDREENLVRIDVQDTGPGIPAY- 385 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + S LL Sbjct: 386 AMDRIFDAFFTTKENGTGLGLPICQRIISDLGGMIRV-SSKGYGTTFSILLP 436 >gi|149911128|ref|ZP_01899754.1| signal transduction histidine kinase regulating C4-dicarboxylatetransport system [Moritella sp. PE36] gi|149805805|gb|EDM65795.1| signal transduction histidine kinase regulating C4-dicarboxylatetransport system [Moritella sp. PE36] Length = 604 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 67/232 (28%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 + + + L L L + I H++ +P+ AI + + L + Sbjct: 366 LRDTQKELIQTAKLAVLGQLSASISHELNNPLAAIRSYADNALVFLQREQHQSTQDNLQR 425 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 ++ L + + F R + G +V + ++ + V Sbjct: 426 IIHLTERMAKISSQLKFFARKSSGELHTVPLRNVINMAVELVKPQLKNNQVSITVDDANI 485 Query: 108 KIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++ ++ ++ L + ++ + I + + + I + +G+ Sbjct: 486 DVQVNVDQVQLEQVLVNLLSNAMQAVEDTSEKHIHIILCRHQEQVIVQVDDSGSGINPVN 545 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + E + S L Sbjct: 546 LPQ-LFDPFFTTKDTGLGLGLSISHKIMRNMHGNIKAENRPNSGARFSLSLP 596 >gi|297530208|ref|YP_003671483.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. C56-T3] gi|297253460|gb|ADI26906.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. C56-T3] Length = 420 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55 M +++ + L + + I H+I +P+ + L+LL + V +L+ Sbjct: 182 MFQSLNMMKETEKLAVAGRIAAGIAHEIRNPLTTVRGYLQLLKSDLPDRIASLVERLLIP 241 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGE 107 A + L Q VD + + Sbjct: 242 ELDRANDIITDFLNIAKPADVKMETFNLHRFLRDDVGVLLQSEALLHNVDVHFDLDDQLD 301 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARFPEK 163 +++ +R+++L + ++ T+ V + ++ +G Sbjct: 302 DYEMNGDRSQLLQVFLNLFRNAVEAKVAKTMRVSICSRKINHLVQLRFCDDGPGIPPS-V 360 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + ++ + + D H Sbjct: 361 IDHVFDPFFSTKETGTGLGLSLSKKIVELHRGTMKVQS-DAHGTCFLIEFP 410 >gi|289433261|ref|YP_003463134.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946981|gb|ADC74678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1402 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + L A+ + + I H+I +P+ + ELL +Q Sbjct: 1019 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPADIQDSIKI 1078 Query: 57 S--------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107 L F R V+ + + + + + Sbjct: 1079 INNGSLRVVEIVKRLLTFARQTRPIVSKVNITDVIDNSLALRSYVLETAGISIIRDYAPN 1138 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFP 161 + + A+I + + K+ + + + S K +G P Sbjct: 1139 LPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTKKAGKYILISFKDDGAGI-PP 1197 Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + E+ ++ E D L Sbjct: 1198 DVMDKIFQPFFTTKDPGQGTGLGLSLSQGIILEHGGKIWAENNPDGGATFMIELP 1252 >gi|261419833|ref|YP_003253515.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. Y412MC61] gi|319766648|ref|YP_004132149.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. Y412MC52] gi|261376290|gb|ACX79033.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. Y412MC61] gi|317111514|gb|ADU94006.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. Y412MC52] Length = 420 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55 M +++ + L + + I H+I +P+ + L+LL + V +L+ Sbjct: 182 MFQSLNMMKETEKLAVAGRIAAGIAHEIRNPLTTVRGYLQLLKSDLPDRIASLVERLLIP 241 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGE 107 A + L Q VD + + Sbjct: 242 ELDRANDIITDFLNIAKPADVKMETFNLHRFLRDDVGVLLQSEALLHNVDVHFDLDDQLD 301 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARFPEK 163 +++ +R+++L + ++ T+ V + ++ +G Sbjct: 302 DYEMNGDRSQLLQVFLNLFRNAVEAKVAKTMRVSICSRKINHLVQLRFCDDGPGIPPS-V 360 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + ++ + + D H Sbjct: 361 IDHVFDPFFSTKETGTGLGLSLSKKIVELHRGTMKVQS-DAHGTCFLIEFP 410 >gi|158522858|ref|YP_001530728.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511684|gb|ABW68651.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 481 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSM 58 M K++ + M + + + + H+I +P+ A+ ++E+L+ + + +L+ + Sbjct: 239 MRKHVD-RVERMAAIGEMAAGLAHEIKNPLAALTGAIEMLNSELTFFDPDGARLMGIVKR 297 Query: 59 SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEK 108 F R G SV + D + E I D V ++ Sbjct: 298 ETKRLNTLVTNFLLFARPQRGKAQSVLLDRVIRDTLDLFEKGINEDWIVCRSVLAPNIWV 357 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEK 163 +IL NL + A ++ G+ + + + NG + Sbjct: 358 DVDPEYLRQILWNLLLNAADAIRDSGRKEGVITVTTASARDHLAAIEVADNGCGMPESD- 416 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + V L R+ E + S LEK Sbjct: 417 MDAIFNPFFTTKPKGTGLGLSVVHRLVEAYGGRIDVESLQGQGSRFSLFLEK 468 >gi|73749300|ref|YP_308539.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73661016|emb|CAI83623.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1434 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + L A+ + + I H+I +P+ + ELL +Q Sbjct: 1051 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPADIQDSIKI 1110 Query: 57 S--------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107 L F R V+ + + + + + Sbjct: 1111 INNGSLRVVEIVKRLLTFARQTRPIVSKVNITDVIDNSLALRSYVLETAGISIIRDYAPN 1170 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFP 161 + + A+I + + K+ + + + S K +G P Sbjct: 1171 LPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTKKAGKYILISFKDDGAGI-PP 1229 Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + E+ ++ E D L Sbjct: 1230 DVMDKIFQPFFTTKDPGQGTGLGLSLSQGIILEHGGKIWAENNPDGGATFMIELP 1284 >gi|56420125|ref|YP_147443.1| hypothetical protein GK1590 [Geobacillus kaustophilus HTA426] gi|56379967|dbj|BAD75875.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 420 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55 M +++ + L + + I H+I +P+ + L+LL + V +L+ Sbjct: 182 MFQSLNMMKETEKLAVAGRIAAGIAHEIRNPLTTVRGYLQLLKSDLPDRIASLVERLLIP 241 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGE 107 A + L Q VD + + Sbjct: 242 ELDRANDIITDFLNIAKPADVKMETFNLHRFLRDDVGVLLQSEALLHNVDVHFDLDDQLD 301 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARFPEK 163 +++ +R+++L + ++ T+ V + ++ +G Sbjct: 302 DYEMNGDRSQLLQVFLNLFRNAVEAKVAKTMRVSICSRKINHLVQLRFCDDGPGIPPS-V 360 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + ++ + + D H Sbjct: 361 IDHVFDPFFSTKETGTGLGLSLSKKIVELHRGTMKVQS-DAHGTCFLIEFP 410 >gi|172057192|ref|YP_001813652.1| histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989713|gb|ACB60635.1| histidine kinase [Exiguobacterium sibiricum 255-15] Length = 546 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 68/232 (29%), Gaps = 23/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57 K +L + S + H++ +P+ +I ELL + + + ++ I + Sbjct: 313 TKEKELDLKQSE----FVSIVSHELRTPLSSIMGFTELLMRRTLDGPRQKKYLETIHSET 368 Query: 58 MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGE 107 + + + +D + ++ + + + + E Sbjct: 369 VRLAELIDDILEIQKGEDLTQGTTKKRMDLKKLVFEMRPMFDLASSKHRIRVAFEPGRYE 428 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164 + ++ NL M A P GG + I + +++ G P F Sbjct: 429 LTASEEKMKQLFTNLIMNAIKYSPDGGLIQIKGVVQDHLIRLTVEDEGIGIPEKSVPFIF 488 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + ++ ++ + + + + Sbjct: 489 DKFYRADNSDTRKIGGTGLGLAICQMIVKDHDGTISVQSEEGIGSTFTVEFP 540 >gi|298528914|ref|ZP_07016317.1| integral membrane sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510350|gb|EFI34253.1| integral membrane sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 621 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 67/228 (29%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57 + + S A+ S + H+I +P+ + ++ + + + + + Sbjct: 389 LKDTQQRLVQSERFAAIGEAASHMSHEIKNPLMLMAGFAGQVRRRLSEDSPEAEKLDIIV 448 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKI 109 A K + +T I + + + + + Sbjct: 449 NEAKRLEKMLVEVRDFTRPHKLSIKPCQPNDLIAETVKIFQDSLESSGIVCSQELSTDLT 508 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ + ++ L A +P GG + IS + + S++ +G EK Sbjct: 509 QVNMDPDQVKQVLVNLIKNAVEVMPEGGTLGISSKRQNQWVVVSVQDSGPGI-PAEKLKN 567 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + ++ + + + H + L Sbjct: 568 IFSPFYTTKDKGTGLGLAVSYRIIQDHGGDIFVDSQEGHGARFTIYLP 615 >gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] Length = 896 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + L + + + H+I +P+ AI ++ E E+E + + Sbjct: 494 MKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTDEEERLGYYEIV 553 Query: 57 SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + L+ + + D Sbjct: 554 ESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPEGVELIYEPS 613 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ NL A G ++ + F + G P+ Sbjct: 614 DENIVIDGDKNRIFQVISNLIGNAFKFTTS-GHISYGYRREGKYVAFHVTDTGMGI-APD 671 Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 K ++ + V + + + + + +L Sbjct: 672 KVDRVFERFVKVNNFAQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLP 725 >gi|89099307|ref|ZP_01172184.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89085916|gb|EAR65040.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 617 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 71/224 (31%), Gaps = 14/224 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 ++ +++++ L + I H+I +P+ A+ ++LL++ M + + Sbjct: 381 EDQLKKSDTLNVIGQLAAGIAHEIRNPMTALKGFIQLLEDSAGSGNSM-YFNIITSELQR 439 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRE 114 + DI Q++++ + + + + + + E Sbjct: 440 IDSIINEFLILAKPQAIQYVEKDIIQLMKETVELLTAQAVLHNVQFRTDYAKNLPLVFCE 499 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDG 170 ++ + ++ K I + S++ G+ PEK ++ + Sbjct: 500 PNQLKKVFINIIKNAIEVMPKGGIITICIQKNRTGSIRISIRDEGSGI-PPEKLRKLGEP 558 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + E V L Sbjct: 559 FYTTKERGTGLGLMVTYKIIEEHEGNIEVESKMGEGTVFHIDLP 602 >gi|308270677|emb|CBX27288.1| hypothetical protein N47_I07080 [uncultured Desulfobacterium sp.] Length = 699 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 74/243 (30%), Gaps = 30/243 (12%) Query: 2 AKNICFNL-SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 K++ L S L A LL I HD + + I + EL+ +D ++ Sbjct: 312 QKSLEEQLRQSQKLEAVGLLSGGIAHDFNNLLTTIIGNAELVLMSIPKDNPLRENIEGIK 371 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 S+ L F R ++ ++E+++ I D ++ + Sbjct: 372 AAGERSATLTRHLLSFSRKQVLQPTVINLNEIALNMEKMLCRMIGEDIEMKTILDPDLGQ 431 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVT---------------ISVQDSKNENIFSLK 152 + + +I + A ++P GGK+T + S+ Sbjct: 432 IEADSGQIEQVIMNLVVNARDAMPDGGKITIETANVDLDEDYTRSHIAVAPGPYVMLSVS 491 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E +QI + + + V + ++K + Sbjct: 492 DTGTGM-SREVQSQIFEPFFTTKGKGTGLGLSTVYGIVKQSKGNIWVYSEPGKGTTFKIY 550 Query: 213 LEK 215 L + Sbjct: 551 LPR 553 >gi|119718536|ref|YP_925501.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119539197|gb|ABL83814.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 600 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 29/231 (12%) Query: 12 MDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 +L AL L + + H++ +P+ ++ LE+L+ + + R+ Sbjct: 367 EELQALDSYKGQLIATVAHELKNPLTSVMGHLEMLESSPDLTGTTRTSLNAMDRGARRMV 426 Query: 66 FMR------------LAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLS 112 + VD + D+ +I V V + Sbjct: 427 RVIEDLLLLSKVGDPDDPLIAAPVDLARIVDDVVDLITMPAEQKHLEVTVELPAGPVFAL 486 Query: 113 RERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ NL A P G V I V + + + ++ G + ++ Sbjct: 487 GDHDELDRVTANLVSNAVKYTPASGTVRIVVDRAGQDVVLTVADEGIGISEEDLL-RLGT 545 Query: 170 GNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S+ + V + + RL L Sbjct: 546 EFFRSSNPEAVAQPGTGLGLAIVRRIVERHGGRLEVRSELGRGSTFQVWLP 596 >gi|315195596|gb|EFU25983.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus CGS00] Length = 554 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 +L + + H++ +PI +I E L + D + +I S + Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385 Query: 65 KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + Y D + D + + ++ + Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVIVKAQESK 445 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 A+++ NL A G + + V IF ++ G + E +I + Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + +L+ Sbjct: 505 DKARSRDSGGTGLGLSITKHIVKAHQGNIEVNSQVGKGSTFKVILK 550 >gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 751 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 61/237 (25%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H++ +P+ I ELL G+ E+++ R + Sbjct: 353 AKEEAERANRAKSAFL--ATMSHELRTPLNGIIGMSELLMSSGLSGELVEYARTIQTAGE 410 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 D L + + + V Sbjct: 411 NLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKNLRFVLEVASEIP 470 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE 162 I +++L NL A RG V + + E +F ++ G E Sbjct: 471 AVVISDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEEEGRAELVFQVRDTGIGIPREE 530 Query: 163 ---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + L R+ E + + + Sbjct: 531 LPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESEEGKGSCFTVRIP 587 >gi|258514653|ref|YP_003190875.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778358|gb|ACV62252.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 481 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 68/244 (27%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLD-----EVG 44 +A+ I L ++ + H++ +P+ I ++ELL E Sbjct: 231 LAETINAMLERLNFAYQKLDQSYRSQKRFLADASHELRTPLTIIRGNIELLQQMGDAEPE 290 Query: 45 IEDEVMQLIRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDF 93 I E + I S ++ + + + E++ Sbjct: 291 IRTEALADISEESRRMSWLVEDLLSLARADAGQKMSEELVSLRELLADVIHRAEKLAGPV 350 Query: 94 IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + VS AK++L L A GG V + + + E ++ Sbjct: 351 NLEATNIFVSEDNYVYGNKEYLAKLILILLDNAFKYTEPGGSVLLKTELADKEACIAVID 410 Query: 154 NGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G + F + + + +A ++ R+ + + Sbjct: 411 TGTGIAEENLEQIFERFYRIDQSRGSRGTGLGLSIARWIAEQHDARIEVKSTLGQGSEFT 470 Query: 211 ALLE 214 L Sbjct: 471 VRLP 474 >gi|229089712|ref|ZP_04220973.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42] gi|228693611|gb|EEL47313.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42] Length = 461 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITMEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454 >gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 852 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 ++I + L + S I H++ +P+ +I+ EL+ + + + ++ I + Sbjct: 607 RDITSETEAERLKSEFISTISHELRTPLSSIYGFTELMVKKQLPNEKQAKYLETIHSETE 666 Query: 59 SAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +D + D+ E + ++ + Sbjct: 667 RLTHLVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLTFYEASSLKHEFELIADDARPYE 726 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 L + +++ NL A PRGGK+T+ + + +K G + ++ Sbjct: 727 LFVDCQKFKQLMSNLLSNAVKYSPRGGKITVELAHHEQIVSIKVKDEGIGI-PSDALDRL 785 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D I + + + ++ E I + Sbjct: 786 FDKFYRVDNSDSREIGGTGLGLPICQEIVRGHNGQIHVESIQHEGSTFIVEIP 838 >gi|171780120|ref|ZP_02921024.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281468|gb|EDT46903.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 450 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRIIRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + + D + + + + I + + Sbjct: 271 IDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTVAGKQYEIVRDYPIKSIWVEIDPDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 ++L N+ A P GGK+T+S++ ++ + I S+ G + F + + Sbjct: 331 TQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 391 ARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434 >gi|118476336|ref|YP_893487.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118415561|gb|ABK83980.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 463 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGQGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454 >gi|329733745|gb|EGG70071.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU045] Length = 239 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ D + +I S Sbjct: 10 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 69 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + I + D Q + + ++ Sbjct: 70 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 129 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + A+++ NL A KV + V + N+ ++ G + F + Sbjct: 130 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 189 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + + L Sbjct: 190 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVL 235 >gi|218248275|ref|YP_002373646.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218168753|gb|ACK67490.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 491 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 11/203 (5%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +PI I LEL+ D+ + E + L+ + + L + Sbjct: 288 HELRTPITIIRGHLELMGDDPQDQQETITLVLDELDRMARLVDDLSLLAKAERPDFLQLE 347 Query: 83 LGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + DI E+ + ++ G+ + + + ++NL A + Sbjct: 348 MIDISDFTEELYLKAIGLKSRHWLLENKAKGQLMIDRQRITQAIMNLAQNASQHTRESDQ 407 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 +TI + + +K G + F + V NV S+ + + V +A Sbjct: 408 ITIGSTEDNHFIRLWVKDTGQGINKQDQQRIFNRFVRLNVRSSSEGSGLGLSIVKAIAEA 467 Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215 + R+ + + +L K Sbjct: 468 HGGRVELISEIGEGSIFTIILPK 490 >gi|153832326|ref|ZP_01984993.1| sensor histidine kinase [Vibrio harveyi HY01] gi|148871355|gb|EDL70218.1| sensor histidine kinase [Vibrio harveyi HY01] Length = 659 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ +E E + I Sbjct: 413 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGEEASRVQEEIDAI 472 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ + Sbjct: 473 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDIEFVTDLQA 532 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M ++ GK+T+ +D + + G Sbjct: 533 HTSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVVSEDWIEDSELKGAAIHVTDEGCGI- 591 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++I + D + + + L E S L K Sbjct: 592 KPENLSRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 647 >gi|148656158|ref|YP_001276363.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148568268|gb|ABQ90413.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 1247 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 62/234 (26%), Gaps = 19/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 + + L AL L + H++ +P+ I +L + I + + Sbjct: 872 LRRLEEQVRQHEKLAALGRLVAGAAHELNNPLAVILGLSQLQMDEDIPPSIRADLEQIER 931 Query: 57 -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + F + +D + + D Q + IA + + + Sbjct: 932 AARRAAAIVHQLRAFGQPRTLEPVPIDLSLVIDDTLQRLASQIAAGQVIVTVDLPPDLPN 991 Query: 112 S----RERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLARFPE 162 + +++ N+ + A +L + + +++ G Sbjct: 992 VLGELHQIEQVVFNIALNAIQALASRLPDEPRHLRFSARAEQESVVLAIEDTGPGIAPEH 1051 Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + +++ + E L + Sbjct: 1052 LSRVFEPFFTTRDVGQGMGMGLAVVYSIVQQHRGEVWVESRQGVGTTFYVRLPR 1105 >gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus epidermidis ATCC 12228] gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus epidermidis SK135] gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis M23864:W2(grey)] gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus epidermidis ATCC 12228] gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus epidermidis SK135] gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis M23864:W2(grey)] gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU028] Length = 565 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ D + +I S Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + I + D Q + + ++ Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 455 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + A+++ NL A KV + V + N+ ++ G + F + Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + + L Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVL 561 >gi|118578878|ref|YP_900128.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118501588|gb|ABK98070.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 412 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + K + L A+ L + + HDI +P+ +I +L+ + ++E + I Sbjct: 177 LQKAHSEIAQTEKLAAMGYLAAGMAHDIRNPLNSISLFTQLMRQNSIDPDQEEYLGKIIK 236 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + + +V L IE +R Sbjct: 237 EIERIDAIIRKLLNMSSRSRNVTSDVRIDRVIDTALEVFAPQIETGKIRLERRYELTPPP 296 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + E ++ NLF+ A +P GG++ + + ++ + ++ +G +I Sbjct: 297 IKADAAELEQVFTNLFLNALDEMPGGGRLGVGIAVEEDMVVVRVEDSGKGIPEHALP-RI 355 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V +A + E V+ Sbjct: 356 FDPFFTTKPRGTGVGLPVVKRIARLCGGSVRVERSSREGTVVRLEFP 402 >gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] Length = 590 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 69/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L ++ + + + +I S ++ + Sbjct: 366 FVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQQFLSIILTESQRMESLIQDLLDLSK 425 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS---WTGEKIDLSRERAKILL 120 + SVD L ++ + + + + S+ ++ + Sbjct: 426 VEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFV 485 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A GG V +S+++ + ++ G E +I + Sbjct: 486 NLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEIS-RIFERFYRVDKARSR 544 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L +K + + + S L K Sbjct: 545 NSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTFSVKLHK 585 >gi|269963053|ref|ZP_06177389.1| sensor histidine kinase [Vibrio harveyi 1DA3] gi|269832185|gb|EEZ86308.1| sensor histidine kinase [Vibrio harveyi 1DA3] Length = 680 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ +E E + I Sbjct: 434 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGEEASRVQEEIDAI 493 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ + Sbjct: 494 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDIEFVTDLQA 553 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M ++ GK+T+ +D + + G Sbjct: 554 HTSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVVSEDWIEDGELKGAAIHVTDEGCGI- 612 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++I + D + + + L E S L K Sbjct: 613 KPENLSRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 668 >gi|210613902|ref|ZP_03289966.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787] gi|210150927|gb|EEA81935.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787] Length = 248 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 70/220 (31%), Gaps = 15/220 (6%) Query: 9 LSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 + SM L L+ S+I H++ +P+ I+++L+L++ E Sbjct: 1 MQSMQLNKDEQLVISKISHELRNPLTIIYSTLQLIESRHPEARTFDHWHELMQDVEFMSV 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEKIDLSRER 115 + + + E ++ ++ + +I + + Sbjct: 61 LLDDLSRFNHAGALNFSTFSFRPFWEYISLSFAASVADTKLEYFSKIDSSINQITGDKTK 120 Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + + LNL A + G ++++ + SK+ I ++ NG E + I + Sbjct: 121 LQEVFLNLLRNAADAASPDGTISMTAEQSKDSIIIQVQDNGCGI-SKEHLSSIFEPFTTY 179 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 180 KKNGTGLGLSISESIIQAHGGTIEVDSAPQKGSTFRITLP 219 >gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] Length = 589 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 70/216 (32%), Gaps = 23/216 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLK------- 65 + + H++ +P+ +I E L + + D + + +I S + Sbjct: 363 FVANVSHELKTPVTSIKGFTETLLDGAMHDEQLRDQFLHIIWKESERLQSLIHDLLELSK 422 Query: 66 ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + +L + T + + + + + +D + + + +I +N Sbjct: 423 IEQNYFQLNWQQTNLFAVVSEVMTLLKGKAEEKGIDISLSAEGSFDLEGDPERLKQIAIN 482 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A GG++ ++++D + F + G R E +I + Sbjct: 483 LVNNAITYTSNGGRIDLALKDHGDVVEFEVNDTGIGIRESEIP-RIFERFYRVDRARSRN 541 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V L ++ ++L E + Sbjct: 542 SGGTGLGLAIVKHLVEAHQGKILVESEFGKGTTFTI 577 >gi|301062897|ref|ZP_07203480.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300443014|gb|EFK07196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 524 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----------DEVGIEDE 48 + + S + A+ L S I H++ +P+ I + +L + + ++ Sbjct: 280 LESREAVLIQSHKMRAVGTLTSGIAHELNNPLNNITLTAHMLLEDYQSLSDDERKEMAED 339 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSW 104 ++ + S L F R + +D L D + + I Sbjct: 340 IVGEAKRSKHIISNLLDFARESGSQLEPLDLKELLRDTINLAANQIKLSGIRIDFQATDN 399 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE 162 S++ ++ LNL + A + +G ++ + D N + +G+ Sbjct: 400 LPRIHGDSQQLRQVFLNLILNAIDASKKGDRIQVMVLPADDPNYVAVKVIDSGSGI-PDH 458 Query: 163 KFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ R+ + S L Sbjct: 459 ILGSIFDPFFTTKGEGKGTGLGLSVSQGIVGKHGGRIRATSREGKGSTFSVTLP 512 >gi|256833553|ref|YP_003162280.1| histidine kinase [Jonesia denitrificans DSM 20603] gi|256687084|gb|ACV09977.1| histidine kinase [Jonesia denitrificans DSM 20603] Length = 469 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 69/230 (30%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIR 54 + + + L ++ L + H++ +P+ + LELL+ + +L+ Sbjct: 226 LTRTVNSMLDRVETAISSQRQLLDDVGHELRTPVTIVQGHLELLETTDPQEVHTTRELVL 285 Query: 55 LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + R F VD + ++ + A + + Sbjct: 286 DELDRMTGLINDIVLLAKAQRTDFLTPSEVDIDDLMHEVTHKAQPLGAREWVTSATTGVV 345 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + ++ + LL L A P ++ + + ++ G + F Sbjct: 346 QSVDRQKITQALLQLADNAVKYSPDNTRIILGASATSTHISLWVQDEGFGIAPEDHKAVF 405 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ S D + V +A + + ++ L Sbjct: 406 DRFHRGDNASRADGSGLGLSIVQAIATAHGGTVNLSSQPGKGTTVTITLP 455 >gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] Length = 885 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 49/228 (21%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI ++ E +E + + + Sbjct: 501 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIIGFSRIIAESENTEERKEYYNIVEANNE 558 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L+ + + + D Sbjct: 559 RLLQLINEILDLSKIEAGIVEFSIAPVRLYPLCKEIHDAHVFRCPSDVELIFEPSDEDIR 618 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A G Q+ IF + G + Sbjct: 619 IDSDKNRIFQVISNLIGNAFKFTTHGSISYGYHQE-GENIIFHVTDTGTGIAPEKIGKVF 677 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 678 ERFVKANNFAQGTGLGLAICKTIIERLGGTISVTSELEKGTTFTFNLP 725 >gi|224825187|ref|ZP_03698293.1| osmosensitive K+ channel signal transduction histidine kinase [Lutiella nitroferrum 2002] gi|224602858|gb|EEG09035.1| osmosensitive K+ channel signal transduction histidine kinase [Lutiella nitroferrum 2002] Length = 890 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + S L L + + HD+ +P+ ++ + L + D + S Sbjct: 649 AQDALLAMESDRLRNTLLTTLSHDLRTPLTSLIGVADTLQRDDLADSARHELLQSLQDEA 708 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQV-----------IEDFIAVDKRVQVSWTGEKID 110 R+ + + + + + E Sbjct: 709 RRMGSLVGNLLDMARLQAEGVTLKKDWQSIEEVAGSALRQMSIPLARHAIATDLPPELPL 768 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + ++L+NL A P G +V +S + S+ NG + F Sbjct: 769 CEFDALLIERVLVNLLDNAAKYTPPGSEVRLSARVDGRWLAVSVSDNGPGLPPGDPTRLF 828 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ ES I + + + ++ E + + L Sbjct: 829 DKFTRGHGESAIPGVGLGLALCRTILDAHGGQIRAENRPEGGARFTFRLP 878 >gi|163800931|ref|ZP_02194831.1| sensor histidine kinase [Vibrio sp. AND4] gi|159175280|gb|EDP60077.1| sensor histidine kinase [Vibrio sp. AND4] Length = 680 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ DE G E + I Sbjct: 434 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNIELIQFELGDEAGRVQEEIDAI 493 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ + Sbjct: 494 HTQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIVDESITLVKTGTKKRDIEFVTDLQA 553 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M ++ GK+T+ +D + + G Sbjct: 554 RSSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVISEDWIEQGELKGVAIHVTDEGCGI- 612 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I + D + + + + E + S L K Sbjct: 613 KAESLGRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIKAESVWGKGSTFSVYLPK 668 >gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 758 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 67/234 (28%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + +++ S + H+I +P+ AI + LL + Q + + S S Sbjct: 142 QKEQEAINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDETTNPRYQQYLDIISNSGEN 201 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTG 106 L + ++ + I D I+ + V + Sbjct: 202 LLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPGANSKNITLTSFIDPTIAY 261 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 E + + +I+ N A G + + + + S++ G + + Sbjct: 262 EIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEARCDEGILSLSVRDQGIGIVLAD-QER 320 Query: 167 IVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D ++ + LAH + E + + + Sbjct: 321 IFDAFSQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTVGKGSLFTLKIP 374 >gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] Length = 590 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L ++ + + + +I S ++ + Sbjct: 366 FVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQQFLSIILTESQRMESLIQDLLDLSK 425 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS---WTGEKIDLSRERAKILL 120 + SVD L ++ + + + + S+ ++ + Sbjct: 426 VEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFV 485 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A GG V +S+++ + ++ G E +I + Sbjct: 486 NLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEIS-RIFERFYRVDKARSR 544 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + + S L K Sbjct: 545 NSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTFSVKLHK 585 >gi|224367709|ref|YP_002601872.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223690425|gb|ACN13708.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 998 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV-------MQLI 53 + ++ ++ + +L I HD + + AI +++L L + + D + Sbjct: 616 TEQELRKITKLESIGVLAGGIAHDYNNILSAIIGNIQLTLMDSNLTDRTQRFIKQALDAS 675 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112 + I L F + + + + D + Sbjct: 676 LRAKNLTIQLLTFSKGGRPVKKTASLVRLIRDFVDSTCRASNIACHCSFPDDLWPVEIDR 735 Query: 113 RERAKILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNLAR 159 + +++ L A ++P + + N S+K G Sbjct: 736 SQMGQVVQKLIQNACNAMPNGGTIEVSCQNVRSSPTKHPDIAPASNRVEMSIKDTGVGIA 795 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ ++ + + L Sbjct: 796 EN-LLDKIFDPYFSTNQPGRGLGLAICHSIVTQHNGQISVKSTPGKGSTFTVHLP 849 >gi|162450733|ref|YP_001613100.1| two-component system sensor protein [Sorangium cellulosum 'So ce 56'] gi|161161315|emb|CAN92620.1| two-component system sensor protein [Sorangium cellulosum 'So ce 56'] Length = 738 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 61/232 (26%), Gaps = 28/232 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII 62 + L+ + + + H+I +P+GAI + +LL + E + +I Sbjct: 480 DRLALLGQMAAGLAHEIRNPLGAIKGAAQLLADPVPEAQIDAASREFLGIILEEVDRLDR 539 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + + I + + + V+V+ ++ + + Sbjct: 540 VVGSVLDLARPAQGSVVPTDVNAIVRRTLQVLSIERRNDQLEVEVTLDPGLPRVAIDPEQ 599 Query: 118 ILLNLFM---VAHASL------------PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + L A ++ G + ++ NG Sbjct: 600 LRQVLMNLFRNAVQAMKGRGKVVISTRVRFGRGTRPGSGSDEPFVELNVTDNGPGISQK- 658 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + +A R+ + + +L Sbjct: 659 VLANIFLPFFTTKDKGTGLGLSISQRIAQSAGGRIEVRSYEGKGSTFAVILP 710 >gi|222054469|ref|YP_002536831.1| histidine kinase [Geobacter sp. FRC-32] gi|221563758|gb|ACM19730.1| histidine kinase [Geobacter sp. FRC-32] Length = 501 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 16/222 (7%), Positives = 59/222 (26%), Gaps = 18/222 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63 + L ++ + + I H+I +P+ I ++ ++ E ++ + Sbjct: 263 RADRLASVGEMAAGIAHEIKNPLTGIAAAITIIKEDFAPSDSRTTIVDEVLEQIKRLDKT 322 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + + + + ++ + + + +I Sbjct: 323 VNDLLFFGKPAQPEPAFTDINSTIRKTLKFASQHRGSKNIEKKLELQEDLPPVYVDPKQI 382 Query: 119 LLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 L + ++ + + ++ + +K G + +I Sbjct: 383 QQVLLNLILNAMQAMHDGGTLTIRSAFEKKEQDWVLIMVKDTGQGI-PAQILEKIFTPFF 441 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ L D L Sbjct: 442 TTKAQGTGLGLAICHKLVSQHNGTLTVSSEDGKGTEFIVSLP 483 >gi|46484678|gb|AAS98248.1| sensor protein [Listonella anguillarum] Length = 848 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 62/237 (26%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 ++ + + A +++ H++ +P+ I +LL + E ++ + + Sbjct: 465 KQSRLARQEAEESARIRAEFLAKMSHELRTPLNGILGVSQLLKREISDHEQLEQVNVLCS 524 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102 S L + ++ + + + + + I+ + + + Sbjct: 525 SGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEVISAVESIYRPLCAEKEIEFSLKSNI 584 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +IL NL A G Q + ++ S+ G R + Sbjct: 585 PPDMMIHSDQVRLNQILFNLLNNATKFTHHGLISIEFQQKNNHQLFISISDTGIGIREQD 644 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + S L Sbjct: 645 LALIFEPFTQVESNTTREYGGSGLGLAIVKSLIEMLGGAVNVKSQFGVGTTFSVELP 701 >gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 571 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 73/219 (33%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +P+ I + +E L + + +++I + +K + L Sbjct: 349 FVANVSHELRTPLATIKSYVETLLYNDVDTEYSKKFLRIIETETDRMTRLVKDLLLLSKM 408 Query: 74 TGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 +SL + + V ++ + ++ ++ ++ +N Sbjct: 409 DSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVDKDKVEQMAMN 468 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG + IS + F++K NG + +I + Sbjct: 469 IINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLP-RIFERFYRVDKARSRE 527 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K ++ E V++ L Sbjct: 528 LGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 566 >gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 577 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 73/219 (33%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +P+ I + +E L + + +++I + +K + L Sbjct: 355 FVANVSHELRTPLATIKSYVETLLYNDVDTEYSKKFLRIIETETDRMTRLVKDLLLLSKM 414 Query: 74 TGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 +SL + + V ++ + ++ ++ ++ +N Sbjct: 415 DSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVDKDKVEQMAMN 474 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG + IS + F++K NG + +I + Sbjct: 475 IINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLP-RIFERFYRVDKARSRE 533 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K ++ E V++ L Sbjct: 534 LGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 572 >gi|152974373|ref|YP_001373890.1| integral membrane sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023125|gb|ABS20895.1| integral membrane sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 462 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 16/223 (7%), Positives = 53/223 (23%), Gaps = 20/223 (8%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRL 64 + + + H++ +P+ + E+ + + + + Sbjct: 233 KERSEFLASVAHELRTPLTYVKGYAEIAQKRTTQPTEREKYLSIIKEEADYITNLVQDLF 292 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAK 117 ++ I L I + + + R + Sbjct: 293 ILAQMEKHNFLIEAKRIDLEKFLNRIVTKVNGIYVQKHLTVSLTCPPSLFITLDERRFEQ 352 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++N+ A+ +TI+V + S++ G + Sbjct: 353 VIMNILNNAYRHSAEYSVITITVTAYVSHIKISIQDTGEGIPPEDIPHIFERFYRVDKAR 412 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + + L + Sbjct: 413 SRATGGTGLGLAIVKEIVELHDGHITVSSKLNKGTCFTITLPR 455 >gi|319946569|ref|ZP_08020803.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641] gi|319746617|gb|EFV98876.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641] Length = 448 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 68/223 (30%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ I + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGAISEPVAPEFVKVSLTETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + + + + + Sbjct: 271 IDNETSQLDVELTNFTAFITFILNRFDKMKSQAGEKKYDIVRDYPISPVWVEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +L N+ A P GG++ + ++ + + I S+ G + +I D Sbjct: 331 VLDNILNNAIKYSPDGGEIRVGMKTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVDKA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|90413826|ref|ZP_01221813.1| putative sensor histidine kinase [Photobacterium profundum 3TCK] gi|90325137|gb|EAS41640.1| putative sensor histidine kinase [Photobacterium profundum 3TCK] Length = 681 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + ++S L AL L + I H+I +P I ++ELL D+ E + I Sbjct: 431 LNQAKIKLVASEKLAALGELTAGIAHEINNPTAVILGNVELLQLELGDDTLRVKEELDAI 490 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSW 104 + + G D + V E V Q+ Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEITWHHVNLIVEESLTLVRSGTKSYDVKVEAQLDA 550 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLA 158 + ++L+NL M ++ G + + +D ++ + + +G Sbjct: 551 KCCIEANRHQLLQVLINLQMNGVHAMDDKGLLKVKTEDWIDQSGEVLGAVVRVTDHGCGI 610 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + + + + E + + S L Sbjct: 611 -SKENLKRIFNPFFTTRRSGTGLGLSVSQGIISEIGGEIEVQSELGKGSTFSIYL 664 >gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 609 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 28/232 (12%) Query: 10 SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI 61 L A + + H++ +P+ I + E L++ +ED+ M +I+ + I Sbjct: 370 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGALEDKQMGPRFVGVIQNETGRMI 429 Query: 62 IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + T V+ L + D + ++V Sbjct: 430 RLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489 Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168 L R+ ++L NL A P GG +T+ ++ S+K G + +I Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDL-DRIF 548 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + ++ L Sbjct: 549 ERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLP 600 >gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2] gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2] Length = 609 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 20/221 (9%), Positives = 59/221 (26%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKFMRL--- 69 + + H++ +P+ I + E LD+ + + + R + I + + Sbjct: 381 FVANVSHELRTPLTTIRSYAEALDDGAMAEPQLAERFVGVIRNETERMIRLVTDLLHLSR 440 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +++ G+ + + ++L Sbjct: 441 LDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGMFVEQGIGKVVIDRDQIDQVLD 500 Query: 121 NLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 NL A P G + ++++ S++ G + +I + Sbjct: 501 NLMSNALKYTPEGGSIRIEARRNNEGMLAISVQDTGIGIPKKDL-DRIFERFYRVDKARS 559 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ E + L Sbjct: 560 RNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLP 600 >gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 956 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 +A+ + + L + + H++ +P+ A+ +++L + + Sbjct: 560 LARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWVQMLRTGNLPAGKHARALETV 619 Query: 58 MSAII---------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 +RL + + + D + + V Sbjct: 620 ERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEHALESVRPAADAKHIRLQAAV 679 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 T + ++ +++ NL A P+GG+V + V+ + ++ G+ Sbjct: 680 DSTSHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVERRDSSVDITVADTGHGIAAKF 739 Query: 163 KFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + DG+ + + V L + + + + L Sbjct: 740 LPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVELHGGTVSAFSEGEGKGATFTVTLP 797 >gi|302341501|ref|YP_003806030.1| response regulator receiver sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638114|gb|ADK83436.1| response regulator receiver sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 395 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 77/252 (30%), Gaps = 38/252 (15%) Query: 1 MAKNICFNLS-----------SMDLVAL--LCSRICHDIISPIGAI-------------- 33 M + + L +L + S + H+I +P+ I Sbjct: 128 MRQEQELEAQFRQEMQRRMNVAERLASLGTMASGVAHEINNPLAIISEAAGWLKGRLAKD 187 Query: 34 HNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI- 90 ++ + L + +++ + +S L F R D + D+ + Sbjct: 188 QSASDELRKAGELAISKILSSVERASRITHQLLDFARKNDWEIQEFDIVELASDVIDLTA 247 Query: 91 EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHAS--LPRGGKVTISVQDSKN 145 + +V++ I + + ++ L A + GG+ +SV + + Sbjct: 248 NAARDANCKVELHAKSRPIKVWSDPYQLRQVLINLLTNACQAVGTQGGGEAWLSVDSAGD 307 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIID 203 + + ++K G E T++ + + + + + R+ + Sbjct: 308 DVLIAVKDTGPGI-PKENLTRVFEPFFSTKPPGKGTGLGLSVSKGIVEKLGGRIEVDSRL 366 Query: 204 DHNVVLSALLEK 215 V L + Sbjct: 367 GSGAVFRVSLPR 378 >gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 609 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 28/232 (12%) Query: 10 SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI 61 L A + + H++ +P+ I + E L++ +ED+ M +I+ + I Sbjct: 370 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGALEDKQMGPRFVGVIQNETGRMI 429 Query: 62 IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + T V+ L + D + ++V Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489 Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168 L R+ ++L NL A P GG +T+ ++ S+K G + +I Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDL-DRIF 548 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + ++ L Sbjct: 549 ERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLP 600 >gi|322389964|ref|ZP_08063504.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903] gi|321143400|gb|EFX38838.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903] Length = 450 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 28/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115 + + L I + K + + Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +++ N+ A P GGK+ + ++ + + I S+ G + +I D Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMKTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVD 389 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 KARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 434 >gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 581 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKF----- 66 + + H++ +P+ I E L + +++I + + Sbjct: 360 FVANVSHELRTPVAVIKGYGETLLDGALEESPERSRRFVEIIVSHAERLTNLINDILTLS 419 Query: 67 ---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKIL 119 R A +D + + ++ED + + + ++L Sbjct: 420 KLEARDAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQLEQVL 479 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 LNL A P GG VT++ + + + ++ G + +I + Sbjct: 480 LNLLDNAIKYTPDGGDVTVAARLEQERVVVAVSDTGIGIPARDLP-RIFERFYRVDEGRS 538 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 539 REQGGTGLGLAIVKHIVQLHGGEVQVASEAGKGSTFTVTLP 579 >gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 965 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59 +N+ L + L + S I H++ +P+ AI +LL + + + ++ + Sbjct: 692 QNLQL-LEAARLKSQFVSTISHELRTPMNAIIGFSQLLLRQRQGSLTHQQADIMERIVNN 750 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGE 107 A L ++ + + L I + D + + + Sbjct: 751 AQHLLTLIKDMIDLSKIEAVCLELTLESLHLDRLIKETINEFRCLAAQKDLGLYIQTNLK 810 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +IL+NL G + + S + + +++ G + Sbjct: 811 NPIVINDSLRLRQILVNLVSNGIKFTEMGRVEVVVKEISTDWLMLTVRDTGIGIAENDLE 870 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L + + E + Sbjct: 871 HIFEEFQQIDQTTTRKYSGTGLGLAITESLVKLMQGTITVESKLGKGSTFHVKFPR 926 >gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 609 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 28/232 (12%) Query: 10 SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI 61 L A + + H++ +P+ I + E L++ +ED+ M +I+ + I Sbjct: 370 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGALEDKQMGPRFVGVIQNETGRMI 429 Query: 62 IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + T V+ L + D + ++V Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489 Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168 L R+ ++L NL A P GG +T+ ++ S+K G + +I Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDL-DRIF 548 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + ++ L Sbjct: 549 ERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLP 600 >gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 635 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + M ++ + + H+I +P+ AI E++ + + E +++I+ +S Sbjct: 271 AKRRAEDADRMK--SVFLANMSHEIRTPLNAIVGFSEIMVLTENEEEKHEYLEIIQKNSN 328 Query: 59 SAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + F + + + Q+ K V+ Sbjct: 329 LLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLKMKLNVDLKVVRPQGEFW 388 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L N A + G Q+ + + G + Sbjct: 389 TSTDRNRVMQVLFNFLSNAIKNTETGSITLGLKQE-GDWLKLFVSDTGCGIPEEKLPQIF 447 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 448 TRFEKLNDFVQGTGLGLSICKSIVERLGGRIEVSSELGQGSTFALYLP 495 >gi|229541285|ref|ZP_04430345.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325705|gb|EEN91380.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 534 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 71/227 (31%), Gaps = 15/227 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + ++++V L + I H+I +P+ A+ ++LL E+E + + Sbjct: 284 MQEQLRKS-DTLNIVGELAAGIAHEIRNPMTALKGFIQLLQNSMKEEEHSLYFNVITSEL 342 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDLS 112 + D+ +++ D I + ++ + D+ Sbjct: 343 ARIEAIITDFLVLAKPQAIQFQNHDVRKIMRDTIGLLNAQALMHNIQISCHFDEGLPDVY 402 Query: 113 RERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I + ++ + I + K S++ G +K ++ Sbjct: 403 CEGNQIKQVFINIIKNAIEVMPDGGKIDIAICYEKEKGLVHTSIRDEGEGI-PDDKIEKL 461 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+K + + L Sbjct: 462 GEPFYTTKERGTGLGLMISYKIIKEHKGFIQVQSKVREGTTFHIFLP 508 >gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 635 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + M ++ + + H+I +P+ AI E++ + + E +++I+ +S Sbjct: 271 AKRRAEDADRMK--SVFLANMSHEIRTPLNAIVGFSEIMALTENEEEKHEYLEIIQKNSN 328 Query: 59 SAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + F + + + Q+ K V+ Sbjct: 329 LLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLKMKLNVDLKVVRPQGEFW 388 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L N A + G Q+ + + G + Sbjct: 389 TSTDRNRVMQVLFNFLSNAIKNTETGSITLGLKQE-GDWLKLFVSDTGCGIPEEKLPQIF 447 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 448 TRFEKLNDFVQGTGLGLSICKSIVERLGGRIEVSSELGQGSTFALYLP 495 >gi|229113506|ref|ZP_04242955.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15] gi|228669924|gb|EEL25318.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15] Length = 387 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A +I + + + H++ +P+ I +++ + + + + Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQDQKHYLSI 208 Query: 57 SMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 K + F +L L +K + + ++ Sbjct: 209 IKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFS 268 Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++LNL A++ K+ + V D K +K G Sbjct: 269 CPEDLVLLLDEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEK 328 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ + + H + + LL+K Sbjct: 329 DLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILLKK 387 >gi|229125248|ref|ZP_04254354.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201] gi|228658208|gb|EEL13942.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201] Length = 387 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A +I + + + H++ +P+ I +++ + + + + Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQDQKHYLSI 208 Query: 57 SMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 K + F +L L +K + + ++ Sbjct: 209 IKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFS 268 Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++LNL A++ K+ + V D K +K G Sbjct: 269 CPEDLVLLLDEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEK 328 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ + + H + + LL+K Sbjct: 329 DLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILLKK 387 >gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|190015080|ref|YP_001966749.1| sensor histidine kinase [Bacillus cereus] gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus] gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820] gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803] gi|296506625|ref|YP_003667859.1| sensor histidine kinase [Bacillus thuringiensis BMB171] gi|42741618|gb|AAS45063.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|116584756|gb|ABK00871.1| sensor histidine kinase [Bacillus cereus] gi|116585027|gb|ABK01136.1| sensor histidine kinase [Bacillus cereus] gi|218540301|gb|ACK92697.1| sensor histidine kinase [Bacillus cereus AH820] gi|228618753|gb|EEK75715.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803] gi|296327212|gb|ADH10139.1| sensor histidine kinase [Bacillus thuringiensis BMB171] Length = 455 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A +I + + + H++ +P+ I +++ + + + + Sbjct: 217 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQDQKHYLSI 276 Query: 57 SMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 K + F +L L +K + + ++ Sbjct: 277 IKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFS 336 Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++LNL A++ K+ + V D K +K G Sbjct: 337 CPEDLVLLLDEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEK 396 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ + + H + + LL+K Sbjct: 397 DLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILLKK 455 >gi|255101001|ref|ZP_05329978.1| two-component sensor histidine kinase [Clostridium difficile QCD-63q42] Length = 900 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 +N + L + L + HD+ +P+ I ++ ELL V Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + +S + ++ V+ +I + A+ Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+NL + K+ I+V + + F + NG E Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + +K ++ E D L K Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897 >gi|254975464|ref|ZP_05271936.1| two-component sensor histidine kinase [Clostridium difficile QCD-66c26] gi|255092851|ref|ZP_05322329.1| two-component sensor histidine kinase [Clostridium difficile CIP 107932] gi|255314594|ref|ZP_05356177.1| two-component sensor histidine kinase [Clostridium difficile QCD-76w55] gi|255517268|ref|ZP_05384944.1| two-component sensor histidine kinase [Clostridium difficile QCD-97b34] gi|255650374|ref|ZP_05397276.1| two-component sensor histidine kinase [Clostridium difficile QCD-37x79] gi|260683488|ref|YP_003214773.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260687084|ref|YP_003218217.1| two-component sensor histidine kinase [Clostridium difficile R20291] gi|260209651|emb|CBA63346.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260213100|emb|CBE04496.1| two-component sensor histidine kinase [Clostridium difficile R20291] Length = 900 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 +N + L + L + HD+ +P+ I ++ ELL V Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + +S + ++ V+ +I + A+ Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+NL + K+ I+V + + F + NG E Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + +K ++ E D L K Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897 >gi|126699437|ref|YP_001088334.1| two-component sensor histidine kinase [Clostridium difficile 630] gi|115250874|emb|CAJ68699.1| Two-component sensor histidine kinase KdpD [Clostridium difficile] Length = 900 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 +N + L + L + HD+ +P+ I ++ ELL V Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + +S + ++ V+ +I + A+ Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+NL + K+ I+V + + F + NG E Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + +K ++ E D L K Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897 >gi|91203465|emb|CAJ71118.1| similar to two-component sensor histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 384 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + L + + + LL S + H++ +P+ I ELL E +++ + I+ S Sbjct: 153 LKSLQNQLLQAEKMASIGLLASSLAHELDTPLATISGYCELLLEEVHDEKALGKIKTISD 212 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKID 110 K R ++ DS I +I ++ ++ + Sbjct: 213 QIARCQKATRNLLIFSRKSDSEKKEYHINTLITTILALVEHRLKIHKINIRRAFDKQLPP 272 Query: 111 ---LSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +++LNL + +LP + + +++ + NG Sbjct: 273 LLVEGNQIQQVILNLVNNSVDALPNGGDLFIKTRMNNAEKSVEIVFEDNGTGIPEKY-HK 331 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + + D L Sbjct: 332 RIFEPFFTTKEQGKGTGLGLSICKDIISAHNGTIRLDNNTDKGTKFIISLP 382 >gi|148265666|ref|YP_001232372.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399166|gb|ABQ27799.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 522 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 19/226 (8%), Positives = 60/226 (26%), Gaps = 16/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSM 58 + S L +L L + I H+I +P+ I L+ + D ++++ + Sbjct: 290 QAQLIRSEKLASLGELVAGIAHEINNPLTGILVFSSLVSKDPKLDPSLKDDLEIVVQQTE 349 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKIDLSR 113 +K + + L I + + + + ++ + D+ Sbjct: 350 RCSQIVKGLLDFSRESVPQKKFSSLNRIMDMSLSLIERQVLFQNITITKDYSTDLPDMLL 409 Query: 114 ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ + + ++ + S+ G Sbjct: 410 DPNQVEQVFVNMILNAGQSMLDGGDLQICTGMTTDGCHEFVSISDTGCGISEENLVKIFD 469 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + +L Sbjct: 470 PFFTTKSTKGTGLGLSVSYGIINNHSGTIEVESKVGSGTTFTIMLP 515 >gi|317127327|ref|YP_004093609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315472275|gb|ADU28878.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 459 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 70/224 (31%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 K L S L A+ L + I H+I +P+ +I ++L+ + + E ++ Sbjct: 231 KKTEKLLLESEKLTAVGQLAASIAHEIRNPLTSIKGFIQLMKTSDDISKAEYFDILADEV 290 Query: 58 MSAI-------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + K F Y + + + VD +++ + Sbjct: 291 TRIELITGELLMLAKPQAHDFHYADISVIIEDVVTLLSSQALMNHVDFNMKIESLPKIKC 350 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + + +N+ ++P GG + I+V ++ + +K G +I Sbjct: 351 IENQLKQAFINVIKNGIEAMPHGGMIYITVNEADTNIVIEIKDEGLGIPKT-ILNKIGSP 409 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + + + L Sbjct: 410 FYTTKEKGTGLGMMTTIKIIQTHNGTFTISNTNKDGTTIRITLP 453 >gi|170724459|ref|YP_001758485.1| integral membrane sensor signal transduction histidine kinase [Shewanella woodyi ATCC 51908] gi|169809806|gb|ACA84390.1| integral membrane sensor signal transduction histidine kinase [Shewanella woodyi ATCC 51908] Length = 705 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 75/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48 + + +++ L AL L + I H+I +P I ++ELL E IE Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLKFELGQNADCVEEEIELV 511 Query: 49 VMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + Q+ R+S++ + + + + + V +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIIEEMLVLVRHSIKEQKVVLTQELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159 + + ++L+NL + A ++ G++ I D ++ G Sbjct: 572 SYPIEVNRPQLLQVLINLVVNAAHAMNEDGRIWIRTYDWVVKDEPIGVKIEVEDEGKGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ +I D + D + + + + + L Sbjct: 631 PKEQLNRIFDPFYTTRADGTGLGLSLSYGIIKRIGGTIEVSSTVGKGTLFTIGL 684 >gi|301053514|ref|YP_003791725.1| sensor histidine kinase [Bacillus anthracis CI] gi|300375683|gb|ADK04587.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 357 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLPEEKREHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ ++ +G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSGGTITIQLKEYGTLVEVRIRDSGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + + K Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFTVCIPK 353 >gi|94971483|ref|YP_593531.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94553533|gb|ABF43457.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 598 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 74/231 (32%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + S L ++ L + H+I +P+ AI +LL + ++ Sbjct: 361 LKSVKNQLVQSEKLASMGRLLAGAAHEINNPLTAILGYSDLLTSSISLDPQTRSMAEKIG 420 Query: 54 RLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + LKF + S D + + + ++ +V+V+ + Sbjct: 421 QQARRTKTLVEDLLKFSQETPTQRSSNDVQVLVLNAIKLAGLEAGKSVKVEVTAPDKLPP 480 Query: 111 LSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFT 165 ++ + + + ++L A ++ + + + ++ +G + P+ Sbjct: 481 VAVDPGQILQVFVHLIRNAADAMSESVVRVLHISTRAGSSQVQVEFADSGPGVKDPDL-- 538 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + ++ ++ + + L Sbjct: 539 -VFDPFYTTKSPGKGTGLGLSACYGIVQKHGGQITCANRPQGGAIFTVTLP 588 >gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis RP62A] gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis RP62A] Length = 565 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ D + +I S Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + I + D Q + + ++ Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 455 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + A+++ NL A KV + V + N+ ++ G + F + Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + + L Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIGVKSAPGKGSIFKVL 561 >gi|157692028|ref|YP_001486490.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032] gi|157680786|gb|ABV61930.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032] Length = 731 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49 K + + D +V L + I H+I +P+ A+ ++LL + Sbjct: 496 RKELEERVRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGNIEGEYSLYFNVITSE 555 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-K 108 ++ I +I K + + V + D+ + V + V Sbjct: 556 LKRIESIITEFLILAKPQAIVYEEKNVVQIVKDTMDLLHAQANLGNVQMHLNVMDEIPLI 615 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A +PR G V +++Q + SL+ G +K ++ Sbjct: 616 YCEQNQLKQVFINILKNAIEVMPRKGNVYVTIQRKGEEHIVISLRDEGCGM-AEDKLRRL 674 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + E + V L Sbjct: 675 GEPFYTTKERGTGLGLMVSYKIIEEHQGTIEVESEEGVGTVFHLTLP 721 >gi|328951885|ref|YP_004369219.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452209|gb|AEB08038.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1310 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + L S L +L L I HD + + AI ++ L E E + + + Sbjct: 934 RRAQEDRLRSSKLESLATLAGGIAHDFNNILTAILGNISLAKLERDEGERLTDAERACLQ 993 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRE 114 A + + L+ + ++ + F +V + + + Sbjct: 994 AKALAHQLLTFAKGGSPIMELLSVANLIRETASFACRGSQVVCEYDLPENLWMVHADAGQ 1053 Query: 115 RAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ NL + A ++P + + +++ G E Sbjct: 1054 LGQVFQNLVINAVQAMPMGGAVKILGENIIVEIGSNLPLNPGKYVKITVQDRGMGI-PTE 1112 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T+I D + + V + +K + E L Sbjct: 1113 YLTRIFDPYFTTKQMGSGLGLATVYSIIKAHKGHIAVESTLGLGTAFEVYLP 1164 >gi|295703363|ref|YP_003596438.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM 319] gi|294801022|gb|ADF38088.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM 319] Length = 726 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQ 51 M + I + ++ +V L + I H+I +P+ A+ ++LL+ ED ++ Sbjct: 503 MQEQIRKS-DTLQVVGQLAAGIAHEIRNPMTALKGFVQLLESSIQEDHSLYFDIIKSELK 561 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110 I ++ K + F + D+ + + VS Sbjct: 562 RIETIITEFLVLAKPQAVKFEKKNLAAVVKETIDLLNAQALLENIQFELSVSPQLPMVYC 621 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVD 169 + ++L+N+ A GG++ + V ++ + S++ G+ E+ ++ + Sbjct: 622 EPNQIKQVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIRDQGDGM-PEERIKRLGE 680 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+K R+ E +L Sbjct: 681 PFYTTKEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGTAFHVILP 725 >gi|258593856|emb|CBE70197.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 448 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 26/248 (10%), Positives = 68/248 (27%), Gaps = 35/248 (14%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + ++ + L +L L + + H++ +P+ ++ E L E+ L L+ Sbjct: 177 LKQSQQLLVRQEKLASLGRLAAGLAHELNNPLSSVAGFAEALQRRIETAEIGDLAALAEW 236 Query: 59 SAI----------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 L F R VD +E +++ + V Sbjct: 237 RQYVTMIQDEVARAATIVRRLLDFARQREPTFSLVDLYDVALHAVSFVERQASLENQRIV 296 Query: 103 SWTGEK----IDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIF 149 ++ ++ LNL A ++ + + + Sbjct: 297 VAPFPDRSVVQADAQMLQQVFLNLLTNALDAIESGGEIRINAYHRQEAVDPAGEQRWLDV 356 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIID-DHN 206 + G+ P+ +++ D + + + ++K + Sbjct: 357 FVSDTGSGI-SPDNLSRVFDPFFTTKEVGKGTGLGLAISQSIVEQHKGSIEVRSRGIGKG 415 Query: 207 VVLSALLE 214 + L Sbjct: 416 TTVIVSLP 423 >gi|294498010|ref|YP_003561710.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM B1551] gi|294347947|gb|ADE68276.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM B1551] Length = 726 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQ 51 M + I + ++ +V L + I H+I +P+ A+ ++LL+ ED ++ Sbjct: 503 MQEQIRKS-DTLQVVGQLAAGIAHEIRNPMTALKGFVQLLESSIQEDHSLYFDIIKSELK 561 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110 I ++ K + F + D+ + + VS Sbjct: 562 RIETIITEFLVLAKPQAVKFEKKNLAAVVKETIDLLNAQALLENIQFELSVSPQLPMVYC 621 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVD 169 + ++L+N+ A GG++ + V ++ + S++ G+ E+ ++ + Sbjct: 622 EPNQIKQVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIRDQGDGM-PEERIKRLGE 680 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+K R+ E +L Sbjct: 681 PFYTTKEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGTAFHVILP 725 >gi|229087950|ref|ZP_04220060.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44] gi|228695363|gb|EEL48238.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44] Length = 609 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 65/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 383 FVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 442 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121 L + + D + D + K V + + + ++L N Sbjct: 443 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFSKKSRFIDMDGDKITQVLYN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG VT ++D ++ S+ G E +I + Sbjct: 503 IISNALKYSPEGGTVTYRLRDREDMLEISVSDQGMGI-PKENVEKIFERFYRVDKARSRQ 561 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 562 MGGTGLGLAIAKEMIVAHGGSIWAKSEEGKGTTIYFTLP 600 >gi|254412023|ref|ZP_05025798.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180989|gb|EDX75978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 426 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + +L + S + H+ +P+ I +S E+L+ + + Sbjct: 185 LRQELAEQHELSELKSRFLSTVSHEFRTPLTTILSSSEMLERYSDRLSPERKAVHFQKIS 244 Query: 61 IIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + L + + + Sbjct: 245 QSVDYMTQLLEDILIYSKADAEKLEFNPTVVNLSEFCQTLVEDLHLEAANKERIQLKCND 304 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + +IL NL A P+G V + +N+ I ++ G + Sbjct: 305 DDICGNFDPKLLRQILSNLLTNALKYSPKGDPVDFELNREENQAILLIRDRGIGIPANDQ 364 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F TI+ + V ++ + + D + + L Sbjct: 365 VHLFEPFHRAQNTGTINGTGLGLAIVKKAVDLHQGMISVQSEIDVGTIFTVNLP 418 >gi|323697584|ref|ZP_08109496.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323457516|gb|EGB13381.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 571 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 78/238 (32%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIE-------D 47 M+K I + + L A+ L + I H+I +P+ + + +LL++ G + Sbjct: 321 MSKQI---VETGKLAAIGELAAGIAHEINNPVAIMIEEAGWVSDLLEDEGQDLPSYGEIK 377 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106 + + + + + + + + D + V+E + + QV + Sbjct: 378 RALTQVGNQGRRCKDITHKLLSFARQSDTRATEMSVPDFIREVVEISMQQARFAQVDFDL 437 Query: 107 EKIDLSRER-------AKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLA 158 + + ++LLNL A ++ G K+ I + + +++ G Sbjct: 438 DLDESMPRISASATELQQVLLNLVNNAIQAMEPDGGKLFIRCGVEEGQAAITVEDTGPGI 497 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + H+ + E + L Sbjct: 498 PAANL-ARIFDPFFTTKPVGKGSGLGLSICFGIIHQMGGEIDVESTVGKGTRFTIRLP 554 >gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 914 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + L + + + H+I +P+ AI ++ E E+E + + Sbjct: 512 MKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTNEEERLGYYEIV 571 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + V +I + + Sbjct: 572 ESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPKGVELIYEPS 631 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEK 163 E I + ++ +I + + + ++ F + G P+K Sbjct: 632 DENIVIDGDKNRIFQVISNLIGNAFKFTTAGHISYGYHQEGKYVAFHVTDTGMGI-APDK 690 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V + + + + + +L Sbjct: 691 VDRVFERFVKVNNFAQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLP 743 >gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681] gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681] Length = 609 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 58/221 (26%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKFMRL--- 69 + + H++ +P+ I + E LD+ + + + R + I + + Sbjct: 381 FVANVSHELRTPLTTIRSYAEALDDGAMAEPQVAERFVGVIRNETERMIRLVTDLLHLSR 440 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++ G+ + + ++L Sbjct: 441 LDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIGKVVIDRDQIEQVLD 500 Query: 121 NLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 NL A P G + ++S+ S++ G + +I + Sbjct: 501 NLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDL-DRIFERFYRVDKARS 559 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ E + L Sbjct: 560 RNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLP 600 >gi|317154598|ref|YP_004122646.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944849|gb|ADU63900.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 777 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 68/245 (27%), Gaps = 33/245 (13%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K + L S + AL L I HD + +G I E+++ D ++ Sbjct: 394 KRMEEQLRQSQKMEALGTLAGGIAHDFNNILGVILGYAEIIESGAEPDSGLERRVREISR 453 Query: 60 --------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110 L F R V + + +++ + + + ++ + Sbjct: 454 AGKRARDLVNQILNFSRQGPQERHPVTLTPLIKEALKLLRSSVPANVEIISRIETDQDNV 513 Query: 111 --LSRERAKILLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSLK 152 + +I+LNL A ++ + + S+ Sbjct: 514 LVDPTQMHQIMLNLCGNASHAMGESGGTLTVTLTDVRDADPVLPPADLGRPERFVRLSVA 573 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G P+ +I D + + + V + + L E Sbjct: 574 DTGPGI-DPDVVGRIFDPFFTTKPQGEGTGMGLAMVHGIVKRHDGYLELENHPGAGAAFH 632 Query: 211 ALLEK 215 LL + Sbjct: 633 VLLPR 637 >gi|229085933|ref|ZP_04218157.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44] gi|228697369|gb|EEL50130.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44] Length = 458 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 73/235 (31%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENVTEEEQKHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + + Sbjct: 285 SKRMSSLCKQLLTLASLDKEETVLQVKEFNLQKQIKDVVFMLEWKWREKDIAVEFDVPNM 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ + ++ NLF + +GG + + ++ +N S+ +G E + Sbjct: 345 NITGDENLLHQVWANLFTNSIKFTDQGGTIEFAAKELENSVEISVSDSGIGMEQEEVN-R 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + E + K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVHKIVELHHGIISVESKKGEGTTFRIEIPK 458 >gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] Length = 497 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 63/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--SM 58 + + + S +L ++ + + H+I +P+ AI LL + +I + Sbjct: 261 LNEALRKARRSDELKSIFLANMSHEIRTPLNAIVGFSSLLAYGESDLTKEDIIEFTSLIE 320 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + SV L +I + + + G Sbjct: 321 KNSRLLMVLISDILDLSKIESNTMEFSFCSVSLHRVLNEIGSAQRINMREGVELLLDLPG 380 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ + + ++++ NL A G + ++ G E Sbjct: 381 QEVTVYTDPARLSQVINNLVNNAIKFTSEGNIRIGYRPAASGYVNIFVEDTGTGM-SREV 439 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + L Sbjct: 440 LEHIFDRFYKGDSFKQGTGLGLSICKTIVKRFEGKIEVTSTPGKGTCFTITLP 492 >gi|219667423|ref|YP_002457858.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219537683|gb|ACL19422.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 463 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+++ L L + I H++ +P+ +I + +E + + E + +I Sbjct: 225 MAESLK---KQERLRKQLTADIAHELRTPLTSIRSYIEAFQDGVLPADKENLAIINEEIE 281 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + +R + ++ + + + Sbjct: 282 RLTRLSSDLKDLNVAEMGALRPYLTQVNLSALIDKTVNMLSPLIQEKGISLTWHKPESIL 341 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 ++ NL A+ GK+ + ++ E + ++ +G + F Sbjct: 342 IEGDEYLLTRLFYNLLHNAYKFTESPGKIEVQMELRHQEVLITISDSGIGIPEEDLPFIF 401 Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I +A ++ L E D LL Sbjct: 402 ERFYRSEKSRSRETGGTGIGLALAQQIALLHQGTLTVESCPDKGSRFMLLLP 453 >gi|257453593|ref|ZP_05618883.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus SK60] gi|257449051|gb|EEV24004.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus SK60] Length = 442 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 62/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + + H++ +P+ I +E L ++ ++ + + + + + Sbjct: 209 FVANVSHELRTPLTVIMGYVETLSEQPELDPRIARAFTQMMQQSQRMNNIINDLLLLSRL 268 Query: 77 VDSL--------------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + + L D Q+ + + T + L NL Sbjct: 269 ENDEKPAEPKDIDIPKMLMQLFDDAQMYNKSYDHMIHLHIDSTLHILGYEDYLRSALSNL 328 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176 A P+GG+++IS + FS+ NG ++ + Sbjct: 329 ITNAMKYTPKGGEISISWHEYDAGVCFSVTDNGIGIEQRHI-QRLTERFYRVDTGRSRET 387 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +++ L + K Sbjct: 388 GGTGLGLAIVKHVLYQHHATLDITSTVGKGSTFTVTFPK 426 >gi|320353266|ref|YP_004194605.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121768|gb|ADW17314.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 584 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 33/239 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSA 60 + S + A+ L I HD + + I EL+ +E ++ I +S A Sbjct: 329 VQSQKMEAIGTLAGGIAHDFNNILAGIMGYAELMQRDLARASTSRFNEYLRNILFASERA 388 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------EKIDLSRE 114 ++ + + +V + + + + + I ++ I + Sbjct: 389 QHLIRQILAFSRQSPTVMQPVRMRQVIEEVILLIRASLPTTIAIETRLRSESCVIADQVQ 448 Query: 115 RAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKINGNLA 158 ++L+NL A ++ + + G Sbjct: 449 MHQVLMNLCTNAGQAMKHQGGTLTIRLDDVVLDQQIADCHQRLEPGPFVRIQVSDTGQGI 508 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D + + + V + K +L E + + L + Sbjct: 509 -PEHIRDRIFDPFFTTKPQGEGTGLGLSMVHGIVSAMKGCILVESTEGRGSCFTLYLPR 566 >gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 914 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + L + + + H+I +P+ AI ++ E E+E + + Sbjct: 512 MKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTDEEERLGYYEIV 571 Query: 57 SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + L+ + + D Sbjct: 572 ESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPEGVELIYEPS 631 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ NL A G ++ + F + G P+ Sbjct: 632 DENIVIDGDKNRIFQVISNLIGNAFKFTTT-GHISYGYRREGKYVAFHVTDTGMGI-APD 689 Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 K ++ + V + + + + + +L Sbjct: 690 KVDRVFERFVKVNNFAQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLP 743 >gi|253699311|ref|YP_003020500.1| histidine kinase [Geobacter sp. M21] gi|251774161|gb|ACT16742.1| histidine kinase [Geobacter sp. M21] Length = 542 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 16/229 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 + + S L +L L + I H+I +P+ I L+ + + Sbjct: 287 TQMQAQLIRSEKLASLGELVAGIAHEINNPLTGILVFSSLIQSNKKLDETLRNDIDTVIR 346 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGE 107 + +K + + L L I + I S + Sbjct: 347 ETKRCAGIVKGLLEFARCSPPQKELHSLSGISEAALTLIRHQILFQDVTIVREYASDLPK 406 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFT 165 + + + ++L+N+F+ A ++ G + IS + NG Sbjct: 407 ILIDANQIEQVLVNMFVNAGHAMLGEGVLHISTGVASDGGAAFIRVVDNGCGIPDDHLTK 466 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ R+ + L Sbjct: 467 IFDPFFSTKANKGTGLGLSVSYGIVQEHGGRIDVTSKIGAGTAFTVTLP 515 >gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] Length = 608 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++H+ +E L E ++ ++ L R Sbjct: 378 FVSNVSHELRTPLTSMHSYIEALSEGAWKNPEVAPDFLKVTLEETDRMIRMINDLLNLSR 437 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 + G + + + + D ++ D + + +T + L + ++ Sbjct: 438 MDSGTSELQLEYVNFNELVNFVLDRFDMMLDKEKKNYTIDREFTRRDLWLEIDTDKIIQV 497 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VE 173 L N+ A P GGK+T + ++ N +FS+ G + F + + Sbjct: 498 LDNILNNAIKYSPDGGKITCRLLETHNNAVFSVTDQGLGIPKKDIAKVFDRFYRVDKARA 557 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 558 RKQGGTGLGLAISKEVIRAHNGFIWVESEEGKGSTFYISLP 598 >gi|323495058|ref|ZP_08100147.1| C4-dicarboxylate transport sensor protein [Vibrio brasiliensis LMG 20546] gi|323310715|gb|EGA63890.1| C4-dicarboxylate transport sensor protein [Vibrio brasiliensis LMG 20546] Length = 594 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + L D+ + Sbjct: 360 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGKRFLARQSYERVDDNLSR 419 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTG 106 I + +R + S + + A +++ Sbjct: 420 ISALTDRMAKISNQLRSFTRKSDSNEVSKLDIKPLILSAKELLAAQCKAKQVDLRLDLEQ 479 Query: 107 EKID---LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + + + ++L+NL A +L + + TI + S + + NG + Sbjct: 480 QLPNVELNPIQFEQVLINLVTNAMQALEQQDQRTIEISATVSDSHIAIFVDDNGPGIAYS 539 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ + + + + + + L L Sbjct: 540 EQHQ-LFEPFYTTKKNGLGLGLSISQQITQAMGGTLDIADSPLGGARFVITLP 591 >gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 417 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 64/226 (28%), Gaps = 17/226 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E E + I++ + Sbjct: 187 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 244 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +VD +I + + + + + + Sbjct: 245 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKVGKGVELILEEPFPECY 304 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + +++ N A +G Q S + F ++ G ++ + Sbjct: 305 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 364 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + E + Sbjct: 365 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVESTEGVGSCFWFT 410 >gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] Length = 607 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 66/231 (28%), Gaps = 25/231 (10%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 L ++ + + H++ +PI +I + E L ++ + + +I + Sbjct: 375 EQQKLESMRREFVANVSHELRTPITSIKSYTETLLDGAVEDHETSNRFLSVIDSEADRMT 434 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + M + + + ++ V I+ Sbjct: 435 RLVKDLLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKIESQRKNQKLESYVIGDIPVIN 494 Query: 111 LSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 ++R ++++NL + G++T+ V N+ + +G P F + Sbjct: 495 ADKDRLEQVVVNLISNSIKYTAEYGEITVYVGKIYNDVYMKVTDSGIGIPGESLPRVFER 554 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + + + + Sbjct: 555 FYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEVGKGTEVVVKIPR 605 >gi|156974548|ref|YP_001445455.1| hypothetical protein VIBHAR_02266 [Vibrio harveyi ATCC BAA-1116] gi|156526142|gb|ABU71228.1| hypothetical protein VIBHAR_02266 [Vibrio harveyi ATCC BAA-1116] Length = 680 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ +E E + I Sbjct: 434 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGEEASRVQEEIDAI 493 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ + Sbjct: 494 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDIEFVTDLQA 553 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M ++ GK+T+ +D + + G Sbjct: 554 HTSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVVSEDWIEDGELKGAAIHVTDEGCGI- 612 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++I + D + + + L E S L K Sbjct: 613 KPENLSRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 668 >gi|78221916|ref|YP_383663.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193171|gb|ABB30938.1| histidine kinase [Geobacter metallireducens GS-15] Length = 248 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 76/227 (33%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61 + + + L + + + H++ +P+ I ++ ++ L E + + V +++ + A Sbjct: 20 LELLAFNEKMAELGRMAAGVVHELNTPLSVIVSATQMILREEELPEFVREMVERVNEEAH 79 Query: 62 IRLK-------FMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + F R G D+ + + + + V ++ Sbjct: 80 RLAELTKGVLSFARRDSGGRAEADANQVIGEVMTFLRFEAGKRSIGVIEDLDHRLPFIAA 139 Query: 114 ERA---KILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++++NL M A ++ GG + +VQ+S+ + G P+ +I Sbjct: 140 DANRVKQVIINLVMNAFQAMGEGGTLFLRTVQESETAVTVQVADTGPGI-PPDAQERIFT 198 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + + + + Sbjct: 199 PFFTTKEPGEGTGLGLFITRKLMEGIGGAIAVKSVVGEGTTFTLTFP 245 >gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36] gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36] Length = 550 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 66/237 (27%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54 M +I L L A S + H++ SP+ +I S+ LL + ++++ Sbjct: 295 MLHDITERLEQEQLQADFISMVSHELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAH 354 Query: 55 LSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ ++ + + + S L + F K V Sbjct: 355 RNADRLVLIINDILDMEKISSGRLDFELETADLSELVAESLRANATAHQRFGLQIKCHGV 414 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++L NL A GG V ISV + S++ G + Sbjct: 415 DTPTYIETDANRIIQVLTNLMSNAAKFSKPGGTVEISVDKTPENVCVSVRDEGMGIAPED 474 Query: 163 KF---TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + + + + L Sbjct: 475 QHKIFQRFADMANSDRATKGGTGLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLP 531 >gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 510 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56 ++I + + S + H++ +P+ ++ SL LL ++ + Sbjct: 271 EDITQRQAVERMKNEFISLVSHELRTPLTSMRGSLGLLKMGVYDNQPDKAKRMLDIAVTD 330 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTG 106 + L +G V + + D+ +I+ + + + + Sbjct: 331 CDRLGRLVNDILSLERLDSGQVTLVKEVCDVADLIKHSVEAIDAIAEAAGIAIQVTPLSA 390 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + L NL A +T+ VQ + +F + G E + Sbjct: 391 QVYVAPDTIIQTLTNLLSNAIKFSESNTTITVGVQHQSDCILFHVTDQGRGI-PTEHLER 449 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ + E L Sbjct: 450 IFGRFQQVDVSDSRQKGGTGLGLAICRSIIQQHGGGIWAESTLGSGSTFYFTLP 503 >gi|157373267|ref|YP_001471867.1| integral membrane sensor signal transduction histidine kinase [Shewanella sediminis HAW-EB3] gi|157315641|gb|ABV34739.1| integral membrane sensor signal transduction histidine kinase [Shewanella sediminis HAW-EB3] Length = 705 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + +++ L AL L + I H+I +P I ++EL+ D +E + L+ Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELMKYELGDRAEDVEEEIDLV 511 Query: 54 RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + + + + V +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIIEEMLVLVRHSIQEQKVILNQELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159 + + ++L+NL + A ++ G++ I D ++ G Sbjct: 572 SYPIEVNRPQLLQVLINLVVNAAHAMDEEGRIWIRTYDWVQRGEPIGVKIEIEDEGKGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ ++I D + D + + + + + L Sbjct: 631 PQEQLSRIFDPFYTTRADGTGLGLSLSYGIIKRIGGTIEVSSTVGKGTLFTIGL 684 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 68/240 (28%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56 ++I + S + H++ +P+ +IH SL +L ++Q+ S Sbjct: 804 RDITERKQVEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSTTSEQGKRLLQIATDS 863 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KR 99 + + + + D + +++ Sbjct: 864 TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSIQNSNS 923 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 S + + + L NLF A G V + + K++ + +++ G Sbjct: 924 SSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDTGRGIP 983 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + D + + ++ ++ + + L Sbjct: 984 EDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVLGQGSSFYFTLP 1043 >gi|147678113|ref|YP_001212328.1| membrane signaling protein [Pelotomaculum thermopropionicum SI] gi|146274210|dbj|BAF59959.1| membrane signaling protein [Pelotomaculum thermopropionicum SI] Length = 546 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 66/221 (29%), Gaps = 13/221 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M K + L ++L+ + + I H+I +P+ + L+LL + + L Sbjct: 323 MEKEMA-RLEQLNLIGEMAAGIGHEIRNPMTTVRGFLQLLCGKKEFSKYREYFSLMIDEL 381 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---- 116 + + + + Q++ + + + + Sbjct: 382 DRANSIITEYLSMAKNKPVDKKMQSLNQLLSAMAPLIEADAIKNNNYIKMELSDIPDLLL 441 Query: 117 ------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++LNL ++P G + I NE I S+K G+ +I Sbjct: 442 DEKEIRQLVLNLVRNGLEAMPPGQNLIIKTYMEDNEVILSVKDQGHGIEPG-VLEKIGTP 500 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + +A + + E Sbjct: 501 FFTTKDNGTGLGLAVCYSIAARHNASIKVETSP-KGTTFYI 540 >gi|86156846|ref|YP_463631.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773357|gb|ABC80194.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1527 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 +A + L AL L + + H++ +P+G I NSL +L G ++ ++ Sbjct: 1283 LAHAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRMLRPQGDARMLLDIVG 1342 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R + + + + Sbjct: 1343 EEADRLNRIVGDLLDFARPSTPEVRPEPLDRVVEEALATALAQNGQPIEILREVDPALPQ 1402 Query: 111 LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + + + VA + +PRGG++T+ ++ + + L+ G E +I Sbjct: 1403 VPMDARLVRQAVVNVAVNAVQAMPRGGRLTVRLRRDGDAAVLELEDTGAGI-PEEVRGRI 1461 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + + Sbjct: 1462 FEPFFTTKASGTGLGLAVVRRIVEGHGGEVAVTSRPGAGTAFALRFP 1508 >gi|49480228|ref|YP_034908.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331784|gb|AAT62430.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 463 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454 >gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] Length = 828 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 56/228 (24%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI LL + ++ M ++ ++ Sbjct: 601 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVQGENPEEREQYMAIVEENNE 658 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGE 107 + + +D D+ + ++ V Sbjct: 659 LLLQLISDILDLSKIEAGTFDFVKQELDVNQLCEDMVRTMKLKARPGVEVVFDHRLPECI 718 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++ N A G Q N F + G ++ Sbjct: 719 IVSDRNRLNQVIANFMNNAIKFTSTGSIRLGYGQAETNLLRFYVADTGIGIIQEKQAEIF 778 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + E L Sbjct: 779 DRFVKLNSFVHGTGLGLSISKSIVEQLGGTIGVESESGKGACFWFTLP 826 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 74/233 (31%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56 ++I + S + H++ +P+ +IH SL +L + ++++ S Sbjct: 1112 RDITERKQIERMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLPADSEQGRRLLEIATDS 1171 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTG 106 + + + + +G V ++ +IE +++ + + + Sbjct: 1172 TERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAGVKLSVSHPSI 1231 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + + L NL A V + Q +E + ++K NG + Sbjct: 1232 QLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQQYGDELLVTVKDNGRGIPADKLDSI 1291 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + D + + ++ R+ E + L Sbjct: 1292 FERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRIWAESVLSEGSNFYFTLP 1344 >gi|303247119|ref|ZP_07333394.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio fructosovorans JJ] gi|302491545|gb|EFL51430.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio fructosovorans JJ] Length = 611 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 66/229 (28%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 M + L A+ L + + H+I +P+ +I ++ + ++ Sbjct: 372 MRRLEAEIRRREKLAAVGNLAAGVAHEIRNPLSSIRGYAAYFGAKFAPGSEDRQAAEVMV 431 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109 + + + ++F R + V ++ D A V ++ E Sbjct: 432 REVDRLNRVISELIEFARPSDIKRRPVRLSELASHAARLTLPDATARGVSVDIAGAVEGP 491 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFT 165 ++ + ++ L + ++ + S+ G E+ Sbjct: 492 EILADPDRLTQALLNLCLNAIQAMQAGGVMTLATGTAPDGRAFLSVADTGGGIDDMER-D 550 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + ++ + V + L Sbjct: 551 RIFDPYYTTKPHGTGLGLPIAHKIVAAHGGEIVLAARPEGGTVATVYLP 599 >gi|228998006|ref|ZP_04157607.1| hypothetical protein bmyco0003_25750 [Bacillus mycoides Rock3-17] gi|229005563|ref|ZP_04163273.1| hypothetical protein bmyco0002_24980 [Bacillus mycoides Rock1-4] gi|228755663|gb|EEM04998.1| hypothetical protein bmyco0002_24980 [Bacillus mycoides Rock1-4] gi|228761739|gb|EEM10684.1| hypothetical protein bmyco0003_25750 [Bacillus mycoides Rock3-17] Length = 458 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57 K + ++ +D + S + H+ SP+ +I + L +Q+I S Sbjct: 226 KKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEKMTEDERKRYLQIIEGES 285 Query: 58 MSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 K + + + ++ +K + V + I+ Sbjct: 286 KRMSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDIAVEFDVPSIN 345 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++ N+F + GG + +V++ + + ++ +G E +I Sbjct: 346 VRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEESVVIAISDSGIGMEQEEV-ERI 404 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D ++ + V + + ++ E I L K Sbjct: 405 FDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGKVSVESIRGEGTTFRIELPK 458 >gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 546 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 52/217 (23%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKF---------- 66 S I H++ +P+ I E + + + + +++ A + Sbjct: 321 SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRI 380 Query: 67 ----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 +RL + + + + ++ NL Sbjct: 381 AAGGLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDDMPPVYADYERLRQVFTNL 440 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE--STID 177 A P GG + I + I + G E F + + Sbjct: 441 IENAVKYSPNGGTIRIGARAEGEMAIVYVADQGIGIPPEEQDLIFERFYRVDNRLRRDRP 500 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + R+ E L Sbjct: 501 GSGLGLYITRAIVEAHGGRIWVESQVGRGSRFLFTLP 537 >gi|153953972|ref|YP_001394737.1| PhoR [Clostridium kluyveri DSM 555] gi|219854586|ref|YP_002471708.1| hypothetical protein CKR_1243 [Clostridium kluyveri NBRC 12016] gi|146346853|gb|EDK33389.1| PhoR [Clostridium kluyveri DSM 555] gi|219568310|dbj|BAH06294.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 575 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + + H++ +P+ +I E L ++V ++ + +I + + + Sbjct: 344 ENMRSQFVANVSHELKTPLTSIKGFAETLKYVEDVENRNKFLNIIDDEAERLTRLINDIL 403 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 +D + D+ +++ F + E D+ + ++ Sbjct: 404 TLSHIESNEMDKIEFIDINGIIDDVCYMMKPFADKKHIKIKKISCEMPDIWGDADRFKQM 463 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 ++NL A GG V + +N+ + ++ NG E ++ + Sbjct: 464 VINLVDNAIKYTNNGGWVKVGTAFQENDCLIWVEDNGVGI-SKEHQERLFERFYRVDKAR 522 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + Sbjct: 523 SRSQGGTGLGLAIVKHITLKFSGTIELNSEIGKGSKFTVRIP 564 >gi|108759412|ref|YP_633337.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108463292|gb|ABF88477.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 578 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 + ++S + A + R+ H+I +P+ I SLE L Sbjct: 346 LKATTERLMASERIAAWQEVARRLAHEIKNPLTPIRMSLETLQAAQEAKHPRFQDMFKES 405 Query: 56 ------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108 + + + LG++ Q + A + Sbjct: 406 AGVVLEEVDRLRRIVDEFSHFARMPKPQLAPVDLGELAQSVLALYATPPTGIQILPTLQT 465 Query: 109 ----IDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L+NL A ++ GG + + V+ ++ + I ++ +G E Sbjct: 466 GVVARVDRDQLTQVLVNLVKNAEEAMASTGGTLRVRVRSTEADAIVEVEDSGPGIPL-EH 524 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + E+ +L H S +L + Sbjct: 525 RARIFEPYFTTKDGGTGLGLAIASRILQEHGGKLEVGGEPGHGARFSLVLPR 576 >gi|91200750|emb|CAJ73802.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 1066 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 21/233 (9%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 K + + S L ++ L + I H+I +P+GAI NS+ +LD G + +++++I Sbjct: 820 RKRMEDQVRRSEKLASMGELAAAIAHEIRNPLGAICNSVGILDSHLKLSGQDMDLLEMIV 879 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWT 105 S + L + I + + DKR + + Sbjct: 880 GESERLDRIISDFLSFAHPREPSLVLQDIKGIIKNTIFLLGQDKRFTDKIEIKEIYETVL 939 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFP 161 + + +IL NLF+ + ++P GG++ I V+ + +N + NG Sbjct: 940 PKVYIDTDLIHQILWNLFINSLDAMPDGGRIRIVVRKTTLFLRNAIEIIISDNGIGMAEH 999 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + V + E+ + + L Sbjct: 1000 EIN-KVFEPFYTTKSEGTGLGLSVVQRIIDEHGGTIDVKSKYGRGTAFYIKLP 1051 >gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp. NAS-14.1] gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp. NAS-14.1] Length = 550 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54 M ++ L L A S + H++ SP+ +I S+ LL + ++++ Sbjct: 295 MLHDVTERLEQERLQADFISMVSHELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAH 354 Query: 55 LSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ ++ + + + S L + F K V Sbjct: 355 RNADRLVLIINDILDMEKISSGRLDFELETADLSELVAESLRANATAHQRFGLQIKCHGV 414 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++L NL A GG V ISV+ + S++ G + Sbjct: 415 DTPTYIETDANRIIQVLTNLMSNAAKFSKPGGTVEISVEKTPENVCVSVRDEGMGIAPED 474 Query: 163 KF---TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + + + + L Sbjct: 475 QHKIFQRFADMANSDRATKGGTGLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLP 531 >gi|229816269|ref|ZP_04446578.1| hypothetical protein COLINT_03320 [Collinsella intestinalis DSM 13280] gi|229808120|gb|EEP43913.1| hypothetical protein COLINT_03320 [Collinsella intestinalis DSM 13280] Length = 502 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 70/237 (29%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA N+ +L L S + H++ +P+ A+ ++E + + + E ++ + + Sbjct: 257 MAANLERDLKRER---RLTSDVAHELRTPLMAMQATVEAMQDGVYPTDAEHLETVASETR 313 Query: 59 SAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106 ++ + +D + + ++ + + + Sbjct: 314 RLARLVQQTLDLSRQENHAAPLRLDQVDIVQLTRTIVNNQHQLFHNKGLHLRFADEMQGR 373 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++NL A P G V +SV + + S+ G + Sbjct: 374 SAVITCDADMITQCVINLMSNAMRYTPEDGWVVVSVHGDRKHVMVSVSDTGIGIAKDDL- 432 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + E + + L + Sbjct: 433 ARIFGRFWRADASRAREAGGLGVGLAVTKTIVERHHGFIAVESELEKGTTFTLHLPR 489 >gi|328952923|ref|YP_004370257.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453247|gb|AEB09076.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 491 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 63/232 (27%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 + K + + +L L + I H + +P+ I S +++ E Sbjct: 246 LEKRQNQLVQIKKMSSLGVLTAGIAHQLNNPLNNISTSCQIVLEELDICNHEFMHKMLTN 305 Query: 50 -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTG 106 +Q + + L+F R+ + +++ + QV Sbjct: 306 VIQEVHRARDIVKGLLEFSRVRDFSLNPTVLRDVIARAVRLVASQAPPGVEIIQQVPDDL 365 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEK 163 + ++ +NL + A ++ + + + +++ G Sbjct: 366 ILDLDVQRMQEVFINLLLNATQAIEELPGQIKIAAWADEARQQAMITVEDTGVGIPPEAL 425 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +++ + E + L Sbjct: 426 DKIFDPFFTTKEVGLGTGLGLSIAYGIVEKHRGTITVESKPGEGTRFTISLP 477 >gi|196035779|ref|ZP_03103182.1| sensor histidine kinase [Bacillus cereus W] gi|195991746|gb|EDX55711.1| sensor histidine kinase [Bacillus cereus W] Length = 461 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ +Q + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLQYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454 >gi|16078513|ref|NP_389332.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221309319|ref|ZP_03591166.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221313645|ref|ZP_03595450.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318568|ref|ZP_03599862.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322841|ref|ZP_03604135.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315207|ref|YP_004207494.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|729901|sp|P39764|KINC_BACSU RecName: Full=Sporulation kinase C gi|514330|gb|AAA66183.1| sensor kinase [Bacillus subtilis] gi|520577|dbj|BAA07045.1| histidine protein kinase kinC [Bacillus subtilis] gi|520842|dbj|BAA07049.1| kinC [Bacillus subtilis] gi|2633820|emb|CAB13322.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|3282134|gb|AAC24924.1| histidine protein kinase [Bacillus subtilis] gi|320021481|gb|ADV96467.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 428 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 72/225 (32%), Gaps = 17/225 (7%) Query: 4 NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 N S L + L + I H++ +P+ ++ L+++ + + + Sbjct: 202 NERLARESQKLSITSELAAGIAHEVRNPLTSVSGFLQIMKTQYPDRK--DYFDIIFSEIK 259 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKI 109 + + ++++ ++K + + Sbjct: 260 RIDLVLSELLLLAKPQAITFKTHQLNEILKQVTTLLDTNAILSNIVIEKNFKETDGCMIN 319 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ ++P+GG VTIS + + + S+K GN EK QI Sbjct: 320 GDENQLKQVFINIIKNGIEAMPKGGVVTISTAKTASHAVISVKDEGNGM-PQEKLKQIGK 378 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+ L E V +L Sbjct: 379 PFYSTKEKGTGLGLPICLRILKEHDGELKIESEAGKGSVFQVVLP 423 >gi|262404277|ref|ZP_06080832.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sp. RC586] gi|262349309|gb|EEY98447.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sp. RC586] Length = 597 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 68/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + ++ + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEDNLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103 I + + ++ + S + + + + + +V Sbjct: 418 ISALTERMAKISEQLKSFARKSTSSEQQDVQLYPLILSAKELMAAQFKAQMTKLELCEVE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFP 161 + ++L+NL A +L + + ++ + + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQTERVVQIKLQLSEQQIQLWVDDNGPGVGV- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHGMQGELSVTSSPLGGARFTISLPR 590 >gi|240139593|ref|YP_002964069.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens AM1] gi|240009566|gb|ACS40792.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens AM1] Length = 622 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 K++ L S + AL L I HD + + AI SLEL + + ++ Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R + VD + + + + V + Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGGHVSVVRDLEPDMPF 365 Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++ L + + + R + S+ G Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTG 425 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++ + + + V LA + RL + L + Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484 >gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1129 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ A+ EL E +++ + + ++ Sbjct: 479 AKEEAERANRAKSAFL--ANMSHEIRTPMNAVLGMTELALETTYDEDQREYLETIHEASC 536 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105 + + + + + + + + + Sbjct: 537 SLMDIINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELA 596 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161 I S +I++NL A G + + + ++ G Sbjct: 597 ESYIGDSVRIRQIMVNLLSNAVKFTDEGEILMSVKAMEKTAKMDSVEIRIEDTGIGLSEK 656 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + L +L + V S + Sbjct: 657 EI-ARIFSPFIQADVSTTKRYGGTGLGLSICKKLVEIMGGKLEVQSAPGKGSVFSFTIP 714 >gi|218887291|ref|YP_002436612.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758245|gb|ACL09144.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 480 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLI 53 M + L + + + I H+I +P+G I +S ELL + + +++ Sbjct: 247 MQEKQRLERELHQHEKLAGMGRVVASIAHEIRNPLGIIRSSAELLLKRPSSSDPVTARIL 306 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVS 103 + A + + Y + + V++ V + Sbjct: 307 QAIYDEAKRLSQTVNDFLDYARPRQPRQDPVEADGVLDRVLGFLEGELARREVAVARETE 366 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + N+ + A ++ G +T++ + + + + +G P Sbjct: 367 PGITISGDGDLLYRAFYNIMVNALQAMDGPGSITVTSRRDGDAVELAFRDSGPG-FDPAN 425 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++D + D + V + + L + + V+ L Sbjct: 426 RERLLDPFFTTKDDGTGLGLPIVNSIITSHGGSLRIDNAPEGGAVVYVRLP 476 >gi|94265276|ref|ZP_01289035.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93454257|gb|EAT04573.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 412 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------Q 51 K + + + +VA+ + + + H+I +P+G I L+L + V+ + Sbjct: 156 EKELAEKIRHTEKMVAMGQMTAGLAHEINNPLGVILCYLDLAKRQATDPLVLGDLEIIEK 215 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107 R L F R + + + ++ ++ A V Sbjct: 216 QTRGCKKIVGDLLAFARGGESHKKLQELAPIIKEVVDMVAPQFAKQGVVIDLSLAGELPP 275 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKF 164 + + + ++ LNL M A ++P G ++ ++ NG E Sbjct: 276 LLLDNNKLKQVFLNLLMNACQAMPPKGGWIEIRAVLESPAGRVRVWVRDNGEGIAAAEV- 334 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E+ + E L Sbjct: 335 ERIFEPFFSTKATGEGTGLGLAVSYGIIKEHGGDIEVESRLGEGSCFIIDLP 386 >gi|94969581|ref|YP_591629.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551631|gb|ABF41555.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 551 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 28/240 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVM 50 K + + + + A+ L + HD + +G I ELL E DE++ Sbjct: 170 RKRLEESFYQAQKMEAVGRLAGGVAHDFNNMLGVISAYAELLREEPSLSLRASKRVDEIL 229 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++ L F R ++D + ++ +++ + D R+ V T + Sbjct: 230 SATQRANALTRQLLAFSRKQVISPTTLDLNAVVYGVKDMLQRLVGEDVRISVMATPKLPP 289 Query: 111 LSRER---AKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGN 156 + +R ++LLN + ++P+ + + + + G+ Sbjct: 290 IKADRGQLEQVLLNFAANSRDAMPKGGRFTLRTSLEPAPADLPRPLTGDCVCLEVSDTGD 349 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE I + + + V + + + E L Sbjct: 350 GM-SPEVMKHIFEPFYTTKSSGKGTGLGLATVYGVVEQAHGTIRVESAPGKGTTFRVYLP 408 >gi|167461347|ref|ZP_02326436.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 464 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 21/222 (9%), Positives = 68/222 (30%), Gaps = 19/222 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIRLK 65 + L L + + I H+I +P+ +I ++LL + + A + Sbjct: 230 NDKLAMLGKIAAAIAHEIRNPLTSIRGFIQLLQPELSKLGKEDYGKIIIDEIDRANDIIY 289 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKILL 120 + T V I + + + + +++++ + + + ++ Sbjct: 290 EFLNSSKPTKPVKQKILISSLLKEVVMLFESEALLRGCQIKITEADSDLWVRVDTKQLKQ 349 Query: 121 NLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ + G + I + + + ++ NG ++ D Sbjct: 350 VFSNLVKNAVEILTASGEGQQGMIEIKAKKKEKQAFIQVRDNGPGMDEHTLS-RLFDPFF 408 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ E V + L Sbjct: 409 TTKEEGTGLGLSVSYNIIKNHGGTIVAESEKGRGTVFNIELP 450 >gi|149917886|ref|ZP_01906381.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis pacifica SIR-1] gi|149821406|gb|EDM80808.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis pacifica SIR-1] Length = 1891 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 24/234 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--- 60 ++ + L S + H+I +PI I + ELLDE + EV+ L Sbjct: 1651 TQLRQQQRLEAIGTLASGVAHEINNPIQGILSYAELLDEDRDKPEVVGEFALEIRRESER 1710 Query: 61 -----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKID 110 L F R + D + RV++ Sbjct: 1711 VATIVRDLLTFSRSEERQPFEAVRFASVLDSMMTLLRVTLEHDRVELRIVGLEQAPSLRC 1770 Query: 111 LSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ ++L+NL A +L + N ++ NG PE Sbjct: 1771 RPQQLRQVLINLITNARDALNSADTGEGAPKAIEVRVTSERPNWLTIRVEDNGPGI-PPE 1829 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + E+ +L + L Sbjct: 1830 VLPRIFDPFYTTKGRHEGTGLGLALSHGIVSEHGGQLSVDSPPGRGACFRIDLP 1883 >gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 936 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 A++ + + L + + H+I +P+ AI +LL +E+ E ++++R ++ Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 757 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + + G VD + DI + + + + Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 817 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924 >gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 926 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 A++ + + L + + H+I +P+ AI +LL +E+ E ++++R ++ Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 747 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + + G VD + DI + + + + Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 807 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 866 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914 >gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] Length = 957 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 A++ + + L + + H+I +P+ AI +LL +E+ E ++++R ++ Sbjct: 721 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 778 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + + G VD + DI + + + + Sbjct: 779 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 838 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 839 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 897 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 898 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 945 >gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 936 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 A++ + + L + + H+I +P+ AI +LL +E+ E ++++R ++ Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 757 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + + G VD + DI + + + + Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 817 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924 >gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] Length = 926 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 A++ + + L + + H+I +P+ AI +LL +E+ E ++++R ++ Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 747 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + + G VD + DI + + + + Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 807 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 866 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914 >gi|194014833|ref|ZP_03053450.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061] gi|194013859|gb|EDW23424.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061] Length = 731 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49 K + + D +V L + I H+I +P+ A+ ++LL + Sbjct: 496 RKELEERVRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGNIEGEYSLYFNVITSE 555 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-K 108 ++ I +I K + F V + D+ + V + V Sbjct: 556 LKRIESIITEFLILAKPQAIVFEEKNVVQIVKDTMDLLHAQANLGNVQMHLNVIDEIPLI 615 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A +PR G V +S+Q + SL+ G +K ++ Sbjct: 616 YCEQNQLKQVFINILKNAIEVMPRKGNVYVSIQRKGEEHIVISLRDEGCGM-AEDKLRRL 674 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + E + V L Sbjct: 675 GEPFYTTKERGTGLGLMVSYKIIEEHQGTIEVESEEGVGTVFHLTLP 721 >gi|222152721|ref|YP_002561898.1| sensor histidine kinase [Streptococcus uberis 0140J] gi|222113534|emb|CAR41324.1| sensor histidine kinase [Streptococcus uberis 0140J] Length = 452 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 69/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115 + T + I + + + + L + Sbjct: 271 IDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVSGKSYEIIRDYPITSVWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+ + ++ + ++ I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKIRVKMKTTDSQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIVKQHNGFIWAKSDYGKGSTFTIVLP 434 >gi|86157703|ref|YP_464488.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774214|gb|ABC81051.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 630 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 67/232 (28%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51 ++ + L ++ + + + H++ +P+ I L + + + Sbjct: 396 ERSERQLRETEKLASIGEMAAGLAHELNTPLSNIRALASLAKRDLEAGPADPRALSQDLA 455 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSW 104 + + ++ + + + + Q + + V Q Sbjct: 456 DVTEQTRRCSAIIQGLLRFARRQPPALAAHDVDALVQGALELVRLRAEGKGVALAFQPGP 515 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + ++ +NL + A + GG+V IS + + +G PE Sbjct: 516 ARPTVVDAAQLEQVFVNLLLNAIDASGPGGRVEISTAAADGRVSVRVTDHGPGI-APEHL 574 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + L + + L Sbjct: 575 PRIFDPFFTTKEVGQGTGLGLSVSYGIVRSHGGALRVDSAPGRGATFTVELP 626 >gi|298291177|ref|YP_003693116.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927688|gb|ADH88497.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 884 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 65/228 (28%), Gaps = 18/228 (7%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 + L A+ L + + H++ +P+G + +S+ +L + + + I+ + Sbjct: 648 TRAELTRTERLAAIGQLTATVSHELRNPLGTLMSSVAVLKRTGKFDSHDVHDEIDRIQRN 707 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + ++ + + L + V + + Sbjct: 708 VRRCVRIIEDLLEFSRRPNVSMVPLALDAWIIEHLTDLKSLSPVHLELHLGCDRMIEADG 767 Query: 114 -ERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPEKFTQ 166 ++L+N+ A ++ + + ++ NG E + Sbjct: 768 ERLRQVLVNVVQNAMQAVQECPSAARPGKVTIATACEDDRVCITVSDNGIGM-SEEVQAR 826 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + + ++ + L Sbjct: 827 LFEPLFSTKPFGLGLGLALVRRIVERHGGSVRITSVEQEGTCVEIRLP 874 >gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 921 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 15/228 (6%), Positives = 59/228 (25%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI L+ E +++ ++ Sbjct: 524 LQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESENKEERKTFYEIVEANN 583 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + ++ ++ ++ + + Sbjct: 584 ERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQGVQLIYEPSENGL 643 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167 + ++ ++ + + +IS N+ +F + G + Sbjct: 644 VIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVF 703 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 704 ERFAKLNNYAQGTGLGLSICKTIVERLGGEISVSSVVGQGTTFTFTLP 751 >gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 939 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 15/228 (6%), Positives = 59/228 (25%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI L+ E +++ ++ Sbjct: 524 LQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESENKEERKTFYEIVEANN 583 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + ++ ++ ++ + + Sbjct: 584 ERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQGVQLIYEPSENGL 643 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167 + ++ ++ + + +IS N+ +F + G + Sbjct: 644 VIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVF 703 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 704 ERFAKLNNYAQGTGLGLSICKTIVERLGGEISVSSVVGQGTTFTFTLP 751 >gi|229101139|ref|ZP_04231905.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28] gi|228682267|gb|EEL36378.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28] Length = 672 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC 43184] gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC 43184] Length = 798 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 62/230 (26%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + L + L + + H+I +P+ AI LL D+ + + +++I+ ++ Sbjct: 573 QREKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSTLLVDTDDPEEKKQFVEIIQKNNE 630 Query: 59 SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + L ++ V + Sbjct: 631 LLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMRIKVPAEVALCVVPDLPSYI 690 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +I+ N A +G + FS+ G+ PE + Sbjct: 691 MRCDKVRLTQIISNFINNAIKHTSKGTILLGYEIRWDE-IEFSVTDTGDGM-SPEVQRHV 748 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + + ++ E L + Sbjct: 749 FDRFYKGNSFKQGTGLGLSICKSIIEQVGGKIGVESEIGKGSRFWFTLPR 798 >gi|94263541|ref|ZP_01287352.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93456074|gb|EAT06221.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 579 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 16/227 (7%) Query: 2 AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQL 52 K + L A L + + H+I +P+G I L+ ++ Sbjct: 340 KKRHELYCRTEKLAATGQLAAGVAHEINTPLGNIIGYAGLIKPDADPGANAERVAIIIEQ 399 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSWTGEKI 109 R S L + R + VD + + ++ D + + + Sbjct: 400 ARKCSHIIRGLLDYARSSATTPSPVDLNALVRRVVEMLRLQLDKKEITLELHCAVLPVFA 459 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 R+ ++++NL + A ++ GG++ + ++ + ++ +G E ++I D Sbjct: 460 ADERKVEQVVMNLLLNAIQAVAPGGRIELQTWSTEKRVLLKIRDSGPGI-SEEMQSRIFD 518 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + + E D + + Sbjct: 519 PFFTTKPVGEGTGLGLAICAGIIAELQGSIDLES-DGEGTSFTVNIP 564 >gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1336 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 15/228 (6%), Positives = 59/228 (25%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI L+ E +++ ++ Sbjct: 921 LQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESENKEERKTFYEIVEANN 980 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + ++ ++ ++ + + Sbjct: 981 ERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQGVQLIYEPSENGL 1040 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167 + ++ ++ + + +IS N+ +F + G + Sbjct: 1041 VIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVF 1100 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 1101 ERFAKLNNYAQGTGLGLSICKTIVERLGGEISVSSVVGQGTTFTFTLP 1148 >gi|330684530|gb|EGG96241.1| putative alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus epidermidis VCU121] Length = 506 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ + + +I S Sbjct: 276 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEDSLNMFLNIILKESNRIE 335 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + D Q + + Sbjct: 336 SLVMDLLDLSHIEQQNEITTSYMNLSELAYTTIDNLQNQAQNKNITIESNIEQDVIFKAN 395 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + A+++ NL A KV +SV + ++ G E F + Sbjct: 396 ENKIAQVITNLLSNAINYSTNDNKVIVSVYREGKKVNLEIQDFGIGISAEEQKHIFERFY 455 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + Sbjct: 456 RVDKARSRDSGGTGLGLSITKHIVEAHNGRISVVSRLNEGSTFKVT 501 >gi|295400135|ref|ZP_06810115.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294977914|gb|EFG53512.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 376 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 63/233 (27%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M KN +L L SR+ H++ +P+ I +LL+ + Q + ++ Sbjct: 1 MRKNAQKKRIRQNL--ELISRMSHELRTPLNGILGFAQLLEMDESLNSQQQEFVQAILNG 58 Query: 61 IIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + ++ + IE + Sbjct: 59 ARHLLNLVNEMLDIARIETGEIQLAYDLIKLGSVIDESVKLIEPLAGKRNIKIVNQTQLD 118 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 S +ILLNL A G VT++ + +K +G E + Sbjct: 119 KYYVYTDSTRLRQILLNLLDNAVKYNRDNGTVTLTSRSEGGNICIHIKDSGIGIPKNE-Y 177 Query: 165 TQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + +D + V L + E L Sbjct: 178 ENIFAPFYRIKGTKVDGTGMGLSLVKQLIQLMGGTIGVESEMGEGSDFWFSLP 230 >gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 496 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKF------ 66 + + H++ +P+ I E L + + + + S + Sbjct: 270 FVANVSHELRTPLTIIQGYTEALLDGFAETEEERQQYLNNVLEESQRLQRLVNDVLDLRS 329 Query: 67 --MRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERA---KILL 120 Y VD L + + + F + +S + + ++ + Sbjct: 330 LESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLSAEEVWEAVYADPDRLEQVFV 389 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 NL A P GG+V IS ++ ++K +G + + + + Sbjct: 390 NLIDNALRHTPAGGEVKISSALETDKVFVTVKDSGPGISSKDLPLIWERFYKVDKARSRG 449 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V++ L Sbjct: 450 GEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLP 488 >gi|78355552|ref|YP_387001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217957|gb|ABB37306.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 498 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 N+ L S + A+ L + I H+I +P+ AI LL ++D + R+ Sbjct: 260 RTNMERKLHQSEKMAAIGELATYIAHEIRNPLFAIGGFANALLRSPSLDDNAREKARIIL 319 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VSWTG 106 + +R + D G D+ ++ D + + + Sbjct: 320 EESRRLDTILRSTMNFAKPSDPRRGDVDMNHIVRDTMWLMRLNDEKRSITTGVDLTEPLP 379 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + L+NL A ++PRGG +T+ + ++ G E Sbjct: 380 LARGDADMTKQCLINLVKNAQEAMPRGGSLTVRTGMKQRGIFIQVEDTGTGI-PEEIREN 438 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L E + + + ++ L+ Sbjct: 439 VFSPFFSTKDKGAGLGLAMTKKLIEEMGGAVELQTAEGKGTSVTLFLQ 486 >gi|37519592|ref|NP_922969.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35210583|dbj|BAC87964.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 508 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSR---IC---HDIISPIGAIHNSLELL-DEVGIEDEVMQLI 53 +A L ++ S+ I H++ +PI + LELL D+ G E M ++ Sbjct: 254 LAATFNQMLDRLEAA--FASQRNFISDAGHELRTPITIVRGHLELLGDDPGERAETMAIV 311 Query: 54 RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + R F + D ++ + ++ +G Sbjct: 312 YDELDRMNRFVDDLLLLARAERPDFLFFELFDVGELTDELYAKARALAPREWSIEARGSG 371 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + + + ++NL A G ++ I + G + Sbjct: 372 RMVADRQRLTQAVINLAQNAVQHTAPGDRIAIGSALRGVWVYLWVSDCGPGIAPEDQRRI 431 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + + V +A + + + + +L Sbjct: 432 FERFERGSHSR-YEGSGLGLAIVQAIATTHGGSIQLTSVPGAGATFTLVLP 481 >gi|152977664|ref|YP_001377181.1| multi-sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026416|gb|ABS24186.1| multi-sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 619 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68 + + H++ +P+ + + LE L + +D + + L+ + Sbjct: 392 FVANVSHELRTPLTTMRSYLEALSDGAWKDPNIAPQFLTVTQEETERMIRLVNALLQLSK 451 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDLSRERAKILLN 121 + + + + + D + K V + + + ++L N Sbjct: 452 MDSTEYRLMKEWVDFTEFFNNVIDRFEMSKEQNVIFNRSFSKKARFVDMDTDKITQVLYN 511 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GG +T ++D + S+ G E +I + Sbjct: 512 VISNALKYSPEGGTITYRLRDRGDMLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 570 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 571 MGGTGLGLAIAKEMIIAHGGSIWAKSEEGKGTTIYFTLP 609 >gi|150016010|ref|YP_001308264.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149902475|gb|ABR33308.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 568 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 16/218 (7%), Positives = 56/218 (25%), Gaps = 17/218 (7%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK----- 65 + + + + H++ +P+ +I E L + ++ + +I + + Sbjct: 349 MRSQFVANVSHELKTPLTSIKGFAETLKFVKDDETREKFLDIIDKEAERLSRLINDILVL 408 Query: 66 -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + + +I + + + + + + + ++ L Sbjct: 409 SNIESNLAVDMHEFEPGSVIEEVINIMRKTAINKNIKLEFKDNNSEKIFGDRDKFHQLAL 468 Query: 121 NLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 NL A + +K NG + F + + Sbjct: 469 NLIENAIKYSKDTSGKVEVLSYNEDKYYCLRVKDNGIGIPKEDISRIFERFYRVDKSRKK 528 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 529 GGTGLGLAIVKHIVKIFNGEIYVKSELGVGTCFEVKIP 566 >gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] Length = 894 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 61/228 (26%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI ++ E DE + + +++ Sbjct: 501 AKEKAEASDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDADERLNYYEIVAVNNE 558 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + V +I + + E I Sbjct: 559 RLLQLINEILDLSKIEAGIVEFTITPVRLHSLCKEIYDAHVFRCPQGVELIYESSDEGIV 618 Query: 111 LSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ ++ + + + ++ + +F + G+ +K +I Sbjct: 619 IDGDKNRLFQVVSNLIGNAFKFTTNGKISYGYHREGDYVVFHVNDTGSGI-AADKLDRIF 677 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + + +L Sbjct: 678 ERFVKVNTFAQGTGLGLSICKTIIERMGGNISVSSEIGKGTTFTFILP 725 >gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1352 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 69/243 (28%), Gaps = 32/243 (13%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56 L +D L + + H++ +P+ +I +LL + + + + + + Sbjct: 845 EANRALKELDRLKTEFLANVSHELRTPLNSILGYTQLLLDGVDGAINEDQQKSLLRVEKA 904 Query: 57 SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + + + L + L + + + + +V+ S Sbjct: 905 SNRLLQLINDVLDLSKLRAGRLELNAQKEDLHEILSEALQVVEPLARAKEISLKVEESEV 964 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---------VQDSKNENIFSLKINGN 156 I + ++LLNL A G +TI+ K+ + G Sbjct: 965 PPVIVDRDKIIQVLLNLLSNAVKFTDSHGLITINLNTVSLPESHGLIKDYAAVRISDTGI 1024 Query: 157 LARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + + L + R+ E + Sbjct: 1025 GIKEDDLQNIFQEFVQIDSSATRRHGGTGLGLPISRHLVEMHGGRIWVESEYGKGSTFTF 1084 Query: 212 LLE 214 +L Sbjct: 1085 ILP 1087 >gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 995 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 62/244 (25%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47 K L + L A L + + H++ +P+ +I +++ D + Sbjct: 744 RKQAEEKLINAKLEAEAANQAKSELLANVSHELRTPLTSIIGFSDVILKRKVGDLNDNQT 803 Query: 48 EVMQLIRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + I S + + + + ++ Sbjct: 804 RYLDKIHKSGQHLLDLINDILDLAKIESGKLELHREKISIPALLNDLESKLYPFASKKGL 863 Query: 99 RVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + + +IL NL A +G Q + FS+ G Sbjct: 864 SLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKFTNKGSVTVTVRQKNDAY-QFSVIDTG 922 Query: 156 NLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 ++ + +D + V L + ++ E + + Sbjct: 923 IGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLALVKRLVEIHGGQIWVESEESKGTTFT 982 Query: 211 ALLE 214 + Sbjct: 983 FTIP 986 >gi|317128903|ref|YP_004095185.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473851|gb|ADU30454.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 524 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----------IEDEV 49 + K I L ++LV + + I H+I +P+ + L+L + E Sbjct: 294 LEKEIS-RLDRLNLVGEMAAGIAHEIRNPMTTVLGFLQLSKSEQHKTSPTNDYINLMIEE 352 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + K + L + Q + ++ +S Sbjct: 353 LNRANGIITEYLSLAKDKISHKKVQDLNTVVRALTPLLQAEALMENKNVKLNLSDCPHVY 412 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +E +++LN+ M ++ G +TI E + ++ G E + I Sbjct: 413 IDEKEIRQLILNIGMNGLEAMEETGVLTIKTYTENEEIVLEIEDEGAGI-KEEIISDIGT 471 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + +A + + E D K Sbjct: 472 PFFTTKENGTGLGLAICYSVAQRHSANIDIESNKD-GTTFLIRFPK 516 >gi|218901525|ref|YP_002449359.1| sensor histidine kinase [Bacillus cereus AH820] gi|218537648|gb|ACK90046.1| sensor histidine kinase [Bacillus cereus AH820] Length = 672 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVHTNDVPALLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661 >gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1021 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 64/229 (27%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++I + + S + H++ +P+ +I ELL + + I + Sbjct: 600 RDITIEAEVDRMKSEFVSTVSHELRTPLSSILGFSELLLIKKLSEEARTKYTKTIHKEAK 659 Query: 59 SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + +E + D +Q Sbjct: 660 RLTDLVNDFLDLQRMELGKQVYDKEDFIALDLLAEVVESFAASGVDHDITLQTVERFFIN 719 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L+NL A P+G K+T+ V + F +K G + + Sbjct: 720 ADKERVTQVLINLLSNAVKFSPKGTKITLGVTPDEEYAKFFIKDQGLGI-PKDVQDNLFS 778 Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I + + + ++ E H V Sbjct: 779 KFYRVDNSDRRKIGGTGLGLSICKEIVEAHGGKIWVESEHGHGSVFYFT 827 >gi|229171167|ref|ZP_04298761.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3] gi|228612345|gb|EEK69573.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3] Length = 670 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS N + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGRNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|257785146|ref|YP_003180363.1| histidine kinase [Atopobium parvulum DSM 20469] gi|257473653|gb|ACV51772.1| histidine kinase [Atopobium parvulum DSM 20469] Length = 501 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA ++ ++ L L S + H++ +P+ AI ++E + + ++E ++ I S Sbjct: 256 MASSLERDI---KLERRLTSDVAHELRTPLMAIMATVEAIQDGILPADEERLENIVSESR 312 Query: 59 SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------QVSW 104 + M SV+ + + I + E + R Sbjct: 313 RLSRLVDAMLHLSRLENGKTKFNPESVNVVAMVASIVAMQETLFKENNRTLTFVDKTPEG 372 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 S + L NL A GG V I+V + + S+ +G + Sbjct: 373 NCFVDIDSDMIREALTNLLSNAIRYTDDGGHVVITVSIDNTDAVISVTDDGMGIAPEDIP 432 Query: 165 T---QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E S L Sbjct: 433 QTFSRFWRAEESRERASGGLGVGLAITKEIMDRHNGTISVESELGKGTTFSLYLP 487 >gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] Length = 587 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 25/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAATDEEKKELAKVIYD 410 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSW 104 L R+ G+ + L + I V+++ Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVHLLVEMND 470 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L NL A GG+V + V + S++ +G+ + Sbjct: 471 ELIVSFDPDRVEQVLTNLIDNALRHTDEGGEVRVIVDADEEVVRISVQDSGSGIPEEDLP 530 Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K + + L Sbjct: 531 FVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFTFTLP 585 >gi|332143340|ref|YP_004429078.1| osmolarity sensor protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553362|gb|AEB00081.1| osmolarity sensor protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 444 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 20/204 (9%), Positives = 57/204 (27%), Gaps = 6/204 (2%) Query: 17 LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 ++ + I HD+ +P+ I + E+L + + V + ++++ Sbjct: 232 IMTAGISHDLRTPLTRIRLASEMLPEDQDWIKDGIVNDIEDMNAIIDQFIDYARYDTEEV 291 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 T D + ++ Q ++++ +++ NL A Sbjct: 292 TQETDLNTIIAELVQARHLDDKHHIELKLNTIPPLPLRRIAMKRVIDNLIENAFKYGSDE 351 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190 ++ + ++ G E F G+ + + + Sbjct: 352 IAISSFYNRHEKRVYCKVRDFGPGIPHEELAGVFMPFAQGDKARNSSGSGLGLAIIRRII 411 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + + +V L Sbjct: 412 EAHDGEVTLRNHPQQGLVAEFYLP 435 >gi|312862820|ref|ZP_07723060.1| PAS domain S-box protein [Streptococcus vestibularis F0396] gi|311101680|gb|EFQ59883.1| PAS domain S-box protein [Streptococcus vestibularis F0396] Length = 446 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + +E+ + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALHEEIAPNFIKVSLDETNRMMRMISDLLALSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115 + T + I + + ++ I + + Sbjct: 270 IDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRDYSVNSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+S++ + ++ I S+ G + F + + Sbjct: 330 TQVVDNILNNAIKYSPDGGKITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433 >gi|300088232|ref|YP_003758754.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527965|gb|ADJ26433.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1149 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 + + S L A+ + + I H+I +P+ + ELL D E + +I Sbjct: 780 LREKAEM---SSRLAAVGEMAAGIAHEINNPLTGVIGFSELLMTRPDVPDDMKEDLHIIN 836 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S ++ M + V + V+E R Sbjct: 837 EGSQRVKDIVRRMLTFARQSKPVKSAVNIIDVLENTIEMRRYVLETSNISIVRDYARDIT 896 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163 E + + + ++ LN+ + A ++ + + + S + +G E Sbjct: 897 EVVADAGQLQQVFLNIIVNAEYAMKKAHDKGVLVVKTEKSDGHIRVLITDDGPGM-SDEV 955 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + + + + + E+ + + + L Sbjct: 956 KSKLFQPFFTTKDPGEGTGLGLALSMGIIKEHGGSISVKTVVGKGTTFIVELP 1008 >gi|153006997|ref|YP_001381322.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030570|gb|ABS28338.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 311 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 L +++ HD+ +P+ +I +E L + + E +++I + + Sbjct: 69 AKLQTEFVNKVSHDLRTPLTSIRMFVETLQLGRIPDPARQREALEIISEETARLSGLINR 128 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----------- 115 + + + I D + ++D Sbjct: 129 LLDWARMESGRRTYQLVRQPLAPIVDAALEAFEAMLLQHAAEVDCHIAPALPLVMADREA 188 Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ +L+L AH ++ + V+ S S+ NG E Sbjct: 189 LSEAILDLLQNAHKYTGPEKRIAVRVEASGPTVQISVTDNGPGIPEREHKRIFKKFYRAR 248 Query: 175 T-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I+ + V +A+ + ++ H + L Sbjct: 249 DPLSRTIEGTGLGLAMVKHIANGHGGKVSVASKVGHGATFTISLP 293 >gi|219849498|ref|YP_002463931.1| response regulator receiver sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543757|gb|ACL25495.1| response regulator receiver sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 392 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 23/232 (9%) Query: 6 CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61 L +D + + + H++ +P+ ++ LEL D + + + IR+ S Sbjct: 160 NAQLQDLDRMKDQFLATLSHELRTPLTSLLGYLELFDRGMLGPLNPQQEEAIRVMRRSGE 219 Query: 62 IRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 I + + +F +D L L + + V +S Sbjct: 220 ILARQLNNLLYFQEVRSRSFSFVQLQPLDILRPLIAAARERAAQAQLQFDVVLSEIKPIE 279 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++ NL A P GG+V + V+D I ++ G E +I Sbjct: 280 IDRSAFEQMVRNLLDNAFQYTPPGGRVRLIVRDEPTRLIIRVEDTGIGIAPAE-HEKIFL 338 Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + ++ + L + Sbjct: 339 PFYQVDHSLARGYAGSGLGLAIVRHIVDAHGGQIALRSALGEGSAFTVALPR 390 >gi|302338223|ref|YP_003803429.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635408|gb|ADK80835.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 387 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 70/221 (31%), Gaps = 20/221 (9%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRL 64 +L +L L + + H+I +P+G+I ++L+ D + + Sbjct: 154 NLASLTTLAAGVAHEIKNPLGSIGIHIQLMQRSLDRDGCLDREHGLEYLDIMEEEVERLN 213 Query: 65 KFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSR 113 + + D + D+ Q + + V + + Sbjct: 214 GIVVDFLFAVRPMNTELKQADVNAVIHDLLQFTKYELQEGGVQVVEEYDDGVPKVELDEK 273 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LLN+ A A++P GG +T++ ++ ++ G + +I + Sbjct: 274 YLKQALLNIIKNAQAAMPDGGSLTVTTGFKDDQVTIAIADTGIGI-GEDMVGKIFEPYFT 332 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E+ + V + L Sbjct: 333 TKEFGSGLGLTVVYKIIKEHGGDISLRSKKGEGTVFTISLP 373 >gi|160933151|ref|ZP_02080540.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753] gi|156868225|gb|EDO61597.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753] Length = 898 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 + I L + L I HD+ +P+ +I + +L E E++ +L R Sbjct: 656 KQAIELETQQERLRSNLLRAISHDLRTPLTSISGNAGVLMEKSIVLDEEKKQELYRSIYD 715 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + + + D A D + V + Sbjct: 716 DSMWLVNLTENLLSITRIENGTMHLQMGAELMDDVFQEALAHVDRQAKDHHISVELPDDL 775 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++N+ A P G + + + + S+ +G E Sbjct: 776 LLAKMDVRLIVQVIINIVNNAIKYTPAGSHIILRAEKQGAKVAVSISDDGPGI-SDEAKI 834 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D ++ + + + + H + + L Sbjct: 835 HLFDMFYTASQGKPDNRRGLGLGLNLCRSIVTAHGGEITVTDNIPHGSIFTFTLP 889 >gi|115375617|ref|ZP_01462874.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310823166|ref|YP_003955524.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367393|gb|EAU66371.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309396238|gb|ADO73697.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 549 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + ++S + A + R+ H+I +P+ I SLE L + + Sbjct: 317 LRSTTERLMASERIAAWQEVARRLAHEIKNPLTPIQMSLETLLAAQSAQDARFPALFRES 376 Query: 53 IRLSSMSAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + VD + + + T Sbjct: 377 AGVVLEEVDRLRRIVDEFSRFARLPKPQLTPVDLSELTQSVLALYATPPPGITLLPTIQT 436 Query: 106 GEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEK 163 G R++ ++L+NL A +L G ++ + I ++ G E Sbjct: 437 GVVARADRDQLTQVLVNLVKNAEEALADKGGSVRVRVKGTQTDAIVEVEDTGPGIPL-EH 495 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++I + + + + E+ +L S +L + Sbjct: 496 RSRIFEPYFTTKQGGTGLGLAIAARILQEHGGKLEVGGEPGEGARFSLILPR 547 >gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] Length = 755 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 73/235 (31%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I + + + H++ +P+ +I +L L+ D E++ + R + Sbjct: 257 RDITKETELDRMKTEFIATVSHELRTPMTSIKGALGLVLGGAAGDLPPEARELLTIARNN 316 Query: 57 SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG- 106 + I + + ++ + + +E++ + + Sbjct: 317 TDRLIRLINDILDISRIEAGKMEIRRAPLSPADVVRRAVEEMNAFARQRNITLTTDVPEG 376 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++L NL A P+G +V I +++ + F + G + Sbjct: 377 LARVMADADRLHQVLDNLISNAIKFSPQGSEVLIRARETGDGVRFDVIDRGPGIPADQTG 436 Query: 163 -KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + E+ ++ E S + Sbjct: 437 LIFERFYRVDNAASRKTGGTGLGLTICKAIVEEHGGQIWVESALGEGSTFSFTIP 491 >gi|229101411|ref|ZP_04232154.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28] gi|228681987|gb|EEL36121.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28] Length = 428 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 67/219 (30%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L + ++ ++ + + + ++ F Sbjct: 201 SEFLASVSHELRTPLTYVRGYADIALKDSTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS+T + ++++ Sbjct: 261 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERHIKVSFTCPPTLLVNLDEQRFEQVIV 320 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ +G + + Sbjct: 321 NILNNAYRHSKEHSHINISVTEEYKHISITIEDDGEGIPPEDLPHIFDRFYRVDKARTRS 380 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVISEVDHGSCFTISLP 419 >gi|229155572|ref|ZP_04283680.1| hypothetical protein bcere0010_17650 [Bacillus cereus ATCC 4342] gi|228627890|gb|EEK84609.1| hypothetical protein bcere0010_17650 [Bacillus cereus ATCC 4342] Length = 299 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 72/234 (30%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 65 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 121 Query: 57 SMSAIIRLKFMRL----AFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKI 109 + + + L + + + + +K +++ EK+ Sbjct: 122 TTRLSKLSQNLLKLTLLESEEYTPEKVNYRLDQQLKQIVLNSEPLWDEKEIELDLDLEKV 181 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI + + + ++ +G + Sbjct: 182 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYETLVEVRIRDSGIGISEEQKQHI 241 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + K Sbjct: 242 FERFYKVDSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIPK 295 >gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 977 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H++ +P+ AI E++ E + ++ + Sbjct: 467 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 524 Query: 62 IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 K + Y S + ++ +I+ I ++ + Sbjct: 525 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 584 Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + LLNL A G + + V ++ +F + +G PE Sbjct: 585 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTIQLQVAAQGDQVVFKVVDSGIGM-SPE 642 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + ++ E + + L + Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701 >gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 808 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVNLVYESSDESLMI 553 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 611 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659 >gi|237667737|ref|ZP_04527721.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656085|gb|EEP53641.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 562 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 19/218 (8%), Positives = 60/218 (27%), Gaps = 17/218 (7%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 + + + + H++ +P+ +I E L + ++ + +I + + + + Sbjct: 343 MRSQFVANVSHELKTPLTSIKGFAETLRIVDDSATREKFLDIIDKEAERLTRLINDILVL 402 Query: 71 FGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILL 120 ++ + + V + + V+ + + +++L Sbjct: 403 SNIESNLVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFEDNSSECILGDRDKFYQLVL 462 Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 NL A V IS + ++ NG + F + + Sbjct: 463 NLIENAVKYSKEKEGYVKISSHNDGGYYHLKIEDNGIGIPDEDISRIFERFYRVDKSRKK 522 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 523 GGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 560 >gi|182418974|ref|ZP_02950230.1| sensory box histidine kinase [Clostridium butyricum 5521] gi|182377257|gb|EDT74825.1| sensory box histidine kinase [Clostridium butyricum 5521] Length = 572 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 19/218 (8%), Positives = 60/218 (27%), Gaps = 17/218 (7%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 + + + + H++ +P+ +I E L + ++ + +I + + + + Sbjct: 353 MRSQFVANVSHELKTPLTSIKGFAETLRIVDDSATREKFLDIIDKEAERLTRLINDILVL 412 Query: 71 FGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILL 120 ++ + + V + + V+ + + +++L Sbjct: 413 SNIESNLVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFEDNSSECILGDRDKFYQLVL 472 Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 NL A V IS + ++ NG + F + + Sbjct: 473 NLIENAVKYSKEKEGYVKISSHNDGGYYHLKIEDNGIGIPDEDISRIFERFYRVDKSRKK 532 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 533 GGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 570 >gi|218901846|ref|YP_002449680.1| sensor histidine kinase [Bacillus cereus AH820] gi|218537537|gb|ACK89935.1| sensor histidine kinase [Bacillus cereus AH820] Length = 461 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454 >gi|307725685|ref|YP_003908898.1| histidine kinase [Burkholderia sp. CCGE1003] gi|307586210|gb|ADN59607.1| histidine kinase [Burkholderia sp. CCGE1003] Length = 585 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 73/264 (27%), Gaps = 50/264 (18%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISP------------------IGAIHNS---- 36 +A+ L S L ++ L + + H+I +P + A+ Sbjct: 312 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYVADLLTALAAYERTE 371 Query: 37 LELLDEVGIEDEVMQLIRLSS-----------------MSAIIRLKFMRLAFGYTGSVDS 79 EL+ E ++ ++ ++ + Sbjct: 372 AELIAESRATLAALKREIDIDYLRTDIPALLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 431 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEK------IDLSRERAKILLNLFMVAHASLPRG 133 L D + + + + E + + +++ +NL M A S+ Sbjct: 432 WANLESNLDTTIDVVWNELKYKAELEREFGAIPELECIPSQLSQVFMNLLMNAAQSIEGH 491 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191 G++T+ ++ ++ G PE +I D + + + Sbjct: 492 GRITVRTGHDESTVWVEIEDTGQGI-KPEHRDRIFDPFFTTRPVGTGAGLGLSISYGIVR 550 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + R+ +L K Sbjct: 551 KQGGRIEVRSQVGQGSTFRVILPK 574 >gi|291287528|ref|YP_003504344.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884688|gb|ADD68388.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 472 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50 +A++ + + L + + H++ +P+ +I + E+L + + ++ Sbjct: 231 LAEDFSVMVHRLKENDELRSEFIGNVSHELRTPLTSIREASEMLKEEYFRGDKETSNNLL 290 Query: 51 QLIRLSSMSAI------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +I S I K + + + E Sbjct: 291 NIISSESDRMINSVNNILEITRLDMAKEYYDFEQTDIGKIAHSAIEKTAPIAERRNITVT 350 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + + A + +NL A + VTIS +K G Sbjct: 351 SLISKGEVQALVDVEKIAVVFVNLLGNALKYSDQNTHVTISADRCGEFLCVCVKDEGIGI 410 Query: 159 RFPEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E + + + + + E L Sbjct: 411 SQDELSKIFERYRLGSNRSTEYKGTGLGLAICKKIIERHGGEIWAESSKGEGTRFYFTL 469 >gi|322420177|ref|YP_004199400.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M18] gi|320126564|gb|ADW14124.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M18] Length = 361 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 74/231 (32%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII----- 62 + L +L L + + H+I +P+G I + +LL+ ++E ++ + + Sbjct: 129 QADRLSSLGALAAGLAHEIKNPLGGIKGAAQLLEMEFPDNEDLREYVRVMLKEVQRVNLI 188 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRER--- 115 L G V+ L DI + ++ + +Q + + + Sbjct: 189 VEELLGLASPGRLKLGKVNLHRVLSDIVLLQKNACEGKELYLQQYFDPSIPPILADESLL 248 Query: 116 AKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEK 163 ++ LNL A ++ GG +T + + NG + Sbjct: 249 TQLFLNLIKNAMEAVGTGGVIKVTSRVLADYSMTQKGERRARMVAIDISDNGPGI-PADV 307 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A E++ + + V + +L Sbjct: 308 LENMFTPFFTTKSQGTGLGLAICQKIASEHRGMIRVDSDPSRGTVFTVMLP 358 >gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] Length = 928 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 55/229 (24%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI LL E +E ++ ++ + Sbjct: 701 AKEKAEEADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVETEDPEEKLEYAKMVEENNE 758 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ F L Q+ Sbjct: 759 LLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVKPGVELIFESTLPQCV 818 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++ N A G + + G PE +I Sbjct: 819 IVSDPNRLHQVVSNFINNAIKFTTTGSIRIGYDKPDDKHLRVYVTDTGIGI-APEACRKI 877 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + S + + + + + +L Sbjct: 878 FDRFIKLNSFVQGTGLGLSISKSIIEQLGGTIGVNSELGKGSTFWFILP 926 >gi|160877556|ref|YP_001556872.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS195] gi|304412004|ref|ZP_07393614.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS183] gi|307305899|ref|ZP_07585645.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica BA175] gi|160863078|gb|ABX51612.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS195] gi|304349554|gb|EFM13962.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS183] gi|306911392|gb|EFN41818.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica BA175] gi|315269754|gb|ADT96607.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS678] Length = 717 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGI- 635 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + L Sbjct: 636 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689 >gi|327438201|dbj|BAK14566.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 529 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 75/228 (32%), Gaps = 19/228 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 + S L A+ + + + H+I +P+ +I LE+ + + E ++I Sbjct: 301 ERQLMLSEKLSAIGKISAGLAHEIRNPLTSIIGLLEVFKVNLKTDNDKQKEYFRIIFSEL 360 Query: 58 MSAIIRLKFMRLAFGYTGSV---------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + + + + + + Q ++ + Sbjct: 361 ERIKNLVQQFVMMAKPDAKEVSKSRVSIHEIIEDILTLMENDFKNKNIKVHYQATFKNKI 420 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ LN+ + ++ G ++I + S E +++ +G+ + + Sbjct: 421 NVDKDKIKQVFLNVLQNSFEAIDFEGNISIAVNQNQSDGEVEITIRDDGSGM-DKDTLEK 479 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R+ + + + + L Sbjct: 480 LSTPFHSTKKSGLGLGLSMSYHIIELHRGRIKVKSEKEKGTIFTIWLP 527 >gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon] Length = 476 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%) Query: 3 KNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 K + + L + S + H++ +P+ A+ S ++L+ + E++ +I Sbjct: 236 KELALANERLKELDRLKSDFVSMVSHELKTPLTAMRTSAQVLEAAGIATETKREMLDIIL 295 Query: 55 LSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + R+ + + IE V ++ V Sbjct: 296 RNIDRQTNLVNDLLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKGIKLNVKLP 355 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +R ++++NL A PR G+++I + + + G + Sbjct: 356 EGLSSVKGDREKLTQVVINLLNNAIKFTPRSGEISIKAIELNGQVEVKVSDTGIGIPPED 415 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E L++ Sbjct: 416 LEKVFDKFYQVDSTLTREAGGTGLGLAICKGIIEAHNGHIWAESELGKGSTFVFTLDR 473 >gi|89893593|ref|YP_517080.1| hypothetical protein DSY0847 [Desulfitobacterium hafniense Y51] gi|89333041|dbj|BAE82636.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 462 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 71/232 (30%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA ++ L + I H++ +P+ +I + +E + + E + +I Sbjct: 231 MADSLK---KQEHLRKQFTADIAHELRTPLTSIRSYIEAFQDGVLPADKENLTIINEEIE 287 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + ++L F + + + + + + + Sbjct: 288 RLVGLSSDLKDLNVAEMGALKLNFTQVDITELIDKTVNKLIPLIQEKGIAFEWEKPASVF 347 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 ++ NL A+ G+++I ++ +++ S+ +G + F Sbjct: 348 IEGDEYHLTRLFYNLIHNAYKFTESNGRISIQMELRQSDVRISVCDSGIGIPKEDLPFIF 407 Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + ++ L E + +L Sbjct: 408 ERFYRAEKSRSRETGGTGIGLALVQQITQLHRGTLDVESNPGQGSKFTVVLP 459 >gi|126172339|ref|YP_001048488.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS155] gi|125995544|gb|ABN59619.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS155] Length = 717 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGI- 635 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + L Sbjct: 636 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689 >gi|328555716|gb|AEB26208.1| sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328914102|gb|AEB65698.1| Phosphate regulon sensor protein phoR [Bacillus amyloliquefaciens LL3] Length = 472 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 57/236 (24%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQ 51 M + I + + S H++ +P+ +IH +E+L E ++ Sbjct: 236 MLERIETSFQAEKEAKERIRQFVSDASHELRTPLTSIHGFIEILMRGAAEKPEQKEKALR 295 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103 + S+ A ++ + + L Q+ V Sbjct: 296 SMYAESVRANKLIEDLLFLAKIDRVPSFEMEKGALGAVILEMEAQLKLLARNRKLEFFVD 355 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + +++LNLF A V + + NG Sbjct: 356 QQIKAVFDKDKMKQVILNLFYNAVQHTDEETGVITVSLQKDGGIMLMIADNGTGIAPEHV 415 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V L Sbjct: 416 PHLFDRFYRAETSRSRKYGGTGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471 >gi|308175742|ref|YP_003922447.1| sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307608606|emb|CBI44977.1| sensor histidine kinase RBAM_037320 [Bacillus amyloliquefaciens DSM 7] Length = 472 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 57/236 (24%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQ 51 M + I + + S H++ +P+ +IH +E+L E ++ Sbjct: 236 MLERIETSFQAEKEAKERIRQFVSDASHELRTPLTSIHGFIEILMRGAAEKPEQKEKALR 295 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103 + S+ A ++ + + L Q+ V Sbjct: 296 SMYAESVRANKLIEDLLFLAKIDRVPSFEMEKGALGAVILEMEAQLKLLARNRKLEFFVD 355 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + +++LNLF A V + + NG Sbjct: 356 QQIKAVFDKDKMKQVILNLFYNAVQHTDEETGVITVSLQKDGGIMLMIADNGTGIAPEHV 415 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V L Sbjct: 416 PHLFDRFYRAETSRSRKYGGTGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471 >gi|227529844|ref|ZP_03959893.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus vaginalis ATCC 49540] gi|227350328|gb|EEJ40619.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus vaginalis ATCC 49540] Length = 622 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 67/225 (29%), Gaps = 28/225 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-AF 71 S + H++ +P+ ++ + +E L + I + +++++ + I + + + Sbjct: 381 FVSNVSHELRTPLTSVKSYVEALSDGAWQDKEIAPQFLKVVQDETERMIRMINDLLSLSR 440 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------------TGEKIDLSRE 114 G+ + +I ++ + + + + Sbjct: 441 MDAGTTKLNLEYVNINELFNYILNRFDMIIKKEEDPKKKKYTIERFFTKKDLWVEIDTDK 500 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 501 FTQVIDNIMNNAIKYSPDGGVITARLLETHNHVIMSISDQGLGIPRKDLSHIFDRFFRVD 560 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 561 KARSRKQGGTGLGLAISKEVVNMLGGQIWVDSVEGKGSTFYISLP 605 >gi|213612380|ref|ZP_03370206.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 297 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 72 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 131 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 + + + L DI V +D + + +++ + + + Sbjct: 132 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 191 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 192 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 250 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 251 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 290 >gi|218233945|ref|YP_002365446.1| sensor histidine kinase [Bacillus cereus B4264] gi|218161902|gb|ACK61894.1| sensor histidine kinase [Bacillus cereus B4264] Length = 463 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 892 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 70/243 (28%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47 K L L A + + H++ +P+ AI +++ + Sbjct: 325 RKKTEEELLQAKLAAESANRAKSEFLTNMSHELRTPLTAIIGFSDVMLGGISGEFSEQNK 384 Query: 48 EVMQLIRLSSMSAIIRLKF-MRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AV 96 + + I S + + + L+ G ++ + + +V D + Sbjct: 385 KFLNNIANSGKHLLTLINNILDLSKIEAGKMELEFEMFSVSEVFNDTRAVTSALALKKDI 444 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + V +I+ NL A P G V +S +++ S+ G Sbjct: 445 SMKYNVDSEILVYADRVRFKQIIYNLVSNAIKFTPDRGSVIVSALKTEDSVRISVSDTGI 504 Query: 157 LARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + +D ++ + + V + + R+ E Sbjct: 505 GISEENQKLLFQPFRQIDASINRHYEGTGLGLALVKKFVNLHGGRVWAESEPGKGSTFEF 564 Query: 212 LLE 214 L Sbjct: 565 ELP 567 >gi|323698405|ref|ZP_08110317.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458337|gb|EGB14202.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 884 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L S + A+ L I HD + + +I NS EL LD + ++ + ++ Sbjct: 502 EKQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSTELAVSDLDPESMTTRDLERVLKAAR 561 Query: 59 SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + D + + ++++ + V + + Sbjct: 562 RGGRVVKQILAFSRPSTEGFRPTDVGGVITEAVELLKSSMPRKIEVLSRIKENLSCVYAD 621 Query: 115 R---AKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKINGN 156 ++++NL A +L R G D ++ NG Sbjct: 622 PTQIHQVVMNLCTNAFHALRRTGGTIEVRLDQAEVAGEEADILGLTPGEYVRLVVEDNGP 681 Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + V + H +K L + + V S L Sbjct: 682 GI-PQDIVDKIFDPFFTTKDKTEGTGLGLAVVHGIVHSHKGGLRVDPREGGGTVFSIFLP 740 Query: 215 K 215 K Sbjct: 741 K 741 >gi|83815334|ref|YP_445007.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] gi|83756728|gb|ABC44841.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] Length = 668 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 57/231 (24%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSS 57 M + + L + L + H++ +PI I E++ E E +Q+ Sbjct: 420 MLRAKQEAEQAARLKSTLIHNMSHELRTPITTITGYAEVIMEEAEEPHRSFALQIRESGR 479 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + +A +G+++ + + DK + + + Sbjct: 480 RLSDTLQSVLDMAQIESGTLEVTVQEVSVPGVVRDVVDRHAQAIEDKALTAELDVPEDCV 539 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKFTQIV 168 +L + + + + + ++ G + Sbjct: 540 VATDRALLYRILNNLVQNAVKFTEKGRCQVWVEPVAFGVRIHVRDTGVGIDPAFRPHLFE 599 Query: 169 DG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + L + + + L Sbjct: 600 PFKQESEGVAREYEGTGLGLALTKRLVDLLGGAIEVDSAKGEGSAFTVELP 650 >gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 977 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H++ +P+ AI E++ E + ++ + Sbjct: 467 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 524 Query: 62 IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 K + Y S + ++ +I+ I ++ + Sbjct: 525 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 584 Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + LLNL A G + + V ++ +F + +G PE Sbjct: 585 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTIQLQVAAQGDQVVFKVVDSGIGM-SPE 642 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + ++ E + + L + Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701 >gi|229175384|ref|ZP_04302899.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3] gi|228608216|gb|EEK65523.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3] Length = 484 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHP 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARF-- 160 + +++ NL + + + K N+ I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKINVTVSIDDNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWVESELGKGTSIFFSLEK 478 >gi|30260804|ref|NP_843181.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47525929|ref|YP_017278.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183642|ref|YP_026894.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|65318076|ref|ZP_00391035.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165872713|ref|ZP_02217342.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167635201|ref|ZP_02393517.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167640886|ref|ZP_02399144.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170689022|ref|ZP_02880222.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170708472|ref|ZP_02898914.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|177652843|ref|ZP_02935216.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190568579|ref|ZP_03021485.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227816480|ref|YP_002816489.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229602121|ref|YP_002865248.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254684273|ref|ZP_05148133.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254722077|ref|ZP_05183866.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254738738|ref|ZP_05196441.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254742050|ref|ZP_05199737.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254754963|ref|ZP_05206997.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254762306|ref|ZP_05214150.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|30254253|gb|AAP24667.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47501077|gb|AAT29753.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177569|gb|AAT52945.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|164711574|gb|EDR17122.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167511106|gb|EDR86494.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167529460|gb|EDR92211.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170126593|gb|EDS95478.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170667007|gb|EDT17770.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172081877|gb|EDT66946.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190560373|gb|EDV14352.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227007430|gb|ACP17173.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229266529|gb|ACQ48166.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 463 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454 >gi|156742976|ref|YP_001433105.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234304|gb|ABU59087.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 509 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 18/213 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRL-------- 69 + + H++ +P+ A+ +LE+L D + + + ++ + Sbjct: 265 ADVSHELRTPLTAMQGNLEVLARGAARDPQLLNESLDDMRREVARLIRMVNDLLLLARSD 324 Query: 70 --AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 V+ L ++ V R+ I + LLNL + A Sbjct: 325 AGIQIRRDPVELDTLLLETHRELRPLAGQVQLRIGEEDQAVVIGDRDRIKQALLNLGINA 384 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDI 181 P GG VT+S+ S+ G + F + + + Sbjct: 385 IQHTPPGGVVTLSLTIRDGHAALSVADTGYGIAPQDLPHIFERFYRADQSRCHNGGGAGL 444 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + ++L V + LL Sbjct: 445 GLSIVRSVVEAHGGKVLVSSEPGKGSVFTMLLP 477 >gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 933 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 65/242 (26%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56 K+I L S + H++ +P+ +I +L+LL ++ + + Sbjct: 418 KDISDRREVERLKDEFVSVVSHELRTPLTSISGALDLLASKVVPAGSEDAQRMLNIAANN 477 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106 + + + + +G + + ++ + V + + + Sbjct: 478 TDRLVRLINDILDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLAMSPLSA 537 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---------VQDSKNENIFSLKINGNL 157 ++ NL A P G V ++ + +F +K G Sbjct: 538 HLWADPDRIIQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGRG 597 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + + R+ E Sbjct: 598 IPADKLESIFERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGSTFFFT 657 Query: 213 LE 214 L Sbjct: 658 LP 659 >gi|330836363|ref|YP_004411004.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta coccoides DSM 17374] gi|329748266|gb|AEC01622.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta coccoides DSM 17374] Length = 517 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 58/231 (25%), Gaps = 20/231 (8%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + +L M+ + S + H+I SP+ I+ LL + + +I +M Sbjct: 282 EMTLSLEQMENMRQEFISNVSHEIQSPLATINGFARLLYNDELSPEKRNHFLNIIETETM 341 Query: 59 SAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + +D + + + T Sbjct: 342 RLSRLSENLLKLAALETDSVKFEPKPYRIDKQLRALLLGYEPQWNEKNITMEASLDTVTL 401 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFT 165 +++ +NL + P GG + + + + I + G F Sbjct: 402 TADEDMMSQVWINLIHNSIKFTPDGGSIQVELHEHGKSVICKISDTGIGIAEDAQKHIFE 461 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L Sbjct: 462 RFYKADKSRERTKKGSGLGLAIAKTIIEMHGGTITVYSKLGAGTTFTVSLP 512 >gi|116255579|ref|YP_771412.1| putative two-component sensor histidine kinase potassium transport regulator protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260227|emb|CAK03331.1| putative two-component sensor histidine kinase potassium transport regulator protein [Rhizobium leguminosarum bv. viciae 3841] Length = 902 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 52/233 (22%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 S L + L + I HD+ +P+ AI + L + +++ + S Sbjct: 659 RARLAAESDRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + I + ++ + + Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNHALHYAGDIIGSALRRAAKILDGHKTEMSIPADLPM 778 Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P G + I + + + G + Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEGSVIHIEGWADADNVVVQVSDEGPGIPPADLTRVF 838 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLEK 215 D + + V + L K Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTITAGNRTGRRGAVFTIRLPK 891 >gi|330686045|gb|EGG97668.1| sensor protein SrrB [Staphylococcus epidermidis VCU121] Length = 498 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 61/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 282 ANVSHELRTPIALLQGYTESIVDGVVTEPDEIHESLAIVLDESKRLNRLVNELLNVARMD 341 Query: 74 ----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 D L + + + ++ + +V+ ++L NL Sbjct: 342 AEGLSVEKETQPISDLLNKMRIKYRQQATDLELNMQFEVNNQQLWNYDMDRMDQVLTNLI 401 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--S 178 A G ++++ + + NI + G + F + + Sbjct: 402 DNASRYTQPGDTISVTTDEDNSYNILRITDTGTGIAPEHLQQVFDRFYKVDASRKRGKQG 461 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + E L K Sbjct: 462 TGLGLFICKMIIEEHGGIIEVESQVGEGTTFIIKLPK 498 >gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 1084 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 70/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + + L L + S + H++ +P+ +I + E+L D+ + + +I Sbjct: 814 LEQANTRLLELDRLRSDFLSTVSHELRTPLTSIRSFSEILLRYEVDDPEKRRKFVAIIAS 873 Query: 56 SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103 + + + + G ++ +++ V + + + Sbjct: 874 EAERLTRMINDLLDLSRIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQSRVEIEA 933 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 + + + ++L NL + P GG + + + + S+ G Sbjct: 934 GLPQVLADADRMHQVLTNLLSNSVKFSPEGGTIRLGGRRQGEFALISVTDQGPGIPADRL 993 Query: 162 -EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + R+ E V S + Sbjct: 994 EQVFERFHQVRTPQKSHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFSFTVP 1049 >gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 926 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 A++ + + L + + H+I +P+ AI +LL +E+ E ++++R ++ Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 747 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + + G VD + DI + + + + Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDGHLPVCH 807 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 866 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914 >gi|228913339|ref|ZP_04076972.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846248|gb|EEM91267.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 422 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 257 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 316 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 317 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 376 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 377 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 415 >gi|307153723|ref|YP_003889107.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983951|gb|ADN15832.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 373 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 76/238 (31%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLI 53 +A+ + L + S H+ +P+ I +LL + + ++ I Sbjct: 135 LAQVLRQQAETQSQLKSQYISLASHEFRNPLTNIKAWAQLLQRYGHTWSSEKQQQSLERI 194 Query: 54 RLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++++ + + VD + ++ Q+ + + ++ +++ Sbjct: 195 QVAAEQMNQLLEDISTLGRTDLIKSRFNPVPVDFVAFCQNLIQIHQMMVGETYKLTLTYE 254 Query: 106 GEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +L NL A P+GG+V + + ++E ++ G Sbjct: 255 ENCDRNTIALDETLLGYLLNNLLSNAIKYSPQGGEVALKLFCQESEIYLQVQDQGIGIPP 314 Query: 161 PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + S + + V + + R+ E ++ + L K Sbjct: 315 SDLPQVFEPFQRASNVGTIPGTGLGLVIVKRVVELHGGRIEVESLEGTGTTFTVTLPK 372 >gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 870 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 60/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + L + L + + + H+I +P+ AI +LL + ++ I Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + G+ + + + + ++ + Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLKLPEN 754 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + + +++ NL A +G ++ ++ G Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGL 814 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + H + L Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866 >gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 783 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ N S + SR+ H++ +P+ +I +LL+ +R + Sbjct: 394 AREEAENASRAK--SEFLSRMSHELRTPLNSILGFAQLLEMDRGTPAQQAQVRHILRAGR 451 Query: 62 IRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106 L + L L ++ A +++ Sbjct: 452 HLLGLINEVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQADSADIRLRLPEELPAE 511 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++LLNL A GG V + VQ + S+ NG + Sbjct: 512 LCVQADRQRLVQVLLNLLSNAIKYNHPGGHVEVRVQADSDTVTLSVIDNGPGIAAEDL-E 570 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ S ++ + L + L S L + Sbjct: 571 RLFIPFERLGAAASEVEGTGLGLALSKSLLEQMDGSLGVHSTPGEGSTFSLTLPR 625 >gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 870 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 60/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + L + L + + + H+I +P+ AI +LL + ++ I Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + G+ + + + + ++ + Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLKLPEN 754 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + + +++ NL A +G ++ ++ G Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGL 814 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + H + L Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866 >gi|227834014|ref|YP_002835721.1| two-component system sensor kinase [Corynebacterium aurimucosum ATCC 700975] gi|262183499|ref|ZP_06042920.1| two-component system sensor kinase [Corynebacterium aurimucosum ATCC 700975] gi|227455030|gb|ACP33783.1| two-component system sensor kinase [Corynebacterium aurimucosum ATCC 700975] Length = 483 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 16/209 (7%) Query: 23 CHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 H++ +P+ ++ EL E ++ S +++ + L +D Sbjct: 270 SHELRTPLTSLRGYTELYRSGATKDPEFVFSKIDAESQRMSLMVEDLLALTRAEGSRLDM 329 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWT--------GEKIDLSRERAKILLNLFMVAHASLP 131 + A + + ++LLNL Sbjct: 330 REVDMLELVLSVGSSARAAFAGRTINVNNEASGIPMVNGDADRLHQVLLNLVSNGIRHGG 389 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYV 186 VT++++D + + + +G + F + + + V Sbjct: 390 EEASVTLTLRDDEEHVLIDVADDGKGISPEDAAHIFERFYRADTSRTRDTGGSGLGLAIV 449 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L ++ + + V + L K Sbjct: 450 KSLVEQHGGSISVDSELGSGSVFTVRLPK 478 >gi|153003884|ref|YP_001378209.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027457|gb|ABS25225.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 441 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 13/224 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S++ + S++ H++ +P+ + ++L E + + + Sbjct: 208 MASDALARAQSLE---QIGSKVAHELKNPLTGVKALVQLGLRNPAEATSHERLEVVDREV 264 Query: 61 IIRLKFMRLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + +T + + + + + R+ Sbjct: 265 TRMQEILHNYLSFTRPLQTVTPRRVQLGPLVSDTLVVLSARADEARVRLYAQGDATLEAD 324 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 R + LLNL A + P GG+V + V+ + +E ++ G P+ +I Sbjct: 325 PRRIKEALLNLVANAIEATPAGGEVVVEVRPAGDEAEIVVRDTGRGM-PPDTLRRIGTPF 383 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + + ++ L E H + L + Sbjct: 384 FTTREDGTGLGVVLARSVIAQHGGSLRYESEPGHGTRVRVTLPR 427 >gi|156740891|ref|YP_001431020.1| GAF sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232219|gb|ABU57002.1| GAF sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 842 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + + S L A+ L + + H++ +P+ A+ +L + + L Sbjct: 465 LRLAQQRLIQSERLTAVGELVAGVAHELNNPLTAVLGFANILQQTAPTEYQHDLAMIVES 524 Query: 55 --LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110 + L F R + VD + + + ++ + V + Sbjct: 525 ATRARRIVQNLLTFARQRQVHREEVDLNLAVRQVLSLLAYHMRTHHIVVEERLKPNLPLT 584 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTIS-------VQDSKNENIFSLKINGNLARFP 161 + +++LNL A +L +D + I + G Sbjct: 585 TADATAIKQVVLNLLNNAQQALASWHGERRILISTDSEWRDGQEWLILRISDTGPGIAPE 644 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + + + L Sbjct: 645 HLPL-IFEPFFTTKPVGEGTGLGLSICYGIVTQYHGHIHVHSVVGSGASFTVELP 698 >gi|261253003|ref|ZP_05945576.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260936394|gb|EEX92383.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 653 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + S L AL L + I H+I +P I ++EL+ D+ E ++ I Sbjct: 408 LNQTRDKLVISEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGDDSKRVAEEIEAI 467 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + + Q++ Sbjct: 468 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIEESVTLVKTGAKKRDISFETQLNA 527 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M ++ G+ + I ++ G Sbjct: 528 HTCVEVNRHQLLQILVNLQMNGIHAMQGKGRLLISSEDWVEEGKSRGAIIHVQDGGCGI- 586 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + ++ L E V S L Sbjct: 587 KEDNLKRIFSPFYTTKREGTGLGLSVSQSILSQSGGELKVESEWGKGSVFSIYLP 641 >gi|297569080|ref|YP_003690424.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924995|gb|ADH85805.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 576 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSA 60 L S L A+ L + I H+ +PI I N L+ L + +++ + Sbjct: 349 QLLHSEKLRAVGKLAASIAHEFNNPICGIRNVLQGLQRRQTLAAGDHDLVAMAVRECDRV 408 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLS 112 ++ T S ++ + + I D ++ + Sbjct: 409 ARLTSDLQSFNRPTSSQLVMLDVHAALKDILLLCQKDLENGKVEVRQELAPDLPPVRAVP 468 Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ LNL A ++ G + + +E + S +G E +I + Sbjct: 469 DQLKQVFLNLLTNAREAIGPTGGRIVIATRREDDEVMISFCDSGCGI-AAENLERIYEPF 527 Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + RL E + L Sbjct: 528 FSTKPAVKGTGLGLAVSYGIVQRHGGRLEVESREGQGACFKLFLP 572 >gi|254512486|ref|ZP_05124553.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacteraceae bacterium KLH11] gi|221536197|gb|EEE39185.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacteraceae bacterium KLH11] Length = 343 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 16/240 (6%), Positives = 60/240 (25%), Gaps = 33/240 (13%) Query: 9 LSSMDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMS 59 ++ ++ + + + H++ +P+ A+ +E L + D +Q++ + Sbjct: 104 VTHLEQAGQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDTAARDRFLQIMTDEANR 163 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKID 110 + + + R+ + E ++ Sbjct: 164 MNRLVGDLLSLNRVESEERVRPKEPLKLTGLIRSTLNTLKPLADDASVRLSLDAPDEPVE 223 Query: 111 LSRERAKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++ + ++ + G Sbjct: 224 MVGDSDQLRQVFTNLVENAIKYGGSGGVVDVIVTLSERDTAMRGPAVRIKIVDQGPGIDA 283 Query: 161 PEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + + ++ RL E V + +L + Sbjct: 284 KHLPRLTERFYRADSHRSRELGGTGLGLAIVKHILNRHRGRLRVESELGQGAVFTVILPR 343 >gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 613 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAI 61 +++ + + L S + H++ +P+ +I+ EL+ +++ +L + A Sbjct: 374 RDVTAETEIDRMKSELVSTVSHELRTPLSSIYGFTELMLSRDLKESRRELYLKTIHDEAK 433 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 VD + D ++ + + T + Sbjct: 434 RLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRHELFIDADTEQDFI 493 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L NL A P GG + +S++ E + ++ +G Sbjct: 494 IDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDHGMGIPSASLPHLF 553 Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + +A ++ +L E + L Sbjct: 554 GKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELP 605 >gi|163814968|ref|ZP_02206355.1| hypothetical protein COPEUT_01118 [Coprococcus eutactus ATCC 27759] gi|158449651|gb|EDP26646.1| hypothetical protein COPEUT_01118 [Coprococcus eutactus ATCC 27759] Length = 569 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 27/242 (11%) Query: 1 MAKNI----CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49 M + + + + L S I HD+ +PI I +E + + + Sbjct: 262 MRQRMSDFAKAKMHYEEENRQLISNISHDLRTPITTIKGYVEGIMDGVADTPEKRDRYLK 321 Query: 50 --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDK 98 M + + SV ++ + + Sbjct: 322 MIYSKANEMDSLINELSLYTNINNNAIPYEFHRVSVKDYFNDCMEEVHATLMSKNMTLTY 381 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNL 157 R I + +++ N+ + + + G+V IS+ D+ E ++ NG Sbjct: 382 RNYCDDDVMVIVDPDQLKRVINNIVTNSIKYMDKEYGQVDISIYDNDAEVKIAINDNGRG 441 Query: 158 ARF---PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P F ++ + + + E+ + + L Sbjct: 442 IDTDSLPHIFDRMYRADSARQSRGGSGLGLAICKKIVEEHGGNIYATSQIGKGTTIVFTL 501 Query: 214 EK 215 +K Sbjct: 502 KK 503 >gi|304408466|ref|ZP_07390110.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304342551|gb|EFM08401.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 623 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 70/229 (30%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + S L L L + + H+I +P+ ++ LL+ GI E Sbjct: 390 LKQTRDMLGRSEMLSVLGQLAAGVAHEIKNPLTSLKGFARLLEPSLQNKEQRFIGIMKEE 449 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + I L ++ K + F + L + ++ +++ + + Sbjct: 450 LDRIELIVNEMLVLSKPQVIMFEERDMSELLNYVIELLGTQAIMKSIEIKKEFEPVPLIA 509 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFT 165 R+ ++ +NL A ++P G I + + G P++ Sbjct: 510 CEDRQLKQVFVNLLKNAIEAMPGDGHGQIRVSLQQAGHSDSIRIEVSDQGQGI-APDRLA 568 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + ++ L Sbjct: 569 RLTEPFYTTKEKGTGLGLMMTASIVERHGGTIHFASELGVGTTVTVTLP 617 >gi|300932508|ref|ZP_07147764.1| two-component system sensor kinase TcsS1 [Corynebacterium resistens DSM 45100] Length = 539 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAFGYTGS 76 H++ +P+ ++ EL +D M + R+S L +R+ G Sbjct: 321 SHELRTPLTSVRGYAELYQSGATDDAGMVIERISEEAGRMSLLVEDLLALVRMDEGRPLK 380 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASL 130 D + L + + A +VS + D+ +++ NL A Sbjct: 381 QDRVDILELVLHAADSARAGFPGRRVSVNNKCGDIPVVIGDANRLHQVVGNLLTNALRHG 440 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHDIQFYY 185 V I++ +S+ E + +G + F + +V + + Sbjct: 441 GEDASVQINLSESQREVSIEIADDGRGIAAEDLPHLFERFYRPDVSRSRASGGSGLGLSI 500 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V L + + + +L Sbjct: 501 VKSLVEAHGGTISVASTLGEGTTFTVVLP 529 >gi|295090136|emb|CBK76243.1| Signal transduction histidine kinase [Clostridium cf. saccharolyticum K10] Length = 348 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 61/219 (27%), Gaps = 16/219 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + I H+ +P+ AI LL + + ++ + ++ +L + Sbjct: 124 ESLRNDFAANISHEFRTPLAAIEGYTTLLQDHSLTEKERDEYIHIIIDSVRQLSSLSGNI 183 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------------EKIDLSRERAK 117 ++ + + + D + + + + Sbjct: 184 LAMSRLEKQEIVTNKTRYCLDEQLRQAILLLEPLWDEKKLDLDIDMETAWYYGNADMIMQ 243 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-- 175 + +NL A P+ G + + +++ + S++ G + Sbjct: 244 VWVNLLHNAIQYTPKNGTIRVYLKNEGSLIRVSIQDTGIGMDEATIAHIFDKFFRKDKNS 303 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E D + L Sbjct: 304 SSGNGLGLPMVKRILELSHGSITVESRPDEGSSFTVTLP 342 >gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 810 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 17/226 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +VD +I + + ++ + + Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKVSKGVELIFEEPFPECY 697 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + +++ N A +G Q S + F ++ G ++ + Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGCITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 757 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + + + Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGVGSCFWFT 803 >gi|283798527|ref|ZP_06347680.1| sensor histidine kinase [Clostridium sp. M62/1] gi|291073788|gb|EFE11152.1| sensor histidine kinase [Clostridium sp. M62/1] Length = 348 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 61/219 (27%), Gaps = 16/219 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + I H+ +P+ AI LL + + ++ + ++ +L + Sbjct: 124 ESLRNDFAANISHEFRTPLAAIEGYTTLLQDHSLTEKERDEYIHIIIDSVRQLSSLSGNI 183 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------------EKIDLSRERAK 117 ++ + + + D + + + + Sbjct: 184 LAMSRLEKQEIVTNKTRYCLDEQLRQAILLLEPLWDEKKLDLDIDMETAWYYGNADMIMQ 243 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-- 175 + +NL A P+ G + + +++ + S++ G + Sbjct: 244 VWVNLLHNAIQYTPKNGTIRVYLKNEGSLIRVSIQDTGIGMDEATIAHIFDKFFRKDKNS 303 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E D + L Sbjct: 304 SSGNGLGLPMVKRILELSHGSITVESRPDEGSSFTVTLP 342 >gi|205375590|ref|ZP_03228377.1| hypothetical protein Bcoam_21676 [Bacillus coahuilensis m4-4] Length = 320 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60 N+ + L + + I H+I +P+ + L+LL + I + L+ A Sbjct: 80 NVIKSAEKQALAGRIAAGIAHEIRNPLTTVRGFLQLLQPRMDEEISELFSSLLIPEIDRA 139 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK--- 117 +K + S I + + + + + ++ E + K Sbjct: 140 NTIIKDFLQIAKPSDSSLETIEISEFIKNYLGNFLHSEALLHNFDLEFVIDPLAEGKLFV 199 Query: 118 --------ILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIV 168 + LNLF + ++ +G + N NG E T + Sbjct: 200 GDKEKLFSVFLNLFQNSKQAMTKGKLSIQILASYANNCLQIFFMDNGPGI-PKEIVTHVF 258 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + L I+D L Sbjct: 259 DPFFTTKDEGTGLGLSISRKIIENHGGSLTISSIED-GTQFMIELP 303 >gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72] gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72] Length = 852 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 52/235 (22%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H++ +P+ I EL+ + DEV S Sbjct: 606 LEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAELIRDDAPNDEVRDHADTIYQSG 665 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----W 104 + + D L + + + Sbjct: 666 EHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALLQQVANLHGTMAQQKGLAFATEFAPGL 725 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 +++ NL A P G ++ ++ I ++ G Sbjct: 726 PATLAGDPTRLRQVINNLLNNAIKFTPAGEVKLLARTEADR-LIVGVRDTGPGIAAEMQP 784 Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + E + Sbjct: 785 VIFDRFRQASTFITREHGGTGLGLALVREVVALMGGAVRLESAPGEGAYFEFWIP 839 >gi|312864534|ref|ZP_07724765.1| PAS domain S-box protein [Streptococcus downei F0415] gi|311099661|gb|EFQ57874.1| PAS domain S-box protein [Streptococcus downei F0415] Length = 453 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 69/223 (30%), Gaps = 25/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE L+E + + L+ R Sbjct: 211 LFVSTVSHELRTPLTSVKSYLEALNEGALNEEVAPSFIQVSLDETNRMMRMISDLLQLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------TGEKIDLSRERA 116 + + + VI + K Q S + + Sbjct: 271 IDNDTSHIEVEMTNFTAFITVILNRFDQIKSQQDSDKDYEIVRNYPLNPIWVEIDTDKMT 330 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 ++L N+ A P GG++T+S+ ++ + I S+ G + F + + Sbjct: 331 QVLDNILNNAIKYSPDGGQITVSMTTTETQLIISISDQGLGIPKKDLPLIFDRFYRVDKA 390 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 RSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGKGSTFTIVLP 433 >gi|167772672|ref|ZP_02444725.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM 17241] gi|167665150|gb|EDS09280.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM 17241] Length = 566 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 60/216 (27%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + H++ +P+ +I E+++ +V + A + + Sbjct: 344 FAANVSHELKTPLTSISGFAEMMENGMADNSQDVRRFAGRIYTQAQRLIALTDDIIRLSR 403 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------------IDLSRERAKILLNLF 123 + + ++ + ++ + ++ + +++ NL Sbjct: 404 IERADLTENVPVELRALCDRAVETLRFTAEQKQVEIAVTGGPAPVRGDRQMLDELITNLM 463 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178 A GG+V +S+ + G F + + + Sbjct: 464 DNAVKYNRPGGRVDVSLSVQDGLVCLRVADTGIGIPKEHQERIFERFYRVDQSRSKQTGG 523 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E + ++ L Sbjct: 524 TGLGLSIVKHVVERHGGSITLESVPGEGTAVTVRLP 559 >gi|229042512|ref|ZP_04190257.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676] gi|229108260|ref|ZP_04237881.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15] gi|229148988|ref|ZP_04277233.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550] gi|228634528|gb|EEK91112.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550] gi|228675173|gb|EEL30396.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15] gi|228726865|gb|EEL78077.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676] Length = 463 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|303246500|ref|ZP_07332779.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492210|gb|EFL52085.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 505 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 64/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 + ++ + S L L + + H I +P+ ++ L L+ + + Sbjct: 264 LEQSRGHLMQSEKLAMAGRLAAGVAHTIRNPLTSVKMRLFSLERGLKLDPTQKEDFEVIA 323 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109 + I L+F R V + + + + V V Sbjct: 324 EEIGHIDTIVRNFLEFARPPKLTAQPVSLSDVVDTTLTLLKHRLESYNVTVTVDRVRPLP 383 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161 ++ + ++ L A ++ GG++ I + +G Sbjct: 384 PINADPDQLKEALVNLVLNACEAMIEGGEILIREEVGVLDPHGRILAVRVSDSGPGV-PQ 442 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E+ + + + + + Sbjct: 443 ALVENIFQPFFTTKGEGSGLGLPIVKRIVEEHGGWITVQSPEGKGTTFTMVFP 495 >gi|228908374|ref|ZP_04072218.1| hypothetical protein bthur0013_25350 [Bacillus thuringiensis IBL 200] gi|228851282|gb|EEM96092.1| hypothetical protein bthur0013_25350 [Bacillus thuringiensis IBL 200] Length = 360 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 74/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKSDQISVKQELNRVINMIFPLCNMNTIHITQDFSEAVIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|296501408|ref|YP_003663108.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|296322460|gb|ADH05388.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 463 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 807 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 54/228 (23%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E + Q + + + Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ T + ++ + Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVPAGVELVFEKCLPECH 688 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A G + + F ++ G + T Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDIGMGIPRNKIKTVF 748 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + E + Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796 >gi|228477483|ref|ZP_04062119.1| sensor protein YycG [Streptococcus salivarius SK126] gi|228250918|gb|EEK10106.1| sensor protein YycG [Streptococcus salivarius SK126] Length = 446 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ +++E+ + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALDEEIAPNFIKVSLDETNRMMRMISDLLALSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115 + T + I + + + I + + Sbjct: 270 IDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNTGKTYEIIRDYPVNSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+S++ + ++ I S+ G + F + + Sbjct: 330 TQVVDNILNNAIKYSPDGGKITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 ARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 433 >gi|225868179|ref|YP_002744127.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus] gi|225701455|emb|CAW98588.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus] Length = 450 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + T + + + I L + Sbjct: 271 IDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+ ++++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKIIVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHRGFIWAKSDYGKGSTFTIVLP 434 >gi|163938325|ref|YP_001643209.1| multi-sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163860522|gb|ABY41581.1| multi-sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 672 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEERTYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E Sbjct: 506 ANSIITEFLSIGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELFLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G + ++ +N + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKECQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 936 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 63/228 (27%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + L + + H+I +P+ AI +LL E E + I++ + Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELSERQEYIKIVRENND 757 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + G VD + DI + + + + + Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVLDNHLPVCH 817 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924 >gi|253569873|ref|ZP_04847282.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840254|gb|EES68336.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 631 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 61/231 (26%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + L + + + H+I +P+ AI +L ++ E+ + + + Sbjct: 398 LSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIEDRKEMREYADIIETNT 457 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105 + +D + +IEQ + + + + Sbjct: 458 DLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTLTFTERLPE 517 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++ N + A G + F + G E+ Sbjct: 518 CTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCGM-SEEQCR 576 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + E + L Sbjct: 577 HVFERFVKYNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627 >gi|258514100|ref|YP_003190322.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257777805|gb|ACV61699.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 522 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 S L+AL L + + H++ +P G I EL+ ++ S + Sbjct: 281 ENQLRQSEHLIALGRLATGVAHELRNPAGIIKTLAELMHNEYSLVTGIEEFTRSIEEQVD 340 Query: 63 RLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KID 110 R S+ L + + + V + Sbjct: 341 RQNTVIQELLDFGRPSKCAFKKCSVNDLLTGVLSFSSAMLRKQNITVHLAFQESIPLIWV 400 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++ +NL + A ++P GG + I+ K +G PE T I D Sbjct: 401 DTEKLKQVFVNLIVNAAEAMPDGGMMEITTTCKDKFLSIQFKDSGEGI-SPELKTLIFDP 459 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + I + + +L Sbjct: 460 FYTTKATGTGLGLPICYQNLNMHGGTIKVDSIRGQGAIFTIILP 503 >gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 617 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 76/239 (31%), Gaps = 28/239 (11%) Query: 1 MAK-NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53 M L + S + H++ +P+ ++ ++ + E ++ I Sbjct: 379 MRDVTEQRELDRAK--SNFISMVSHELRTPLNSVLGFANVILSGATGPLSDRQREFLEYI 436 Query: 54 RLSSMSAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + SS + + + S + +A ++ +++++ Sbjct: 437 QASSRHLVQLVSDILDLSRMDAGTFTLHKSKVLPEIIAKQVVSQLSGLAAEQNIELAFLS 496 Query: 107 EKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +K R ++L+NL A P GGKV + V++ + +FS+ G Sbjct: 497 DKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIVRVRNQGDHVLFSVSDTGPGI-SE 555 Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + L ++ ++ + L Sbjct: 556 EDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQHGGKIWVDSTPGQGATFYFTLP 614 >gi|29349762|ref|NP_813265.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341672|gb|AAO79459.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 631 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 61/231 (26%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + L + + + H+I +P+ AI +L ++ E+ + + + Sbjct: 398 LSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIEDRKEMREYADIIETNT 457 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105 + +D + +IEQ + + + + Sbjct: 458 DLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTLTFTERLPE 517 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++ N + A G + F + G E+ Sbjct: 518 CTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCGM-SEEQCR 576 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + E + L Sbjct: 577 HVFERFVKYNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627 >gi|323357338|ref|YP_004223734.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] gi|323273709|dbj|BAJ73854.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] Length = 546 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 70/230 (30%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII 62 +I + + L + + H++ +P+ AI +L LD+ + +V + + + + + Sbjct: 309 DITALIEAERARERLAATVSHELRNPLTAIIGHADLALDDPDLSPKVREQLEVIAGAGER 368 Query: 63 RL----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + D++ + + A + + + ++ Sbjct: 369 MQKLISEILANSRGVFREKDTPKTADAMRIITSSLESFRPAAAARRVTILDDLPDAAEVV 428 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ A P GG V +S + ++ + G + Sbjct: 429 GDAFRLRQAFDNILSNAIKYTPGGGSVHLSAEVGDDDVVLRFADTGIGIPTEDLPRIFDP 488 Query: 170 GNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + EN + E ++ +L Sbjct: 489 YFRSRAARDSSTPGTGLGMGIVRGIIEENGGSVTLESDLGSGTTVTVVLP 538 >gi|254508931|ref|ZP_05121039.1| sensor histidine kinase [Vibrio parahaemolyticus 16] gi|219548170|gb|EED25187.1| sensor histidine kinase [Vibrio parahaemolyticus 16] Length = 675 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ D+ E + I Sbjct: 430 LNQTRDKLVVNEKLAALGELTAGIAHEINNPSAVILGNVELIQFELGDDAERVKEEIDAI 489 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ +++ Sbjct: 490 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPVVDESITLVKTGTKKRDVEFVTKLNA 549 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M ++ D I + G Sbjct: 550 KSSVEVNRHQLLQILVNLQMNGIHAMDGKGKLTITTEDWLEGDRCVGAIIHVTDQGCGI- 608 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + + + L E S L Sbjct: 609 KPENLKRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKVESQWGKGTTFSIYLP 663 >gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus sphaericus C3-41] gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus sphaericus C3-41] Length = 498 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + + +++I S + ++ + Sbjct: 279 FVANVSHELRTPITSIKGFSETLLDGAYKDEKMLISFLEIIYKESNRLQMLIQDLLELSK 338 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + G D LI ++ D + +V + + + + +I+ N Sbjct: 339 IEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDGDVQVMGDANRIIQIVTN 398 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176 L A P V+I +++++ I ++ G E F + Sbjct: 399 LITNAITYSPENTTVSIRLKENETYGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNS 458 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + R+ E + ++ K Sbjct: 459 GGTGLGLAIVKHLVEAHHGRIQVESEVGVGTTMIVMIPK 497 >gi|328954055|ref|YP_004371389.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328454379|gb|AEB10208.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 496 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 62/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + ++ + S L L + + H I +P+ ++ L + + ++ + + S Sbjct: 253 LKQSQVHLVQSEKLAMVGKLAAGVAHSIRNPLTSVKMRLYSMRRHLNLPVGQLEDLDVIS 312 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKI 109 +R Y I VI+ + V ++ Sbjct: 313 QEIGHIDTIVRNFLEYARPPKLTIQQCSPSAVIDMALTLLRPRLESFKVLVHLNRQQPLP 372 Query: 110 DLSRERAKILLNLFM---VAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + ++ A ++ + + + ++ G Sbjct: 373 EIWADPDQLKEVFVNLIVNACEAMEKGGLITITETEDFIAGIGRVVQIVIQDTGPGIPEG 432 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I S + + + + E+ + + + S L Sbjct: 433 -MQENIFQPFFTSREEGTGLGLSIALRIIQEHGGWIEVKSPPGQGAIFSLTLP 484 >gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 820 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 553 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 611 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659 >gi|115376527|ref|ZP_01463760.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1] gi|310822047|ref|YP_003954405.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115366460|gb|EAU65462.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1] gi|309395119|gb|ADO72578.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 612 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 74/234 (31%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 + + + L A+ L + + H++ +P+ I ++L+ + + ++++ I Sbjct: 379 LRTAQAQLVETQKLAAVGQLGAGVAHELNNPLAGILGYVQLMLMSRPDSDPDLDMLRKIE 438 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWT----- 105 S+ + + D + + + + + + Sbjct: 439 GSAKRCKEITQNLLRFSQQRERTDLRAVNLNVVVRDALTLTENQVKAEGISLVLELASSG 498 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEK 163 + S + ++ +L L A ++ + +T+ + + F ++ G PE Sbjct: 499 VRVMADSGQTSQAILALVSNARTAMQKTSAKTLTVRTGERDGKGYFEVEDTGKGI-APEH 557 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++I + + + + + E + + L K Sbjct: 558 RSRIFEPFFTTKDVWSNVGLGLSVTYRVVTEAGGSIDVRSEPGKGSCFTVWLTK 611 >gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 937 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H++ +P+ AI E++ E + ++ + Sbjct: 427 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 484 Query: 62 IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 K + Y S + ++ +I+ I ++ + Sbjct: 485 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 544 Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + LLNL A G + + V ++ +F + +G PE Sbjct: 545 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTIQLQVAAQGDQVVFKVVDSGIGM-SPE 602 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + ++ E + + L + Sbjct: 603 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 661 >gi|52082612|ref|YP_081403.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52788010|ref|YP_093839.1| YycG [Bacillus licheniformis ATCC 14580] gi|319648477|ref|ZP_08002693.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52005823|gb|AAU25765.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52350512|gb|AAU43146.1| YycG [Bacillus licheniformis ATCC 14580] gi|317389556|gb|EFV70367.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 614 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 67/220 (30%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ + + LE L + I + + + + I + + Sbjct: 383 FVANVSHELRTPLTTMRSYLEALAEGAWQDPNIAPRFLNVTQNETERMIRLVNDLLQLSK 442 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + + + + ++ ++ + ++L N Sbjct: 443 FDSKDYQFNKEWIHFIRFFSLIIERFEMTKEQHVEFISNLPDRELYVEIDPDKITQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VES 174 + A P GG +T SV ++ E S+K G + F + + Sbjct: 503 IISNALKYSPEGGHITFSVDVNEEEELLYVSVKDEGVGIPRKDVEKIFERFYRVDKARTR 562 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + I+ ++ L Sbjct: 563 RLGGTGLGLAIAKEMVQAHSGDIWADSIEGKGTTITFTLP 602 >gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis NCTC 9343] gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis 638R] Length = 522 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 19/228 (8%) Query: 5 ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 I + + + + + + + H+I +P+ AI +L+ E E E Q + ++ Sbjct: 293 IAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEADNECEKRQYADIVEHNST 352 Query: 62 IRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L + D + L ++ +V Sbjct: 353 VLLNLFNDILDLSALEAGSLELSYHPVRLKDICLQLYELHVKSVKPEVRLVLDEVDSQLC 412 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L+NL A G + Q + F + G T Sbjct: 413 IQGDWERISQVLVNLITNAIKFTSVGE-IHFGFQKKADMVQFYMSDTGKGIPAERVATIF 471 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +L + R+ V L Sbjct: 472 QRFGKIDDFVQGTGLGLTICRMLVEKMGGRIWVRSKQGEGTVFYFTLP 519 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] gi|151282467|gb|ABR90877.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + + + L A+ + + + H+I +P+ + +L++L + +QL+ Sbjct: 436 LVQAQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAAKPVQGELQLM 495 Query: 54 RLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + + + + + Sbjct: 496 DQQIYRINTIVTKLLQFASPGEFAGYVETVVIDEIVADSLVLVRHLLNQSRIAVVHKKEA 555 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLAR 159 T E ++L+NLF A ++ D K S+ G+ R Sbjct: 556 TLPVSINRGELQQVLINLFTNAIHAMKDGGSLTISTSDWQEADGKRGVAISVADTGSGIR 615 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L + + + L Sbjct: 616 KEDIAHIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVRSEEGAGTEFTVRL 669 >gi|115375212|ref|ZP_01462478.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310818911|ref|YP_003951269.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367774|gb|EAU66743.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309391983|gb|ADO69442.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 836 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 69/234 (29%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 +A + AL L + + H++ +P+G I N++ L G ++ ++ Sbjct: 597 LAATRAEMVKRERFAALGELSAIVAHEVRNPLGVIFNAVASLRRLMPSKGDAAMLLDILA 656 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGE 107 S + + + LG + Q + VQ+ Sbjct: 657 EESDRLNRIVGDLLDYTRPRDPILHPEDLGRVIQDALEAARLQGGPGGQGVSVQIHVEPS 716 Query: 108 KIDLSRERA---KILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 + +R + L+N+ + A ++P ++ + G Sbjct: 717 IPPVPMDRRLIRQALVNIIVNAIHAMPHGGVVRVNARREPHAGRDFLRIDVTDQGMGI-P 775 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + V + E++ + E + L Sbjct: 776 AELLHRVFEPFFTTKAQGTGLGLAVVKRILEEHRGEIAVEGAQGQGTTFTLRLP 829 >gi|73748977|ref|YP_308216.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73660693|emb|CAI83300.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 394 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K++ S L ++ L + + H+I SP+ +I E L +E + I Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107 A+ F R + ++ E + + V Sbjct: 187 EALRAAKVVNNLRTFARSYEQEKKLCGLNDVIRKSIELREYELVIQNIVVELELAENLPA 246 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164 + + ++L+N+ + A ++ + +D N ++ NG PE Sbjct: 247 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTEDMGNFIRMIIEDNGPGI-SPEIA 305 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + D + + E+ ++ E L Sbjct: 306 ERVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 357 >gi|300785438|ref|YP_003765729.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] gi|299794952|gb|ADJ45327.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] Length = 590 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 15/210 (7%) Query: 18 LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 L S + H++ +P+G I L EL + + ++Q + Sbjct: 378 LISDVSHELRTPLGTIRGWLVATQDGVAEL--DDELVSSLLQETSVLQHLVDDLRDLALA 435 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 G + D+ + + V +I+ NL A Sbjct: 436 DAGMLRLDRVEVNATDLLRHVAAAHGDRVDTDVPDDLLVEADPVRLHQIVGNLLANAVRH 495 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFY 184 P G++ + + + + ++ G + F + + + Sbjct: 496 TPPDGRIRLHGRREGPDVLITVTDTGTGIAPEDLPHVFDRFWRADKSRTRRTGGSGLGLA 555 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V LA + + + Sbjct: 556 IVRKLAEAQDGAVTVTSAPGEGSTFTLRMP 585 >gi|205374819|ref|ZP_03227612.1| sporulation sensor histidine kinase E [Bacillus coahuilensis m4-4] Length = 503 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 64/226 (28%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQL 52 + + L L V L + + H+I +P+ I ++L + E + Sbjct: 270 KQAEEYLLQKEKLSVVGELAAGVAHEIRNPLTTIKGFIQLYKDEQRYSEFDSLILEELGR 329 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 I + + + K + + + + + + K + Sbjct: 330 IEMITSEMLSLGKPQAHHLKNLDIEIVVKETVEFLTPQARLLNIGFVLTKNVDTGKELIY 389 Query: 113 RERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ER ++ + ++ V + N+ + ++ +G E +++ Sbjct: 390 GERNQLKQVFLNLFKNAMESMEATGGTVYCHISSEHNQCVMTIIDSGCGI-PKEVLSRLG 448 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++K L + +L Sbjct: 449 EPFYSLKEKGTGLGVMMCHRIIQQHKGTLSYTSEVGEGTKVEVILP 494 >gi|116669431|ref|YP_830364.1| periplasmic sensor signal transduction histidine kinase [Arthrobacter sp. FB24] gi|116609540|gb|ABK02264.1| periplasmic sensor signal transduction histidine kinase [Arthrobacter sp. FB24] Length = 555 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 58/221 (26%), Gaps = 20/221 (9%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIR------ 63 L A + + H+ +P+ +I +ELL + + + + +A Sbjct: 334 LAAKDDFVANVSHEFRTPLTSILGYVELLLDDHDGLRAPHREALMIIRRNAERLLGLVSD 393 Query: 64 -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + ++ + + V R E S +++ Sbjct: 394 LLASRSGQLIVSPQAVNVAELVRASISAALPRAAAAKVRLRADAPERLEAHVDSGRMSQV 453 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 L NL A P GG V +S+ + + + G ++ Sbjct: 454 LDNLVSNAIKYSPNGGDVVVSLDSDGSHLVCRVSDTGMGMSDKDQAEVFTKFFRTGNVRN 513 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + + + Sbjct: 514 TAIPGVGLGLSISKAIVEAHGGSIQLRSALGEGTTFTVRVP 554 >gi|320352828|ref|YP_004194167.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320121330|gb|ADW16876.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 525 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%) Query: 1 MAKNICFNL-------SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEV 49 MA+ L + L +L + + + H+I +P+G + ++ E+L + Sbjct: 286 MAERAEERLRLEEQLNEAQRLASLGKMVAAVSHEIKNPLGIVRSTAEILGNRISKVAPGN 345 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQ 101 +L + +R + + + + +F R++ Sbjct: 346 ERLANIIVEETSRLDAIVREFLDFARPREVDKVPGSLNGVVERLLRFMEPEFQQKAVRLE 405 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGN 156 V ++ + +I L + ++ + ++ + +G Sbjct: 406 VRLDPNLPEIPFDSEQIYQVLLNIVFNAIQAMPQGGDLLLNTMLEPGGGAVAVEVADSGI 465 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PEK QI + + +++ + + + L Sbjct: 466 GI-PPEKLEQIFTPFYTDKNRGTGLGLCIAKSIVEKHQGVIGVKSTPGEGSIFRVTLP 522 >gi|196033201|ref|ZP_03100614.1| sensor histidine kinase [Bacillus cereus W] gi|195994630|gb|EDX58585.1| sensor histidine kinase [Bacillus cereus W] Length = 484 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M+ + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMEKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|217975398|ref|YP_002360149.1| histidine kinase [Shewanella baltica OS223] gi|217500533|gb|ACK48726.1| histidine kinase [Shewanella baltica OS223] Length = 717 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGI- 635 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + L Sbjct: 636 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689 >gi|153002811|ref|YP_001368492.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS185] gi|151367429|gb|ABS10429.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS185] Length = 717 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGIA 636 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I D + D + + + + + L Sbjct: 637 PDQLG-RIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689 >gi|302035921|ref|YP_003796243.1| hypothetical protein NIDE0542 [Candidatus Nitrospira defluvii] gi|300603985|emb|CBK40317.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 910 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + L +L + S + H+I +P AI + EL+ E D V Q A Sbjct: 683 QDELIQAEKLSSLGTMVSGMAHEINNPAQAILSMAELIQEEDDPDTVKQFAADIVGYARH 742 Query: 63 RLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +R GY + L+ + + F V+ Q Sbjct: 743 VSTVVRDFAGYARAAGRDGETEIDVAERLLEAVKMVRRGPHFGQVEIATQFDAPVFLRAR 802 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 E ++ +NL A ++ G +T++ ++ G +I D Sbjct: 803 KGEIDQVFVNLISNATQAMEGIGCLTLTTGQDGRWIQVTIADTGPGIPAS-IRPRIFDPF 861 Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E + Sbjct: 862 FTTKTAGKGTGLGLSIVHKIVIKYAGTITVESTEGGGTTFRLRFP 906 >gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 592 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRL 69 + + H++ +P+ AI E L ++ +Q + + L+ +L Sbjct: 368 FVANVSHELRTPLAAISGFAETLMMENSDNPAVQQFARIIYDEAQRMTRMVNSLLQLSKL 427 Query: 70 AFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLN 121 LG +V+V ++L+N Sbjct: 428 ESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRLKVEVELPENGLVVRADRDRIVQVLMN 487 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177 L A P G VT+ E + + G E F + + T Sbjct: 488 LLDNATRFSPPDGTVTVRGTLLPGEILVEVIDEGPGIPEEEAARVFERFYRVDKARTRGQ 547 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ + + V L Sbjct: 548 GVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVFYFSLP 584 >gi|256848491|ref|ZP_05553933.1| two-component sensor histidine kinase [Lactobacillus coleohominis 101-4-CHN] gi|256714758|gb|EEU29737.1| two-component sensor histidine kinase [Lactobacillus coleohominis 101-4-CHN] Length = 620 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 28/226 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ ++ + +E L + I + +++++ + I + + Sbjct: 380 QFVSNVSHELRTPLTSVKSYVEALSDGAWKDAEIAPQFLKVVQDETDRMIRMINDLLSLS 439 Query: 68 --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + +D + E + +R + Sbjct: 440 RMDSGTVKLNLEYVNINELFNYILDRFDMILKKETDPQQKKYTIQRKITQKDLWVEIDTD 499 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 +++ N+ A P GG +T + ++KN I S+ G + Sbjct: 500 TFTQVIDNIMNNAVKYSPDGGVITARLMETKNHVIMSIADQGLGIPRKDIGHIFDRFFRV 559 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + I+ L Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSIEGKGSTFYISLP 605 >gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] Length = 858 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 26/252 (10%), Positives = 60/252 (23%), Gaps = 40/252 (15%) Query: 1 MAKNICFNLSSMDLV--------------ALLCSRICHDIISPIGAIHNSLELLDEVGIE 46 M + ++ + + + + H++ +P+ AI E+L E + Sbjct: 311 MQRTEELE-QALKIAGEARKEAEDANQTKSQFVANMSHELRTPLNAIIGYSEILLEESED 369 Query: 47 D------EVMQLIRLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQ 88 D ++ I S + + + + + Sbjct: 370 DGNTQYAPDLERILNSGKHLLALVNDILDISRIEAGKMELYLESFPICREIQTVIDTARP 429 Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 VI+ G + +ILLNL A G ++ + Sbjct: 430 VIDKNQNSLVFECDDSLGHMRGDLTKFRQILLNLISNAAKFTQVGTLTLSVRREDTDHFT 489 Query: 149 FSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEII 202 ++ G E+ ++ + A + Sbjct: 490 IAVADTGIGMN-EEQLGRLFQVFSQADASTTRKYGGSGLGLSISRHFARMMGGDITATST 548 Query: 203 DDHNVVLSALLE 214 V + L Sbjct: 549 PGSGSVFTVSLP 560 >gi|94970384|ref|YP_592432.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552434|gb|ABF42358.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 970 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 26/238 (10%) Query: 1 MAKNICFN---LSSMDLVA--LLCSRICHDIISPIGAIHNSLELL--------DEVGIED 47 M + + L + LL + + H++ +P+ I + ++L + + Sbjct: 727 MTDRVELESQLAQAEKLSSIGLLAAGVAHEVNTPLAVISSYAQMLSKQLQGDERRSALLE 786 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTG 106 ++ +S L F R VD + D + +V+ Sbjct: 787 KITTQTFRASEIVNNLLNFSRTGSSEFAEVDINKVVSDTLALLEHQLKTSRVKVENHLAP 846 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ LNLF+ A ++P GG ++I+ ++ + G+ PE Sbjct: 847 TLPKIYGNTGKLQQVFLNLFLNAKDAMPSGGTLSITTRN-GRAVEVEVCDTGSGI-APEH 904 Query: 164 FTQIVDGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + E+ ++ + + Sbjct: 905 IQRIYDPFFTTKKSPRQGHSGGTGLGLAVTYGIIQEHAGKIRVDSRPGEGTQFTMEFP 962 >gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 456 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 66/223 (29%), Gaps = 25/223 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + + H++ +P+ +I ++L + + + + L + Sbjct: 227 SEFLANMSHELRTPLNSIIGFSDVLYNESHGPLNEYQKKYTSNVLRNGKHLLDIINDILS 286 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SWTGEKIDLSRERAK 117 + + L E ++ D I + + + + + Sbjct: 287 ISNIETGTMELHINEFIVSDAIDEVESLMILIASEKDIDLTCNIDIGMPTIKTDMIKFKQ 346 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---- 173 IL NL A +GG VTI + S + S+K +G PE ++ + + Sbjct: 347 ILYNLVHNAIKFTDQGGSVTIGGKISDDLVHISVKDSGIGV-SPEDQDKLFNPFFQLDSS 405 Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + ++ Sbjct: 406 NARKYGGTGLGLALVKKFVEMHGGEIWVESEVGKGSTFTFIIP 448 >gi|312868489|ref|ZP_07728689.1| PAS domain S-box protein [Streptococcus parasanguinis F0405] gi|311096234|gb|EFQ54478.1| PAS domain S-box protein [Streptococcus parasanguinis F0405] Length = 450 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 28/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115 + + L I + K + + Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +++ N+ A P GGK+ + ++ + + I S+ G + +I D Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMRTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVD 389 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 KARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434 >gi|296876106|ref|ZP_06900160.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912] gi|296432817|gb|EFH18610.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912] Length = 450 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 28/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115 + + L I + K + + Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +++ N+ A P GGK+ + ++ + + I S+ G + +I D Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMRTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVD 389 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 KARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434 >gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 371 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 61/244 (25%), Gaps = 31/244 (12%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEV------GIED 47 K + S L A + + H++ +P+ +I +++ ++ Sbjct: 114 RKKAEEAMLSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSLNELQK 173 Query: 48 EVMQLIRLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 + + + + + + + S + + + Sbjct: 174 KFISNVISNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIASEKNI 233 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 K + + +I+ NL A G KV I + S + S+K +G Sbjct: 234 ELKFNIDIGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIRGEISDDFVHISVKDSG 293 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 ++ + V + ++ E Sbjct: 294 IGISPDDQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGKGSTFG 353 Query: 211 ALLE 214 + Sbjct: 354 FRMP 357 >gi|323499062|ref|ZP_08104042.1| hypothetical protein VISI1226_21029 [Vibrio sinaloensis DSM 21326] gi|323315897|gb|EGA68928.1| hypothetical protein VISI1226_21029 [Vibrio sinaloensis DSM 21326] Length = 675 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ ++ E ++ I Sbjct: 430 LNQTRDKLIINEKLAALGELTAGIAHEINNPTAVILGNVELMQFELGEDAQRVQEEIEAI 489 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ + Sbjct: 490 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPVIEESITLVKTGSKKRDINFVTDLQA 549 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M ++ I ++ G Sbjct: 550 KASVEVNRHQLLQILVNLQMNGIHAMKGVGTLTISSEDWREGSECIGAIIHVEDQGCGI- 608 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + + + L E V S L Sbjct: 609 KPENLKRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKVESQWGEGSVFSLYLP 663 >gi|298384034|ref|ZP_06993595.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298263638|gb|EFI06501.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 631 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 61/231 (26%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + L + + + H+I +P+ AI +L ++ E+ + + + Sbjct: 398 LSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIEDRKEMREYADIIETNT 457 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105 + +D + +IEQ + + + + Sbjct: 458 DLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTLTFTERLPE 517 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++ N + A G N F + G E+ Sbjct: 518 CTLYTDKNRLIQLISNFVINAIKFTQTGSIRMGYRLKDANTICFYVSDTGCGM-SEEQCK 576 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + E + L Sbjct: 577 HVFERFVKYNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627 >gi|289432973|ref|YP_003462846.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. GT] gi|288946693|gb|ADC74390.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. GT] Length = 394 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K++ S L ++ L + + H+I SP+ +I E L +E + I Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107 A+ F R + ++ E + + V Sbjct: 187 EALRAAKVVNNLRTFARSYEQEKKLCGLNDVIRKSIELREYELVIQNIVVELELAENLPA 246 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164 + + ++L+N+ + A ++ + +D N ++ NG PE Sbjct: 247 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTEDMGNFIRMIIEDNGPGI-SPEIA 305 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + D + + E+ ++ E L Sbjct: 306 ERVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 357 >gi|94266263|ref|ZP_01289969.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93453145|gb|EAT03613.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 662 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 16/227 (7%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K I + + L AL + + I H+I +P+ +I + +++L E + + + + Sbjct: 428 KTIEDKIAQTEKLSALGRVAAGIAHEIGNPLTSISSFVQILKEQAGDKGTRENLDRIEHN 487 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDL 111 +K + ++ I +I +IE ++QV + + Sbjct: 488 IQRIIKILNQMSRFSKVPTMEIREHNINDLIESCLEIVKFDKKLKTVKLQVELADQLPPV 547 Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +NL + A ++ G + + + NG + QI Sbjct: 548 RVDDGNLIQVFINLILNAADAIGESGGTITIRTFEGQNQVVAQICDNGPGI-PEDLQNQI 606 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L E V +L Sbjct: 607 FDPFFTTKEKGTGLGLSISYEIVKKFGGDLFVESQAGQGGVFFIILP 653 >gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 885 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 618 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 676 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 724 >gi|195978500|ref|YP_002123744.1| TCS sensor kinase VicK [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975205|gb|ACG62731.1| TCS sensor kinase VicK [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 450 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + T + + + I L + Sbjct: 271 IDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDDDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+ ++++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKIVVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHRGFIWAKSDYGKGSTFTIVLP 434 >gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 641 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 76/226 (33%), Gaps = 21/226 (9%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR 63 L + + + HD+ SP+ AI +EL++ ++ + ++ I++S + Sbjct: 414 KLDQIK--SDFVHTVSHDLRSPLTAILGYVELIERVGTVNDLQRDFIRRIQVSVHNITSL 471 Query: 64 LKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKID---LS 112 + + D+ +E + +Q+ + Sbjct: 472 VDDLLDLGRIEAGFDTRKEPVALDAIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANP 531 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +++ NL A P+GGK+ +S++ N+ +F + NG + Sbjct: 532 VQMRQMVDNLLDNAIKYTPQGGKIQVSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYR 591 Query: 173 ES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V + ++ R+ + + +L Sbjct: 592 ASNAAPDVSGTGLGLAIVKSIVEAHEGRIWVDSAVGTGSTFTVVLP 637 >gi|163756741|ref|ZP_02163852.1| histidine kinase [Kordia algicida OT-1] gi|161323416|gb|EDP94754.1| histidine kinase [Kordia algicida OT-1] Length = 359 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 15/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 + K + + + + + I H++ +P+ I ELL + + + Sbjct: 131 LLKRQMEHSDRLRIFGKITAGIAHELNTPLANILGFAELLKDDLKNNYQVTQDLDKIIDN 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEK 108 + + F ++ + D +++ ++ Sbjct: 191 SIFAREVVKKLMFFACEMPQEIQKLNINPIIKDAISLLDASFKKASVNYTIKIINKELFL 250 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +I+ NL + A P+ G VTI + I + G E ++ Sbjct: 251 RADKIQLTQIIFNLIINAIYFSPKNGLVTIEAFQTSKNIILKVSDQGIGL-SKEALEKVF 309 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + V + + + + ++ + L K Sbjct: 310 QPFYTTKPIGDGSGLGLSVVHGIVASHNGTITAKNNVENGATFTVTLPK 358 >gi|163943361|ref|YP_001642591.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163865558|gb|ABY46616.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 801 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + I H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + +++ +T + Sbjct: 632 RIESITNEFMAVAKPQVVRIQPNDISVLTDQVLLILQPQAMMNNIQIRTDYTPGIPLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + ++ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQIDKLDNDQISIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|149369868|ref|ZP_01889719.1| histidine kinase [unidentified eubacterium SCB49] gi|149356359|gb|EDM44915.1| histidine kinase [unidentified eubacterium SCB49] Length = 359 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 15/227 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIR 54 K + ++ + + I H++ +P+ I ELL + ++ +++ Sbjct: 133 KRQMERADRLGILGEITAGIAHELNTPLANILGFAELLQDDLKDNPTALQDLDKIIKNAI 192 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110 S + F V+ + L +++ + V Sbjct: 193 FSREVVKKLMFFACEMPHEFKKVNIVPSLKSAMALLDASFKKAEVKYVVSIEDEELLLKA 252 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + +I+ NL + A P+ G V+I+ +K + ++ G +I Sbjct: 253 DTIQLTQIIFNLVINAIYFTPKNGLVSITATQTKKHIVLTISDEGTGIDAA-VQEKIFQP 311 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + + + L K Sbjct: 312 FFTTKPTGEGSGLGLSVVHGIVASHGGTITATNNAKKGATFIVKLPK 358 >gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 591 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 67/235 (28%), Gaps = 29/235 (12%) Query: 9 LSSMD-LVAL---LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSM 58 +S + L A + + H++ +P+ I E L + +Q+I + Sbjct: 355 ISDLKRLAATRRDFVANVSHELRTPVSVIQGYAETLLAGALESDPDRARRFIQVIHNHAE 414 Query: 59 SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106 + + ++ + ++ + + Sbjct: 415 RLSALIADLLTLSELESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASR 474 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++L+NL A P GKVT++ +D S+ G + + Sbjct: 475 FVLADKGKLDQVLVNLLDNAIKYTPGNGKVTVTAEDEAEMLKISVTDTGLGIPAKDLP-R 533 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + V + + + + I S L+K Sbjct: 534 IFERFYRVDEARSRDKGGTGLGLSIVKHIVQSHGGMISVKSIPGEGSTFSFTLKK 588 >gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 936 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 64/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + L + + H+I +P+ AI +LL E E + I++ + Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEDVAERQEYIKIVRENND 757 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + G VD + DI + + D + + Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAKEDVELVLDNPLPVCH 817 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + + E F +K G + Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYELKEGELEFYVKDTGIGIEKEQLPHIF 876 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924 >gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 926 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 64/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + L + + H+I +P+ AI +LL E E + I++ + Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEDVAERQEYIKIVRENND 747 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + G VD + DI + + D + + Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAKEDVELVLDNPLPVCH 807 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + + E F +K G + Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYELKEGELEFYVKDTGIGIEKEQLPHIF 866 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914 >gi|306827821|ref|ZP_07461091.1| sensor histidine kinase VicK [Streptococcus pyogenes ATCC 10782] gi|304429991|gb|EFM33030.1| sensor histidine kinase VicK [Streptococcus pyogenes ATCC 10782] Length = 450 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + T L + + R + + + Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434 >gi|303325766|ref|ZP_07356209.1| sensor protein ZraS [Desulfovibrio sp. 3_1_syn3] gi|302863682|gb|EFL86613.1| sensor protein ZraS [Desulfovibrio sp. 3_1_syn3] Length = 601 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 60/237 (25%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRL 55 + S L AL L + + H+I +P+ +I E L + ++ Sbjct: 357 RRLQKQLRQSERLSALGNLAAGVAHEIRNPLSSIKGYATYLTEKLKNDKMAYATGNILIQ 416 Query: 56 SSMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + ++ ++ + + + + Sbjct: 417 ETERLNRVMSDLLSVAKPLDLRLQSVRIENVLEQAVRVISSDAEEKGVAVHLRLPRPGDG 476 Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNL 157 ++ L +R + LLNL + A + GG + + S+ G Sbjct: 477 PQGEVRLDPDRLIQALLNLLVNAVQATEPGGSIEVALESGRAQAADGAFWSISISDTGCG 536 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + + + + + LL Sbjct: 537 MSAQTV-AQLFTPYFTTKASGTGLGLVLTQQIVERHGGEIKVFSQPGKGSTFTILLP 592 >gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 919 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL +++ E +++++ ++ Sbjct: 684 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 741 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + G D + DI + + + + Sbjct: 742 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSDCT 801 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + + + F + G + Sbjct: 802 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 860 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + + + + + + Sbjct: 861 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 908 >gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 929 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL +++ E +++++ ++ Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 751 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + G D + DI + + + + Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSDCT 811 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + + + F + G + Sbjct: 812 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 870 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + + + + + + Sbjct: 871 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918 >gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 589 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 70/237 (29%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +P+ + E + + + E ++I Sbjct: 355 MTEERKL----DKLRDDFIANVSHELRTPVAMLQGYSEAIIDDIAASEEEKKEFAKIIYD 410 Query: 56 SSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + + A ++ ++ + IE+V F + K + E D Sbjct: 411 ETLRIGRLVNELLDLARMEAGHFSFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCETSD 470 Query: 111 LS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL A G V + +++ ++ NG+ + Sbjct: 471 SDLTLEIDADRIEQVLTNLIDNALRHTSSNGYVKVKEEEAPGGVYVHVEDNGSGIPDEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + + R+ + S L K Sbjct: 531 PFVFERFYKADKARTRGKSGTGLGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLPK 587 >gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 888 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 60/230 (26%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S +L + + + H+I +P+ AI L+ D+ Q++ ++ Sbjct: 497 LQSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITESDDAEERKTYYQIVEANN 556 Query: 58 MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + +FG T + + D + Sbjct: 557 ERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFRTPEGVQLVYEPSDESL 616 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ NL A G F + G PEK + Sbjct: 617 RIETDKNRVFQVISNLIGNAVKFTKEGSIKYGYELVDGQIV-FHVTDTGTGI-EPEKVGR 674 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ I + L Sbjct: 675 VFERFAKLNNHAQGTGLGLSICKSIVERLGGQISVSSIVGVGTTFTFTLP 724 >gi|218885805|ref|YP_002435126.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756759|gb|ACL07658.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 545 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDE 48 +A N L + + AL + I H++ +PI + S E L E + + Sbjct: 290 LAVNQEHLLQARKMAALGTFTAGIAHELNNPINNVLLSAEGLREDYGEAIDADGQEMIGD 349 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSW 104 +MQ +S L F R ++ +G ++++ + + + Sbjct: 350 IMQQAERASDIVRNLLDFSRTEHPTFVALHPADVIGATVNLLKNQVMLSGISLAVHVPAD 409 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK 163 R ++ +NL + + PRG +++ F ++ +G E Sbjct: 410 LPMVRGDLRSLQQVFMNLLLNGIQATPRGGAVAVVAMGVPPGHVAFEVRDSGPGI-PEEI 468 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + L H ++ R+ + V + LL Sbjct: 469 REHIFEPFFSTKEVGKGTGLGLAVTYALVHRHEGRIEVHGGEGRGAVFTVLLP 521 >gi|146294958|ref|YP_001185382.1| integral membrane sensor signal transduction histidine kinase [Shewanella putrefaciens CN-32] gi|145566648|gb|ABP77583.1| integral membrane sensor signal transduction histidine kinase [Shewanella putrefaciens CN-32] Length = 707 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLS 56 + + +++ L AL L + I H+I +P I ++EL+ ++ + + I L Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELMRYELGDNADLVKEEIDLV 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTG 106 + +R Y+ + L + V + + + Sbjct: 512 IQQVMRISTIIRSLLQYSRPGEFNAPLEMQSITPIIEETMVLVRHSIKKQEVILITELSA 571 Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++L+NL + A ++ QD ++ G+ Sbjct: 572 TCLVQVNRPQLLQVLINLVINAAHAMDGKGRIWVRTYDWLQQDMPIGVKIEVEDEGSGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I D + D + + + V + L Sbjct: 631 APELLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTVFTIGL 684 >gi|6689353|emb|CAB65452.1| VicK protein [Streptococcus pyogenes] Length = 452 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 213 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 272 Query: 69 LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + T L + + R + + + Sbjct: 273 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 333 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 392 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 393 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 436 >gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] Length = 377 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAI 61 L S+ + S + H++ +P+ I++ +E+ ++ ++ E +QLIR + + I Sbjct: 143 ELDSIK--SEFVSMVSHELRTPLTVINSYIEMFEDGMLGDLTDVQKEKLQLIRSQTDTMI 200 Query: 62 IRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + M + + + ++ Sbjct: 201 QLVNDMLDILRIGSRRLRLKKELSSMEELIRSVIASLSRLAALKEHTITFRCERANTLIE 260 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++L NL A P G++ + + + S++ NG R +K Sbjct: 261 CDPKKIMQVLSNLLTNAIKYTPDRGQIEVVLGGDAENVLVSIRDNGIGIREEDKDRIFEK 320 Query: 170 GNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + R+ E L Sbjct: 321 FFVMSNEKSADIGMGLGLSITKDIVEAHGGRIWFESRFGEGSTFYFTLP 369 >gi|118581551|ref|YP_902801.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118504261|gb|ABL00744.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 1309 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 K + + L A+ L + I HD + + I EL + E M+ + Sbjct: 917 KKLEEQLIQAQKLEAIGTLAAGIAHDFNNILSGIMGYTELSLNKVKEQPKVYRNMEQVLT 976 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEK 108 ++ A +K + + I Q + F+ + + Sbjct: 977 AANRAKDLVKQILTFCRKAHHETKPTSVIPILQEVAKFMRASLPATIELKLRIETESDII 1036 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV----------------QDSKNENIFSLK 152 I S + ++L+NL A ++ G V + + S++ Sbjct: 1037 IADSSQLHQVLVNLCTNAGYAMKDKGGVLEICLADVTVDSRTLPQGSTFAAGHCLELSVR 1096 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +G PE +I D + + + V + + + V Sbjct: 1097 DSGMGI-EPENLPRIFDPYFTTKGPGEGTGLGLAMVHGIIKSHGGDIRVYSELGKGTVFR 1155 Query: 211 ALLE 214 L Sbjct: 1156 IYLP 1159 >gi|15674629|ref|NP_268803.1| two-component sensor histidine kinase [Streptococcus pyogenes M1 GAS] gi|21909909|ref|NP_664177.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS315] gi|56808929|ref|ZP_00366637.1| COG5002: Signal transduction histidine kinase [Streptococcus pyogenes M49 591] gi|71903090|ref|YP_279893.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS6180] gi|71910249|ref|YP_281799.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS5005] gi|94989946|ref|YP_598046.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes MGAS10270] gi|209559000|ref|YP_002285472.1| Two-component sensor histidine kinase [Streptococcus pyogenes NZ131] gi|13621742|gb|AAK33524.1| two-component sensor histidine kinase [Streptococcus pyogenes M1 GAS] gi|21904097|gb|AAM78980.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS315] gi|71802185|gb|AAX71538.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS6180] gi|71853031|gb|AAZ51054.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS5005] gi|94543454|gb|ABF33502.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes MGAS10270] gi|209540201|gb|ACI60777.1| Two-component sensor histidine kinase [Streptococcus pyogenes NZ131] Length = 450 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + T L + + R + + + Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434 >gi|311067401|ref|YP_003972324.1| signal transduction histidine kinase with CheB and CheR activity [Bacillus atrophaeus 1942] gi|310867918|gb|ADP31393.1| signal transduction histidine kinase with CheB and CheR activity [Bacillus atrophaeus 1942] Length = 1182 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51 ++ + S L A+ L + I H+I +P+ ++ L+L+ D + Sbjct: 955 KQSEKMLMKSEMLSAIGQLAAGIAHEIRNPLTSLKGFLQLMIQSKKYQKDYAEVMMSEFV 1014 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110 + ++ + + F D + + I + V ++ + Sbjct: 1015 RLESIINEFLVLSRSKSVQFETIQINDIVEDVSLILESQAMLKGVRVIKNLNDKLPDIKG 1074 Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + E ++ LN+ A S+ + + I + + G E ++ + Sbjct: 1075 VPNELKQVFLNVLKNAIESMEQIEGDIHIHTVYQNGYIQLTFEDQGKGI-SKEMMERLGE 1133 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K + E I++ ++ L Sbjct: 1134 PFYTTKEKGTGLGLMVSFKIIESHKGTIEFESIENQGTKVTIKLP 1178 >gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 598 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 26/231 (11%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 + L + S + H++ +P+ AI E L ++ I + +IR + Sbjct: 364 EAEKLEQMRKDFVSDVSHELRTPLTAIRGYNEALSDGTVEDPEIRQKYHNIIREETQRLE 423 Query: 62 IRLKFMRLAFG--------YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112 + + +D + ++ V++ + Sbjct: 424 RLIHDLLDLSRLQSGKISLELEPLDVGAVIRSTVEKLEPQINIKGIAVELDIPQNIPYIM 483 Query: 113 ---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK---FT 165 ++L+ L A GGK+ +SV D + ++ G + + Sbjct: 484 GNEDRLVQLLIILLDNAVRYTDAGGKIFVSVGDVGLKGVEIAITDTGKGIPKEDIPFIWE 543 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + T + + + + E + Sbjct: 544 RFYKVDKSRTRTGAGTGLGLAIARQIVELHHGTIEVESELGRGTTFKIVFP 594 >gi|322419596|ref|YP_004198819.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125983|gb|ADW13543.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 407 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + LS + L L + + + H+I +P+ I +++ E + Sbjct: 179 EERHQEELSRRETLAKLGEMGAVLAHEIRNPLAGIKGFAQVIAARPTEARNASFAQSIVT 238 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEK 108 A+ + Y + + +++E ++ V Sbjct: 239 EAVRLENLVNDLLAYAAIEPAAGETFPLAELLEQTVSLLEPEAASSGVGITTDCRQELVI 298 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +LNL A ++P GG++ ++ + E + + + G+ E + Sbjct: 299 YGNRDRIEQAMLNLGRNALQAMPEGGELRLTATMKEGEAVITFEDTGHGI-AEEHNALVF 357 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + ++ L Sbjct: 358 EPFFTTRARGTGLGLALCKKIVEGHGGSITLKSELGVGTTVTVTLP 403 >gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] Length = 646 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 16/236 (6%), Positives = 69/236 (29%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 +N + L + + H++ +P+ +I ++ + +++ + +++ Sbjct: 408 ERNRAEEADQLKSAFL--ATMSHELRTPLNSIIGFTGIILQGLAGPLNKEQEKQLGMVQD 465 Query: 56 SSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTG 106 S+ + + + V+ + + + + V + Sbjct: 466 SARHLLALINDVLDISKIEAGELNISREPVNIQKSIESVCTTLRKSAEDKGLSLHVDISP 525 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKF 164 + + ++ +I L + + ++ + + V+ + S+ G E+ Sbjct: 526 DTGFIIGDQRRIEQILINLINNAIKFTERGYVCVKSSLREKNVCISVSDTGIGI-SEEEM 584 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + ++ + +L Sbjct: 585 KKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVTSEPGKGSEFTVILP 640 >gi|294500794|ref|YP_003564494.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|295706139|ref|YP_003599214.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294350731|gb|ADE71060.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294803798|gb|ADF40864.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 466 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 68/220 (30%), Gaps = 13/220 (5%) Query: 6 CFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57 S L V+ L + + H+I +P+ AI ++LL E + + +L R+ S Sbjct: 240 EMASKSEKLTMVSKLAAGVAHEIRNPMTAIKGFIQLLKASKQYNEEYNDIMLEELNRVES 299 Query: 58 MSAIIRLK---FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + ++ + + + ++ ++S Sbjct: 300 IIQEFLTLAKPKIENSYHPKSLNQIIRHVTLLLDTHANYKNCRIINEISDEITIFCEENA 359 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ +NL A S+ +G + ++ + ++ G ++ + + Sbjct: 360 LKQVFINLIQNALESMSKGTVKVTVEKRNEYG-MVIIEDEGCGIDEQSL-ARLGEPFYST 417 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + L Sbjct: 418 KQTGTGLGLMISYRIIEQHQGHISFASKVGVGTKVEIALP 457 >gi|153807836|ref|ZP_01960504.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185] gi|149129445|gb|EDM20659.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185] Length = 1348 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 61/235 (25%), Gaps = 20/235 (8%) Query: 1 MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + NL ++ L S I H+ +P+ I + E+L + I + L Sbjct: 798 LERKEKENLEKINQAKLQFFSNISHEFRTPLTLIISQSEVLMKSRISSISLSNKILDIYR 857 Query: 60 AIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + ++ + E Q S Sbjct: 858 NSQLLMNLISELLDFRKLEQGQMQLKVSKQDIVSFVNEIFLSFKEYASNKQIEYQFSSNE 917 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160 K+ + ++ F A + +V + +++ + G Sbjct: 918 PKVYCWFDAKQLQKVFFNLLSNAFKYTKKNDRVIVQIENESQIIKIKVIDTGIGIDREYL 977 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + S I + + + + + L+K Sbjct: 978 EHIFERFYQVSSITRTPSTGIGLALSKAIVEMHHGIIEVDSTPGNGSTFIVTLQK 1032 >gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 620 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRL 55 + L +D L + L + + H+I +P+ +I +EL+ + + + + R Sbjct: 381 EEKNTELKKLDDLKSDLIAIVSHEIRTPLTSIKGYVELVLDEAVGKINNSQRKCLTTARE 440 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTG 106 + + + M + + + + + Sbjct: 441 NVVRLNRLISSMLDLSKLAKGELEMHREEINIKKTIDEVIDDLKPISAEKNINITLEIDD 500 Query: 107 EKIDLSRERA-KILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPE-- 162 I+ ++R ++ +NL A P + I ++ + ++K NG + Sbjct: 501 IIINADKDRMKQVFINLIENAIKFSPENEIIEIKGKEEYHGDVSITVKDNGEGIPKDKLE 560 Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + ++ + + + + + +L K Sbjct: 561 KVFDRFYQADLSPKRKGKGTGLGLAVCKSIIQAHGGSIWVKSEIGKGCTFYIVLPK 616 >gi|229154352|ref|ZP_04282472.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342] gi|228629176|gb|EEK85883.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342] Length = 463 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 58/219 (26%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGE----KIDLSRERAKILL 120 ++ + L I + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPSTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454 >gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] Length = 808 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYESSDESLMI 553 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 611 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659 >gi|89098586|ref|ZP_01171469.1| sensory transduction histidine kinase; sporulation kinase A [Bacillus sp. NRRL B-14911] gi|89086831|gb|EAR65949.1| sensory transduction histidine kinase; sporulation kinase A [Bacillus sp. NRRL B-14911] Length = 469 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--LIRLSSM 58 + S L + + + H+I +P+ I ++L + + +I + Sbjct: 244 ETNELLRRSEKLAVVGQMAAAVAHEIRNPLTPIKGFMQLFSDGRDFNPAFSSIIINEINR 303 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 I +F+ LA ++ V+ L I V++ + T E + Sbjct: 304 IDNIITEFLALAKPHSTKVEVLDLNDVIRHVVDLMMPQALMNNKELTFEPGNGPYPLLGD 363 Query: 116 ----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ +N+ A ++ G IS + E +K +G E+ + + Sbjct: 364 PNSLKQLFINIIQNALDAIEEKGSSIISTVKADGELCAIIKDSGCGI-PAERLANLGEPF 422 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A ++ R+ E + + Sbjct: 423 YSTKEKGTGLGLMTSYKIADDHHGRVKVESDEGKGTTVRVYFP 465 >gi|307718837|ref|YP_003874369.1| hypothetical protein STHERM_c11530 [Spirochaeta thermophila DSM 6192] gi|306532562|gb|ADN02096.1| hypothetical protein STHERM_c11530 [Spirochaeta thermophila DSM 6192] Length = 632 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 69/242 (28%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L S + A+ L + HD + + I +L+ + D ++ Sbjct: 249 LRERERQLLQSQKMEAVGRLAGGVAHDFNNLLTVIMGYSKLILQGLPADSPLRSDVQEIQ 308 Query: 59 S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGE 107 L F R VD L ++E+++ + D + ++ + Sbjct: 309 RATLRSSHLIRQLLLFSRHQMAQPEVVDLNELLREMERLLRRVLREDIALTLSCLAGSAR 368 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLK 152 + ++++NL + A ++P GG +TI ++ + + Sbjct: 369 VYVDPAQFEQVVVNLAVNARDAMPDGGMLTIQTRNEVLREERKGALVSVPPGEYVVLDVS 428 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ + + V + + S Sbjct: 429 DTGSGIPPAILPRIFEPFFTTREDEGTGLGLSTVYAVITGAGGFVDVSSTPGRGTTFSLY 488 Query: 213 LE 214 L Sbjct: 489 LP 490 >gi|89095093|ref|ZP_01168020.1| C4-dicarboxylate transport sensor protein, putative [Oceanospirillum sp. MED92] gi|89080654|gb|EAR59899.1| C4-dicarboxylate transport sensor protein, putative [Oceanospirillum sp. MED92] Length = 681 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 78/232 (33%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM---- 50 + + + + + A+ + + + H++ P+ AI N + ++L + + E + Sbjct: 448 LQEAQDELVQAGKMAAIGRMSTAVVHELNQPLTAIRNYVAICRQMLQQPEMLSESLTEVD 507 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109 +L + + F V + + + + + FI +V + + Sbjct: 508 ELTQRMAQITSQLKTFAYRKPEQMEKVSVQMAVNNALHLFRQRFIDDGFQVDLDLPEPTV 567 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKF 164 + + ++LLNL A ++ I++Q ++ ++ +G + Sbjct: 568 YVLGDSARLEQVLLNLIKNALDAMQGFDHKQIAIQVDAVDDKVRVTVVDSGPGIDM-DLL 626 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V S D + V + + + E +L Sbjct: 627 PDLFEPFVTSKSIGDGLGLGLSIVRSIVRDLNGEISAENQTGGGACFRVILP 678 >gi|332522355|ref|ZP_08398607.1| PAS domain S-box protein [Streptococcus porcinus str. Jelinkova 176] gi|332313619|gb|EGJ26604.1| PAS domain S-box protein [Streptococcus porcinus str. Jelinkova 176] Length = 452 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115 + T + I + + + + I L + Sbjct: 271 IDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVAGKTYEIIRDYPIKSIWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+ + ++ + ++ I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKIRVKMKTTDSQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSDYGKGSTFTIVLP 434 >gi|218132753|ref|ZP_03461557.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC 43243] gi|217992479|gb|EEC58482.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC 43243] Length = 383 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 72/239 (30%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + N + + L I HD+ +P+ AI +E LLD V E + + + Sbjct: 130 LKNNAEEKIKAESEEKELIRNISHDLKTPLTAIKGYVEGLLDGVADTPEKREKYLKTIYN 189 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------- 102 + + +D ++ + D ++ Sbjct: 190 RASDMDKLIDELTMYSRIDMNRVPYTFTKIDINHYMEDCCEEIGLELETKGISMEYHNFS 249 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 + + + +++ N+ + + + I + + + + ++ NG Sbjct: 250 NEEQYVMIDIEQMKRVINNIISNSVKYMSDRKGMIRIELFNDGDYALIRIEDNGKGISPE 309 Query: 162 E---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + E+ + E + V++ L+K Sbjct: 310 DLKHVFERFFRADSSRNSKQGGSGIGLAIVKKVIEEHGGMIWAESKEGIGTVMNIRLKK 368 >gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 375 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 54/239 (22%), Gaps = 29/239 (12%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + L + L S + H++ +P+ I E L + + Sbjct: 131 QEKNAELERANQAKDRFLAS-MSHELRTPLNGIIGFAEFLADGKPGPVNGKQKEYLEDIL 189 Query: 61 IIRLKFMRLAFGYTGSVDSLI---------------GLGDIEQVIEDFIAVDKRVQVSWT 105 + L V V V V Sbjct: 190 NGGRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRPLADNKRIGVHVEIA 249 Query: 106 GEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFP 161 ++ + ++L NL A GG+V + V+ + S++ G + Sbjct: 250 PGFSPITHDEQRFKQVLYNLLSNAIKFTDDGGQVEVKVEQRGADRFCLSVRDTGIGIKPE 309 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + E S L Sbjct: 310 DI-QRLFVEFEQLETGHARRFGGTGLGLALTRKIVELKGGTISVESAVGRGSTFSVTLP 367 >gi|153003749|ref|YP_001378074.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027322|gb|ABS25090.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 453 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 56/236 (23%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+ + + L + + H++ +P+ I +LEL E ++ L + + Sbjct: 211 MAERLERLVRGEQ---ELLANVSHELRTPLARIRVALELAAEGDVDRARRFLAEIGTDLD 267 Query: 61 --IIRLKFMRL-------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ + VD + L + + + Sbjct: 268 ELDRLVEDVLAAARLDLAAGGGPAWPVTRARVDLDVVLAEAAARFREAHPARTLDLLLPE 327 Query: 106 GEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ NL A V ++ ++ G + Sbjct: 328 SLPAVDGDAALLRRLVANLLDNAAKYSEPPAPVALAAGARDGGIELEVRDQGIGIDPDDL 387 Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + E +L Sbjct: 388 SRVFTPFFRTDRSRARGTGGVGMGLALARRIAEAHGGTITVESTPGRGTTFRVVLP 443 >gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 599 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 25/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMS 59 ++ + + + + H++ +P+ +I ++L++ ++++ ++ S Sbjct: 359 QSKVLAEQANRTKSEFLANMSHELRTPLNSIIGYSQILNQNPSGNLDEKELKYSHNILNS 418 Query: 60 AIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104 V+ + DI +++ + + S Sbjct: 419 GEHLLELINSILDISKVEAGKMEYEPERVNLPETIDDIIGLVKPLAMKKSIDIRFINNSA 478 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +IL NL A P G+V I + S+ G EK Sbjct: 479 IAKVWVDRVKFKQILHNLLSNAIKFTPEKGEVKIYLSTDDGTAQISVADTGIGI-PAEKI 537 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I D + + V + + E + L Sbjct: 538 EDIFDPFKQVNSSSSREYEGTGLGLALVKKYVEMHDGEIWVESEVGAGSTFTFTL 592 >gi|187933989|ref|YP_001885394.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187722142|gb|ACD23363.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 562 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 20/223 (8%), Positives = 64/223 (28%), Gaps = 17/223 (7%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64 + ++L + + H++ +P+ +I E L ++ ++ + +I S + Sbjct: 338 IKKLELMRTQFVANVSHELKTPLTSIKGFAETLRYVEDNETREKFLNIIDKESERLSRLI 397 Query: 65 K----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + ++ + + + A++ + + Sbjct: 398 NDILVLSSIESNISTQNDEFLPKSIIEDVINMVRKLANNKAINLEFYDDNQELILGDKDK 457 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 ++ LNL A G V + + + NG + F + + Sbjct: 458 FYQLTLNLVENAIKYSENGSNVKVISYSKQGNYYLEISDNGLGIPKEDLPRIFERFYRVD 517 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + I + ++ Sbjct: 518 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSILGEGSIFKVRIK 560 >gi|154248554|ref|YP_001419512.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] gi|154162639|gb|ABS69855.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] Length = 857 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 69/244 (28%), Gaps = 31/244 (12%) Query: 2 AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 K + S L A+ L + HD + + AI +LL + + I+ Sbjct: 471 QKQLEAQFAESQKLQAVGHLAGGVAHDFNNILTAILGYCDLLLVKHRQSDPSFPDIMQIK 530 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 ++ A + + + +I L D+ + +++ + Sbjct: 531 QNANRAAGLVGQLLAFSRRQTLLPQVIELTDVISDAAALLRRLIGERITLEVQHARDLWP 590 Query: 114 ------ERAKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKI 153 + ++++NL + A ++P G + + + Sbjct: 591 VKVDKNQFEQVIINLVVNARDAMPDGGTLTVRTANVPAAASTAYGQRLPEGDYVLVEVAD 650 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G PE +I + + + V + + +L E Sbjct: 651 TGTGI-PPEVMGKIFEPFFSTKEVGKGTGLGLSTVYGIVEQTGGTILAESTLGEGTTFRV 709 Query: 212 LLEK 215 L + Sbjct: 710 FLPR 713 >gi|228948417|ref|ZP_04110700.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811404|gb|EEM57742.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 484 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 467 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 71/225 (31%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK- 65 ++ + + + H++ +P+ +I E L +E +++I + + Sbjct: 232 QEMRSEFVANVSHELRTPLTSIRGFAETLLDGALEEPDTARRFLEIINSETERLSRLIDE 291 Query: 66 -----FMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116 + + + + + + ++++ + + + Sbjct: 292 LLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNLAIKINLPEDLPVVQGDPDM 351 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171 ++LLNL A GG+V+IS +++E +K NG F + + Sbjct: 352 LSQVLLNLIENAVVYTQAGGEVSISAAATQDEMKVDVKDNGIGIPPESLSRVFERFYRVD 411 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + E S ++ Sbjct: 412 KARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTFSFVIP 456 >gi|134298201|ref|YP_001111697.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134050901|gb|ABO48872.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 480 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 57/211 (27%), Gaps = 19/211 (9%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 H++ +P+ +IH LE+L ++ + S + + L + Sbjct: 269 SHELRTPLTSIHGFLEVLLRGAANQPDQLNKALKSMYGESERMNKLVHDLLLLTKLDHAP 328 Query: 78 DSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 + Q+ ++ V E + + +++LNLF A Sbjct: 329 RLEVKEGFLDTVIQEMEPQLCILAGNRRLQLMVDSNIECKFDTDKMKQVILNLFHNAVQH 388 Query: 130 LPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQF 183 + + S++ NG + F + + + Sbjct: 389 TDPEKGEIKISLYKRTDGVQLSVEDNGPGIKDFHLPKVFDRFYRIDASRTRRHGGAGLGL 448 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E ++ L Sbjct: 449 AITKAIIDAHGGTINVESLEGTGSTFHIWLP 479 >gi|147669744|ref|YP_001214562.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] gi|146270692|gb|ABQ17684.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] Length = 394 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K++ S L ++ L + + H+I SP+ +I E L +E + I Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKID 110 A+ F R + ++ + + + V++ Sbjct: 187 EALRAAKVVNNLRTFARSYEQEKKLCGLNDIIRKSIELREYELVIQNIVVELDLAENLPA 246 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164 + ++L+N+ + A ++ + +D N ++ NG PE Sbjct: 247 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTEDMGNFIRMIIEDNGPGI-SPEIA 305 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + D + + E+ ++ E L Sbjct: 306 ERVFDPFFTTKEDSWGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 357 >gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 810 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 63/226 (27%), Gaps = 17/226 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +VD +I + + + + + + Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKVGKGVELILEEPFPECY 697 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + +++ N A +G Q + F ++ G ++ + Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVPHQKIKFYVRDTGMGIPEEKQKSVF 757 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + + + Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGVGSCFWFT 803 >gi|289432105|ref|YP_003461978.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] gi|288945825|gb|ADC73522.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] Length = 1062 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + M V L S + H+I +P+ I ELL +E+ + + I+ A Sbjct: 818 MEQQLIMT-DRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDIQTIHREA 876 Query: 61 II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112 + L F R + D + + + ++ + ++ + + + Sbjct: 877 LRAAEIVRNLLTFARQHTPTREASDINLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVM 936 Query: 113 RERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +I L + + L ++TI I S+ NG PE +I Sbjct: 937 LDFFQIQQVLINIIINAEFFLRLKDHPQITIKTSQHNGYVIISISDNGPGI-SPENMKRI 995 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + E+ ++ E + L Sbjct: 996 FDPFFTTKEVGKGTGLGLSICHGIIEEHHGKISVESTLGNGATFRIELP 1044 >gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC 43184] gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC 43184] Length = 561 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K NL A L + + H+I +P+ AI EL+ ++E + Sbjct: 322 RKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMAFADSDEERREYY 381 Query: 54 RLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + ++ ++ VD + I I+ + ++ + Sbjct: 382 EIIKTNNLLLMQLINDILDLSKIEADAIRISYEPVDINGLMDTIFASIKLRMPEGVQLFL 441 Query: 103 SWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +++ NL A + +G F +K G Sbjct: 442 EKGSCTCCFGADSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKCLEFYVKDTGTGIA 501 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + + E S +L Sbjct: 502 KDKLESLFTRFVKVNDYVEGIGLGLAICQGLVTKMGGSMHVESELGVGSTFSFVLP 557 >gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 919 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL +++ E +++++ ++ Sbjct: 684 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 741 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + G D + DI + + + + Sbjct: 742 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGIELVFDPHPSDCT 801 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + + + F + G + Sbjct: 802 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 860 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + + + + + + Sbjct: 861 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGARFWFTIP 908 >gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 810 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 19/227 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGE 107 + +VD +I + + ++ + Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKVSKGVELIFEEPLPECY 697 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A +G Q S + F ++ G EK I Sbjct: 698 LYTDKNRFTQVISNFINNALKFTQQGCITLGYKQVSHQKIKFYVRDTGMGI-PEEKQKSI 756 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + V + + + + + + + + Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGVGSCFWFT 803 >gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 862 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 626 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEITQFIGTINK 685 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 686 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 745 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 746 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 805 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 806 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 858 >gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] gi|133740502|emb|CAL63553.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 678 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 63/234 (26%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + K + + L A+ + + + H+I +P+ + +L++L + ++L+ Sbjct: 443 LVKAQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAATPVQGELRLM 502 Query: 54 RLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + ++ + + + + ++ Sbjct: 503 DQQIHRINTIVTKLLQFASPGEFAGYVEAIAVDEVVVDTLVLVRHLLNQSNIEVVHNRHA 562 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLAR 159 T E ++L+NLF A ++ ++ G + Sbjct: 563 TLAVHINRGELQQVLINLFTNAVHAMKNGGRLTIESRDWIDDAGARGVTINVIDTGAGIK 622 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + L + + + + L Sbjct: 623 KEDQARIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVKSEEGVGTEFTVRL 676 >gi|313681084|ref|YP_004058823.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] gi|313153799|gb|ADR37650.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] Length = 419 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 23/200 (11%), Positives = 58/200 (29%), Gaps = 4/200 (2%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + + + H++ +P+ + LE L + + E + ++ + + Sbjct: 216 VFLAEVSHELRTPLTVLAGYLERLRKRPGDTEALAGAERTARHLTRLVGDLLALARGEAE 275 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILLNLFMVAHASLPRGG 134 + D+ ++ A V + ++L NL A + R Sbjct: 276 RTVNPHIVDLAELASGVTAGFPGVGLELRAAPEVLGDPDRLIQLLRNLVANAVRAAGRPE 335 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194 V ++V + + +G PE + + + +A ++ Sbjct: 336 GVRVTVGEDDGRAWVEVADDGPGI-DPEVLPHLFERFARGPEGGTGLGLAIAKQIAEAHE 394 Query: 195 IRLLPEIIDDHNVVLSALLE 214 + H V L Sbjct: 395 GTITVRSRPGH-TVFRVELP 413 >gi|188582204|ref|YP_001925649.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179345702|gb|ACB81114.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 571 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 73/241 (30%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQLIR- 54 + + + + + +L L + I H+I +P+ I ++E L E + R Sbjct: 327 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLSELPPPEAPEGQRA 386 Query: 55 ----------------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + KF RL G G V+ + + +I+ + Sbjct: 387 LTKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 446 Query: 99 RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V ++G ++++N+ A ++ G +T++ ++ + G Sbjct: 447 HVHRDFSGRPEISCTPALLNQVVMNILGNAADAVHGEGTITVATYSDAETDVIRISDTGP 506 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + + L E + Sbjct: 507 GI-PEDLREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLTVETAPGGGASFVIGIP 565 Query: 215 K 215 + Sbjct: 566 R 566 >gi|311029534|ref|ZP_07707624.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 422 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 21/224 (9%), Positives = 62/224 (27%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 +N ++ +V L + I H+I +P+ A+ ++LL ED+ + + Sbjct: 193 ENQLRKSDTLTVVGELAAGIAHEIRNPMTALKGFIQLLQNSMGEDQYAMYFDVITSELKR 252 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKIDLSRE 114 + + +++ + + S D+ E Sbjct: 253 IESIITEFLVLAKPQAISYQRKNATVIMKETLDLLSAQASLENVQFITSIEEGLPDIYCE 312 Query: 115 RAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + ++ K + + + S++ G +K ++ + Sbjct: 313 PNQLKQVFINILKNAIEVMPKGGTVSVALEKIEGEQVLISIRDEGTGI-PEDKLKKLGEP 371 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ + L Sbjct: 372 FYTTKERGTGLGLMVSYKIVEEHNGTIEVSSKLGKGTTFHIKLP 415 >gi|91204021|emb|CAJ71674.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 906 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + K L + L L + S I H++ + + I +++LL + + Sbjct: 528 LKKMETELLHAQKLQGLGVMASGIAHELNNILAVIDANIQLLIKESKGRIKLLQALSIIR 587 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG------------LGDIEQVIEDFIAVDK 98 + + +F + + + L + Sbjct: 588 EQCIDGAEVVRRMKEFTSTSVDPRKMIQVNMNSLVNNIIVFTKPLWKNIAEGKGLKYQLN 647 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + S E +++LN+F+ A ++P GG +++S + + S+ G Sbjct: 648 TDCLKNVPNIKGNSPELREVVLNIFLNALDAMPEGGTISLSTWEKEGYVFLSIADTGTGM 707 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + V + + + + + Sbjct: 708 -TDEVKAKIFDPFFTTKKKGMGLGMSVVYGIVKRHGGTIEVQSQPGKGSTFTLKFP 762 >gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] Length = 465 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 60/217 (27%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ +I E L + ++++ S + + + Sbjct: 246 FVANVSHELRTPVTSIKGFSETLLDGAYKDTETLLSFLEIMHTESNRLEMLINDLLDLSK 305 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNL 122 + + E + ++++ + + ++++NL Sbjct: 306 VEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKLEIQPVTVLGDANRLIQVMMNL 365 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTID 177 + A ++TI + N I ++ G E F + Sbjct: 366 LINAVTYSSNYTEITIRLFRKDNRAIIQVEDQGIGIESSEIGRLFERFYRVDRARSRNSG 425 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + + + L Sbjct: 426 GTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLP 462 >gi|313890248|ref|ZP_07823882.1| PAS domain S-box protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121353|gb|EFR44458.1| PAS domain S-box protein [Streptococcus pseudoporcinus SPIN 20026] Length = 452 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115 + T + I + + + + I L + Sbjct: 271 IDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVAGKTYEIIRDYPIKSIWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+ + ++ ++++ I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKIRVKMKTTESQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSDYGKGSTFTIVLP 434 >gi|169830644|ref|YP_001716626.1| nitrogen-specific signal transduction histidine kinase NtrB [Candidatus Desulforudis audaxviator MP104C] gi|169637488|gb|ACA58994.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Desulforudis audaxviator MP104C] Length = 519 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 68/216 (31%), Gaps = 17/216 (7%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLSSMSAII 62 L ++ + + + H+I +P+ I ++LL E V+ I + Sbjct: 301 LASVGEMAAGVAHEIRNPLTVIRGYVQLLSEKKGEGMDALKPYYQTVLDEIDRLTQIIHD 360 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRER---AKI 118 L R ++ L + + + + D +++ ++++ + ++ Sbjct: 361 FLNLARPQAVSKVPLNLNEVLTGVRHLLETEALRRDANLEIELDSSPVEINGDPAGLTQV 420 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 + NL A + RGGKV + + + NG + ++ + Sbjct: 421 VFNLVGNAFEAAGRGGKVRVRTYQRHHRAFLEVVDNGPGI-PDDLREKVFAPFFSTRAMG 479 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ L + Sbjct: 480 TGLGLAISRRVALDHGGTLTCRSEPGD-TRFILQIP 514 >gi|218235769|ref|YP_002367954.1| sensor histidine kinase [Bacillus cereus B4264] gi|218163726|gb|ACK63718.1| sensor histidine kinase [Bacillus cereus B4264] Length = 458 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + G + V++ + I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEE-MER 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 458 >gi|134300812|ref|YP_001114308.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134053512|gb|ABO51483.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 487 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + + I + + S + H+I +P+ + E + + + + I Sbjct: 245 LQEKITQLEAQEQIRREFVSNVAHEIKTPLAIMQGFTETMLDGLVKDEKERETYLGNILD 304 Query: 56 SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTG 106 + + D + + + ++ + ++++ Sbjct: 305 EINRLKRLVNEILDLKRMEEGHFDFDKEPCDLKVLIYRVLGKLNQLVEQKGVNLKLNLEK 364 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 S ++L+NL A P GGK+ I V N+ ++ G + Sbjct: 365 RLLPVTCNSDRMERVLINLIDNAVRHTPEGGKIFIYVTSKANQVHIRIRDTGVGISPEDL 424 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V + + ++ E + + +L Sbjct: 425 PMIWERFYKADKSRSRTQGGTGLGLAIVKKIVEAHGGQIYVESKLNEGTSFNIVLP 480 >gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 477 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 71/226 (31%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I +E L + ++ + +I + ++ Sbjct: 249 EQMRTEFVANVSHELRTPLTSIKGFVETLLDGALDDTKVARRFLSIINEETQRLQRLIED 308 Query: 67 MRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + ++ + I + +V V + LS + Sbjct: 309 LLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQVDVETNLPLLPLSPDN 368 Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L+NL A P GG+V++ + I ++ G E +I + Sbjct: 369 LKQVLVNLTENAIKYTPEGGQVSVRATRGCDSVILEVQDTGIGI-PEESLPRIFERFYRV 427 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + + Sbjct: 428 DKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTFP 473 >gi|270307985|ref|YP_003330043.1| sensor histidine kinase [Dehalococcoides sp. VS] gi|270153877|gb|ACZ61715.1| sensor histidine kinase [Dehalococcoides sp. VS] Length = 852 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 69/226 (30%), Gaps = 17/226 (7%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62 + + L ++ + + + H++ +P+ ++ EL+ E + +++M +++ S A Sbjct: 622 AQLMITDRLASVGEMAAGLAHELNNPLTSVLGFSELIQEKDLPEDLMHDVQIISQEAQRA 681 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-WTGEKIDLSRER 115 L F R VD + + + V+ V+ ++ + Sbjct: 682 ADIIRNLLTFARRHEQARDWVDMNQVIKKVLAICNYGQKVNNIQMVTNLDPNLPEIKADY 741 Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ L + + + I+ N S++ +G Sbjct: 742 FQMQQVLLNIVINAEYFITQAHGEGTIVITSCRLDNSIRISIEDDGPGMSENVLKHIFDP 801 Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +L E + L Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIELP 847 >gi|189426645|ref|YP_001953822.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422904|gb|ACD97302.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 399 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 + + + L AL L + + H+I +P+ +I +LL + ++++ Sbjct: 166 LHRAQSEIAQTEKLAALGYLAAGMAHEIRNPLNSISLFTQLLGQGVEEVEIGDYLGKILK 225 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGE 107 + + + + + D + I + Sbjct: 226 EVDRIDGIIRKLVDAANRSRLVVDDIRLDQVVKDALDIFSPQIDARQIQVSFTCAEPVPP 285 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +I+ NL M A LP+GG+++I + + + NG + I Sbjct: 286 IKADRTELEQIVTNLLMNAVEELPQGGELSIRIDCPEGLIAIRVADNGGGI-ASDHLESI 344 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I +A + E + + + Sbjct: 345 FKPFFSTKSRGTGIGLPVARRIARLYHGDVTVEQTSESGTTFLVTIPR 392 >gi|95929449|ref|ZP_01312192.1| response regulator receiver sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134565|gb|EAT16221.1| response regulator receiver sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 397 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 74/227 (32%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 + + + + L + L + + H+I +P+ +I +LL + ++++ Sbjct: 160 LEQAHNEIVQAEKLATVGHLSAGMAHEIRNPLNSIGLFAQLLATGIDPGDELAEYPEKIL 219 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGE 107 + I + L + T V + D+ + + + + + Sbjct: 220 KEIDRIDAILLKLLAASKQHKVDTQPVSLDEVIHDVADLFRPQFSQQGVDLDLYLQQVPK 279 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + E +I NLF+ A ++ GG +++ ++ + + NG+ E +++ Sbjct: 280 LVGDQDEFVQIFTNLFVNALQAMADGGLLSVEMEQQGDRIYVEVSDNGSGI-AQENLSKV 338 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V+ + + I Sbjct: 339 FDPFFTTKSKGTGFGLSVVLRIVKNYHGSIRVSSILGKGTSFYLEFP 385 >gi|301061361|ref|ZP_07202141.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300444538|gb|EFK08523.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 327 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 1 MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIE 46 M + + + S + ++ + + + H+I +P+ + ELL E Sbjct: 75 MRRELEEAHLQLVQSDKIASVGRMAAGVAHEINNPLAGVLIYAELLQENLKDRPEQLADV 134 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105 E+++ L+F R + G S + + + + D + Sbjct: 135 QEIIKQTLRCKKIVSELLEFSRQSIGKESSFELEKLIDSCLSLVTKQATFQDINIVKEID 194 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARF 160 + + ++ + + + K+ + + G Sbjct: 195 PHIPAMVGDMGQLQQVFINLFINASDAMEGFGEIKIKALYRPEKSSVVIGVSDQGPGI-P 253 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + + + + E L Sbjct: 254 EEMQDKIFDIFYTTKPVGKGTGLGLSISQNIINLHGGSIRFECPPTGGTTFIIELP 309 >gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23] gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23] Length = 500 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ + + + + V K + Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPEIEIKAILPDD 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ N A + ++ + ++ G Sbjct: 380 DIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L Sbjct: 440 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLP 492 >gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 500 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ + + + + V K + Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPEIEIKAILPDD 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ N A + ++ + ++ G Sbjct: 380 DIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L Sbjct: 440 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLP 492 >gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 568 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 73/230 (31%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII 62 L + + + H++ +PI I + +E L + + +++I + Sbjct: 338 EQHKLDTMRKEFVANVSHELRTPIATIKSYVETLLYSDVDAEYSKKFLKIIDSETDRMTR 397 Query: 63 RLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + + + I + I ++ + ++++ V + Sbjct: 398 LVKDLLLLSKMDSEDNNLKFEQKNLNDIVVEAINRLSIEAQKKNQKLIVDLQETPRYVYI 457 Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++++NL A P G + I + ++ ++ NG + +I + Sbjct: 458 DRDKMEQVIVNLVTNAIKYTPENGMIKIMTEYDESFASLIVEDNGIGIPKEDLP-RIFER 516 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K + E ++ L Sbjct: 517 FYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566 >gi|226314264|ref|YP_002774160.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226097214|dbj|BAH45656.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 485 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59 + +I L + L S I HD+ +PI I +E + E + E + Sbjct: 238 LYDSIHLQLQYEENRKQLISSISHDLKTPITGIKACVEAVQEGIADTEAKREKYMKMIAI 297 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 ++ + +D E+V ++ +S Sbjct: 298 KSEQMDRLIDELFLFSRLDLNKLPFHFEEVDMRAYMARFAEELRLDPRMHGVSIRYDEHN 357 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLAR-- 159 ++L+N+ + L + K+ + + + + ++ NG Sbjct: 358 ESPIPVMADQEKLHRVLMNIVDNSLKYLNKDEKLIRLEVEKASGDVLVAISDNGTGIEKE 417 Query: 160 -FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + V + + R+ E + L Sbjct: 418 AMPHIFDRFYRADPARNSAMGGSGLGLAIVKQIVEGHGGRVWVESESGRGTRICFTLP 475 >gi|189424803|ref|YP_001951980.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421062|gb|ACD95460.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 376 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 28/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 A+ + ++ + +L + HD + + I +L E +Q+I ++ Sbjct: 126 AEERLRHSQKLEAIGILAGGVAHDFNNILTVIRGYSTMLLMQTPPEDPNHESLQMIVDAA 185 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 A + + + S L + E F+ ++ + Sbjct: 186 KRATSLTQSLLTFSRKQEATPSKAELCTLVSSFEKFLRRIIGDNITLNFVCDQNTSHASV 245 Query: 115 ----RAKILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGN 156 ++L+NL + A ++P GG++TI+ ++ G Sbjct: 246 DRSMIEQMLMNLAINARDAMPDGGQLTIATAHILLDSKSASALELSPGTYIHLTVSDTGC 305 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + V + ++ + E S L Sbjct: 306 GI-PRELLPKIFDPFFTTKEVGKGSGLGLSMVYGIVKQHCGTISVESAPGSGTTFSIYLP 364 >gi|218898190|ref|YP_002446601.1| sporulation kinase [Bacillus cereus G9842] gi|218540722|gb|ACK93116.1| sporulation kinase [Bacillus cereus G9842] Length = 801 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGVGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] Length = 595 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A + S+ + + I H++ +P+ +IH EL+++ + + L +A Sbjct: 352 LAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQRLEQPSYREAAGLIRSAA 411 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104 + + + + + + + ++ + Sbjct: 412 EHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLFAISAVQKGLTLEMHIAPGV 471 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +IL NL A GG + + F + G + Sbjct: 472 PQVLRCDGLRLKQILNNLLSNALKFTREGGVRLETDTADGHSVRFRVTDTGPGI-PADLH 530 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + LA RL + L Sbjct: 531 EVIFEKFSQGSADVSTQHGGTGLGLALSRGLAELMGGRLTVASEPGQGACFTLELP 586 >gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 973 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56 ++I + + S + H++ +P+ +I +L+L+ G+ L+ +S Sbjct: 482 RDITREREVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDLLNVS 541 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSW 104 + ++ + I L ++ + + Sbjct: 542 LSNTERLIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSIDMDL 601 Query: 105 TGEKID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +IL+NL A V +S + + FS++ G Sbjct: 602 QPGLPSVLADRDRSTQILINLLSNAIKFSVGSQSVLLSARTDGSMVYFSVRDWGRGIDL- 660 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I V + + L E R+ E + L Sbjct: 661 ENQERIFQKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLESELGRGSTFTFTLP 719 >gi|304379967|ref|ZP_07362696.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304341547|gb|EFM07457.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 608 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|221141404|ref|ZP_03565897.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424215|ref|ZP_05600644.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 55/2053] gi|257426892|ref|ZP_05603294.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 65-1322] gi|257429528|ref|ZP_05605915.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 68-397] gi|257432175|ref|ZP_05608538.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus E1410] gi|257435136|ref|ZP_05611187.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus M876] gi|282912933|ref|ZP_06320725.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus M899] gi|282922561|ref|ZP_06330251.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus C101] gi|293497986|ref|ZP_06665840.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 58-424] gi|293511576|ref|ZP_06670270.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus M809] gi|293550185|ref|ZP_06672857.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus M1015] gi|257273233|gb|EEV05335.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 55/2053] gi|257276523|gb|EEV07974.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 65-1322] gi|257280009|gb|EEV10596.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 68-397] gi|257283054|gb|EEV13186.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus E1410] gi|257285732|gb|EEV15848.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus M876] gi|269939545|emb|CBI47903.1| transcriptional regulatory protein WalK [Staphylococcus aureus subsp. aureus TW20] gi|282314782|gb|EFB45168.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus C101] gi|282323033|gb|EFB53352.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus M899] gi|290919232|gb|EFD96308.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus M1015] gi|291096917|gb|EFE27175.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus 58-424] gi|291465534|gb|EFF08066.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus M809] gi|329312743|gb|AEB87156.1| Sensor protein kinase walK [Staphylococcus aureus subsp. aureus T0131] Length = 608 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|302749930|gb|ADL64107.1| multi-sensor signal transduction histidine kinase, WalK [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 608 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|170025130|ref|YP_001721635.1| signal transduction histidine kinase, nitrogen specific, NtrB [Yersinia pseudotuberculosis YPIII] gi|169751664|gb|ACA69182.1| signal transduction histidine kinase, nitrogen specific, NtrB [Yersinia pseudotuberculosis YPIII] Length = 604 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47 M + L A+ L + + H+I +P+ +I + + E + Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 +++ + + + L +R + V+ + +I + + Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162 + LLNL++ A ++ R G + I++ +++ S+ G R + Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E++ R+ + Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582 >gi|49482272|ref|YP_039496.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252] gi|282907066|ref|ZP_06314914.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus Btn1260] gi|282910045|ref|ZP_06317853.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912293|ref|ZP_06320089.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus WBG10049] gi|283959503|ref|ZP_06376944.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus A017934/97] gi|295429316|ref|ZP_06821938.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589182|ref|ZP_06947823.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus MN8] gi|81652064|sp|Q6GKS6|WALK_STAAR RecName: Full=Sensor protein kinase walK gi|49240401|emb|CAG39047.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252] gi|282323989|gb|EFB54305.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus WBG10049] gi|282326111|gb|EFB56416.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329965|gb|EFB59486.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus Btn1260] gi|283789095|gb|EFC27922.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus A017934/97] gi|295127075|gb|EFG56719.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577693|gb|EFH96406.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus MN8] gi|312436840|gb|ADQ75911.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH60] gi|315195245|gb|EFU25633.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00] Length = 608 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 587 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 24/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + + D + +I S ++ + Sbjct: 362 FVANVSHELKTPITSIKGFAETLLDGAMHDAQTLEYFLTIILKESERLQHLIQDLLDLSK 421 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRERAKILL 120 + F SV L + V+ + A DK++ + +T +I + Sbjct: 422 IEQQGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCYMYGDLHRLKQIFI 481 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A A P GG+VT+ V+ + E + G E +I + Sbjct: 482 NLINNAIAYTPAGGRVTVYVEKDEKELHVHVSDTGIGIEQKEIP-RIFERFYRVDKARSR 540 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V L + + + + Sbjct: 541 NSGGTGLGLAIVKHLVEAHHGTISVKSEVGIGTTFTV 577 >gi|86157066|ref|YP_463851.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773577|gb|ABC80414.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 373 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +A+ L S L A+ L S + H++ +P+GAI EL E ++++ Sbjct: 134 LAEARASWLRSEQLAAVGRLASGVAHEVGNPLGAISGYAELARGRIRAGEAEQAEDLVAR 193 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE 107 I + + ++ + + V + I L + R ++ Sbjct: 194 IAVEAGRIDAIVRDLLELARPSAPVVAPIALSGPVDAALRLARVQARLREVRAELDLPAS 253 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + A++ LNLF+ A ++ G + + + + + +G + Sbjct: 254 LPPVLADEARLAQVFLNLFLNAGDAMGGRGTLRVEARAVEGAVEVEVSDDGPGIAPEDLP 313 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ D + + L L V L + Sbjct: 314 -RVFDPFFTTKPPGAGTGLGLSVSHGLVEAMGGDLSAANGPGGGAVFRLRLRR 365 >gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 592 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSS 57 +N L +D L S + H++ +P+ A+ S E L E E ++ LI + Sbjct: 345 QNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRESECSREIKEEMLDLIIRNI 404 Query: 58 MSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWT 105 + + D I + Sbjct: 405 DRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNVTKHAKDKSIKIMVNCPDDV 464 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +I +NL A P G+VT+ V+D ++ S+K NG EK Sbjct: 465 PAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTVIVEDHEDYLQTSIKDNGIGI-LEEKRD 523 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D + + + ++ E + L K Sbjct: 524 KIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLESETGKGSTFTFRLPK 579 >gi|301052048|ref|YP_003790259.1| sensor histidine kinase [Bacillus anthracis CI] gi|300374217|gb|ADK03121.1| sensor histidine kinase; possible sporulation kinase [Bacillus cereus biovar anthracis str. CI] Length = 672 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661 >gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 637 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 61/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 M ++ + + ++ + + H+I +P+ AI E++ E E + + Sbjct: 264 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 323 Query: 55 LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + ++ + L+ + T + + + ++ + Sbjct: 324 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 383 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + S ++L N A + G V++ + + G Sbjct: 384 RPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 442 Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E L Sbjct: 443 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 497 >gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 635 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 61/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 M ++ + + ++ + + H+I +P+ AI E++ E E + + Sbjct: 262 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 321 Query: 55 LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + ++ + L+ + T + + + ++ + Sbjct: 322 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 381 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + S ++L N A + G V++ + + G Sbjct: 382 RPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 440 Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E L Sbjct: 441 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 495 >gi|228931825|ref|ZP_04094721.1| hypothetical protein bthur0009_3110 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827805|gb|EEM73543.1| hypothetical protein bthur0009_3110 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 674 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 448 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 507 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 508 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 567 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 568 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 626 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 627 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 663 >gi|229182716|ref|ZP_04309957.1| hypothetical protein bcere0004_2990 [Bacillus cereus BGSC 6E1] gi|228600801|gb|EEK58380.1| hypothetical protein bcere0004_2990 [Bacillus cereus BGSC 6E1] Length = 674 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 448 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 507 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 508 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 567 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 568 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 626 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 627 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 663 >gi|225862372|ref|YP_002747750.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|225790293|gb|ACO30510.1| sensor histidine kinase [Bacillus cereus 03BB102] Length = 672 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661 >gi|196045264|ref|ZP_03112496.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|196023848|gb|EDX62523.1| sensor histidine kinase [Bacillus cereus 03BB108] Length = 672 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661 >gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 637 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 61/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 M ++ + + ++ + + H+I +P+ AI E++ E E + + Sbjct: 264 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 323 Query: 55 LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + ++ + L+ + T + + + ++ + Sbjct: 324 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 383 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + S ++L N A + G V++ + + G Sbjct: 384 RPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 442 Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E L Sbjct: 443 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 497 >gi|325694847|gb|EGD36752.1| sensor histidine kinase VicK [Streptococcus sanguinis SK150] gi|327461011|gb|EGF07344.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1057] Length = 449 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 + + L +++ + + I + + + Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GG +T+S++ + + I S+ G + F + + Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432 >gi|323351212|ref|ZP_08086868.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66] gi|322122436|gb|EFX94147.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66] gi|325690803|gb|EGD32804.1| sensor histidine kinase VicK [Streptococcus sanguinis SK115] gi|325696128|gb|EGD38019.1| sensor histidine kinase VicK [Streptococcus sanguinis SK160] Length = 448 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 + + L +++ + + I + + + Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GG +T+S++ + + I S+ G + F + + Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432 >gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] Length = 1272 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 58/240 (24%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +M + + + H+I +P+ AI +LL + + S Sbjct: 778 LKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSFPSGKEASYLDAIRSSG 837 Query: 61 IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104 L VD + +I + + + + Sbjct: 838 KNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFILDYAPAL 897 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLAR 159 ++L NL A +G ++SK + S++ G R Sbjct: 898 PPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKVDLTISVEDTGIGIR 957 Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ + + L + E + + Sbjct: 958 PEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVNIP 1017 >gi|269928609|ref|YP_003320930.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787966|gb|ACZ40108.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 668 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 24/233 (10%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------------GIEDEVMQLI 53 ++ S H++ +P+ +I ++LLD +++ + Sbjct: 413 QEAREAIKARDEFLSVAAHELRTPLTSIKGYIQLLDRRLAIEQPDIAALRASMEKLRPQL 472 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWT 105 L R+ G+ L I + + D + R+ V T Sbjct: 473 ARFERIVRDLLDISRIDRGHLALQREPCDLAAIAREVFDAVEHSVDHDPAQPMRLSVPDT 532 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I ++L NL A G+V + V+ + ++ G E+ Sbjct: 533 LPGIWDGARITQVLANLLSNALKFSTGRGEVVMEVRREGTHAVICVRDQGVGMTEEEQSR 592 Query: 166 QIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + E + L Sbjct: 593 VFEPFFRADSIVGHIPGTGLGLHITKRIVELHGGSITVESTPRIGSTFTVRLP 645 >gi|229131323|ref|ZP_04260224.1| hypothetical protein bcere0014_2940 [Bacillus cereus BDRD-ST196] gi|228652144|gb|EEL08080.1| hypothetical protein bcere0014_2940 [Bacillus cereus BDRD-ST196] Length = 672 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEERTYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSIGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G + ++ +N + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKILTISTYKECQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|226310398|ref|YP_002770292.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093346|dbj|BAH41788.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 522 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +++ L+ + L S I HD+ +PI I +E + + E M S Sbjct: 280 LQESVGLRLADEESRKELISNISHDLRTPITNIKGYIEGIRDGVADTPEKMDKYVNIIYS 339 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-- 117 + L + +D E V D ++ + EK ++ + + Sbjct: 340 KAVDLDLLVDELFLYSKLDLKQVPFTFEHVDIVQFLDDCIDELHYDLEKKGITIQWNQRT 399 Query: 118 ---------------ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160 +LN+ + + + KV + + +K NG Sbjct: 400 AEGTLVIADLEKIKRTVLNIIGNSQKYMDKPEKVICVSVQADAHWATIEIKDNGIGIPQE 459 Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ E + L++ Sbjct: 460 AIPHLFERFYRVEQSRNSSTGGSGLGLSIARQIVEGHGGKIWVESKQGVGTSVFFTLKR 518 >gi|186894604|ref|YP_001871716.1| signal transduction histidine kinase, nitrogen specific, NtrB [Yersinia pseudotuberculosis PB1/+] gi|186697630|gb|ACC88259.1| signal transduction histidine kinase, nitrogen specific, NtrB [Yersinia pseudotuberculosis PB1/+] Length = 604 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47 M + L A+ L + + H+I +P+ +I + + E + Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 +++ + + + L +R + V+ + +I + + Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162 + LLNL++ A ++ R G + I++ +++ S+ G R + Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E++ R+ + Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582 >gi|125718371|ref|YP_001035504.1| histidine kinase [Streptococcus sanguinis SK36] gi|125498288|gb|ABN44954.1| Histidine kinase, putative [Streptococcus sanguinis SK36] gi|324993853|gb|EGC25772.1| sensor histidine kinase VicK [Streptococcus sanguinis SK405] gi|324994826|gb|EGC26739.1| sensor histidine kinase VicK [Streptococcus sanguinis SK678] gi|325687267|gb|EGD29289.1| sensor histidine kinase VicK [Streptococcus sanguinis SK72] gi|327463117|gb|EGF09438.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1] gi|327470648|gb|EGF16104.1| sensor histidine kinase VicK [Streptococcus sanguinis SK330] gi|327474728|gb|EGF20133.1| sensor histidine kinase VicK [Streptococcus sanguinis SK408] gi|327490285|gb|EGF22073.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1058] gi|328946752|gb|EGG40890.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1087] gi|332358682|gb|EGJ36505.1| sensor histidine kinase VicK [Streptococcus sanguinis SK355] gi|332358953|gb|EGJ36774.1| sensor histidine kinase VicK [Streptococcus sanguinis SK49] gi|332362448|gb|EGJ40248.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1056] gi|332367142|gb|EGJ44878.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1059] Length = 449 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 + + L +++ + + I + + + Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GG +T+S++ + + I S+ G + F + + Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432 >gi|325971109|ref|YP_004247300.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta sp. Buddy] gi|324026347|gb|ADY13106.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta sp. Buddy] Length = 397 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 72/230 (31%), Gaps = 20/230 (8%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 N S +L ++ + + + H+I +P+ A+ L+LL + E + L Sbjct: 148 NEARLRRSENLASMTTMAAGVAHEIKNPLAAMAIHLQLLRKAFGRKESLTLDDAQRYLDV 207 Query: 58 --MSAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + +D+ V+ + R+++ Sbjct: 208 LDEEISRLNSIVVDFLFAVRPMDTRLRLAQITRTLEEVTNFVMPELSEHHVRMKLDLPTS 267 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 L + + LLNL A ++ GG + + V+ +N+ + + G + Sbjct: 268 LPKLEFDEHLIKQALLNLIKNAMNAMEGGGMIILQVRHDQNQVLLKVIDTGIGM-DEQTQ 326 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + E+K + + + Sbjct: 327 QKIFEPYFTTKATGTGLGLTVVYKIMKEHKGDITVQSKLGEGTTFTLYFP 376 >gi|295704406|ref|YP_003597481.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294802065|gb|ADF39131.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 695 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58 K S L A+ L + I H+I +P+ AI ++LL E E M +I Sbjct: 470 KTEELLQKSEKLAAVGQLATAIAHEIRNPLTAIKGFMQLLTEKASKEELTYMNIISSEIE 529 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKID 110 I L + Q + + ++ + Sbjct: 530 RIERITNEFMSVAKPQAVTFQSIDLQLLIQQVILLLQPQATMKNIFIELNSYGEMPFVYC 589 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169 S + ++ +N+ A ++P GG++ + ++ N + G E+ + + Sbjct: 590 ESNQMKQVFINILKNAIEAMPSGGEIKVELRKKDNNHIHIQIIDEGVGI-SKERIKHLGE 648 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + +++ L + + + L Sbjct: 649 PFYSIKEDGIGLGLMICFNIIQQHQGTLSIDSEVNKGTSVEICLP 693 >gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 411 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 59/229 (25%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 +S+ L + + + H+I +P+ AI LL + E + + + + Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240 Query: 64 LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGE 107 L+ + + D L L I + K + + Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLKDKPEIKLICKAGTDEWI 300 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +I+ NL A G ++E F + G E +I Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E L Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408 >gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] Length = 411 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 59/229 (25%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 +S+ L + + + H+I +P+ AI LL + E + + + + Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240 Query: 64 LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGE 107 L+ + + D L L I + K + + Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLKDKPEIKLICKAGTDEWI 300 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +I+ NL A G ++E F + G E +I Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E L Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408 >gi|228985087|ref|ZP_04145254.1| hypothetical protein bthur0001_17880 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774574|gb|EEM22973.1| hypothetical protein bthur0001_17880 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 293 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEKKRKHYLTIIETE 115 Query: 57 SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + + + + Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERATYRLDQQLKQIVLNSEPLWDEKEIELDLDLEKV 175 Query: 108 KIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 I +E ++ +NL + P GG +TI + + + ++ +G + Sbjct: 176 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYETLVEVRIRDSGIGISEEQKQHI 235 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + + K Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHRGEIKVESEEGNGTEFTVCIPK 289 >gi|158521376|ref|YP_001529246.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510202|gb|ABW67169.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 496 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + ++ LSS + L S + H I +P+ +I+ L L + E + ++ Sbjct: 257 LRQSREMLLSSEKMALVGRLASVVAHSIRNPMTSINMRLFSLQRNLSLSSSQKEDLDVVA 316 Query: 55 LSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ F R VD + ++ + + V Sbjct: 317 DEMRRLDNIVRNFLEFSRPHKLKKQLVDISQVIDTSIDLLSYKLDLYGITVVREKQPGGI 376 Query: 111 LSRERA----KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL + A ++ + + I + ++ NG Sbjct: 377 SVEADPGLIKEVFVNLIVNACEAMEEGGRIKIAETIIVTGKMGKAVVINVIDNGPGI-PE 435 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I+ S D + + E+ L + L Sbjct: 436 EMQERILKPFETSKADGTGLGLFVAARTIEEHGGSLEFTSAVGQGTTFTITLP 488 >gi|312880454|ref|ZP_07740254.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310783745|gb|EFQ24143.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 817 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 68/241 (28%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 ++ M+ V L + HD + + I EL L+ ++ + Sbjct: 433 EDQLLQAQKMESVGRLAGGVAHDFNNLLTGILGYTELARGKLEGQEGAVRDLEEVERLGR 492 Query: 59 SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDL 111 A + + R VD + + ++++ + D +++ G Sbjct: 493 RATDLTRQLLAFSRRQTLDPKVVDLNERIEESLRLLDRLLGEDVQIRFRPGEDLGLVRVD 552 Query: 112 SRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGN 156 + ++L+NL + A ++P GG V + + + G Sbjct: 553 PAQFEQVLVNLAVNARDAMPEGGILSLRTSHVELRAEAAVWYLEAAPGSYVLLEVSDTGT 612 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + V + ++ L L Sbjct: 613 GM-DEETRAHLFEPFFTTKPVGKGTGLGLSMVYGIVKQHGGHLWVYSEPGKGSTFKIYLP 671 Query: 215 K 215 + Sbjct: 672 R 672 >gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 869 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 753 DKIYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865 >gi|294849847|ref|ZP_06790587.1| sensor protein kinase walK [Staphylococcus aureus A9754] gi|294823395|gb|EFG39824.1| sensor protein kinase walK [Staphylococcus aureus A9754] Length = 608 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLNL 122 D + D I I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDITFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|229035319|ref|ZP_04189227.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271] gi|228727999|gb|EEL79067.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271] Length = 603 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 374 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 433 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +S Sbjct: 434 RIESITNEFMTVAKPQVVKIQLNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 493 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 494 EGNQLKQVFVNIVKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 552 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 553 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLP 597 >gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 998 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 63/245 (25%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50 + + + ++DL + + + H++ +P+ A+ ++L E E + + Sbjct: 480 TQELEASNQALDLARDAAEAANKAKSTFLANMSHELRTPLNAVIGYSDMLMEDLEESDYL 539 Query: 51 QLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 ++ + + Y + + + +++ + + Sbjct: 540 PDLQKINSAGKHLLELINAVLDLSKIEAGKMELYLEEFNINELVQGVAALVKPLMDKNHN 599 Query: 100 VQ----VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 G+ + + + LLNL A G D F + G Sbjct: 600 RFALQIPDTLGKMTADATKVRQSLLNLLSNASKFTKAGTVTLNVWIDDTQRVFFQISDTG 659 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 PE+ ++ + + V Sbjct: 660 IGM-SPEQLDKLFQEFTQADNSTTRNYGGTGLGLAISRRFCRMMGGDITVTSEPGVGSVF 718 Query: 210 SALLE 214 + L Sbjct: 719 TIELP 723 >gi|222053954|ref|YP_002536316.1| histidine kinase [Geobacter sp. FRC-32] gi|221563243|gb|ACM19215.1| histidine kinase [Geobacter sp. FRC-32] Length = 406 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 ++ DL L + + + H+I +P+ I +++ + +++ Sbjct: 178 KQHQREMAHRKDLARLGEMGAMLAHEIRNPLAGIKGFAQVIGKKPMDERNSAFAGKIVAE 237 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEKI 109 + + Y S + +IE + V ++ Sbjct: 238 TLRLESLVFNLLSYARSGPISATDFVVCGLIEGAVALVRGEVEAKGVIISIKCPEDLRLS 297 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++LNL A ++ GG V I S+ + NG E +I + Sbjct: 298 GDRDRLGQVMLNLLQNAVQAVSHGGMVDIVADRSQAGVTMVITDNGAGI-GKEVAERIFE 356 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ + ++ Sbjct: 357 PFFTTKARGTGLGLAICKKIVEEHGGTIGVAGKPGRGAAITLTFP 401 >gi|229191305|ref|ZP_04318291.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876] gi|228592110|gb|EEK49943.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876] Length = 448 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M KNI ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKNIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448 >gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483] gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483] Length = 936 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 64/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + L + + H+I +P+ AI +LL E E + I++ + Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELSERQEYIKIVRENND 757 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107 + +G VD + DI + + + + + Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTSGDVDVNLLCEDIVRSMGMKAKGEVELVLDNHLPVCH 817 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I +++ N A G + + + E F ++ G + Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + + Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924 >gi|118476083|ref|YP_893234.1| GAF sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118415308|gb|ABK83727.1| GAF sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 677 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 451 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 510 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 511 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 570 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS N + +++ G PE ++ Sbjct: 571 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGKNCVVLAVRDEGKGI-SPEVLEKLGTPF 629 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 630 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 666 >gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 869 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865 >gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 869 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865 >gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 862 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 626 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 685 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 686 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 745 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 746 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 805 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 806 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 858 >gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 789 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 553 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 612 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 613 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 672 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 673 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 732 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 733 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 785 >gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 869 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865 >gi|255306856|ref|ZP_05351027.1| two-component sensor histidine kinase [Clostridium difficile ATCC 43255] Length = 900 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 +N + L + L + HD+ +P+ I ++ ELL V Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + +S + ++ V+ +I + A+ Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+NL + K+ I+V + + F + NG E Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGTGI-SKELKK 841 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + +K ++ E D L K Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897 >gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 944 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 72/242 (29%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------------DEVGIEDEV 49 +++ L S + H++ +P+ +I SL+L+ + Sbjct: 450 RDVTREREIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTM 509 Query: 50 MQLIRLSSMSAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 +Q+ ++ I + + I +E++ + Sbjct: 510 LQISLNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTI 569 Query: 101 QVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + ++ ++++NL A +G +V +SV + FS++ G Sbjct: 570 ALDVPPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETSVVRFSVRDWGPG 629 Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + ++ + L + ++ + + + Sbjct: 630 IPHTDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFT 689 Query: 213 LE 214 L Sbjct: 690 LP 691 >gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483] gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483] gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 869 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + R+ S Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + +++ NL A G + ++ G Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + L Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865 >gi|153005351|ref|YP_001379676.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028924|gb|ABS26692.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 626 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 20/232 (8%), Positives = 64/232 (27%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQ 51 ++ + L ++ + + + H++ +P+ I L + Sbjct: 392 ERSERQLRETEKLASIGEMAAGLAHELNTPLSNIRALASLARRDLDAGRVELQALKADLA 451 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSW 104 + + + + + + + + + V + Sbjct: 452 DVADQTRRCTTIIDGLLRFARRQPPALAAHDVNRLVHGSLALVRLRAEKKGVTLAFEAGA 511 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + ++ +NL + A + GG+V +S + + +G PE Sbjct: 512 AQAAVVDAAQLEQVFVNLLLNAVDAARPGGRVEVSTATAGGRIAVRVSDDGAGI-APEHL 570 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + L + + L Sbjct: 571 PRIFDPFFTTKAVGEGTGLGLSVSYGIVRNHGGALSVDSAPGRGATFTVSLP 622 >gi|189425843|ref|YP_001953020.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter lovleyi SZ] gi|189422102|gb|ACD96500.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter lovleyi SZ] Length = 365 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMS 59 + L L L + + H++ +P+G I + +LL+ +D + + Sbjct: 129 QADRLATLGTLAAGLAHEVKNPLGGIKGAAQLLERELDDDSDLLEYPRVMIKEAERIDKI 188 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKI 118 L+ V+ + LGDI + + + D + + + + A++ Sbjct: 189 IRQLLELASPRGPRYTPVNLHMVLGDIILLQREAAGSRDVSISTGFDPSIPPIMADEAQL 248 Query: 119 LLNLFMVAHASLPRGGKVTI--------------SVQDSKNENIFSLKINGNLARFPEKF 164 + ++ + ++ + G E Sbjct: 249 TQVFLNLIRNAIEAMPEGGRLSVTSRVLAEYHLARNENRSRMVAVEVADTGPGI-SEENL 307 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + E++ L + +S LL Sbjct: 308 AKVGTPFFTTKDNGTGLGLAICQKIVGEHRGMLKIDSKPGQGTKISVLLP 357 >gi|56459432|ref|YP_154713.1| osmolarity sensor protein [Idiomarina loihiensis L2TR] gi|56178442|gb|AAV81164.1| Signal transduction histidine kinase (contains HAMP domain) [Idiomarina loihiensis L2TR] Length = 436 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 17/204 (8%), Positives = 57/204 (27%), Gaps = 6/204 (2%) Query: 17 LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 LL + + HD+ +P+ I + E++ ++ + + + ++ + Sbjct: 227 LLMAGVSHDLRTPLTRIRLAAEMMPQGEDCLAQGIIEDIDDMNDIIDQFIDYVRLDQQES 286 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 + + + D + + ++++NL A Sbjct: 287 SSRESLNELIEQTVANVPDNWQKQFELDLGKLPRVWLRPLSMKRVIINLLENAERYGKHQ 346 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190 V+ + F + +G + F G+ + + + Sbjct: 347 VVVSSGHDKKQKRVWFRVTDDGPGIPEEQQATLFEPFTQGDKARGGVGSGLGLAIIKRIV 406 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 407 DRHDGSIKLQNRPEGGLCVRIELP 430 >gi|323699081|ref|ZP_08110993.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459013|gb|EGB14878.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 652 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 +++ +L+ L A+ L + + H++ +P+ ++ +L L D+ + Sbjct: 414 RSLEEDLNEAKRLAAIGSLAAGVAHEVRNPLSSLRGFAQLFATKLKGQAPLDQYAAAMVQ 473 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + I + D + + F DK+++ + + Sbjct: 474 EADRLNRVVTDLLYLAKPRRLDPMFIDMFKAGDSLRQLMRFDFEDKQIEPEFDFGPEPVW 533 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEK 163 + ++LLNL + +L + NG PE Sbjct: 534 ADPDALRQVLLNLISNSLDALRGCADCDKPSHVRLVSMRGHKGTWIIVADNGPGM-DPEI 592 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + V + +K R++ E + Sbjct: 593 RDDVFKPFVTGKKTGTGLGLAIVQNIMRAHKGRVIIESEPGRGTEMKLFFP 643 >gi|295704203|ref|YP_003597278.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294801862|gb|ADF38928.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 459 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 69/235 (29%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 + KN ++ + + + H+I SP+ +I L + + + + + Sbjct: 213 LTKNFNQMTKELNKIETMRQEFIASVSHEIQSPLTSIRGFSAALKDDIVSEDKKIQYLTI 272 Query: 53 IRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 I S + + + + + + + Sbjct: 273 IEKESTRLSQLSSNLLKLASLDSEHQTLMLQQYRLDEQIRHVVMALEPQWTKKNIEIDLD 332 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +I+ ++ ++ LNL A P G V IS+ E +K NG + Sbjct: 333 LSNVQIEADKDLLEQVWLNLVTNAIKYTPENGFVKISIHQKNEEIDVKIKDNGIGIAEED 392 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + T+ + + ++ + E + + S L Sbjct: 393 QKYIFESFYKVDKSRTLKGSGLGLAITKKIVRLHEGAVRVESKKEQGSIFSVTLP 447 >gi|224826736|ref|ZP_03699836.1| integral membrane sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] gi|224600956|gb|EEG07139.1| integral membrane sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] Length = 911 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 23/233 (9%) Query: 6 CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SSMS 59 L +D L S + H++ +P+ +I E+L + + + Sbjct: 674 NARLQELDRLKDDFMSSVTHELRTPLTSIRALSEILRDDPDIPPPERQRFHAIIVGETER 733 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKID 110 + A +T +D + + + + + Sbjct: 734 LTRLVNQTLDLAKIESGNAEWHTTEIDLKQLVAQSAEATGQLFRDKEVTLSLELPQRVPP 793 Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 +++LNL A + RGG+VT+ + ++ + NG E F Sbjct: 794 LLADRDRLIQVMLNLLSNAAKFVGRGGRVTVRLAETPEGLRVDVADNGKGIAPEEQQLIF 853 Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + G + + + RL E I S +L + Sbjct: 854 ERFRQGGGGMTDKPAGTGLGLPISRHIIEHFGGRLWVESIPGAGATFSFVLPR 906 >gi|322516693|ref|ZP_08069602.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC 49124] gi|322124726|gb|EFX96164.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC 49124] Length = 446 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LD+ + +E+ + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALHEEIAPNFIKVSLDETNRMMRMISDLLALSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115 + T + I + + ++ I + + Sbjct: 270 IDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRDYSVNSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+S++ + ++ I S+ G + F + + Sbjct: 330 TRVVDNILNNAIKYSPDGGKITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433 >gi|313617213|gb|EFR89705.1| alkaline phosphatase synthesis sensor protein PhoR [Listeria innocua FSL S4-378] Length = 254 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE++ +I+ S + Sbjct: 26 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 85 Query: 67 M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + V E E I V + Sbjct: 86 ILALSRIEQNPVAENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRD 145 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 146 KLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 204 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 205 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 252 >gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 578 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 71/238 (29%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 M + + + + H++ +PI +I E L + + +++ + + Sbjct: 343 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGALDDREALLEFLSIILK 398 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTG 106 + ++ + L + D R +++ Sbjct: 399 ESERLQSLVQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHKASEKDIRFELNIPK 458 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + + ++ LNL A P G VTIS + ++ + + G E Sbjct: 459 DPLYVQGDVYRLKQVFLNLANNALTYTPEHGTVTISAKLAEEDIQIEVADTGIGIEKEEI 518 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + V L ++ ++ + + L++ Sbjct: 519 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKSEQGQGTIFIVALKR 575 >gi|50913816|ref|YP_059788.1| hypothetical protein M6_Spy0470 [Streptococcus pyogenes MGAS10394] gi|94988066|ref|YP_596167.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS9429] gi|94991952|ref|YP_600051.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes MGAS2096] gi|94993852|ref|YP_601950.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes MGAS10750] gi|139474239|ref|YP_001128955.1| sensor histidine kinase [Streptococcus pyogenes str. Manfredo] gi|50902890|gb|AAT86605.1| VicK [Streptococcus pyogenes MGAS10394] gi|94541574|gb|ABF31623.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS9429] gi|94545460|gb|ABF35507.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes MGAS2096] gi|94547360|gb|ABF37406.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes MGAS10750] gi|134272486|emb|CAM30749.1| sensor histidine kinase [Streptococcus pyogenes str. Manfredo] Length = 450 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + T L + + R + + + Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434 >gi|19745651|ref|NP_606787.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS8232] gi|19747782|gb|AAL97286.1| two-component sensor histidine kinase [Streptococcus pyogenes MGAS8232] Length = 450 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + T L + + R + + + Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434 >gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 430 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 26/235 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 L + A L + + H+I +P+ +I E L D+ + +I + Sbjct: 187 TELKRLDQVK--AELVANMSHEIKTPLTSIKGFAETLLDGAMDDRETCRRFLTIIDSEAD 244 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106 + + ++ + +I +++ + Sbjct: 245 RMSRLINDSLTLSRLESQDRNISIEPINLHELIVNILDMVDSSAKTKNIDVTFYDQATDM 304 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++LNL A P GGKVTI+++D + S+K G E + Sbjct: 305 KIDGNEDRMHQLMLNLIDNAIKYTPSGGKVTITIKDEGEDAFISVKDTGIGI-AKEHMPR 363 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + + L K Sbjct: 364 LFERFYRVDKGRSRNMGGTGLGLAIVKHVVMSMNGTIDVNSELGRGTEFIVRLPK 418 >gi|309792280|ref|ZP_07686752.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308225821|gb|EFO79577.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 810 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58 + + S L A+ L + + H++ +P+ ++ +L L + E Q I Sbjct: 420 RRLEQQLIQSEKLSAIGQLVAGVAHELNNPLTSVSGYAQLTLRNKDLSPETRQDIEQIHA 479 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKID 110 + L F R +V L + + VQ+ Sbjct: 480 QSERAAKIVQNLLIFAREHTPERSTVVINEVLRSALALQAYQLRVDNIAVQLDLDPNLST 539 Query: 111 LSRERAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNL 157 + ++ A ++ R V + + G Sbjct: 540 TIADPHQLQQVFLNLITNARHAMVERGGAGTLTLRTRVVPAQELGQEPMIRIEVADTGIG 599 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + E+ ++ E + L Sbjct: 600 IPERNLR-KIFNPFFTTKPIGQGTGLGLSICFGIIQEHDGQIWAESQQGAGTRVYVTLP 657 >gi|329765880|ref|ZP_08257446.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137723|gb|EGG41993.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 487 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 72/222 (32%), Gaps = 11/222 (4%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + ++ + L + +++ HD+ +P+ I N EL + E++ ++ Sbjct: 270 LERIRKESVKNEKLALIGDMTAKLSHDLRNPLTIIKNGFELFELGLPEEKRKDNMKRIQN 329 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + L I + + I + + +++ I ++ +R Sbjct: 330 AVDRISYEIEAIMNFVRDNPLHKEQISLRRIIDITIENIEIPEGIKIEKEIPDITINVDR 389 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFTQIVDGNVE 173 +IL + ++ I++ ++ +G +K +I Sbjct: 390 EQILRVFSNIIINAIDAMKNGKITIIAKSKTKTIEIEFTDSGPGI-PKDKIDKIFQPLFT 448 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L ++ + + + +L K Sbjct: 449 TKSKGTGLGLSICKTLIEKHGGGISVKNNP---TRFTVILPK 487 >gi|297568632|ref|YP_003689976.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924547|gb|ADH85357.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 793 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 28/232 (12%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMS 59 S + A+ L + + HD + + ++ + L+ + E++ R ++ Sbjct: 409 QSAKMEAVGTLAAGVAHDFNNILTSLISFATLVKRRHRDDEVSQDYLQEILDSARRAAEL 468 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 L + R D + ++++ I + +++ + + + +I Sbjct: 469 TRSLLAYSRKQQIELKPEDLGKTVEKNQKMLRRIIRENIELKLELIDRPLPVMADHVQIE 528 Query: 120 LNLFM---VAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARFPEKF 164 L A ++P GG++TI + ++ G PE Sbjct: 529 QVLMNLASNAQDAMPAGGRLTIGAGWQEKAPSELELVTAGPWAVLTMADTGFGI-DPEIR 587 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + ++ + E + L Sbjct: 588 KRIFDPFFTTKEVGRGTGLGLSMVQGVVQQHGGAIRLESEPGQGSTFTIYLP 639 >gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 618 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 26/250 (10%), Positives = 74/250 (29%), Gaps = 37/250 (14%) Query: 1 MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDE---VGIE 46 + + + + +++ + + + H++ +P+ +I E+L + + Sbjct: 363 LEQKVKERTAELEIAKIHAEAANRAKSEFLANMSHELRTPLNSIIGFTEVLQDQLFGTLN 422 Query: 47 DEVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVI 90 ++ ++ ++ SA + L+ V ++ + E+ Sbjct: 423 EKQLEYLKDIHDSAKHLLNLINDILDLSKIEEGKTELELSEFRVSDVVNVSLIMFKEKAS 482 Query: 91 EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 + I +D + R+ ++L NL A P GG V I+ + ++ Sbjct: 483 KHGIKLDAEISKEADITVTADERKIKQVLFNLVSNAVKFTPDGGSVKITAERKEDMIEIV 542 Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ G E ++ + L + ++ E Sbjct: 543 VEDTGIGI-KKEDRDKLFQPFSQLETTYTKKYQGTGLGLALSKSLVELHGGKIWCESEYG 601 Query: 205 HNVVLSALLE 214 Sbjct: 602 KGSRFGFSFP 611 >gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15] gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter metallireducens GS-15] Length = 576 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 65/237 (27%), Gaps = 28/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 AK + L + + H++ +P+ +I +L + + + + ++R Sbjct: 340 AKERAEAADQLKSAFL--ATMSHELRTPLNSIIGFTGILLQGLGGPINDEQAKQLTMVRH 397 Query: 56 SSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S+ + + + + + +++ Sbjct: 398 SANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGLVDKKGLRLILEIAD 457 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 G + R ++LLNL A +G ++S+ + S+ +G + + Sbjct: 458 DVGSIVSDQRRVEQVLLNLLSNAVKFTEQGTISVRCSRESE-WYVTSVADSGIGIKEEDL 516 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + E LL Sbjct: 517 -ERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQGEGSTFCFLLP 572 >gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 453 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 66/224 (29%), Gaps = 20/224 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRL------ 64 + + + H++ +PI +I E LLD + + + + + Sbjct: 230 EKMRKDFVANVSHELRTPITSIRGFAETLLDNNITDPATKEFMEIIYKESHRLQLLIEDL 289 Query: 65 --------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + RL + + + + ++V Sbjct: 290 LALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAENKNLTFDLEVPDQLTMRADKDRMK 349 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN-- 171 ++L+NL + P GG + +++ + + F +K +G F + + Sbjct: 350 QVLINLIDNSIHYTPSGGDICLAISEETDVIHFQVKDSGIGMDEKSQTRVFERFYRVDKA 409 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +K ++ E + + + K Sbjct: 410 RSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTTIHIYIPK 453 >gi|75763246|ref|ZP_00743002.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489267|gb|EAO52727.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 801 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISLLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|116623299|ref|YP_825455.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226461|gb|ABJ85170.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 531 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 69/237 (29%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 + K LS+ + ++ L + + H+I +P+ I L+ E Sbjct: 285 LEKTHKVLLSTEKMASIGKLAATVAHEINNPLFGILTYARLVLRNLMKVEVEGRDEMAEQ 344 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101 +Q I S +K + S L I + +Q Sbjct: 345 LQTIERESKRCGDLVKNLLSFSRQAPSNREPQDLNTIVHRATLLVKHKLDMQSIELRETL 404 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLAR 159 + + +++L L + A ++P+ +V+ + + + ++ G+ Sbjct: 405 AEGLPPVECDANQIQQVILVLMVNASEAMPKGGTLEVSTEFDKTAEQGVVRVRDTGSGI- 463 Query: 160 FPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + D + + ++ + L Sbjct: 464 PADVLPRIFDPFFTTKEDVNRTGLGLAVAAGIVEQHTGEITVHSTPGEGTQFRVALP 520 >gi|47569586|ref|ZP_00240264.1| sporulation kinase [Bacillus cereus G9241] gi|47553769|gb|EAL12142.1| sporulation kinase [Bacillus cereus G9241] Length = 672 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ + L+LL E ++ + Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS N + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGKNCVVLAVRDEGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|302039214|ref|YP_003799536.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300607278|emb|CBK43611.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 892 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 17/229 (7%) Query: 2 AKNICFNLSSMDLVALL---CSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 K + L + VA L S + H+I +P+ I E L E + +Q I Sbjct: 661 RKRLQAQLRRTERVAELGTVASGMAHEIGTPMNVILGRAEYLMERTKEEPVRKGLQTIVS 720 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGE 107 + + + L + + Sbjct: 721 QVERITRVMNQLLAFARRRPVEHRALDLRQTIEDNLEIFQERLSHSNISVETSFADACPL 780 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + +++L+NL M A ++P GG + +++ + ++ G+ + ++ Sbjct: 781 VHADADQMSQVLINLVMNAIHAMPGGGLLKLALTPDRGMVRLTVADTGHGM-PRDVIAKV 839 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V + E+ + E + + L Sbjct: 840 FDPFFTTKEFGKGTGLGLTVVKGIIEEHSGTIEVESEPERGTTFTICLP 888 >gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] Length = 930 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 69/229 (30%), Gaps = 18/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +A++ + L + + H+I +P+ AI +LL + + E ++++R ++ Sbjct: 699 LARDKAEMADRLKSAFL--ANMSHEIRTPLNAIIGFSDLLVEAENLEERKEYVKIVRNNN 756 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + G VD + DI ++ + + + + Sbjct: 757 ELLLQLITDILDLSKIEAGTFEFSCGDVDVNLLCEDIVCCMQMKVHEEVELLFDSHLPQC 816 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +R +++LN A +G E ++ G ++ Sbjct: 817 HIISDRNRLHQVILNFVNNAIKFTSQGSIRVGYQVK-GEELEVYVQDTGVGIDEEQQLHI 875 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + R+ + L Sbjct: 876 FERFVKLNSFVPGTGLGLSICQSIIEQLGGRIGVDSELGKGSRFWFRLP 924 >gi|16801705|ref|NP_471973.1| two-component sensor histidine kinase [Listeria innocua Clip11262] gi|16415180|emb|CAC97870.1| two-component sensor histidine kinase [Listeria innocua Clip11262] Length = 591 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE++ +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + V E E I V + Sbjct: 423 ILALSRIEQNPVAENTEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|28898277|ref|NP_797882.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260361872|ref|ZP_05774881.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260878615|ref|ZP_05890970.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260896147|ref|ZP_05904643.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|28806494|dbj|BAC59766.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308086190|gb|EFO35885.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308091183|gb|EFO40878.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308111377|gb|EFO48917.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 679 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ ++ E + I Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M A ++ GK+ + +D E + +G Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + D + + + L E S L K Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667 >gi|254412228|ref|ZP_05026003.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181194|gb|EDX76183.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 423 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSR----ICHDIISPIGAIHNSLELLDE------VGIEDEVMQ 51 A+++ L + + L SR + H+ +P+ I+ S +LL ++++Q Sbjct: 184 AESLRRELEAEKEFSELKSRFIQTVSHEFRTPLNMIYVSAQLLARSHDGLTEEKCNQLLQ 243 Query: 52 LIRLSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + L + + +D + + + K +Q + Sbjct: 244 RTDKAVRRITKILDDVLVFSKASADKLELNPTLLDLEQFCQTLVEDYQVIAGSSKTLQFN 303 Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 G K + + +IL NL A +T+++ + F ++ G Sbjct: 304 APGTKHSVCLDEKLLYQILGNLLSNAINYSQPNSTITLTLTYPDHTVCFQIQDQGIGIPR 363 Query: 161 PEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D + + + V + + + L Sbjct: 364 EDIP-RLFDPFHRARNVSNLPGTGLGLSIVKKAIEIHGGTINVHSEVGIGTTFTVTLP 420 >gi|253700149|ref|YP_003021338.1| histidine kinase [Geobacter sp. M21] gi|251774999|gb|ACT17580.1| histidine kinase [Geobacter sp. M21] Length = 592 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 19/226 (8%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60 + S + A L + I H++ +P+ I +L ++ +I + Sbjct: 361 QLVHSEKMAAFGALGAGIAHEVKNPLAGILGITQLSLRGAGAGHPLEKNLLIIEKETKRC 420 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDLS 112 ++ + + L + + + + Sbjct: 421 KTIIEHLLKFARQEQVEFGEVDLQQVVADALAIVDHQLGINSIKVEQELEPGMPTCRGNA 480 Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++L+NL + A ++ + + + + NG E +I D Sbjct: 481 NQLQQVLMNLMLNAQQAMSGKTGTVKLSARRLEQGGVELRVADNGPGI-SKEIQGKIFDP 539 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + L Sbjct: 540 FFTTKPAGQGTGLGLSVTYGIVKDHGGEIHLESEEGVGTTFIITLP 585 >gi|153005958|ref|YP_001380283.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029531|gb|ABS27299.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 522 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 A+ + L + L S + HD+ +P+ I + L E ++ I Sbjct: 276 ARQAELRARTEALRSGLLSSVSHDLRTPLAVITGAASTLRADLALEPETRRDLSDAICEE 335 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 + + + + +++ L + Sbjct: 336 AERLERLVANLLDMTRLDAGAVEPRREWVPLVEVLGGALTRLDRRLAGRRVVTALPDDLP 395 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L+NL A P G V I + + + G ++ + Sbjct: 396 LVSLDPVLVEQLLVNLLENAAKYTPAGSTVEIGARSEGDTLCVEVGDRGPGIPPGDE-ER 454 Query: 167 IVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + +A + RL+ V L Sbjct: 455 IFERFHRGAHAGVRGVGLGLPIARAIAQAHGGRLVAANRPGGGAVFRLTLP 505 >gi|114763315|ref|ZP_01442739.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Pelagibaca bermudensis HTCC2601] gi|114544113|gb|EAU47123.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Roseovarius sp. HTCC2601] Length = 647 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 72/234 (30%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + + S L A+ + + + H+I +P+ I +++++ G + + LI Sbjct: 412 LEQTFRQLVMSEKLAAIGEITAGVAHEINNPMAVIQGNVDVIRMELGAEAGRVETELTLI 471 Query: 54 RLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 M + + +V + D +++ ++ + E Sbjct: 472 DRQVMRMEAIVGKLLKFAQPSEYSDCAETVALAPVVEDSLMLVDHALSKGAIEVQTDLPE 531 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160 ++ + ++ +NL + A ++ G + +++ +++ +G Sbjct: 532 LPLVAIDAGEMQQVSINLILNAAQAMSGRGHLWLSLAEEMREGVAGVALTVRDSGPGIAE 591 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + V + L Sbjct: 592 EALGSLFDPFFTTRRGEGTGLGLSISQSIVQGAGGIITAGNAPEGGAVFTVWLP 645 >gi|116750690|ref|YP_847377.1| sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116699754|gb|ABK18942.1| Cache sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 619 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 74/236 (31%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + + S L +L L + + H+I +P+ ++ L+ ++ I E + +++ Sbjct: 374 LKRTQAAVARSQQLASLGQLAAGVAHEIRTPLTSLKMFLQSIESELEISFEYEEDFQIAM 433 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKI 109 + + + + D++++I+ + V+ Sbjct: 434 TQILRMEATINRFLDFAKPQAPVFTEVDVKELIQDALLVAGPRAKQQETVVRTRIADSLP 493 Query: 110 DLSRERAKI---LLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLA 158 + +R ++ LLNL + +L + +++ + + + G Sbjct: 494 RIRGDRKQLGEALLNLMVNGLEALNAGGELSLLAELEPSVTDKGLREYIRIDVADTGPGI 553 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + D + + V + R+ E S L+ Sbjct: 554 -REEAMPSLFDPFFTTKATGTGLGLSIVDGTVKRHGGRIRVENGVGGGATFSLLIP 608 >gi|283851137|ref|ZP_06368421.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio sp. FW1012B] gi|283573533|gb|EFC21509.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio sp. FW1012B] Length = 620 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 17/232 (7%), Positives = 56/232 (24%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54 + + L A+ L + + H+I +P+ +I + E Q Sbjct: 371 LREVRRLEAEVRRREKLAAVGNLAAGVAHEIRNPLSSIRGYAAYFGAKFEPGSEDRQAAE 430 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTG 106 + + + + D + + + ++ Sbjct: 431 VMVREVDRLNRVISELIEFARPSDLRRRPVSLADLAAHAARLTRPDAAARGVDIDLAEAA 490 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE 162 ++ + ++ L + ++ + S+ G+ E Sbjct: 491 GGPEIPADPDRLAQALLNLCLNAIQSMEAGGVMRLATGTAPDGRAFISVADTGSGIDPEE 550 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + + + + + L Sbjct: 551 R-DRIFDPYYTTKPHGTGLGLPIAHKIVVAHGGEIRLARRPGGGTLATVYLP 601 >gi|229028176|ref|ZP_04184317.1| hypothetical protein bcere0028_3070 [Bacillus cereus AH1271] gi|228733124|gb|EEL83965.1| hypothetical protein bcere0028_3070 [Bacillus cereus AH1271] Length = 672 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIRDIIPLIKIDTHNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMDTEKVLTISTYKEDQDCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A +K ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHKAKIEIQ-TGSEGTTF 661 >gi|220922972|ref|YP_002498274.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219947579|gb|ACL57971.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 652 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 20/231 (8%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-- 57 + + L A+ L + + H++ +P+ + LL + +V + Sbjct: 276 EAQRMRIHQMEKLSAMGSLLAGVAHELNNPLAILIAQATLLRDKAPTLDVQRRAERIHAA 335 Query: 58 -MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKIDLSR 113 + +K + L DI QV + + V + + Sbjct: 336 AERSGRIVKSFVAMARQEPPRREPVDLNDIVQVAVEMTAYGRRSAGVTLELALAPMLPPI 395 Query: 114 ERA-----KILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFT 165 +++ NL + A L + + +G P+ Sbjct: 396 SGDRDLLGQVVANLLINAAQVLFDHRGDRCITLRTSLDGEAVVLEVADSGPGV-PPDIRE 454 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + I + + R+ E + +L Sbjct: 455 HIFDPYFTTKPVGAGTGIGLSISHRVIESHGGRISVEDRPGGGALFRVVLP 505 >gi|120596909|ref|YP_961483.1| integral membrane sensor signal transduction histidine kinase [Shewanella sp. W3-18-1] gi|120557002|gb|ABM22929.1| integral membrane sensor signal transduction histidine kinase [Shewanella sp. W3-18-1] gi|319424494|gb|ADV52568.1| integral membrane sensor signal transduction histidine kinase [Shewanella putrefaciens 200] Length = 707 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLS 56 + + +++ L AL L + I H+I +P I ++EL+ ++ + + I L Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELMRYELGDNADLVKEEIDLV 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTG 106 + +R Y+ + L + V + + + Sbjct: 512 IQQVMRISTIIRSLLQYSRPGEFNAPLEMQSITPIIEETMVLVRHSIKKQEVILITELSA 571 Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++L+NL + A ++ QD ++ G+ Sbjct: 572 TCLVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWLQQDVPIGVKIEVEDEGSGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I D + D + + + V + L Sbjct: 631 APELLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTVFTIGL 684 >gi|118579341|ref|YP_900591.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502051|gb|ABK98533.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 785 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 75/231 (32%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + ++ L + L +L L I HD + + AI ++ L L++ + ++ Sbjct: 412 LQQSRQEILKTQKLESLGVLAGGIAHDFNNILTAILGNISLARLQLNDTAKVTKRLEEAE 471 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 ++ A + + + I + + + DF V+ + Sbjct: 472 TATTRAKDLTRQLITFARGGEPLKKNIDVSSLLREATDFALHGSNVKCRFDLPDDIWMVE 531 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTI------SVQDSKNENIFSLKINGNLARFPEK 163 + ++++ NL A ++P GG ++I S + + S+ G Sbjct: 532 ADEAQLSQVIHNLVFNAIQAMPGGGTISIGASNVVSQEGGRKFVKISVTDTGTGIPAHH- 590 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI D + +S + + ++ ++ L Sbjct: 591 MQQIFDPYFSTKENSIGLGLATCHSILKKHGGKIRAASTLGRGSTFLVSLP 641 >gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 584 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ +E L ++ ++ + + + ++ + Sbjct: 365 FVSNVSHELRTPLASLKALVETLQEGALEDPPAAQRFLRQMEIEIDNLTQMVRELLELSR 424 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILL 120 I E++ +QV ++ + ++L+ Sbjct: 425 IESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQVLV 484 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177 NL A P GG++T+ V+ F ++ G + F + + + + Sbjct: 485 NLTHNAVKFTPPGGEITLGVKQEGQAICFWVRDTGVGIPPEDLERIFERFYKTDRSRSGE 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E L Sbjct: 545 GTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLP 581 >gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 590 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 19/236 (8%), Positives = 72/236 (30%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55 + ++I ++ + + H++ +P+ I + E L + ++ + + +I Sbjct: 351 LLQDITKQQRLEEMRKEFVANVSHELRTPLTTIKSYAETLLDGALDDSSVARQFLSVIND 410 Query: 56 SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTG 106 + + + R + L + +++ ++ Sbjct: 411 EADRMTRLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELECDLPE 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + + ++ N+ A P GG++ + ++ ++ S++ G + Sbjct: 471 DLPKVFADSDKMEQVFQNILSNAIKYTPEGGRIFVKAENLGSQVQVSIRDTGIGIPKEDL 530 Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + ++ + E + L Sbjct: 531 PRIFERFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKLP 586 >gi|288556615|ref|YP_003428550.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus pseudofirmus OF4] gi|288547775|gb|ADC51658.1| sporulation-specific ATP-dependent protein histidine kinase [Bacillus pseudofirmus OF4] Length = 588 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 62/223 (27%), Gaps = 11/223 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + +++ L + I H+I +P+ +I +L+ ++ +I Sbjct: 347 MLEKKMIRAEKLNIAGQLAAGIAHEIKNPLTSIKGFYKLIKHGMGKESYYTIIDDELDRI 406 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTGEKIDL 111 + V + + I + ++ + + Q Sbjct: 407 EQIANEFLILSKPHTDVFKVHSISRIIEEVKTLLETQAIIKGNDIITSYQYEEELLITCE 466 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +NL A + G + I+V+ S+K G + +I + Sbjct: 467 ETKIKQVFVNLIKNAIEATS-NGHIYITVKKRDQFVEISVKDEGCGI-SDDALARISEPF 524 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + Sbjct: 525 FTTKEKGTGLGLLICDKIIDNHNGTRKIVSKEGIGTTFTITFP 567 >gi|222053257|ref|YP_002535619.1| histidine kinase [Geobacter sp. FRC-32] gi|221562546|gb|ACM18518.1| histidine kinase [Geobacter sp. FRC-32] Length = 603 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 68/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIR 54 + L + + A+ L + H+I +P+ AI +++++ + ++ ++ Sbjct: 363 LESTFDELLVAKKVAAVGQLALGLSHEIRNPLSAIQMNMQMIRKKIDLAGTLRENFAIVD 422 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107 LK + L +I + + V+ + Sbjct: 423 GEIQRLNRLLKDVMDFARPRSLNLQNTELKEIISRLMQLLSQRLEEQLIRTTVRTESPIQ 482 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164 + + ++LLNL + A ++ + + + ++ G + Sbjct: 483 LVCDPEQIHQVLLNLILNAMEAMNETPGERHLTIFARSADGMALVTVSDTGGGIPQGKL- 541 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ D + + V + + + E + L Sbjct: 542 EQLFDPFYTTRASGGGLGLSIVQTIVLRHGGSVAVESQPGQGATFTVALP 591 >gi|90412687|ref|ZP_01220688.1| putative sensor outer membrane protein EnvZ [Photobacterium profundum 3TCK] gi|90326262|gb|EAS42681.1| putative sensor outer membrane protein EnvZ [Photobacterium profundum 3TCK] Length = 441 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 21/207 (10%), Positives = 59/207 (28%), Gaps = 8/207 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 ALL + + HD+ +P+ I + E++ + + + + Sbjct: 232 ALLLAGVSHDLRTPLTRIRLATEMMSPEDSYLADGMTKDTEECNEIISQFMDYLKSTKKP 291 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 +D L ++ + + + G + + + NL + A Sbjct: 292 AMEDIDLNFLLQEVAESEGGYENEVELGLNDIPGRIEANAVAMKRCVANLVVNALRYGNG 351 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVI 187 K++ + + ++ NG + + S + + V Sbjct: 352 WVKISSGTSADRKSAWYCVEDNGPGIQEDQVSRMFQPLTRGDSARGSDAEGTGLGLAIVK 411 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + D + + L Sbjct: 412 RIIDQHDGVITVTNRSDGGLKVQITLP 438 >gi|170078060|ref|YP_001734698.1| two-component sensor histidine kinase [Synechococcus sp. PCC 7002] gi|169885729|gb|ACA99442.1| two-component sensor histidine kinase [Synechococcus sp. PCC 7002] Length = 503 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 69/233 (29%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLI 53 +A+ L ++ + + H++ +PI I LEL+ E + ++L+ Sbjct: 260 LAQAFNSMLDRLETAFENQRQFLNDVGHELRTPITIIRGHLELMAIANLPFEEQKTVELV 319 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108 ++ + L DIE +E+ + S + Sbjct: 320 VDELDRMGRLVQELILLAKLERPNFLHYEPIDIESFLEELYTKITALTSSPRQWQRQGMV 379 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + L+NL A ++ + V + F L+ +G + Sbjct: 380 TGILWGDRQRLTQALINLAQNAVQHTQPHDEICLGVTRTGKNLQFWLQDSGQGIAAADQT 439 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G + + V +A + + + + + Sbjct: 440 RIFERFARGRQVRGTEGSGLGLAIVKQVAIAHGGSITVASELNKGSTFTLTIP 492 >gi|332703597|ref|ZP_08423685.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553746|gb|EGJ50790.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 576 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 64/224 (28%), Gaps = 18/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMS 59 + + L + + H++ +P+ I+ LL + + I + Sbjct: 345 QRLSSIGRLAAGLAHEVNNPLAIINEQAGLLKDLLNRQADGPEKERYSRLADSILAAVKR 404 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE 114 M + + ++ + ++ + D + + + + Sbjct: 405 CRDITHNMLGFARRMELAIEFLSINEVLAETLSFLRKEAESRDIEIILDLDPNLSTIPSD 464 Query: 115 R---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 R ++ LN+ A A++ G++ IS +DS + S++ NG Sbjct: 465 RGQLQQVFLNILNNALAAVSDKGRIQISSKDSGQNVLVSIEDNGCGMPKETLEHIFEPFF 524 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + LL K Sbjct: 525 TTKKGRGTGLGLSITYGIVKRLGGDIDVRSTPGQGTTFTVLLPK 568 >gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 661 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 58/240 (24%), Gaps = 29/240 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S + + + H+I +P+ I +LLD+ + E Q + S + Sbjct: 161 AKEEAERASQAK--SEFLASMSHEIRTPLTTILGMADLLDKTPLGAEQRQYVWASRAAGE 218 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 D L +++ R+ + Sbjct: 219 NLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMALRAHQKGLEFTCRLSWQGS 278 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLAR 159 + + +IL+NL A RG +V+ F + G Sbjct: 279 CLVLGDATRIRQILVNLIGNAIKFTERGKVTVEAVRWPAEESAENTWFGFVVSDTGIGIP 338 Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + L + + + + Sbjct: 339 PDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGGTIRLASREGEGSRFTVEIP 398 >gi|253701112|ref|YP_003022301.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251775962|gb|ACT18543.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 423 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + K L + + A+ L I HD + + A+ +LL ++ I Sbjct: 165 LKKMESQLLHAQKMEAIGTLADGIAHDFNNIMTAVIGYTDLLMTELSPPAPYRGFLENIN 224 Query: 55 LSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ AI L + R T + + I +++ + + + Sbjct: 225 TATHRAITVVKNLLAYSRQEPMQTTRILGNDLIEGIFVLLKRVAGQGIELAWEPAPDTLP 284 Query: 111 LSRE---RAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 + + ++L+NL A ++P+ ++ Sbjct: 285 IMVDQAQMEQVLVNLTANARDAMPQGGTLTITVDAVDLAPHEVQGYDHTRPGPHVRIAVS 344 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ E ++I D + + + + + + + S Sbjct: 345 DTGSGI-DQETQSRIFDPFFTTKEAGNGTGLGLSISYGIVKRHGGFIRVASENGEGTTFS 403 Query: 211 ALLEK 215 LL K Sbjct: 404 ILLPK 408 >gi|94987520|ref|YP_595453.1| Signal transduction histidine kinase [Lawsonia intracellularis PHE/MN1-00] gi|94731769|emb|CAJ55132.1| Signal transduction histidine kinase [Lawsonia intracellularis PHE/MN1-00] Length = 580 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 17/221 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59 L ++ L S + H+I SP+ +I + L + + +MQ I + Sbjct: 355 QKDTLASIGSLASGVAHEIRSPLSSIKGYVNYLGDRLPYDSSDQELIKIIMQEIDRLNRV 414 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRER 115 + Y +D + D ++++ + Sbjct: 415 ISDLIGLSVPTDVYPEYIDLQKVIEDTLRLVKLDAKRHSVELLFYRNEELPFVPLDPDRI 474 Query: 116 AKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++LLNL + A ++P K+ V + + + G E +I D Sbjct: 475 RQVLLNLCLNALDAMPDGGSLKIIFDVNKNTQQFFLEVIDTGMGIN-EEVLPRIFDPYFT 533 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + +K +L + + Sbjct: 534 TKLKGTGLGLSTVRKIVEAHKGTILVSSELGKGTIFRLVFP 574 >gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 637 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 62/235 (26%), Gaps = 22/235 (9%) Query: 1 MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 M ++ + + ++ + + H+I +P+ AI E++ E E + + Sbjct: 264 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 323 Query: 55 LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + ++ + L+ + T + + + ++ + Sbjct: 324 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 383 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + S + ++L N A + G V++ + + G Sbjct: 384 RPSEEIWILTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 442 Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E L Sbjct: 443 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 497 >gi|51595548|ref|YP_069739.1| two component histidine kinase-sensor [Yersinia pseudotuberculosis IP 32953] gi|51588830|emb|CAH20444.1| possible 2-component Histidine kinase-sensor [Yersinia pseudotuberculosis IP 32953] Length = 604 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47 M + L A+ L + + H+I +P+ +I + + E + Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 +++ + + + L +R + V+ + +I + + Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162 + LLNL++ A ++ R G + I++ +++ S+ G R + Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E++ R+ + Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582 >gi|323693798|ref|ZP_08107992.1| hypothetical protein HMPREF9475_02855 [Clostridium symbiosum WAL-14673] gi|323502145|gb|EGB18013.1| hypothetical protein HMPREF9475_02855 [Clostridium symbiosum WAL-14673] Length = 466 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 18/223 (8%), Positives = 63/223 (28%), Gaps = 18/223 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 + + S + H++ +P+ + +E + + ++ + + ++ + Sbjct: 240 ENEKQKRRITSDVAHELRTPLTNLQTHMEAMIDGVWETTTARLESCHAEILRLVGIVEQL 299 Query: 68 R-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + + D ++ + + + Sbjct: 300 QELYLLENKEQAPDKRRFDFRELCMEVFDGFEIKAKEKNIRLLMAMPPKTPIYADYYRLK 359 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173 + ++NL A A P GG + + + + ++ +G + F + + Sbjct: 360 QCMINLISNALAYTPGGGHIAVEYRMREGHVEIKVRDDGPGIPEEDISHLFERFYRVDKS 419 Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + V + L Sbjct: 420 RSKKTGGMGIGLAITKAIVKMHGGEISAENQNGQGAVFTINLP 462 >gi|323484834|ref|ZP_08090190.1| hypothetical protein HMPREF9474_01941 [Clostridium symbiosum WAL-14163] gi|323401830|gb|EGA94172.1| hypothetical protein HMPREF9474_01941 [Clostridium symbiosum WAL-14163] Length = 466 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 18/223 (8%), Positives = 63/223 (28%), Gaps = 18/223 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 + + S + H++ +P+ + +E + + ++ + + ++ + Sbjct: 240 ENEKQKRRITSDVAHELRTPLTNLQTHMEAMIDGVWETTTARLESCHAEILRLVGIVEQL 299 Query: 68 R-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + + D ++ + + + Sbjct: 300 QELYLLENKEQAPDKRRFDFRELCMEVFDGFEIKAKEKNIRLLMAMPPKTPVYADYYRLK 359 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173 + ++NL A A P GG + + + + ++ +G + F + + Sbjct: 360 QCMINLISNALAYTPGGGHIAVEYRMREGHVEIKVRDDGPGIPEEDISHLFERFYRVDKS 419 Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + V + L Sbjct: 420 RSKKTGGMGIGLAITKAIVKMHGGEISAENQNGQGAVFTINLP 462 >gi|301052302|ref|YP_003790513.1| sensor histidine kinase [Bacillus anthracis CI] gi|300374471|gb|ADK03375.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 462 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKENTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|260899677|ref|ZP_05908072.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308109466|gb|EFO47006.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 679 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ ++ E + I Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M A ++ GK+ + +D E + +G Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + D + + + L E S L K Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667 >gi|153837771|ref|ZP_01990438.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810] gi|149748876|gb|EDM59711.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810] Length = 679 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ ++ E + I Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFITDLQA 552 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M A ++ GK+ + +D E + +G Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + D + + + L E S L K Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667 >gi|229056423|ref|ZP_04195836.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603] gi|228720897|gb|EEL72446.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603] Length = 456 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 55/219 (25%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR----------- 63 + + + H++ +P+ + ++ L E ++ ++ + + + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + V+ + + + +++ Sbjct: 296 QMEKHNFFIQVQEVHLHPFLTRITEKINVMYGEKQIKAVFTCPSSLLVKLDEQRFEQVMA 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +K G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 454 >gi|188582930|ref|YP_001926375.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179346428|gb|ACB81840.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 676 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------------GIE 46 + + + S L ++ + + + H+I +PI I +LE+ E + Sbjct: 437 LEETRRQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREALGPAADEVRTEFDLI 496 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 D+ + + + + + A V + + + V D ++ T Sbjct: 497 DQQVHRVNMIVTRLLQFARPDEYAGYVETVVPAEVVTDCLVLVRHLLERADVAIEREDTA 556 Query: 107 EKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160 + ++++NL + A ++P GG + + QD+ + G Sbjct: 557 TRTVEISRTELQQVVINLMVNAIHAMPEGGLLRLKTQDNDYSGREGVAIEVSDTGVGIPA 616 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + L + + + L Sbjct: 617 DRLRKIFDPFFTTRTHGGTGLGLSISYTLIARYGGTITVHSELERGSIFVIWLP 670 >gi|148656428|ref|YP_001276633.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus sp. RS-1] gi|148568538|gb|ABQ90683.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 679 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 21/230 (9%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMS- 59 + L A L + + H+I +P+ +I N L LL + L Sbjct: 446 EAIMRQNERLAASGRLAAAVAHEINTPLQSIQNYLYLLRSSSIEQSTAFLDLASSEITRV 505 Query: 60 --AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLS 112 + RL + + + + + ++ ++V + Sbjct: 506 STLLHRLLDLHRPGDRSIELIDSNAIIERVVLLLGSALRGCSIRVEQELAPDLPRFLGQR 565 Query: 113 RERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++LLNL + A ++P + Q ++ + NG + Sbjct: 566 DALMQVLLNLLLNAIDAMPCGGALRITTRRALETIDQSARWCVQIIVADNGPGI-AFDLQ 624 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + L ++ L + + L Sbjct: 625 ERIFDPFFTTKPHGSGLGLAVSRQLVEQHGGSLRVQSTPGNGATFIVSLP 674 >gi|16611830|gb|AAL27373.1|AF426171_4 HydH [Yersinia pestis] Length = 607 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47 M + L A+ L + + H+I +P+ +I + + E + Sbjct: 355 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 414 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 +++ + + + L +R + V+ + +I + + Sbjct: 415 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 474 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162 + LLNL++ A ++ R G + I++ +++ S+ G R + Sbjct: 475 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 534 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E++ R+ + Sbjct: 535 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 585 >gi|86156725|ref|YP_463510.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773236|gb|ABC80073.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 711 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 26/230 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL 64 M+ V LL I HD + + I ELL E + Q R + L Sbjct: 342 QKMEAVGLLAGGIAHDFNNLLTGILGYAELLGEPGTAADEAAAGIRQAARRGAALTRQLL 401 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 F R VD + ++ +++E + ++ + + ++ + Sbjct: 402 GFARRGKYQQVPVDLHALVREVSELLERTLDKRIAIRHQLAAGTAVVRGDPDQLQQVVLN 461 Query: 125 ---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEKFTQ 166 A ++P GG +T + ++ G + Sbjct: 462 LAVNARDAMPSGGTLTFETAEVELDAEGTRARPGLAPGRHVAITVADTGVGIPAA-VRER 520 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + V + + + E + + LL Sbjct: 521 VFDPFFTTKPAGQGTGMGLAMVYGIVQNHGGWVGFESEEGRGARFTVLLP 570 >gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 60/222 (27%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-- 69 + + H++ +P+ I E L ++ +++I S ++ + Sbjct: 368 FVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLS 427 Query: 70 -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRERAKIL 119 T + + + + +S + ++L Sbjct: 428 QLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRLEQVL 487 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A P GG +T+S ++ S+ G + +I + Sbjct: 488 INLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLP-RIFERFYRVDAARS 546 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + E L K Sbjct: 547 RDEGGTGLGLSIVKHIIQLHGGNITVESEHGKGTTFRFTLRK 588 >gi|255655845|ref|ZP_05401254.1| two-component sensor histidine kinase [Clostridium difficile QCD-23m63] gi|296450876|ref|ZP_06892625.1| sensor histidine kinase KdpD [Clostridium difficile NAP08] gi|296879123|ref|ZP_06903118.1| sensor histidine kinase KdpD [Clostridium difficile NAP07] gi|296260248|gb|EFH07094.1| sensor histidine kinase KdpD [Clostridium difficile NAP08] gi|296429666|gb|EFH15518.1| sensor histidine kinase KdpD [Clostridium difficile NAP07] Length = 900 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 +N + L + L + HD+ +P+ I ++ ELL V Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + +S + ++ V+ +I + A+ Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+NL + K+ I+V + + F + NG E Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + +K ++ E D L K Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVEDNKDKGSTFKFSLPK 897 >gi|149921095|ref|ZP_01909554.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149818099|gb|EDM77556.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 776 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 73/227 (32%), Gaps = 17/227 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L S + A+ L + HD + + I S EL L++ + I ++ Sbjct: 408 EQQLLHSQKIQAIGTLAGGVAHDFNNLLTIITGSTELARLDLEDGLDVGPSLDEIEAAAA 467 Query: 59 SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + + R +V+ + ++ Q++ + +Q++ + L + Sbjct: 468 RASRLTRQLLAFGRKQVLQPVAVELNALVRELAQLLTRVLGEHIHLQLALSEHPCWLLAD 527 Query: 115 RAKILLNLFM---VAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ + A ++P GG T + E + + G PE +I Sbjct: 528 PGQLEQVVMNLAINARDAMPGGGTLTLTTSWTDPPEFEVLLEVADTGTGM-TPEVAARIF 586 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + + ++ + + L + Sbjct: 587 DPFFTTKAMGTGLGLATLHGIVTQSGGSVQVQTAPGEGSRFLVRLPR 633 >gi|169830859|ref|YP_001716841.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169637703|gb|ACA59209.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 855 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 18/237 (7%), Positives = 64/237 (27%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + + + + + + + H+I +P+ +I ELL + +++ Sbjct: 617 EREKSQIQRLASLGQVAAGMAHEIKNPLVSIKTFAELLPEKYENPEFRINFSRIVSQEIE 676 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + G + + + + RV + + L Sbjct: 677 RINNLVTELLGFARPSRLHCEEVNAGALMDEVLLLLSPQLDSQNIRVHRQYDPKVRPLWA 736 Query: 114 ERAKI---LLNLFMVAHASLPRG-------------GKVTISVQDSKNENIFSLKINGNL 157 ++ ++ N+ + ++ G + + + ++ G Sbjct: 737 DKNQLKQAFFNVCLNGIQAMSAGGELRVSILAESGGNQSDKGSAPTGGKVKIVVEDTGVG 796 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + I + ++ + L Sbjct: 797 ISAKE-KDRVFDPFFTTKPEGVGIGLSISHKIVVDHGGTIQIRSRQGEGATFEICLP 852 >gi|329725822|gb|EGG62301.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus 21172] Length = 608 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] Length = 872 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 58/234 (24%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + ++ + + H+I +P+ I E+L + + ++ S+ Sbjct: 370 AKEHAEAANQAK--SIFLANMSHEIRTPLNGIIGMTEILADSHLSAAQKDILNDVDASSH 427 Query: 62 IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + + ++ V V+ + Sbjct: 428 ALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHALKQEVTLHVEFADHVP 487 Query: 108 KID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L+NL A P+G + + + G + Sbjct: 488 NHLELDEFRVKQVLMNLMSNAIKFSPQGNVIMRVSVVEHHGLSIEVADTGVGIAEDKLAE 547 Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + L ++ E + L Sbjct: 548 IFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVESGLGEGSRFTFTLP 601 >gi|282918087|ref|ZP_06325837.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus D139] gi|282318372|gb|EFB48732.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus D139] Length = 608 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|151220230|ref|YP_001331053.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str. Newman] gi|212288553|sp|A6QD58|WALK_STAAE RecName: Full=Sensor protein kinase walK gi|150373030|dbj|BAF66290.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str. Newman] Length = 608 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|119714514|ref|YP_921479.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119535175|gb|ABL79792.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 628 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ L +D + L + + H++ +P+ I +LELL ++ +++ + Sbjct: 389 ERSLVRELQQLDDYRSQLIATLSHELRTPLTVISGNLELLGDLSLDETAQHYQEAMTRGT 448 Query: 61 IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK 108 K + VD + +A +++ + Sbjct: 449 TRMQKVVDDLLLLARVSDPQHPLVQVPVDLNAVTRTTVDLLTAPALAKGLSLRLQHNPRE 508 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L NL A P GG VT++V+ + + + +G ++ Sbjct: 509 HLVPGDPGELDRLLTNLVSNAVKYTPAGGTVTVTVERRGDAAVLEVADDGLGISEEDQVG 568 Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + Sbjct: 569 LFRPFFRTTNPDALREPGTGLGLAIVATIVERHGGEVRVRSRLGVGTTFTVTFP 622 >gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus Mu50] gi|15925724|ref|NP_373257.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus N315] gi|21281748|ref|NP_644834.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus MW2] gi|49484931|ref|YP_042152.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651128|ref|YP_184931.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus COL] gi|82749796|ref|YP_415537.1| two-component sensor histidine kinase [Staphylococcus aureus RF122] gi|87161483|ref|YP_492741.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193842|ref|YP_498627.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266466|ref|YP_001245409.1| multi-sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|150392499|ref|YP_001315174.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1] gi|156978350|ref|YP_001440609.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus Mu3] gi|161508285|ref|YP_001573944.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316857|ref|ZP_04840070.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730419|ref|ZP_04864584.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733820|ref|ZP_04867985.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|254663953|ref|ZP_05143425.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793557|ref|ZP_05642536.1| two-component system sensor histidine kinase [Staphylococcus aureus A9781] gi|258411137|ref|ZP_05681416.1| two-component system sensor histidine kinase [Staphylococcus aureus A9763] gi|258420959|ref|ZP_05683893.1| sensory box histidine kinase [Staphylococcus aureus A9719] gi|258423219|ref|ZP_05686111.1| two-component sensor histidine kinase [Staphylococcus aureus A9635] gi|258438598|ref|ZP_05689821.1| sensory box histidine kinase [Staphylococcus aureus A9299] gi|258443946|ref|ZP_05692284.1| two-component sensor histidine kinase [Staphylococcus aureus A8115] gi|258446238|ref|ZP_05694398.1| two-component sensor histidine kinase [Staphylococcus aureus A6300] gi|258449103|ref|ZP_05697209.1| two-component sensor histidine kinase [Staphylococcus aureus A6224] gi|258451348|ref|ZP_05699379.1| two-component sensor histidine kinase [Staphylococcus aureus A5948] gi|258454419|ref|ZP_05702387.1| two-component sensor histidine kinase [Staphylococcus aureus A5937] gi|262049449|ref|ZP_06022321.1| two-component sensor histidine kinase [Staphylococcus aureus D30] gi|269201709|ref|YP_003280978.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus ED98] gi|282894298|ref|ZP_06302528.1| sensor protein kinase walK [Staphylococcus aureus A8117] gi|282902650|ref|ZP_06310543.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus C160] gi|282920738|ref|ZP_06328457.1| sensor protein kinase walK [Staphylococcus aureus A9765] gi|282921309|ref|ZP_06329027.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus C427] gi|282927769|ref|ZP_06335383.1| sensor protein kinase walK [Staphylococcus aureus A10102] gi|283767809|ref|ZP_06340724.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus H19] gi|284023056|ref|ZP_06377454.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus 132] gi|295406883|ref|ZP_06816687.1| sensor protein kinase walK [Staphylococcus aureus A8819] gi|296276711|ref|ZP_06859218.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus MR1] gi|297209433|ref|ZP_06925831.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245918|ref|ZP_06929780.1| sensor protein kinase walK [Staphylococcus aureus A8796] gi|300911457|ref|ZP_07128906.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70] gi|81650258|sp|Q6GD71|WALK_STAAS RecName: Full=Sensor protein kinase walK gi|81695623|sp|Q5HJX6|WALK_STAAC RecName: Full=Sensor protein kinase walK gi|81704769|sp|Q7A215|WALK_STAAW RecName: Full=Sensor protein kinase walK gi|81704904|sp|Q7A305|WALK_STAAM RecName: Full=Sensor protein kinase walK gi|81706517|sp|Q7A8E0|WALK_STAAN RecName: Full=Sensor protein kinase walK gi|123098092|sp|Q2G2U4|WALK_STAA8 RecName: Full=Sensor protein kinase walK gi|123722426|sp|Q2FKN7|WALK_STAA3 RecName: Full=Sensor protein kinase walK gi|123740988|sp|Q2YUQ2|WALK_STAAB RecName: Full=Sensor protein kinase walK gi|212288550|sp|A7WWQ7|WALK_STAA1 RecName: Full=Sensor protein kinase walK gi|212288551|sp|A6TXG9|WALK_STAA2 RecName: Full=Sensor protein kinase walK gi|212288552|sp|A5INR0|WALK_STAA9 RecName: Full=Sensor protein kinase walK gi|212288554|sp|A8YYU2|WALK_STAAT RecName: Full=Sensor protein kinase walK gi|5114231|gb|AAD40238.1|AF136709_2 histidine kinase YycG [Staphylococcus aureus] gi|13699936|dbj|BAB41235.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus N315] gi|14245786|dbj|BAB56181.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus Mu50] gi|21203183|dbj|BAB93884.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus MW2] gi|49243374|emb|CAG41791.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285314|gb|AAW37408.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus COL] gi|82655327|emb|CAI79707.1| two-component sensor histidine kinase [Staphylococcus aureus RF122] gi|87127457|gb|ABD21971.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201400|gb|ABD29210.1| sensory box histidine kinase VicK, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739535|gb|ABQ47833.1| PAS/PAC sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|149944951|gb|ABR50887.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1] gi|156720485|dbj|BAF76902.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus Mu3] gi|160367094|gb|ABX28065.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725899|gb|EES94628.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728123|gb|EES96852.1| two-component sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|257787529|gb|EEV25869.1| two-component system sensor histidine kinase [Staphylococcus aureus A9781] gi|257840022|gb|EEV64487.1| two-component system sensor histidine kinase [Staphylococcus aureus A9763] gi|257843149|gb|EEV67564.1| sensory box histidine kinase [Staphylococcus aureus A9719] gi|257846548|gb|EEV70570.1| two-component sensor histidine kinase [Staphylococcus aureus A9635] gi|257848157|gb|EEV72149.1| sensory box histidine kinase [Staphylococcus aureus A9299] gi|257850830|gb|EEV74774.1| two-component sensor histidine kinase [Staphylococcus aureus A8115] gi|257855064|gb|EEV78007.1| two-component sensor histidine kinase [Staphylococcus aureus A6300] gi|257857536|gb|EEV80431.1| two-component sensor histidine kinase [Staphylococcus aureus A6224] gi|257860878|gb|EEV83695.1| two-component sensor histidine kinase [Staphylococcus aureus A5948] gi|257863513|gb|EEV86273.1| two-component sensor histidine kinase [Staphylococcus aureus A5937] gi|259162446|gb|EEW47016.1| two-component sensor histidine kinase [Staphylococcus aureus D30] gi|262073999|gb|ACY09972.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus ED98] gi|282315724|gb|EFB46108.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus C427] gi|282590529|gb|EFB95607.1| sensor protein kinase walK [Staphylococcus aureus A10102] gi|282594146|gb|EFB99134.1| sensor protein kinase walK [Staphylococcus aureus A9765] gi|282597109|gb|EFC02068.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp. aureus C160] gi|282763343|gb|EFC03473.1| sensor protein kinase walK [Staphylococcus aureus A8117] gi|283461688|gb|EFC08772.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus H19] gi|283469248|emb|CAQ48459.1| sensor protein YycG [Staphylococcus aureus subsp. aureus ST398] gi|285815746|gb|ADC36233.1| Two-component sensor kinase [Staphylococcus aureus 04-02981] gi|294968348|gb|EFG44373.1| sensor protein kinase walK [Staphylococcus aureus A8819] gi|296885894|gb|EFH24829.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177283|gb|EFH36536.1| sensor protein kinase walK [Staphylococcus aureus A8796] gi|298693341|gb|ADI96563.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus ED133] gi|300887636|gb|EFK82832.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70] gi|302331791|gb|ADL21984.1| multi-sensor signal transduction histidine kinase, WalK [Staphylococcus aureus subsp. aureus JKD6159] gi|312828582|emb|CBX33424.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129562|gb|EFT85554.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus CGS03] gi|315197937|gb|EFU28270.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus CGS01] gi|320141437|gb|EFW33280.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131] gi|320144419|gb|EFW36184.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177] gi|323440406|gb|EGA98119.1| two-component sensor histidine kinase [Staphylococcus aureus O11] gi|323443114|gb|EGB00733.1| two-component sensor histidine kinase [Staphylococcus aureus O46] gi|329731734|gb|EGG68094.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus 21189] gi|329732539|gb|EGG68889.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus 21193] Length = 608 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|228937888|ref|ZP_04100516.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970769|ref|ZP_04131409.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977344|ref|ZP_04137739.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407] gi|228782321|gb|EEM30504.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407] gi|228788894|gb|EEM36833.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821794|gb|EEM67794.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938367|gb|AEA14263.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 463 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes 10403S] Length = 591 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 74/228 (32%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65 ++ + + + H++ +P+ A+ E L + + DE++ + S + + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113 + L+ V + L +++ VIE + + Sbjct: 423 ILALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|219666980|ref|YP_002457415.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfitobacterium hafniense DCB-2] gi|219537240|gb|ACL18979.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfitobacterium hafniense DCB-2] Length = 599 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51 ++ L ++LV + + I H+I +P+ + L+L + + + Sbjct: 365 QQHEMARLERLNLVGQMAAGISHEIRNPLTTVKGFLQLRGIKVTDPDEKEYNDLMISEID 424 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + K + + + + Q + D + ++ Sbjct: 425 RANTIISEFLSLAKDNMGSTQEQDINQIIYRIFPMIQADANNGNKDLILNLNPLPSLWLN 484 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 E ++LLN A P+GG V I + +N + ++K G E +I Sbjct: 485 ENEIRQLLLNFVRNALEVTPQGGCVIIQTYEDRNNVVLAVKDQGCGI-PEEIRDKIGTPF 543 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + +AH + L + D + ++ Sbjct: 544 FTTKESGTGLGIAISMGIAHRHNAELTFD-TGDQGTTFKVIFKR 586 >gi|89897158|ref|YP_520645.1| hypothetical protein DSY4412 [Desulfitobacterium hafniense Y51] gi|89336606|dbj|BAE86201.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 599 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51 ++ L ++LV + + I H+I +P+ + L+L + + + Sbjct: 365 QQHEMARLERLNLVGQMAAGISHEIRNPLTTVKGFLQLRGIKVTDPDEKEYNDLMISEID 424 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + K + + + + Q + D + ++ Sbjct: 425 RANTIISEFLSLAKDNMGSTQEQDINQIIYRIFPMIQADANNGNKDLILNLNPLPSLWLN 484 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 E ++LLN A P+GG V I + +N + ++K G E +I Sbjct: 485 ENEIRQLLLNFVRNALEVTPQGGCVIIQTYEDRNNVVLAVKDQGCGI-PEEIRDKIGTPF 543 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + +AH + L + D + ++ Sbjct: 544 FTTKESGTGLGIAISMGIAHRHNAELTFD-TGDQGTTFKVIFKR 586 >gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1138 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 KNI ++ ++ + + + H++ +P+ +I +LL + + I+ ++ Sbjct: 467 RKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKYAT 526 Query: 58 ----------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------K 98 L ++ G V+ I + + + IE + Sbjct: 527 VIHSAGSDLLHLINELLDLAKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKSINFKT 586 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + ++L NL A GGK+ ++ + + F ++ +G Sbjct: 587 TIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELAYKHVNSNIHFIVQDDGIGI 646 Query: 159 RFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + DG+ + LA R+ E D + +L Sbjct: 647 APEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFIL 706 Query: 214 E 214 Sbjct: 707 P 707 >gi|226314238|ref|YP_002774134.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226097188|dbj|BAH45630.1| probable two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 437 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 20/230 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + S + A+ + + I H++ SP+ AI + +LL + L++ + Sbjct: 190 EAQLIQSAKMAAIGEMAAGIAHELNSPLTAILGNSQLLMREMTDAPEAPLMKDIYQCGVR 249 Query: 63 -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDL 111 L F R + + D+ +I ++V R Sbjct: 250 CKKIIQNLLTFSRQEEYLFSTTSIDEVVEDVLGLIGYQLSVSGLTITREMYEPPLLFHGS 309 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFT 165 + +I++NL + A ++ I +++ + S+ NG + Sbjct: 310 RHQIEQIVINLLLNARDAVAGKEAPHIVIRSFLVQEENSSYVGLSVYDNGTGICEEQLSQ 369 Query: 166 QIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + +L E ++ + LL Sbjct: 370 IFQPFFSTKERTKGTGLGLSVSLGIAEAHGGKLFAESVEGEYSKFTMLLP 419 >gi|153948998|ref|YP_001401784.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758] gi|152960493|gb|ABS47954.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758] Length = 604 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47 M + L A+ L + + H+I +P+ +I + + E + Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 +++ + + + L +R + V+ + +I + + Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162 + LLNL++ A ++ R G + I++ +++ S+ G R + Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGALEIALALVEESKLRISVIDTGKGIRAED 531 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E++ R+ + Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582 >gi|325962315|ref|YP_004240221.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3] gi|323468402|gb|ADX72087.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3] Length = 551 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68 L A S + H+ +P+ +I +E+L ++ ++ + ++ L + Sbjct: 332 LAAKDDFVSSVSHEFRTPLTSILGYVEILLADEPDESQRDMLEIIRRNSERLLTLVSDLL 391 Query: 69 -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILL 120 +VD + + A V + T ++++ + +++L Sbjct: 392 ASRNGQLIVTPQTVDVAELVRSSVSSAQPRAAAAGLVLKADTPDRLEAHVDGARISQVLD 451 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----ST 175 NL A P GG+V +++ + G + + Sbjct: 452 NLVSNAIKYSPGGGRVLVTLAQEDGHLECRVTDTGMGMSPEDASEVFAKFFRASTVRRTA 511 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + Sbjct: 512 IPGVGLGLPISKAIIDAHGGTIAVHSTLGEGTTFTFRVP 550 >gi|328473713|gb|EGF44548.1| sensor histidine kinase [Vibrio parahaemolyticus 10329] Length = 679 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ ++ E + I Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFITDLQA 552 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL M A ++ GK+ + +D E + +G Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + D + + + L E S L K Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667 >gi|326940408|gb|AEA16304.1| sporulation kinase B [Bacillus thuringiensis serovar chinensis CT-43] Length = 419 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTAESRDEYIKHILEE 249 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + + + L + +I ++ + Sbjct: 250 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413 >gi|323703747|ref|ZP_08115386.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531271|gb|EGB21171.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 482 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 62/245 (25%), Gaps = 32/245 (13%) Query: 1 MAKNICFNLSSMDLVALLC------------SRICHDIISPIGAIHNSLELLDE-----V 43 +A++ L ++ + + H++ +P+ +IH LE+L Sbjct: 238 LAESFNGMLERLE-ASFAAERETKEQMRRFIADASHELRTPLTSIHGFLEVLLRGAVNQP 296 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIE-QVIEDFIA 95 + ++ + S + + R + D+E Q+ Sbjct: 297 DQLHKALKSMHGESERLNKLVHDLLLLAKLDRTPHIELTEGLLNTVIRDMEPQLRILSGN 356 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKIN 154 +++ + + + +++LNLF A N S++ N Sbjct: 357 RKLSIEMEPNLKCKYDTDKIKQVILNLFHNAVQHTDPDEGQIKISLVRKNNGVALSVQDN 416 Query: 155 GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + + + + Sbjct: 417 GPGISEDHLNRVFDRFYRIDSSRTRKYGGSGLGLAISKSIVDAHGGTISVTSQVGKGSTF 476 Query: 210 SALLE 214 + L Sbjct: 477 NIWLP 481 >gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 885 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 618 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 676 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724 >gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 315 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I L S + H++ +P+ AI +LE+L DE ++++++ + Sbjct: 79 QDISERHEVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIGVSN 138 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S + + L +G + + L DI +++ + + + + E + + Sbjct: 139 SERLLRLVNNILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLDV 198 Query: 116 A------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL + G KV I S E I ++K G + Sbjct: 199 PNTEILADEETIVQVLTNLLSNSIKFSHSGNKVEIYATVSNKEIIVAVKDYGKGVPPHKL 258 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +++ ++ E I L Sbjct: 259 ETIFERFEQVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVESILGSGSTFYFTLP 314 >gi|229087943|ref|ZP_04220053.1| hypothetical protein bcere0022_44970 [Bacillus cereus Rock3-44] gi|228695356|gb|EEL48231.1| hypothetical protein bcere0022_44970 [Bacillus cereus Rock3-44] Length = 672 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEENTYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 SNSIITEFLSMGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDISELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|77919589|ref|YP_357404.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77545672|gb|ABA89234.1| signal transduction histidine kinase, nitrogen specific, NtrB [Pelobacter carbinolicus DSM 2380] Length = 366 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 60/231 (25%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 + L L L + + H+I +P+G I + +LL+ D ++ + R+ + Sbjct: 133 QADRLAMLGTLAAGLAHEIKNPLGGIKGAAQLLNLELPPDNPLREYTRVMTREVNRVNDL 192 Query: 68 RLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 I I + + + + + Sbjct: 193 IEELLDLTRPRPTQLGEVNLSRILADQILMQKQGHPDKQITYHMQLDPSIPPIRGDENLL 252 Query: 119 LLNLF---MVAHASLPRGGKVTISVQDSKN------------ENIFSLKINGNLARFPEK 163 A ++ G +T++ + + ++ NG E Sbjct: 253 SRLFLNLLKNAAEAIEGEGTITVTSRIAGQYLYNKPGERPVPMVTVEIQDNGPGIPPDEL 312 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + +E++ L + L Sbjct: 313 -DRIFTPFFTTKTKGCGLGLAICQKIINEHQGSLRVSSQAGQGTSFTISLP 362 >gi|258516550|ref|YP_003192772.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] gi|257780255|gb|ACV64149.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] Length = 556 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 13/221 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M K I L ++LV + + I H+I +P+ + L+LL + + L Sbjct: 322 MEKEIA-RLDKLNLVGEMAAGIGHEIRNPMTTVRGFLQLLASKEECVKYKEYYDLMIEEL 380 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L + + Q D ++++ + I Sbjct: 381 DRANSIITEYLSLAKNKPVSLRMVNLNSILATIFPLIQADVLKRNNDVKMEIKDVPDLIL 440 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 E +++LNL + ++P GG +TI K+ + ++ G+ E +I Sbjct: 441 DENEIRQLILNLVRNSLEAMPLGGNLTIKTFQDKDFVVLEVQDEGSGIPL-ELLDKIGTP 499 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + +A + + D V S Sbjct: 500 FFTTKDEGTGLGLAVCFSIAARHNASIEV-NTDSSGTVFSV 539 >gi|228939760|ref|ZP_04102340.1| hypothetical protein bthur0008_24140 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972642|ref|ZP_04133244.1| hypothetical protein bthur0003_24110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979231|ref|ZP_04139572.1| hypothetical protein bthur0002_24150 [Bacillus thuringiensis Bt407] gi|228780507|gb|EEM28733.1| hypothetical protein bthur0002_24150 [Bacillus thuringiensis Bt407] gi|228787083|gb|EEM35060.1| hypothetical protein bthur0003_24110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819919|gb|EEM65964.1| hypothetical protein bthur0008_24140 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 360 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTAESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + + + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|89896508|ref|YP_519995.1| hypothetical protein DSY3762 [Desulfitobacterium hafniense Y51] gi|89335956|dbj|BAE85551.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 473 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSM 58 + I + L + L + HD+ +P+ A+ + LL + + + + L S Sbjct: 236 REEIRVAMERERLRSTLLRSVAHDLRTPLTALTGASSLLTDKFEQLSLEEQKKLAADISE 295 Query: 59 SAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 I F+ + + + + I ++ ++VS E Sbjct: 296 EMIWLANFVENILNMTRIGEGQLFLHKEDEVVDDVVNEATSHMSRILQNRHLEVSLPNEV 355 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I L + ++L+NL A P + + V N+ +F + NGN + Sbjct: 356 ISLPMDGKLVVQVLVNLLDNAVKHTPLESCIDLKVGILGNDVVFEVCDNGNGI-AEDIMN 414 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ DG + + + + E L Sbjct: 415 RLFDGFTTPKNNIIDGKRGMGLGLAICKAIVEAHGGAIRAENQPAGGARFVFSLP 469 >gi|119714461|ref|YP_921426.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119535122|gb|ABL79739.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 549 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 74/233 (31%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60 A +I + ++ + + + H++ +P+ +I + LL++ + + + +R+ +A Sbjct: 311 ATDITELMRALAVKEEFVATVSHELRTPLTSIVGYVAILLEDDTLSAQAVAQLRVVDRNA 370 Query: 61 IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 ++ A G V D+ ++ + ++ E R+ Sbjct: 371 ARLTALVEALLQEAHHADGPVPLEREEVDLARIARASVDAAAPTALAEGVEIECDLRDPV 430 Query: 117 ----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ NL A PRGG+ +S + ++ NG E+ Sbjct: 431 LVVADPQLLAQVVDNLVSNAIKYTPRGGRARVSARRDGERVELTVADNGIGISEAERGQL 490 Query: 167 IVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + ++ + V L Sbjct: 491 FTRFFRTRAATESAIQGVGLGLSIAKAIVESHGGQIEVDSEAGRGSVFRVWLP 543 >gi|290892663|ref|ZP_06555655.1| histidine kinase [Listeria monocytogenes FSL J2-071] gi|290557723|gb|EFD91245.1| histidine kinase [Listeria monocytogenes FSL J2-071] Length = 591 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 68/228 (29%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSR 113 + VD + + I + + Sbjct: 423 ILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSGSVMIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +I++NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|298529348|ref|ZP_07016751.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510784|gb|EFI34687.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 506 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 19/229 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 M K + S L A+ L + I H+I +P+ AI +L ++ + + Sbjct: 272 MEKRLQ---QSEKLAAIGELSTYIAHEIRNPLFAIGGFANAVLRNPDLDAVSRDKVNIIL 328 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116 + + ++ + + + D+ V+++ + + Sbjct: 329 QESKRLDRILKSIINFARPTEPVQQEVDVNGVVQEVMQLFNLTCKEQDVSIEMEMPPNMA 388 Query: 117 ----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++NL A ++P GG + + + + G E + Sbjct: 389 KARGDPELLKQCIINLVKNALEAMPEGGTLGLETFVEWEFVVIEVSDTGKGI-SKEIRDK 447 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ ++ ++ L Sbjct: 448 IFNPFYSTKENSGAGLGLAMTKKILDDMGGKIDVLSLEGQGTSITIRLP 496 >gi|206969170|ref|ZP_03230125.1| sensor histidine kinase [Bacillus cereus AH1134] gi|206736211|gb|EDZ53369.1| sensor histidine kinase [Bacillus cereus AH1134] Length = 458 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 458 >gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 1039 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 28/231 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I +++L + E + + I S+ ++ L Sbjct: 784 ERMKSEFVAMVSHELRTPLTSIKGYVDMLLDGDAGPLADEHQELLRIVKSNADRLLLLIN 843 Query: 67 MRLAFG---------YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKID------ 110 L + +D + + + A +R+ + D Sbjct: 844 DLLDMSRIEAGKLSLHRIPLDLRPLIRQVAATMRPHLDAKQQRLTLDLPETPPDGSAPLI 903 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +IL NL A P G++TI + +++ G E+ Sbjct: 904 AGDAARFHQILTNLLSNAIKYTPPNGEMTIRLTAEPPWLCITVQDTGIGMTPEEQDHIFD 963 Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + R+ E + Sbjct: 964 RFYRARNRATRETGGTGLGLAITRSLVELHDGRITVESQPGKGSTFRVYVP 1014 >gi|251781984|ref|YP_002996286.1| two-component sensor histidine kinase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390613|dbj|BAH81072.1| two-component sensor histidine kinase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 450 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 66/224 (29%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L S + H++ +P+ ++ + LE LDE I +++ + + + + Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGAIKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------------QVSWTGEKIDLSRER 115 V L I + + + + Sbjct: 271 IDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQQTGTGKVYEIVRDYPITSVWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434 >gi|126652336|ref|ZP_01724512.1| Two component system histidine kinase [Bacillus sp. B14905] gi|126590911|gb|EAZ85024.1| Two component system histidine kinase [Bacillus sp. B14905] Length = 452 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 66/232 (28%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 + + ++L ++ + S + H++ SP+ +I L + ++ + +I + Sbjct: 217 EEMAYDLQQLEQMRKEFVSNVSHEVQSPLTSISGYALALKQVDLTDEEKNRYLDIIMAEA 276 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + I + ++A + + Sbjct: 277 QRMSKMSDSLLKLSLLESKAPPMQPVSLSLDEQIRRVIVAIQPQWMAKNIHFNLQLQSMY 336 Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + ++ ++ NL + G + IS+ + + + G + F Sbjct: 337 VMADYDQLNQVWTNLLTNSIKFSKDGDTIKISMSQEAHHVLVRITDTGIGISQEDQKRVF 396 Query: 165 TQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + +K + E L Sbjct: 397 ERFFKADRSHSPKYEGSGMGLAIVKQIVSLHKGDVRVESELGQGTTFIVTLP 448 >gi|85858812|ref|YP_461014.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721903|gb|ABC76846.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 415 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQL 52 K S AL + + I H+I +P+G+I LL + ++ Sbjct: 166 EKLESMAKRSEKFTALGEMAANIAHEIRNPLGSIELYASLLMKESKNDRDQNRISRIISS 225 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEK 108 ++ L F + + L +I E I + + Sbjct: 226 VKKMDNKISNLLLFTKNRKLILKRISLHHFLNEILGSCEPLIDQEKIFINTTYADYEPWI 285 Query: 109 IDLSRERAKILLNLFMV----------AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++ NL + ++ ++ ++ +G Sbjct: 286 EGDAEMLKQVFFNLILNALQSLDPEGGTIDFETICPHSGQDMETDESYIEVKIRDSGIGI 345 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + V + ++ + E ++ V LL Sbjct: 346 -PREYLNRIFDPFFTTKEEESGLGLTIVHNIIEMHRGVIHVESVEQEGTVFHVLLP 400 >gi|330505538|ref|YP_004382407.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919824|gb|AEB60655.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 962 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 63/237 (26%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54 M ++ + + + S + H++ +P+ AI SL L++ + ++ + + Sbjct: 472 MDQSEAKRIERLK--SEFVSTVSHELRTPLTAIAGSLGLINGGALGPVPEGMRTMLSIAQ 529 Query: 55 LSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 +S + + + L D + + + Sbjct: 530 ANSQRLSHLINDLLDMDKLEAGKMQFDLQPCPLVAQLQDALDSNQAYADRQQIQLRLLDC 589 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++L N A P G +V + + + G E Sbjct: 590 PPARVRIDAIRLQQVLANFISNAVKYSPPGAEVHLRAERRDTRVRVEVIDQGPGI-AGEF 648 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + L ++ + ++ L Sbjct: 649 RQRIFSKFSQADASDSRSKGGTGLGLAISKELIERMGGQIGFDSVEGQGACFWFELP 705 >gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] Length = 914 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 20/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 + + M + L S + H++ +P+ ++ ELL + +++ + I ++ Sbjct: 570 TREYEVDQMK--SELVSTVSHELRTPLSSVLGFTELLLTKNIKPERQNKYIDTIHREAVR 627 Query: 60 AIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + I + + + + + Sbjct: 628 LTNLINDFLDLQRMESGKQQYNMETLQLNEIAFEIVNRFRHEQKHNVHLIDKAREVYVNA 687 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ +NL A P+GG V I +++ N S+K G + Sbjct: 688 DQDRLVQLFINLIGNAIKFSPQGGDVEILLENKNNSIQVSIKDEGIGISKQDIAQLFQKF 747 Query: 171 -----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + +++ + E + + L Sbjct: 748 KRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLP 796 >gi|284802938|ref|YP_003414803.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5578] gi|284996079|ref|YP_003417847.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5923] gi|284058500|gb|ADB69441.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5578] gi|284061546|gb|ADB72485.1| two-component sensor histidine kinase [Listeria monocytogenes 08-5923] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65 ++ + + + H++ +P+ A+ E L + + DE++ + S + + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113 + L+ V + L ++++VIE + + Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|255029104|ref|ZP_05301055.1| two-component sensor histidine kinase [Listeria monocytogenes LO28] Length = 581 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65 ++ + + + H++ +P+ A+ E L + + DE++ + S + + Sbjct: 344 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 403 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113 + L+ V + L ++++VIE + + Sbjct: 404 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 463 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 464 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 522 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 523 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 570 >gi|255025954|ref|ZP_05297940.1| two-component sensor histidine kinase [Listeria monocytogenes FSL J2-003] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65 ++ + + + H++ +P+ A+ E L + + DE++ + S + + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113 + L+ V + L ++++VIE + + Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|158425662|ref|YP_001526954.1| periplasmic sensor signal transduction histidine kinase [Azorhizobium caulinodans ORS 571] gi|158332551|dbj|BAF90036.1| periplasmic sensor signal transduction histidine kinase [Azorhizobium caulinodans ORS 571] Length = 453 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 66/238 (27%), Gaps = 28/238 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 +++ S + A + H++ +P+ ++ +E L ++ + + ++ + Sbjct: 202 RDLTAQRRSEQMRADFVANASHELRTPLASLSGFIETLLGPAKNDAAARERFLGIMGAQA 261 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108 + + +V + + + G Sbjct: 262 RRMSRLIDDLLSLSRIELNVHVRPDTVVDLCGILSHVRDTLGPLAQDRAITITLETDGSA 321 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFP 161 + + +R +++ + +L GG + S++ G P Sbjct: 322 MPVRGDRDELIRLFENLVENALKYGGTGQNVDVRIAREPGTQGDVAAVSVRDYGPGI-AP 380 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E ++ + + V + ++ RL+ E + L Sbjct: 381 EHLPRLTERFYRVDVAASRDQGGTGLGLAIVKHIVARHRGRLMVESTPGKGATFTVRL 438 >gi|16804538|ref|NP_466023.1| two-component sensor histidine kinase [Listeria monocytogenes EGD-e] gi|47096093|ref|ZP_00233694.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|224499856|ref|ZP_03668205.1| two-component sensor histidine kinase [Listeria monocytogenes Finland 1988] gi|224503259|ref|ZP_03671566.1| two-component sensor histidine kinase [Listeria monocytogenes FSL R2-561] gi|254900362|ref|ZP_05260286.1| two-component sensor histidine kinase [Listeria monocytogenes J0161] gi|254913399|ref|ZP_05263411.1| two-component sensor histidine kinase [Listeria monocytogenes J2818] gi|254937780|ref|ZP_05269477.1| two-component sensor histidine kinase [Listeria monocytogenes F6900] gi|16411988|emb|CAD00578.1| two-component sensor histidine kinase [Listeria monocytogenes EGD-e] gi|47015554|gb|EAL06486.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|258610383|gb|EEW22991.1| two-component sensor histidine kinase [Listeria monocytogenes F6900] gi|293591405|gb|EFF99739.1| two-component sensor histidine kinase [Listeria monocytogenes J2818] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65 ++ + + + H++ +P+ A+ E L + + DE++ + S + + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113 + L+ V + L ++++VIE + + Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 820 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 553 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 611 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 659 >gi|73749306|ref|YP_308545.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73661022|emb|CAI83629.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 852 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 +N + L A+ + + I H+I +P+ + ELL D +Q+I Sbjct: 472 ENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIGFSELLAAREDLPEDIMADLQVI 531 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWT 105 S + ++ + V + + + V + R Sbjct: 532 NHGSQRVVEIVRRLLTFARQNKPVKTRLNVHELIDNTLEFRSYVFKTANIEVIRKYDQNL 591 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + ++ LNL + A ++ + TI+ + + +G PE Sbjct: 592 PWITADPGQLQQVFLNLVINAEQAMRKAHDGGKLTITTTREDSFFSICIADDGPGM-TPE 650 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + D + + + ++ + E + L Sbjct: 651 VKAKIFQPFFTTKGPKDGTGLGLSLAMAIILDHHGTIEVESEYGRGTAFTINLP 704 >gi|260578370|ref|ZP_05846284.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734] gi|258603392|gb|EEW16655.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734] Length = 486 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 17/209 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---------IRLKFMRLAFGY 73 H++ +P+ ++ EL +D M + R+S + ++ Sbjct: 272 SHELRTPLTSVRGYAELYQSGATDDAPMVIDRISEEAGRMSLLVEDLLALVRMDEGRPLA 331 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASL 130 VD L + + + V+ TG+ + + ++L NL A Sbjct: 332 KNRVDMLELVLETAESARAGFPNRTVQVVNETGDVPIVIGDVNRLHQVLGNLVTNALRHA 391 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHDIQFYY 185 +V + + I ++ NG + F + +V + + Sbjct: 392 GEDAEVKLRLDKRDGHVIVDVEDNGRGIPAEDVPHLFERFYRPDVSRSRASGGSGLGLSI 451 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V L + + + + L Sbjct: 452 VKGLVEAHGGTVSVDSEEGQGTRFRIDLP 480 >gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 607 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ + + LE L + I + + + + I + + Sbjct: 380 FVSNVSHELRTPLTTMRSYLEALAEGAWQDEEIAPRFLSVTQDETERMIRLVNDLLQLSK 439 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKILLN 121 + + ++ ++ V + ++L N Sbjct: 440 MDSKDYRFNKEWIEFVGFFHQIIDRFEMSKNQNVTFKRQLPKTALFVEIDKDKLTQVLDN 499 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P GG + +V + + S+ G F + + + Sbjct: 500 IISNALKYSPEGGLIAFNVVEKDKMIVVSVSDQGLGIPQDNLSKIFERFYRVDKARSRQM 559 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + +S L Sbjct: 560 GGTGLGLAIAKEMISAHGGNIWAESKEGKGTTISFSLP 597 >gi|94271664|ref|ZP_01291992.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93450380|gb|EAT01592.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 378 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------Q 51 K + + + +VA+ + + + H+I +P+G I L+L + V+ + Sbjct: 122 EKELAEKIRHTEKMVAMGQMTAGLAHEINNPLGVILCYLDLAKRQATDPLVLGDLEIIEK 181 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107 R L F R + + + ++ ++ A V Sbjct: 182 QTRGCKKIVGDLLAFARGGESHKKLQELAPIIKEVVDMVAPQFAKQGVVIDLSLAGELPP 241 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKF 164 + + + ++ LNL M A ++P G ++ ++ NG E Sbjct: 242 LLLDNNKLKQVFLNLLMNACQAMPPKGGRIEIKAVLESPAGRVRVWVRDNGEGIAAAEV- 300 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E+ + E L Sbjct: 301 ERIFEPFFSTKATGEGTGLGLAVSYGIIKEHGGDIEVESRLGEGSCFIIDLP 352 >gi|68535407|ref|YP_250112.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium K411] gi|68263006|emb|CAI36494.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium K411] Length = 536 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 17/209 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---------IRLKFMRLAFGY 73 H++ +P+ ++ EL +D M + R+S + ++ Sbjct: 325 SHELRTPLTSVRGYAELYQSGATDDAPMVIDRISEEAGRMSLLVEDLLALVRMDEGRPLA 384 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASL 130 VD L + + + V+ TG+ + + ++L NL A Sbjct: 385 KNRVDMLELVLETAESARAGFPNRTVQVVNETGDVPIVIGDVNRLHQVLGNLVTNALRHA 444 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHDIQFYY 185 +V + + I ++ NG + F + +V + + Sbjct: 445 GEDAEVKLRLDKRDGHVIVDVEDNGRGIPAEDVPHLFERFYRPDVSRSRASGGSGLGLSI 504 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V L + + + + L Sbjct: 505 VKGLVEAHGGTVSVDSEEGQGTRFRIDLP 533 >gi|219667637|ref|YP_002458072.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219537897|gb|ACL19636.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 473 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSM 58 + I + L + L + HD+ +P+ A+ + LL + + + + L S Sbjct: 236 REEIRVAMERERLRSTLLRSVAHDLRTPLTALTGASSLLTDKFEQLSLEEQKKLAADISE 295 Query: 59 SAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 I F+ + + + + I ++ ++VS E Sbjct: 296 EMIWLANFVENILNMTRIGEGQLFLHKEDEVVDDVVNEATSHMSRILQNRHLEVSLPNEV 355 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I L + ++L+NL A P + + V N+ +F + NGN + Sbjct: 356 ISLPMDGKLVVQVLVNLLDNAVKHTPLDSCIDLKVGILGNDVVFEVCDNGNGI-AEDIMN 414 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ DG + + + + E L Sbjct: 415 RLFDGFTTPKNNIIDGKRGMGLGLAICKAIVEAHGGAIRAENQPAGGARFVFSLP 469 >gi|320354562|ref|YP_004195901.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123064|gb|ADW18610.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 571 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 30/240 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------L 52 M + + + + A+ L + I HD +P+ AI S ++L E + L Sbjct: 329 MERQMR---EAEKMAAIGELSASIAHDFRNPLAAISGSAQILAMEHNPLETLDATTFKTL 385 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------DKRVQ 101 + + S + K + + D +V+++ IA + R + Sbjct: 386 VAIISRESNRMAKTITDFLQFARPAPIQPEWFDFNRVVDEVIAHLSAGTKTAAVTEIRKE 445 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-------KVTISVQDSKNENIFSLKIN 154 ++ + ++ IL +L A +++ D + ++ Sbjct: 446 IAEHLDCWADRQQMQTILGHLLENASSAMGASPGSIVIAAHDNDRTGDGQGSLWVEIRDQ 505 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G PE ++ S D + V + + + + ++ Sbjct: 506 GPGI-PPELRDKVFTPFFSSRTDGTGLGLSIVRQIVENHCGTVEIDSATPQGCIVRLRFP 564 >gi|308274435|emb|CBX31034.1| hypothetical protein N47_E45460 [uncultured Desulfobacterium sp.] Length = 492 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 64/232 (27%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQL 52 + K L S + +L L + + H + +P+ +I +L L+E D Sbjct: 251 LEKAQIQILQSEKMASLGKLAAGVAHQLNNPLSSITLFTQLVLEEYNLEEGARNDLTRIF 310 Query: 53 IRLSSMSA--IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKI 109 L+F R S D + + E+ + +++ + Sbjct: 311 KEAQRCRDTVKELLEFARQTRHEMRSHDINTAISRTLFLFENQTLFHNIKIEKDLSPSLP 370 Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ + ++ + + + K+ + + G Sbjct: 371 EVYGDIQQLNHVFMNIILNAADAMEGKGKLTIKSYRHPEKDIVVVEISDTGQGIPEN-IL 429 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + +K ++ + + D L Sbjct: 430 PHIFEPFFTTKEQGKGTGLGLSLAYSILDNHKGKIYAKSVKDKGTTFVIELP 481 >gi|270307577|ref|YP_003329635.1| sensor histidine kinase [Dehalococcoides sp. VS] gi|270153469|gb|ACZ61307.1| sensor histidine kinase [Dehalococcoides sp. VS] Length = 1062 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 75/231 (32%), Gaps = 19/231 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K I L + + ++ L S + H+I +P+ I ELL +E+ + + ++ Sbjct: 815 RKQIEQQLIMTDRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDVQTIHR 874 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKID 110 A+ L F R + D + + + ++ + ++ + + Sbjct: 875 EALRAAEVVRNLLTFARQQPPTRKAGDINLSIHKVLELRKHDHRINNIRCITELDPDLPR 934 Query: 111 LSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +I L + + L ++ I I S+ NG PE Sbjct: 935 VMLDFFQIQQVLINIIINAEFFLRLKEHPQIIIKTSQHNKHVIISISDNGPGI-SPENIK 993 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + E+ R+ E + L Sbjct: 994 RIFDPFFTTKEVGKGTGLGLSICHGIIEEHNGRISVESTPRNGTTFRIELP 1044 >gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 810 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 17/226 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E +E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRNERQEYIKIVQENNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +VD +I + + ++ + + Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKVSKGVELIFEEPFPECY 697 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + +++ N A +G Q S + F ++ G ++ + Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 757 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + + + Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGIGSCFWFT 803 >gi|229194709|ref|ZP_04321502.1| hypothetical protein bcere0001_2960 [Bacillus cereus m1293] gi|228588812|gb|EEK46837.1| hypothetical protein bcere0001_2960 [Bacillus cereus m1293] Length = 674 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 448 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 507 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 508 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 567 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 568 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 626 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 627 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 663 >gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] Length = 889 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A S + + + H+I +P+ I +L+LL E + D+ ++ + S Sbjct: 517 LAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQPMNDKSTDYLKKALYST 576 Query: 61 IIRLKFMRLAFGYT----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++ V L L + A +K + + + Sbjct: 577 RSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQEKNIYLKFKSTIHH 636 Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ LN+ A +GG + + G Sbjct: 637 KYWRGDAVRIRQVFLNIIYNAIKFTHKGGVTVEFKLTDDEQVCAIVSDTGIGIPKN-VVN 695 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + + L Sbjct: 696 RLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKVTSEEGVGSQFYVYLP 750 >gi|49476786|ref|YP_034653.1| sensor histidine kinase; sporulation kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328342|gb|AAT58988.1| sensor histidine kinase; possible sporulation kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 677 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 451 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 510 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 511 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 570 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 571 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 629 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 630 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 666 >gi|52144913|ref|YP_081916.1| sensor histidine kinase (sporulation kinase), C-terminal region [Bacillus cereus E33L] gi|51978382|gb|AAU19932.1| sensor histidine kinase (sporulation kinase), C-terminal region [Bacillus cereus E33L] Length = 677 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ I L+LL E ++ + Sbjct: 451 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 510 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 511 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 570 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 571 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 629 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 630 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 666 >gi|323701747|ref|ZP_08113418.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] gi|323533283|gb|EGB23151.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] Length = 404 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 + + M ++ L + H+I +P+ ++ +++L I + + Sbjct: 168 LQEKQFTQREKMVMIGELAAGTAHEIRNPLTSVRGLIQVLGNRFSQGDPAREHISMMLAE 227 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110 + +++ + + L R + + + I + V + + + ++ Sbjct: 228 IDQINYIIKELLLLARRTSPNLSFASLPAILDHVLLLVEGECLGRGISIIKNYDNSLPLA 287 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ L+L A ++P GG++T+ S S N + + K G + Sbjct: 288 VLDEDQMKQVFLHLVTNAIHAMPTGGELTVAASYISSDNVIVVTFKDTGLGIPEKNLT-R 346 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + +L + + L Sbjct: 347 IFHPFFTTRPEGTGLGLPVSFQIIDNHGGKLSVQSTVGQGSTFTVTLP 394 >gi|298244001|ref|ZP_06967808.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297557055|gb|EFH90919.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 571 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 61/234 (26%), Gaps = 23/234 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSS 57 +I + + S + H++ +PI I L G L + Sbjct: 328 DITLEREQEEQRSTFISVVSHELQTPIAIIKGYASTLARAGSRLAPQALQTRLVAIEEEA 387 Query: 58 MSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + ++ + + ++ + + Sbjct: 388 DRLNKLVGNLLYASRIQANGLQMEIAPLDLEPLIETVVRRLKIRYADLQATLEISPDLPS 447 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 D ++L NL A K+TIS + + NE I S++ G ++ Sbjct: 448 VMADRE-RIEEVLQNLLDNAIKYSSGQLKITISARATSNEVIVSVRDTGMGISLRDQEQI 506 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + Y + + R+ E S L + Sbjct: 507 FKRFRRIGNPLAQSTPGTGLGLYICRAIVEAHGGRIWVESTLRQGSTFSFSLPR 560 >gi|229160973|ref|ZP_04288962.1| hypothetical protein bcere0009_17620 [Bacillus cereus R309803] gi|228622541|gb|EEK79378.1| hypothetical protein bcere0009_17620 [Bacillus cereus R309803] Length = 346 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 72/234 (30%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 112 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 168 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + DK +++ EK+ Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPEKVTYRLDQQLKQIVLNSEPLWADKEIELDLDLEKV 228 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +Q+ + + +G + Sbjct: 229 HITADQESMSQVWINLIHNSIKFTPSGGTITIQLQEHEKFVEIRIHDSGIGISEEQKQHI 288 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + K Sbjct: 289 FERFYKADSSRNRTYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIPK 342 >gi|218887079|ref|YP_002436400.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758033|gb|ACL08932.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 566 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 27/232 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM------------ 50 + S + AL L + + H++ +P+ I + +LL E Sbjct: 321 MQSSKMAALGKLAAGVAHEVNNPLMLIRENAGWIRDLLSEEDAARMGHHAEIEEAAVKIE 380 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 Q + + L F R V + + + + + + E Sbjct: 381 QHVDRAKGITHRMLGFGRRMEPMQEDVPLNVLTEQTVKFLESEALHRSITIHKDFDAELP 440 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKF 164 ++ + A++ + V ++ G+ + E ++ G PE Sbjct: 441 AITTDTAQVQQVILNVLDNAIDAVGQGGSITVRTGATEGGQEVFVAVTDTGGGI-APEVL 499 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + + R++ E + + L Sbjct: 500 EHIFDPFYTTKKAGEGTGLGLAICYSIMEKLGGRIVAESTPGNGATFTVYLP 551 >gi|220933231|ref|YP_002512130.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219994541|gb|ACL71143.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 655 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 18/229 (7%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----L 55 + L S L ++ + + I H++ +P+ I + +L+ +D+ Sbjct: 420 QAQRMLLQSAKLASIGEMAAGIGHELNNPLNNILSLAKLIRRELPDDDPRAREDLRALTD 479 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEK 108 + A + + I + V R++V Sbjct: 480 EAERATRIVNGILNFARQVPPHYVPIDVRPWLEETLILVNQSARDQQVSVRLEVEEGLVM 539 Query: 109 IDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L+NL + A + V ++ D E + G PE ++ Sbjct: 540 EGDVNQLRQVLINLLLNAIQASQAGDEVVIMARHDPDGEVNVCVCDQGCGI-KPEVQDRM 598 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + ++ L + V + L Sbjct: 599 FDPFFTTKPVGKGSGLGLSISLGIVEQHGGNLDIRPNERGGVTATVRLP 647 >gi|313676805|ref|YP_004054801.1| histidine kinase [Marivirga tractuosa DSM 4126] gi|312943503|gb|ADR22693.1| histidine kinase [Marivirga tractuosa DSM 4126] Length = 364 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 68/230 (29%), Gaps = 18/230 (7%) Query: 2 AKNICFN----LSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----M 50 +N + L + + I H++ +P+ +I +L+ + + + Sbjct: 131 RQNEELMERKFRHNDRLAILGQISAGIAHELNTPLTSILGFAQLIQKSDKNIQDDIEKII 190 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106 + + F ++ + D ++++ S Sbjct: 191 NSTLHAREIVKNLMFFACEMPQQIRAISINSLMEDSLKLLKPSFQNAEVSLNLQLSSEDI 250 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ NL + A + P GG + + ++ N+ NG + + Sbjct: 251 VVKLDPIQITQVIFNLVINAIQATPPGGYIIVKLRKEDNQLKMYFIDNGKGM-SSQINDR 309 Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + V + ++ + ++ L Sbjct: 310 IFEPFFTTKPEGEGSGLGLSVVHGIIKKHNGTINFSSEEEGGTTFIVSLP 359 >gi|302343587|ref|YP_003808116.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640200|gb|ADK85522.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 510 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50 +++ + S L L L + + H++ +P+ I EL+ E ++ Sbjct: 257 LSEARLQVVQSDKLARLGQLAAGVAHELNNPLTGITIYAELVKESLPPDSPLQDDMTNIV 316 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109 + + L + R +D + D + +D + + V + + Sbjct: 317 EDAQRCRDIVKDLLDYSRQTTVRVEDLDLNQVIEDAFNLIRDDALFLHVDVVRDYHKGPL 376 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFT 165 L + ++ +NL A ++ G++T+ + + G PE Sbjct: 377 TLEGDEKLLRQVFINLLSNAIDAMAGRGRLTVRTGLDGQGMRWAEISDTGPGI-APEHLD 435 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + + + + L Sbjct: 436 RIFDPFFTTKAPGKGTGLGLSVVYGVVSRAGGAVEVKNTGPNGTTFKVSLP 486 >gi|237720759|ref|ZP_04551240.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] gi|229449594|gb|EEO55385.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] Length = 254 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 16 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 73 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ + + + + V K V Sbjct: 74 NSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPEIEIKAVLPDD 133 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ N A + ++ + ++ G Sbjct: 134 DIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQEC 193 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L Sbjct: 194 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLP 246 >gi|217963398|ref|YP_002349076.1| histidine kinase [Listeria monocytogenes HCC23] gi|217332668|gb|ACK38462.1| histidine kinase [Listeria monocytogenes HCC23] gi|307572027|emb|CAR85206.1| two-component sensor histidine kinase [Listeria monocytogenes L99] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSR 113 + VD + + I + Sbjct: 423 ILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +I++NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|251799423|ref|YP_003014154.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247547049|gb|ACT04068.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 459 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 67/234 (28%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+K + + S + H+I SP+ +I +L E + E + + Sbjct: 227 MSKELE-RVDQTRQ--QFVSNVSHEIQSPLTSIQGFAAVLREQELPSEERKHYADIIEAE 283 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 L + S++ + + + W E+ DL + Sbjct: 284 SRHLSILSKQLLLLSSLEQGEEALNKKHFSLYKHIRQAVQVLQWQLEEKDLLLKLSVPDS 343 Query: 116 ----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 ++ +NL A +P G + + + + ++ + + G Sbjct: 344 IAIYGDEVLLQQVWMNLLGNAINYIPPGRSIEVLAEKTLSDIVIVVSDTGEGIPPEHIPF 403 Query: 164 -FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + R+ E ++ L Sbjct: 404 LFDRFYRVDRARERTSGRTGLGLAIVKKIVQLHGGRIEVESSPGAGTRITVSLP 457 >gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185] gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185] Length = 902 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 55/230 (23%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ E E+E + + Sbjct: 499 LQSSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSQLIAESNDEEERKTYYGIVESNN 558 Query: 61 IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + G T + + D + Sbjct: 559 GRLLELINEILDLSKIESGIIEFTIGPTSLHNLCREVHDAHIFRMPVGVSLVHEPSDESL 618 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ NL A G + F + G PEK + Sbjct: 619 MIETDKNRVFQVISNLIGNAAKFTKEGSISYGYKRVGDQIV-FHVTDTGTGI-EPEKVGR 676 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + L Sbjct: 677 VFERFAKLNNHAQGTGLGLSICKSIVERLGGKITVNSEFGVGTTFNFTLP 726 >gi|121535650|ref|ZP_01667455.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121305754|gb|EAX46691.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 425 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54 +A+ + + + + H++ +P+ I ++ EL+ + IR Sbjct: 183 LARRAMVPIQAAWEKQQQFVADASHELRTPLAVIKSNAELMLRHPDHTIEDESIRVTNIV 242 Query: 55 LSSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + L G + + + + + + V V Sbjct: 243 REVRRMTRLVADLLTLARADANQSELQLGAVSLSELVDAVSEQFKPLAQLEGHTLTVAVY 302 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E + ++L+ L A P G + I+ + + +++ +G + Sbjct: 303 EQLELVGDRERLYQLLVILLDNAVKYTPPPGHILITGVRQGSHILLTVEDSGQGIPPEDL 362 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + + ++ ++ E S LL Sbjct: 363 PRVFDRFYRGDKARSREKGGTGLGLAIAKWIVEKHGGKIWVESKVGVGTKFSVLLP 418 >gi|78186231|ref|YP_374274.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78166133|gb|ABB23231.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 689 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 20/230 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 M + + L A+ L S + H+I +P+ AI + L ++ +++ Sbjct: 455 MQERLE---RQGKLTAMGELASGVAHEIRNPLNAIGLIAQRLDIEFTPKEDEAEFRHLLR 511 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSW 104 + ++ L V + + Sbjct: 512 TVVSEVHRLNAIIQRFLRFARPPALEVVPTDLAAFAADYRAVLEGEASDKGVAFSLSGAP 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++LLN+ A + RGG V++SV + + G P++ Sbjct: 572 GTVALIDRDQMQQVLLNIVRNAVEATSRGGAVSVSVSADAGSAVIEVADTGKG-TTPDER 630 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + D + + + + V L+ Sbjct: 631 HRMFNLYFTTKDDGTGMGLSIASQIVQSHGGTIEVNDRPGGGTVFRILVP 680 >gi|148543263|ref|YP_001270633.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|184152674|ref|YP_001841015.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM 1112] gi|194467422|ref|ZP_03073409.1| multi-sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] gi|148530297|gb|ABQ82296.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|183224018|dbj|BAG24535.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM 1112] gi|194454458|gb|EDX43355.1| multi-sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] Length = 621 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ ++ + +E L + I + +++++ + I + + Sbjct: 380 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPQFLKVVQDETDRMIRMINDLLSLS 439 Query: 68 --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + +D + E+ + +R + Sbjct: 440 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 499 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 500 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 559 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 560 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605 >gi|228952968|ref|ZP_04115030.1| hypothetical protein bthur0006_23580 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806689|gb|EEM53246.1| hypothetical protein bthur0006_23580 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 419 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 250 LNRAQEIIDDYLTFAKPAPEKLDQISIKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413 >gi|228988850|ref|ZP_04148904.1| hypothetical protein bthur0001_54850 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770878|gb|EEM19389.1| hypothetical protein bthur0001_54850 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 801 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLVSC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIRYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|196031997|ref|ZP_03099411.1| sporulation kinase [Bacillus cereus W] gi|228946726|ref|ZP_04109033.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195994748|gb|EDX58702.1| sporulation kinase [Bacillus cereus W] gi|228812943|gb|EEM59257.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 801 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLP 795 >gi|49478009|ref|YP_037213.1| sensory transduction histidine kinase; sporulation kinase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218904259|ref|YP_002452093.1| sporulation kinase [Bacillus cereus AH820] gi|228931049|ref|ZP_04094003.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|49329565|gb|AAT60211.1| sensory transduction histidine kinase; sporulation kinase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218537874|gb|ACK90272.1| sporulation kinase [Bacillus cereus AH820] gi|228828612|gb|EEM74294.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 801 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLP 795 >gi|332290969|ref|YP_004429578.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5] gi|332169055|gb|AEE18310.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5] Length = 358 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 15/227 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 K + ++ + + I H++ +P+ I ELL E D++++ Sbjct: 132 KRQMERADRLGILGEITAGIAHELNTPLANILGFAELLKEDIASNESATEDLDKIIKNAI 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110 S + F +++ + + ++E K + Sbjct: 192 FSREVVKKLMFFACEMPQEMQALNMVPSIKGAVALLEASFKKAKVNYLIDIDDQELWLKA 251 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + +I+ NL + A P G VTI+ S I +K G E ++ Sbjct: 252 DTIQITQIIFNLIINAIYFSPENGLVTITASQSDRSIILKIKDEGVGL-SSEVLDKVFQP 310 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + V + +K + D + +L + Sbjct: 311 FFTTKPTGDGSGLGLSVVHGIVASHKGTITARNNKDKGATFTVMLPR 357 >gi|332074557|gb|EGI85031.1| sensory box protein [Streptococcus pneumoniae GA17545] Length = 449 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVGHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 ++ N+ A P GGK+T+ ++ ++++ I S+ +G + +I D Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432 >gi|310641769|ref|YP_003946527.1| sensor protein [Paenibacillus polymyxa SC2] gi|309246719|gb|ADO56286.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 374 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA N+ +L S + H+I SP+ +I + L + ++ E + Sbjct: 125 MAANLKVM---EELREAFISNVSHEIGSPLTSIIGFAKALKDDNLDREQRDRYLTIIETE 181 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDI-----------EQVIEDFIAVDKRVQVSWTGEKI 109 IRL + +DS + + K++ + + Sbjct: 182 CIRLSKLSDNLMKLAVLDSERHPFHPSSYRLNKQLISLILACEPQWEAKQIDMIVDTHNV 241 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ + ++ +NL A P+GG +++S+ + N+ + + G + + Sbjct: 242 QVNADEDLMGQVWVNLLHNAIKFTPQGGSISVSLSSNGNQAVVCITDTGPGINEQD-QQR 300 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + T + + + + + LL Sbjct: 301 IFERFYKADKSRTRTAGGSGLGLSIAHKITEMHSGSISVSSKVGEGTAFTVLLP 354 >gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 929 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL +++ E +++++ ++ Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 751 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + G D I DI + + + + Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVPQGVELVFDPHPSDCT 811 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + + + F + G + Sbjct: 812 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 870 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + + + + + + Sbjct: 871 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918 >gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483] gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483] Length = 810 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 19/227 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107 + +VD +I + + ++ + Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCTEIIKSMSMKVSKGVELIFEEPLLECY 697 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A +G Q S + F ++ G EK I Sbjct: 698 LYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGI-PEEKQKSI 756 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + V + + + + + + + + Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGIGSCFWFT 803 >gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 586 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 67/230 (29%), Gaps = 26/230 (11%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAII 62 L ++ + + + H++ +P+ I +E L + + +I L + Sbjct: 358 KLEALK--SEFAANVSHELRTPLTLISGFVETLQSWESLDEKDRKMALNIIELETERLKR 415 Query: 63 RLKFMRLAFGYTGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + I + + + + Sbjct: 416 LINDILRLSEIENIQRLAKYEVLDIEGLINEVQYMMSGIAAKKNIQLKTHIEKNVHTLFG 475 Query: 112 SRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++L+NL A P GG++ +S ++ +NE + NG E +I + Sbjct: 476 NSDWFKQMLVNLIENAIKYTPTGGQIKVSAKNEQNEISIMVMDNGIGI-PKEDCERIFER 534 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E + + L Sbjct: 535 FYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQGSHFKVRLP 584 >gi|73748079|ref|YP_307318.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73659795|emb|CAI82402.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 1062 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + M V L S + H+I +P+ I ELL +E+ + + I+ A Sbjct: 818 MEQQLIMT-DRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDIQTIHREA 876 Query: 61 II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112 + L F R + D + + + ++ + ++ + + + Sbjct: 877 LRAAEIVRNLLTFARQHTPTREAGDINLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVM 936 Query: 113 RERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +I L + + L ++TI I S+ NG PE +I Sbjct: 937 LDFFQIQQVLINIIINAEFFLRLKDHPQITIKTSQHNGYVIISISDNGPGI-SPENMKRI 995 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + E+ ++ E + L Sbjct: 996 FDPFFTTKEVGKGTGLGLSICHGIIEEHHGKISVESTLGNGATFRIELP 1044 >gi|304440637|ref|ZP_07400521.1| phosphate regulon sensor histidine kinase protein PhoR [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370824|gb|EFM24446.1| phosphate regulon sensor histidine kinase protein PhoR [Peptoniphilus duerdenii ATCC BAA-1640] Length = 545 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 68/226 (30%), Gaps = 22/226 (9%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLK 65 L + S + H++ +P+ I ELL +E+E + + + + + Sbjct: 321 LKLKREE----FTSNVTHELKTPLTIISGFAELLKSGNVEEEKIKEFGGIIYKQSTNLQR 376 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------- 118 + + + + + + E V + + + ++L ++ ++ Sbjct: 377 LIDDLLKISKLEANDAVIIEELSLDELGDEVCDDLAIEIKNKNLNLVKDFDRVKAKVNGE 436 Query: 119 -----LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG 170 ++NL A GG++ + + + NG F + Sbjct: 437 MIKEAMMNLLTNAIKYNRDGGEIEFKIAKEDGFALVQISDNGIGIEEELLDRIFERFYVV 496 Query: 171 NVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I S + V + + R+ + L Sbjct: 497 DNSRSKKISSTGLGLSIVKHIVEAHGGRIEVTSEIGKGSTFTIYLP 542 >gi|227364326|ref|ZP_03848419.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri MM2-3] gi|325683525|ref|ZP_08163041.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A] gi|227070639|gb|EEI08969.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus reuteri MM2-3] gi|324977875|gb|EGC14826.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A] Length = 598 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ ++ + +E L + I + +++++ + I + + Sbjct: 357 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPQFLKVVQDETDRMIRMINDLLSLS 416 Query: 68 --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + +D + E+ + +R + Sbjct: 417 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 476 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 477 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 536 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 537 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582 >gi|225387786|ref|ZP_03757550.1| hypothetical protein CLOSTASPAR_01556 [Clostridium asparagiforme DSM 15981] gi|225046120|gb|EEG56366.1| hypothetical protein CLOSTASPAR_01556 [Clostridium asparagiforme DSM 15981] Length = 498 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +N + L S I HD+ +PI AI +E + + E + + + Sbjct: 253 LRENAEEKVQYDKESKELISNISHDLKTPITAIKGYVEGIQDGVASSPERLDKYIRTIYN 312 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102 + + + +D+ ++ D V Sbjct: 313 KANDMDRLIDELTFYSKIDTNKIPYTFTKINVAQYFKDCIEEVGLDMEARGIELGYFNYV 372 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + + +++ N+ + L + + I ++D + ++ NG Sbjct: 373 DEDVVVIADAEQMKRVINNIISNSIKYLDKKKGIINIRIKDVGDFIQVEIEDNGKGIAAK 432 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ R+ + + +L K Sbjct: 433 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVRKIIEDHGGRIWATSKEGIGTEIHFVLRK 491 >gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 718 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 54/241 (22%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61 ++ + L + S + H++ +P+ +I ELL E + ++ A Sbjct: 470 SDVTREREADRLKSEFLSIVSHELRTPLTSIMGYTELLLARDFTPGEQREFVKTVYNEAN 529 Query: 62 IRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + L + Sbjct: 530 HLYQIVEDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKHTMLIDIPPYLPP 589 Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSLKINGNLA 158 + ++L+NL A P + ++ G Sbjct: 590 VYADRDKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGI 649 Query: 159 RFPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + I + L + R+ E + S L Sbjct: 650 APEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTL 709 Query: 214 E 214 Sbjct: 710 P 710 >gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 753 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 59/246 (23%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 AK L L A + + H+I +P+ + +LL+E ++ + Sbjct: 356 AKQNAQQLEEARLAAEEGGRAKSDFLATMSHEIRTPMNGVIGMAQLLEETDLDGDQRLYT 415 Query: 54 RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97 SA + D L + Q++ + Sbjct: 416 NTILSSAKTLLALINDILDLSKLDAGQISLNPCNFDLHQCLEETIQLLLTQAEAKGLTLE 475 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKI 153 V + +IL NL A +G QD ++ Sbjct: 476 VERDVDLPRYLVGDDHRLRQILNNLVGNAIKFTEKGRVKVSVEMEPAQDGGVLLNCAIID 535 Query: 154 NGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G F + + + + LA R+ Sbjct: 536 TGIGIPKDMLTGIFERFSQADAAISRRFGGSGLGLAISRRLAEAMGGRITVTSEIGSGSC 595 Query: 209 LSALLE 214 + +L Sbjct: 596 FTLVLP 601 >gi|254853972|ref|ZP_05243320.1| histidine kinase [Listeria monocytogenes FSL R2-503] gi|300765001|ref|ZP_07074989.1| histidine kinase [Listeria monocytogenes FSL N1-017] gi|258607361|gb|EEW19969.1| histidine kinase [Listeria monocytogenes FSL R2-503] gi|300514301|gb|EFK41360.1| histidine kinase [Listeria monocytogenes FSL N1-017] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSR 113 + VD + + I + Sbjct: 423 ILALSRIEQNPVAENVELVDIDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +I++NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|295697226|ref|YP_003590464.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412828|gb|ADG07320.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 444 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 57/216 (26%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + H + +P+ I + EL D+ + ++ + ++ + Sbjct: 221 FTADASHQLRTPLTVIRTTAELALGTDDPEEWRDALETTVAETHHMSRMVESLATLARMD 280 Query: 75 GSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 D + + + + V + + ++L L Sbjct: 281 YEEGAVKRSPFAVRDLVEEVAAHIEPLAGEKGVAFHAPEAGEDRLVGDQHRIWQLLTVLL 340 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A P GG V S + + E +F+++ G E + I Sbjct: 341 ENAIKYTPEGGHVYFSYRRNGPEAVFTVRDTGIGIAREELPHIFDRFYRGSVVQKERIPG 400 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + + + L Sbjct: 401 SGLGLSIAKEIAELHGGTIHVDSEVGVGTTFTVSLP 436 >gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 565 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 65/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 +A + ++ L + + + H++ +P+ +I +L + + + M +++ Sbjct: 323 LADAMKKARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPLNEEQKKQMGMVQ 382 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--- 103 S+ + + + + D + ++ ++ Sbjct: 383 TSARHLLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKNEIDLKVEIG 442 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 G+ R +++LNL A G D+ I + G + + Sbjct: 443 KDVGDMTTDQRRLEQVVLNLLNNAVKFTETGSVSINCRTDTGQYVIS-VADTGIGIQPED 501 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + L + + + L K Sbjct: 502 VAE-LFQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGSTFTVRLPK 559 >gi|116625742|ref|YP_827898.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228904|gb|ABJ87613.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 587 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + + + L I HD+ +P+ AI+ E+L + + ++ + + Sbjct: 350 RQAREDLIRQERISTIGRLSGSIVHDLRNPLAAIYGGAEMLVDTELPPLHVKRLAGNIYR 409 Query: 60 AIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 A +++ + + D + + +++ E Sbjct: 410 ASRKIQELLQDLLNVSRGKQSAPENCRLREVASAACDSLATAAEQQGIAISLEIPSEIEV 469 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ NL A ++ GG+V I+ + + ++ G + Sbjct: 470 PLERSRVERVFANLVGNALEAMQSGGEVHITAEMRDGAAVIHVEDTGPGIAPEIRTKLFQ 529 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + E S L Sbjct: 530 PFVSAGKRNGLGLGLALSRQTVIDHGGDMWVESHPGRGARFSFRLP 575 >gi|313636361|gb|EFS02143.1| two-component sensor histidine kinase [Listeria seeligeri FSL S4-171] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113 + G+VD + + I + + Sbjct: 423 ILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + ++E I + NG + ++ + Sbjct: 483 QLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|313631990|gb|EFR99108.1| two-component sensor histidine kinase [Listeria seeligeri FSL N1-067] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113 + G+VD + + I + + Sbjct: 423 ILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + ++E I + NG + ++ + Sbjct: 483 QLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|228921324|ref|ZP_04084649.1| hypothetical protein bthur0011_23280 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838338|gb|EEM83654.1| hypothetical protein bthur0011_23280 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 360 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 816 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 66/233 (28%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 +A+ + +L + S H+ +P+ I +S ELL + + ++ I Sbjct: 574 LARTLEKEKQLNELKSRFVSMTSHEFRTPLTTILSSTELLQSHSHKWGEPRDLKHLERIH 633 Query: 55 LSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + L + RL F +E + ++ Sbjct: 634 TAVERMTELLNGVLVLSKAEAGRLEFHPQSLNLEQFCRDLVEDLQSSAPEHQLLFSLTGN 693 Query: 106 GEKIDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161 ++++ + + +L NL A PRGG V V + F ++ G P Sbjct: 694 CTQVEMDEKLLQHILPNLLSNAIKYSPRGGSVRFEVTCTSTSVCFQIQDQGIGIPAADLP 753 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F I + V + + +L Sbjct: 754 HLFESFHRAKNVGNISGTGLGLAIVKKSVDLHGGTISVTSEVGIGTTFIVILP 806 >gi|270308463|ref|YP_003330521.1| sensor histidine kinase [Dehalococcoides sp. VS] gi|270154355|gb|ACZ62193.1| sensor histidine kinase [Dehalococcoides sp. VS] Length = 395 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K++ S L ++ L + + H+I SP+ +I E L +E + I Sbjct: 131 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 187 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107 A+ F R + ++ E + V V Sbjct: 188 EALRAAKVVDNLRTFARSYEQEKKLCGLNDVIRKSVELREYELVVQNIVVELELAENLPS 247 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164 + + ++L+N+ + A ++ + QD N ++ NG PE Sbjct: 248 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTQDMGNYIRMIIEDNGPGI-APEIA 306 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + D + + E+ ++ E L Sbjct: 307 ERVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 358 >gi|197118087|ref|YP_002138514.1| PAS/PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087447|gb|ACH38718.1| sensor histidine kinase response regulator, PAS and PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 571 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/247 (10%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + + + A+ L + I HD + + +I ++ + E G M+ + Sbjct: 181 LRRTEKELRHAQKMEAIGTLAAGIAHDFNNILTSILGFTDMVLHKIPEEGTGRREMEQVF 240 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 +++ A ++ + + + L DI + + V E Sbjct: 241 VAAQRAADLVRQILSFSRRSDQERKPVHLSDIVEEACKLLRSSLPATVEIGTECFASEDE 300 Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISV----------------QDSKNENIF 149 + ++L+NL A ++ G + S++ Sbjct: 301 DKVLADPIQLHQVLMNLCTNAAHAMQPEGGMLTITLTAVAAGSPGLRSLPLFLSRDYIRV 360 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 +++ G +I D + + + V + + + Sbjct: 361 AVRDTGRGIEPS-VLERIFDPYFTTKPVGEGTGLGLAVVQGIVKNHGGAITVHSEPGKGT 419 Query: 208 VLSALLE 214 L Sbjct: 420 CFEVFLP 426 >gi|322411349|gb|EFY02257.1| sensor histidine kinase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 450 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 70/224 (31%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLK--- 65 L S + H++ +P+ ++ + LE LDE +++++ + L Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 M + S+ + L + + R + + + Sbjct: 271 IDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434 >gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 812 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + S L + + I H+I +P+ AI +LL D+ ++E + I+ ++ Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + V + Q + + + +Q+ Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 S +++ N A RG D++ + ++ G E Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDTRQQLEMFVEDTGIGISI-ENQE 753 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + +S + + + + + L Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804 >gi|294673424|ref|YP_003574040.1| sensor histidine kinase/response regulator [Prevotella ruminicola 23] gi|294473696|gb|ADE83085.1| sensor histidine kinase/response regulator [Prevotella ruminicola 23] Length = 409 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +L + + H+I +P+ AI +L E +D+ M+ + + Sbjct: 30 EEKAQKAEKASKMKSLFLANMSHEIRTPLNAIEGFSRVLVETDSQDDRMKFFEIIESNNN 89 Query: 62 IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + S D I+ + + ++ + Sbjct: 90 RLMSLVNEILDLSRVEAGEITMKKSSTDLNQLCDSIKNLFKFRCPETVKLSWKKPNMAVT 149 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ NL A G D + F ++ G + Sbjct: 150 FNTDANRITQVFSNLISNALKHTSAGSITYGYRMLDEGSNIEFFVQDTGTGIAPEDLQHI 209 Query: 167 IVD---GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E+ + + + ++ + ++ E + +L Sbjct: 210 FNTYVSRDAETNNNGYGLGLALCKIIVEKLGGKIYVESKLGEGSLFHFVLP 260 >gi|294497123|ref|YP_003560823.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294347060|gb|ADE67389.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 601 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 67/229 (29%), Gaps = 17/229 (7%) Query: 2 AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + + S L + + H+I +P+ IH + L L + + + L+ Sbjct: 372 TEELEKRMHQSEKLALVGEVAAGAAHEIRNPLAVIHGFISLMNQSLSDEEKKRFYLPLLM 431 Query: 55 LSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ M + V + ++ +I ++ ++ + + Sbjct: 432 KELERINYIIEEMLLLSKPGAPVMKKVSMQDIINELLPLITHSSKFTEKDKLIFDVKLQP 491 Query: 111 LS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L NL + ++ G +TI Q + ++ NG Sbjct: 492 HILKVDEKQIKQVLHNLIRNSMEAMDGEGVITIYSQVHDDNYCLYIEDNGKGIPLH-MQQ 550 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + ++ V Sbjct: 551 SLYQPFSTSKDSGTGLGLPIAQRILESHGGQIKLLSTSSRGTVFVIKFP 599 >gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 399 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 63/215 (29%), Gaps = 19/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR-------- 63 + + H++ +P+ ++H SLELL + ++++ ++ + Sbjct: 175 FTALVSHELRTPLTSVHGSLELLASGRFGEMQAQASRLVEIAVKNTDRLVRLANDVLDLS 234 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKILLN 121 V+ + + +E V+ + +++ N Sbjct: 235 RVQSGQLRLRPAPVELADVVENAVIAVEGTAERCHVPLVTRKDPVTVRGDADRLVQVVTN 294 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSH 179 L A P G V + + ++ +G E +I + V+ + Sbjct: 295 LLANAVKVSPPGQPVEVGCSVEGSVARVYVRDHGMGITDDEVK-RIFEPFVQLGAKSGGA 353 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + +L Sbjct: 354 GLGLAITRGIVESHGGTIAVESEAGIGSTFTVILP 388 >gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 1138 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 KNI ++ ++ + + + H++ +P+ +I +LL + + I+ ++ Sbjct: 467 RKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKYAT 526 Query: 58 ----------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------K 98 L ++ G V+ I + + + IE + Sbjct: 527 VIHSAGSDLLHLINELLDLAKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKSINFKT 586 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + ++L NL A GGK+ ++ + F ++ +G Sbjct: 587 TIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELTYKHVNGNIHFIVQDDGIGI 646 Query: 159 RFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + DG+ + LA R+ E D + +L Sbjct: 647 APEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFIL 706 Query: 214 E 214 Sbjct: 707 P 707 >gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 885 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 618 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 676 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724 >gi|228935979|ref|ZP_04098789.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823747|gb|EEM69569.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 484 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKESIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|46908672|ref|YP_015061.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47092786|ref|ZP_00230571.1| histidine kinase [Listeria monocytogenes str. 4b H7858] gi|226225048|ref|YP_002759155.1| two-component sensor histidine kinase [Listeria monocytogenes Clip81459] gi|254825378|ref|ZP_05230379.1| histidine kinase [Listeria monocytogenes FSL J1-194] gi|254932259|ref|ZP_05265618.1| histidine kinase [Listeria monocytogenes HPB2262] gi|46881944|gb|AAT05238.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47018874|gb|EAL09622.1| histidine kinase [Listeria monocytogenes str. 4b H7858] gi|225877510|emb|CAS06224.1| two-component sensor histidine kinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583816|gb|EFF95848.1| histidine kinase [Listeria monocytogenes HPB2262] gi|293594621|gb|EFG02382.1| histidine kinase [Listeria monocytogenes FSL J1-194] gi|328465108|gb|EGF36376.1| two-component sensor histidine kinase [Listeria monocytogenes 1816] gi|332312930|gb|EGJ26025.1| Histidine kinase [Listeria monocytogenes str. Scott A] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSR 113 + VD + + I + Sbjct: 423 ILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +I++NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQIVINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|307945129|ref|ZP_07660465.1| two component sensor kinase [Roseibium sp. TrichSKD4] gi|307771002|gb|EFO30227.1| two component sensor kinase [Roseibium sp. TrichSKD4] Length = 625 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLD--EVGIEDEVMQL 52 + + + + L AL + + + H+ P+ A+ + + LLD E + Sbjct: 374 LRRTQAELVQAGKLAALGQMSAALSHEFNQPLAAVKSYADNAVKLLDIGRTDETRENVTR 433 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSW 104 I + K +R G + L I + + Sbjct: 434 ISEMADRMASISKHLRNFARRPGEKTRPVVLTQIINDSRALVQPRLKSANASLEFAIPDK 493 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162 + + ++++NLF A ++ I + D + +++ +G E Sbjct: 494 DIQVLGGHIRLQQVIVNLFTNALDAMKDQAHPVIDMTLEDQETHCTLTVRDHGPGVLEGE 553 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F +I D + + + + + L D V L K Sbjct: 554 -FEKIFDPFYTTKQPGEGMGLGLSISYNIIKDFGGDLRVTNHPDGGAVFELTLRK 607 >gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides fragilis 638R] Length = 633 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + L + + + H+I +P+ AI LL V ++E+++ + + Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105 + L+ + + + + ++ ++V + Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L NL + A +G + F + G E+ Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGM-SAEQCE 575 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + ++ + + + V L Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626 >gi|229153754|ref|ZP_04281895.1| hypothetical protein bcere0011_52530 [Bacillus cereus m1550] gi|228629707|gb|EEK86394.1| hypothetical protein bcere0011_52530 [Bacillus cereus m1550] Length = 363 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 810 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 59/228 (25%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E ++E I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETESKEECQDYIKIVQDNND 637 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + + + + + Sbjct: 638 LLLRLISDILDLAKIEAGTFNFVYADLDVNEVCSEIIKSTGMKVKGNIKLLFEKQIPECH 697 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ N A G Q S + F ++ G + + Sbjct: 698 IYTDKNRFMQVITNFINNALKFTHEGTIALGYEQISSQKIRFYVRDTGVGIPASKINSVF 757 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + L Sbjct: 758 ERFVKLNNFVQGTGLGLSICKSIITQMEGEIGVDSTEGAGSCFWFTLP 805 >gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 633 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + L + + + H+I +P+ AI LL V ++E+++ + + Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105 + L+ + + + + ++ ++V + Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L NL + A +G + F + G E+ Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGM-SAEQCE 575 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + ++ + + + V L Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626 >gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 633 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + L + + + H+I +P+ AI LL V ++E+++ + + Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105 + L+ + + + + ++ ++V + Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L NL + A +G + F + G E+ Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGM-SAEQCE 575 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + ++ + + + V L Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626 >gi|323126806|gb|ADX24103.1| sensor histidine kinase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 450 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 70/224 (31%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLK--- 65 L S + H++ +P+ ++ + LE LDE I++++ + L Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGAIKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 M + S+ + L + + R + + + Sbjct: 271 IDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434 >gi|301058202|ref|ZP_07199252.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300447704|gb|EFK11419.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 557 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 75/231 (32%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + + LV + + I H+I +P+ +I S+E+L E D + + I Sbjct: 321 EESMKRVEGLALVGEMAAGIAHEIRNPMASISGSIEVLKEGNDWDSTQKRLMAIVSREID 380 Query: 63 RLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 RL + F D + + + + +K ++V + Sbjct: 381 RLNQLISDFLIFARPKETKWRIFDLNELIKESLTLFKISPRWNKNIRVITHFIDSVMIES 440 Query: 115 RA----KILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L NLF+ A ++P + Q ++ + ++ G+ Sbjct: 441 DPALIKQVLWNLFLNACDAMPEGGILEIGTKWAFNTPQSTEKDVAIVIRDTGDGFDSIAL 500 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + + + R+ + + + L Sbjct: 501 P-KLFTPFFTTKERGSGLGLATVKRIVDQLRGRISGKNHPESGAEIVITLP 550 >gi|46446999|ref|YP_008364.1| putative two-component sensor histidine kinase [Candidatus Protochlamydia amoebophila UWE25] gi|46400640|emb|CAF24089.1| putative two-component sensor histidine kinase [Candidatus Protochlamydia amoebophila UWE25] Length = 410 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAI 61 + S + + + + + H+I +P+G I LL + + +Q + Sbjct: 182 QQAANQYSRLKELGEMAAHLAHEIRNPLGGIKGFATLLQQDLADRPELQQMAYHIIEGTD 241 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL-- 119 F+ YT + + + +Q + + Sbjct: 242 SLNHFVSSILTYTRPFQARFE---HVNLKTYLEEIGLLLQADVSWNASFSFNLNTHLPDL 298 Query: 120 -------------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 LNL + A ++P+GGK+T+SV+ ++E + + G E + Sbjct: 299 VLSIDPPLLKSAILNLLVNAMQAMPQGGKITVSVEKMQDEVVIIISDTGIGI-SKENLNK 357 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + V + ++ + + + + L Sbjct: 358 IFSPFFTTKETGTGLGLAEVQKVIQAHQGTIEVKSEVGNGTSFTIKLP 405 >gi|196047143|ref|ZP_03114360.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|196022013|gb|EDX60703.1| sensor histidine kinase [Bacillus cereus 03BB108] Length = 462 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 62/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E + ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPKQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 1026 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLS 56 + + S + H++ +P+ AI L LL + + Q + S Sbjct: 791 TEQQAIEQIK--NEFISIVSHELRTPLTAIQGFLGLLNTGIYDNKSQKAKWMIQQALTNS 848 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------E 107 + + L +G V + + +++ + + + ++ Sbjct: 849 DRLVRLVNDILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITISLTPTTAC 908 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + L+NL A P +T+S Q + +F ++ G + F Sbjct: 909 VWASPDLIIQTLINLLSNAIKFSPHNSVITLSAQPQSDWVLFKVQDQGRGIPANKLETIF 968 Query: 165 TQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + ++ + E L Sbjct: 969 ERFQQVDISDARAKGGTGLGLAICQSIIQQHDGSIWAESTLGEGSTFYFTLP 1020 >gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 2319 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 17/240 (7%), Positives = 67/240 (27%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I + + + + + H++ +P+ +I +E++ + + +++++ + Sbjct: 2076 RDITHEVQVDRMKSEFVANVSHELRTPMTSIKGYVEIMLLGATGELTPQQRHFLEIVKNN 2135 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + + Sbjct: 2136 TERLGVLVNDLLDLSRIESGKITLNMTDLNLRLLAEEVMEYVSRRSQEEEKPMNFSLEVE 2195 Query: 106 GEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +++ NL + + P G V + + + E ++ +G E Sbjct: 2196 ENLPTVRGDEERIRQVITNLVVNGYNYTPENGHVWVRIFRNDGEVQVDVQDDGIGISI-E 2254 Query: 163 KFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIID--DHNVVLSALLE 214 +I + + + + R+ + S L Sbjct: 2255 DQERIFERFYRGEDPLVLKTAGTGLGLAVAKTIVTMHNGRIWFKSSGIRGEGSTFSFTLP 2314 >gi|227523373|ref|ZP_03953422.1| histidine kinase [Lactobacillus hilgardii ATCC 8290] gi|227089479|gb|EEI24791.1| histidine kinase [Lactobacillus hilgardii ATCC 8290] Length = 617 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 66/225 (29%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA 70 S + H++ +P+ ++ + +E L + +D + + + + L+ Sbjct: 380 QFVSNVSHELRTPLTSVRSYIEALHDGAWKDPKLAPKFLKVTQDETDRMIRMINDLLTLS 439 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----------------RE 114 +G+ + L +I ++ + + + + Sbjct: 440 RMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKRDLWVDLDTDR 499 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L NL A P GG +T + +++N+ I S+ G + Sbjct: 500 FTQVLDNLMNNAIKYSPDGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVD 559 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L E ++ L Sbjct: 560 KARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALP 604 >gi|227508144|ref|ZP_03938193.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511167|ref|ZP_03941216.1| histidine kinase [Lactobacillus buchneri ATCC 11577] gi|227085649|gb|EEI20961.1| histidine kinase [Lactobacillus buchneri ATCC 11577] gi|227192373|gb|EEI72440.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 617 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 66/225 (29%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA 70 S + H++ +P+ ++ + +E L + +D + + + + L+ Sbjct: 380 QFVSNVSHELRTPLTSVRSYIEALHDGAWKDPKLAPKFLKVTQDETDRMIRMINDLLTLS 439 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----------------RE 114 +G+ + L +I ++ + + + + Sbjct: 440 RMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKRDLWVDLDTDR 499 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L NL A P GG +T + +++N+ I S+ G + Sbjct: 500 FTQVLDNLMNNAIKYSPDGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVD 559 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L E ++ L Sbjct: 560 KARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALP 604 >gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 633 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + L + + + H+I +P+ AI LL V ++E+++ + + Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105 + L+ + + + + ++ ++V + Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L NL + A +G + F + G E+ Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGMSV-EQCE 575 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + ++ + + + V L Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626 >gi|261403959|ref|YP_003240200.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261280422|gb|ACX62393.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 764 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 69/222 (31%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + + ++ V L + + H+I +P+ + L+L + + + I Sbjct: 535 EELLRRSEKLNTVGQLAAGVAHEIRNPLTTLRGFLQLQQQTHKANPDHIDLMLSELDRIN 594 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSR 113 L +I K + F + + ++ ++ + Sbjct: 595 LIVSEFLILAKPQAINFQERDVGVIMGDVISFLDSQAHLYGIEFKLDFIEEPTFVHCEEN 654 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ +NL A ++P GG + I + + ++ G + + + + Sbjct: 655 QLKQVFINLLKNAIEAMPEGGNIWIRLTRPQPEQIQIDIRDEGQGI-PEDMMPHLGEPFI 713 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E +S +L Sbjct: 714 TNKETGTGLGLMVSQRIIQGHRGTMEIESEVGVGTRVSIVLP 755 >gi|229051554|ref|ZP_04195031.1| hypothetical protein bcere0027_54620 [Bacillus cereus AH676] gi|229110099|ref|ZP_04239675.1| hypothetical protein bcere0018_23540 [Bacillus cereus Rock1-15] gi|228673291|gb|EEL28559.1| hypothetical protein bcere0018_23540 [Bacillus cereus Rock1-15] gi|228721796|gb|EEL73263.1| hypothetical protein bcere0027_54620 [Bacillus cereus AH676] Length = 363 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|56419442|ref|YP_146760.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|297530902|ref|YP_003672177.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|56379284|dbj|BAD75192.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|297254154|gb|ADI27600.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 354 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 20/231 (8%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 ++ NL + ++ S + H+I SP+ +I L + E Sbjct: 118 DMAANLQAMEEMRQEFISNVSHEIGSPLTSIRGFARALKNEDLSREQRLHYLDIIETECV 177 Query: 59 ----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + +D+ + + + + Sbjct: 178 RLSKLSENLLRLAMLDSDHYPFHPTSYRLDTQLQTLILHCEPQWAEKELNMCVLFEKVII 237 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 +++ LNL A P+GG +TI +Q + I ++ G + F Sbjct: 238 TADEDLLSQVWLNLIHNAIKFTPKGGTITIQLQRRGEQAIVTVSDTGPGINEHDQLRIFE 297 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 298 RFYKADKSRHRAAGGSGLGLSIAKKIVDIHHGIISVQSQPGEGATFTVELP 348 >gi|15616588|ref|NP_244894.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10176651|dbj|BAB07745.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 607 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 68/219 (31%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFMRL-AF 71 + + H++ +P+ + + LE LD+ + D + + + + I + + + Sbjct: 380 FVANVSHELRTPLTTMKSYLEALDDGAMNDPNLAPRFLHVTQNETERMIRLVNDLLQLSK 439 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILL 120 T + D+ + D I + + I + +++ Sbjct: 440 IDTHDYKLNLSWVDLGPYLHDMIDRHEIIAKEKDIHFIRKITKHATFVEIDQDKLTQVID 499 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN--VEST 175 N+ A P GG VTI++ + S+ G + F + + + Sbjct: 500 NILSNAMKYSPEGGDVTITLLHQGHNVRVSISDQGMGIPKESQTKIFDRFYRVDKARARS 559 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L H + + E + L Sbjct: 560 VGGTGLGLAIAKELVHAHGGEIWVESKYKVGTTIYFTLP 598 >gi|229178922|ref|ZP_04306281.1| hypothetical protein bcere0005_22770 [Bacillus cereus 172560W] gi|228604575|gb|EEK62037.1| hypothetical protein bcere0005_22770 [Bacillus cereus 172560W] Length = 360 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISIKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|77745279|gb|ABB02540.1| signal transduction histidine kinase [Lactobacillus reuteri] Length = 621 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ ++ + +E L + I + +++++ + I + + Sbjct: 380 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPKFLKVVQDETDRMIRMINDLLSLS 439 Query: 68 --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + +D + E+ + +R + Sbjct: 440 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 499 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 500 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 559 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 560 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605 >gi|289435761|ref|YP_003465633.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172005|emb|CBH28551.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 591 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113 + G+VD + + I + + Sbjct: 423 ILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTVPPVIIETNRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + ++E I + NG + ++ + Sbjct: 483 QLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPTKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|322419346|ref|YP_004198569.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125733|gb|ADW13293.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 493 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 17/228 (7%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIH-------NS-LELLDEVGIEDEVMQL 52 K I + L ++ L S + H+I +P+G I + D V + + Sbjct: 263 KAIEQLAQNEKLASIGYLASGVAHEINNPLGGITICFKNLAGFTAQTPDSVKLTMAIEDG 322 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDL 111 ++ L F R + V + + + + +++ E Sbjct: 323 LKKIKGIVEQLLDFSRASKTEKEPVALNGLIRRLLVLFQYEAQRRQIVIELELDEEIPCC 382 Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ +NL A ++ GG + IS + G PE I Sbjct: 383 VADENKISQVFMNLITNALQAMESGGTLRISTALEGELCRIAFGDTGAGI-APEIIPHIF 441 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + +++ L E + L Sbjct: 442 DPFFSTKKVGEGTGLGLSVSRGIIEQHQGELQVESEPGLGTTFTIRLP 489 >gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 810 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 17/226 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ L + L + + H+I +P+ AI LL E E + I++ + Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +VD +I + + + + + + Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKVGKGVELILEEPFPECY 697 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + +++ N A +G Q S + F ++ G ++ + Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 757 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + + + Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGIGSCFWFT 803 >gi|258405430|ref|YP_003198172.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797657|gb|ACV68594.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 763 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55 + +L + L +L L I HD + + AI N++ L +Q Sbjct: 384 KRREQEHLRAEKLESLGVLAGGIAHDFNNILTAILNNITLARVGQRLDVAVASKLQDAER 443 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKID 110 ++ A + + V L ++ + F V Sbjct: 444 ATQRAKKLTQQLLAFSQGGLPVTQCAPLDELLEDAISFALRGSNVCYRVDIPSDLWPVQV 503 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------------ENIFSLKINGNL 157 + + A++ NL + A ++ GG++ I ++ + + NG Sbjct: 504 DTGQIAQVFDNLAINASQAMANGGQLDIWAENVPSAATFSSETQTSRGYVRVHFQDNGCG 563 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + QI D + + + V + + + + + + L Sbjct: 564 IPEAD-QGQIFDPYFTTKPEGSGLGLSSVFSIIKRHGGTIHVQSAEGRGTTFTLYLP 619 >gi|196040228|ref|ZP_03107530.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196029083|gb|EDX67688.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 672 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS+++L+ + + I H+I +P+ I L+LL E ++ L Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 63 RLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + + Sbjct: 506 ANSIITEFLSIGNTKKLDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661 >gi|227543740|ref|ZP_03973789.1| histidine kinase [Lactobacillus reuteri CF48-3A] gi|300908805|ref|ZP_07126268.1| sensor histidine kinase [Lactobacillus reuteri SD2112] gi|227186308|gb|EEI66379.1| histidine kinase [Lactobacillus reuteri CF48-3A] gi|300894212|gb|EFK87570.1| sensor histidine kinase [Lactobacillus reuteri SD2112] Length = 598 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ ++ + +E L + I + +++++ + I + + Sbjct: 357 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPKFLKVVQDETDRMIRMINDLLSLS 416 Query: 68 --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + +D + E+ + +R + Sbjct: 417 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 476 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 477 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 536 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 537 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582 >gi|226312805|ref|YP_002772699.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226095753|dbj|BAH44195.1| probable two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 439 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 60/230 (26%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K L A+ L + + H+I +P+ AI ++LL E G + + Sbjct: 207 KKYEEELNKREALAAVGQLAAGMAHEIRNPLTAIKGFIQLLREQGEANRSESYFSVILTE 266 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----------EDFIAVDKRVQVS---WTG 106 + D I + + ++++ Sbjct: 267 IERIDGLLNDVLVLARYRDDKIVSERFLVMDELYGVIRLLEPEANRRGIKLELDIAQGEW 326 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFT 165 + +LN+ A +L G + S N+ I ++ NG Sbjct: 327 HVFGHRSRIKQAILNILKNALEALMTQGNLVHVKVYSSLNQVIIVVEDNGPGLSDSCL-Q 385 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLE 214 + + + + + ++ L E L Sbjct: 386 NLFVPFYTTKQEGTGLGLSTTQRIIADHGGELYAENSPKWKGARFEIRLP 435 >gi|86156838|ref|YP_463623.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773349|gb|ABC80186.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 300 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 62/225 (27%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 L +++ H++ +P+ +I +E L + + E ++++ + + Sbjct: 69 AKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQDPQRQREALEIVAEETARLSGLINR 128 Query: 67 MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + ++++ + +R+ Sbjct: 129 LLDWARMESGRRVYELSRQPLGPILDAALAAFEPQQLHHPVQLELDLPSRLPSVMADRSA 188 Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173 ++ LNL A ++ +S S ++ NG ++ Sbjct: 189 LVEAVLNLLNNAFKYTGAEKRIRLSAVASGPTVTIAVTDNGPGIPQRDQKHVFDKFYRAS 248 Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ + V + + ++ E L Sbjct: 249 DPLKRTVEGTGLGLAMVKHIVIGHGGKVSVESEPGRGATFVIALP 293 >gi|15599919|ref|NP_253413.1| two-component sensor CbrA [Pseudomonas aeruginosa PAO1] gi|9950985|gb|AAG08111.1|AE004886_3 two-component sensor CbrA [Pseudomonas aeruginosa PAO1] gi|12082250|dbj|BAB20866.1| CbrA [Pseudomonas aeruginosa] Length = 983 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804 Query: 55 LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + + V+ Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVEFFNLCDPAHWVE 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P GG + + + S++ ++ G+ Q+ + Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLVVEDEGSGI-PKAIMDQLFE 923 Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + V + E+ ++ E D L + Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHQREGGTRFRVTLPR 975 >gi|254244372|ref|ZP_04937694.1| two-component sensor CbrA [Pseudomonas aeruginosa 2192] gi|126197750|gb|EAZ61813.1| two-component sensor CbrA [Pseudomonas aeruginosa 2192] Length = 983 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804 Query: 55 LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + + V+ Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVEFFNLCDPAHWVE 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P GG + + + S++ ++ G+ Q+ + Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLVVEDEGSGI-PKAIMDQLFE 923 Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + V + E+ ++ E D L + Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHQREGGTRFRVTLPR 975 >gi|113972199|ref|YP_735992.1| periplasmic sensor signal transduction histidine kinase [Shewanella sp. MR-4] gi|113886883|gb|ABI40935.1| periplasmic sensor signal transduction histidine kinase [Shewanella sp. MR-4] Length = 709 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 511 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWIRTYDWLQQDMPIGVKIEVEDEGSGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + + L Sbjct: 631 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684 >gi|116626238|ref|YP_828394.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229400|gb|ABJ88109.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 760 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 74/238 (31%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA- 60 + + ++ + +L + I HD + +G I S EL+ G + + L + Sbjct: 374 KQEYLMAMQKLESLGVLAAGIAHDFNNLLGGILASAELISAGGEQGAPLDEESLLRIRTA 433 Query: 61 --------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKI 109 + + SV+ + ++ ++++ I+ + V + Sbjct: 434 AIRGGEIVRQLMAYGGEESQAFSSVEIPQLVNEMLELLKISISKRAVLNVDFPAGLPSVR 493 Query: 110 DLSRERAKILLNLFMVAHASLPRGG-------------KVTISVQDSKNENIFSLKINGN 156 + + +++LNL + A +L +V S++ ++ +G Sbjct: 494 ANTAQLRQVVLNLIVNASEALEDTQGVIAITAARVSGDDYQPAVLASQDYVSLTVSDSGC 553 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D S + V + + + LL Sbjct: 554 GM-TEEVQARIFDPFFTSKFAGRGLGLASVQGIIRSHGGAIHVTSAPGRGSRFEVLLP 610 >gi|108805803|ref|YP_645740.1| periplasmic sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108767046|gb|ABG05928.1| periplasmic sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 471 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 57/217 (26%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + H++ +P+ +I +L+ + E IR + ++ + Sbjct: 248 FAADASHELRTPLTSIAGYARMLERWALKDPDAAREGAAAIRREAERMQHLVEELLALAR 307 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-- 123 G D + V ++ +R ++ L Sbjct: 308 GDEGRPLELGRADLAEVAEESAAAARAAAGDRVSVVWEPPEGPVEAVFDRERVRQALAAL 367 Query: 124 -MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177 A P GG+V++ + ++ G + F + G + Sbjct: 368 LDNAVRYTPEGGRVSVRALRRDGKAAVRVEDTGPGIPEEQLGMIFERFYRVDGTRSRRLG 427 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + + + LL Sbjct: 428 GAGLGLSIARQIAEAHGGAIEVRSVPGEGSSFTLLLP 464 >gi|229070102|ref|ZP_04203369.1| hypothetical protein bcere0025_22980 [Bacillus cereus F65185] gi|228713016|gb|EEL64924.1| hypothetical protein bcere0025_22980 [Bacillus cereus F65185] Length = 360 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|154491989|ref|ZP_02031615.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC 43184] gi|154088230|gb|EDN87275.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC 43184] Length = 794 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + K S L + + + H+I +P+ AI LL ++ +E + +I ++ Sbjct: 412 LRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLTMAEDEEERNEYINIISSNN 471 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + +D L DIEQ ++ Sbjct: 472 ELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPEGVQISFVEKMPYC 531 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ +++ N A G ++ G PEK Sbjct: 532 IIMSDKNRLAQVITNFINNAIKFTKEGSIRFGYRHKDDKLL-LYVRDTGCGI-EPEKKDL 589 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V S + ++ + + E L Sbjct: 590 VFNRFVKLNSFAQGTGLGLAICQMIVKKMGGEIGVESQLGKGSTFWFTLP 639 >gi|49477450|ref|YP_036123.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329006|gb|AAT59652.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 351 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 294 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 346 >gi|56696820|ref|YP_167182.1| phosphate regulon sensor histidine kinase, putative [Ruegeria pomeroyi DSS-3] gi|56678557|gb|AAV95223.1| phosphate regulon sensor histidine kinase, putative [Ruegeria pomeroyi DSS-3] Length = 348 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 18/237 (7%), Positives = 58/237 (24%), Gaps = 33/237 (13%) Query: 12 MDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAII 62 M+ + + + H++ +P+ AI +E L + +D + ++ + Sbjct: 112 MEQAGQMRRDFVANVSHELRTPLTAIMGFIETLRGPARNDPAAQDRFLGIMEQEAGRMNR 171 Query: 63 RLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + + + Sbjct: 172 LVGDLLSLNRVESEERVRPRGAVDLSGQIASTLNSLRPLAAEAGVELYFTGPETPVIVPG 231 Query: 114 ERAKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLA---RF 160 + +I L + ++ G + + G Sbjct: 232 DEDQIRQVLTNLIENAIKYGGSGGEVRVTLSEAERDPAVRGPAARIQVSDKGAGIDAVHL 291 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P + + + + V + ++ R+ E + +L K Sbjct: 292 PRLTERFYRADNHRSRQKGGTGLGLAIVKHIVTRHRGRMRVESTLGSGTTFTVILPK 348 >gi|301059870|ref|ZP_07200761.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300446020|gb|EFK09894.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 375 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----------ELLDEVGIEDEV 49 A+ +++ L +L L + + H+I +P+ I S EL D Sbjct: 118 ARMEQQMIATERLASLGTLAAGVAHEINNPLAIIKESAGWMKSILQKKELAQMPRRGDFE 177 Query: 50 MQL------IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 M L + + L ++ VD + + + + + Sbjct: 178 MALGKIENGVERARRITHQLLGSVKQTDATLSKVDLKELVEETMVLHQKEADQKGVQLLE 237 Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++L+N+ A + GGK+T++ + S++ ++ +G Sbjct: 238 TIDPGKNVIWSDPYKLRQVLINILSNAVHATDAGGKITVTAETSEDHATLTISDSGRGI- 296 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I + + + + + + + + E S L K Sbjct: 297 PGEHLKKIFEPFFSTKPTGEGTGLGLFVTRSIIDKLGGEIEVESRVGQGTQFSVKLPK 354 >gi|229158276|ref|ZP_04286343.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342] gi|228625234|gb|EEK81994.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342] Length = 484 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K N I + NG+ F Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSIDNNKVIVKVMDNGSGIEFDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|154687604|ref|YP_001422765.1| putative two-component sensor histidine kinase [Bacillus amyloliquefaciens FZB42] gi|154353455|gb|ABS75534.1| putative two-component sensor histidine kinase [Bacillus amyloliquefaciens FZB42] Length = 353 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/222 (9%), Positives = 55/222 (24%), Gaps = 17/222 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----------- 58 L S + H+I +P+ ++ LL + + E Sbjct: 124 EMEKLKQEFISNVSHEIQTPLTSLKGYAHLLKKPDLSYEERGRYLHIIETETERLSKISE 183 Query: 59 ---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + +D + + E + + Sbjct: 184 NLLKLTALERQTEPIQKKPFRIDKQLRRTILTCEPEWSAKQIEFLIDLQESYVYGDEALL 243 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172 +++ +NL A GG++++ + D + +G + F + + Sbjct: 244 SQVWMNLIHNAVKFTGEGGRISVKIADLPGAAAVEIADDGIGMEPEQAERVFERFYKADK 303 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + E + +L Sbjct: 304 ARNEGGSGLGLSIAQKIAELHGGSIEVESKHGEGTLFRVILP 345 >gi|107103824|ref|ZP_01367742.1| hypothetical protein PaerPA_01004895 [Pseudomonas aeruginosa PACS2] gi|116052872|ref|YP_793189.1| two-component sensor CbrA [Pseudomonas aeruginosa UCBPP-PA14] gi|218893820|ref|YP_002442689.1| two-component sensor CbrA [Pseudomonas aeruginosa LESB58] gi|296391551|ref|ZP_06881026.1| two-component sensor CbrA [Pseudomonas aeruginosa PAb1] gi|313109704|ref|ZP_07795644.1| two-component sensor CbrA [Pseudomonas aeruginosa 39016] gi|115588093|gb|ABJ14108.1| two-component sensor CbrA [Pseudomonas aeruginosa UCBPP-PA14] gi|218774048|emb|CAW29864.1| two-component sensor CbrA [Pseudomonas aeruginosa LESB58] gi|310882146|gb|EFQ40740.1| two-component sensor CbrA [Pseudomonas aeruginosa 39016] Length = 983 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804 Query: 55 LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + + V+ Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVEFFNLCDPAHWVE 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P GG + + + S++ ++ G+ Q+ + Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLVVEDEGSGI-PKAIMDQLFE 923 Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + V + E+ ++ E D L + Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHQREGGTRFRVTLPR 975 >gi|291286369|ref|YP_003503185.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290883529|gb|ADD67229.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 612 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 82/222 (36%), Gaps = 9/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSA 60 + ++ + + ++ + H++ +P+ +I LL++ + E + I+ + Sbjct: 385 TQTKLELMNRLSALGVMAGGVAHELNTPLNSIIVLTGLLEDEIPEQSEDLCTIKNEAKRC 444 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRER 115 + ++ +R + L + + E +D + +S + + Sbjct: 445 VDIIQNLRKLAPSKNTDGLLEEVDMKHLIEETVKYMDFKNGISVELHLQNAKLKGYTTLL 504 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++L+NL A ++ G +TI + ++++ + + G+ E +I D S Sbjct: 505 QQVLVNLIQNAMDAIESDGLITIELINNEDHVMLIISDTGSGI-DDENIHKIFDPFHTSK 563 Query: 176 ID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ ++ + + LEK Sbjct: 564 SPEKGMGLGLSLVYSIIKKHGGQINVDSQINRGTRFIIRLEK 605 >gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 812 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + S L + + I H+I +P+ AI +LL D+ ++E + I+ ++ Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + V + Q + + + +Q+ Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 S +++ N A +G D++ + ++ G E Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHQGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + +S + + + + + L Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804 >gi|225016620|ref|ZP_03705812.1| hypothetical protein CLOSTMETH_00527 [Clostridium methylpentosum DSM 5476] gi|224950584|gb|EEG31793.1| hypothetical protein CLOSTMETH_00527 [Clostridium methylpentosum DSM 5476] Length = 339 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 68/236 (28%), Gaps = 21/236 (8%) Query: 1 MAKNICFN---LSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RL 55 MA+ LS ++ L + + + H+ +PI +I LL + E Sbjct: 101 MAQRFNAMTYDLSHIETLRSDFVANVSHEFKTPIASIEGYATLLQNHNLSQEKHDRYVEK 160 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGL------------GDIEQVIEDFIAVDKRVQVS 103 ++ + + + L I + + A + + Sbjct: 161 ILENSRRLTNLSDNILMLSKLENQEMVLGKTEYRLDEQIRKCILMLENKWTAKNIEFDLE 220 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP- 161 + S ++ N+ A P GG + + + + + ++ +G+ Sbjct: 221 LPRQIYYGSESFLERVWSNILDNAIKHSPVGGVIHVGILQTNTQFTVTVADHGDGMTEEV 280 Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ + + + V + K + E L K Sbjct: 281 KKHIFEKFYQGDSSRKAEGNGLGLALVKRIVELCKGTVTVESSPGRGAKFFVALPK 336 >gi|253699135|ref|YP_003020324.1| GAF sensor hybrid histidine kinase [Geobacter sp. M21] gi|251773985|gb|ACT16566.1| GAF sensor hybrid histidine kinase [Geobacter sp. M21] Length = 837 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 M + + + + + L S + HD + + AI L LD I + + + + Sbjct: 444 MTEQLRQS-QKREAIGELASGVAHDFNNLLTAIIGFASLAQANLDPDTIPFQYLDEVLNA 502 Query: 57 SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 S A + + R VD +G +E+++ ++ + VS + + Sbjct: 503 SERATYLTRGLLAFGRNQAANPQPVDLNRIVGQMEKLLGRLLSRQIELTVSLCNDPPTVL 562 Query: 113 RERAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKIN 154 + ++ + +A + LP V+ + S++ Sbjct: 563 ADPGQLDQVVMNLATNARDSMNNAGILTIETAVVDLPPDSNRGYGVKRAGRYARLSVRDT 622 Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ + + + V + +N + E Sbjct: 623 GRGI-DEATRARLFEPFFTTKETGQGTGLGLAIVQGIVQQNGGFIEVESAPGEGACFLIH 681 Query: 213 LE 214 L Sbjct: 682 LP 683 >gi|124266360|ref|YP_001020364.1| sensor histidine kinase [Methylibium petroleiphilum PM1] gi|124259135|gb|ABM94129.1| sensor histidine kinase [Methylibium petroleiphilum PM1] Length = 685 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 26/238 (10%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + L S L L + I H++ +PI I +L+LL E D ++L Sbjct: 438 LEQAQAQLLRSEKLATVGQLTASIAHEVNNPIAVIQGNLDLLRELLGPQTAAKVDAELRL 497 Query: 53 IRLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + Y SV L D ++ +A + Sbjct: 498 VDEQIERMRLIVTQLLQFARPNEYAGYVDSVSVARALDDSLLLVGPQLARTRIAVQRDDR 557 Query: 107 EKI---DLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNL 157 +E ++LLNL + A ++P + + + +G Sbjct: 558 ATASAAINRQELQQVLLNLLINALHAMPDSGTLSLHTRDWHAADGRVQGVQIDVADSGPG 617 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALL 213 PE +++ V + D + + L L DD V S L Sbjct: 618 L-GPEIESRLFQPFVTTKTDGTGLGLWISRSLIERYGGTLTAANRDDGARGAVFSVRL 674 >gi|229179502|ref|ZP_04306855.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W] gi|228604003|gb|EEK61471.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W] Length = 448 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448 >gi|52144661|ref|YP_082167.1| sensor histidine kinase [Bacillus cereus E33L] gi|51978130|gb|AAU19680.1| sensor histidine kinase [Bacillus cereus E33L] Length = 462 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|256378110|ref|YP_003101770.1| histidine kinase [Actinosynnema mirum DSM 43827] gi|255922413|gb|ACU37924.1| histidine kinase [Actinosynnema mirum DSM 43827] Length = 594 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 MA+ L + A S H++ +P+ I LE ++ + + Sbjct: 360 MAQARA-RLEGLRKAA--VSDTAHELRTPLSNIRGWLEAAEDGVTDRDPELIALLLKEAL 416 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-- 109 ++ T S L + D + + A + ++ + Sbjct: 417 ALQHIVDDLQDLAVADAGGLRLTVSPQPLTTVLDRLRAAHETTATRAGITLTTSAPDTLT 476 Query: 110 --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 ++L NL A +P GG+V ++ + +E + ++ G + F Sbjct: 477 AEADPVRLRQVLDNLVANAVRHVPPGGRVEVTAERDGDEAVITVTDTGTGITPEDLPHVF 536 Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L + + + + L Sbjct: 537 DRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVSATSEPGAGSIFTVRLP 588 >gi|228923427|ref|ZP_04086713.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836212|gb|EEM81567.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 484 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADWEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEVDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ ++ E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGKIWAESELGKGTSIFFSLEK 478 >gi|152986727|ref|YP_001350766.1| two-component sensor CbrA [Pseudomonas aeruginosa PA7] gi|150961885|gb|ABR83910.1| probable two-component sensor [Pseudomonas aeruginosa PA7] Length = 983 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804 Query: 55 LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + + V Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVQFFNLCDPAHWVE 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P GG + + + S++ ++ G+ Q+ + Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLIVEDEGSGI-PKAIMDQLFE 923 Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + V + E+ ++ E D L + Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHSREGGTRFRVTLPR 975 >gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 633 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 63/237 (26%), Gaps = 24/237 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + L S+D + + S + H++ +P+ +I + L + G + ++ + Sbjct: 389 EKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYDESLGDINGSQKTSLETVLR 448 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + + + I +D + V I+ Sbjct: 449 NADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTIMDTIMLVEENDLHIEKKIPS 508 Query: 116 AK------------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +L N+ A P GG + + V D +N ++ G Sbjct: 509 DLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGVFDDENYLHLTVSDTGIGIPKELI 568 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + Y + + + E + L K Sbjct: 569 PNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEIWIESEPHKGTTVHIRLPK 625 >gi|116672336|ref|YP_833269.1| periplasmic sensor signal transduction histidine kinase [Arthrobacter sp. FB24] gi|116612445|gb|ABK05169.1| periplasmic sensor signal transduction histidine kinase [Arthrobacter sp. FB24] Length = 575 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 18/219 (8%) Query: 14 LVA--LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L A + + H++ +P+ +I LEL +DE G ED +L + + + L Sbjct: 353 LAAKDNFVATVSHELRTPLTSILGYLELVIDEPGHEDIQAELRIVERNAVYLLGLVNDLI 412 Query: 71 FGYTGSVDS----------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + SV+ L + + ++ Sbjct: 413 AVASESVELVLQETDIAGLLAAAVAADHEKAALCGAALVLDTEEPLTARVDPVRIRQVAG 472 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----ST 175 NL A P GG++T+ + + + + S+ G ++ + Sbjct: 473 NLISNAVKYSPDGGRITVRARRNGEKLVCSITDTGIGMTKEDQEQAFAKFFRSARSRDTA 532 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + +S +L Sbjct: 533 IPGAGLGLPISKTIIEGHGGSISLTSAPGEGTTVSFVLP 571 >gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma proteobacterium NOR51-B] gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma proteobacterium NOR51-B] Length = 512 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++ + + H++ +P+ AI E+L + + + + + I +L Sbjct: 279 SMFLANVSHELRTPLNAIIGYSEMLQDELSDGQQLDQDQFHHDLGTIIFSGRQLLSLIND 338 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQV---------------------SWTGEKIDLSRE 114 +D V + + + E + Sbjct: 339 ILDLSKMETGKMTVSLETVDPAALIYQICDALSPLITQKNNTLTLSIADDLPEMESDPAK 398 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173 +I+ NLF A G I+ + + I +K NG ++ Sbjct: 399 LQQIVTNLFSNACKFTEDGVIEVIARIEKNSLLIA-VKDNGIGIAEAQQANVFEAFEQAE 457 Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + V + E +A L Sbjct: 458 SSTGSKYGGTGLGLAIVREFCRMLGGDITLESTPGKGSTFTATLP 502 >gi|206972478|ref|ZP_03233423.1| sporulation kinase B [Bacillus cereus AH1134] gi|206732638|gb|EDZ49815.1| sporulation kinase B [Bacillus cereus AH1134] Length = 419 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 250 LNRAQEIIDDYLTFAKPAPEKLDQISIKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413 >gi|228933287|ref|ZP_04096143.1| hypothetical protein bthur0009_17540 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826448|gb|EEM72225.1| hypothetical protein bthur0009_17540 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 293 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 235 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 236 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 288 >gi|229170434|ref|ZP_04298103.1| hypothetical protein bcere0007_53610 [Bacillus cereus AH621] gi|228613058|gb|EEK70214.1| hypothetical protein bcere0007_53610 [Bacillus cereus AH621] Length = 300 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 71 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYIDIVSSEIE 130 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +T + + Sbjct: 131 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIQIRIDFTPDIPLIPC 190 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + ++ G E+ + + Sbjct: 191 EGNQLKQVFVNIFKNAIESMPMGGEILIQIDKLDNDQISIRFIDQGCGI-PKERIPYLGE 249 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 250 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTTVEVTLP 294 >gi|108761373|ref|YP_630825.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465253|gb|ABF90438.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 970 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 76/231 (32%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSL----ELL----DEVGIEDEVM 50 + + + L A LL S H++ +P+ + N+L ++L +V + ++ Sbjct: 716 LREAAVRAAENERLAAIGLLTSGFAHEVRNPLNGLMNALLPLKDMLTGGSADVELSKAML 775 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 +++ + + + V + + V V+V Sbjct: 776 EVVEECGQRIRHLAESLLSFTRTSESPVVLSLDSSLDSTLSVLAWKVPPGVKVERAYHCS 835 Query: 110 DLSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + R ++ LNL A ++ G+V IS ++ E I ++ +G PE Sbjct: 836 EPIRGNPGALNQVWLNLLDNALRAVGDKGRVRISTANTAEEAIVTIGDDGVGI-RPEDME 894 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + ++ + + + L Sbjct: 895 RLFQPFFSTRAAGEGTGLGLALSRRIIIQHGGSIALSSVPGEGTQVEVRLP 945 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 6/112 (5%) Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165 + NL A +GG VT+ V++ +E ++ +G + F Sbjct: 430 HVDHERIEIVFQNLLGNALKFTQKGG-VTVRVREDDSEVHVEVEDSGQGIAPQDIPVIFD 488 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + I V + + V L K Sbjct: 489 RFSQADNSGTRRFGGSGIGLALVKETLELHAGGISVTSELGQGSVFHVRLPK 540 >gi|57234548|ref|YP_181367.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] gi|57224996|gb|AAW40053.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] Length = 853 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 76/227 (33%), Gaps = 19/227 (8%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62 + + L ++ + + + H++ +P+ ++ ELL E + +++ + I++ S A+ Sbjct: 622 AQLMITDRLASVGEMAAGLAHELNNPLTSVIGFSELLQEKKLPEDLQRDIQIISQEALRA 681 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLS 112 L F R VD + + + + V+ V+ E Sbjct: 682 AEVIRNLLAFARRHEPSKDWVDMNVLIHKVLDICNYEQRVNNIHIVTNLDADLPEIKADY 741 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++LLN+ + A + + V + S+K +G +I D Sbjct: 742 FQMQQVLLNIIINAEYFITKAHGEGTIVISSSRFGDNIRISIKDDGPGMSEN-VLNRIFD 800 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +L E + L Sbjct: 801 PFFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIELP 847 >gi|313679063|ref|YP_004056802.1| histidine kinase [Oceanithermus profundus DSM 14977] gi|313151778|gb|ADR35629.1| histidine kinase [Oceanithermus profundus DSM 14977] Length = 779 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 18/217 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 A + S + H+I +P+ A+ SLELL + G+E EV +LI + SA + + Sbjct: 110 ARMLSVLAHEIKNPLFAVLGSLELLTQRGLEAEVHKLIETAHTSAQRMHALVNDSLQLVA 169 Query: 76 SVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 G++E V + V + E + R + LL Sbjct: 170 LEQEGVRLKAERLSLNGLLEELAGEVEPVALASGVHLRVVPLRGDAELLGDRRWLLQALL 229 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDS 178 NL + A P GG+V + ++ G + +I + + + Sbjct: 230 NLALNAVKYTPEGGRVVLRAVADGTRVGLQVEDTGPGIAAGDL-ERIFEPFQRADTKKEG 288 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + E L + Sbjct: 289 SGLGLAIVKRVVEAHGGEVRVESQAGRGSRFRVELPR 325 >gi|219847392|ref|YP_002461825.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541651|gb|ACL23389.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 490 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMD-LVA---LLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51 + I LS ++ L + + + H++ +P+ + +LE+L+ + + E++ Sbjct: 244 LTVTINELLSRLERLFSTQQRFVADVSHELRTPLTVMQGNLEVLERGASTDPALVKEMVG 303 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVS 103 +R + I + + L +V L ++ V R+ Sbjct: 304 DMRRETARLIRMVNDLLLLAQSETNVVLRSEPVELDTLLLEVFRELRPLANQVRLRIGAE 363 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + LLNL + A P GG V +S++ + S+ G E Sbjct: 364 DQILVYGDRDRIKQALLNLGVNALQYTPPGGLVILSLERYEQFACLSVADTGIGISEAER 423 Query: 163 --KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V +A + + + L Sbjct: 424 DLIFERFYRVDRSRSRHSGGTGLGLSIVKWVAEAHGGYVTVASEVGRGSTFAIYLP 479 >gi|297579442|ref|ZP_06941370.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae RC385] gi|297537036|gb|EFH75869.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae RC385] Length = 588 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 65/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 349 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 408 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 409 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 468 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 469 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 527 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + L + L + Sbjct: 528 ETLPHLFEPFHTTKKNGLGLGLSISQQILQSMHGTLSVATSPLGGARFTITLPR 581 >gi|149181381|ref|ZP_01859878.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148850944|gb|EDL65097.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 721 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 63/223 (28%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSA 60 + ++ +V L + I H+I +P+ A+ ++LL+ + +I+ Sbjct: 496 QEQLRKSDTLSVVGELAAGIAHEIRNPMTALKGFIQLLENSMQSDHEMYFHVIKTELQRI 555 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + L I + + + + + + + + E Sbjct: 556 ESIITEFLILAKPQAVQYQETDLIRIMKDTLELLNAQAVMHNVQFKERYDKGIPAVFAEP 615 Query: 116 AKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ + ++ ++ E S+ G EK ++ + Sbjct: 616 NQLKQVFINIVKNAIEVMPKGGLISIGISAKNEEEVRISITDEGIGI-PKEKIKKLGEPF 674 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + E L Sbjct: 675 YTTKERGTGLGLMVTFKIVEEHEGTVEVESELGKGTTFHIDLP 717 >gi|34497779|ref|NP_901994.1| two-component sensor [Chromobacterium violaceum ATCC 12472] gi|34332795|gb|AAQ59996.2| probable two-component sensor [Chromobacterium violaceum ATCC 12472] Length = 417 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 66/240 (27%), Gaps = 28/240 (11%) Query: 2 AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEV 49 A ++L + S I H+I P+ AI + + LL++ ++ + Sbjct: 165 ASESRLRQHELELARVTRINTMGEMASGIAHEINQPLSAIMSYCQAGLSLLEDDELDMAM 224 Query: 50 MQLI--------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRV 100 ++ + +F+ V + + + + D + Sbjct: 225 LRRALTSSVSQADRAGRIIHRLREFVTQKNQQLAPVQLNQAVHNALSLLDYELHDHDIHI 284 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKIN 154 + ++ E + + ++ + +A ++ + + N Sbjct: 285 EQNFAPELPLVYADTIQLEQVVLNLARNAVEAMEPTRPWGRLSITTRRQGERVQLIISDN 344 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G P+K +I D + + + +L+ L Sbjct: 345 GCGI-PPDKLDRIFDPFFSTKPNGMGLGLAICQTAVEAFGGKLIAGNKPGSGAEFIIDLP 403 >gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 968 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I L S + H++ +P+ AI +LE+L DE ++++++ + Sbjct: 731 QDISERHEVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIAVSN 790 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE- 114 S + + L +G + + L DI +++ + + + + E + + Sbjct: 791 SERLLRLVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDV 850 Query: 115 -----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL + G KV I V E I ++K G + Sbjct: 851 PNTKILADEETIIQVLTNLLSNSVKFSHAGTKVEIYVTMGDKEIIVAVKDYGKGVPPHKL 910 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +++ ++ E I D L Sbjct: 911 ETIFERFEQVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLP 966 >gi|229145233|ref|ZP_04273623.1| hypothetical protein bcere0012_23900 [Bacillus cereus BDRD-ST24] gi|228638244|gb|EEK94684.1| hypothetical protein bcere0012_23900 [Bacillus cereus BDRD-ST24] Length = 438 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 72/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 206 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 265 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 266 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 325 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++ GG + IS + ++ ++ +G E+ + + Sbjct: 326 NKQHFQQCFLNLIKNSIEAMSNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 384 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 385 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 429 >gi|218533351|ref|YP_002424166.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525654|gb|ACK86238.1| histidine kinase [Methylobacterium chloromethanicum CM4] Length = 676 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 + + + S L ++ + + + H+I +PI I +LE+ E LI Sbjct: 437 LEETRRQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREVLGPAGEEVRTEFDLI 496 Query: 54 RLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + V + + + V D ++ T Sbjct: 497 DQQVHRVNMIVTRLLQFARPDEYAGYVETVVPAEVVTDCLVLVRHLLERADVAIEREDTA 556 Query: 107 EKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160 + ++++NL + A ++P GG + + QD+ + G Sbjct: 557 TRTVEISRTELQQVVINLMVNAIHAMPEGGLLRLKTQDNDYSGREGVAIEVSDTGVGIPA 616 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + L + + + L Sbjct: 617 DRLRKIFDPFFTTRTHGGTGLGLSISYTLIARYGGTITVHSELERGSIFVIRLP 670 >gi|220915791|ref|YP_002491095.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953645|gb|ACL64029.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 373 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 76/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +A+ L S L A+ L S + H++ +P+GAI EL E D+++ Sbjct: 134 LAEARASWLRSEQLAAVGRLASGVAHEVGNPLGAIAGYAELARGRIRAGEAAQADDLVAR 193 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE 107 I + + ++ + + + I L D R ++ + Sbjct: 194 IAVEAGRIDAIVRDLLELARPSAPAVAPIALSGPVDAALRLARVQARLRDVRAELDLPAD 253 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + A++ LNLF+ A ++ G + ++ ++ ++ + G + Sbjct: 254 LPPVLADEARLAQVFLNLFLNAGDAMGGRGTLRVTAREVQDRVEIDVADQGPGIGPEDLP 313 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ D + + L + V L + Sbjct: 314 -RVFDPFFTTKPPGAGTGLGLSVSHRLMEAMGGAISAANAPGGGAVFRLRLRR 365 >gi|78223759|ref|YP_385506.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] gi|78195014|gb|ABB32781.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] Length = 363 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--------S 59 + L L L + + H+I +P+G I + +LL+ + ++ + Sbjct: 131 HADRLSTLGTLAAGLAHEIKNPLGGIKGAAQLLEMELPPESELRDNVRVVVREVDRVNRI 190 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRER--- 115 L V+ LGDI + + Q + + + Sbjct: 191 VEELLALSSPRKLQLTKVNLHKILGDIVTLRKRATEGKSVTFQQQFDPSIPPILADEGLL 250 Query: 116 AKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEK 163 ++ LNL A ++ G +T + ++ +G E+ Sbjct: 251 TQLFLNLIKNAVEAVDERGTIRVASRVLSDYSMTPKGERRSRMVAVDVRDDGPGI-PREQ 309 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + + E++ L E + +L Sbjct: 310 LEQLFTPFFTTKAKGTGLGLAICQKIVTEHRGMLKVESDPGTGTTFTVMLP 360 >gi|229102594|ref|ZP_04233298.1| hypothetical protein bcere0019_17520 [Bacillus cereus Rock3-28] gi|228680821|gb|EEL34994.1| hypothetical protein bcere0019_17520 [Bacillus cereus Rock3-28] Length = 351 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLAEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSGGTITIRLKEHETVVQVHIRDSGIGISEEQKQHV 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + K Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHEGEIKVESEEGNGTEFIVCIPK 347 >gi|188582205|ref|YP_001925650.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179345703|gb|ACB81115.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 622 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 67/240 (27%), Gaps = 27/240 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 K++ L S + AL L I HD + + AI SLEL + + ++ Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R + VD + + + + RV+ Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGSLVRVERDLEPGMPF 365 Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++ L + + + R + ++ G Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEIHDDPDLKPGTYAVVTVADEGTG 425 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++ + + + V LA + RL + L + Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484 >gi|308535166|ref|YP_002137294.2| GAF domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|308052511|gb|ACH37498.2| LOW QUALITY PROTEIN: sensor histidine kinase response regulator, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 837 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 74/242 (30%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 M + + + + + L S + HD + + AI L LD I + + + + Sbjct: 444 MTEQLRQS-QKREAIGELASGVAHDFNNLLTAIIGFASLAQANLDPGTIPFQYLDEVLNA 502 Query: 57 SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 S A + + R VD +G +E+++ I+ ++VS E + Sbjct: 503 SERATYLTRGLLAFGRNQAANPQPVDLNRIVGQMEKLLGRLISRQIELKVSLCHESPTVL 562 Query: 113 RER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154 + ++++NL A ++ V+ S++ Sbjct: 563 ADAGQLDQVVMNLATNARDAMNNAGVLTIETAVVTFPPDSDRAHGVKRGGRYARLSVRDT 622 Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + ++ + + + V + +N + E Sbjct: 623 GRGMDEATRG-RLFEPFFTTKETGQGTGLGLAIVQGIVQQNGGFIEVESTPGEGACFLIH 681 Query: 213 LE 214 L Sbjct: 682 LP 683 >gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 582 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69 + + H++ +P+ +I E L + + + +I S ++ + Sbjct: 361 FVANVSHELKTPVTSIKGFAETLLDGAMKDEAALEHFLTIILKESERLQTLVEELLDLSK 420 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLN 121 + + + K + +ILLN Sbjct: 421 IEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLVIRGDRNRMKQILLN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A P G+V + ++++ E + +K G E +I + Sbjct: 481 LLANAITYTPEHGRVAVEAEETEKEVLIHVKDTGIGIEEKEIP-RIFERFYRVDKARSRD 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + V + K Sbjct: 540 SGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579 >gi|218232135|ref|YP_002367377.1| sporulation kinase B [Bacillus cereus B4264] gi|218160092|gb|ACK60084.1| sporulation kinase B [Bacillus cereus B4264] Length = 389 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 157 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 216 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 217 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 276 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 277 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 335 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 336 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 380 >gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 842 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 77/236 (32%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56 ++I + + S + H++ +P+ +I SL LL+ +++++ R + Sbjct: 341 RDITERKAVERMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDIPPQALDMVRIARTN 400 Query: 57 SMSAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + I + + D + + + D V +V+ T Sbjct: 401 TERLIRLINDILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVTGT 460 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 + ++L NL A P+G VT+ V ++ FS+ G E+ Sbjct: 461 PQVKADRDRLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGI-SQEQR 519 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + ++ R+ E + + LE Sbjct: 520 ARLFGRFQQLDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEEGRGSTFTFTLE 575 >gi|23099135|ref|NP_692601.1| sporulation kinase C [Oceanobacillus iheyensis HTE831] gi|22777363|dbj|BAC13636.1| sporulation kinase C (sensor kinase) [Oceanobacillus iheyensis HTE831] Length = 364 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 67/218 (30%), Gaps = 9/218 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 +++ M++ L + I H+I +P+ ++ L+LL + +++ I Sbjct: 147 EDMMVRSEKMNVAGQLAAGIAHEIRNPLTSLKGFLQLLQAGVNHKEEYFKIMIEEIEKIE 206 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 L + + D+ ++ V + +R++ Sbjct: 207 SITSELLFISKPLTDNRTDEIISDMINDVIMLLSPQAKQKNIRIVKLGVCNQTIVCDRSQ 266 Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 I L A ++ GG++ I+ +D ++ I S+ G ++ + + Sbjct: 267 IKQVLINLVKNAIEAMDNGGEIIITSEDVEDNVIVSVIDEGIGIPEG-ILHKLGEPFFTT 325 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + D + Sbjct: 326 KQTGTGLGLLITKQILEAHNANFEVSNNHDKGSTFKLV 363 >gi|114049449|ref|YP_739999.1| periplasmic sensor signal transduction histidine kinase [Shewanella sp. MR-7] gi|113890891|gb|ABI44942.1| periplasmic sensor signal transduction histidine kinase [Shewanella sp. MR-7] Length = 711 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAESVKEEIDLV 511 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWLQQDMPIGVKIEVEDEGSGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + + L Sbjct: 631 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684 >gi|296503213|ref|YP_003664913.1| sporulation kinase B [Bacillus thuringiensis BMB171] gi|296324265|gb|ADH07193.1| sporulation kinase B [Bacillus thuringiensis BMB171] Length = 422 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 249 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 250 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413 >gi|262383741|ref|ZP_06076877.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262294639|gb|EEY82571.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 483 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 51/227 (22%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ +L L + + + H+I +P+ AI ++L + Q I + + Sbjct: 253 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 308 Query: 62 IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 + + D + + K V++ Sbjct: 309 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISKNVRLILDDSPNVSL 368 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + IL L A +G F + GN + Sbjct: 369 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 428 Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + S L Sbjct: 429 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 475 >gi|258515159|ref|YP_003191381.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778864|gb|ACV62758.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 535 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 68/224 (30%), Gaps = 13/224 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + I L ++LV + + I H++ +P+ + L+LL + + L Sbjct: 308 MEQEIA-RLDRLNLVGEMAASISHEVRNPMTTVRGFLQLLQKKEDCKKYNDYFNLMIEEL 366 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKID 110 + + + +I V ++++S Sbjct: 367 DRANSIITEFLSLAKDRPLDLIMNNINSVVEILQPLIIAHAVLYDTTVKIELSEIPNLYL 426 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +E +++LNL ++ G +TIS + I ++ G E I Sbjct: 427 DEKEIRQLILNLVRNGLEAMSPGKTLTISTYIENDTVILAVGDQGEGI-KSEIMAMIGTP 485 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + R+ + D + Sbjct: 486 FFTTKEQGTGLGLAVCYRIAARHNARINIK-TDSTGTTFEVRFK 528 >gi|255280496|ref|ZP_05345051.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] gi|255268961|gb|EET62166.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] Length = 395 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 69/243 (28%), Gaps = 28/243 (11%) Query: 1 MAKNI----CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 M + + + L S I HD+ +PI AI +E + + D ++ Sbjct: 149 MRRRLYESNEEKIQYDRESKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDHYIR 208 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------K 98 I + + + + + + Sbjct: 209 TIYNKANDMDRLINELTFYSKIDTNRIPYTFNKINVSSYFEDCCEEVGLDLESKNIDFSY 268 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNL 157 V E I + + +++ N+ + + + ++ I V+D + ++ NG Sbjct: 269 FNYVDENVEVIADAEQMKRVINNIIGNSIKYMDKPKGRINIRVKDVGDFVQIEIEDNGRG 328 Query: 158 ARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E F + + I V + ++ ++ V+ + Sbjct: 329 IGPKELPYIFDRFYRTDASRNSSMGGSGIGLSIVKKIVEDHGGKIWATSKPGTGTVMYFV 388 Query: 213 LEK 215 L K Sbjct: 389 LRK 391 >gi|57233903|ref|YP_182005.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] gi|57224351|gb|AAW39408.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] Length = 394 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K++ S L ++ L + + H+I SP+ +I E L +E + I Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107 A+ F R + ++ E + V V Sbjct: 187 EALRAAKVIDNLRTFARSYQQEKKLCGLNEIIRKSVELREYELVVQNIVVELELAENLPA 246 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164 + + ++L+N+ + A ++ + Q+ N ++ NG PE Sbjct: 247 TLLDFYKIQQVLVNMILNAEQAMYQAHGRGRLLIKTQNMGNYIRMIIEDNGPGI-SPEIA 305 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + D + + E+ ++ E L Sbjct: 306 EKVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKIQLESKLGQGTRFIIDLP 357 >gi|39996044|ref|NP_951995.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982809|gb|AAR34268.1| sensor histidine kinase, putative [Geobacter sulfurreducens PCA] gi|298505066|gb|ADI83789.1| nitrogen fixation transcript antitermination sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 248 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 66/225 (29%), Gaps = 18/225 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61 + + + L + + + H++ +P+ I ++ ++ L E G+ D V +++ + A Sbjct: 20 LELLAFNEKMAELGRMAAGVVHELNTPLSVIVSATQMILREEGLPDFVREMVERVNQEAH 79 Query: 62 IRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-- 112 R D L + ++ + ++ Sbjct: 80 RLSDMTKGVLSFTRRDVSDHQEADVNQVLREAMTLLRYEAHKRSIAVIEDLDYRLPFIAA 139 Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169 ++++NL M A ++ GGK+ I + + G E I Sbjct: 140 DANRAKQVIINLVMNALQAMGEGGKLFIRTSQNGEGGVTVQVTDTGPGI-PAELLGHIFT 198 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + L + E + Sbjct: 199 PFFTTKEPGEGTGLGLFITRKLMESVGGAIAVESTVGEGTSFTLT 243 >gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 849 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 33/245 (13%) Query: 3 KNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEV---GIEDEVMQ 51 K + + A +R + H++ +P+ A+ +LL + ++ + Sbjct: 571 KQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFSDLLLSETAGPLNEKQKR 630 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 S S L + + I L I I +RV S + EK Sbjct: 631 YTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVIEEVRRVLSSLSAEKNIR 690 Query: 112 SR---------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + +IL NL A GKV I + + S+K G Sbjct: 691 IEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIKARSEGDMVEISVKDEGI 750 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + ++ + + V + ++ E + Sbjct: 751 GINEAD-YARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHGGQVWVEASPGKGSTFT 809 Query: 211 ALLEK 215 + K Sbjct: 810 FRIPK 814 >gi|229095038|ref|ZP_04226034.1| hypothetical protein bcere0020_2960 [Bacillus cereus Rock3-29] gi|228688368|gb|EEL42250.1| hypothetical protein bcere0020_2960 [Bacillus cereus Rock3-29] Length = 671 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E I ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEENIYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + ++ +V + E + Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNLIIHDTIPLIKIDTHNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGQVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|229113991|ref|ZP_04243417.1| hypothetical protein bcere0017_2970 [Bacillus cereus Rock1-3] gi|228669450|gb|EEL24866.1| hypothetical protein bcere0017_2970 [Bacillus cereus Rock1-3] Length = 672 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E I ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEENIYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + ++ +V + E + Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNLIIHDTIPLIKIDTHNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGQVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|224535278|ref|ZP_03675817.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus DSM 14838] gi|224523086|gb|EEF92191.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus DSM 14838] Length = 755 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 58/235 (24%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 MA+ + +L L + + H+I +P+ AI ELL + DE + + Sbjct: 378 MAQELKEMKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELLVDSDDPDEKKEYWHII 437 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + ++ ++ I V Sbjct: 438 ESNNDLLLRLINDILDLSKIESGIIDRKRERFNLTQLCNELYVMMRSKIPNADVELVQDN 497 Query: 106 GEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +N A G + + K+ F ++ G Sbjct: 498 PCPECWIFLDSNRLKQVWMNFLTNAVKYTRS-GYIRMGYSVEKDGIRFYVEDTGTGI-PK 555 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + A + Sbjct: 556 ELQDRVFGRFQKLNEFVQGTGLGLAISRAIVEAAGGEIGFTSEQGIGSTFWAWVP 610 >gi|206889948|ref|YP_002248935.1| two-component sensor histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741886|gb|ACI20943.1| two-component sensor histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 536 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 67/222 (30%), Gaps = 12/222 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 L +A + + H+I +P+ AI S L + + + + + Sbjct: 312 KEKLRLEKSSAMAEMAMTVAHEIKNPLNAIKASTSYLKANFQGEVLKEFLSIIDKETERL 371 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + Y V G+I V + +K +Q + + + Sbjct: 372 NELITSFLSYARPVPLKYEKGNINNALKDVIKLVETEIKEENKILQTDFDPSIPEFYFDH 431 Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +I + A + +G + I + + ++K +G E +I + Sbjct: 432 HQIKQAVLNLLVNATDATEKGDTIMIKTERIDGKIKITIKDSGTGI-PEELMGKIFEPFF 490 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +++ + + + L Sbjct: 491 TTKTTGSGLGLACVERIIKDHEGNIKVTSKLNEGTEFTIELP 532 >gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1691 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 62/254 (24%), Gaps = 41/254 (16%) Query: 1 MAKNICFNLSSMDLV------------------ALLCSRICHDIISPIGAIHNSLELLDE 42 + K + + ++L + + + H+I +P+ AI + ELL E Sbjct: 1283 LEKQVRMRTAELELATREAELRKDEAEAGNRAKSEFLAIMSHEIRTPLNAILGTHELLSE 1342 Query: 43 VGIEDEVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDI 86 + E +L+ +S + + + + I Sbjct: 1343 SALSSEQQRLMEISRNAGELLLNLVNETLDLAKIEAGKLDLEYTIFDLPRLVEEITQIKR 1402 Query: 87 EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146 + ++ + + + +IL+NL A G + + Sbjct: 1403 VAAEHKGVRLESEMALEVPRFVMGDPDRLRQILVNLLSNAIKFTNSGTVSLQMSRGVADR 1462 Query: 147 NIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPE 200 F + G +I + L + E Sbjct: 1463 TFFKVSDTGVGI-AAHSMEKIFHPFTQADTSTTRKFGGTGLGLTICKHLCEAMGGDIQVE 1521 Query: 201 IIDDHNVVLSALLE 214 S L Sbjct: 1522 SQVGVGSTFSVNLP 1535 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 64/243 (26%), Gaps = 31/243 (12%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + K++ LS+ + + + + H+I +P+ A+ +L + +V + + Sbjct: 385 LLKSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDLALRGDLSPKVRDYLEKT 444 Query: 57 SMSAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVD-----KRV 100 ++ + + + D L + + A Sbjct: 445 KNASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQAADHAVDLVFLA 504 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGN 156 +++ + +I +NL A G + + + S+ +G Sbjct: 505 PLNFNQVLYGDAMRLEQIFINLIRNAVKFTKNGFITVRAQPELLEGHRVRLTCSVSDSGI 564 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 PE+ + + V L + E Sbjct: 565 GI-DPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSVWAESEPGKGSQFH 623 Query: 211 ALL 213 + Sbjct: 624 FEI 626 >gi|229079823|ref|ZP_04212355.1| hypothetical protein bcere0023_24750 [Bacillus cereus Rock4-2] gi|228703407|gb|EEL55861.1| hypothetical protein bcere0023_24750 [Bacillus cereus Rock4-2] Length = 360 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|229163665|ref|ZP_04291613.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803] gi|228619802|gb|EEK76680.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803] Length = 484 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTG 106 + + + L +V+ + + + IE++ D + + Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEIHLQLHA 360 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 ++ + +++ NL + + + K S N I + NG+ Sbjct: 361 SPQYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + L+K Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLKK 478 >gi|302341533|ref|YP_003806062.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638146|gb|ADK83468.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 993 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 + M+ + L + HD + + AI +L+ D+ ++ R Sbjct: 611 QAQLQRAQRMEAIGTLAGGVAHDFNNILQAISGYTQLIGGHPGLDQKVRRYAEDIDLAAR 670 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 ++ L F R VD + ++E I R+ + + + Sbjct: 671 RATDLVKRLLTFSRKVEPALQKVDLNRQIDHAVAMLERTIPKMVRITTRLDPDLKAVKAD 730 Query: 115 ---RAKILLNLFMVAHASLPRGGKVTI---------------SVQDSKNENIFSLKINGN 156 ++L+NL A ++P GG++ I + + + +G Sbjct: 731 PGQMEQVLMNLGTNARDAMPEGGELMIETQNVRAEDLSPGAACQLTADEYVMLRVSDSGM 790 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + V + + R+ V L Sbjct: 791 GM-DAETQKKIFDPFFTTKGVGQGTGLGLSIVYGIIEGHGGRISCYSQPGQGTVFEICLP 849 >gi|283836742|ref|ZP_06356483.1| sensor protein ZraS [Citrobacter youngae ATCC 29220] gi|291067295|gb|EFE05404.1| sensor protein ZraS [Citrobacter youngae ATCC 29220] Length = 461 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 70/228 (30%), Gaps = 17/228 (7%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRL 55 K + + L+AL L + + H+I +P+ +I E G E+ Q++ Sbjct: 228 KELQDAMKRKEKLMALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAK 287 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT-----GE 107 + + + + L + A + +Q+ + Sbjct: 288 EADRLNRVVSELLELVKPAHLTLQQVDLNEAITHSLHLVSQDAASREIQLRFAANSTLPT 347 Query: 108 KIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++LLNL++ A ++ R + + S + +G E+ Sbjct: 348 IQADPDRLTQVLLNLYLNAIHAIGRQGTITVEARESSAERVKIVVIDSGKGI-AAEQLET 406 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + V + ++ + ++ + L Sbjct: 407 IFTPYFTTKADGTGLGLAVVQNIIEQHGGTIQVASVEGKGATFTLWLP 454 >gi|253700851|ref|YP_003022040.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251775701|gb|ACT18282.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 552 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----------EVM 50 K + S +VAL + + + H++ SP+ I + ++L ++ +++ Sbjct: 312 KMEAQLVQSAKMVALGVMAAGVAHELNSPMTVIIGTAQMLAREMQQEGDSEGAEALSDII 371 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R +D + + +I+ I + + Sbjct: 372 NCGLRCKRIIQNLLTFSRQDQVPVMEIDLNAEVERVLDMIQYQINRSQIAIFEHFNRDLP 431 Query: 111 LSR----ERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLA 158 + + ++L N + A +L ++ + + S+ NG Sbjct: 432 MMNANGPQIQQVLTNFLINARDALAEVEGKEKVIEVSTALRVEGERRFAVLSVADNGVGI 491 Query: 159 RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I S + + +A + R+ + S +L Sbjct: 492 -AKENISKIFTPFYTSKEASKGTGLGLSVSLGIAESHNGRIEVDTELGQGSCFSLILP 548 >gi|114765347|ref|ZP_01444464.1| phosphate regulon sensor histidine kinase, putative [Pelagibaca bermudensis HTCC2601] gi|114542327|gb|EAU45356.1| phosphate regulon sensor histidine kinase, putative [Roseovarius sp. HTCC2601] Length = 346 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 13/240 (5%), Positives = 57/240 (23%), Gaps = 33/240 (13%) Query: 9 LSSMDLVALL----CSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59 ++ ++ + + + H++ +P+ A+ +E L ++ D + ++ + Sbjct: 105 ITHLEQAGQMRRDFVANVSHELRTPLTALLGFIETLRGPAREDAAARDRFLGIMEDEAGR 164 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKID 110 + + + ++ ++ Sbjct: 165 MERLVGDLLSLSRVEAEERVRPTEPVDLAGLVRSAIRGLAPLAEDAGVTLETDAPEAVLE 224 Query: 111 LSRERAKILLNLFM---VAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++ + + + ++ G Sbjct: 225 VPGDADQLRQVVVNLIENGVKYSGRGAEVRVHLAEPAYQPRLRGQGVELAVTDTGPGINP 284 Query: 161 PEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + + ++ RL E LL + Sbjct: 285 IHIPRLTERFYRVDSHRAREMGGTGLGLAIVKHIINRHRGRLKIESAPGKGTTFRVLLPR 344 >gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] Length = 882 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 58/237 (24%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + ++ + + H+I +P+ I E+L + + ++ +S+ Sbjct: 377 AKENAEAANQAK--SVFLANMSHEIRTPLNGIMGMTEILSDSRLNSSQKDILSDIDVSSH 434 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105 L + + + L + + + + Sbjct: 435 ALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKALKQQVELRATLSPDIP 494 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPE 162 +IL+NL A G + ++ S+ G + Sbjct: 495 DSLYIDEFRFKQILMNLLSNAVKFTQDGSVSVVVKLMNEGEKAYLHCSVVDTGVGINEEK 554 Query: 163 KFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G++ + +A + S ++ Sbjct: 555 LEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITASSTPGLGSRFSFVIP 611 >gi|229182984|ref|ZP_04310216.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1] gi|228600441|gb|EEK58029.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1] Length = 463 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 62/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E + ++ + + + ++ F Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKETTSPKQRLRYLSIIKDESDYITNLVQDLFSLA 296 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 297 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 356 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 357 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 416 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 417 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 455 >gi|149179489|ref|ZP_01858038.1| probable two-component sensor histidine kinase FixL [Planctomyces maris DSM 8797] gi|148841676|gb|EDL56090.1| probable two-component sensor histidine kinase FixL [Planctomyces maris DSM 8797] Length = 520 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 26/238 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-------------EVGIED 47 + + S L + L + + H+I +P+ AI + E L + + + Sbjct: 275 ERSKQLVRSERLAGIGVLAAGVAHEINNPLSAISMASESLQGRIVDLKPHCEDADFEVVE 334 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRV 100 + + LI+ SM + SV S + + +I+ + Sbjct: 335 QYLSLIQRESMRCREITSKLLDFSRGQNSVRSQNDLVGVIDEVCSMVNLIKRLKGRNIHF 394 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 V E +++LN+ A S+ GG + I V++ + + +G Sbjct: 395 SVRNPCCAEFNPAEIKQVVLNIMTNALESMEVGGNLEIEVREHVDSVTLIFRDDGRGM-T 453 Query: 161 PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215 E + D D + + ++ + E + L K Sbjct: 454 QEVKESLFDPFFTQRADGTGTGLGMSITHRIVKDHGGEIEVESPGPGQGSTIFVELPK 511 >gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] Length = 884 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + ++ L + I H++ +P+ I + +E + + + + L Sbjct: 363 MRRRLEEEATNAKL--QFFTNISHELRTPLTLIADPVEHIIDDDNLTRQQRNMLLIVRRN 420 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWT 105 + L + + + + + + Sbjct: 421 VNVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELHAASP 480 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +I NL A P GG++T S + + G E Sbjct: 481 LSIRADIYKVERICYNLLSNAMKYTPEGGRITFSAVTEGDFVHIGVTDTGIGMTRDEAAH 540 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V A +K + E + L Sbjct: 541 VFERFYQVRHPHKGGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLP 591 >gi|255014696|ref|ZP_05286822.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 491 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 51/227 (22%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ +L L + + + H+I +P+ AI ++L + Q I + + Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316 Query: 62 IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 + + D + + K V++ Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISKNVRLILDDSPNVSL 376 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + IL L A +G F + GN + Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436 Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + S L Sbjct: 437 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483 >gi|238892479|ref|YP_002917213.1| sensor protein ZraS [Klebsiella pneumoniae NTUH-K2044] gi|238544795|dbj|BAH61146.1| sensor kinase of Zn/Pb responsive two-component regulatory system [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 464 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQ 51 ++ L + LVAL L + + H+I +P+ +I E G ++ Q Sbjct: 223 RRSRKQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTSPGGESHQLAQ 282 Query: 52 LIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 ++ + L+ +R A +VD + Q++ + Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQTVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 ++LLNL++ A ++ R G + ++ ++ + + +G E Sbjct: 343 ELTTISADPDRLNQVLLNLYLNAMQAIGRDGVIRVTASEADRQRVKIVVTDSGKGMSDEE 402 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + V + ++ + E + + L Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453 >gi|228987920|ref|ZP_04148028.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771843|gb|EEM20301.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 484 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSIDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3] gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3] Length = 508 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 20/252 (7%), Positives = 64/252 (25%), Gaps = 38/252 (15%) Query: 1 MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49 M+ + + + + + H++ +P+ AI E+L + ++ Sbjct: 247 MSDKLRRAIDEEKDAKLSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDETP 306 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 + + + I L +L +D ++++ + + ++ Sbjct: 307 IDRKQYQNDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVKEQFHPGEALTMAVDALAP 366 Query: 106 -----------------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NEN 147 + + + +I++NL A G + Sbjct: 367 LLRRNGNVLQCDDFSTLPMINNDAVKFRQIIVNLLSNAAKFTAEGMIRVSASFTQATQHL 426 Query: 148 IFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEII 202 ++ G + F V + ++ + ++ Sbjct: 427 EITVSDTGIGMTPEQQALVFEAFVQADDATSNTYGGTGLGLAICRDFCELMGGQISVASE 486 Query: 203 DDHNVVLSALLE 214 + L Sbjct: 487 PGEGSTFTVSLP 498 >gi|150008868|ref|YP_001303611.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149937292|gb|ABR43989.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 491 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 51/227 (22%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ +L L + + + H+I +P+ AI ++L + Q I + + Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316 Query: 62 IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 + + D + + K V++ Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISKNVRLILDDSPNVSL 376 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + IL L A +G F + GN + Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436 Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + S L Sbjct: 437 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483 >gi|117922506|ref|YP_871698.1| ATPase domain-containing protein [Shewanella sp. ANA-3] gi|117614838|gb|ABK50292.1| ATP-binding region, ATPase domain protein domain protein [Shewanella sp. ANA-3] Length = 711 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAESVKEEIDLV 511 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWLQQDMPIGVKIEVEDEGSGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + + L Sbjct: 631 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684 >gi|118578514|ref|YP_899764.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118501224|gb|ABK97706.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 748 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 +N N ++ + +L I HD + + I ++ + L G D+++ +++ Sbjct: 368 QNRLLNAQRLESLGVLAGGIAHDFNNILTGIMGNISMARMVLAMPGKSDKLLDNAEKAAL 427 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSR 113 A + V + + I V+ + Sbjct: 428 RATELATQLLTFAKGGAPVKKTVSIRKIVDESLSLAIRGTNVKGVVQLPDSLHDIEADEG 487 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLARFP 161 + +++ N+ + A ++P GG++++ + + S G Sbjct: 488 QVSQVFNNIVINAVQAMPGGGEISVHGMNVVLGSENRFILPPGDYVKLSFTDQGCGM-PE 546 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + V + + + + LL Sbjct: 547 DVRKKIFDPYFTTKSHGMGLGLASVHSIVKRHGGYIDVRSTIGEGTTFTLLLP 599 >gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1278 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 58/240 (24%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +M + + + H+I +P+ AI +LL + + S Sbjct: 784 LKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSFPSGKEASYLDAIRSSG 843 Query: 61 IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104 L VD + +I + + + + Sbjct: 844 KNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFILDYAPAL 903 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLAR 159 ++L NL A +G ++SK + S++ G R Sbjct: 904 PPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGTLHTEESKVDLTISVEDTGIGIR 963 Query: 160 FPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ + + L + E + + Sbjct: 964 PEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVRIP 1023 >gi|225866653|ref|YP_002752031.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|225790643|gb|ACO30860.1| sensor histidine kinase [Bacillus cereus 03BB102] Length = 484 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + L+K Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478 >gi|197119089|ref|YP_002139516.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088449|gb|ACH39720.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 592 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 58/226 (25%), Gaps = 19/226 (8%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60 + S + A L + I H++ +P+ I +L ++ +I + Sbjct: 361 QLVHSEKMAAFGSLGAGIAHEVKNPLAGILGITQLSLRGAGAGHPLEKNLLIIEKETKRC 420 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + S + L + V +V+ Sbjct: 421 KTIIEHLLKFARQEQVEFSEVDLQQVVADALAIVDHQLGINSIKVEQELEPGMPTCRGNA 480 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDG 170 ++ L + + T +V+ S + NG E +I D Sbjct: 481 NQLQQVLMNLMLNAQQAMSGKTGTVKLSGRRLEKGGVELRVADNGPGI-SKEIQGKIFDP 539 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + L Sbjct: 540 FFTTKPAGQGTGLGLSVTYGIVKDHGGEIHLESEEGLGTTFIITLP 585 >gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 812 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + S L + + I H+I +P+ AI +LL D+ ++E + I+ ++ Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + V + Q + + + +Q+ Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 S +++ N A RG D++ + ++ G E Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + +S + + + + + L Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804 >gi|206579291|ref|YP_002241056.1| sensor protein ZraS [Klebsiella pneumoniae 342] gi|206568349|gb|ACI10125.1| sensor protein ZraS [Klebsiella pneumoniae 342] Length = 464 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIR 54 ++ L + LVAL L + + H+I +P+ +I + + E QL + Sbjct: 223 RRSRQQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPPGGEAQQLAQ 282 Query: 55 LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 + + A + + R A VD + Q++ + Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQPVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 + ++LLNL++ A ++ R G + +S ++ + + +G E Sbjct: 343 ELTTINADADRLNQVLLNLYLNAMQAIGRDGVIHVSASEADRQRVKIVVTDSGKGMSDEE 402 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + V + ++ + E + + L Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453 >gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 723 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56 MA+++ L + S + H++ +P+ + LE + + + ++ L Sbjct: 474 MAEHLE-RLEKQRRA--MVSDVSHELRTPLSNLRGWLEAAQDGVADLDRERMGMLVGETL 530 Query: 57 --SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGEK 108 G + G + + + D + + V + Sbjct: 531 LLQDIVDDLQDLALADAGKLRLSPEPVDAGALVEQVVDSQRLRAAGAGLRLVAEAGDVVV 590 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 + +++ NL A P G VT+ + S E + + G + F Sbjct: 591 VADRTRLVQVVGNLLGNALRHTPAPGTVTVRARRSGGEAVVEVADTGVGIPAEDLPHVFD 650 Query: 166 QIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L + + E + + L Sbjct: 651 RFWRADKSRNRRTGGSGLGLAIVRNLVELHGGSVAVESVVGEGTTFTVRLP 701 >gi|20141027|sp|Q9APE0|ZRAS_KLEOX RecName: Full=Sensor protein zraS gi|12584124|gb|AAG59806.1|AF305914_1 HydH [Klebsiella oxytoca] Length = 462 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61 LVAL L + + H+I +P+ +I + + + E QL + + A Sbjct: 229 QEATARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPADGEAHQLALVMAREAD 288 Query: 62 IRLKFM-------RLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSR 113 + + R A SVD + Q++ +D + + + + Sbjct: 289 RLNRVVSELLELVRPAHLKYQSVDLNEVITHSLQLVSQDAASRAISLTFTAQPALCRIQA 348 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169 + ++LLNL++ A ++ R G +T++V++ + S+ +G E+ I Sbjct: 349 DPDRLKQVLLNLYLNAVHAIGREGVITVAVRECGDGRVKVSVADSGKGM-TAEQLQAIFT 407 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + E + + L Sbjct: 408 PYFSTKADGTGLGLAVVQNIVEQHGGTIDAESAPGKGALFTFYLP 452 >gi|298242874|ref|ZP_06966681.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555928|gb|EFH89792.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA ++ S L L S I H++ +P+ I LE + + V+ I +M Sbjct: 228 MADSLE---RSEHLRRQLLSNIAHELRTPLTNIRGYLEAFQDQVITPDPAVIASIYEEAM 284 Query: 59 SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + ++ + D + + + + + ++ Sbjct: 285 LLSRMVTDLQDLALAEAGQLRLQRVHIALEDVITKAINALSLQAENKKISFSANIAPNLP 344 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ +I+ NL A P G+V +S + + E S++ NG Sbjct: 345 LVEADAQRVGQIMRNLLNNAIKYTPEQGEVRVSARALQKEIQVSVRDNGMGIAAEHLPYI 404 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + R+ E L Sbjct: 405 FKHFYRADTSRTRETGGSGLGLAIVEQLVCAHGGRITVESYVGQGTCFIFTLP 457 >gi|52140833|ref|YP_085996.1| sensor histidine kinase [Bacillus cereus E33L] gi|51974302|gb|AAU15852.1| sensor histidine kinase [Bacillus cereus E33L] Length = 484 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + + + L + + + + ++ +S Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKECIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|116621917|ref|YP_824073.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225079|gb|ABJ83788.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 650 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + LS L +L L I HD + +G+I E+ LD+ E ++ I+ Sbjct: 268 LRRTQEEALSREKLDSLAVLTRGIAHDFNNLMGSILAEAEVADAELDQGLSPREELRQIK 327 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + + +V + ++ +++ I+ + V + Sbjct: 328 RVAVRASEVVRELMIYSGQEHTSFETVKLSALVEEMLELLRVSISKRAVLHVDLRPDLPA 387 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLARFPE 162 + +I + + + G+ + + + G E Sbjct: 388 VRGNPTQIRQIVMNLIINASQAIGEAHGEICVRTSLAPNSPHDYVRLEISDTGCGISDEE 447 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D H + V + +K + LL Sbjct: 448 R-AKIFDPFFTRKPGGHGLGLAVVQGIVAAHKGVINVMSKPGKGATFEVLLP 498 >gi|329735733|gb|EGG72014.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU028] Length = 610 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 65/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + R + I + + Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDKELAPSFLSVTREETERMIRLVNDLLQLSK 440 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ ++ ++ N+ Sbjct: 441 MDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 500 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A V V+ + N +++ NG + F + + Sbjct: 501 ITNAMKYSRGEKCVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599 >gi|298375903|ref|ZP_06985859.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298266940|gb|EFI08597.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 491 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 51/227 (22%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ +L L + + + H+I +P+ AI ++L + Q I + + Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316 Query: 62 IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 + + D + + + V++ Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISENVRLILDDSPNVSL 376 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + IL L A +G F + GN + Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436 Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + S L Sbjct: 437 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483 >gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] Length = 620 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + + + + + + + H+I +P+ AI LL + + DE L R + Sbjct: 385 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEKDLTDEEKDLFRNTINK 444 Query: 60 AIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 M F + L + ++ + Sbjct: 445 NSNLLLKLINDILELSRIESGRMSFTFDDCALNELLEEIYQTHHLLMPSNIRFLKEFQES 504 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ N A + + + + E ++ G + Sbjct: 505 ELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGYVYKKEEKEAHIFVEDTGKGMSEEAQ 564 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A R+ + + ++ Sbjct: 565 KKVFERFFKADEFAQGTGLGLSICQTIAERLDGRITLASQEGKGSCFTLIIP 616 >gi|134299359|ref|YP_001112855.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052059|gb|ABO50030.1| GAF sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 560 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 24/233 (10%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + S L A+ + + + H++ SP+ AI +LL ++ I+ Sbjct: 320 QSQLVQSAKLAAVGEMAAGVAHELNSPLTAILGDSQLLLRKFGQEHASYPMLVDIKNCGT 379 Query: 59 SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 L F R + SV + + ++ I + +++ Sbjct: 380 RCKRIIQNLLAFSRQEQYHNESVCLNQVVENSLALVSYQIEKTNIRIKTNIHQELSPILG 439 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEK 163 ++ ++++N + A +L I++ NE S+K NG Sbjct: 440 NKQQLEQVVVNFLLNAKDALYGDPAGIITITTGSLPKDSEVNEVFISVKDNGCGIEQSNI 499 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + +A + R++ + S ++ Sbjct: 500 S-KIFNPFFTTKENFKGTGLGLSVSLGIAQSHGGRIVVQSELGQGSTFSLIIP 551 >gi|310827230|ref|YP_003959587.1| multi-sensor signal transduction histidine kinase [Eubacterium limosum KIST612] gi|308738964|gb|ADO36624.1| multi-sensor signal transduction histidine kinase [Eubacterium limosum KIST612] Length = 585 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 67/221 (30%), Gaps = 23/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +PI I +E + + +I S + + + Sbjct: 361 FVANVSHELKTPITTIRGFIETIQENHITDEATLGRFYSIIADESERLTRLVNDILILSH 420 Query: 73 YTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + ++ + DI ++ + ++ R Q I + +++ Sbjct: 421 LENNQRSGEDKREVIGVNQEILRIFDILKMTAESKRIELRYQKEGDISVIINPDDFRQMM 480 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 +NL A GG+V +SV ++ ++ G + F + + + Sbjct: 481 INLVDNAIKYTDEGGRVDVSVYENGAHFCILVEDTGCGIPEEDIPRIFERFYRVDKSRSK 540 Query: 177 D--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + NK + L K Sbjct: 541 ENGGTGLGLAIVKHIVQNNKGTIEVTSSVGIGTTFKVTLPK 581 >gi|224370092|ref|YP_002604256.1| AtoS2 [Desulfobacterium autotrophicum HRM2] gi|223692809|gb|ACN16092.1| AtoS2 [Desulfobacterium autotrophicum HRM2] Length = 474 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 20/226 (8%) Query: 6 CFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 L L +L+ + H++ +P+ I S ++L + ++ ++Q I Sbjct: 244 QALLKQSALAERGKFSLM---VAHEVKNPLSIIKGSFQMLKKDFSLPHDNLMIQYIDDEV 300 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKI 109 ++ L + + L + + I V K + Sbjct: 301 ERLNRLIEDFLLFARPCEPMLRQVDLNLMMKDIVARFEVQLISSPVEIKSCIKDEPWYSM 360 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + N+ A + RGG V + V ++ + G+ E +I D Sbjct: 361 ADMDLLIRGVSNIVKNACEANQRGGVVGVHVVCDADQWAVEICDQGDGV-ESENLERIFD 419 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + + + V + L + Sbjct: 420 PFFTTRASGTGLGLAFARQVIGDHAGTIGVKNAKEGGAVFTITLPR 465 >gi|197118369|ref|YP_002138796.1| GAF domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087729|gb|ACH39000.1| sensor histidine kinase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 552 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----------EVM 50 K + S +VAL + + + H++ SP+ I + ++L ++ +++ Sbjct: 312 KMEAQLVQSAKMVALGVMAAGVAHELNSPMTVIIGTAQMLAREMQQEGDSEGAEALSDII 371 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R ++D + + +I+ I + I Sbjct: 372 NCGLRCKRIIQNLLTFSRQDQVPVMAIDLNAEVERVLDMIQYQINRSQIAIFEHFDRDIP 431 Query: 111 LSR----ERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLA 158 + + ++L N + A +L ++ + + S+ NG Sbjct: 432 MMNANGPQIQQVLTNFLINARDALMEVEGKEKVIEVSTVLRVEGERRFAVLSVADNGIGI 491 Query: 159 RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I S + + +A + R+ + +L Sbjct: 492 -AKENLSKIFTPFYTSKEASKGTGLGLSVSLGIAESHNGRIEVDTELGQGSCFRLILP 548 >gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 582 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 58/220 (26%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69 + + H++ +P+ +I E L + + + +I S ++ + Sbjct: 361 FVANVSHELKTPVTSIKGFAETLLDGAMKDEAALEHFLTIILKESERLQTLVEELLDLSK 420 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLN 121 + + + K + +ILLN Sbjct: 421 IEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLVIRGDRNRMKQILLN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A P G+V + ++ + E + +K G E +I + Sbjct: 481 LLANAITYTPEHGRVAVEAEEREKEVLIHVKDTGIGIEEKEIP-RIFERFYRVDKARSRD 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + V + K Sbjct: 540 SGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579 >gi|258592295|emb|CBE68604.1| putative Sensor protein [NC10 bacterium 'Dutch sediment'] Length = 480 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 67/227 (29%), Gaps = 16/227 (7%) Query: 4 NICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 ++ L S L A+ L + + H+I +P+ I E L + +Q+I Sbjct: 250 DLERQLQHSEKLAAVGRLAAGLAHEIGTPLNIISGRAEYLLPELSGGDRRSKSLQIIVGQ 309 Query: 57 SMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + I + + + RV++ + + + Sbjct: 310 IGRIRRTVEQLLGYARVHPPHIAPTSLPNILSNVVALLDHELTMGGIRVELKLSADLPSV 369 Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + ++ +NL + A ++P GG V ++ + + ++ G Sbjct: 370 AADPDLLQQVFVNLLLNALDAMPDGGDVRVAAEAHEALIEVRVEDTGCGIPPESLPRVFD 429 Query: 169 DGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + Sbjct: 430 PFFTTKKVGKGTGLGLSVVYGIVKDHGGTIEVKSEPGVGTTFLIIFP 476 >gi|259502100|ref|ZP_05745002.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041] gi|259169913|gb|EEW54408.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041] Length = 617 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 63/227 (27%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ ++H+ +E L + I + + +I+ + I + + Sbjct: 379 QFVSNVSHELRTPLTSVHSYVEALSDGAWKDQDIAPQFLTVIQNETNRMIRMINDLLSLS 438 Query: 68 ---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + E + +R + Sbjct: 439 RMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKNENNKDSKKYTIERYFTDKDLWVEIDT 498 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 499 DKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFR 558 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 559 VDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGQGSTFYISLP 605 >gi|126651383|ref|ZP_01723590.1| two-component sensor histidine kinase (phosphate regulation) [Bacillus sp. B14905] gi|126591912|gb|EAZ85995.1| two-component sensor histidine kinase (phosphate regulation) [Bacillus sp. B14905] Length = 510 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + + +++I S + ++ + Sbjct: 291 FVANVSHELRTPITSIKGFSETLLDGAYKDEKMLISFLEIIYKESNRLQMLIQDLLELSK 350 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + G D LI ++ D + +V + + + + +I+ N Sbjct: 351 IEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDRDVQVMGDANRIIQIVTN 410 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176 L A P V+I +++++ I ++ G E F + Sbjct: 411 LITNAITYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNS 470 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + R+ E ++ ++ K Sbjct: 471 GGTGLGLAIVKHLVEAHHGRIQVESEVGVGTIMIVMIPK 509 >gi|229032322|ref|ZP_04188295.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271] gi|228729102|gb|EEL80105.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271] Length = 484 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + + ++ +S G + Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNMFMQELLEEMQMDLSEEGIGVHLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNTVIMKVMDNGAGIEADT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + L+K Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478 >gi|229151308|ref|ZP_04279513.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550] gi|228632153|gb|EEK88777.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550] Length = 801 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|218233257|ref|YP_002367829.1| sporulation kinase [Bacillus cereus B4264] gi|218161214|gb|ACK61206.1| sporulation kinase [Bacillus cereus B4264] Length = 801 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|270308774|ref|YP_003330832.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154666|gb|ACZ62504.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 1379 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 21/233 (9%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + + + L A+ + + I H+I +P+ + ELL +Q Sbjct: 998 QQKLRERADMANRLAAVGEMAAGIAHEINNPLTGVVGFAELLSNRPDLPVDVQDSLKVIN 1057 Query: 58 -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109 L F R V + + + + + + Sbjct: 1058 NGSLRVVEIVKRLLTFARQTKPIVSKVSITDIIDNSLTLRSYVLETAGITIIRDYAPDLP 1117 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEK 163 ++ + A+I + + K I + + S K +G + Sbjct: 1118 WINVDPAQIQQVFLNLILNAEQSMKKAHEKGTLSIKTEKTGEYIRISFKDDGTGI-AADV 1176 Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + E+ R+ E + L Sbjct: 1177 MDKIFQPFFTTKDPGQGTGLGLSLSQGIILEHNGRIWAENNPEGGATFVIELP 1229 >gi|116873864|ref|YP_850645.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742742|emb|CAK21866.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 591 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE + +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEILLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSR 113 + VD + + I + I V + Sbjct: 423 ILALSRIEQNPVTENIELVDVDEVIEQSARTIFEMATGKNIHVSVPEKNITPVIIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPLDGKVEVKLIEHEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|22536884|ref|NP_687735.1| sensory box histidine kinase [Streptococcus agalactiae 2603V/R] gi|22533734|gb|AAM99607.1|AE014224_10 sensory box histidine kinase [Streptococcus agalactiae 2603V/R] Length = 449 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + +EV + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115 + T + I + + + + + + Sbjct: 270 IDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T++++ +K + I S+ G + F + + Sbjct: 330 TQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 ARSRKQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433 >gi|229127997|ref|ZP_04256980.1| hypothetical protein bcere0015_24430 [Bacillus cereus BDRD-Cer4] gi|228655464|gb|EEL11319.1| hypothetical protein bcere0015_24430 [Bacillus cereus BDRD-Cer4] Length = 363 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPSGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|222098143|ref|YP_002532200.1| two component system histidine kinase [Bacillus cereus Q1] gi|221242201|gb|ACM14911.1| Two component system histidine kinase [Bacillus cereus Q1] Length = 484 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESELGEGTSIFFSLEK 478 >gi|217962157|ref|YP_002340727.1| sensor histidine kinase [Bacillus cereus AH187] gi|229141405|ref|ZP_04269943.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26] gi|217065095|gb|ACJ79345.1| sensor histidine kinase [Bacillus cereus AH187] gi|228642186|gb|EEK98479.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26] Length = 484 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESELGEGTSIFFSLEK 478 >gi|160940195|ref|ZP_02087540.1| hypothetical protein CLOBOL_05084 [Clostridium bolteae ATCC BAA-613] gi|158436775|gb|EDP14542.1| hypothetical protein CLOBOL_05084 [Clostridium bolteae ATCC BAA-613] Length = 341 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCS----RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M N + ++ + +L S + H+ +P+ +I LL+ V + DE+ Sbjct: 105 MNANFNKMVKELNSMEMLQSDFIQNVSHEFKTPLTSIEGYATLLNGVSLPDELHVYSGHI 164 Query: 57 SMSAIIRLKFMRLAFGYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQVSW 104 SA + + + + + + + + Sbjct: 165 LESARQLSVLTGNILKISKLENQGIVSQKESFFLDEQIRQALLSLAPMWEPKNLDIDMDL 224 Query: 105 TGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 + ++ NLF A P GG +++ + +K G Sbjct: 225 PETLYYGNENLMFQVWTNLFSNAVKFTPPGGSISVRCCQTPEVIQVCIKDTGVGMTPEVQ 284 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G I+ + + V + + E D V + L Sbjct: 285 SHIFDKFYQGEQNRNIEGNGLGLALVKKIVTLCNGTVAVESRPDEGSVFTVRLP 338 >gi|49478723|ref|YP_038716.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206978115|ref|ZP_03238998.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|229198830|ref|ZP_04325524.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293] gi|49330279|gb|AAT60925.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|206743651|gb|EDZ55075.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|228584666|gb|EEK42790.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293] Length = 484 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESELGEGTSIFFSLEK 478 >gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 521 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLS 56 + + ++ + + I H++ +P+ +I ELL ++ + E + + Sbjct: 282 TRELEEANRELERASRYKSEFLTMISHELRTPLTSIIAFTELLLNDPRLAPEQRESLSEV 341 Query: 57 SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S+ L + Y+ D + D + I+ A + + Sbjct: 342 LESSQKLLGMITNLLDYSRLEAGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMDC 401 Query: 106 GEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + +++LLNL A P GG+V + + + E +++ G Sbjct: 402 APEVPLVHADPLRISQVLLNLLSNAVKFTPEGGRVAVECRADQREVRVTVRDTGPGVPEE 461 Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F G + + + L + R+ E H + L Sbjct: 462 EQELIFQPFRQGREKGRPEGWGLGLALSASLVRAHDGRIWVESEPGHGAAFTFTLP 517 >gi|258645967|ref|ZP_05733436.1| putative sensor histidine kinase [Dialister invisus DSM 15470] gi|260403338|gb|EEW96885.1| putative sensor histidine kinase [Dialister invisus DSM 15470] Length = 664 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 61/224 (27%), Gaps = 20/224 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRL 64 + + + + H++ +P+ +I E++ E ++ +++ S + Sbjct: 342 AERMRREFSANVSHELKTPLTSISGFAEIISSGMYQSEEDLKVFGRRILDESHRMMSLID 401 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERAKI 118 M L+ ++ ++ A K + V + + + A + Sbjct: 402 TIMHLSKVEETETTIKWKPVEVAGLVRYAAELIKPQADKKNIVVELDMKPVHVYGNAALL 461 Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNV 172 A GG VT+ + E + ++ G F + Sbjct: 462 SELAMNLLDNAVKYNHEGGHVTVKLAAENGEMVMTVSDTGIGIPVDKQNRIFERFYRAEE 521 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K L + L Sbjct: 522 SRNKFTGGSGLGLAICKHIVEKHKGSLTISSTEGEGATFIVTLP 565 >gi|238916037|ref|YP_002929554.1| hypothetical protein EUBELI_00070 [Eubacterium eligens ATCC 27750] gi|238871397|gb|ACR71107.1| Hypothetical protein EUBELI_00070 [Eubacterium eligens ATCC 27750] Length = 502 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 66/240 (27%), Gaps = 25/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++ + S L I HD+ +P+ AI +E L + + + +Q I Sbjct: 253 LKQSAEDKIKSDAEEKELIRNISHDLKTPLTAIKGYVEGLRDGIANTPEKQAKYIQTIAN 312 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------KRVQV 102 + + + + + + + Sbjct: 313 KVNDMDKLIDELTIYSRLDTNRVPYTFVRCNVSDYFGDCCEEIGTELEASQIELEYNDHL 372 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARF 160 + + +++ N+ + + G + I + D + NG Sbjct: 373 TEPAYMNVDPEQLKRVVNNIISNSVKYMAEGRQGKIKIDLYDEGDYIHAIFSDNGIGIAA 432 Query: 161 PE---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++K ++ E ++ + L K Sbjct: 433 KDVERIFERFYRTDESRNSKHGGSGIGLAIVKKIVEDHKGKIWAESVEGEGTTMHLNLLK 492 >gi|197120858|ref|YP_002132809.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170707|gb|ACG71680.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 307 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 61/225 (27%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 L +++ H++ +P+ +I +E L + + E ++++ + + Sbjct: 76 AKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQDPQRQREALEIVAEETARLSGLINR 135 Query: 67 MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + +++ + +R+ Sbjct: 136 LLDWARMESGRRVYELSRQPLGPVLDAALAAFEPQLLHHPVQLERDLPPRLPSVMADRSA 195 Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173 ++ LNL A ++ +S S ++ NG ++ Sbjct: 196 LVEAVLNLLNNAFKYTGPDKRIRLSAVASGPTVTIAVTDNGPGIPQRDQKHVFDKFYRAS 255 Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ + V + + ++ E L Sbjct: 256 DPLRRTVEGTGLGLAMVKHIVVGHGGKVSVESEPGCGATFRIALP 300 >gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 593 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 68/219 (31%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIR--------- 63 + + H++ +P+ +I E L + + ++ + +I S Sbjct: 366 FVANVSHELKTPVTSIKGFSETLLDGAMADPAYMEKFLTIIHKESERLQSLIQDLLELSK 425 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + RL +G + ++ + + + + + + E S ++ +N Sbjct: 426 LEQHYFRLNWGRAELTKIVQDAVELLRPKAEAKEIALSLHAASSVEMDGDSERLKQVAIN 485 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176 L A P G++ +SV +F++ NG E F + Sbjct: 486 LISNAITYTPNHGEINVSVTQDHQSILFTVSDNGIGIESSELPRIFERFYRVDRARSRNS 545 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + +L E H + K Sbjct: 546 GGTGLGLAIVKHLVEAHNGKLSVESELGHGTTFTIHFMK 584 >gi|229120300|ref|ZP_04249550.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201] gi|228663110|gb|EEL18700.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201] Length = 463 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLAIVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454 >gi|153955165|ref|YP_001395930.1| two component sensor kinase [Clostridium kluyveri DSM 555] gi|219855600|ref|YP_002472722.1| hypothetical protein CKR_2257 [Clostridium kluyveri NBRC 12016] gi|146348023|gb|EDK34559.1| Two component sensor kinase [Clostridium kluyveri DSM 555] gi|219569324|dbj|BAH07308.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 351 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-S 59 MAK + + S + H+I SP+ +I LL + + + + Sbjct: 121 MAKELGSL---EKMRQGFISDVSHEIQSPLTSISGFAALLRKGNLSESQISRYANIIEAE 177 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVSWTGEKI 109 + K + L ++ + K + + + +K Sbjct: 178 SKRLSKLSENLLRLSNLESENHNLNLKNYQIDKQIESILLMLEPQWSAKSITLDVSLDKT 237 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + + ++ +NL A G + + + ++NE + G + Sbjct: 238 IVCGDEDLLSQVFINLLHNAIKFTSENGNIGVKLSSNENEIECKISDTGRGISPQDQPRI 297 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + V + + ++ + L + Sbjct: 298 FERFYKADKSRDRSLGGNGLGLSIVKKIVDLHGGKISLTSEIGKGTEFTIFLPR 351 >gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] Length = 652 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 59/228 (25%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK M ++ + + H+I +P+ AI E++ E E + + + ++ Sbjct: 287 AKQRAEEADRMK--SVFLANMSHEIRTPLNAIVGFSEIIALTEDEVEKAEYLNIIQKNSN 344 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + F + + + ++ + Sbjct: 345 LLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLKMKTGIRLNVICPDEEIW 404 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L N A + G +T+ ++ + G + Sbjct: 405 IMVDRNRITQVLFNFLSNAIKNT-HEGTITLGLEVCGEWLKVYVTDTGCGIAKEKLPLIF 463 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ E L Sbjct: 464 NRFEKLNDFVQGTGLGLPICQSIVERLGGKISVESEVGVGSTFVMTLP 511 >gi|302341576|ref|YP_003806105.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638189|gb|ADK83511.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 745 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLI 53 + + + AL L I HD + + AI E+ + D+ ++LI Sbjct: 359 RRLQEQLAQARKMEALGTLAGGIAHDFNNILAAIMGYAEICQAAVADGQGQENDQRLELI 418 Query: 54 RLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ A ++ F R + ++ + + ++ + Sbjct: 419 IKAAERARDLIRQILTFSRPKGKDMRPTRLGPLIEEVLGLFRGGLPASIALKADLAAGQA 478 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLKIN 154 + + +I L + ++ + ++ S+ + Sbjct: 479 VVVCDPTQIQQLLMNLCANAMHAMEQRGGEIRVGLEVVDLSAGQDGLTPGRYARLSVSDD 538 Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ ++ D + + + + + R+ E L Sbjct: 539 GDGI-PKAIADRVFDPFFTTKAEGKGTGMGLAVAHGIVAAHNGRIGFESAPGAGATFRVL 597 Query: 213 LE 214 L Sbjct: 598 LP 599 >gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 729 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 70/237 (29%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 L S+ + S + H++ +P+ +I ELL++ + + + Sbjct: 489 SKANEELKSLDKMKDEFLSNVSHELKTPLTSIIGYTELLNDGSLGELGEEQKHAEETVMR 548 Query: 56 SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + + F + + + Q+ + ++ ++ Sbjct: 549 NTKRLQRLVDSLLYLSRTQAGTVQYDFETLNISELTDQIIEDLQIQTEEKNLEMIKKIEP 608 Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +I R++ + N+ + P+GG +TI ++K G Sbjct: 609 DLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGSITIFANKEDEYIHINIKDTGIGIPKDMI 668 Query: 164 ---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + Y + ++ + E + L Sbjct: 669 DNLFQRFYQIDSSQKRKYGGTGLGLYITKTIVEAHEGEIWVESEGKGKGTEVHIKLP 725 >gi|237654376|ref|YP_002890690.1| histidine kinase [Thauera sp. MZ1T] gi|237625623|gb|ACR02313.1| histidine kinase [Thauera sp. MZ1T] Length = 693 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56 + + S L A+ L + + H+I +P I +L+LL E V IRL Sbjct: 433 LRAAQHRLVMSEKLAAIGELTAGVAHEISNPTAVIQGNLDLLREELGPAAQPVANEIRLI 492 Query: 57 SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVS---W 104 + + VD L D + +A + V Sbjct: 493 HEQVGRIRLIVTKLLQFARPGEFAGYVEDVDVNAALADCLVLTRQHLARAEVKVVQRLAA 552 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 T +E ++L+NL + A ++P V + +++ G R Sbjct: 553 TARVQINLQELQQVLINLIVNAVQAMPAGGTLTLETVDRDPRQDARGVRITVRDTGGGIR 612 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L R+ + + L Sbjct: 613 AEDLARIFDPFFTTKKRQGTGLGLSISHTLVERYGGRIEVDSAPGRGAAFTVSL 666 >gi|220917727|ref|YP_002493031.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955581|gb|ACL65965.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 375 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 73/242 (30%), Gaps = 29/242 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +++ + L A+ + + + H+I +P+ A L +L+ E + +++ Sbjct: 133 KRDLASRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRIQKLEAERQGPLLEP 192 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQV 102 + L + + + + ++ VI + V ++ Sbjct: 193 LTLVKDEIRRLDHILEDFLQFARPREFVRKAIEVAPVITKVVDLLGGEAERRGVRLEREL 252 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153 ++L+NL + A + R + ++ + Sbjct: 253 EPVPPVAGDEERLRQVLVNLCLNALEAVDARGLVRVSCRPAPADVDHPEAPAMVDLLIDD 312 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +G P++ +I + + + V + ++ + E + L Sbjct: 313 DGPGV-VPDQRDRIFEPFFTTKARGSGLGLSIVHAIVTQHGGTIRIEDSPEGGARFVLRL 371 Query: 214 EK 215 + Sbjct: 372 PR 373 >gi|42781110|ref|NP_978357.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42737031|gb|AAS40965.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 351 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 173 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + L + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERATYRLDQQLKQIVLNSEPLWAEKEIELELNLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPNGGTITIQLKEYEKVVEVRIRDSGIGISKEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + K Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVCIPK 347 >gi|197122935|ref|YP_002134886.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172784|gb|ACG73757.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 375 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 73/242 (30%), Gaps = 29/242 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +++ + L A+ + + + H+I +P+ A L +L+ E + +++ Sbjct: 133 KRDLASRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRIQKLEAERQGPLLEP 192 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQV 102 + L + + + + ++ VI + V ++ Sbjct: 193 LTLVKDEIRRLDHILEDFLQFARPREFVRKAIEVAPVITKVVDLLGGEAERRGVRLEREL 252 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153 ++L+NL + A + R + ++ + Sbjct: 253 EPVPPVAGDEERLRQVLVNLCLNALEAVDARGLVRVSCRPAPADVDHPEAPAMVDLLIDD 312 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +G P++ +I + + + V + ++ + E + L Sbjct: 313 DGPGV-APDQRDRIFEPFFTTKARGSGLGLSIVHAIVTQHGGTIRIEDSPEGGARFVLRL 371 Query: 214 EK 215 + Sbjct: 372 PR 373 >gi|242277765|ref|YP_002989894.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120659|gb|ACS78355.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 393 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 26/240 (10%) Query: 1 MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE-------LLDEVGIEDEVM 50 M K + + + L + + H+I +P+ A+ E LD+ ++ Sbjct: 153 MEKEYQAKFYQAEKMATIGVLAAGVAHEINNPMAAVAGFAEGIQRRLTRLDDKIPDELAE 212 Query: 51 QLIRL----------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 L L F R VD D ++++ +++ Sbjct: 213 DLYDYTNTILKECLRCQDIVKTLLSFSRPVASEFIPVDINQVAEDTLRLLDHQFRRYQQM 272 Query: 101 QVSWTGEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++ S + ++LLNL A ++ GK+ I + +G Sbjct: 273 ELEVKLASPMQSILGNEAQLKQVLLNLLTNAVDAIEHNGKINIETFVENKHVGVRVSDSG 332 Query: 156 NLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + E+ ++ + + + L Sbjct: 333 CGIPEASRGMLFEPFFTTKQVGKGIGIGLSTCYNIVREHNGEIIVDSEEGKGSSFTVLFP 392 >gi|149927362|ref|ZP_01915617.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105] gi|149823854|gb|EDM83079.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105] Length = 418 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 64/238 (26%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 +AK + + + I H++ +P+ AI +LL+ + + +V + + Sbjct: 26 LAKEQAESADRAK--SEFLATISHELRTPLNAIIGFSKLLEEQLDDPELRGDVRNISSSA 83 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SW 104 + +I + + + D++ ++ ++++ + + Sbjct: 84 TSLHLILSDVLEYSRIQANGLKLDPSPFDLDAMVRQVYSLNRNLALKKNLEFSLVNETEG 143 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160 + +++ NL A G + + + +G Sbjct: 144 PCFVHGDANRLRQVVQNLVSNALKFTDIGYVKMRLMTSQPAQGRIEVFIEVVDSGIGISQ 203 Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P + + L R+ V + L Sbjct: 204 PALQKLFQRFSQASREINRQYGGTGLGLAICKGLVELMGGRIDVSSELGVGSVFTVSL 261 >gi|76666631|emb|CAJ31152.1| histidine protein kinase [uncultured sulfate-reducing bacterium] Length = 490 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 18/225 (8%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53 + + + A+ L + + H++ +P+ + SLE + + E+ + Sbjct: 255 QLSQLAHTEKMAAVGTLAAGVAHEVRNPLAGVLASLENMRANPDDREMAERYVDLIEDGL 314 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEK 108 + + L F R L + ++ I + T + Sbjct: 315 QRIEHTVRTLLDFSREQEISLEPTSINHSLRHVAELAAYKIRKAGVEVVFDLAEPGTAQV 374 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + ++ LNL + A ++P GG +T+ + + +++ G + +I Sbjct: 375 MADHFQMEQLFLNLVLNAVEAMPEGGVLTLRTRVKWGKVEVAVEDTGVGI-AEDVRDRIF 433 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 D + + + ++ + E V Sbjct: 434 DPFFTTREVGAGTGLGLAVSHSIVGAHRGTIKVESTPGRGSVFHV 478 >gi|328952067|ref|YP_004369401.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452391|gb|AEB08220.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 486 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 76/230 (33%), Gaps = 18/230 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 K + L + L AL + + + H+I +P+G I ++ ELL + +L ++ Sbjct: 254 RKELQAQLELAERLAALGEMVAGVAHEIRNPLGIISSTAELLRKRLEANPSDGRLAQIIE 313 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + + + + DIE+++E + + + + Sbjct: 314 EEVNRLNQTVTEFLDFARPREPNLQPTDIERILERGLEFLQPEIDRSQISLERHYQLNGQ 373 Query: 118 I-----------LLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + LN+F+ A ++P+ V ++ +G E Sbjct: 374 VLKADSELLYRAFLNIFINAIQAMPQGGRLIVATEPGPQNKGARIIIQDSGEGI-SSENV 432 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + ++ ++ E + + L Sbjct: 433 KKIFNPFFTTKDKGSGLGLSIVKGIVESHQGQIHIESNLNCGAKVIITLP 482 >gi|225862628|ref|YP_002748006.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|225786705|gb|ACO26922.1| sensor histidine kinase [Bacillus cereus 03BB102] Length = 456 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHIRISVIEENKHITITIEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454 >gi|169125729|gb|ACA48227.1| LipQ [Pseudomonas alcaligenes] Length = 984 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +P+ I + L E I ++++ + Sbjct: 745 EDQLVHSERLASIGRLAAGVAHEIGNPVTGIACLAQNLREEREGDEELGEISNQILDQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V Sbjct: 805 RISRIVQSLMNFAHAGQQQRAEYPVSLAEVAQDAIGLLSLNRHGTEVQFYNLCDPEHLAK 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P GG + + + + + ++ G ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGGAIRVRSEAEEQSVVLIVEDEGTGI-PQAIMDRLFE 923 Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + V + E+ ++ + D L + Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIDSPADPEHQRGTRFRVTLPR 975 >gi|168217044|ref|ZP_02642669.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239] gi|182380977|gb|EDT78456.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239] Length = 571 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 65/222 (29%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ + + I H++ +P+ +I E L + ++ + +I S L+ + Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407 Query: 69 LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118 + +++ + + + + + + + ++ Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 LLNL + +GGKV + + I ++ NG + +I + Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|156741627|ref|YP_001431756.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232955|gb|ABU57738.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 391 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 L +D L + + H++ +P+ AI LEL + ++ + + +I Sbjct: 157 SARNAELQELDRLKNTFLATLSHELRTPLTAILGYLELFERRTLGSLNDVQGQAINVIAR 216 Query: 56 SSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ + L + + L + + Q + V + T Sbjct: 217 NARTLSRILNNLLYLQEVRSTEIRRAPVVIHEVLQEVIEDMQPLARAANVTLSASLQPTA 276 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ L L A P G+V +++ D + + ++ G E + Sbjct: 277 VYMGDPIGISQALRALIDNAIKFTPPSGRVDVTLIDEPSRVLVRVEDTGIGI-PAEAQEK 335 Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + L + + +L + Sbjct: 336 IFLPFYQIDDTLARPYSGAGLGLAIARHVVEAHGGHLTVRSVVQAGSTFTVVLPR 390 >gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 923 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 28/250 (11%), Positives = 70/250 (28%), Gaps = 38/250 (15%) Query: 2 AKNICFNLSSMDL-----VALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDE 48 A+ +++ +L A S + H++ +P+ AI E+L E ++ Sbjct: 404 ARTRELQMANEELSVARVAAEEASKTKSAFLANMSHELRTPLNAIIGYSEMLQEDALDKG 463 Query: 49 VMQLIRLSSMSAIIRLKFMR--------------LAFGYTGSVDSLIGLGDIEQVIEDFI 94 + + + + VD + ++ +++ Sbjct: 464 DAEPLEDLKKIEGAGRHLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNEVMSIVQPLA 523 Query: 95 AVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 + V G + + LLNL A+ +G I +D++ +F Sbjct: 524 EKNGNALELVCPDDAGSFHSDETKVKQCLLNLMSNANKFTSKGKVTLIVERDAQASVVFR 583 Query: 151 LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + G E+ ++ + + ++ + D Sbjct: 584 VSDTGLGM-TEEQLGRLFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQISVQSAPD 642 Query: 205 HNVVLSALLE 214 + L Sbjct: 643 AGSTFTITLP 652 >gi|320352832|ref|YP_004194171.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121334|gb|ADW16880.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 602 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 77/235 (32%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLS 56 + +N + ++ + +L I HD + + I ++ LL+ + + + Sbjct: 216 LLQNELIKMQKLESIGVLAGGIAHDFNNILTGIMGNISYAQVLLEPGHPACQPLASAEQA 275 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 ++ A + + + ++ + ++ + + V+ + + Sbjct: 276 TIRAADLTRQLLTFARGGEPIKQVVSVAELIKEAMALMLRGSTVKGETRFDVGLWAIEAD 335 Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLAR 159 + +++ N+ + A ++P+GG +TI+ + + ++ G Sbjct: 336 AGQISQVFNNMIINAVQAMPQGGTLTIAADNELIAEDSPLSLPTGRYVRVTIADEGCGM- 394 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ +I D + + + + L + + + L Sbjct: 395 EPDVMGRIFDPYFSTKGTGSGLGLASAYSIVTRHAGALEVDSVVGQGTTFTLHLP 449 >gi|317057520|ref|YP_004105987.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] gi|315449789|gb|ADU23353.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] Length = 456 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 74/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + +N + L S + H+ +P+ +I +LL + E Sbjct: 215 LQRNFNKMAQELSGIETLRGDFISNVSHEFKTPLASIQGFAKLLQNPTLSMEERDEYTQI 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 + RL + +++ +G ++ D + + K D+ + Sbjct: 275 IIDETSRLSKLSSNILNLTKLENQTTIGKKKRFHIDEQIRKIILMLEPEWSKKDIDMDID 334 Query: 115 ------------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 +I N+ A P+ G++ +++ + + + NG Sbjct: 335 LEDIIYVGNEDLMGQIWQNIINNAIKFTPQEGQIKVTLFRGEMGVVTKIWDNGPQIPADK 394 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + G+ S + + + V + ++ + + VV + L Sbjct: 395 KDKIFEKFYQGDRSSATEGNGLGLALVKRIVDLADGKISVDNPFEGGVVFTVELP 449 >gi|212288555|sp|A5A2P0|WALK_STASR RecName: Full=Sensor protein kinase walK gi|145423879|gb|ABP68577.1| YycG [Staphylococcus sciuri] Length = 419 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 19/221 (8%), Positives = 61/221 (27%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ ++ + +E L+ + + + + R + I + + Sbjct: 186 FVANVSHELRTPLTSMRSYIEALEEGAWRDPEVAPTFLNVTREETDRMIRLVNDLLQLSK 245 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121 + ++ + + I E + + + + + ++ N Sbjct: 246 MDSSSDQMNSELINFNMFINKIINRHEMSQGKNVTFIRDIPVKGLFVEIDPDKMTQVFDN 305 Query: 122 LFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + A K N +K NG + F + + Sbjct: 306 VITNAIKYSQESHKRVEFHVKQNTLYNRMTIQIKDNGIGIPVNKVDKIFDRFYRVDKARA 365 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K R+ + + L Sbjct: 366 RKMGGTGLGLAITKEIVEAHKGRIWASSKEGQGTSIYITLP 406 >gi|197118249|ref|YP_002138676.1| PAS domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087609|gb|ACH38880.1| sensor histidine kinase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 649 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 70/245 (28%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + K L + + A+ L I HD + + A+ +LL ++ I+ Sbjct: 295 LKKLENQLLHAQKMEAIGTLAGGIAHDFNNIMTAVIGYTDLLMLELVPPAPYRGFLENIQ 354 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 +S AI +K + + + + Q + + +V + Sbjct: 355 NASHRAIALVKNLLAFSREEALPTAKLECNALLQNVAGLMKRLIGHEVDFVLNLSSAPQG 414 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLK 152 + + ++L+NL A ++P GG +T + S Sbjct: 415 ILVDQGQIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPYVQISFS 474 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G ++I D + + + + + S Sbjct: 475 DTGLGIDES-VKSRIFDPFYTTKEVGKGSGLGLSISYGIVKRHGGLIDVASGQGRGTTFS 533 Query: 211 ALLEK 215 LL K Sbjct: 534 VLLPK 538 >gi|91202961|emb|CAJ72600.1| similar to two component sensor histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 524 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 73/246 (29%), Gaps = 33/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------------D 41 + + S L ++ L + + H+I +P+ ++ E L + Sbjct: 268 LQHTQRRLVQSEKLASIGTLATGLAHEINNPLASVAGCAEGLNERLISILNRPGKYTEKE 327 Query: 42 EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFI 94 E+ I E +++I + + + + I + I Q + Sbjct: 328 ELEIFSEYLKIISNETYRCKSIISNLLNFSRQSEPHFERIDINSIIKNTIDSLQYHQPEN 387 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSL 151 +++QV+ + ++ + +I + + GG++ I+ + Sbjct: 388 KAKQKIQVNLSEMPCEIIGDPQQIKQVFINLITNSFHATEAGGEIIIATLQKETTVQILF 447 Query: 152 KINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEII-DDHNVV 208 + G PE +I D + I + + R+ + V Sbjct: 448 RDTGVGI-KPEYLNRIFDPFFTTKPTEKGTGIGLSICYGIVDMHNGRIDVFSEGEGRGAV 506 Query: 209 LSALLE 214 Sbjct: 507 FEITFP 512 >gi|119718537|ref|YP_925502.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119539198|gb|ABL83815.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 593 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 67/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + D+ L + + H++ +P+ AI E+L + + + Sbjct: 354 LEREHQLLDELRDIADYKGRLVATVSHELKNPLSAILGYAEILAGEPGLSDAARACVAAI 413 Query: 58 MSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSW 104 RL + + VD + ++ ++ ++ Sbjct: 414 ERGGGRLARVVDDLLLLHEPADADAMSTSQPVDLGQAVAEVVELNGPVARGRRLTLRADL 473 Query: 105 TGEKI---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + R+ ++ NL A P GG + ++V+ +E + +G Sbjct: 474 PAVPVLALADPRDVDHVVTNLVGNALKYTPEGGTIAVTVERDGDEAVLRCTDDGIGIAEE 533 Query: 162 EKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ + + + V + + R+ + L Sbjct: 534 EQAHLFEEFFRSTDPAAVAQPGTGLGLAIVRRVVERHGGRIEVDSALGRGSTFRVFLP 591 >gi|167622092|ref|YP_001672386.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167352114|gb|ABZ74727.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 712 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + + + L AL L + I H+I +P I ++ELL + +V + I L Sbjct: 452 LNETRQQLVINEKLTALGELTAGIAHEINNPTAVILGNMELLKYELGDRAVDVEEEIELV 511 Query: 57 SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104 +R Y+ + ++ ++ I + V +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIQKQEVVLNQELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ ++ G Sbjct: 572 SYPIQVNRPQLLQVLINLVVNAAHAMNGKGRIWIRTYDWVQHGEPIGVKIEVEDEGKGIP 631 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I D + D + + + + + L Sbjct: 632 EEELN-RIFDPFFTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTVGKGSLFTIGL 684 >gi|163790640|ref|ZP_02185068.1| Sensory transduction histidine kinase [Carnobacterium sp. AT7] gi|159874088|gb|EDP68164.1| Sensory transduction histidine kinase [Carnobacterium sp. AT7] Length = 464 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 17/221 (7%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMR 68 D+ L S I H+I +P+ + SLE + + I D+ +Q + + Sbjct: 241 QQDIRNQLSSDIAHEIRTPLTTLKGSLEAMIDGIWEITDDRLQSCYDEVNRITRLIGSID 300 Query: 69 LAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 D L L + + + V K + + G+ + ++ ++ ++ Sbjct: 301 KINEIESHQDSLNKTSFDLYALAENISSNFEALFVKKNIYYALNGDPLFITADKDKISQV 360 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175 + NL A P G +T+ +++ +N+ + ++ G E F + ++ Sbjct: 361 ITNLLSNAVKFTPPEGTITLKIRNEENQALLTIADTGEGIHPKEINRIFERFYMSDLSRN 420 Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + + + + +L Sbjct: 421 SFLGGQGIGLSIVKSIIKAHNGTITVKSDYGKGSTFTVILP 461 >gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 686 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56 ++I + L A S + H++ +P+ +I +L LL ++ + + Sbjct: 298 RDITERQAVERLKAEFVSVVSHELRTPLTSIRGALGLLTGGLLGPLSEKGRRMLDIAIAN 357 Query: 57 SMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTG 106 + + + + D L +++ + S + Sbjct: 358 TDRLVRLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGGVMLLCESKSA 417 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + NL A P G V +S + + G + Sbjct: 418 PLWADPDRLIQTFTNLISNAIKFSPAGSTVRVSAACDGPQVQVRVVDQGRGIPAEKLESI 477 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + ++ RL E L Sbjct: 478 FERFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGSTFVLTLP 530 >gi|324327182|gb|ADY22442.1| histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 VIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 458 >gi|309791555|ref|ZP_07686054.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226415|gb|EFO80144.1| histidine kinase [Oscillochloris trichoides DG6] Length = 523 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ A+ +LELL + + +R + I + + + Sbjct: 285 FVADVSHELRTPLAAMQGNLELLARGAANNPEIFEEVIGDMRRETARLIRMVNDLLVLAQ 344 Query: 73 YTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 L ++ V R+ + LLNL + Sbjct: 345 SESRRQIRTEPVELDTLLLEVYRELRTLAGEVTLRIGEEDQVLVQGDRDRLKQALLNLGV 404 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179 A P GG VT+ ++ + S+ G + Sbjct: 405 NAIQHTPPGGYVTMGLERREGFACLSVADTGEGIADEDLPHIFDRFFRADRSRSRHSGGA 464 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A ++ + I + L Sbjct: 465 GLGLSIVRWVAEAHRGSVTVASIPGRGSTFAIWLP 499 >gi|229070714|ref|ZP_04203944.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185] gi|228712384|gb|EEL64329.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185] Length = 448 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448 >gi|228908985|ref|ZP_04072815.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL 200] gi|228953539|ref|ZP_04115582.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229080447|ref|ZP_04212968.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2] gi|228702749|gb|EEL55214.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2] gi|228806123|gb|EEM52699.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228850707|gb|EEM95531.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL 200] Length = 448 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448 >gi|78356308|ref|YP_387757.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218713|gb|ABB38062.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 654 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 69/242 (28%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIE-------DEVMQL 52 M + + M+ + + I HD + +GAI + EL L++ + V++ Sbjct: 256 MERELRHA-QKMEAIGIFAGGIAHDFNNILGAISSCSELALEDTPEDSPVREDLYHVLKA 314 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 R F + +V + + Q+++ FI V++ + Sbjct: 315 ARRGKNLVKRIKTFSQRTELTKTTVQVRYTVQECIQLLQTFIPATVEVRLRINAPTAQVK 374 Query: 113 RERAK---ILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKIN 154 + + +L+NL A ++ + + S++ Sbjct: 375 ADPDQLLQVLMNLCTNAEQAMRGMKGLLEITLDMETLDTGHAAPLELPAGRYVVISVRDT 434 Query: 155 GNLARFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + + + + + + + R+ + Sbjct: 435 GTGMKPV-VMKHVFEPFYTTRKKSGGTGLGLSITQNIVRLHGGRITVDSAPSRGSTFRVY 493 Query: 213 LE 214 L Sbjct: 494 LP 495 >gi|18310739|ref|NP_562673.1| sensory box histidine kinase [Clostridium perfringens str. 13] gi|18145420|dbj|BAB81463.1| two-component sensor histidine kinase [Clostridium perfringens str. 13] Length = 571 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 62/222 (27%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ + + I H++ +P+ +I E L ++ ++ + +I S L+ + Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVEDDETRNKFLSIIDEESDRLARLLEDIL 407 Query: 69 LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118 + + + + + + + ++ Sbjct: 408 CLYEIEQKRSTILEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 LLNL + +GGKV + + I ++ NG + +I + Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|118581481|ref|YP_902731.1| signal transduction histidine kinase NtrB [Pelobacter propionicus DSM 2379] gi|118504191|gb|ABL00674.1| signal transduction histidine kinase, nitrogen specific, NtrB [Pelobacter propionicus DSM 2379] Length = 369 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 61/230 (26%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMS 59 + L L L + + H++ +P+G I + +LL++ +++ Sbjct: 138 QADRLSTLGTLAAGLAHEVKNPLGGIKGAAQLLEQELAAESELLEYTRVMIRETERIDRI 197 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKI 118 L+ V+ LGDI + + + + D+ +R + Sbjct: 198 IRELLELASPRGLKLAPVNLHRILGDILLLQKQAVADRQISFVTHFDPSIPDIMADREML 257 Query: 119 LLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ Q + +G + Sbjct: 258 TRLFLNLIRNAIDAIAESGQLTVTSRVLSDYRLAQNQRRSRMVAVDIADDGPGIPGADL- 316 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I S + + E++ + E H + LL Sbjct: 317 ENIWTPFFSSKSTGTGLGLTICHKIVSEHRGMIKVESDPGHGTKFTVLLP 366 >gi|320352967|ref|YP_004194306.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121469|gb|ADW17015.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 541 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRL- 55 + + L S + A+ L I HD + + AI EL L ++ ++ Sbjct: 159 QRQLEEQLRQSQKMAAIGTLAGGIAHDFNNLLAAILGYAELALLKLPPGGALQREIRQIL 218 Query: 56 -----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGE 107 +S L F R + + + ++ +++ I ++ Sbjct: 219 KAGGKASELVNQILAFSRKETTKRIPIQPGVLIKEVIKLLRGTIPSTITIRERIAATDRM 278 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT-----------ISVQDSKNENIFSLKINGN 156 + + ++++NL A ++ G ++ + S+ NG Sbjct: 279 ILANPTQLHQVVMNLCTNAFHAMEEQGGEMTLSLESVRKLLREKEEEREWIRISVADNGC 338 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + R+ + + Sbjct: 339 GIEPATL-ERIFEPYFTTKPSGKGTGMGLAVVHGIVESHGGRIEVKSTVGQGTTVQVYFP 397 >gi|229017938|ref|ZP_04174816.1| hypothetical protein bcere0030_24740 [Bacillus cereus AH1273] gi|229024160|ref|ZP_04180626.1| hypothetical protein bcere0029_24840 [Bacillus cereus AH1272] gi|228737117|gb|EEL87646.1| hypothetical protein bcere0029_24840 [Bacillus cereus AH1272] gi|228743363|gb|EEL93485.1| hypothetical protein bcere0030_24740 [Bacillus cereus AH1273] Length = 439 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 80/223 (35%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 208 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSRDEYIEHILEELN 267 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112 R ++ + I+ ++ + + ++ I + Sbjct: 268 RAQAIIDDYLTFAKPASEKLDCISVEHELHRVIKMILPLCNMNNINITQEFSEGIIIGNT 327 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 328 QHFHQCFLNLIKNSIEAMPSGGNLIISATVSNNKVIIRIEDSGIGM-SQEQINRFGEPYF 386 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + + L+ L K Sbjct: 387 STKTKGTGLGTMVAVKIIETMRGTLKIQSVINKGTTLTITLPK 429 >gi|222150272|ref|YP_002559425.1| two-component sensor histidine kinase [Macrococcus caseolyticus JCSC5402] gi|222119394|dbj|BAH16729.1| two-component sensor histidine kinase [Macrococcus caseolyticus JCSC5402] Length = 612 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 61/220 (27%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++ + +E L+ + + + + + R + I + + Sbjct: 382 FVANVSHELRTPLTSMRSYIEALEEGAWKDENLAPQFLSVTREETDRMIRLVNDLLQLSK 441 Query: 73 YTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121 +D + + I E + I + + ++ N Sbjct: 442 MDNTDDNLNKELIDFNMFIHKIINRFEMSEGKNATFIRDIPKNGIFVEIDPDKMTQVFDN 501 Query: 122 LFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174 + A KV V+ + N +K NG + Sbjct: 502 VITNALKYSKGRKKVEFHVKQNTLFNRMTIQIKDNGIGIPLNKVDKIFDRFFRVDKARTR 561 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + + L Sbjct: 562 KMGGTGLGLAISKEIIEAHNGRIWANSKEGYGTSVYITLP 601 >gi|254414468|ref|ZP_05028234.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178698|gb|EDX73696.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 421 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 62/234 (26%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + +++ +L + + S + H+ +P+ I +S ELL G + + + R Sbjct: 172 LRQSLTKEKELSELKSNIISVVSHEYRTPLATILSSSELLQHYGHKWQEDKKQRHFQRIQ 231 Query: 61 IIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + L + Q+ + Sbjct: 232 NTIHHMTQLISDVLLINKAEAGKLEFKPVPLDLEAFCQELVEELQLTVKTPHQIGFRRQG 291 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + L NL A P GG V + ++ F++K G E+ Sbjct: 292 RSRWVGLDEKLLRQFLTNLLSNAIKYSPEGGTVQFDLIFDADQVRFTIKDQGIGIPEKEQ 351 Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V ++ + + + Sbjct: 352 AQLFDAFYRSSNVGTISGTGLGLAIVKKCVERHQGEIAVDSEVGKGTTFIVTIP 405 >gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 867 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 ++ + + + + + + H+I +P+ AI E+L E +E L+ L SA Sbjct: 361 LSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILLESEKRNEQRSLLHLLHKSA 420 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 + + Y+ D + + + + Sbjct: 421 GNLITLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAYQANKKDLKLLVDMPLDI 480 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARF- 160 I +ILLNL A G +T N F + G Sbjct: 481 HAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEKRTPQGNVYCFDVIDTGIGIPEE 540 Query: 161 --PEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P + + + + L L S L+ Sbjct: 541 RLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMYGGDLSVTSTLGSGSCFSFSLK 598 >gi|42522211|ref|NP_967591.1| putative two-component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574742|emb|CAE78584.1| putative two-component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 640 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 70/230 (30%), Gaps = 18/230 (7%) Query: 2 AKNICF---NLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----L 52 ++ L S + A LL I H++ +P+ + + ++L + E + Sbjct: 407 TQSRELYLRMLQSEKMGAIGLLAGNIAHELNNPLTGLRSLSQVLLQEAEEGSNLHSDLVE 466 Query: 53 IRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 I ++ + +K + SVD ++ + + Sbjct: 467 IEKATARSQRIIKNLLDFSKGEDQPSEYISVDEVVERTLPMLKSALRTHRLEVDLQTLGS 526 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ NL A ++ G++++ + ++ G + + Sbjct: 527 TVYVEPHLLQQVVFNLINNACQAMKDPGRLSLRTSLVNGSVVLEIEDTGPGI-PEDIRRR 585 Query: 167 IVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + +D H + +L Sbjct: 586 IFEPFFTTKKEGLGTGLGLSMSKSVIEKFGGTIEFRNVDPHGTCFTIVLP 635 >gi|288937701|ref|YP_003441760.1| integral membrane sensor signal transduction histidine kinase [Klebsiella variicola At-22] gi|290513209|ref|ZP_06552570.1| two-component system, NtrC family, sensor histidine kinase HydH [Klebsiella sp. 1_1_55] gi|288892410|gb|ADC60728.1| integral membrane sensor signal transduction histidine kinase [Klebsiella variicola At-22] gi|289774306|gb|EFD82313.1| two-component system, NtrC family, sensor histidine kinase HydH [Klebsiella sp. 1_1_55] Length = 464 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIR 54 ++ L + LVAL L + + H+I +P+ +I + + E QL + Sbjct: 223 RRSRQQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPPGGEAQQLAQ 282 Query: 55 LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 + + A + + R A VD + Q++ + Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQPVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 + ++LLNL++ A ++ R G + +S ++ + + +G E Sbjct: 343 ELTTINADADRLNQVLLNLYLNAMQAIGRDGVIHVSASEADRQRVKIVVTDSGKGMSDEE 402 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + V + ++ + E + + L Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453 >gi|228986322|ref|ZP_04146459.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773349|gb|EEM21778.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 448 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDAIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448 >gi|229151412|ref|ZP_04279615.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550] gi|228631955|gb|EEK88581.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550] Length = 448 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + G + V++ + I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEE-MER 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 591 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +PI +I E L + +E ++ + +I S ++ + Sbjct: 365 FVANVSHELKTPITSIKGFSETLLDGAMEDKQALNDFLSIILKESDRLQSLIQDLLDLSK 424 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILL 120 + D L + I + + + Q ++ + Sbjct: 425 IEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIVFKYQRDEKPVYIEGDIHRLKQVFI 484 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 N+ A + P G + IS + + + ++ G E +I + Sbjct: 485 NIISNAISYTPNQGVIYISAAKTGSTVLTEIRDTGIGIEASEIP-RIFERFYRVDKARSR 543 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L +K + + L K Sbjct: 544 NSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFIIELPK 584 >gi|228927701|ref|ZP_04090750.1| hypothetical protein bthur0010_24070 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229125037|ref|ZP_04254202.1| hypothetical protein bcere0016_53080 [Bacillus cereus 95/8201] gi|228658413|gb|EEL14088.1| hypothetical protein bcere0016_53080 [Bacillus cereus 95/8201] gi|228831951|gb|EEM77539.1| hypothetical protein bthur0010_24070 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 413 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404 >gi|219848910|ref|YP_002463343.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543169|gb|ACL24907.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1016 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + + + L AL L S + HD + + +I ++LL + + + +R Sbjct: 637 LQRAREQLIERDRLRALGELSSGVAHDFNNLLASILGHVQLLLNEYHDPRLQEGLRAIEL 696 Query: 58 ------MSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIA---------VDKRVQ 101 + F + + +VD + + + ++ R Sbjct: 697 AAIDGAATIKRLQGFAQTSQSTPQGAVDLNQVVEESLALTRPRWRDEAQSRGIVIEVRTD 756 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI------FSLKING 155 + + ++++NL + A +LP GG +TI + E ++ NG Sbjct: 757 LEPLPIITGDAPALRELIINLVLNAIDALPNGGTITIRTTPAPPEVFGAAGVLLVIQDNG 816 Query: 156 NLARFPEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P +I + + + V + ++ R+ E + L Sbjct: 817 VGI-DPALHERIFAPFFSTKGVRGTGMGLAIVRGIVQQHGGRITLESEPGKGTMFQIWLP 875 >gi|254412814|ref|ZP_05026587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180549|gb|EDX75540.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 409 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 24/238 (10%) Query: 1 MAKNICFNL-SSMDLV---ALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50 + + L +L + + S + H+ +P+ I++S E+L+ + + + Sbjct: 169 LESQLRLALAQEQELSHFKSRIISTVSHEYRTPLTTINSSAEILERYLHKLDAEKQRKHF 228 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Q I+LS ++ + + I ++ V + Sbjct: 229 QRIQLSVKHLTALVEDVLFINKAELEKVEFNPEPIYLVSFFEEIVEGLQITVDEKHQLFF 288 Query: 111 LSRERA-----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 +++ NL A P+GGK+T+++ +N+ +F ++ G Sbjct: 289 THHGSCECANLDPKLLRQMITNLLSNAIKYSPQGGKITLNLSCEENQVVFQVQDKGIGIP 348 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F TI + V + + + + L Sbjct: 349 QADQAKLFESFSRAGNVGTIAGTGLGLSIVKKCVDLHGGEITVKSEVGFGTTFTVTLP 406 >gi|218903777|ref|YP_002451611.1| sporulation kinase B [Bacillus cereus AH820] gi|301054180|ref|YP_003792391.1| sporulation kinase B [Bacillus anthracis CI] gi|218538315|gb|ACK90713.1| sporulation kinase B [Bacillus cereus AH820] gi|300376349|gb|ADK05253.1| sporulation kinase B [Bacillus cereus biovar anthracis str. CI] Length = 422 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413 >gi|159897348|ref|YP_001543595.1| signal transduction histidine kinase, nitrogen specific, NtrB [Herpetosiphon aurantiacus ATCC 23779] gi|159890387|gb|ABX03467.1| signal transduction histidine kinase, nitrogen specific, NtrB [Herpetosiphon aurantiacus ATCC 23779] Length = 393 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 69/224 (30%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIR 54 L L A+ L + I H+I +P+ A N+L L + E + + Sbjct: 167 EAALLQGARLAAVGQLSASIAHEINNPLYAARNALLLLEEDLPEEVRESTVMQLARDQLT 226 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110 + F R G D + + + + + + Sbjct: 227 RIAGIIERMRDFYRPMRGEMAPTDLNAVIEETLALAGLHARHNNTMITFTPDIHLPAVVC 286 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++ LNL + A ++ GG +T++ + + + + G + + + Sbjct: 287 NADQLRQVFLNLVLNALDAMTNGGTLTVTTEAATSFVTIEICDTGTGI-PDDIRAHLFEP 345 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ ++ + +L Sbjct: 346 FFTNKPNGTGLGLPISAHIVTQHGGQIEVDSTVGVGSTFRVVLP 389 >gi|78045212|ref|YP_360676.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77997327|gb|ABB16226.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 602 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54 + + + + AL L + + H+I +P+ + E L E E++V +L R Sbjct: 353 KQKSAELIQTEKMAALGLLAAGVAHEINNPLATVSAYAEDLLERIAEEDVRELHRSGELA 412 Query: 55 -----------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQV 102 L F R G+ ++ L D + + +V+ Sbjct: 413 RYLQVIGKQIERCKKITGSLLNFARQPAGHMIDINLNELLEDTLALVNHRIKQLGIQVEK 472 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLA 158 + + + + +++ L + +L + + + + + G Sbjct: 473 EFNVDLPVVKGDLSQLQQVLLNIIGNALDAMETTGGRLKLVTEKREKDLVIKIIDTGTGI 532 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + + E K + ++ +L Sbjct: 533 AQEELK-RVFDPFYTTKPLGKGTGLGLSICYGIVKEMKGDIQISSSLGKGTTVTIILP 589 >gi|325571476|ref|ZP_08146976.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC 12755] gi|325155952|gb|EGC68148.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC 12755] Length = 613 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 70/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E +D + L R Sbjct: 383 FVSNVSHELRTPLTSMRSYIEALSEGAWKDPEIAPNFLKVTLDETDRMIRMINDLLSLSR 442 Query: 69 LAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 + G + I ++ ++ + ++ +T ++ + + ++ Sbjct: 443 MDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQV 502 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T+ + ++ N + S+ G + F + + Sbjct: 503 IDNIMNNAIKYSPDGGIITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARA 562 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E ++ +L Sbjct: 563 RQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603 >gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 443 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---------RLSSMSAIIRLKFMR 68 + I H++ +PI ++ E L E + D+ + + R Sbjct: 226 FVANISHELRTPIASLKLLAETLKEGAMADQEVAADFLNRISVEADKMGQLVDELGELSR 285 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGEKIDLSRERAKILL 120 + G + G + + + V + ++L+ Sbjct: 286 IESGAAPLDKRPMDAGAVMTTVVGRLQNQADRAKLTLEVATVDGLPAVRADAGRIEQVLM 345 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177 NL A P GG++T++ S+ + G + F + + + Sbjct: 346 NLTHNAIKFTPAGGRITLTAGISEKGIEIKVTDTGAGITADDLPRIFERFYKADKARSGG 405 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + H + + E +S L K Sbjct: 406 GTGLGLAIAKHIVHAHGGEIRAESSPGQGTTISFTLPK 443 >gi|229152870|ref|ZP_04281053.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550] gi|228630690|gb|EEK87336.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K + S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|168704272|ref|ZP_02736549.1| multi-sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 253 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 21/231 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMS 59 L + L ++ L S I H+ + + I NS +L + + I + Sbjct: 17 RQQLLQAQRLSSVGELASSIAHEFNNILTTIINSAKLGSRSPDVAEKQIAFERIVKAGQR 76 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTGEKIDLS 112 A M +G+ + + + + + + Sbjct: 77 AAAIAGGMLGFARKSGTHRQNCDVARLVEEVLILTEKDLSKNRVHVETKFHARPVAWVVP 136 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIVDG 170 + +IL+NL + A ++P GG++ I V+D + + G + I + Sbjct: 137 GQIEQILVNLVLNARQAMPNGGRLKIEVRDSLDADTVEIKVADTGVGIAPDQLRL-IFEP 195 Query: 171 NVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ R+ E + + L K Sbjct: 196 FFTTKQPDEYGRGGTGLGLSVCRQIIEQHHGRIRVESVAGKGSTFTVKLPK 246 >gi|218231212|ref|YP_002369468.1| sensor histidine kinase [Bacillus cereus B4264] gi|218159169|gb|ACK59161.1| sensor histidine kinase [Bacillus cereus B4264] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K + S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|167628799|ref|YP_001679298.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591539|gb|ABZ83287.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] Length = 466 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 20/229 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + +L + + + H++ +P+GAI L+L+ +E + + + + Sbjct: 234 EAQAREQARMASLGQVATWVAHEVRNPLGAIKGLLQLIQETIEERDPDGQSRRYCETAVR 293 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGE--- 107 + +F+ Y+ I + ++++ D + Sbjct: 294 ESERLERFVGDLLAYSRLPQPTITEWPLANLVQEITALLEPELARQDAAIVTQIEPPGLI 353 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165 + ++LLNL A A++P GG + + ++ ++ G + Sbjct: 354 VRADREQMHRLLLNLIQNALAAMPSGGDIHLRALSSPTEEGLSIIVEDEGIGLPPGAEH- 412 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + +A+ + + E L Sbjct: 413 RLFEPFFTTREKGSGLGLAICRDIANRHGGTIRAEGAPGGGARFIVNLP 461 >gi|320355087|ref|YP_004196426.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123589|gb|ADW19135.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 777 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 70/235 (29%), Gaps = 31/235 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMS 59 S + A+ L + HD + + AI EL D ++ + + Sbjct: 391 QSQKMQAIGTLAGGVAHDFNNILTAILGYAELSQGQCPSDSLLYKNLGEIVKASERAGQL 450 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAK 117 L+F R S+ + + ++ +++ + + + + + Sbjct: 451 VDQILQFSRQGEKNVSSLQLGLIVKEVLKLLRASLPANIELISDIAPNAYVKADPTQMHQ 510 Query: 118 ILLNLFMVAHASLPRGGKVTISVQD----------------SKNENIFSLKINGNLARFP 161 +++NL A+ +L G + ++ G P Sbjct: 511 VIMNLCTNAYQALEGKGGAIHVRLYTRTLSPKEGVEIGNLQHGSYVCLQVEDTGVGI-PP 569 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + V + ++++ + E I + L Sbjct: 570 EYLQRIFEPYFTTKKLHEGTGLGLSVVHGIVNDHRGAVTVESIPGKGSCFTVFLP 624 >gi|320353312|ref|YP_004194651.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121814|gb|ADW17360.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 982 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 74/231 (32%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + + L + L A+ L + I H+ +P+ I + L+ L + + E+++ Sbjct: 741 LEETQKKFLHAEKLSAIGKLSASIAHEFNNPLQGILSVLKGLKKRAILEAEDRELLEAAI 800 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTG 106 S ++ ++ + +L+ + + D R Sbjct: 801 AESDRIKELIRGLQDFNRPSSGRKTLMDVHRSLNSLLLLHKSDFKEKRIVLQRNFADNLP 860 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + + + ++LLNL A + G +TI+ + +++ G+ E Sbjct: 861 QIMAVPDQIKQVLLNLLTNAADACHHPGGMITITTWHDDQQVAIAIQDTGSGIGPEEL-E 919 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I S + + + + +L + + L Sbjct: 920 LIFQPFYTSKPEVKGTGLGLSVSYGIVKHHGGEILVDSAPGVGSTFTVRLP 970 >gi|229110656|ref|ZP_04240220.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15] gi|228672724|gb|EEL28004.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15] Length = 448 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 448 >gi|229128512|ref|ZP_04257490.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4] gi|228654705|gb|EEL10565.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4] Length = 448 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 448 >gi|108758345|ref|YP_628621.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108462225|gb|ABF87410.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 869 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQ 51 A+++ L S I HD+ +P+ I + LL E + + + + Sbjct: 607 AQDVTTRHELDRLREEYVSLISHDLRNPLHTISLRVGLLRRALREQNLEREESMTEAIQR 666 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEK 108 + + L+ RL L + V +R + G Sbjct: 667 SVAWMNTMIEDLLEGSRLESQRETLRREPRDLARFLEEVMERDVAPDVRERFHLEVPGAL 726 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + A++ + A P G +T+ Q + + S+K G + Sbjct: 727 PPIWMDAARLERVMANLLSNAAKYSPGGQPITVRAQLQPEQVVVSVKDLGPGLSPEDAAR 786 Query: 166 QIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y L+ + R+ E S L Sbjct: 787 VFDKYFRTQKSGASDAKGLGLGLYISRLIIEAHGGRIWVESEPGQGSTFSFSLP 840 >gi|30021337|ref|NP_832968.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|29896891|gb|AAP10169.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] Length = 458 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 458 >gi|331700441|ref|YP_004397400.1| multi-sensor signal transduction histidine kinase [Lactobacillus buchneri NRRL B-30929] gi|329127784|gb|AEB72337.1| multi-sensor signal transduction histidine kinase [Lactobacillus buchneri NRRL B-30929] Length = 617 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 61/225 (27%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIR---- 63 S + H++ +P+ ++ + +E L + +D + Sbjct: 380 QFVSNVSHELRTPLTSVRSYIEALSDGAWKDPKLAPKFLKVTQDETDRMIRMINDLLTLS 439 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116 V+ + + + + + ++T ++ R+ Sbjct: 440 RMDSGTQKMEVELVNINELFNYVLNRFDMILKKEDHPEKTYTIKRYFTKRDLWVDLDTDR 499 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L NL A P GG +T + +++N+ I S+ G + Sbjct: 500 FTQVLDNLMNNAIKYSPDGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVD 559 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ E ++ L Sbjct: 560 KARSRQQGGSGLGLAISKETVEALHGQIWAESVEGKGSTFYIALP 604 >gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium extorquens AM1] gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium extorquens AM1] Length = 679 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 69/242 (28%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDL---VALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 +++ L A L + + H++ +P+ AI +LL E ++ + ++ R Sbjct: 165 RSLLVKLQKAKADAEAASLAKSRFMASVSHELRTPLNAIIGMSDLLGETRLDADQTEMNR 224 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRV 100 S + L + ++ D++ + + + Sbjct: 225 TVSTAGRALLAHINTILDFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGLAFQT 284 Query: 101 QVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 +V + R ++L+NL A G + + F ++ G Sbjct: 285 EVDDDLPQGVCGGRRHLEEVLVNLAANAVKFTADGTVSVHVRRADGDMVRFEVRDTGIGI 344 Query: 159 RFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 PE +I + + + + L + + + Sbjct: 345 -APEARGRIFEAFSQADETILDSFGGTGLGLAICRQLVTLHGGEIGVDSEIGVGSTFWFE 403 Query: 213 LE 214 L Sbjct: 404 LP 405 >gi|145593965|ref|YP_001158262.1| ATPase domain-containing protein [Salinispora tropica CNB-440] gi|145303302|gb|ABP53884.1| ATP-binding region, ATPase domain protein domain protein [Salinispora tropica CNB-440] Length = 470 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 17/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59 + + S L + H++ +P+ A+H +L L++ + + + + Sbjct: 236 LNEAFDQRERSEALTRTFVADASHELRTPLSAVHGWADLYLNDGITDWDGVDEAMRRIRT 295 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGE 107 R+ + +D+ L E + + V Sbjct: 296 ETTRMGTLVEQLLTLARLDAHQPLARDEVDLGRVCADVLDSLRVTAAHHRLALAVDEPVT 355 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164 ++ NL A P G + + V + + + G F Sbjct: 356 VTGDETSLHQVAQNLVGNAVRHTPPGTAIEVRVHHGDEDVVLVVHDEGPGLDAQGLAHAF 415 Query: 165 TQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + + + + + ++ L + Sbjct: 416 DRFWRADPGRAAPGGTGLGLAIVRDIVEAHGGTVALDSAPGQGLTVTVRLPR 467 >gi|315180156|gb|ADT87070.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 579 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 61/246 (24%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + + L + + H++ +P+ A+ ++LL + + Sbjct: 185 LQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDDSDAYQQ 244 Query: 50 MQLIRLSSMSAIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + ++ ++ + + I Sbjct: 245 DMLEQMENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDI 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + + E S +IL N+ A G V +K + Sbjct: 305 TFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTHHGFVDVSLVTARDR-LEIEVKDS 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G E+ + + + L + + Sbjct: 364 GIGI-DNERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSL 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTISIP 428 >gi|301311913|ref|ZP_07217835.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300830015|gb|EFK60663.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 491 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 51/227 (22%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ +L L + + + H+I +P+ AI ++L + Q I + + Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316 Query: 62 IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 + + D + + + V++ Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISENVRLILDDSPNVSL 376 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + IL L A +G F + GN + Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436 Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + S L Sbjct: 437 RFLQLNEFEPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56 ++I + S + H++ +P+ +IH SL +L + ++ + S Sbjct: 933 QDITDRKQIERMKDEFISIVSHELRTPLTSIHGSLGMLASGLLKADSEEGKRMLYIAVDS 992 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106 + + + + +G V ++E +I + + V + + S + Sbjct: 993 TDRLVRLINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQALANKVEVTLSVSSLSI 1052 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + L+NL A G V ++VQ +F +K G + Sbjct: 1053 SLWADPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDRHLLFIVKDEGRGIPTEKLESI 1112 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + ++ + E + + ++ Sbjct: 1113 FERFQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVESVLGEGSIFYFMIP 1165 >gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 812 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + S L + + I H+I +P+ AI +LL D+ ++E + I+ ++ Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + V + Q + + + +Q+ Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 S +++ N A RG D++ + ++ G E Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + +S + + + + + L Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804 >gi|229194198|ref|ZP_04321054.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876] gi|228589289|gb|EEK47252.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|254828075|ref|ZP_05232762.1| two-component sensor histidine kinase [Listeria monocytogenes FSL N3-165] gi|258600459|gb|EEW13784.1| two-component sensor histidine kinase [Listeria monocytogenes FSL N3-165] Length = 591 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65 ++ + + + H++ +P+ A+ E L + + DE++ + S + + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113 + L+ V + L ++++VIE + + Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEAIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589 >gi|229190738|ref|ZP_04317733.1| hypothetical protein bcere0002_24050 [Bacillus cereus ATCC 10876] gi|228592763|gb|EEK50587.1| hypothetical protein bcere0002_24050 [Bacillus cereus ATCC 10876] Length = 360 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 74/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG ++IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLSISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354 >gi|110801444|ref|YP_699043.1| sensory box histidine kinase [Clostridium perfringens SM101] gi|110681945|gb|ABG85315.1| sensory box histidine kinase [Clostridium perfringens SM101] Length = 571 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 64/222 (28%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ + + I H++ +P+ +I E L + ++ + +I S L+ + Sbjct: 348 ENMRSQFVADISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407 Query: 69 LAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + + V+ + + + ++ Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTHSNCVLMGDKDKFKQM 467 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 LLNL + +GGKV + + I ++ NG + +I + Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] Length = 589 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 23/227 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL 64 + L S + H++ +P+ ++ LELL + + + +I ++ + + Sbjct: 356 EAARLKDEFVSLVSHELRTPLTSVLGYLELLLDGTDELTEEQRSYLTVIERNARRQLRLV 415 Query: 65 KFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRE 114 + +D + + V+ + Sbjct: 416 GDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGVALVTSVAPTPVVADPGR 475 Query: 115 RAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 A+++ NL A P GG+V ++ G E ++ Sbjct: 476 LAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVLVRDTGIGIAPDEL-QRLTTRFFR 534 Query: 174 ------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + RL E L Sbjct: 535 ATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEGTTFVVTLP 581 >gi|320353492|ref|YP_004194831.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121994|gb|ADW17540.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 525 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 14/218 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------- 59 + L AL L + I H+I +P+ + N + + + +V + Sbjct: 291 RAEKLAALGQLTAGIAHEINNPLAGMLNCVSAMQKEPENLDVQKRYLPLLHKGLKRIELT 350 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L + R+ VD + D + + + + + + + +I Sbjct: 351 MRQLLNYGRVDPLQVHQVDIDTVILDCLELLGHRLRNIVVNLDLHFNALCCIDTEAIKQI 410 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-- 176 ++N+ + A ++P GG + ++ ++ + ++ G E +I D + Sbjct: 411 VMNIALNAIQAMPDGGSLLLATREETGSVVLIIEDTGIGI-AREIQDRIFDPFFTTKEVG 469 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 470 EGTGLGLAVTLAMVQRLNGQIEVRSEPGSGSTFAVTLP 507 >gi|218128651|ref|ZP_03457455.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697] gi|217989106|gb|EEC55421.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697] Length = 527 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 62/234 (26%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + LS + A + + H+I +P+ +I +L+ E + + + R+ Sbjct: 292 MMEQLRDALSKAEQADTLKAQFIANMSHEIRTPLNSIIGFSQLMAEAENQTDRDEYNRII 351 Query: 57 SMSAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106 S++ + M + + D +++ +V + Sbjct: 352 SLNNNLLLNLFEDVLNLSMLDSDNMSFKNDEFDFSAMFDELAVLMREKVSNPEVEFICEN 411 Query: 107 -----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +++ NL A + G + + + ++ G Sbjct: 412 PLQTLMVKTDRERLTQVIGNLITNAAKFTGQ-GYIKMGYARKNDGVQIYVEDTGLGIEEK 470 Query: 162 EKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ + E L Sbjct: 471 NLVEVFDRFKKLNVFIQGTGLGLPICKSIVNQMGGEIWVESEYGKGSTFYVWLP 524 >gi|307154213|ref|YP_003889597.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306984441|gb|ADN16322.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 681 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 62/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51 ++I L L + H+ +P+ I +S EL++ + + +Q Sbjct: 418 EQDIRHALEKEKQLNELKTRFVTMTSHEFRTPLAIILSSAELIEHYAHKLDEKKKMTHLQ 477 Query: 52 LIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 I+ + L + + + ++ + V + Sbjct: 478 RIQTAVKHMTGLLNDVLVLGKAEAGKIEFMPTPISLAQFCRQLVEEVQLTTSTHTIVFCA 537 Query: 104 WTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ IL NL A P V + + IF ++ G Sbjct: 538 HNQCPNGCLDQQLLRHILTNLLTNAIKYSPESSLVQFDLICESQKVIFRIQDQGIGIPAN 597 Query: 162 EKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ S + + V + ++ E + L Sbjct: 598 EQPELFNSFFRASNVGSISGTGLGLSIVKKAVDLHGGQIEVESRLGEGTTFTVKLP 653 >gi|70732582|ref|YP_262345.1| sensory box histidine kinase [Pseudomonas fluorescens Pf-5] gi|68346881|gb|AAY94487.1| sensory box histidine kinase [Pseudomonas fluorescens Pf-5] Length = 984 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 25/239 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E I + Sbjct: 738 LTETQTLEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELTEISE 797 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++++ + S + F + + + V Sbjct: 798 QILEQTKRISRIVQSLMSFAHAGSHQHNDEAVCLAEVAQDAIGLLALNRRNFEVQFFNLC 857 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + A++L+NL A + P G V + + ++ ++ G+ Sbjct: 858 DPDHWVDGDPQRLAQVLINLLSNARDASPPGSAVRVKSEAFEHTVDLIVEDEGSGIPKN- 916 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 917 IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPQSQRGTRIRVTLPR 975 >gi|15613099|ref|NP_241402.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10173149|dbj|BAB04255.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 502 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 K + S L A+ + + + H++ SP+ AI + +L+ ++ I+ Sbjct: 261 RKMEVQLIHSGKLAAIGEMAAGVAHELNSPLTAILGNSQLILRDVKGHDPLFPLLTDIKN 320 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 + + V + D + + ++ + Sbjct: 321 CGNRCKRIINSLLTFSRQEEFVFEACAINDAVNETLNLLKYQLQKEEVVIKTDLQEDIPL 380 Query: 111 LSRERAKILLNLFMVA-------HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +A+I + + +L +V I NE S+ NG E+ Sbjct: 381 IEGNQAQIEQIIINLLLNAKDALEEALSDKKEVLIKTWFQYNEVHLSVTDNGIGI-EEER 439 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + I +A + + L Sbjct: 440 LAEIFHPFHTTKSSKEGTGLGLSVSIGIAKSHGGTIDVHSKHKKGSTFILRLP 492 >gi|319893720|ref|YP_004150595.1| Two-component sensor kinase SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|317163416|gb|ADV06959.1| Two-component sensor kinase SA14-24 [Staphylococcus pseudintermedius HKU10-03] Length = 610 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 62/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+E + + + R + I + + Sbjct: 380 FVANVSHELRTPLTSMNSYIEALEEGAWRDESIAPQFLSVTREETERMIRLVNDLLHLSK 439 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 +++ + + I + T D+ RE ++ N+ Sbjct: 440 MDNETETITKEIVDFNMFINKIINRHEMAAKDTTFVRDIPRETIFTEVDPDKMTQVFDNV 499 Query: 123 FMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 A +V V+ + +K NG + Sbjct: 500 ITNAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRK 559 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 560 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 598 >gi|256828151|ref|YP_003156879.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577327|gb|ACU88463.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 612 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 24/232 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSA 60 + + ++ + H++ +P+ ++ S++LL E + + +L+ + Sbjct: 375 TRLKQVEQLKSDFVMAA--SHELRTPLTSLGMSVDLLLEHASHNLAEKDRELLLAAHEEV 432 Query: 61 IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108 V ++ V + + + + VS Sbjct: 433 HRMKSLVSDLLDLSKIEAGRIEMEFEDVPVATFFEHMQSVFKSQMELKEVAFVSGIQGDL 492 Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + A +L NL A + RGG V + Q S+K +G E Sbjct: 493 PLVRADANKIAWVLSNLVSNALRYVNRGGCVALMAQQFGAHVHLSVKDDGLGI-PEEYQA 551 Query: 166 QIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V+ + + + + E + + L Sbjct: 552 RIFHKFVQVKGQEAGGSGLGLAICKEIVRAHGGTIWVESVPGRGSTFTFTLP 603 >gi|219854731|ref|YP_002471853.1| hypothetical protein CKR_1388 [Clostridium kluyveri NBRC 12016] gi|219568455|dbj|BAH06439.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 470 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 18/229 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 N+ L + + L L + + H++ +P+ + + +E + + + + M Sbjct: 240 NLAETLQNQENLRKRLTADVSHELRTPLTTLQSHMEAILDGIWEPTQDRINSCHGEIMRI 299 Query: 61 IIRLKFMRLAFGYTGSVDSLI-------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + Y G L + + + V K + + I + Sbjct: 300 NRMVNDLEKLAEYEGENLILNKSEFNISEVVKNIMLNFENEYVSKEIDFIFNSRDIFICA 359 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 ++ +I++NL A +GGKV I V + ++ NG + F + Sbjct: 360 DKDKISQIIINLISNALKYTRQGGKVLIQVDNKNEYLELIVQDNGQGIPKEDLPYIFERF 419 Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I L +K ++ E + + Sbjct: 420 YRADKSRNRLTGGAGIGLTITKSLVEAHKGKITVESELNKGTTFKVSIP 468 >gi|153954119|ref|YP_001394884.1| sensory transduction histidine kinase [Clostridium kluyveri DSM 555] gi|146347000|gb|EDK33536.1| Predicted sensory transduction histidine kinase [Clostridium kluyveri DSM 555] Length = 461 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 18/229 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 N+ L + + L L + + H++ +P+ + + +E + + + + M Sbjct: 231 NLAETLQNQENLRKRLTADVSHELRTPLTTLQSHMEAILDGIWEPTQDRINSCHGEIMRI 290 Query: 61 IIRLKFMRLAFGYTGSVDSLI-------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + Y G L + + + V K + + I + Sbjct: 291 NRMVNDLEKLAEYEGENLILNKSEFNISEVVKNIMLNFENEYVSKEIDFIFNSRDIFICA 350 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 ++ +I++NL A +GGKV I V + ++ NG + F + Sbjct: 351 DKDKISQIIINLISNALKYTRQGGKVLIQVDNKNEYLELIVQDNGQGIPKEDLPYIFERF 410 Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I L +K ++ E + + Sbjct: 411 YRADKSRNRLTGGAGIGLTITKSLVEAHKGKITVESELNKGTTFKVSIP 459 >gi|110801347|ref|YP_696443.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] gi|168207284|ref|ZP_02633289.1| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] gi|168210610|ref|ZP_02636235.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|182625884|ref|ZP_02953650.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] gi|110675994|gb|ABG84981.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] gi|170661350|gb|EDT14033.1| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] gi|170711264|gb|EDT23446.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|177908918|gb|EDT71410.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] Length = 571 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/222 (9%), Positives = 65/222 (29%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ + + I H++ +P+ +I E L + ++ + +I S L+ + Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407 Query: 69 LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118 + +++ + + + + + + + ++ Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 LLNL + +GGKV + + + ++ NG + +I + Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLVLVIEDNGIGISAEDLP-RIFERFYRVDKAR 526 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568 >gi|134300114|ref|YP_001113610.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052814|gb|ABO50785.1| GAF sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 557 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 K + S LVA+ + + + H++ SP+ I + +++ E + I Sbjct: 316 KMEAQLMHSAKLVAIGEMAAGVAHELNSPMTVIIGTAQMMQRDMGPEDPRSEWLDDIIGC 375 Query: 57 SMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEK 108 M L F R D + + +I I + + Sbjct: 376 GMRCKKIIQNLLSFSRQGQFALNETDINQQVEKVLSLIHYQINRNNINIIKNLDLNVPYI 435 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-------QDSKNENIFSLKINGNLARFP 161 + + ++L+NL + A +L + +++ NG P Sbjct: 436 MANGHQIQQVLINLLLNARDALEEIEGEKSIWISTTVESDQETQWVVLTVRDNGCGIH-P 494 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + S + + +A + + E +L Sbjct: 495 EGLNKIFNPFYTSKEASKGTGLGLSVSLGIAQSHGGTIKVESQQGFGSSFHFMLP 549 >gi|134299752|ref|YP_001113248.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052452|gb|ABO50423.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 493 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 59/218 (27%), Gaps = 20/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF- 71 + + H++ +P+ I + E L ++ + + + I S+ + Sbjct: 266 FVAGVSHELRTPLTIIQGNAEALLDGVIEDKDKQRDFLINIYEESLRLKRLSNELLDMRK 325 Query: 72 --------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 S I + ++ + +S + + L + ++ L Sbjct: 326 IETGQVNLYKEKVNASEIFFNVVSRMQHLAKQRGIILNLSVPEQPVILYLDTDRLGQVLI 385 Query: 124 MVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTID 177 + +L +D ++ + NG E + + + + Sbjct: 386 NLIDNALRFSRSEVTIELKDFPDKIKVQISDNGPGIPEAERNLVWDKFYKVDKSRSRSAG 445 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + K Sbjct: 446 GTGLGLSIVKQLIELHGGTVCLTSREGEGTTFIFTIPK 483 >gi|222056472|ref|YP_002538834.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221565761|gb|ACM21733.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 427 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 66/228 (28%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55 K L + + +R+ H++ +P+ I S ++L + E+M I + Sbjct: 198 EKVRKEMRQKDRLATMGEVVARVAHEMRNPLFGITASSQILAMELPLTAEQKELMNSILV 257 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + E +I + + Sbjct: 258 EGRRMNRLVDELLDCSKEMKLKKVPFDMVKAVRDSISFNEPLIMEKRLFLHKSFAEGEVT 317 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L+NL A ++ GG +TI ++ + + + +G +I Sbjct: 318 VTADQERIRQVLVNLLKNAVDAVSEGGSITIEMEGKDGKVLIRILDSGPGIPEKNL-EKI 376 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + + L+ V + L + Sbjct: 377 FDIFYTTKKSGTGLGLAVSRKIIEAHDGTLVAGNGPG-GAVFTITLPR 423 >gi|323463222|gb|ADX75375.1| two-component sensor histidine kinase VicS [Staphylococcus pseudintermedius ED99] Length = 610 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 62/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+E + + + R + I + + Sbjct: 380 FVANVSHELRTPLTSMNSYIEALEEGAWRDESIAPQFLSVTREETERMIRLVNDLLHLSK 439 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 +++ + + I + T D+ RE ++ N+ Sbjct: 440 MDNETETITKEIVDFNMFINKIINRHEMAAKDTTFVRDIPRETIFTEVDPDKMTQVFDNV 499 Query: 123 FMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 A +V V+ + +K NG + Sbjct: 500 ITNAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRK 559 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 560 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 598 >gi|296503742|ref|YP_003665442.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|296324794|gb|ADH07722.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 458 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDAIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 458 >gi|257093282|ref|YP_003166923.1| osmosensitive K+ channel signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045806|gb|ACV34994.1| osmosensitive K+ channel signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 897 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 18/232 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55 A+ + S L L S I HD+ +P+ + E + Q L Sbjct: 653 AQTTLVQMESESLRNSLLSAISHDLRTPLSVLVGLAESIRLTQPPPTDAQATIAATLKEE 712 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTG 106 + + + +A G V +E+V+ + Sbjct: 713 ALRMSTKVNSLLDMARLQAGKVQLKRQWQPLEEVVGSALMATDVSLAAHSVHTALPDDLP 772 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++L NL A P G V+I +NE + +G Sbjct: 773 LLEIDGVLIERVLCNLLDNAAKYTPAGTPVSIGAAARENEVEVWVDDSGPGLPRGREESI 832 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G EST + + + R+ E L + Sbjct: 833 FEKFERGARESTTSGVGLGLAICRAIVEAHGGRIHAENRPRGGARFIFSLPR 884 >gi|147677087|ref|YP_001211302.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146273184|dbj|BAF58933.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 349 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/229 (9%), Positives = 68/229 (29%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 + + + + L L + + H+I +P+ I ++LL + +++ + +I Sbjct: 120 LQELENAVIKAERLAILGQLAAGMVHEIRNPLTVIGGFMQLLQKLLDGNPKEKYIHIILA 179 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGE 107 + S + + + + + + + ++ Sbjct: 180 ELKHVNNLISEFLQLAKPGCSRRAPCSIEKLIKDVVMLVESEAYLRKLEIDLAVTGGIPP 239 Query: 108 KIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ LN + +L + + + K NG E Sbjct: 240 VMGDGEQLKQVFLNFIKNSFDALSPGGKLVLETAWDRREGFVRIVFKDNGAGM-DEETLK 298 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + R+ + ++ LL Sbjct: 299 SIFNPFFTTKENGTGLGMFINKKIIDNHGGRIEIQSEQGKGTTVTVLLP 347 >gi|119773268|ref|YP_926008.1| sensor histidine kinase [Shewanella amazonensis SB2B] gi|119765768|gb|ABL98338.1| sensor histidine kinase [Shewanella amazonensis SB2B] Length = 708 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 452 LNETRAQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRSELGDKAGQVEEEIDLV 511 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 +Q + S L++ R I E ++ ++ K +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIKKQEVVLHQELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ VQD ++ G Sbjct: 572 SCPVQINRPQLLQVLINLVVNAAHAMDGKGRIWIRTYDWVVQDEPVGVKIEIEDEGCGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + L Sbjct: 631 APEQLGRIFDPFYTTRPDGTGLGLSLSYGIIKRIGGTIEVTSTLGKGTLFTIGL 684 >gi|260768409|ref|ZP_05877343.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] gi|260616439|gb|EEX41624.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] Length = 681 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I + EL+ ++ E + I Sbjct: 435 LNQTRDKLIVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGEDANRVTEEIDAI 494 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSW 104 L + + + G D + + E ++ + Sbjct: 495 MLQIDRIRNITRSLLQYSRHGGVQDEITWQHVNPIIDESMTLVKTGSKKRDIEFVTDLQA 554 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 + +IL+NL M A ++ GK+TI +D I ++ G Sbjct: 555 QSSVEVNRHQLLQILVNLQMNAIHAMNGKGKLTIRSEDWCEYGDVLGAIVHIEDEGCGI- 613 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ D + D + L + + + S L Sbjct: 614 KPEYLKRVFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIRVQSEWGKGSTFSVYLP 668 >gi|313673000|ref|YP_004051111.1| multi-sensor signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939756|gb|ADR18948.1| multi-sensor signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 670 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 13/225 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLI 53 M K + +S +L +L S + HD + + I N L ++ E + E+ + Sbjct: 447 MTKELEQYKASKNLE-MLVSGLAHDFNNLLAGISNYLIIIKEKNKDPEIELLLERTLAAY 505 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + ++ L F + VD + + V + ++ Sbjct: 506 KRAANLVKQILSFSKGIQLNYSDVDIADLIRQSLSLNTAGKNVKTNLIDNYNKNIKCDPN 565 Query: 114 ERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++ N+ + A S GK+ D + +K NG EK +I Sbjct: 566 LISEVFDNIIINALQSTTDNGKIDILLEPYKIDDVDFVSIKIKDNGCGI-PREKIDKIFQ 624 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y V L+ ++ + + + +L Sbjct: 625 PLYTTKSKGSGLGLYMVKLIVEKHGGIIKVDSEEGKGTTFQVILP 669 >gi|268317058|ref|YP_003290777.1| Histidine kinase [Rhodothermus marinus DSM 4252] gi|262334592|gb|ACY48389.1| Histidine kinase [Rhodothermus marinus DSM 4252] Length = 919 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 69/237 (29%), Gaps = 24/237 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56 + L +D L S I H++ +P+ +I E++ E + +I Sbjct: 664 QAANERLKELDRLKDEFISTITHELRTPLTSIRAFSEIMHANPNLPEAQRQEFLGIIIKE 723 Query: 57 SMSAIIRLKF-MRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGE 107 + + + L +G+V+ + +++ + + VS Sbjct: 724 AERLTRLINQVLTLQKLESGTVELNLEPVRMQEVIEEAVEAIQPHVQFNGITLTVSVPET 783 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPE- 162 + +R +++ L + ++ + + ++ NG + Sbjct: 784 PCYVLGDRDQLVQVLLNLLSNAVKFCNPEDGRIAVRLLVEPDRVRVDVEDNGPGIAPEDQ 843 Query: 163 ----KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + R+ E H S L + Sbjct: 844 ATIFDKFRQVHTSTGRRPPGTGLGLAIAQRIVQHHHGRIWVESEPGHGATFSFTLPR 900 >gi|94308986|ref|YP_582196.1| osmosensitive K+ channel signal transduction histidine kinase [Cupriavidus metallidurans CH34] gi|93352838|gb|ABF06927.1| osmosensitive K+ channel signal transduction histidine kinase [Cupriavidus metallidurans CH34] Length = 967 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 18/232 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------------E 46 A+ ++ S L + L + + HD+ +P+ + E L + + Sbjct: 717 AQRALVSIESERLRSSLLAAVSHDLRTPLTGLIGMAETLQRAEMPLPASVAETVEAMRVQ 776 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + M+ + ++ + S++ LIG + + + Sbjct: 777 AQRMRTMVVNLLDMARLQHHDLALKRGWQSLEELIGAALASMRDVLGRHHVEVMNLVELP 836 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++L NL A P G + I +E S++ G + + Sbjct: 837 LVECDDVLMERVLCNLLENAAKYTPAGTAIRIRGAVVGDEVQLSVEDEGPGVQSGQERYI 896 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G ES + + + R+ E H + L + Sbjct: 897 FEKFTRGERESATSGVGLGLAVCEAIMQAHGGRIWVEAAHPHGSRFTLALPR 948 >gi|332799516|ref|YP_004461015.1| integral membrane sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332697251|gb|AEE91708.1| integral membrane sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 572 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSS 57 K++ DL I H++ +P+ + E L + D + +I + Sbjct: 337 KDVTRERKLEDLRKEFLGDISHELRTPLTYLQGYTEALLDGLVENREEHDRYLNVILEET 396 Query: 58 MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + D + + I D ++ ++++ Sbjct: 397 LRLRRLVDELLQLSHIEAGHLNIKKDRVSIKDLIERVSKKVLPICDDKNIELKIEIEDIP 456 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++++NL A K+ I Q K I S+K +G+ E Sbjct: 457 SITADEDRIEQVMINLIDNAVRYSSNDSKIIIKAQSCKEGIIISVKDSGSGIPEDELPFI 516 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + R+ + + S L+ Sbjct: 517 WERFYKVDKSRTRQKSGTGLGLAIVKKIVELHGGRVWAKNCPEGGAEFSFLMP 569 >gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185] gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185] Length = 500 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 57/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIR 54 A+ + + L + + H+I +P+ AI ++ L + D V + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIASTYNELSDEERADFVRLISI 319 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SW 104 S + + L+ + ++ ++ +++D Q+ Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTYSCCSLKSMMKDIEKEQAVKQLPEIEIKALLPDD 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ N A S + ++ G Sbjct: 380 DIYINTDATRLKQVICNFINNARKFTEKGYIHFGFTSHSEKDQLVYLFVEDTGEGIPQEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E L Sbjct: 440 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVESEIGKGSRFIVTLP 492 >gi|228946261|ref|ZP_04108589.1| hypothetical protein bthur0007_24080 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813395|gb|EEM59688.1| hypothetical protein bthur0007_24080 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 413 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404 >gi|219847337|ref|YP_002461770.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541596|gb|ACL23334.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 793 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 66/243 (27%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQ 51 AK + + + A+ L I HD + + I S+EL D + Q Sbjct: 408 AKLQAQLVQAQKMEAIGQLAGGIAHDFNNILTVITGSVELAMLEIDSDHAIYPELEAIRQ 467 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + L F R G VD + D ++ I ++Q+ + Sbjct: 468 SAARAGELVRQLLTFARRQPGQPQLVDVNRQINDTMNMMRRLIGEHIQLQLQLDEHIERV 527 Query: 112 SRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKI 153 + A++ L A ++P + + + S+ Sbjct: 528 MIDPAQLEQVLINLVVNARDAMPNGGELTIRTTSQYFSVNDLPPLRQIQAGKYVLLSVCD 587 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + I + + + + ++ L + + + Sbjct: 588 TGVGI-AEQIRPHIFEPYFTTKPMGQGSGLGLAICDGIVTQHGGFLTVDSQPGYGSCFTV 646 Query: 212 LLE 214 L Sbjct: 647 ALP 649 >gi|189220110|ref|YP_001940750.1| Signal transduction histidine kinase with PAS domain [Methylacidiphilum infernorum V4] gi|189186968|gb|ACD84153.1| Signal transduction histidine kinase with PAS domain [Methylacidiphilum infernorum V4] Length = 398 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 76/238 (31%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD---------------EVG 44 + + S L + +L + + H++ +PI A+ +L++ + Sbjct: 139 REKTLEAIESEKLNLLTMLAAGVAHELGNPINALGIHFQLIEKKYKKLLQQKNGQIGDKE 198 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS----LIGLGDIEQVIEDFIAVDKRV 100 IE+ + I +F++ + + +E + + +D + Sbjct: 199 IENSFAAIRSEIRRLDGIINQFLKAIRPSPPKLRLLSLNQVLKQAVEFLSPEIQNLDILI 258 Query: 101 QVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 ++ L +R ++ + ++ + G + IS + I S + NG Sbjct: 259 EMDLDQGLPLLRADRNQLKQAFYNILKNGIEAVGKNGIIKISTHADDSFLIVSFQDNGTG 318 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + V + ++ + E + LL + Sbjct: 319 I-AQEAMSHLFKPYFTTKSSGTGLGLLIVRRIIRDHGGEVQIESQKGKGTTVKILLPR 375 >gi|182413565|ref|YP_001818631.1| histidine kinase [Opitutus terrae PB90-1] gi|177840779|gb|ACB75031.1| histidine kinase [Opitutus terrae PB90-1] Length = 1452 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 64/225 (28%), Gaps = 21/225 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLK 65 S ++ + +L I HD + + I +L L + ++ A + Sbjct: 1083 SKLESLGVLAGGIAHDFNNLLTVIMGNLSLAKIDPKIEPDTVRCLSESERAAARARDLTQ 1142 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRERAKILL 120 + + L D+ + F +V+ + + A+++ Sbjct: 1143 QLLTFAKGGEPMRMPTRLPDLVREAAQFALHGAKVRCDYQIASDLWPASVDRGQIAQVVH 1202 Query: 121 NLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 N+ + A+ ++P S + ++ +G E +I + Sbjct: 1203 NIVINANQAMPTGGRIEIGLQNEMVLEPRSGLEPGRYVRMTVADSGAGI-PAETLGRIFE 1261 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + I + L Sbjct: 1262 PYYSTKPQGTGLGLATVYSIVRRHEGHIEVRSIVGEGTTFTTWLP 1306 >gi|196032662|ref|ZP_03100076.1| sporulation kinase B [Bacillus cereus W] gi|254722622|ref|ZP_05184410.1| sporulation kinase B [Bacillus anthracis str. A1055] gi|195995413|gb|EDX59367.1| sporulation kinase B [Bacillus cereus W] Length = 422 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413 >gi|119944485|ref|YP_942165.1| C4-dicarboxylate transport sensor protein ATPase subunit [Psychromonas ingrahamii 37] gi|119863089|gb|ABM02566.1| sensor protein for C4-dicarboxylate transport, sensor protein, ATPase domain [Psychromonas ingrahamii 37] Length = 594 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 68/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 + + + S L L L + I H++ +P+ AI + E L+ I+ Sbjct: 360 LRETQKELIQSAKLAVLGQLSASISHELNNPLAAIRSYAENAIIFLERDKIDKVSNNLIR 419 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104 + L + + F R + G + L ++++ + Sbjct: 420 ITYLTDRMAKISSQLKAFARKSNGELSIISLQPVLMASYELVKPQLKASRVLLHMNLPDK 479 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162 + + +I++NL A ++ + I + + + + G + Sbjct: 480 PVQVKAEPIQLEQIVVNLLSNAIQAMEECKEKQIEIILSVNGQQAQIEVIDTGIGINESD 539 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + ++ + D L Sbjct: 540 L-AKLFEPFFTTKEMGLGLGLSISQQIIKNMHGKIWAKNRQDQGAKFCVSLP 590 >gi|218680186|ref|ZP_03528083.1| two-component sensor histidine kinase [Rhizobium etli CIAT 894] Length = 270 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 51/233 (21%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 + L + L + I HD+ +P+ AI + L + +++ + S Sbjct: 27 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFTAMPEEDRSDLLSTVVDES 86 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + I + ++ + + Sbjct: 87 ERLNRFIANLLDMTKIESGAMEPNSAPHYAGDIVGSALRRAAKILEHHKTEMRIPADLPM 146 Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + NL A P G V I + + + G + Sbjct: 147 VRVDPVLFEQAIFNLLDNAAKYAPEGSVVRIEGWADADYVVVQVSDEGPGIPPADLARVF 206 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 D + + V + L K Sbjct: 207 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRMAGQGAVFTIRLPK 259 >gi|159898794|ref|YP_001545041.1| osmosensitive K+ channel signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891833|gb|ABX04913.1| osmosensitive K+ channel signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 895 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 60/232 (25%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 A+ + + + L S + HD+ +P+ AI + L + + +LI+ + Sbjct: 653 AQAASVQIETERMRNSLLSSVSHDLRTPLAAISGAASTLLDQTNQLDQHIQHELIQTIAD 712 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTG 106 + + T + + Q + +++ Sbjct: 713 EGQRLNRLLSNLLDMTRLEAGAVQVHKEWQALEEVLGTALARLAPQIDQRSISIELPNQA 772 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 S ++L+NL + P + I + + +G T Sbjct: 773 FVPFDSILIEQVLVNLLENSLKYSPSSSPIEIRAVERIGLIEVQIADHGPGIPPSALETI 832 Query: 167 IVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + E + + L Sbjct: 833 FEKFFRVQAKRSASSGVGLGLTICRGIIEAHGGTIWAENRPAGGAIFAFTLP 884 >gi|218437440|ref|YP_002375769.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218170168|gb|ACK68901.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 703 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 61/241 (25%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSS 57 + ++++ L S I HD+ + + I +LL ++ ++I +++ Sbjct: 324 ETERLQSQRLEIIGSLASGISHDLNNILTPILGMAQLLPRKLPHADEQIQQMFKIIEINA 383 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113 L+ + I + + I ++ Sbjct: 384 QRGASLLRQILTFSRGFTPKQDPILVDSLLSDITHLAQETFPKSITIDNFIPPNLWAIRG 443 Query: 114 ---ERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKING 155 + ++L+NL + ++P + + ++ G Sbjct: 444 DTTQIHQVLMNLCLNGRDAMPDGGNLTLTAQNMVIDECYTSMETNAQPGLYVVITVSDTG 503 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + S + V+ + + + L Sbjct: 504 VGI-PEPIKKRIFEPFFSSKELGKGTGLGLSIVMNIVKNHGGFIKVLSEPGKGSQFQVFL 562 Query: 214 E 214 Sbjct: 563 P 563 >gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 1070 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 62/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + S + + + H+I +P+ + ++L + ++ + + S Sbjct: 677 LARERAESASYAK--SQFLANMSHEIRTPLNGVLGMTQVLHMTELTEQQSRHVETIRSSG 734 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + +++ + E +A+D + Sbjct: 735 QALADLIDDILDISKIESGMIELEQRAFEMPELVAMVSDITRLRAQEKQLALDMSLAPDV 794 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + +IL+N+ A G +++ F + G Sbjct: 795 AKVVVGDEKRLRQILINIVGNAVKFTDSGRVSIDIRAGAEDVVEFRISDTGPGIEPDHLA 854 Query: 163 -KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + L + E + L Sbjct: 855 SIFDRFAQADNSITRQYGGTGLGLAICHELVTLMGGEIGVESVPGEGSTFWFKLP 909 >gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 513 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 276 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 333 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ F ++ + + + K + Sbjct: 334 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISEIEIKSLLPDE 393 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ N A + + ++ G+ Sbjct: 394 DVYINTDITRLKQVICNFINNARKFTQKGYIHFGHTLDNRNADSVQIFVEDTGSGIPQEC 453 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + L Sbjct: 454 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 506 >gi|253572402|ref|ZP_04849805.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838177|gb|EES66265.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 869 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEIGQFIATINK 692 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + + R+ + Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLLRMPDN 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF-- 160 + + +++ NL A G +D ++ G Sbjct: 753 EKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + + Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRIP 865 >gi|229083005|ref|ZP_04215420.1| hypothetical protein bcere0023_55880 [Bacillus cereus Rock4-2] gi|228700306|gb|EEL52877.1| hypothetical protein bcere0023_55880 [Bacillus cereus Rock4-2] Length = 675 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 72/222 (32%), Gaps = 13/222 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + +A + ++ + L Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTFLLNL 665 >gi|119486866|ref|ZP_01620841.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456159|gb|EAW37292.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 372 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 M KN+ LS + + L S HD+ +P+ AI S +LL+ + + I+ Sbjct: 129 MQKNLENVQLSKEE-KSRLLSIASHDLRTPLSAIQMSSDLLENYDQKLTSEKKIKHFQRI 187 Query: 60 AIIRLKFMRLAFGYTGS------------------VDSLIGLGDIEQVIEDFIAVDKRVQ 101 +L + + + D ++ Sbjct: 188 KSAIKNMNQLLEDVLMLSLTESGKMVFKPTPLILKQYCSNLIDSFQVLFTDKHTLEFNCN 247 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + + + IL NL A P GG + + + +F ++ G Sbjct: 248 CNYERKLMLDEKLLNHILGNLLSNAIKYSPEGGTIHFDLIQESQKVVFRVRDEGIGLPPE 307 Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F I + V + + E + + Sbjct: 308 YKAKLFQSFERAANVGEIKGTGLGLSIVKQAVDLHGGEISVESEVGKGTTFTVTIP 363 >gi|29346941|ref|NP_810444.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|298386399|ref|ZP_06995955.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|29338839|gb|AAO76638.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|298260776|gb|EFI03644.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 869 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEIGQFIATINK 692 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + + R+ + Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLLRMPDN 752 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF-- 160 + + +++ NL A G +D ++ G Sbjct: 753 EKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIFVEDTGVGISEEG 812 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + + Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRIP 865 >gi|257865289|ref|ZP_05644942.1| histidine kinase [Enterococcus casseliflavus EC30] gi|257871617|ref|ZP_05651270.1| histidine kinase [Enterococcus casseliflavus EC10] gi|257874889|ref|ZP_05654542.1| histidine kinase [Enterococcus casseliflavus EC20] gi|257799223|gb|EEV28275.1| histidine kinase [Enterococcus casseliflavus EC30] gi|257805781|gb|EEV34603.1| histidine kinase [Enterococcus casseliflavus EC10] gi|257809055|gb|EEV37875.1| histidine kinase [Enterococcus casseliflavus EC20] Length = 613 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 70/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E +D + L R Sbjct: 383 FVSNVSHELRTPLTSMRSYIEALSEGAWKDPEIAPNFLKVTLDETDRMIRMINDLLSLSR 442 Query: 69 LAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 + G + I ++ ++ + ++ +T ++ + + ++ Sbjct: 443 MDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQV 502 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T+ + ++ N + S+ G + F + + Sbjct: 503 IDNIMNNAIKYSPDGGIITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARA 562 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E ++ +L Sbjct: 563 RQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603 >gi|229089450|ref|ZP_04220721.1| hypothetical protein bcere0021_2980 [Bacillus cereus Rock3-42] gi|228693927|gb|EEL47619.1| hypothetical protein bcere0021_2980 [Bacillus cereus Rock3-42] Length = 271 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS++DL+ + + I H+I +P+ I L+LL E ++ + Sbjct: 45 EQELKRLSNIDLIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 104 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + + Sbjct: 105 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 164 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 165 NEIRQLLMNLYRNGLEAMGTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 223 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 224 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 260 >gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 608 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 26/231 (11%) Query: 10 SSMDL---VALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 L + + H++ +P+ I + LE L ++ + + + + R + I Sbjct: 369 EQEKLERSRKEFVANVSHELRTPLTTIKSYLEALGDGAIEDPQLSERFLGVTRNETERMI 428 Query: 62 IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + T D L + D V + V V I Sbjct: 429 RLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQSRQRKIRIDVSVDARVGSIS 488 Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE---KFT 165 + R+ ++L NL A G V I + S++ G + F Sbjct: 489 IDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEISVEDTGIGIPKKDLSRIFE 548 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + E + +S L Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYNVGTRVSFTLP 599 >gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase [Methanococcus aeolicus Nankai-3] gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase [Methanococcus aeolicus Nankai-3] Length = 640 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 N L + + S + H++ +P+ +I +EL+ + + +++ + Sbjct: 408 NELKKLDKFK--SEIISIVSHELRTPLTSIKGYVELVLDGTMGTINESQKRCLEIANENI 465 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIA--VDKRVQVSWTGE 107 + M V+ + ++ ++ K + Sbjct: 466 DRLKRLIDNMLDLSKIERGELKMDISKVNLNDIVQNVVHSLKPLADGKNIKIINKVEPIT 525 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +L NL A P VTI N ++K NG E Sbjct: 526 ANLDKDKITGVLTNLIENAIKFSPVNENVTIEAFKENNMVHITVKDNGPGIPKSELTKIF 585 Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ E LL Sbjct: 586 DIFYQVNSSAKRIKSGSGLGLAICKSIVESHGGKIWVESKFGKESTFHILLP 637 >gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] Length = 373 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFG---- 72 L + H++ +P+ A+ E L + +E E + I+ + ++ + L Sbjct: 150 LIGTVAHELRTPLSALQAYAEALADGVMEPEKAAERIQQEVRAMSRLVRDLSLVSQVESG 209 Query: 73 ----YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLFM 124 + G +D L + + S+ + ++L NL Sbjct: 210 AVELHPGPLDPKELLEQAAERFRPAFQAKGVALEVAAPSFLPRVWADAERTLQVLANLLS 269 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179 A P GG+V + + + +FS++ G F + + Sbjct: 270 NALRHTPEGGRVRLGAERTGQAVVFSVEDTGPGIPEEHLPRIFERFYRIDPSRSRQDGGT 329 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L R+ E V L Sbjct: 330 GVGLTIAKSLVEAMGGRIWVESQLGRGSVFRFTLP 364 >gi|297569444|ref|YP_003690788.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] gi|296925359|gb|ADH86169.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 65/230 (28%), Gaps = 17/230 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + L S L L + + + H+I +P+G I ++ +L L + Sbjct: 252 RRRLEQQLHDSEKLATLGRMVASVSHEIKNPLGIIRSTAAILGKRVKQEAPGNEHLAEII 311 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEK 108 +R + + + + Sbjct: 312 VSETGRLDGIVREFLDFARPQTLHSSPEFINQVIRQAFTFLAPELQRRGIETVLELDEGL 371 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 L+ +R +I L A ++P GG +T+ + + + + + G + E+ Sbjct: 372 PPLAIDREQIYRALLNIMLNAIQAMPGGGTLTLRSRRRRGDQLVEIADTGPGIKEEER-E 430 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + V + ++ ++ + K Sbjct: 431 RIFSPFHTGRHRGTGLGLAIVKNIIDAHRGKIEVADEPGGGACFQLIFSK 480 >gi|260433701|ref|ZP_05787672.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157] gi|260417529|gb|EEX10788.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157] Length = 360 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 14/234 (5%), Positives = 56/234 (23%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64 + + + + H++ +P+ A+ +E L + D ++++ + + Sbjct: 113 QARQMRRDFVANVSHELRTPLTALMGFIETLRGPAKGDPEAHDRFLRIMADEANRMNRLV 172 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + ++ ++L + Sbjct: 173 GDLLSLNRVESEERIRPRERVELTELLNATLSSLRPLADGAGVVLSLTVPSSPVELVGDN 232 Query: 116 AKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164 ++ + ++ + + G Sbjct: 233 DQLRQVFTNLVENAIKYGGSGGKVDLIVTESERDAAIRGPAVRVQVIDKGLGIDPVHLPR 292 Query: 165 --TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL E V + +L Sbjct: 293 LTERFYRADSHRSRELGGTGLGLAIVKHIVNRHRGRLRVESEPGKGAVFTVVLP 346 >gi|163731861|ref|ZP_02139308.1| phosphate regulon sensor protein, putative [Roseobacter litoralis Och 149] gi|161395315|gb|EDQ19637.1| phosphate regulon sensor protein, putative [Roseobacter litoralis Och 149] Length = 347 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 17/239 (7%), Positives = 61/239 (25%), Gaps = 33/239 (13%) Query: 9 LSSMDLVALL----CSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59 +S ++ + + + H++ +P+ A+ +E L ++ D + +++ + Sbjct: 103 VSHLEQAGQMRRDFVANVSHELRTPLTALMGFIETLRGPAREDAAARDRFLDIMQGEAGR 162 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKID 110 + + G + + + Sbjct: 163 MNRLVGDLLSLSRVEGDQRVRPRKSVNLSDVVSSVARTLAPLAKDTSVVLDCDLPDHPVG 222 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD----------SKNENIFSLKINGNLARF 160 L + +++ + + ++ G + S+ G Sbjct: 223 LIGDADQLMQVVTNLVENAIKYGASGGRVIIKLTEVARDLSLRAPGVYISVTDFGPGIDP 282 Query: 161 PEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL E + +L Sbjct: 283 VHLPRLTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIESELGQGATFTVVLP 341 >gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] Length = 441 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 65/241 (26%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIR 54 MA N+ + + + + + HD+ SPI +I LE + + + + Q Sbjct: 192 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVHMKDGDLPPQERQRYV 251 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------------EQVIEDFIAVDKRVQ 101 +++ RL + +++ I Q ++ Sbjct: 252 KTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 311 Query: 102 VSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + L A P GG+V + + + + E ++ G Sbjct: 312 ADLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNEQGEVCVAVADTGPGI 371 Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + + + + L E L Sbjct: 372 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTSFRFCL 431 Query: 214 E 214 Sbjct: 432 P 432 >gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 845 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 49/234 (20%), Gaps = 24/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S L + + H++ +P+ I ELL + + S Sbjct: 609 AREKAEEASRQKSAFL--ATMSHELRTPLNGILGFAELLKYELDNPSHQEYATVIQQSGE 666 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 + + + D V Sbjct: 667 HLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQVTATAKGLGFDLNVAEGLP 726 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +IL NL A +G E F++ G Sbjct: 727 EQLVTDPLRLRQILNNLLSNAVKFTEQGKISLTVRPA-GQEIAFAVSDTGAGIPPESLDM 785 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V LA R+ E + L Sbjct: 786 VFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLESAVGVGSTFTVYLP 839 >gi|294812875|ref|ZP_06771518.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] gi|294325474|gb|EFG07117.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] Length = 738 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 21/229 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58 L + + S + H++ +P+ I LE + E + ++ Sbjct: 492 HRARLEAQRRA--MVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAAFVDSLLEEAVQLQH 549 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113 G + ++ + ++V LS Sbjct: 550 IIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSA 609 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + ++ + A PRGG VT+ + G + F + Sbjct: 610 DPVRLRQAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRF 669 Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L + + E V + LL Sbjct: 670 WRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTLLLP 718 >gi|229197363|ref|ZP_04324090.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293] gi|228585987|gb|EEK44078.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293] Length = 448 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448 >gi|326441348|ref|ZP_08216082.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 694 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 21/229 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58 L + + S + H++ +P+ I LE + E + ++ Sbjct: 448 HRARLEAQRRA--MVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAAFVDSLLEEAVQLQH 505 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113 G + ++ + ++V LS Sbjct: 506 IIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSA 565 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + ++ + A PRGG VT+ + G + F + Sbjct: 566 DPVRLRQAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRF 625 Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L + + E V + LL Sbjct: 626 WRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTLLLP 674 >gi|254389790|ref|ZP_05005014.1| integral membrane sensor signal transduction histidine kinase [Streptomyces clavuligerus ATCC 27064] gi|197703501|gb|EDY49313.1| integral membrane sensor signal transduction histidine kinase [Streptomyces clavuligerus ATCC 27064] Length = 478 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 21/229 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58 L + + S + H++ +P+ I LE + E + ++ Sbjct: 232 HRARLEAQRRA--MVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAAFVDSLLEEAVQLQH 289 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113 G + ++ + ++V LS Sbjct: 290 IIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSA 349 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + ++ + A PRGG VT+ + G + F + Sbjct: 350 DPVRLRQAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRF 409 Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L + + E V + LL Sbjct: 410 WRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTLLLP 458 >gi|81325113|sp|Q9RDT3|WALK_STAAU RecName: Full=Sensor protein kinase walK gi|6689207|emb|CAB65401.1| VicK protein [Staphylococcus aureus] Length = 415 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 186 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 245 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 246 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 305 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 306 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 365 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 366 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 404 >gi|92114208|ref|YP_574136.1| periplasmic sensor signal transduction histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91797298|gb|ABE59437.1| periplasmic sensor signal transduction histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 699 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 57/240 (23%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + ++ L AL L + I H+I +P I +EL+ + + + I Sbjct: 430 LKQARASLMTQEKLAALGELTAGIAHEINNPAAVILGHVELIADTLGPDVAPVRDEVDTI 489 Query: 54 RLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + D D E ++ + VS Sbjct: 490 IAQVERIRALIDNLLQYSRAGGGQEPAFRAEDINAIAADTEVLVRHALDKHGHRLVSALH 549 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI------------FSLKIN 154 + R ++ L + + +++ + Sbjct: 550 ATRPVECHRGQLQQVLINLLLNAAQASTAPVTIHLVTRDSVREVPGRGDLDGVEIRVADP 609 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G +I D + + + + + + L Sbjct: 610 GPGM-SKAVRQRIFDPFFTTREAGSGLGLAISAGIVRRSGGDIGVASRPGRGTIFHVWLP 668 >gi|314934942|ref|ZP_07842301.1| sensory box histidine kinase VicK [Staphylococcus caprae C87] gi|313652872|gb|EFS16635.1| sensory box histidine kinase VicK [Staphylococcus caprae C87] Length = 610 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+E + + + + R + I + + Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDESLAPQFLSVTREETERMIRLVNDLLQLSK 440 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ ++ ++ N+ Sbjct: 441 MDNESDQITKEIVDFNMYINKIINRHEMAAKDTTFVREIPQQTIFTEIDPDKMTQVFDNV 500 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 501 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599 >gi|313622400|gb|EFR92864.1| two-component sensor histidine kinase [Listeria innocua FSL J1-023] Length = 591 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKF 66 ++ + + + H++ +P+ A+ E L + + DE++ +I+ S + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 67 M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + V E E I V + + Sbjct: 423 ILALSRIEQNPVTENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTNPPIIIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + + + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGQIEVESQEEVGSTFRVTLPK 589 >gi|325680003|ref|ZP_08159572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324108441|gb|EGC02688.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 455 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 72/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + +N + L S + H+ +P+ +I +LL + + Sbjct: 214 LQRNFNKMAQELSGIETLRGDFISNVSHEFKTPLASIQGFAKLLQDPLLSSADRAEYTQI 273 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 + RL + +++ +G ++ D + + K D+ + Sbjct: 274 IIDETSRLSKLSSNILSLTKLENQTTIGKKKRFRIDEQIRKIILMLEPEWSKKDIDMDID 333 Query: 115 ------------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 +I N+ A P+ G + +++ N + + NG Sbjct: 334 LEDIIYVGNEDLMGQIWQNIINNAIKFTPQNGIIKVNLFRGGNGIVTKIWDNGPQIPADK 393 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + G+ + + + V + ++ + + VV + L Sbjct: 394 KDKIFEKFYQGDRSRATEGNGLGLALVKRIVDLADGKISVDNPFEGGVVFTVELP 448 >gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides fragilis 638R] Length = 411 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 61/229 (26%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 +S+ L + + + H+I +P+ AI LL + E + + + + Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240 Query: 64 LKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGE 107 L+ + + D L + ++ + +++ + Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLKDKPEIKLNCEAGTDEWI 300 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +I+ NL A G ++E F + G E +I Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E L Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408 >gi|223043418|ref|ZP_03613464.1| sensor protein YycG [Staphylococcus capitis SK14] gi|222443207|gb|EEE49306.1| sensor protein YycG [Staphylococcus capitis SK14] Length = 610 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+E + + + + R + I + + Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDESLAPQFLSVTREETERMIRLVNDLLQLSK 440 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ ++ ++ N+ Sbjct: 441 MDNESDQITKEIVDFNMYINKIINRHEMAAKDTTFVREIPQQTIFTEIDPDKMTQVFDNV 500 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 501 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599 >gi|89896745|ref|YP_520232.1| hypothetical protein DSY3999 [Desulfitobacterium hafniense Y51] gi|89336193|dbj|BAE85788.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 463 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+N+ L + I H++ +P+ +I + +E + E + +I Sbjct: 225 MAENLK---KQERLRKQFTADIAHELRTPLTSIRSYIEAFQDGVLPANKENLAIINEEIE 281 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + +R + ++ + + + Sbjct: 282 RLTRLSSDLKDLNVAEMGALRPYLTQVNLSALIDKTVNMLSPLIQEKGISLAWHKPESTL 341 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 ++ NL A+ GK+ + ++ E + ++ +G + F Sbjct: 342 IEGDEYLLTRLFYNLLHNAYKFTESPGKIEVQMELRHQEALITISDSGIGIPEEDLPFIF 401 Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I +A ++ L E D LL Sbjct: 402 ERFYRSEKSRSRETGGTGIGLALAQQIALLHQGTLTVESCPDKGSRFMLLLP 453 >gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1039 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53 + + + + + + H++ +P+ AI +LL + ++ I Sbjct: 646 LEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQLLRNRKFDEATTARALETI 705 Query: 54 RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ S ++ + L+ V + D + + ++ + + Sbjct: 706 ERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAAIDTVRPAAEAKEINIKCKF 765 Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--- 158 + + +++ NL A +GG V + ++ ++ + G Sbjct: 766 DPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLERIESSVQIRVSDTGVGIAAE 825 Query: 159 RFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 P F + + + + V L + + E L Sbjct: 826 FLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTVSVESLGVGQGATFIVNLP 884 >gi|301064751|ref|ZP_07205131.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300441126|gb|EFK05511.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 575 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 14/224 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M + + + L A+ L S + H+I +P+ AI + + L E ++ + Sbjct: 350 MEQRLQ---QAERLSAMGRLASGVAHEIRNPLNAISMACQRLKEENLQQLSGVIRNEIGR 406 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDL 111 +I +F+ L+ ++ ++QV + + Sbjct: 407 LNMIVEEFLGLSKERRLKLEKTDLAELVQQVGLLMKEEARARGIEIRTTGIETKLMMRLD 466 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDG 170 + L+N+ A ++ G VTI + + + +L G + +I + Sbjct: 467 GNRIKQALINMVKNAMDAIVASGTVTIGIHRKGKDMAVVTLSDTGTGLSEQDL-DKIFNL 525 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + +L Sbjct: 526 DFTTKEQGLGLGLALSHEIIKAHGGEIRVQSTPGVGTTFLIMLP 569 >gi|228960940|ref|ZP_04122573.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798836|gb|EEM45816.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 862 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 58/235 (24%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55 M + L + L + + + H+I +P+ AI +LL + + + I Sbjct: 626 MREARDKALQTDKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTTEEVAQFIATINK 685 Query: 56 SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + M F L + D +++ Sbjct: 686 NCGLLLALINDILDLSRIESGTMEFIFAEHNLPLLLKTVHDSQRLNMPPGVELLLRMPEG 745 Query: 105 TGEK-IDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160 + + +++ NL A G ++ ++ G Sbjct: 746 DKKYLQTDNVRLQQVVNNLINNAAKFTFSGSITFGYEEEEEPGYTRIFVEDTGVGISEEG 805 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + K + + L Sbjct: 806 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 858 >gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM 22836] Length = 916 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/229 (9%), Positives = 59/229 (25%), Gaps = 20/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK L + L S + H+I +P+ AI ++ E +++ ++ Sbjct: 550 AKLKAEQLDKLKSAFL--SNMSHEIRTPLNAILGFSRIIAETDDQEKRNYYFNFVESNSG 607 Query: 62 IRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + ++ + + + + Sbjct: 608 RLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCHPETELIYNNIGAELW 667 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL + A + G + + N + +G ++ +I Sbjct: 668 IRSDRNRIHQVLSNLIINAQKFTKK-GYIKYGFEVIDNNVKVYVNDSGIGI-VEDQLDKI 725 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + + L Sbjct: 726 FERFMQVDSNAIGTGLGLAICRSIVERLGGEISVTSELQKGSCFTFTLP 774 >gi|296128219|ref|YP_003635469.1| response regulator receiver sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] gi|296020034|gb|ADG73270.1| response regulator receiver sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] Length = 332 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA + + L A L + + H++ +P+ I LE +++ +++ M ++R S Sbjct: 98 MAARLQ---EAERLRARLLADVAHEVRTPVATIAGYLEAVEDGLQPMDEPTMAVLRDQSA 154 Query: 59 SAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-G 106 + + + L + VD RVQV G Sbjct: 155 RLTRLARDLAAVTRAEAGDLVLTLEPLAPDELLAATTGTWRERATAAGVDVRVQVDPELG 214 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + ++L NL A P GG +T+ + G P Sbjct: 215 HVRVDRQRMGQVLDNLVANALRHTPAGGTITLRATGGYQRVALHVSDTGAGIAPEHLPHL 274 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 F + + I L + + + L Sbjct: 275 FERFYRADTARDRTHGGSGIGLAICKALTEAHGGTITATSDGPGAGASFTVTLP 328 >gi|209693816|ref|YP_002261744.1| osmolarity sensor protein [Aliivibrio salmonicida LFI1238] gi|208007767|emb|CAQ77888.1| sensor outer membrane protein EnvZ [Aliivibrio salmonicida LFI1238] Length = 435 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 70/218 (32%), Gaps = 7/218 (3%) Query: 4 NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60 + + ++ ALL + + HDI +P+ I + E++ + + + +++ + Sbjct: 215 QMAKGIQQLEQDRALLMAGVSHDIRTPLTRIRLATEMMSPQDDYLAESMIKDTEECNEII 274 Query: 61 IIRLKFMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + +++ VD + ++ + K + + +++ Sbjct: 275 GQFMDYLKPVAKQDFIDVDINTIVNEVILAEGGYEREIKTNLANIPQSVHGNAIAIKRVI 334 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176 NL + A V+ V ++ NG + F G+ Sbjct: 335 TNLVVNAIRYGGDWIAVSTRVSADHKTAWIIIEDNGPGIDEAQLESVFEPFTRGDTARGS 394 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +++ + + + + L Sbjct: 395 EGTGLGLAIVKRIVGQHQGEVSLANRREGGLKVQVKLP 432 >gi|184154492|ref|YP_001842832.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO 3956] gi|183225836|dbj|BAG26352.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO 3956] Length = 619 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 65/226 (28%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ + +E L + I D + + + + L+ Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELASRFLGVVSDETERMIRMINDLLSLSR 439 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113 +G+ + +I ++ + + + + Sbjct: 440 MDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYFTKKDLWVEIDTD 499 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605 >gi|317052769|ref|YP_004113885.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947853|gb|ADU67329.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 388 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 63/226 (27%), Gaps = 18/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61 + L A+ + + I H+I +P+G+I LL ++ + + QL Sbjct: 160 EQQAARNEKLAAMGEMAANIAHEIRNPLGSIELFASLLFRDLADDSKKQQLAANIVSGVR 219 Query: 62 IRLKFMRL-------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + F T +D ++ + + ++ + + Sbjct: 220 NLNSVISNLLLFTRNLSIQKETFDATALLDEVLKFSEHLKYKKNIRTIREVASGVELHGD 279 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 DL + L+ + A DS ++ +G E +I Sbjct: 280 FDLLNQVLLNLVQNAVNAIEESGTIALTVERDTDSDACV-LRVEDDGKGM-DQETLRKIF 337 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L E + + L Sbjct: 338 IPFYTTRARGTGLGLSIVNRIVEAHGGVLNVESQEGLGTTFTIKLP 383 >gi|229015716|ref|ZP_04172698.1| hypothetical protein bcere0030_3040 [Bacillus cereus AH1273] gi|229021913|ref|ZP_04178477.1| hypothetical protein bcere0029_2810 [Bacillus cereus AH1272] gi|228739385|gb|EEL89817.1| hypothetical protein bcere0029_2810 [Bacillus cereus AH1272] gi|228745573|gb|EEL95593.1| hypothetical protein bcere0030_3040 [Bacillus cereus AH1273] Length = 672 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E I ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEESIYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + ++ +V + E + Sbjct: 506 SNSIITEFLSIGNTRKSDLQMFDLNSIIHDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 614 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 59/232 (25%), Gaps = 28/232 (12%) Query: 10 SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSS 57 L + + H++ +P+ I + E L++ +++ + Sbjct: 375 EQEKLEQSRRQFVANVSHELRTPLTTIKSYAEALNDGALDERELSERFVGVIRNETERMI 434 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKI 109 L RL + ++ + D + + Sbjct: 435 RLVTDLLHLSRLDSNQAPLRRRKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAW 494 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168 + ++L NL A GG + +S S+K G + +I Sbjct: 495 LDRDQIDQVLDNLISNAIKYTLEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLS-RIF 553 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + + + ++ L Sbjct: 554 DRFYRVDKARSRNMGGTGLGLSIAREIVKAHGGTISLKSELNDGTTVTFTLP 605 >gi|227514134|ref|ZP_03944183.1| histidine kinase [Lactobacillus fermentum ATCC 14931] gi|227087505|gb|EEI22817.1| histidine kinase [Lactobacillus fermentum ATCC 14931] Length = 619 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 65/226 (28%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ + +E L + I D + + + + + L+ Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELAPRFLGVVSDETERMIRMINDLLSLSR 439 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113 G+ + +I ++ + + + + Sbjct: 440 MDAGTAKLNLEYVNINELFNHILNRFDMIIKNEAADPSQKKYTIVRYFTKKDLWVEIDTD 499 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 560 DKDRSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605 >gi|196040379|ref|ZP_03107680.1| sporulation kinase B [Bacillus cereus NVH0597-99] gi|196028864|gb|EDX67470.1| sporulation kinase B [Bacillus cereus NVH0597-99] Length = 389 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 159 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 218 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 219 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 278 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + I S N+ I ++ +G E+ + + Sbjct: 279 QHFQQCFLNLIKNGIEAMPNGGTLNIFSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 337 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 338 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 380 >gi|157151584|ref|YP_001450079.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1] gi|262282636|ref|ZP_06060404.1| histidine kinase [Streptococcus sp. 2_1_36FAA] gi|157076378|gb|ABV11061.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1] gi|262261927|gb|EEY80625.1| histidine kinase [Streptococcus sp. 2_1_36FAA] Length = 453 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 71/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPEFVKVSLTETNRMMRMVSDLLSLSR 270 Query: 69 LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117 + + L +++ + + I + + + Sbjct: 271 IDNDSSHLDVELTNFTAFITFILNRFDKIKSQDETKKYEIVRDYPITPIWVEIDTDKMTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GGK+T+ ++ ++++ I S+ G + F + + Sbjct: 331 VIDNIMNNAIKYSPDGGKITVGMKTTEDQLIISISDEGLGIPKKDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYEVGSTFTIVLP 432 >gi|317154504|ref|YP_004122552.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944755|gb|ADU63806.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 648 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 75/231 (32%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 +++ +L+ L A+ L + + H++ +P+ ++ +L L + D+ + Sbjct: 383 RSLEEDLNEAKRLAAIGSLAAGVAHEVRNPLSSLRGFAQLFASKLKDQPPLDQYAATMVQ 442 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + L ++ + + F +K+++ + + + Sbjct: 443 EADRLNRVVTDLLYLAKPRRLDPVETDLAEVGESLRQLMRFDFKNKQIEPVFDFAQPTVY 502 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEK 163 ++ ++LLNL + ++ + + + +G P+ Sbjct: 503 ADQDALRQVLLNLISNSLDAIVACEECHKPGHVCLTSERVEGGVCIVVADDGPGM-DPDM 561 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + V + ++ + + + D V + Sbjct: 562 SDDVFKPFVTGKKTGTGLGLAIVQNIMRAHRGKAVLDSRPDEGVRVRLFFP 612 >gi|326202665|ref|ZP_08192533.1| LOW QUALITY PROTEIN: integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987249|gb|EGD48077.1| LOW QUALITY PROTEIN: integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 362 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 68/214 (31%), Gaps = 17/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H++ +P+ AI E+L + ++ + + + RL + + Sbjct: 144 FMSNVSHEVKTPVAAITGFSEILMDGKLDKQEQEEYLQLINNESRRLSVLCENMLQMSRL 203 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------------AKILLNLF 123 D + +V D + ++ ++D+S + ++ NL Sbjct: 204 DYQEIVAKKNKVRIDEQIRKCIILLTQKWYEMDISFDLEMDAVTVESDASLLMQLWTNLI 263 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHD 180 A + I V+ + + ++ +G P+ + + + + Sbjct: 264 DNAIKYSDMKPYIKIRVKKEDGQLLVRIEDDGIGIPKEKLPKIYDKFYQCDESHKKHGNG 323 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E +D V+ + Sbjct: 324 LGLSIVKRILELLHGTISYESEEDEGTVVFVTIP 357 >gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 962 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 59/231 (25%), Gaps = 19/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++I + + S + H++ +P+ ++ EL+ + + + + I + Sbjct: 577 RDITKQFEVDQMKSEFVSTVSHELRTPLSSVLGFTELMLTKELKPERQKKYLTTIYQEAK 636 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 + + + I + + ++V + Sbjct: 637 RLTALINDFLDVQRMESGKQTYDKKYEDIVSIIENVIETQKVNTKIHQFHVQKETNNTTV 696 Query: 117 --------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ NL A P GG +T+ + + ++ G Sbjct: 697 LGDRDKLAQVFTNLISNAIKYSPEGGNITVRIYERGTRLCVDVQDEGLGIPEEAIPNLFT 756 Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + ++ + + L Sbjct: 757 KFYRVDNSDRRRIGGTGLGLAIVKEIVKAHEGEVSVTSELKKGSTFTVSLP 807 >gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 609 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 21/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69 + + H++ +P+ + + LE L + + +Q+++ + I + + Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKEITPRFIQVVQNETERMIRLVNDLLHLS 438 Query: 70 ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILL 120 + + + ++ + + E ++L Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKIIDRFELTKSDNIRFVRNIPREAIFIEVDEDKITQVLD 498 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 N+ A P+GG +T V++ +E I S+ G + F + + Sbjct: 499 NIISNAIKYSPQGGTITFRVRELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + E + + L Sbjct: 559 LGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLP 597 >gi|169342707|ref|ZP_02863748.1| sensory box histidine kinase [Clostridium perfringens C str. JGS1495] gi|169299213|gb|EDS81283.1| sensory box histidine kinase [Clostridium perfringens C str. JGS1495] Length = 571 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 65/222 (29%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ + + I H++ +P+ +I E L + ++ + +I S L+ + Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407 Query: 69 LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118 + +++ + + + + + + + ++ Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 LLNL + +GGKV + + I ++ NG + +I + Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGDINVTSELGVGTKIVITIP 568 >gi|162449626|ref|YP_001611993.1| sensor for high-affinity potassium transport system [Sorangium cellulosum 'So ce 56'] gi|161160208|emb|CAN91513.1| sensor for high-affinity potassium transport system [Sorangium cellulosum 'So ce 56'] Length = 910 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55 A+ + +L L S + HD+ +P+ I + L + G + + L Sbjct: 658 AQRARLEAQAEELRNALLSSVSHDLRTPLATITGAAGALLDDGNDGAALDLAARRDLTQT 717 Query: 56 ---SSMSAIIRLKFMRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + ++ + L + + + + + Sbjct: 718 VLEEAQRLERLVRNLLDMTRLESGALAVRKEWLPLEEVVGAALNRVEEHLRGREISIELD 777 Query: 106 GEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++L+NL A P G + I N + G E Sbjct: 778 RATELVPMDGVLIEQVLINLLENALKYSPAGSPIGIRGFTEGNVATLEINDRGPGIPPGE 837 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E L Sbjct: 838 EEAIFEKFYRGRGHTQRGIGLGLTICRGIVTAHGGRVAAENRPHGGAAFRVTLP 891 >gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] Length = 609 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 21/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69 + + H++ +P+ + + LE L + + +Q+++ + I + + Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKEITPRFIQVVQNETERMIRLVNDLLHLS 438 Query: 70 ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILL 120 + + + ++ + + E ++L Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKIIDRFELTKSDNIRFVRNIPREAIFIEVDEDKITQVLD 498 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 N+ A P+GG +T V++ +E I S+ G + F + + Sbjct: 499 NIISNAIKYSPQGGTITFRVRELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + E + + L Sbjct: 559 LGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLP 597 >gi|323692870|ref|ZP_08107095.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323503045|gb|EGB18882.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 358 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLI 53 + N + +L ++ + I H+ +P+ AI + LL E + +E + I Sbjct: 113 LTDNFNRMVQ--ELGSIESFRNDFVTNISHEFKTPLAAIEGYVTLLQEPSLTEEDRNEYI 170 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVS 103 R+ S + I G ++ + + +K + + Sbjct: 171 RIIMDSTKQLSSMAGNILMLSRLEKQEIVTGKTLFKLDEQIRQSLLMLEPLWENKYLDLD 230 Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++ LNLF A P GG ++ S++ + + G Sbjct: 231 INLPPVRYFGNPDLLMQVWLNLFQNAIKFTPAGGSISASMKLFPDFVEVVISDTGIGM-D 289 Query: 161 PEKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + + + + E D + + L Sbjct: 290 EETMRRIFEKFYSAGRELGRSGNGLGLSITKRILELSGGTITVESSPDEGSLFTVTLP 347 >gi|323483867|ref|ZP_08089244.1| sensor histidine kinase [Clostridium symbiosum WAL-14163] gi|323402821|gb|EGA95142.1| sensor histidine kinase [Clostridium symbiosum WAL-14163] Length = 358 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLI 53 + N + +L ++ + I H+ +P+ AI + LL E + +E + I Sbjct: 113 LTDNFNRMVQ--ELGSIESFRNDFVTNISHEFKTPLAAIEGYVTLLQEPSLTEEDRNEYI 170 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVS 103 R+ S + I G ++ + + +K + + Sbjct: 171 RIIMDSTKQLSSMAGNILMLSRLEKQEIVTGKTLFKLDEQIRQSLLMLEPLWENKYLDLD 230 Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++ LNLF A P GG ++ S++ + + G Sbjct: 231 INLPPVRYFGNPDLLMQVWLNLFQNAIKFTPAGGSISASMKLFPDFVEVVISDTGIGM-D 289 Query: 161 PEKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + + + + E D + + L Sbjct: 290 EETMRRIFEKFYSAGRELGRSGNGLGLSITKRILELSGGTITVESSPDEGSLFTVTLP 347 >gi|314933845|ref|ZP_07841210.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87] gi|313653995|gb|EFS17752.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87] Length = 565 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ D + +I S Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + D Q ++ + ++ Sbjct: 396 SLVMDLLDLSHIEQQTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVIIEAH 455 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168 + A+++ NL A KV + V + ++ G F + Sbjct: 456 ENKIAQVITNLLSNAINYSLEDNKVIVRVFREGKKVNLEIQDFGIGISVKDQKHIFERFY 515 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVT 561 >gi|228917320|ref|ZP_04080874.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842310|gb|EEM87404.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|228983575|ref|ZP_04143780.1| hypothetical protein bthur0001_2990 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776171|gb|EEM24532.1| hypothetical protein bthur0001_2990 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 672 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ + L+LL E ++ + Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDVNSIIHDIIPLIKIDTHNQNKYIQVDTNNVPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ GN PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGNGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|223043560|ref|ZP_03613605.1| alkaline phosphatase synthesis sensor protein [Staphylococcus capitis SK14] gi|222443048|gb|EEE49148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus capitis SK14] Length = 565 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ D + +I S Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + D Q ++ + ++ Sbjct: 396 SLVMDLLDLSHIEQQTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVIIEAH 455 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168 + A+++ NL A KV + V + ++ G F + Sbjct: 456 ENKIAQVITNLLSNAINYSLEDNKVIVRVFREGKKVNLEIQDFGIGISAKDQKHIFERFY 515 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVT 561 >gi|197121089|ref|YP_002133040.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170938|gb|ACG71911.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 373 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +A+ L S L A+ L S + H++ +P+GAI EL E D+++ Sbjct: 134 LAEARASWLRSEQLAAVGRLASGVAHEVGNPLGAIAGYAELARGRIRAGEAAQADDLVAR 193 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE 107 I + + ++ + + + I L D R ++ + Sbjct: 194 IAVEAGRIDAIVRDLLELARPSAPAVAPIALSGPVDAALRLARVQARLKDVRAELDLPAD 253 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + A++LLNLF+ A ++ G + ++ ++ ++ + G + Sbjct: 254 LPPVLADEARLAQVLLNLFLNAGDAMGGRGTLRVTAREVQDRVEIDVADQGPGIGPEDLP 313 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ D + + L + V L + Sbjct: 314 -RVFDPFFTTKPPGAGTGLGLSVSHRLMEAMGGAISAANAPGGGAVFRLRLRR 365 >gi|251796138|ref|YP_003010869.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247543764|gb|ACT00783.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 357 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 68/222 (30%), Gaps = 19/222 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM 67 +L S + H+I +P+ +I L + + +++I S + + Sbjct: 130 EELRQEFISDVSHEIQTPLTSISGFARALQNQSIDSDTRMKYLRIIEGESSRLSKLSENL 189 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 + L + + K ++++ + + + + + Sbjct: 190 LRLASLDSEKHPFEPKRYRLDRQLGTLILSCEPQWTGKSIELNADLDDVYVEADEDLLSQ 249 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----V 172 + +NL + P G++ ++++ N+ F +K NG + Sbjct: 250 VWINLISNSIKFTPEDGQIDVTLRQKGNQVEFRIKDNGIGIAADQHELIFDRFFKSDKAR 309 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ E H V L Sbjct: 310 SRKVGGSGLGLSLVKKIVEMHHGSVVVESELGHGSVFIVTLP 351 >gi|315180120|gb|ADT87034.1| sensor histidine kinase [Vibrio furnissii NCTC 11218] Length = 681 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I + EL+ ++ E + I Sbjct: 435 LNQTRDKLIVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGEDANRVTEEIDAI 494 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + + + + + + ++ + Sbjct: 495 MLQIDRIRNITRSLLQYSRHGGVQDEITWQHVNPIIDESMTLVKTGSKKRDIEFVTDLQA 554 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 + +IL+NL M A ++ GK+TI +D I ++ G Sbjct: 555 QSSVEVNRHQLLQILVNLQMNAIHAMNGKGKLTIRSEDWCEHGDVLGAIVHIEDEGCGI- 613 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ D + D + L + + + S L Sbjct: 614 KPEYLKRVFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIRVQSEWGKGSTFSVYLP 668 >gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 934 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 66/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + L + + H+I +P+ AI +LL E +E + +++ + Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETADIEERREYMKIVRENND 757 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + G VD + D+ + ++ + ++ Sbjct: 758 LLLQLISDILDLSKIEAGTFEFSHGDVDVNLLCEDLVRSMQMKTKENVKLVFEPNFSICH 817 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ +R +++ N A G + + F ++ G + Sbjct: 818 ITSDRNRIYQVISNFVNNAIKFTSE-GNIRVGYVLKDEGLEFYVQDTGIGIEKKQLPHIF 876 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +S + + + + + + + Sbjct: 877 ERFVKLDSFVHGTGLGLSICQSIVEQLGGHIGVDSEKGKGSRFWFTIP 924 >gi|228901738|ref|ZP_04065910.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL 4222] gi|228857870|gb|EEN02358.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL 4222] Length = 448 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELPK 448 >gi|228966149|ref|ZP_04127211.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis serovar sotto str. T04001] gi|228793518|gb|EEM41059.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis serovar sotto str. T04001] Length = 353 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 123 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 180 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 239 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 240 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 298 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 299 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELPK 353 >gi|167638126|ref|ZP_02396404.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|177651128|ref|ZP_02933959.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|254736781|ref|ZP_05194487.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|167513943|gb|EDR89311.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|172082954|gb|EDT68016.1| sensor histidine kinase [Bacillus anthracis str. A0174] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|118479812|ref|YP_896963.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196044095|ref|ZP_03111332.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|118419037|gb|ABK87456.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196025431|gb|EDX64101.1| sensor histidine kinase [Bacillus cereus 03BB108] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|75762154|ref|ZP_00742053.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898302|ref|YP_002446713.1| sensor histidine kinase [Bacillus cereus G9842] gi|74490357|gb|EAO53674.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542070|gb|ACK94464.1| sensor histidine kinase [Bacillus cereus G9842] Length = 458 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELPK 458 >gi|30264742|ref|NP_847119.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47530215|ref|YP_021564.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187560|ref|YP_030813.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|65322039|ref|ZP_00394998.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165869725|ref|ZP_02214383.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167634004|ref|ZP_02392327.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170685756|ref|ZP_02876979.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170705544|ref|ZP_02896008.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|190568318|ref|ZP_03021226.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227817461|ref|YP_002817470.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229604734|ref|YP_002868950.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254687480|ref|ZP_05151336.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254725043|ref|ZP_05186826.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254741818|ref|ZP_05199505.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254754584|ref|ZP_05206619.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254757416|ref|ZP_05209443.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|30259417|gb|AAP28605.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47505363|gb|AAT34039.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181487|gb|AAT56863.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|164714554|gb|EDR20073.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167530805|gb|EDR93507.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170129669|gb|EDS98532.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170670220|gb|EDT20960.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|190560574|gb|EDV14551.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227002759|gb|ACP12502.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229269142|gb|ACQ50779.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|254562006|ref|YP_003069101.1| Sensor protein, CheY-like domain [Methylobacterium extorquens DM4] gi|254269284|emb|CAX25250.1| putative Sensor protein, CheY-like domain [Methylobacterium extorquens DM4] Length = 577 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38 + + + + + +L L + I H+I +P+ I ++E Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392 Query: 39 LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 L+ + + + KF RL G G V+ + + +I+ + Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452 Query: 99 RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V ++G ++++N+ A ++ G +T++ ++ + G Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + L+ E + Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571 Query: 215 K 215 + Sbjct: 572 R 572 >gi|240139592|ref|YP_002964068.1| putative Sensor protein, CheY-like domain [Methylobacterium extorquens AM1] gi|240009565|gb|ACS40791.1| putative Sensor protein, CheY-like domain [Methylobacterium extorquens AM1] Length = 577 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38 + + + + + +L L + I H+I +P+ I ++E Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392 Query: 39 LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 L+ + + + KF RL G G V+ + + +I+ + Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452 Query: 99 RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V ++G ++++N+ A ++ G +T++ ++ + G Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + L+ E + Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571 Query: 215 K 215 + Sbjct: 572 R 572 >gi|229112136|ref|ZP_04241679.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15] gi|296505137|ref|YP_003666837.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|228671459|gb|EEL26760.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15] gi|296326189|gb|ADH09117.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHT 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARF-- 160 + +++ NL + + + K + N+ I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|229186930|ref|ZP_04314085.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1] gi|228596667|gb|EEK54332.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I ++ NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVTVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|170748606|ref|YP_001754866.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655128|gb|ACB24183.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 572 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQLIRL 55 + + + + + +L L + I H+I +P+ I ++E L + R Sbjct: 328 LTEAQSKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGELPDAAPEAAARA 387 Query: 56 SSMSAII-----------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + KF RL G V+ + + +I+ + Sbjct: 388 IDKARQRVGSMRMGLTRIQDLVLNLRKFSRLDEGERALVNVPEAIETVLALIQHKLGERI 447 Query: 99 RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V+ S+ G ++++N+ A ++P+GG + I+ Q + + + G Sbjct: 448 AVERSFAGRAEIHCTPALLNQVVMNILGNAADAMPQGGTIRITTQSNPELDEIRISDTGP 507 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + L E + Sbjct: 508 GIPDT-LREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLTVETAPGGGACFVIGIP 566 Query: 215 K 215 + Sbjct: 567 R 567 >gi|218531017|ref|YP_002421833.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523320|gb|ACK83905.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 577 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38 + + + + + +L L + I H+I +P+ I ++E Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392 Query: 39 LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 L+ + + + KF RL G G V+ + + +I+ + Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452 Query: 99 RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V ++G ++++N+ A ++ G +T++ ++ + G Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + L+ E + Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571 Query: 215 K 215 + Sbjct: 572 R 572 >gi|163852259|ref|YP_001640302.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163663864|gb|ABY31231.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 577 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38 + + + + + +L L + I H+I +P+ I ++E Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392 Query: 39 LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 L+ + + + KF RL G G V+ + + +I+ + Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452 Query: 99 RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V ++G ++++N+ A ++ G +T++ ++ + G Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + L+ E + Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571 Query: 215 K 215 + Sbjct: 572 R 572 >gi|30022741|ref|NP_834372.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|229129951|ref|ZP_04258917.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4] gi|29898300|gb|AAP11573.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] gi|228653642|gb|EEL09514.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4] Length = 484 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHT 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARF-- 160 + +++ NL + + + K + N+ I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|315280742|ref|ZP_07869555.1| sensor protein kinase WalK [Listeria marthii FSL S4-120] gi|313615610|gb|EFR88942.1| sensor protein kinase WalK [Listeria marthii FSL S4-120] Length = 610 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 600 >gi|260768445|ref|ZP_05877379.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] gi|260616475|gb|EEX41660.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] Length = 577 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 61/246 (24%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + + L + + H++ +P+ A+ ++LL + + Sbjct: 185 LQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDDSDAYQQ 244 Query: 50 MQLIRLSSMSAIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + ++ ++ + + I Sbjct: 245 DMLEQMENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDI 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + + E S +IL N+ A G V +K + Sbjct: 305 TFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTHHGFVDVSLVTARDR-LEIEVKDS 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G E+ + + + L + + Sbjct: 364 GIGI-DNERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSL 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTISIP 428 >gi|255029763|ref|ZP_05301714.1| hypothetical protein LmonL_13124 [Listeria monocytogenes LO28] Length = 383 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 156 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 215 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 216 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 275 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 276 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 335 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + ++ L Sbjct: 336 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 373 >gi|224502418|ref|ZP_03670725.1| hypothetical protein LmonFR_07844 [Listeria monocytogenes FSL R2-561] Length = 610 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 600 >gi|241666668|ref|YP_002984752.1| Osmosensitive K channel His kinase sensor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862125|gb|ACS59790.1| Osmosensitive K channel His kinase sensor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 902 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 51/233 (21%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 + L + L + I HD+ +P+ AI + L + +++ + S Sbjct: 659 RARLGAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + I + ++ + + Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGSALRRAAKILDGHKTEMSIPADLPM 778 Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P + I + + + G + Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEQSVIHIEGWADADNVVVQISDEGPGIPPTDLTRVF 838 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215 D + + V + L K Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTITAGNRTGRPGAVFTIRLPK 891 >gi|16802334|ref|NP_463819.1| hypothetical protein lmo0288 [Listeria monocytogenes EGD-e] gi|47096377|ref|ZP_00233972.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|224498863|ref|ZP_03667212.1| hypothetical protein LmonF1_03828 [Listeria monocytogenes Finland 1988] gi|254828748|ref|ZP_05233435.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165] gi|254831884|ref|ZP_05236539.1| hypothetical protein Lmon1_11045 [Listeria monocytogenes 10403S] gi|254900523|ref|ZP_05260447.1| hypothetical protein LmonJ_11934 [Listeria monocytogenes J0161] gi|254913526|ref|ZP_05263538.1| sensory box histidine kinase [Listeria monocytogenes J2818] gi|254937893|ref|ZP_05269590.1| sensory box histidine kinase [Listeria monocytogenes F6900] gi|255026055|ref|ZP_05298041.1| hypothetical protein LmonocytFSL_06310 [Listeria monocytogenes FSL J2-003] gi|284800587|ref|YP_003412452.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578] gi|284993773|ref|YP_003415541.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923] gi|16409653|emb|CAD00815.1| lmo0288 [Listeria monocytogenes EGD-e] gi|47015251|gb|EAL06189.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|258601155|gb|EEW14480.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165] gi|258610501|gb|EEW23109.1| sensory box histidine kinase [Listeria monocytogenes F6900] gi|284056149|gb|ADB67090.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578] gi|284059240|gb|ADB70179.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923] gi|293591536|gb|EFF99870.1| sensory box histidine kinase [Listeria monocytogenes J2818] Length = 610 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 600 >gi|323492685|ref|ZP_08097829.1| hypothetical protein VIBR0546_00405 [Vibrio brasiliensis LMG 20546] gi|323313060|gb|EGA66180.1| hypothetical protein VIBR0546_00405 [Vibrio brasiliensis LMG 20546] Length = 676 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ D+ E ++ I Sbjct: 431 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMQFELGDDSNRVKEEIEAI 490 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ +S Sbjct: 491 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIVEESITLVKTGTKKRGVEFETDLSA 550 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M ++ I +K +G Sbjct: 551 HTSVEVNRHQLLQILVNLQMNGIHAMQGKGLLSISTEDWIEGGKSVGAIVHVKDHGCGI- 609 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + D + + ++ L S L Sbjct: 610 KEENLKRIFSPFYTTKRDGTGLGLSVSQSILSQSGGELKVTSEWGKGSCFSIYLP 664 >gi|229182146|ref|ZP_04309433.1| hypothetical protein bcere0005_54620 [Bacillus cereus 172560W] gi|228601320|gb|EEK58854.1| hypothetical protein bcere0005_54620 [Bacillus cereus 172560W] Length = 801 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQSYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + ++++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|197120179|ref|YP_002140606.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197089539|gb|ACH40810.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 468 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLSSMSAIIRLKFM 67 L + I H+I +P+ I +++ L E + E + + + Sbjct: 248 GQLAAGIAHEIRNPLNYISLAIDHLKSEFLPSCPEKAQDLESIANNIKEEVRKANYMVLN 307 Query: 68 RLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + +G + ++ + + V + + + + Sbjct: 308 FMNYGRPLKLRLQRVCYPELVDKAMQLMKDRLDERGIEVVREIPEDLPPMLADPELMRNC 367 Query: 122 LFM---VAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 L + ++P GGK TI + + + G + ++ + Sbjct: 368 LCNFISNSTQAMPEGGKFTIGASLAPETGQFCLTFSDEGTGIEPQDL-EKVFQPYFTTKE 426 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ + S L Sbjct: 427 AGIGLGLAITERIVREHGGSIAVRSTKGEGTTFSVTLP 464 >gi|148655456|ref|YP_001275661.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148567566|gb|ABQ89711.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 391 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 71/235 (30%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 L +D L + + + H++ +P+ AI LEL + ++ + + +I Sbjct: 157 SARNAELQELDRLKSTFLATLSHELRTPLTAILGYLELFERRAFGLLTDVQGQAIGVIAR 216 Query: 56 SSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ L + D + + Q + ++ + T Sbjct: 217 NARILSRILNNLLYLQEVRSNEIRRVPVVIHDVVREIIAEMQPLAHAAHLELTSSIQPTA 276 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + L L A P G+++++V D + + ++ G E + Sbjct: 277 VYMGDPIGIGQALRALIDNAVKFTPAPGRISVTVIDEPSRVLVRVEDTGIGI-PAEAHEK 335 Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + ++ + + +L + Sbjct: 336 IFLPFYQIDDTLARPYAGVGLGLAIARHVIEAHGGQISVRSAVNAGSAFTVVLPR 390 >gi|47569986|ref|ZP_00240649.1| sensor histidine kinase [Bacillus cereus G9241] gi|47553334|gb|EAL11722.1| sensor histidine kinase [Bacillus cereus G9241] Length = 356 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRL----AFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKI 109 + + + L + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPEKVNYRLDQQLKQIVLNSEPLWDEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI + + + ++ +G + Sbjct: 234 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYETLVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 294 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 346 >gi|302388790|ref|YP_003824611.1| histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302199418|gb|ADL06988.1| histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 321 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 74/224 (33%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 K L ++ ++ L + H+I +P+ +I L+++D + E ++++ Sbjct: 95 KRRLSYLENLSVIGELAASAVHEIKNPLFSIRGFLQIIDNSFSDDDKRKEYIRIMISEID 154 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKID 110 ++ + + + ++ + I + +Q + Sbjct: 155 RLEGLVRDFLMLAKTRARSKGSVIVCELIRDIAELYKNRMEMQNIKFSLMAEDESVCIPG 214 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +NL A ++ GG + + V + + ++ G PE +I Sbjct: 215 NREQLEQVFINLIQNALEAMENGGNIEVVVYRKNEKLVIEVRDEGKGI-SPEIEKKIFTP 273 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ R+ + V Sbjct: 274 FFTNKKNGTGLGLFLSKKIVEEHMGRIYFRSTEGKGTVFFLEFP 317 >gi|256841138|ref|ZP_05546645.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256736981|gb|EEU50308.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 491 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 51/227 (22%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ +L L + + + H+I +P+ AI ++L + Q I + + Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316 Query: 62 IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 + + D + + K V++ Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPHISKNVRLILDDSPNVSL 376 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + IL L A +G F + GN + Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436 Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + S L Sbjct: 437 RFVQLNEFQPGTGLGLSICKGMVTAMGGTIWVNSEEGKGSTFSFKLP 483 >gi|239627745|ref|ZP_04670776.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239517891|gb|EEQ57757.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 506 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +N + L S I HD+ +PI AI +E + + E + + + Sbjct: 253 LRENADEKIQDDKENKELISNISHDLKTPITAIKGYVEGIMDGVASSPERLDKYIRTIYN 312 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102 + + + +D+ ++ D V Sbjct: 313 KANDMDRLIDELTFYSKIDTNKIPYAFTKINVAQYFRDCVEEVGVDMEARGIELGYFNYV 372 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + + +++ N+ + L + + I ++D + ++ NG Sbjct: 373 DEDIVVIADAEQMKRVINNIISNSVKYLDKKKGIINIRIKDVGDFIQVEIEDNGKGIAAK 432 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ R+ + + +L K Sbjct: 433 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVRKIIEDHGGRIWATSKEGIGTEIHFVLRK 491 >gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1088 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 67/241 (27%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 ++I +L + SR+ H++ +P+ AI +L++ + + + + S Sbjct: 694 EESIRQAREQAELASRAKTEFLSRMSHELRTPLNAILGFTQLMETETLGPSLAESVEHVS 753 Query: 58 MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ L + + I+ Sbjct: 754 RAGKHLLSLINEVLDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTLEPA 813 Query: 107 EKIDLS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +++ N+ A G+VT+S + ++ G Sbjct: 814 TAEMPPLQVLADRQRVHQVMYNILSNAVKYNRINGRVTVSYRVDGPRIRITIADTGRGI- 872 Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PEK +++ + I+ I + + L E L Sbjct: 873 EPEKLSRLFLPFERLGAESTDIEGSGIGLALSRGIVNALHGELHVESRVGEGSTFWLTLP 932 Query: 215 K 215 + Sbjct: 933 R 933 >gi|167629701|ref|YP_001680200.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592441|gb|ABZ84189.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 560 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 61/222 (27%), Gaps = 12/222 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + LV + + I H+I +P+ + L+L + + RL Sbjct: 328 ERELARLDRLHLVGQVAAGIGHEIRNPLTTVRGFLQLFGAKADLVQYDEYFRLMISELDR 387 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 K + + L + + + Sbjct: 388 ANDIITEFLSLAKTKPKQLRLQDLNEIITSLHPLLMAQAFKKDKQLVIDLGRIPLLALDE 447 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 E ++LLNL A ++ + G VTI + +++ G E ++I Sbjct: 448 HEIRQLLLNLVNNAMDAMKQRGTVTIRTYVDGERVLLAVRDEGEGI-AEEIQSKIGTPFF 506 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+ E Sbjct: 507 TTKAHGTGLGLATCYSIVERHRGRIDYETGP-KGTTFFIAFP 547 >gi|152972865|ref|YP_001338011.1| sensor protein ZraS [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957714|gb|ABR79744.1| sensor kinase of Zn/Pb responsive two-component regulatory system [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 464 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQ 51 ++ L + LVAL L + + H+I +P+ +I E G ++ Q Sbjct: 223 RRSRKQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPPGGESHQLAQ 282 Query: 52 LIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 ++ + L+ +R A +VD + Q++ + Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQTVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 ++LLNL++ A ++ R G + ++ ++ + + +G E Sbjct: 343 ELTTISADPDRLNQVLLNLYLNAMQAIGRDGVIRVTASEADRQRVKIVVTDSGKGMSDEE 402 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + V + ++ + E + + L Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453 >gi|121587829|ref|ZP_01677587.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 2740-80] gi|153820099|ref|ZP_01972766.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae NCTC 8457] gi|153822498|ref|ZP_01975165.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae B33] gi|229507980|ref|ZP_04397485.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae BX 330286] gi|229511783|ref|ZP_04401262.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae B33] gi|229518920|ref|ZP_04408363.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae RC9] gi|229607526|ref|YP_002878174.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae MJ-1236] gi|254849012|ref|ZP_05238362.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MO10] gi|255745317|ref|ZP_05419266.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholera CIRS 101] gi|262156041|ref|ZP_06029161.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae INDRE 91/1] gi|298498038|ref|ZP_07007845.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MAK 757] gi|121547930|gb|EAX58013.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 2740-80] gi|126509360|gb|EAZ71954.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae NCTC 8457] gi|126519972|gb|EAZ77195.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae B33] gi|229343609|gb|EEO08584.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae RC9] gi|229351748|gb|EEO16689.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae B33] gi|229355485|gb|EEO20406.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae BX 330286] gi|229370181|gb|ACQ60604.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae MJ-1236] gi|254844717|gb|EET23131.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MO10] gi|255737147|gb|EET92543.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholera CIRS 101] gi|262030219|gb|EEY48863.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae INDRE 91/1] gi|297542371|gb|EFH78421.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MAK 757] Length = 597 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|228921981|ref|ZP_04085292.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837589|gb|EEM82919.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 448 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448 >gi|227082055|ref|YP_002810606.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae M66-2] gi|227009943|gb|ACP06155.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae M66-2] Length = 597 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|30018834|ref|NP_830465.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|229126082|ref|ZP_04255104.1| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4] gi|229143377|ref|ZP_04271808.1| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24] gi|29894376|gb|AAP07666.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] gi|228640184|gb|EEK96583.1| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24] gi|228657404|gb|EEL13220.1| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4] Length = 463 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 15/219 (6%), Positives = 63/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + + Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPLEDLPHIFDRFYRVDKARTRS 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454 >gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 411 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 61/229 (26%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 +S+ L + + + H+I +P+ AI LL + E + + + + Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240 Query: 64 LKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGE 107 L+ + + D L + ++ + +++ + Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLKDKPEIKLNCEAGTDEWI 300 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +I+ NL A G ++E F + G E +I Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + E L Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408 >gi|332971338|gb|EGK10301.1| putative membrane protein [Desmospora sp. 8437] Length = 488 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIR 63 + ++ + + H+I +P+ +I L+++ E + +++ Sbjct: 267 DRLAMIGQMAAGTAHEIRNPLTSIRGFLQVIRHTLDERGDLKGQGYAEIMLREIDRINHL 326 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRE 114 L L + L + + I + + + Sbjct: 327 LGEFLLMGKPRNVKKRRVELDHSLRELLPIIENEAILHNIEVRYLPGLKDFPPVWADPEL 386 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 +++LNL ++ GG + + + + I ++ +G E I D + Sbjct: 387 LKQVVLNLCKNGIEAMGEGGLLQLRLSGDEERLILEVEDHGPGIPDSEINL-IFDPFYTT 445 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + S +L Sbjct: 446 KENGTGLGLAVSKQIIEDIGGEIQVSSGE-AGSIFSVILP 484 >gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 383 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 26/241 (10%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + + +++ L + S I HD +P+ +I LL+ + Sbjct: 137 LQQAKTQAIKALEQEQELNHLKSEFVSMISHDFRNPLTSIQGFAGLLECGSKLPSPEIIN 196 Query: 54 RLSSMSAIIRLKFMRLAFG------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 R S + L V + E + ++ + Q Sbjct: 197 RYVSKINNAVDHLLCLLDEILLIGSIESGKIQYHPVSVNLEEFCYELIDTLQYSLGNQHQ 256 Query: 102 VSWTGEKIDLSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++ + +IL NL A P G K+ + ++ + IF ++ G Sbjct: 257 ICFSCSDNTGAEMDIVLLQRILTNLLSNAIKYSPSGSKIDLVLECQNHVTIFQIRDQGMG 316 Query: 158 AR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F N I + V ++ + E ++ + L Sbjct: 317 IPIENQSHLFEAFYRCNNVGDIKGTGLGLAIVKKCVEVHQGNISLESQENLGTTFTVSLP 376 Query: 215 K 215 + Sbjct: 377 R 377 >gi|220915558|ref|YP_002490862.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953412|gb|ACL63796.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 300 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 61/225 (27%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 L +++ H++ +P+ +I +E L + + E ++++ + + Sbjct: 69 AKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQDPQRQREALEIVAEETARLSGLINR 128 Query: 67 MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + +++ + +R+ Sbjct: 129 LLDWARMESGRRVYELSRQPLGPVLDAALAAFEPQLLHHPVQLERDLPPRLPSVMADRSA 188 Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173 ++ LNL A ++ +S S ++ NG ++ Sbjct: 189 LVEAVLNLLNNAFKYTGPDKRIRLSAVASGPTVTIAVTDNGPGIPLRDQKHVFDKFYRAS 248 Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ + V + + ++ E L Sbjct: 249 DPLRRTVEGTGLGLAMVKHIVVGHGGKVSVESEPGCGATFRIALP 293 >gi|229083887|ref|ZP_04216194.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44] gi|228699408|gb|EEL52086.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44] Length = 424 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 16/222 (7%), Positives = 57/222 (25%), Gaps = 20/222 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + + H++ +P+ + ++ L + + + + + A ++ F Sbjct: 194 KERSEFLASVAHELRTPLTYVRGYADIALKDHTSPKQRQRYLSIIKDEADSITNLVQDLF 253 Query: 72 GYTGSVDSLIGLGD--------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + ++ + + + + + Sbjct: 254 LLAQMEQHNFSIETAKVQVEDFLSRIVTKVNIMYEIKHIRVSFTCPSSLSIALDEQRFEQ 313 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++N+ A+A ++ I V + S++ G + Sbjct: 314 VIINILNNAYAHSAEHSQIFIFVTVHQTHIEISIQDAGEGIPEKDIPHIFDRFYRVDKAR 373 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 374 SRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 415 >gi|256828132|ref|YP_003156860.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577308|gb|ACU88444.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 504 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 16/229 (6%) Query: 2 AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVM 50 +N+ L + L + + H++ P+ I +L ++ D ++ Sbjct: 261 KRNLERQLQHADRLAKIGQFAAGVAHELNEPLANILGFAQLAEQTPGLPAQAMKDLDSII 320 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106 + S + F R +D + D IE + + Sbjct: 321 KAALHSREVIKKLMIFGRQVPLRKTLIDLNQVIRDSLYFIEMSASRGKVEVRMNLAEGLP 380 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++++NL + ++P GG +TI K++ + +G Sbjct: 381 TIMADPQHLKQVIVNLVVNGIHAMPGGGVLTIETLSFKDDVYLLVSDSGVGMTPDVLRQI 440 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D + V + H + + E Sbjct: 441 FNPFFTTKDVDQGTGLGLAVVHGIVHAHGGVIEVESEPGRGTRFEITFP 489 >gi|89076061|ref|ZP_01162421.1| osmolarity sensor protein [Photobacterium sp. SKA34] gi|89048213|gb|EAR53795.1| osmolarity sensor protein [Photobacterium sp. SKA34] Length = 444 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 61/213 (28%), Gaps = 8/213 (3%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKF 66 + ALL + + HD+ +P+ I + E++ E + +++ + Sbjct: 226 QLEEDRALLMAGVSHDLRTPLTRIRLATEMMSPEDSYLAESMITDTEECNAIISQFMDYL 285 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 +D L D+ + + G + + + NL + A Sbjct: 286 KSTKKQEEEEIDLNTLLIDVAHTEGSYGKTIDQQLGEIPGTVSANAVALKRAVANLVVNA 345 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDI 181 K++ + F ++ +G + S + + Sbjct: 346 QRYGKGWVKISSGASAYRKSVWFCVEDDGPGIAPDQVTKMFQPLTRGDAARGSEAEGTGL 405 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ +L + + + L Sbjct: 406 GLAIVKRIVDQHDGVILVRNRSEGGLRVEVTLP 438 >gi|229116715|ref|ZP_04246099.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3] gi|228666547|gb|EEL22005.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3] Length = 448 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG V V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGM-EKEGMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 448 >gi|254286859|ref|ZP_04961811.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae AM-19226] gi|150423009|gb|EDN14958.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae AM-19226] Length = 597 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|15641927|ref|NP_231559.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9656461|gb|AAF95073.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 597 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|329930198|ref|ZP_08283811.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328935220|gb|EGG31701.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 764 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + + ++ V L + + H+I +P+ + L+L + + + I Sbjct: 535 EELLRRSEKLNTVGQLAAGVAHEIRNPLTTLRGFLQLQQQTHQANPDHIDLMLSELDRIN 594 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSR 113 L +I K + F + + ++ ++ + Sbjct: 595 LIVSEFLILAKPQAINFQERDVGIIMGDVISFLDSQAHLYGIEFKLDFIEEPTFVHCEEN 654 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ +NL A ++P GG + I + + ++ ++ G + + + + Sbjct: 655 QLKQVFINLLKNAIEAMPEGGNIWIRLTRPQVDQIQIDIRDEGQGI-PEDMMPHLGEPFI 713 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E +S +L Sbjct: 714 TNKETGTGLGLMVSQRIIQGHRGTMEIESEVGVGTRVSIVLP 755 >gi|324324689|gb|ADY19949.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 463 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHIRISVIEENKRITITIEDEGEGIPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454 >gi|301054746|ref|YP_003792957.1| histidine kinase [Bacillus anthracis CI] gi|300376915|gb|ADK05819.1| histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|299782693|gb|ADJ40691.1| Sensor protein [Lactobacillus fermentum CECT 5716] Length = 619 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 66/226 (29%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ + +E L + I D + + + + + L+ Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELAPRFLGVVSDETERMIRMINDLLSLSR 439 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113 +G+ + +I ++ + + + + Sbjct: 440 MDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSKKKYTIVRYFTKKDLWVEIDTD 499 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605 >gi|260662553|ref|ZP_05863448.1| two-component sensor histidine kinase [Lactobacillus fermentum 28-3-CHN] gi|260553244|gb|EEX26187.1| two-component sensor histidine kinase [Lactobacillus fermentum 28-3-CHN] Length = 619 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 66/226 (29%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++ + +E L + I D + + + + + L+ Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELAPRFLGVVSDETERMIRMINDLLSLSR 439 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113 +G+ + +I ++ + + + + Sbjct: 440 MDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYLTKKDLWVEIDTD 499 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ L Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605 >gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2] gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2] Length = 613 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 69/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++ + +E L E +D + L R Sbjct: 383 FVSNVSHELRTPLTSMRSYIEALSEGAWQDPEIAPNFLKVTLDETDRMIRMINDLLSLSR 442 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 + G + + + D ++ ++ +T ++ + + ++ Sbjct: 443 MDSGNAQLQLEYINFNELVSFVLDRFDMMVTNENKKYVIRREFTKRELWVEVDTDKMIQV 502 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T+ + ++ N + S+ G + F + + Sbjct: 503 IDNIMNNAIKYSPDGGVITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARA 562 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E ++ +L Sbjct: 563 RQQGGTGLGLAISREVIKSHGGAIWAESRENRGSTFYIMLP 603 >gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 657 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + L + + + + H++ +P+ I +LL + + + + Sbjct: 275 EEERIQLLEKAEAANRIKDEFLAIVSHELRTPLNPILGWSKLLRTRKLNQDKVDQALETI 334 Query: 58 MSAIIRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + V + + ++ +++ Q+ Sbjct: 335 ERNASLQAQLIDDLLDVSRILRGKLNLQTLRVDLVRVIQAAIETMRLAAAAKSIEIDTQL 394 Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 T + +++ NL A P+GG++T+ +Q+ ++ + G Sbjct: 395 DSTVGFVSGDPNRLQQVVWNLLSNAVKFTPKGGRITVRLQEIDSQAQIQVSDTGQGISPD 454 Query: 162 E-----KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + + + ++ + V L + R+ E + L Sbjct: 455 FFPYIFDYFRQENSTTTRSVGGLGLGLAIVRHLIELHGGRIEAESEGIGQGATFTVTLP 513 >gi|239637988|ref|ZP_04678949.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus warneri L37603] gi|239596551|gb|EEQ79087.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus warneri L37603] Length = 564 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 NL ++ L + + H++ +PI +I E L ++ + + +I S Sbjct: 334 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEESLNMFLNIILKESNRIE 393 Query: 62 IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y + D Q + ++ Sbjct: 394 SLVMDLLDLSHIEQQNEITTSYMNLSELAYTTIDNLQNQAQNKNITIESKIERDVIFKAN 453 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + A+++ NL A KV +SV ++ G E F + Sbjct: 454 ENKIAQVITNLLSNAINYSTNDNKVIVSVYREGKRVNLEIQDFGIGISAEEQKHIFERFY 513 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + Sbjct: 514 RVDKARSRDSGGTGLGLSITKHIVESHNGRISVISRLNEGSTFKVT 559 >gi|134300132|ref|YP_001113628.1| nitrogen-specific signal transduction histidine kinase NtrB [Desulfotomaculum reducens MI-1] gi|134052832|gb|ABO50803.1| GAF sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 782 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 12/219 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L +++V + + I H++ +P+ + L++L + ++ + L Sbjct: 552 EKEMIRLDRLNMVGEMAAGIAHEVRNPLTTVRGFLQMLGKKNDNGKLQEYYALMIEELDR 611 Query: 63 RLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LS 112 R D + + +I V Sbjct: 612 ANTIISEFLSTARNKPDKLELEDLNTIIDTLFPLIAADAMNSDCNVVRELTNISPILLNQ 671 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +E +++LNL + ++ GG +TI E I S+ G E ++ Sbjct: 672 KEIRQLILNLAHNSLEAMTPGGTLTIKTFMVGEEIILSMADTGKGI-ETEILDKLGTPFF 730 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + + + + Sbjct: 731 TTKENGTGLGLAVCYGIVRRHHASIEIDTSP-KGTTFYI 768 >gi|217977986|ref|YP_002362133.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503362|gb|ACK50771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 630 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSL---ELLDEVGIEDE 48 + L + + S + H++ P+ AI + L L + + Sbjct: 378 RQETQQRLQDLQSALVHISRFTAMGEMASTLAHELNQPLTAIASYLNGCRRLLDADRGGD 437 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106 + ++R A + + + + I + + Sbjct: 438 KVAMVRDGVERAAAQALRAGQIIKRMRQFVARGESERQVESLPKLIEEASALALVGIKET 497 Query: 107 -------------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFS 150 + + +++LNL A ++ + +++ + + S Sbjct: 498 GVRVGFAFDPRVAFVLVDKIQIEQVILNLMRNAIEAMLDCARRDLTIATAELAGDMVEVS 557 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + G P+ Q+ V + D I + + RL E V Sbjct: 558 VADTGPGI-SPDIAAQLFQPFVTTKPDGLGIGLSISRTIIEAHGGRLWVEPNPGGGTVFR 616 Query: 211 ALLE 214 L+ Sbjct: 617 LTLK 620 >gi|169828805|ref|YP_001698963.1| putative sensor-like histidine kinase yclK [Lysinibacillus sphaericus C3-41] gi|168993293|gb|ACA40833.1| Hypothetical sensor-like histidine kinase yclK [Lysinibacillus sphaericus C3-41] Length = 443 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSS 57 + + +L ++ + S + H++ SP+ +I L +V + + + +I + Sbjct: 208 EEMASDLQQLEQMRKEFVSNVSHEVQSPLTSISGYALALKQVDLTIEEKNRYLDIIMAEA 267 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + I + ++A + + Sbjct: 268 QRMSKMSDSLLKLSLLESKAPPMQLVSLSLDEQIRRVIVAIQPQWMAKNIHFNLQLQSVY 327 Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ ++ NL + G + IS+ + + + G ++ Sbjct: 328 VMADYDQLNQVWTNLLTNSIKFSKDGDTIKISMSQEAHHVLVRITDTGIGISQEDQKRVF 387 Query: 168 VDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K + E + L Sbjct: 388 ERFFKADRSHSRKYEGSGMGLAIVKQIVSLHKGDVRVESELEQGTTFIVTLP 439 >gi|121535086|ref|ZP_01666903.1| multi-sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306336|gb|EAX47261.1| multi-sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 593 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 63/223 (28%), Gaps = 24/223 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIRLKFMRLA 70 A + H++ +P+ AI L + I + + +I + + + Sbjct: 366 AEFVANASHELKTPLTAIKGFAATLLDGAIREPALATKFVTIIHDEAERMNRLVDDLLQL 425 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------------IDLSRERA 116 + + + AV + + W ++ + Sbjct: 426 ASLDARETGQQARLEPTDIYKVAAAVVEELSAQWRAKRLSVLLDAPARPLAVMANPDWLR 485 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GN 171 ++L+NL + P GGK+ + + ++ + ++ +G + F + Sbjct: 486 QVLVNLLDNSIKYTPEGGKILVKWWQASDKAVVMVQDSGIGIPAKDLPFIFDRFYRVDRA 545 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ D + L Sbjct: 546 RSRRAGGTGLGLAIVKHIIETLGGKIDVVSEPDAGTTFTFTLP 588 >gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 413 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 58/235 (24%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + H++ +P+ I EL+ + +DE + + S+ Sbjct: 172 LDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAADDETRENADIIEKSS 231 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + I + +V + Sbjct: 232 RHLLELVNSILDIAKIEAGAMTLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQVSDNC 291 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +I+ NL A +G + IF + G Sbjct: 292 PETIRADPLRLRQIIHNLLSNAVKFTEKGEVSLSVELEPG-HLIFRVSDTGAGIPEGMLH 350 Query: 165 T-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + VD + + + L + + V L Sbjct: 351 AIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLP 405 >gi|295397797|ref|ZP_06807864.1| Sensory transduction histidine kinase [Aerococcus viridans ATCC 11563] gi|294973966|gb|EFG49726.1| Sensory transduction histidine kinase [Aerococcus viridans ATCC 11563] Length = 469 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 62/222 (27%), Gaps = 17/222 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 ++ L S I H+I +P+ + ++E + + + +E + + + Sbjct: 241 RQQEIRNRLSSDIAHEIRTPLTTLKGNIEAMIDGVWEVSEERLYHCYEEVNRIARLIGQI 300 Query: 68 RLAFGY-TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---------SRERAK 117 + D+ ++ + + + + E + + Sbjct: 301 DRINEIESHESQLQKSSFDLLELTQQVAGTFQALLIEKGIECAINGEAVLISADRDKIHQ 360 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNV 172 ++ NL A P GG + + V F + G E F + + Sbjct: 361 VVTNLLYNAIKFTPSGGHIDLQVSQISGVASFKITDTGQGIPPNEINQVFERFYMAEPSR 420 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V + + + + E L Sbjct: 421 NRKLGGQGIGLSIVKGIVNAHHGTISVESTYGKGTTFVVSLP 462 >gi|163938573|ref|YP_001643457.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163860770|gb|ABY41829.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 456 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 15/219 (6%), Positives = 50/219 (22%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 68 RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++ + L V+ + + + +++ Sbjct: 296 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 454 >gi|163846453|ref|YP_001634497.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524228|ref|YP_002568699.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667742|gb|ABY34108.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448107|gb|ACM52373.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 466 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+ + L + I H++ +P+ I LE + + + E ++ + Sbjct: 216 MAEALQQADQQRR---QLTADIAHELRTPLSIIKGRLEGIQDGVYEADAEQIEALLTEVA 272 Query: 59 SAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + + + Sbjct: 273 LLERLINDLHLLALADAGQLPLYREVVSPQMLVNEAIRSFTPAANERNVRLSATIDDNLP 332 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + + A++L NL A P GG+V +S ++ F ++ G + Sbjct: 333 DIEVDPQRIAQVLGNLIGNALRHTPAGGEVIVSAHRDESGIRFEVRDTGAGIDPADLPYI 392 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + L + ++ +S L Sbjct: 393 FDRFYKADRARSRSSGGAGLGLAIARRLVEAHGGQIWATSALQQGTTVSFRLP 445 >gi|209546222|ref|YP_002278112.1| osmosensitive K+ channel signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539079|gb|ACI59012.1| osmosensitive K+ channel signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 902 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 52/233 (22%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 + L + L + I HD+ +P+ AI + L + +++ + S Sbjct: 659 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + I + ++ + + Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGSALRRAAKMLERHRTEMSIPADLPM 778 Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P G + I + + + G + Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEGSIIHIGGWADADNVVLQVSDEGPGIPPADLTRVF 838 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215 D + + V + L K Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRTGRSGAVFTIRLPK 891 >gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase [Fervidobacterium nodosum Rt17-B1] gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase [Fervidobacterium nodosum Rt17-B1] Length = 422 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 69/229 (30%), Gaps = 27/229 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFM 67 L S + H++ +P+ +IH E L + + ++ + +I S + + Sbjct: 185 KLRREFISNVSHELRTPLTSIHGYAEALLDDDLSNKELVRKFLGVIESESARMTRLINDL 244 Query: 68 -----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + F + + I + + + V+ + Sbjct: 245 LDLEKLESGDAKFNFSDVNMCKVIERVVTILEPLAEDYGVELYTKCECKSTVYGDFDRLV 304 Query: 117 KILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++LNL A KV + +++ +F ++ G + ++ + Sbjct: 305 QLVLNLVDNAVKYTSIKETGEKKVFVKCYGKEDKLVFEVQDTGPGI-PEDAQKRLFERFY 363 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V ++A ++ + E +K Sbjct: 364 RVDKARSRKVGGTGLGLSIVKMIADKHNATISFESKVGEGTTFRVYFKK 412 >gi|56963514|ref|YP_175245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56909757|dbj|BAD64284.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 321 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 10/221 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRLS 56 K +M++V+ L + + H++ +P+ I ++L L E I ++L R+ Sbjct: 81 KQAHKRKEAMEVVSRLSAGVAHELRNPLTTIKGFIQLYSEVGELRESQINIMNIELERIE 140 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ L S+ L + + V ++ +S + + Sbjct: 141 NIINDYVLLAEEPPARENESIQMAAFLQSLLKKNKVKRLTDGHPIKLNISEEATVLGSRK 200 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 E + NL A + + V I++ + G+ E+ I Sbjct: 201 ELFLLFYNLLENAIDASVKHSPVHITMYAEGPNVCVEITDFGSGM-PAERLNYIGQPFYS 259 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E D + +L Sbjct: 260 TKEKGTGLGLMICYRVVETHGGLIDIESKDKRGTNVKVILP 300 >gi|51246574|ref|YP_066458.1| Ntr two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50877611|emb|CAG37451.1| related to two-component system sensor histidine kinase (Ntr family) [Desulfotalea psychrophila LSv54] Length = 557 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 75/237 (31%), Gaps = 27/237 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + K + + L A+ + + I H+ +P+ AI S ++L+E G +L Sbjct: 319 LEKQLR---QAEKLAAIGTMSASIAHEFRNPLTAISGSAQILEEDLINQAGETTISYELC 375 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------ 107 + + L+ + + S +++ +++ +A ++ + Sbjct: 376 AIILRESDRLLETISNFLIFAKPEHSEYNWFSLKKCVKEILASNRTNPLWPESCLIEVKI 435 Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGK--------VTISVQDSKNENIFSLKINGNL 157 ++DL ++ +I L + +L + + ++ NG Sbjct: 436 EQQLDLWADKNQIQTTLNHLLDNALCFCPRGKEKIRIEAHEYSIGAGKFVQINIGDNGTG 495 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + D + V +K R+ L Sbjct: 496 VASAE-MRKIFEPFYTTRADGTGLGLSIVHQYVSAHKGRVAVGKSPLGGAEFQVSLP 551 >gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.] Length = 1155 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----------LLDEVGIEDEVMQ 51 + L I H+ +PI I LE + Sbjct: 502 REQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLESAVGTGEGLSYAQSAIALCNSRR 561 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108 L+RL + ++ D + + I + + ++ Sbjct: 562 LLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELDECPTV 621 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 + K++ NL A P GG +++ +Q + I ++ G + Sbjct: 622 YIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIPHLFE 681 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +G+ + + + V L + R+ + + + L Sbjct: 682 RFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVDSVYGKGTTFTLWL 731 >gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 605 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 KN +L + A + + H+I +P+ AI EL+ ++E M Sbjct: 367 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 426 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99 + M+ + ++ + + + + + ++ Sbjct: 427 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 486 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + S +++ NL A + G ++ F ++ G Sbjct: 487 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYVRDTGIGID 546 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + + S +L Sbjct: 547 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 602 >gi|260584311|ref|ZP_05852058.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC 700633] gi|260157829|gb|EEW92898.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC 700633] Length = 616 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 71/224 (31%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ +I + E L + E++ +++I + + + + Sbjct: 382 FVSNVSHELRTPLTSIKSYTEALVDGAWENKEIAPGFLKVIETETDRMMRMITDLLNLSR 441 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 V ++ ++ E + + R+ T + + ++ Sbjct: 442 MDQNRLGLEKEFINMNELVLHIVNRFEMVLQSEPYREKNYRILTDITQRDLWVELDQDKI 501 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++L N+ A P GG++ + + ++ + I S+ G + Sbjct: 502 TQVLDNIINNAIKYSPDGGRIIVRLMETHTDIIVSVSDEGLGIARKDIPHLFDRFYRVDK 561 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ I++ L Sbjct: 562 ARSRAMGGSGLGLAIAQEVVQLHGGKIWVNSIENKGSTFFVSLP 605 >gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 622 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 KN +L + A + + H+I +P+ AI EL+ ++E M Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99 + M+ + ++ + + + + + ++ Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + S +++ NL A + G ++ F ++ G Sbjct: 504 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYVRDTGIGID 563 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + + S +L Sbjct: 564 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619 >gi|229030925|ref|ZP_04186944.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271] gi|228730419|gb|EEL81380.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271] Length = 448 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEEMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ + S+ NG E+ + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGM-EREEMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELPK 448 >gi|170287881|ref|YP_001738119.1| histidine kinase [Thermotoga sp. RQ2] gi|281411517|ref|YP_003345596.1| histidine kinase [Thermotoga naphthophila RKU-10] gi|170175384|gb|ACB08436.1| histidine kinase [Thermotoga sp. RQ2] gi|281372620|gb|ADA66182.1| histidine kinase [Thermotoga naphthophila RKU-10] Length = 492 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 57/240 (23%), Gaps = 31/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMS 59 + M + I H++ +P+ AI E L+E+ + L + S Sbjct: 245 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETVYNSLEELDLSTLKEFLEVIIDQS 302 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSW 104 + L SL + + + + + V Sbjct: 303 NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 362 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161 E ++LLNL + + + ++ NG Sbjct: 363 PVEAYIDPTRIRQVLLNLLDNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 421 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + R+ E + K Sbjct: 422 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 481 >gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 622 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 KN +L + A + + H+I +P+ AI EL+ ++E M Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99 + M+ + ++ + + + + + ++ Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + S +++ NL A + G ++ F ++ G Sbjct: 504 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYVRDTGIGID 563 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + + S +L Sbjct: 564 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619 >gi|116620765|ref|YP_822921.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223927|gb|ABJ82636.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 981 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 71/230 (30%), Gaps = 21/230 (9%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIR 54 + + L + LL + + H++ +P+ I ++L + ED + Sbjct: 739 EQRLVQADKLTSIGLLAAGVAHEVNTPLAVISTYAQMLAKQVAEDSQKSLILEKIAKQTF 798 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KID 110 +S L F R + G+V+ + + ++E + + Sbjct: 799 RASEIVNSLLNFSRTSTTSFGAVNVNKVVQETLSLLEHQLTKSGIQIKTEMDPSLPAVQG 858 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ LNL + A ++ GG ++ + + G+ PE + Sbjct: 859 NAGKLQQVFLNLILNARDAMTAGGTTGGTIELRSWAEGSGARIEVSDTGHGI-APENLHR 917 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + E+ + D L Sbjct: 918 IYDPFFTTKAARKGTGLGLSVTYGIIQEHGGSIEVFNRRDGGATFRVELP 967 >gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22] gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22] Length = 513 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 276 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 333 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ F ++ + + + K + Sbjct: 334 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISEIEIKSLLPDE 393 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ N A + + ++ G+ Sbjct: 394 DVYINTDITRLKQVICNFINNARKFTQKGYIHFGYTLDNRNADSVQIFVEDTGSGIPQEC 453 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + L Sbjct: 454 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 506 >gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22] gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22] gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 499 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ F ++ + + + K + Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISEIEIKSLLPDE 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ N A + + ++ G+ Sbjct: 380 DVYINTDITRLKQVICNFINNARKFTQKGYIHFGYTLDNRNADSVQIFVEDTGSGIPQEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + L Sbjct: 440 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 492 >gi|229019900|ref|ZP_04176697.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273] gi|228741390|gb|EEL91593.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273] Length = 484 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LRESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + V + + ++ +S G ++ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVHLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + L+K Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478 >gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii DSM 18315] gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii DSM 18315] Length = 475 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 70/230 (30%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + L + L + + H+I +P+ AI LL D+ + + +++I+ ++ Sbjct: 250 QREKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSTLLVDTDDPEEKKQFVEIIQKNNE 307 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + VD ++ + + + + V+ Sbjct: 308 LLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMRIKVPAEVALCVAPDLPSYI 367 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ +I+ N A +G V FS+ G+ PE + Sbjct: 368 MRCDKVRLTQIISNFINNAIKHTSKGTIVLGYEVRQDE-IEFSVTDTGDGM-SPEVQQHV 425 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + + ++ E + L + Sbjct: 426 FDRFYKGNSFKQGTGLGLSICKSIIEQVGGKIGVESEEGKGSRFWFTLLR 475 >gi|206969233|ref|ZP_03230188.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cereus AH1134] gi|206736274|gb|EDZ53432.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cereus AH1134] Length = 801 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQSYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|108757728|ref|YP_632419.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108461608|gb|ABF86793.1| sensor histidine kinase / response regulator [Myxococcus xanthus DK 1622] Length = 368 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 + + + L A+ + + + H+I +P+ A L +L+ E Sbjct: 133 KRELARRAQVTEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRLRRLPDGQQAPLLEP 192 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSW 104 + L+R L+ + + + ++ + + + ++V+ Sbjct: 193 LLLVRDEIRRLDHILEDFLQFARPREFRPASVDVNEMLRRVVDLLSGQAASRKVSLEVTP 252 Query: 105 TGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L+NL + A + P GG VT+S ++ +G Sbjct: 253 REAPVPSVAGEEERLRQVLINLCLNALEATPAGGTVTLSAGHEGGRVWLTVDDSGPGV-P 311 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + ++ L + + Sbjct: 312 QEARDRIFEPFFTTKAQGSGLGLSIVHAIVTQHGGSLEVDTAPGGGARFILRMP 365 >gi|163847613|ref|YP_001635657.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525469|ref|YP_002569940.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus sp. Y-400-fl] gi|163668902|gb|ABY35268.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449348|gb|ACM53614.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus sp. Y-400-fl] Length = 666 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 62/251 (24%), Gaps = 39/251 (15%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 + + L + L A+ L + + H+I +P+ A+ +++ LL + E L Sbjct: 414 RQRLARELAQAEKLAAIGRLATAMAHEINNPLQALSSTVHLLQHSDLSPERRDLYLTKAA 473 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106 L R VD + D+ + + S Sbjct: 474 AELDGLIQRVQRILDISRPNLDGRRPVDLNQVVIDVIATYRQTLIARNIRYIGELTSTLP 533 Query: 107 EKIDLSRERAKILLNLFMVAHASLP-----------------------RGGKVTISVQDS 143 + ++ L A ++P S Sbjct: 534 WVTAVISHLKQVCQTLVQNAIEAMPEGGTLRIRTYLRPPDGEPDRASFWRAGGGSRQFPS 593 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 + + + G E +I + + D I + + L Sbjct: 594 EQAVVLEISDTGVGIAQEEVP-KIFEPFYSTRFDGLGIGLSLCYSIVDFHGGELWVRSQP 652 Query: 204 DHNVVLSALLE 214 + +L Sbjct: 653 EQGTTFRVILP 663 >gi|229131594|ref|ZP_04260476.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196] gi|228651820|gb|EEL07775.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196] Length = 421 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 53/219 (24%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQL-------IRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ L E ++ ++ + Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIALKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260 Query: 68 RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++ + L V+ + + + +++ Sbjct: 261 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 320 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +K G + Sbjct: 321 NILNNAYRHSKEHSHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKARSRA 380 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419 >gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 587 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 69/226 (30%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ +I+ +E L ++ + + +I + + + Sbjct: 359 EKMRSDFVTNVSHELKTPLTSINGFVETLKSGAVEDRDVAMRFLDIIEIETDRLKRLIND 418 Query: 67 ---------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLSRE 114 M F S + ++ +I + + + Sbjct: 419 ILTLSEIESMETKFIVNEIFPSDTLMEVVDFIIPLADSKEIELFTDIDSALPSIYGNRDW 478 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +I++NL + P GGKV ++ N + +K G + ++ + Sbjct: 479 FKQIVINLLDNSIKYTPIGGKVELTAYTKDNNIVLHVKDTGIGIPKKDLP-RLFERFYRV 537 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + + Sbjct: 538 DKARSRKVGGTGLGLAIVKYIVLSFNGKINVDSEEGNGTEFIVTIP 583 >gi|153826363|ref|ZP_01979030.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-2] gi|149739841|gb|EDM54032.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-2] Length = 597 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLASNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|153007202|ref|YP_001381527.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030775|gb|ABS28543.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 514 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----L 55 + + L +M+ L I HD+ +P+ AI+N LL + ++ Sbjct: 272 LTFSDETALHAMEQARDDLVRMISHDLRTPLNAIYNQAHLLRRYPNDAARVEARAAAVLK 331 Query: 56 SSMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S ++ + VD + ++ + I VD+ V Sbjct: 332 SCERMSAMIQDLVEATLLEDGQLQISPEPVDLAAAVPELLERFHGAIDVDRVRLVVHPDL 391 Query: 108 KID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 + +I++NL A P G+V + + + + G + Sbjct: 392 PRALADPQRLERIVVNLLTNALKYSPPQGEVVLELAPAPEGVAIVVTDRGVGIAPEDVPH 451 Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + Y L + R+ +L Sbjct: 452 VFDRFFRARGARQPEGLGLGLYITRHLVQAHGGRIEVSSRLGQGSTFRVVLP 503 >gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] Length = 939 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI LL E +E Q I + + Sbjct: 712 AKEKAEAADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLGETENVEERKQYIAIVEENND 769 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++D + DI + + + + + Sbjct: 770 LLLQLISDILDLSKIEAGTFDFTKRALDVNLLCEDIVRTMRMKVKPGVELLFDSHLPECQ 829 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R ++L N A G +N F + G ++ Sbjct: 830 IVSDRNRLNQVLANFVNNAVKFTSAGSIRVGYEPLDENRLRFYVADTGIGIEPEKQVQVF 889 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + L Sbjct: 890 DRFVKLDTFVPGTGLGLSISKSIIEQLGGTIGVDSKVGEGSCFWFTLP 937 >gi|315641356|ref|ZP_07896432.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952] gi|315482929|gb|EFU73449.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952] Length = 613 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 69/221 (31%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ ++H+ LE L + DE + L R Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWRDEEIAPDFLKVTLDETDRMIRMINDLLNLSR 442 Query: 69 LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 + G + + + + ++ ++ +T + + + ++ Sbjct: 443 MDGGNAQLQKEYVNFNELVHFVLNRFDMMVTGKEKRYVIRRDFTQRDLWVEVDADRMIQV 502 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173 + N+ A P GG +T+S+ ++ N + S++ G + Sbjct: 503 IDNIMNNAIKYSPDGGVITVSLSETHNHILLSIRDQGMGIPKVDLAKIFTRFYRVDKARA 562 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +K + E +++ L Sbjct: 563 RKQGGTGLGLAISREVIKAHKGSIWAESKENYGSTFYISLP 603 >gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 400 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI +L+ +++ ++I +S + Sbjct: 178 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 237 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ +D + L V Sbjct: 238 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFWHKTQNGVKLILDDVDTDMYTSGDWNRI 297 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 +I+ NL A P+G + ++ ++ F +K +G T Sbjct: 298 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD 356 Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +L + R+ + L Sbjct: 357 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 396 >gi|159899975|ref|YP_001546222.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893014|gb|ABX06094.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 958 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 77/228 (33%), Gaps = 23/228 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAI 61 L + + S + HD+ SP+ AI +L+ + ++ + +Q + ++ + Sbjct: 730 ELDQIK--SRFVSMVSHDLKSPLTAIQGYAQLVADGHMGTVNEMQRDALQAVVRNTGAMT 787 Query: 62 IRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + ++ T L + D ++ + + ++ + + Sbjct: 788 ALISDLLDLGKIEAGIGISPQETDLAVVLREVIDELKLRAKMGQISVQPEIPPSLPLVAD 847 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIV 168 ++ N+ A P GG+V I + + ++ +G P F + Sbjct: 848 PSRMRQVFTNILSNAIKYTPSGGQVQIRANNGDAKMHVQIQDSGLGIPEDSLPHIFERFY 907 Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++S I+ + + E+ + + + + L Sbjct: 908 RVKRDIDSPIEGTGLGLAITKSIVDEHGGTIEVQSVIGEGTTFNVYLP 955 >gi|324991493|gb|EGC23426.1| sensor histidine kinase VicK [Streptococcus sanguinis SK353] Length = 449 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + + V + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270 Query: 69 LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 + + L +++ + + I + + + Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPILVEIDTNKLTQ 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 ++ N+ A P GG +T+S++ + + I S+ G + F + + Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432 >gi|324328565|gb|ADY23825.1| Two component system histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 484 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|304318073|ref|YP_003853218.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779575|gb|ADL70134.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 565 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 22/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +P+ I + E L + + + +I +K + L Sbjct: 348 FVANVSHELRTPLTTIKSYTETLLNDGVDEEYRNRFLSIIDKEVDRMTRLVKDLLLLSKM 407 Query: 74 TGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + L I+ + + ++LLN+ Sbjct: 408 DSNGKLNLEETNLNEFIENILYKIKIEAQKKNQKLTFCAGEEKRNINIDRDKMEQVLLNV 467 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176 A GG V + + + ++ NG + +I + + Sbjct: 468 VSNAIKYTNLGGYVRVFTKYDDDYAYITISDNGIGIPKKDLP-RIFERFYRVDKGRSREL 526 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E ++ L+ Sbjct: 527 GGTGLGLAIAKEIVTAHGGEINIESEVGIGTIVYIKLK 564 >gi|289432510|ref|YP_003462383.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. GT] gi|288946230|gb|ADC73927.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. GT] Length = 852 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 17/226 (7%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62 + + L +L L + + H++ +P+ ++ EL+ E + +++ Q I++ S A Sbjct: 622 AQLMITDRLASLGELSAGLAHELNNPLTSVLGFSELIQEKILPEDLRQDIQIISQEAQRA 681 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER 115 L F R VD + + + + ++ + ++ + Sbjct: 682 AEIIRNLLTFARRHEPSKDWVDMNQIIHKVLAICNYGQKVHNIQLITNLDPNLPEIKADY 741 Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ L + + + IS + + S++ +G Sbjct: 742 FQMQQVLLNIVINAEYFMTQSHGEGTIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDP 801 Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +L E + + Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIEIP 847 >gi|283787324|ref|YP_003367189.1| two-component system sensor kinase [Citrobacter rodentium ICC168] gi|282950778|emb|CBG90454.1| two-component system sensor kinase [Citrobacter rodentium ICC168] Length = 467 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSM 58 LVAL L + + H+I +P+ +I E G ++ Q++ + Sbjct: 234 QDEMNRKEKLVALGHLAAGVAHEIRNPLSSIKGLARYFAERAPAEGEAHQLAQVMAKEAD 293 Query: 59 SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKID 110 L+ ++ A VD + Q++ K + Sbjct: 294 RLNRVVSELLELVKPARLSLQPVDLNALIAHSLQLVSQDARQREIELKFTPSAGLPLIQA 353 Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++LLNL++ A ++ + N + +G E+ I Sbjct: 354 DPDRLTQVLLNLYLNAIHAIDSQGTISVTASASGDNRVKIVVADSGKGI-AAEQLEAIFT 412 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + + V + L Sbjct: 413 PYFTTKAEGTGLGLAVVHNIVEQHGGTIQADSPAGRGAVFTLWLP 457 >gi|257094698|ref|YP_003168339.1| integral membrane sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047222|gb|ACV36410.1| integral membrane sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 918 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56 + L +D + + S + H++ +P+ +I ELL + + LI Sbjct: 671 QEANERLQELDRVKDDIMSSVTHELRTPLTSIRAFSELLRDDPKMHLADRERFLGLIVSE 730 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGE 107 + + A +D + D V + Sbjct: 731 AERLSRLINQTLDLAKIESGRADWNGCELDLKEVVEQSLAATSQLFREKDAHVDLDLPDN 790 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEK 163 + +R +++LNL A L +G + S+ NG R ++ Sbjct: 791 LPLILADRDRLIQVMLNLLSNAAKFLVQGAGRVSVKLRVLADALEVSVSDNGPGIRPEDQ 850 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + RL E + L Sbjct: 851 ELIFEKFRQVGDTMTAKPAGTGLGLPISRRIVEHFGGRLWVESVPGEGATFRFTLP 906 >gi|291614244|ref|YP_003524401.1| CBS sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291584356|gb|ADE12014.1| CBS sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 442 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/272 (11%), Positives = 75/272 (27%), Gaps = 59/272 (21%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL--------------------- 37 + + + S + +L + + I H+I +P+G + N++ Sbjct: 155 LKSSQLALVQSEKMASLGQMVAGIAHEINTPLGYVQNNVAIGQALFQQIQTLIAGYEGLL 214 Query: 38 -ELLDEVGIEDEVMQLIRLSSMSAII------------------------------RLKF 66 +LLDE E+++ ++ F Sbjct: 215 DDLLDEQATEEQIAVQMQQIGELRNDMNAREMLGEMHGLMGDSLYGIAQISELVLNLKNF 274 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFM 124 R+ T +V + + + + V + ++ LNLF Sbjct: 275 SRMDAAATEAVSLNDCIESALNIGRNVLKDKVEVVRELGDLPRITCAPSQLNQVFLNLFT 334 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182 A ++ GK+ I ++ +G E T+I D + + + Sbjct: 335 NAAQAMEGFGKLHIRTWSEDGMVHVNVADSGRGI-PQEILTRIFDPFFTTKPVGEGTGLG 393 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + L Sbjct: 394 LAITHQIIQKHGGDITVDSRVGEGTCFHISLP 425 >gi|228929722|ref|ZP_04092739.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829901|gb|EEM75521.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 484 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|218905899|ref|YP_002453733.1| sensor histidine kinase [Bacillus cereus AH820] gi|218534871|gb|ACK87269.1| sensor histidine kinase [Bacillus cereus AH820] Length = 484 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] Length = 396 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63 S L + + + H+I +P+ AI +L+ + +E Q + ++ I Sbjct: 174 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLVIDAECTNEKEQYAEIIERNSEILLNLFND 233 Query: 64 --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + +D + L V Sbjct: 234 ILDLSSLEADSLSFNIRPIKLIDICLQLEQQFCYKVKNGTKLILDDVDTELYVSGDWNRI 293 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VES 174 +I+ NL A P+G + ++ ++ F +K +G T + Sbjct: 294 IQIISNLLSNAAKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAERVATIFQRFGKIND 352 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L + R+ + L Sbjct: 353 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGKGSRFYFTLP 392 >gi|17229460|ref|NP_486008.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131058|dbj|BAB73667.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 759 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 75/241 (31%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 + F ++ + L S I HD+ + + I +LL D +++++ +++ Sbjct: 381 EAQLFRTQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINA 440 Query: 58 MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + ++ + ++ +++++ V + +S Sbjct: 441 KRGADLVKQVLSFARGVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSG 500 Query: 114 ER---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155 + ++L+NL + A ++P GG + ++ G Sbjct: 501 DSTQLHQVLMNLCVNARDAMPDGGTLTISAENLLIDENYARMNLEAKQGPYIMITVSDTG 560 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I + + + V+ + + + + L Sbjct: 561 VGI-SPENLDRIFEPFFTTKAVGQGTGLGLSTVLGIVKSHGGFVNVYSEEGRGTTFRVYL 619 Query: 214 E 214 Sbjct: 620 P 620 >gi|313672164|ref|YP_004050275.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312938920|gb|ADR18112.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 672 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 73/245 (29%), Gaps = 34/245 (13%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVMQLIRLSS 57 + + + AL L + HDI + + A+ N+L E++D +++++ + Sbjct: 286 EKDNMIFHAQKMDALGVLAGGVAHDINNVLSAMKNALTAIEMMDYPDEIKPMLKILEKAI 345 Query: 58 MSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ F R SVD + + +++ ++ G+ ++ Sbjct: 346 YRGSNIVRQILLFSRKQDVQYKSVDIAKVIDGVVGILKSTADKSIEIKTEIDGDSYNVFG 405 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS----------------------VQDSKNENIFSL 151 + ++ + + + + KN I S+ Sbjct: 406 DENQLEQAILNICINACHAMTIMRKDGKKGGLLTIKLGHYKNQRNNILNCVDKNYIIISI 465 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G E +I + + + V + ++ + + Sbjct: 466 SDTGVGIPRDEIP-RIFEPFYTKKKINEGTGLGLAIVHRIVKDHGGDIYVYSEEGKGTTF 524 Query: 210 SALLE 214 + LL Sbjct: 525 NILLP 529 >gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] Length = 1057 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 58/227 (25%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AKN + L + + H+I +P+ AI L+ ++ E + +++ ++ Sbjct: 688 AKNKAEVSDRLKSAFL--ANMSHEIRTPLNAIVGFSNLIAETEDPDERREYVAIVQENNE 745 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------TG 106 + + + + + I ++V Sbjct: 746 LLLKLISDILDLSKIEAGTLEFNDVEFDVNQMCQEIVRSLSLKVLDKPVELRFGDHLPEC 805 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L+N A G D F ++ G E+ + Sbjct: 806 RLVGDKTRITQVLINFINNALKFTREGSVTLGYRCDDGMMLTFYVEDTGTGIPEQEQESV 865 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 S + + + + R+ Sbjct: 866 FERFVKLNSFVQGTGLGLAISKSIVEQMGGRIGLNSEPGKGSCFWFT 912 >gi|94264642|ref|ZP_01288425.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93454937|gb|EAT05178.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 501 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 58/233 (24%), Gaps = 21/233 (9%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + L L L + + + H+I +P+G I ++ +L +L + Sbjct: 251 RRRLEQQLHQHEKLATLGKMVASVSHEIKNPLGIIRSTAAILGKRLQKEAPGNERLAGII 310 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEK 108 +R + + + + + E Sbjct: 311 VEETSRLDGIVREFLDFARPQSPNFATNSLSEVVEQALGFITPELEKSGIETALELDREL 370 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-------FSLKINGNLARFP 161 S +R ++ L + + + S+ + +G P Sbjct: 371 APFSFDREQLYRALLNILFNAAQAMPEGGKLRVRSRQVLKDEVAVAVLEITDSGVGI-DP 429 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + V + ++ + +L Sbjct: 430 EQRERVFTPFYTDKHRGTGLGLAIVKNIIDNHQGIIEVASRPGQGTTFRIILP 482 >gi|150018636|ref|YP_001310890.1| sensory histidine kinase AtoS [Clostridium beijerinckii NCIMB 8052] gi|149905101|gb|ABR35934.1| signal transduction histidine kinase, nitrogen specific, NtrB [Clostridium beijerinckii NCIMB 8052] Length = 607 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 14/220 (6%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMS 59 L + V L + + H+I +P+ AI S+++L + +D V++ + + Sbjct: 381 RLDRLAAVGELAAGVAHEIRNPLSAISGSVQILVDELPKDNSTRIFGNVVLKEVDRLNGV 440 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSRERAKI 118 L F + + Y S++ + + ++ I + V + + +S + I Sbjct: 441 IEDLLYFAKPSKHYVTSININELVENSLFLLLPSIKKEIVVLETHFDQSIETISVDAQLI 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLARFPEKFTQIVDGNVES 174 L + + + + + I ++ NG E +I D + Sbjct: 501 KQVLVNLLLNATQAMPQENGKITVTTQRVIKGIEIIIEDNGKGI-DQESLPRIFDPFFTT 559 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + E I + L Sbjct: 560 KDTGTGLGLAVSNKIIEIHQGYIRAESIVGIGSTFTLYLP 599 >gi|229521845|ref|ZP_04411262.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae TM 11079-80] gi|229340770|gb|EEO05775.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae TM 11079-80] Length = 597 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERTEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 763 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 60/245 (24%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDL--------VALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50 K + L + + + H++ +P+ +I ELL E I ++ Sbjct: 509 RKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDINNKQE 568 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDK 98 + I L + + + L E + I Sbjct: 569 RYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLAITNRI 628 Query: 99 RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + ++ ++ +IL NL A G ++I +K NG Sbjct: 629 EIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIFDDKLMQICIKDNG 688 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E ++ + V + + + Sbjct: 689 IGI-EKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMGKGSAF 747 Query: 210 SALLE 214 + + Sbjct: 748 TFTIP 752 >gi|15643616|ref|NP_228662.1| sensor histidine kinase [Thermotoga maritima MSB8] gi|4981387|gb|AAD35935.1|AE001752_2 sensor histidine kinase [Thermotoga maritima MSB8] Length = 489 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 31/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44 + M + I H++ +P+ AI LE++ + Sbjct: 242 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQS 299 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 E + L + + + E + V V Sbjct: 300 NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 359 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161 E ++LLNL + + + ++ NG Sbjct: 360 PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 418 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + R+ E + K Sbjct: 419 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 478 >gi|83754490|pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 31/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44 + M + I H++ +P+ AI LE++ + Sbjct: 11 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQS 68 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 E + L + + + E + V V Sbjct: 69 NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 128 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161 E ++LLNL + + + ++ NG Sbjct: 129 PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 187 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + R+ E + K Sbjct: 188 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 247 >gi|163849409|ref|YP_001637453.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|163670698|gb|ABY37064.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] Length = 524 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ A+ +LE+LD + + EV+ +R + I + + L Sbjct: 292 FVADVSHELRTPLTAMQGNLEILDRGTCPDPALLKEVIGDMRRETARLIRMVNDLLLLAQ 351 Query: 73 YTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 V L ++ V R+ + LLNL + Sbjct: 352 SETHVVLRHEPVELDTLLLEVFRELRPLAGQVRLRIGAEDQILVYGDRDRIKQALLNLGV 411 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTIDSH 179 A P GG V +S++ + S+ G F + + Sbjct: 412 NALQYTPPGGLVILSLERYEQFACLSVADTGVGISEEARAHIFERFYRVDRSRSRHSGGA 471 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 472 GLGLSIVKWVAEAHGGYVTVASEVGRGSTFAIYLP 506 >gi|309789691|ref|ZP_07684271.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308228177|gb|EFO81825.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 673 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 68/247 (27%), Gaps = 39/247 (15%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--- 60 L + L AL L + + H+I +P+ AI+N++ LL + DE Q + Sbjct: 425 NQLLQTEKLAALGRLSASMAHEINNPLQAINNAVHLLLNRSLTDEKRQRYLEMTREEIDH 484 Query: 61 -----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS--- 112 L F R + VD + L + + + + + + Sbjct: 485 LISIVQRILDFHRPSREGMRPVDLVEILDGVLSLTSTQLHTQQIELIREIDPDLPHVLAV 544 Query: 113 -RERAKILLNLFMVAHASLP------------------------RGGKVTISVQDSKNEN 147 ++ L+L A ++ + I+ Sbjct: 545 GSHMRQVCLSLIFNAIEAMNAGGELRVRAYLVTEQEDPHTDLFTIAVERRITPPMCGPMV 604 Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + + G + +I + + I + + ++ + I Sbjct: 605 VVEISDTGPGIPTQDLH-KIFEPFYTTRIKGTGLSLAMTYNIIEQHHGEMAVRSIPGQGA 663 Query: 208 VLSALLE 214 L Sbjct: 664 TFRIRLP 670 >gi|269837966|ref|YP_003320194.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787229|gb|ACZ39372.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 366 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 70/229 (30%), Gaps = 20/229 (8%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIR 63 L + L + + H++ +P+ +I LL++ ++E + L+ + Sbjct: 125 RLASQGAHLRSDLAAILSHEMRTPLASIKGYASALLLEDAYWDEETRREFLLAIDAETDH 184 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------- 113 L + +++ + E ++ + +++ ++ Sbjct: 185 LTQLIEDVLDASIIEAGALRIEPEPILLPHMVRRAIDKLALRTDRHRFVLSFPPDFPAVM 244 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L NL A P+GG + +S + + +E + S+ G Sbjct: 245 ADALRIDQVLSNLLDNAVKYSPQGGLIVVSGRVAGDEVVVSVADQGIGIAPEHLNKLFER 304 Query: 170 GNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E V S L Sbjct: 305 YFRASTNGRRVAGTGLGLPISDAIIRAHGGRIWAESTVGQGTVFSFTLP 353 >gi|228942607|ref|ZP_04105139.1| hypothetical protein bthur0008_52340 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975537|ref|ZP_04136089.1| hypothetical protein bthur0003_52810 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982173|ref|ZP_04142462.1| hypothetical protein bthur0002_53270 [Bacillus thuringiensis Bt407] gi|228777525|gb|EEM25803.1| hypothetical protein bthur0002_53270 [Bacillus thuringiensis Bt407] gi|228784147|gb|EEM32174.1| hypothetical protein bthur0003_52810 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817033|gb|EEM63126.1| hypothetical protein bthur0008_52340 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943256|gb|AEA19152.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 672 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ + + + + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSLIRDIIPLIKIDTYNQNKYIQFDTNDIPKLLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVQDQGQGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKHNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|297565539|ref|YP_003684511.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849988|gb|ADH63003.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 442 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 66/228 (28%), Gaps = 22/228 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 + A L + H++ +P+ ++ LE L E ++ + ++ + Sbjct: 210 AVREARERERAFLA-EVSHELRTPLTSLTGYLERLSRNPAEQSALEGAKRTTEHLTRMVG 268 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 + + + +V++ + V + E +++ + ++ NL Sbjct: 269 DLLALARGEAERSVNAHIVSLGEVLKQVVQEYPGVSLRLPKEDLEVLGDPDRLMQLARNL 328 Query: 123 FMVAHASLPRGGKVTISVQ----------------DSKNENIFSLKINGNLARFPEKFTQ 166 A + R V + + +F+++ +G PE + Sbjct: 329 ISNAVRAAGRPQGVRVMAWRENLDPFETLPPTQGTPPEGWAVFAVRDDGPGI-DPEILPR 387 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + ++ + L Sbjct: 388 LFQRFARGPQGGTGLGLAIARQIAMAHGGKIEVTSKPGD-TRFTVYLP 434 >gi|108762623|ref|YP_634972.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108466503|gb|ABF91688.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 842 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 26/238 (10%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 K + L ++ + A+ L + + H+I +P+ + +LE + + + Sbjct: 436 TKELQARLVAAERVAAVGTLAAGVGHEINNPLAYLVLNLEAAERGLSQGGMSGMRDAMAN 495 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ + F R G VD + ++I + R+ + Sbjct: 496 MRGALEGAERIRLIVRDLQVFSRQGNQDPGLVDLNALVPPAVRIISHALRHRARLVEEFG 555 Query: 106 GEKIDL--SRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLA 158 ++LLNL + A ++P G V+ + +G Sbjct: 556 PVPRVSGSEARLGQVLLNLLVNAMQAIPEGNPSMNEVRVRTSTDASGRARVDVVDSGAGI 615 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + L V S LL Sbjct: 616 -PAHVLPRIFEAFYTTKSSGEGTGLGLAICQQIVRAHGGELEVRSEPGRGSVFSVLLP 672 >gi|116749808|ref|YP_846495.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698872|gb|ABK18060.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 1509 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59 ++ ++ + L I HD + + AI E+ E + + + Sbjct: 1128 ESRLLQAQKIEAIGTLAGGIAHDFNNILAAIIGYTEMTRQTVEHPDPRRYLDQVLKACDR 1187 Query: 60 AIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LS 112 A + F R A VD + + + + ++ +++ Sbjct: 1188 ARNLVGQILAFSRKAERDIRPVDVRSIVKEALKFLRATLSSTIKIRQKIAPGTHAVLADP 1247 Query: 113 RERAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKINGN 156 + ++L+NL A ++ + S ++ G Sbjct: 1248 TQIHQVLINLCTNAAHAMREKGGVLQVDLENIDVRPGSTAFPADLPSGPYLKLTISDTGT 1307 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + V + E + V S L Sbjct: 1308 GI-DHAILHRIFDPFFTTKRPGEGTGLGLSVVYGIVKECGGTVTVSSEPGAGSVFSVWLP 1366 >gi|291615089|ref|YP_003525246.1| multi-sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291585201|gb|ADE12859.1| multi-sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 541 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 16/226 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M + + L AL L + I H++ +P+ +I + ELL E + +L ++ Sbjct: 311 MQRAQEQA-QQVKLAALGRLTANIAHEVRNPLSSISYATELLKEQRHDPAQARLFQIILD 369 Query: 59 SAIIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + ++ L + E +QV + Sbjct: 370 NTSRLNRIVQDVMLVNRRDRVQAESLELATRLEELIESVCQAEKVSRSVFELQVDPSCRV 429 Query: 109 IDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L NL A + + + + +G E + Sbjct: 430 RFDRGHFEQVLWNLCRNALRYSQKRVGSVRLRAFTAEDGNAVLEVSDDGGGV-SGEASQK 488 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + Y L N + D Sbjct: 489 LFEPFFTTDAGGTGLGLYIARELCDANGAMIEYRRALDGGACFRIT 534 >gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 737 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ S + + + + H+I +P+ + ELL E ++ Q + S Sbjct: 224 KDTAREAESANQAKSDFLATVSHEIRTPLNGVLGMTELLRERELDGTSHQYVETIHESGS 283 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + + L + + + + V S Sbjct: 284 QLLTLISDLLDFSKIEAGHLEIERETFSLQALIDSLLRLLEPRAQHVELISDVAPSVPSH 343 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++LLNL A RG I + F ++ G + ++ Sbjct: 344 SLGDAGRLRQVLLNLLSNALKFTSRGSVTLIVKPMRGDWMHFEVRDTGCGIEDAD-PQRL 402 Query: 168 VDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + R+ L Sbjct: 403 FQPFYQGASAVHYQGGTGLGLAISKRLVEAMQGRIGVSSPAGEGSRFWFELP 454 >gi|260062917|ref|YP_003195997.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region [Robiginitalea biformata HTCC2501] gi|88784485|gb|EAR15655.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region [Robiginitalea biformata HTCC2501] Length = 576 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 24/222 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------LK 65 +L + + H+I +P+ I +LL E + + + + +A Sbjct: 72 MLIATVSHEIRTPLSGIIGFTDLLSESPLGEREAEYVGAIRSAAHGLLEIVNELREFSTI 131 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKILL 120 + + LG++ + + I D + + + ++IL+ Sbjct: 132 ESGTWKATSIPFNPKQVLGEVGYLCKTLIVRDNVAFRTEIARDLPDLLLGDPSKLSQILM 191 Query: 121 NLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174 NL A ++ + ++ G + + F G Sbjct: 192 NLLGNAIKFTASGHITLRMRCEWRKRTCTLHGEVEDTGPGIQPSDLGLIFNPFHQGGQTG 251 Query: 175 TIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E S L Sbjct: 252 ETQGIGTGLGLSIVKKIIERQGGAIWAESEPGSGSRFSFRLP 293 >gi|330005099|ref|ZP_08305109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] gi|328536432|gb|EGF62785.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] Length = 464 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQ 51 ++ L + L+AL L + + H+I +P+ +I E G ++ Q Sbjct: 223 RRSRKQLLEAMARKEKLLALGHLAAGVAHEIRNPLSSIKGLAKYFAERTSPGGESHQLAQ 282 Query: 52 LIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 ++ + L+ +R A +VD + Q++ + Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQTVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 ++LLNL++ A ++ R G + ++ ++ + + +G E Sbjct: 343 ELTTISADPDRLNQVLLNLYLNAMQAIGRDGVIRVTASEADRQRVKIVVTDSGKGMSDEE 402 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + V + ++ + E + + L Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453 >gi|251836869|pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|251836871|pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism Length = 258 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 31/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44 + M + I H++ +P+ AI LE++ + Sbjct: 11 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQS 68 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 E + L + + + E + V V Sbjct: 69 NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 128 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161 E ++LLNL + + + ++ NG Sbjct: 129 PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 187 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + R+ E + K Sbjct: 188 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 247 >gi|224368296|ref|YP_002602459.1| putative response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223691012|gb|ACN14295.1| putative response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 408 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 18/224 (8%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60 + + +L + + I H+I +P+ I L + G E +++I + Sbjct: 177 QLASKADRMSSLGRMAAGIAHEINNPLTGILLYSSNLSKKADPGPFKEGLEIIMHETQRC 236 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + + + + + + +V + + S + Sbjct: 237 KKIIQGLLDFSREKKPQKIQANINKVIEKSLALMDNELFIRRIKVVRDFDYDIKSFSLDP 296 Query: 116 AKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ L + ++ + + + ++ NG + +I + Sbjct: 297 DQLEQVLVNLLFNAVHAVEEKGLITIRSKNSEDGKSIVVEVEDNGCGIH-KDNLKKIFEP 355 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+ +++ L Sbjct: 356 FYTTRSSGTGLGLSVSYGIIRNHQGRIKILSEPGVGTLITLNLP 399 >gi|162452262|ref|YP_001614629.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161162844|emb|CAN94149.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 2003 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 30/240 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 AK S + S + H++ +P+ I ++L+ E +++I+ SS Sbjct: 1519 AKEAAERASQAK--SDFLSSMSHELRTPLNGIMGHAQILERTPDVPPAWREGLRVIQKSS 1576 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108 + + + + + + Sbjct: 1577 EHLLSLINDLLHLAKIEAGKMDSVLTEFRLPALVRTVVDLCRVRAEAKGITFSDELRGPA 1636 Query: 109 ----IDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLAR 159 + ++LLNL A R +V + F ++ G Sbjct: 1637 LQAVCADEKRLMQVLLNLLGNAIKFTERGGVSLHVEVLEETVPAGRMVRFRIEDTGPGI- 1695 Query: 160 FPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I + + + + L + + + V + L Sbjct: 1696 APEHLSRIFEPFEQVGEQSAKSEGTGLGLAITKKLVQQMGGAIEVQSEVGEGSVFAVTLP 1755 >gi|138895266|ref|YP_001125719.1| two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|134266779|gb|ABO66974.1| Two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] Length = 456 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 18/215 (8%), Positives = 52/215 (24%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRLAF 71 + I H++ +P+ + ++ +E+E + ++ Sbjct: 240 ASISHELRTPLTYVKGYADIARRPNMEEEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQ 299 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFM 124 L + + D + + Q + ++++NL Sbjct: 300 HSFQIHKEPTNLCSFLKKLHDKMHPAFQAKKMSLVYQCEKNITVHIDQKRFEQVMINLLD 359 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179 A +G V+I + K+ + + G + T Sbjct: 360 NALKYADQGSTVSIDARAEKDNIVMIVSDEGRGIPEEDLPHIFERFYRVDKSRSRTSGGT 419 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L Sbjct: 420 GLGLAIAKEIVEAHGGSIYAASEYGKGTNMIITLP 454 >gi|108760501|ref|YP_629607.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108464381|gb|ABF89566.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 509 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 25/233 (10%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59 LS M S + H++ +P+ +I +E L + EV+ L+ + Sbjct: 275 REAQLSRMK--TDFVSLVSHELRTPLTSIRMFIETLALGRLKDPAQTQEVLTLLMRETER 332 Query: 60 AIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 I ++ + Y + + L + ++ V ++ + Sbjct: 333 LSIFVERVLDWARIEGGRKVYQREIVPVSELVNAAVEAFRTQRMEDGVDLTVEVSDGLPA 392 Query: 113 RERAKIL-----LNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---K 163 + + LNL A+ + V+ S +++ NG E Sbjct: 393 LDVDRAAVAGALLNLLQNAYKYSGPDNRRITLQVRGSGKGVDLTVEDNGVGIAPQERTRI 452 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + R+ + + L Sbjct: 453 FERFYRVDNLLTRRTEGSGLGLAITRRIIETHGGRISVQSEPGKGSRFTIHLP 505 >gi|30262629|ref|NP_845006.1| sporulation kinase B [Bacillus anthracis str. Ames] gi|47527936|ref|YP_019285.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor'] gi|49185471|ref|YP_028723.1| sporulation kinase B [Bacillus anthracis str. Sterne] gi|165869078|ref|ZP_02213738.1| sporulation kinase B [Bacillus anthracis str. A0488] gi|167632511|ref|ZP_02390838.1| sporulation kinase B [Bacillus anthracis str. A0442] gi|167637789|ref|ZP_02396068.1| sporulation kinase B [Bacillus anthracis str. A0193] gi|170685331|ref|ZP_02876555.1| sporulation kinase B [Bacillus anthracis str. A0465] gi|170704644|ref|ZP_02895110.1| sporulation kinase B [Bacillus anthracis str. A0389] gi|177649662|ref|ZP_02932664.1| sporulation kinase B [Bacillus anthracis str. A0174] gi|190565415|ref|ZP_03018335.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I] gi|227814539|ref|YP_002814548.1| sporulation kinase B [Bacillus anthracis str. CDC 684] gi|229600427|ref|YP_002866946.1| sporulation kinase B [Bacillus anthracis str. A0248] gi|254685215|ref|ZP_05149075.1| sporulation kinase B [Bacillus anthracis str. CNEVA-9066] gi|254737666|ref|ZP_05195369.1| sporulation kinase B [Bacillus anthracis str. Western North America USA6153] gi|254743154|ref|ZP_05200839.1| sporulation kinase B [Bacillus anthracis str. Kruger B] gi|254751981|ref|ZP_05204018.1| sporulation kinase B [Bacillus anthracis str. Vollum] gi|254760502|ref|ZP_05212526.1| sporulation kinase B [Bacillus anthracis str. Australia 94] gi|30257261|gb|AAP26492.1| sporulation kinase B [Bacillus anthracis str. Ames] gi|47503084|gb|AAT31760.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor'] gi|49179398|gb|AAT54774.1| sporulation kinase B [Bacillus anthracis str. Sterne] gi|164715804|gb|EDR21321.1| sporulation kinase B [Bacillus anthracis str. A0488] gi|167514338|gb|EDR89705.1| sporulation kinase B [Bacillus anthracis str. A0193] gi|167532809|gb|EDR95445.1| sporulation kinase B [Bacillus anthracis str. A0442] gi|170130445|gb|EDS99306.1| sporulation kinase B [Bacillus anthracis str. A0389] gi|170670691|gb|EDT21430.1| sporulation kinase B [Bacillus anthracis str. A0465] gi|172084736|gb|EDT69794.1| sporulation kinase B [Bacillus anthracis str. A0174] gi|190563442|gb|EDV17407.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I] gi|227006941|gb|ACP16684.1| sporulation kinase B [Bacillus anthracis str. CDC 684] gi|229264835|gb|ACQ46472.1| sporulation kinase B [Bacillus anthracis str. A0248] Length = 422 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 NTKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413 >gi|65319950|ref|ZP_00392909.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] Length = 363 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 133 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 192 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 193 RAQGIIXDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 252 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 253 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 311 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 312 NTKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 354 >gi|222527409|ref|YP_002571880.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|222451288|gb|ACM55554.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 488 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ A+ +LE+LD + + EV+ +R + I + + L Sbjct: 256 FVADVSHELRTPLTAMQGNLEILDRGTCPDPALLKEVIGDMRRETARLIRMVNDLLLLAQ 315 Query: 73 YTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 V L ++ V R+ + LLNL + Sbjct: 316 SETHVVLRHEPVELDTLLLEVFRELRPLAGQVRLRIGAEDQILVYGDRDRIKQALLNLGV 375 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTIDSH 179 A P GG V +S++ + S+ G F + + Sbjct: 376 NALQYTPPGGLVILSLERYEQFACLSVADTGVGISEEARAHIFERFYRVDRSRSRHSGGA 435 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 436 GLGLSIVKWVAEAHGGYVTVASEVGRGSTFAIYLP 470 >gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 812 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + S L + + I H+I +P+ AI +LL D+ ++E + I+ ++ Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + V + Q + + ++ +Q+ Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYTPKPVCLYQFCAMMVQKMRNKVSEGVELQIDEDSPLD 694 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 S +++ N A RG D++ + ++ G E Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + +S + + + + + L Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804 >gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 407 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI +L+ +++ ++I +S + Sbjct: 185 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 244 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ +D + L V Sbjct: 245 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFWHKTQNGVKLILDDVDTDMYTSGDWNRI 304 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 +I+ NL A P+G + ++ ++ F +K +G T Sbjct: 305 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD 363 Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +L + R+ + L Sbjct: 364 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 403 >gi|229191211|ref|ZP_04318199.1| hypothetical protein bcere0002_28760 [Bacillus cereus ATCC 10876] gi|228592226|gb|EEK50057.1| hypothetical protein bcere0002_28760 [Bacillus cereus ATCC 10876] Length = 801 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795 >gi|225849372|ref|YP_002729536.1| integral membrane sensor signal transduction histidine kinase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644390|gb|ACN99440.1| integral membrane sensor signal transduction histidine kinase [Sulfurihydrogenibium azorense Az-Fu1] Length = 670 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 20/229 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLI 53 L S L + L + I H++ +P+ I+ S L + I Sbjct: 434 ENQILQSEKLAVIGKLVASISHEVKNPLSIINQSAYSLKRKVNKLCKENAEEIIAGLDRI 493 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKID 110 S A ++ + S I + D+ + A + +S Sbjct: 494 EKSVYRANDIVERLLNFTKPYYSKIESINIKDVIEEAIKLSFLQAKRSDISISKRLSNAY 553 Query: 111 LSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKFT 165 + +R ++ + ++ SK + ++ G Sbjct: 554 IKGDRNALIQLFINILINAIESIEDKGSISIKAYKDKSKGLAVIKIRDTGVGIPSQYL-D 612 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + ++ E + + L Sbjct: 613 KIFEPFFTTKESGTGLGLAVVYRIVESHGGKIYVESEEGKGTEFTVELP 661 >gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC 43183] gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC 43183] Length = 906 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 21/229 (9%), Positives = 54/229 (23%), Gaps = 20/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI ++ + ++ ++ Sbjct: 502 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDAEERQNYYDIVEANNE 559 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + D + Sbjct: 560 RLLQLINEILDLSKIEAGIVEFTITPVRLHPLCKEIHDALKFRCPEGVELVYEASDEEIT 619 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A RG + NE F + G + +K ++ Sbjct: 620 VEGDKNRIFQVISNLIGNAFKFTTRGSVGYGYRRK-GNEIEFYVSDTGIGIQ-TDKLAKV 677 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + + L Sbjct: 678 FERFVKVNTFAQGTGLGLSICKTIIERLGGTISVCSEVGKGTTFTFTLP 726 >gi|238792705|ref|ZP_04636337.1| Signal transduction histidine kinase [Yersinia intermedia ATCC 29909] gi|238728061|gb|EEQ19583.1| Signal transduction histidine kinase [Yersinia intermedia ATCC 29909] Length = 479 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 71/220 (32%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKF 66 L + L + + H+I +P+ +I + + E +L ++ + + Sbjct: 245 RKDKLAVMGNLAAGVAHEIRNPLSSIKGFAKYFESRSLPGSEEQELAKVMAKEVDRLNRV 304 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKID---LSRER 115 + D +I ++IE + ++ + Sbjct: 305 ISELLELVRPTDLRFQRVNINEIIEHSLHLVRQDAESKHIKILFAGDRHLPWVELDPDRF 364 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ G + IS++ S+K +G + I D + Sbjct: 365 TQVLLNLYLNAIQAIGANGTLAISLELVEGIHLKVSIKDSGKGITADDLP-HIFDPYFTT 423 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + E++ ++ + S + Sbjct: 424 KASGTGLGLAIVQKVVEEHQGQISVTSTPQSGTIFSLTIP 463 >gi|229145815|ref|ZP_04274195.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24] gi|228637646|gb|EEK94096.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24] Length = 448 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNNGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELPK 448 >gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1186 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 70/233 (30%), Gaps = 25/233 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSA 60 + L + S + H++ +P+ +IH SL+L+ + +L+ ++ + Sbjct: 953 RKANERLQNE-----FISMVSHELRTPLTSIHGSLKLMSMMIGDSNSKEKELVAIALKNT 1007 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGE 107 + L +G V ++ ++++ + + Sbjct: 1008 DRLGRLINDVLDLERIESGRVSMTRQDCNLAELMQHTAQAMAPMALELNVKLVVEPIDIT 1067 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + L NL A P V +S + + + + K +G + F Sbjct: 1068 ISLDPDRIIQTLTNLLSNAIKFSPSRANVILSATEREQDVLLCTKDSGPGIPADKTELIF 1127 Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + ++ ++ E + L K Sbjct: 1128 ERFQQVDSRESRRLGGTGLGLAICKQIVLQHGGKIWVESELEKGSAFYFTLPK 1180 >gi|218778198|ref|YP_002429516.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759582|gb|ACL02048.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 603 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 67/220 (30%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59 L A+ L + + H+I +P+ +I D+ I + + + + Sbjct: 370 RQEKLSAIGELAAGVAHEIRNPLSSIKGLATYFSQKFDKGSDDEEIAQGMAREVDRLNRV 429 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +D + ++ +D + + + G+ + ++ Sbjct: 430 VSQLLDFARPSDLNLRPMDINELIPHSLKLVKQDALTRNINIISQPGGKPAFAMADADRL 489 Query: 119 LLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 L + ++ K + + + ++ G + +I D + Sbjct: 490 TQCLLNLYLNAMAAMNKGGVLTVRTAVEDSGDVRVEVEDTGKGIPSQDLN-RIFDPYYTT 548 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E ++S + Sbjct: 549 KASGTGLGLAIVHKILEGHHARIKVESRPGQGTLVSMFIP 588 >gi|270307587|ref|YP_003329645.1| sensor kinase, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153479|gb|ACZ61317.1| sensor kinase, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 581 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51 + +++ + + I H++ +PI ++ E L E D + Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPISSLKLLTETLQEGAASDPAVAAGFIDKIHL 405 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106 + + + G + ++ + V Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLRLQPGDISTAIKLAAERLRPQAERAGISLGVELPE 465 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++L+NL A P+GG++ I + + + +G + Sbjct: 466 TLPQVKLDENRVEQVLVNLVHNAIKFTPKGGRIKIGARTQGQTLVVYVSDSGIGIPEEDL 525 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + E + S L Sbjct: 526 TRVFERFYKVDKARSSGGTGLGLAISKHIVQAHGGTIWAESVYGKGATFSFSLP 579 >gi|104783675|ref|YP_610173.1| sensory box histidine kinase CrbA [Pseudomonas entomophila L48] gi|95112662|emb|CAK17390.1| sensory box histidine kinase CrbA [Pseudomonas entomophila L48] Length = 989 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 736 LTETQALEEKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 795 Query: 48 EVMQLIRLSSMSAIIRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 ++++ + S + F + + + + V Sbjct: 796 QILEQTKRVSRIVQSLMSFAHAGGSQQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 855 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A++L+NL A + P G V + + S++ ++ G+ Sbjct: 856 CDPDHWVEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVSEHTVDLVVEDEGSGIPKS 915 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 916 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 974 >gi|307821953|ref|ZP_07652185.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307736519|gb|EFO07364.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 545 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 60/223 (26%), Gaps = 23/223 (10%) Query: 14 LVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIRLSSMSAI 61 L+ + S I H++ P+ AI + + L+ I + Q + Sbjct: 314 LMGEMASGIAHEVNQPLTAISSYTQVSLNLINTENPDLVRLTEILSKTQQQALRAGRIIH 373 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +F++ + S D + + + + D +++ + + +I Sbjct: 374 RMREFVKSHSKHRSSADVNTLIHEAVGLCIAELKQNDIKLKFELENNLPPVYVDHIQIEQ 433 Query: 121 NLFM---VAHASLPRGGKVTISVQD------SKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + +L N +K NG ++ +I+ Sbjct: 434 VIINLIRNSVEALQNLSAKQQRQLTVNSRLAPNNGVRVEVKDNGPGL-DQDQRQKILTPF 492 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + L + L L Sbjct: 493 YTTKADGMGMGLSISRSLIEAHNGTLHCNSQPGKGATFYFTLP 535 >gi|228959448|ref|ZP_04121137.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800224|gb|EEM47152.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 448 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVQVELPK 448 >gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1116 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 54/236 (22%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + L +D L + H++ +P+ I E L + + LI Sbjct: 432 ETKNTALQRLDQLKDEFLANTSHELKTPLNGIIGIAESLMDGVTGNLSDATRFNLSLIVS 491 Query: 56 SSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S + + V + + + + ++ Sbjct: 492 SGRRLHQLVNDLLDFSQLKHHNLQLNIKPVGIREVTHVVLTISQPLVGKKPIELINGINP 551 Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 I +IL NL A +G + + + G + Sbjct: 552 DIPPVDADENRVQQILYNLVSNAIKFTEQGTIEVSATPVNDR-LEIHVVDTGIGISPDKI 610 Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DG++ + L + + + + L Sbjct: 611 NRIFESFEQADGSITRHYGGTGLGLAITKQLVELHGGIIKVDSTPGVGSRFTFTLP 666 >gi|153829230|ref|ZP_01981897.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 623-39] gi|148875268|gb|EDL73403.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 623-39] Length = 597 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|27466937|ref|NP_763574.1| two-component sensor histidine kinase [Staphylococcus epidermidis ATCC 12228] gi|57865895|ref|YP_190074.1| sensory box histidine kinase YycG [Staphylococcus epidermidis RP62A] gi|242243237|ref|ZP_04797682.1| two-component sensor histidine kinase [Staphylococcus epidermidis W23144] gi|251811383|ref|ZP_04825856.1| two-component sensor histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|282874740|ref|ZP_06283619.1| PAS domain S-box [Staphylococcus epidermidis SK135] gi|293367562|ref|ZP_06614215.1| sensor histidine kinase YycG [Staphylococcus epidermidis M23864:W2(grey)] gi|81672854|sp|Q5HK19|WALK_STAEQ RecName: Full=Sensor protein kinase walK gi|81844243|sp|Q8CU87|WALK_STAES RecName: Full=Sensor protein kinase walK gi|27314479|gb|AAO03616.1|AE016744_19 two-component sensor histidine kinase [Staphylococcus epidermidis ATCC 12228] gi|57636553|gb|AAW53341.1| sensory box histidine kinase YycG [Staphylococcus epidermidis RP62A] gi|58003339|gb|AAW62232.1| two-component sensor histidine kinase [Staphylococcus epidermidis] gi|242233186|gb|EES35498.1| two-component sensor histidine kinase [Staphylococcus epidermidis W23144] gi|251805132|gb|EES57789.1| two-component sensor histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|281296456|gb|EFA88971.1| PAS domain S-box [Staphylococcus epidermidis SK135] gi|291318275|gb|EFE58668.1| sensor histidine kinase YycG [Staphylococcus epidermidis M23864:W2(grey)] gi|319399898|gb|EFV88144.1| sensory box histidine kinase YycG [Staphylococcus epidermidis FRI909] gi|329728493|gb|EGG64929.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU144] gi|329736055|gb|EGG72328.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU045] Length = 610 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 66/219 (30%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + R + I + + Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDKELAPSFLSVTREETERMIRLVNDLLQLSK 440 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ ++ ++ N+ Sbjct: 441 MDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 500 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 501 ITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599 >gi|95929327|ref|ZP_01312070.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134443|gb|EAT16099.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 374 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 14/223 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAI 61 + L L L + + H+I +P+G+I + E+L ED + + Sbjct: 140 EEQLRQADRLTTLGELSAGLAHEIRNPLGSIRGTAEILQGAFSTEDRYHEFTTILINEVD 199 Query: 62 IRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + Y L + + V V V V Sbjct: 200 RLNQVLENYLRYARPDSMEKQQFSLAPILDDVVQLTAVKARKNRVAVDVDVDVANSVAGD 259 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + + LNL + A ++ GG ++I +N + G E+ +I Sbjct: 260 ASQYKQAFLNLILNALQAMGEGGCLSILATTDENRAVVRFCDTGPGL-TEEQRQKIFKPF 318 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + H + ++ E + L Sbjct: 319 YTTRSKGTGLGLAITERIVHNHGGSIMVESLPKQGCCFELRLP 361 >gi|329921992|ref|ZP_08277799.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328942452|gb|EGG38715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 484 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 18/212 (8%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72 S I H++ +P+ +I E LD + MQ+I + I ++ + Sbjct: 250 SSISHELRTPLTSIKGWSETLDSGGYDPEETKIGMQIISKETDRLIGLVEELLDFSKLQQ 309 Query: 73 --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + L + + V +++ ++ LN+ Sbjct: 310 NEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEKPIIYGDVNRLKQVFLNIVD 369 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182 A G + +S + I +++ +G E ++ D + + Sbjct: 370 NAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGI-SDEHLRRVKDRFFQVNPLNGGTGLG 428 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L + + E H + L Sbjct: 429 LAITQQLVELHGGTMEMESELGHGTAVIVKLP 460 >gi|294497159|ref|YP_003560859.1| sporulation kinase KinC [Bacillus megaterium QM B1551] gi|294347096|gb|ADE67425.1| sporulation kinase KinC [Bacillus megaterium QM B1551] Length = 436 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 17/225 (7%), Positives = 70/225 (31%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 ++ ++S + + + + H+I +P+ ++ ++++ D + ++ Sbjct: 204 RQDEELMITSEKMSVIGQMAGAVAHEIRNPLTSLKGFVQVMQASKETNDTYLDIMMSEID 263 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKI 109 + M + L +I + + + + Sbjct: 264 RINLISSEMLILGKKQHVSFEKTNLCEILKQVITLMEAQANLNNVSILLKETAKRPIYVS 323 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + ++ +N+ ++ G +TI+V++ + + NG E+ Q+ Sbjct: 324 ADANQLKQVFINVIKNGVEAIMEKGHITITVEEKDTRALIHFEDNGIGM-SQERIEQVGT 382 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + ++ + Sbjct: 383 PFYSTKEAGTGLGLAVCYKIMERHQGTMHFKSGKGKGTTVTIDMP 427 >gi|228901195|ref|ZP_04065396.1| hypothetical protein bthur0014_23910 [Bacillus thuringiensis IBL 4222] gi|228858445|gb|EEN02904.1| hypothetical protein bthur0014_23910 [Bacillus thuringiensis IBL 4222] Length = 360 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + + + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMYGSLKIRSIVSKGTTLTITFPK 354 >gi|228965579|ref|ZP_04126661.1| hypothetical protein bthur0004_24060 [Bacillus thuringiensis serovar sotto str. T04001] gi|228794172|gb|EEM41693.1| hypothetical protein bthur0004_24060 [Bacillus thuringiensis serovar sotto str. T04001] Length = 360 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + + + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMYGSLKIRSIVSKGTTLTITFPK 354 >gi|261406259|ref|YP_003242500.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261282722|gb|ACX64693.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 484 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 18/212 (8%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72 S I H++ +P+ +I E LD + MQ+I + I ++ + Sbjct: 250 SSISHELRTPLTSIKGWSETLDSGGYDPEETKIGMQIISKETDRLIGLVEELLDFSKLQQ 309 Query: 73 --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + L + + V +++ ++ LN+ Sbjct: 310 NEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEKPIIYGDVNRLKQVFLNIVD 369 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182 A G + +S + I +++ +G E ++ D + + Sbjct: 370 NAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGI-SDEHLRRVKDRFFQVNPLNGGTGLG 428 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L + + E H + L Sbjct: 429 LAITQQLVELHGGTMEMESELGHGTAVIVKLP 460 >gi|251797199|ref|YP_003011930.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247544825|gb|ACT01844.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 478 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 76/222 (34%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + + L+ L + I H+I +P+ ++ +++ + + + Sbjct: 255 EELIRRSEKLSLIGELAAGIAHEIRNPLTSLRGFMQMYLKEDKDGSKKLRNDVMISEIDR 314 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEKIDLS 112 + + + + L D+ ++ V + + I+ Sbjct: 315 INEIVSELLVLAKPSNEVYELRDVVHLLTHVTRLFEGQANLYNVQIKHEFDANLPLIECQ 374 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ +N+F A S+P+GG+V++ + K+ +K G E T+I + Sbjct: 375 SSINQVFINVFKNAIESMPKGGEVSLQAKQIKDRINIRIKDTGYGI-PHEDITKIGNPFF 433 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +K + E ++ +L Sbjct: 434 TTKETGTGLGLMVSMRIIQNHKGTMRIESEVGKGTMVEIILP 475 >gi|78223353|ref|YP_385100.1| histidine kinase [Geobacter metallireducens GS-15] gi|78194608|gb|ABB32375.1| histidine kinase [Geobacter metallireducens GS-15] Length = 603 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIR 54 + L + + A+ L + H+I +P+ AI +++++ + ++ ++ Sbjct: 362 LESTFDELLVAKKVAAVGHLALGLAHEIRNPLSAIQMNMQMIRKKIAPAGTLRENFSIVE 421 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGE 107 L + L I + + V V++ Sbjct: 422 EEIQRLNRLLNDVLDFARSRPLRLETAELEGIVDRLMQLMAQRLEEEQVRSEVRIDSPLN 481 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEK 163 + + ++LLNL + A ++ R TI+ Q + + G P+K Sbjct: 482 LVCDPEQIHQVLLNLVLNALDAMNRTPPDARLLTITAQSMSGMALLRVSDTGGGI-PPDK 540 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + + + + + + E + L Sbjct: 541 LEQLFEPFFTTKASGGGLGLSILQTIVLRHGGSVSVESEPGRGATFTVTLP 591 >gi|75763238|ref|ZP_00742996.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489277|gb|EAO52735.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 419 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + + + L + +I ++ + Sbjct: 250 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMYGSLKIRSIVSKGTTLTITFPK 413 >gi|322420087|ref|YP_004199310.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320126474|gb|ADW14034.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 593 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 19/226 (8%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 + S + A L + I H++ +P+ I +L ++ R Sbjct: 363 QLVQSEKMAAFGALGAGIAHEVKNPLAGILGITQLSLRGVGGGHSLEKNLHIIEKETRRC 422 Query: 65 KFMRLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLS 112 K + + + + V +V++ + Sbjct: 423 KTIIENLLKFARQEQVEFGEVDVSQVVADALAIVDHQLGINSVKVEMDLEPGLPGCRGNA 482 Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++L+NL + A ++ G + + + + NG E +I D Sbjct: 483 NQLQQVLMNLMINAQQAMGGRGGTVRLSARRREEGGVELRVSDNGPGI-PKEIRAKIFDP 541 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E L Sbjct: 542 FFTTKPAGQGTGLGLSVSYGIVKDHGGEIRLESEQGVGTTFIITLP 587 >gi|229515310|ref|ZP_04404770.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae TMA 21] gi|229348015|gb|EEO12974.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae TMA 21] Length = 597 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|57235045|ref|YP_180877.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] gi|57225493|gb|AAW40550.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] Length = 1061 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K + + + ++ L S + H+I +P+ I ELL +E+ + + ++ Sbjct: 815 KKLEQQLIMTDRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDVQTIHRE 874 Query: 60 AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDL 111 A+ L F R + D + + + ++ + ++ + + + Sbjct: 875 ALRAAEVVRNLLTFARQQTPTREAGDINLSIQKVLELRKHDHRINNIRCITELDPDLPRV 934 Query: 112 SRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +I L + + L ++TI K + S+ NG PE + Sbjct: 935 MLDVFQIQQVLINIIINAEFFLRLKEHPQITIKTSRRKGYAVISISDNGPGI-SPENIKR 993 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + E+ R+ E + L Sbjct: 994 IFDPFFTTKEVGKGTGLGLSICHGIIEEHHGRISAESTPGNGATFRIELP 1043 >gi|27804864|gb|AAO22901.1| histidine kinase [Myxococcus xanthus] Length = 830 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 26/238 (10%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 K + L ++ + A+ L + + H+I +P+ + +LE + + + Sbjct: 424 TKELQARLVAAERVAAVGTLAAGVGHEINNPLAYLVLNLEAAERGLSQGGMSGMRDAMAN 483 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ + F R G VD + ++I + R+ + Sbjct: 484 MRGALEGAERIRLIVRDLQVFSRQGNQDPGLVDLNALVPPAVRIISHALRHRARLVEEFG 543 Query: 106 GEKIDL--SRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLA 158 ++LLNL + A ++P G V+ + +G Sbjct: 544 PVPRVSGSEARLGQVLLNLLVNAMQAIPEGNPSMNEVRVRTSTDASGRARVDVVDSGAGI 603 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + L V S LL Sbjct: 604 -PAHVLPRIFEAFYTTKSSGEGTGLGLAICQQIVRAHGGELEVRSEPGRGSVFSVLLP 660 >gi|293553005|ref|ZP_06673650.1| sensor protein YycG [Enterococcus faecium E1039] gi|291602811|gb|EFF33018.1| sensor protein YycG [Enterococcus faecium E1039] Length = 611 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ + +E L + + +++ + I + + Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V+ ++ D+ ++ +R + + ++ Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T + ++ N I S+ G + F + + Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + E + L Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|257899653|ref|ZP_05679306.1| histidine kinase [Enterococcus faecium Com15] gi|293570842|ref|ZP_06681889.1| sensor protein YycG [Enterococcus faecium E980] gi|257837565|gb|EEV62639.1| histidine kinase [Enterococcus faecium Com15] gi|291609110|gb|EFF38385.1| sensor protein YycG [Enterococcus faecium E980] Length = 611 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ + +E L + + +++ + I + + Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V+ ++ D+ ++ +R + + ++ Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T + ++ N I S+ G + F + + Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + E + L Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|257885425|ref|ZP_05665078.1| histidine kinase [Enterococcus faecium 1,231,501] gi|257821281|gb|EEV48411.1| histidine kinase [Enterococcus faecium 1,231,501] Length = 611 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ + +E L + + +++ + I + + Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V+ ++ D+ ++ +R + + ++ Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T + ++ N I S+ G + F + + Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + E + L Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|257882230|ref|ZP_05661883.1| histidine kinase [Enterococcus faecium 1,231,502] gi|261208377|ref|ZP_05923027.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6] gi|289566830|ref|ZP_06447240.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecium D344SRF] gi|293567712|ref|ZP_06679055.1| sensor protein YycG [Enterococcus faecium E1071] gi|294616678|ref|ZP_06696448.1| sensor protein YycG [Enterococcus faecium E1636] gi|294619189|ref|ZP_06698675.1| sensor protein YycG [Enterococcus faecium E1679] gi|294623109|ref|ZP_06701995.1| sensor protein YycG [Enterococcus faecium U0317] gi|257817888|gb|EEV45216.1| histidine kinase [Enterococcus faecium 1,231,502] gi|260077438|gb|EEW65157.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6] gi|289161361|gb|EFD09251.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecium D344SRF] gi|291589647|gb|EFF21452.1| sensor protein YycG [Enterococcus faecium E1071] gi|291590432|gb|EFF22171.1| sensor protein YycG [Enterococcus faecium E1636] gi|291594571|gb|EFF25962.1| sensor protein YycG [Enterococcus faecium E1679] gi|291597478|gb|EFF28643.1| sensor protein YycG [Enterococcus faecium U0317] Length = 611 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ + +E L + + +++ + I + + Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V+ ++ D+ ++ +R + + ++ Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T + ++ N I S+ G + F + + Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + E + L Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|228933930|ref|ZP_04096773.1| hypothetical protein bthur0009_23900 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825626|gb|EEM71416.1| hypothetical protein bthur0009_23900 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 413 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLIKNSIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404 >gi|291288701|ref|YP_003505517.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885861|gb|ADD69561.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 484 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 84/228 (36%), Gaps = 17/228 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + K +++ +LV + L + + H++ +P+ AI + +++ + + I++ + Sbjct: 259 LRKT---AMNAENLVKMGRLSATVAHELKNPLVAIGGFTKRMEQTAVNPQTKNYIKIVQL 315 Query: 59 SAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + Y+ VD I + + + F ++ V+V+ + Sbjct: 316 EVHRLERIVGDILMYSRRVDLEISEFSLSSLVSEVIEFVRGCLCFSIIEVTVRVNPELKV 375 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++L+NL + + GG++T+ +S+ S+ G +K +I Sbjct: 376 HADRDRLRQVLMNLISNSVQEMTEGGELTVEASESERHVTLSVTDTGEGIPV-DKREKIF 434 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALLEK 215 + + + + ++ + V + +L K Sbjct: 435 EPFYTLKKTGTGLGLPLCKKIMAAHGGDIVVGDSGTGAGAVFTLILPK 482 >gi|227552547|ref|ZP_03982596.1| histidine kinase [Enterococcus faecium TX1330] gi|257888222|ref|ZP_05667875.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257896890|ref|ZP_05676543.1| histidine kinase [Enterococcus faecium Com12] gi|293378480|ref|ZP_06624643.1| PAS domain S-box [Enterococcus faecium PC4.1] gi|227178296|gb|EEI59268.1| histidine kinase [Enterococcus faecium TX1330] gi|257824276|gb|EEV51208.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257833455|gb|EEV59876.1| histidine kinase [Enterococcus faecium Com12] gi|292642809|gb|EFF60956.1| PAS domain S-box [Enterococcus faecium PC4.1] Length = 611 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ + +E L + + +++ + I + + Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V+ ++ D+ ++ +R + + ++ Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T + ++ N I S+ G + F + + Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + E + L Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2] gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2] gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2] Length = 499 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 18/233 (7%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ F ++ + + + K + Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISGIEIKSLLPDE 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ N A + N ++ G+ Sbjct: 380 DVYINTDITRLKQVICNFINNARKFTQKGYIYFGYTLDNRNANSVQIFVEDTGSGIPQEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + E + L Sbjct: 440 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDIFVESKIGEGSCFTVTLP 492 >gi|242372584|ref|ZP_04818158.1| two-component sensor histidine kinase [Staphylococcus epidermidis M23864:W1] gi|242349801|gb|EES41402.1| two-component sensor histidine kinase [Staphylococcus epidermidis M23864:W1] Length = 610 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 67/219 (30%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEGGAWQDESLAPQFLSVTREETERMIRLVNDLLQLSK 440 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ ++ ++ N+ Sbjct: 441 MDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 500 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 501 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599 >gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 622 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 KN +L + A + + H+I +P+ AI EL+ ++E M Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99 + M+ + ++ + + + + + ++ Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + S +++ NL A + G ++ F ++ G Sbjct: 504 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYAIQPDDQLRFYVRDTGIGID 563 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + + S +L Sbjct: 564 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619 >gi|255280824|ref|ZP_05345379.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469] gi|255268761|gb|EET61966.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469] Length = 895 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + + L A L I HD+ +P+ +I + L D+ E + Sbjct: 654 KEEAAIIAKNEQLRANLLRTISHDLRTPLTSISGNASNLLSNYRKLDDGARERIFTDIYE 713 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108 S + + + G V + +++V + ++VS E Sbjct: 714 DSMWLINLVENLLAVTRLEDGQVRLHQSVELMDEVVAEALRHTSRKSKSHTIRVSSAQEL 773 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I + ++L+NL A G + I + + S+ NG +K Sbjct: 774 ILAKIDARLVVQVLINLTDNAIKYTQEGSCIEIHTEQKDGWVVVSVSDNGPGIPDEQKMH 833 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + + + V + L Sbjct: 834 VFDMFYSGANKLADSRRSLGLGLSLCRSIVNAHGGTITVSDNHPEGTVFTFTLP 887 >gi|183179521|ref|ZP_02957732.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-3] gi|183012932|gb|EDT88232.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-3] Length = 597 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQHDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|172039318|ref|YP_001805819.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700772|gb|ACB53753.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 398 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 21/232 (9%) Query: 5 ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA 60 ++ L + S + HD +P+ I S LL++ + D+ + ++ + Sbjct: 152 QLLKAQELNQLKSEFVSILSHDFRNPLNTILLSAGLLEDSHDQLTRDQQLSYFQMIRQAV 211 Query: 61 IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + +D I + ++ VS+ GE Sbjct: 212 QDMNQLLSEVLLLGKADAGKLKPNFNELDIKQFCQQIIYSLHLSCEEKNQIMVSFKGELQ 271 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EK 163 + IL NL A P+GGK+ + + + F ++ G Sbjct: 272 GELWDEKLLWHILQNLLNNALKYSPQGGKIYVDIIAQEKTVTFRIQDQGIGISQESQKHL 331 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + V + ++ + + +L + Sbjct: 332 FEPFYRADNVENIAGTGLGLSIVRKCVEAYQGQIFVDSQLGKGTTFTVILPR 383 >gi|319653447|ref|ZP_08007547.1| hypothetical protein HMPREF1013_04164 [Bacillus sp. 2_A_57_CT2] gi|317394931|gb|EFV75669.1| hypothetical protein HMPREF1013_04164 [Bacillus sp. 2_A_57_CT2] Length = 412 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 71/217 (32%), Gaps = 13/217 (5%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAII 62 + L A+ + S + H++ +P+ A+ +L ++ +++ I ++ A Sbjct: 191 QTEKLAAVGQMASAVGHEVRNPLAALRGFTQLQMEKHPEDQDRYKIMIEEIDRINLIADD 250 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + V+ + + + E + RV+ + + + + Sbjct: 251 LMILSKPRLPLFKKVELNAVINYVISIIHEQAANQNIRVETENLEAVPKVQCDENMLKQS 310 Query: 122 LFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 + ++ + ++ + S+K G E ++VD + D Sbjct: 311 FINLIKNAMESMPEGGTILISAKVAEGDKVLISIKDEGCGI-DAENMERVVDPFYTTKPD 369 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+K + E +++ + Sbjct: 370 GTGLGLMVTKQIVDEHKAEITFESEKGIGTIVTLTIP 406 >gi|258621300|ref|ZP_05716334.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus VM573] gi|258586688|gb|EEW11403.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus VM573] Length = 597 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 68/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLTR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103 I + + ++ + S + + + + + +V Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + I + S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALDGQAERLVQIRLHISEQQVQIFVDDNGPGIGL- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + + + + + H + L L + Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIITLPR 590 >gi|228955709|ref|ZP_04117704.1| hypothetical protein bthur0006_50570 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803937|gb|EEM50561.1| hypothetical protein bthur0006_50570 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 672 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEDNAYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|229072923|ref|ZP_04206119.1| hypothetical protein bcere0025_50830 [Bacillus cereus F65185] gi|228710169|gb|EEL62147.1| hypothetical protein bcere0025_50830 [Bacillus cereus F65185] Length = 672 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEDNAYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 899 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + S L + + + H+I +P+ AI ++ E +E + + Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553 Query: 57 SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + L+ + +G + D + Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHPLCKEIHDAHVFRCPQGVELRFDSP 613 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ NL A G Q+ +F +K G PE Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQE-GERVVFYVKDTGLGI-EPE 671 Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 K ++ + + + + + L Sbjct: 672 KLGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|17228687|ref|NP_485235.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17130539|dbj|BAB73149.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 472 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 74/238 (31%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEVG----IEDEVMQ 51 +A+ + LS + + S + H++ +P+ +H L+ +L I+ E ++ Sbjct: 235 LAQTLTMLLSRLSQSWEQEREFVSNVSHELRTPLTIVHGYLQSVLRRQNNLTSIQQEALE 294 Query: 52 LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-V 102 + + I L+ + + + + +I + E + ++ Sbjct: 295 IAASEAERTIRLLQDLLDLARADSGYLYFQMKTYVLNDIVAEIVVMAEKYSDRLITIEST 354 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + E ++LLNL A + ++ ++ I + G Sbjct: 355 IFPIEVKVDYSRFKQVLLNLIDNAVKYSEADTPIIFNLDQLQDTAIIQVCDQGYGIPLQH 414 Query: 163 ---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + V L + + + + +L + Sbjct: 415 QARIFERFYRIDESRSQATGGCGLGLSIVKTLVEGMGGSVSVQSKLGEGSIFTIILPR 472 >gi|147669243|ref|YP_001214061.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] gi|146270191|gb|ABQ17183.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] Length = 852 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 17/226 (7%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62 + + L +L L + + H++ +P+ ++ EL+ E + +++ Q I++ S A Sbjct: 622 AQLMITDRLASLGELSAGLAHELNNPLTSVIGFSELIQEKILPEDLRQDIQIISQEAQRA 681 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER 115 L F R VD + + + + ++ + ++ + Sbjct: 682 AEIIRNLLTFARRHEPSKDWVDMNQIIHKVLAICNYGQKVHNIQLITNLDPNLPEIKADY 741 Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ L + + + IS + + S++ +G Sbjct: 742 FQMQQVLLNIVINAEYFMTQSHGEGTIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDP 801 Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +L E + + Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIEIP 847 >gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 925 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 29/238 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + S + L S + H+I +P+ AI ELL E D + +RL ++ Sbjct: 396 ARDRAESSSEAKMAFL--SHMSHEIRTPMNAIVGLSELLLEECPHDPQREQLRLIREASG 453 Query: 62 IRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 ++ + D + ++ V S Sbjct: 454 SLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAKRKGLVFSWDVAPSAQ 513 Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161 G + S ++L NL A + + F ++ G Sbjct: 514 GFFLGDSFRLRQVLWNLVGNAVKFTERGRVHVTAWGEQGEGGARKVHFRVQDTGIGILPV 573 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + + L +L V S L Sbjct: 574 NL-ERIFEYFSQGETLLHRRFPGTGLGLSISRHLVRAMGGEILVASEPGAGSVFSFSL 630 >gi|309790124|ref|ZP_07684697.1| GAF sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227849|gb|EFO81504.1| GAF sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1029 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L S L AL L S + HD + + +I +LL ++ ++ V++ + + Sbjct: 639 LQRTQEQLLHSERLRALGELASGLAHDFNNLLTSILGHAQLLLDITQDERVIEGLHIIEH 698 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK- 117 +A +R ++ + SL + + R + + + + Sbjct: 699 AARDGAATVRRLQNFSHTQRSLPDEEVVLDKVVIESLAMTRPRWRDAMQSNGIRLRVIQQ 758 Query: 118 ----------------ILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLA 158 ++ NL + A ++P GG + +Q + + G Sbjct: 759 FGDLPPMVGDGSALREVVTNLILNALDAMPHGGDLFLRTEQIQADPPIALLEVSDTGTGM 818 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 819 TPEVRQRAFDPFFSTKGAQGTGMGLAMAYGIVQRHHGTITIQSEPGKGTTFLIRLP 874 >gi|297570503|ref|YP_003691847.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926418|gb|ADH87228.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 898 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/236 (8%), Positives = 66/236 (27%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 + + ++ V LL + I HD + + A+ +++L + ++ + Sbjct: 520 EKELLKVKKLESVGLLAAGIAHDFNNLLTAVMGNIDLARFLLKKEQPDAEQLLNLLADSK 579 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111 + + A + + + L L + + F+ V + Sbjct: 580 KAGLRAQGLTQQLLTFARGGDPIRKLASLVAVIKDSAAFVLRGSGVSCEYQIADDLWLAE 639 Query: 112 --SRERAKILLNLFMVAHASLPRG-----------GKVTISVQDSKNENIFSLKINGNLA 158 + ++++ N+ + A ++ + ++ NG Sbjct: 640 IDQGQISQVIQNIVLNARQAMGENGRLLIGACNLAENEAPGPRRPGKFVAITISDNGPGI 699 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I D + + + + ++ + + LL Sbjct: 700 PQKD-QELIFDPYYTTKENGSGLGLAICHSIVSKHDGYIEIASEPGTGTTFTILLP 754 >gi|307154252|ref|YP_003889636.1| histidine kinase [Cyanothece sp. PCC 7822] gi|306984480|gb|ADN16361.1| histidine kinase [Cyanothece sp. PCC 7822] Length = 362 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 12/217 (5%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64 + ++ +L L +I H++ +P+ I E L + +V+ L + Sbjct: 147 QNEEIKSLEHLIHKIGHELRNPLSLISLMAENLRLSLAESQQKQVVSLQETITNLNQNLN 206 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAKI 118 + + + ++ + + I+ + + VS + + ++ Sbjct: 207 QLIDCSKRARLKLELCDLRYIVRKSIQSLNPIVESKAVSLQYPQDKEAIIAVDYLQIQQV 266 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 NLF A P GGK+ + Q + E I ++ G + I Sbjct: 267 FGNLFSNAIYFSPVGGKILCNWQFFQKEIIVTITDQGQGLSPQDLKN-IFTPFYSRRPGG 325 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ R+ E + + L + Sbjct: 326 TGLGLTIVQKIIMDHGGRIWAENLVLGGTKFTFTLPR 362 >gi|77408345|ref|ZP_00785086.1| sensory box histidine kinase [Streptococcus agalactiae COH1] gi|77173026|gb|EAO76154.1| sensory box histidine kinase [Streptococcus agalactiae COH1] Length = 449 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + +EV + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115 + T + I + + + + + + Sbjct: 270 IDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T++++ +K + I S+ G + F + + Sbjct: 330 TQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 ARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433 >gi|25010797|ref|NP_735192.1| sensory box histidine kinase [Streptococcus agalactiae NEM316] gi|76787924|ref|YP_329468.1| sensory box histidine kinase [Streptococcus agalactiae A909] gi|76798188|ref|ZP_00780439.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21] gi|77410782|ref|ZP_00787140.1| sensory box histidine kinase [Streptococcus agalactiae CJB111] gi|77413072|ref|ZP_00789273.1| sensory box histidine kinase [Streptococcus agalactiae 515] gi|23095151|emb|CAD46386.1| Unknown [Streptococcus agalactiae NEM316] gi|76562981|gb|ABA45565.1| sensory box histidine kinase [Streptococcus agalactiae A909] gi|76586451|gb|EAO62958.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21] gi|77160865|gb|EAO71975.1| sensory box histidine kinase [Streptococcus agalactiae 515] gi|77163161|gb|EAO74114.1| sensory box histidine kinase [Streptococcus agalactiae CJB111] gi|319744747|gb|EFV97089.1| sensor histidine kinase VicK [Streptococcus agalactiae ATCC 13813] Length = 449 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE + +EV + L R Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSR 269 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115 + T + I + + + + + + Sbjct: 270 IDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKM 329 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T++++ +K + I S+ G + F + + Sbjct: 330 TQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDK 389 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + + + +L Sbjct: 390 ARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433 >gi|303326613|ref|ZP_07357055.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3] gi|302862601|gb|EFL85533.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3] Length = 580 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 67/233 (28%), Gaps = 25/233 (10%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIG-------------------AIHNSLELLDEVG 44 L S + AL + + + H++ +P+ ++ N E+L+ Sbjct: 326 ARMLQSSKMAALGKMAAGVAHEVNNPLMLIQENAGWIRDLLEDEKPESMKNYQEVLESTE 385 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ ++ + + + + M + ++ + + + Sbjct: 386 KIEQHVKRAKGITQRMLGFGRRMNPSRTEILLNSLADQAVEMLKTEAASRNIVISKKFDP 445 Query: 105 TGEKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 I + ++ +N+ A ++ + G + I + + +G E Sbjct: 446 QLPVILSDPAQLEQVFINIIDNAIDAIGKDGSLRIRTEACEQGARIFFTDSGPGM-DEET 504 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + R+ + L Sbjct: 505 LKRIFDPFFTTKKVGEGTGLGLAICFTILEKLGGRIEVQSQPGQGTTFCITLP 557 >gi|228915261|ref|ZP_04078855.1| hypothetical protein bthur0012_24810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844378|gb|EEM89435.1| hypothetical protein bthur0012_24810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 413 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404 >gi|49477810|ref|YP_036752.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329366|gb|AAT60012.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 422 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVANK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413 >gi|312868823|ref|ZP_07729012.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3] gi|311095666|gb|EFQ53921.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3] Length = 617 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ ++H+ +E L + I + + +I+ + I + + Sbjct: 379 QFVSNVSHELRTPLTSVHSYVEALSDGAWKDKDIAPQFLTVIQNETNRMIRMINDLLSLS 438 Query: 68 ---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + E +R + Sbjct: 439 RMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKDENDQNSKKYTIERYFTDKDLWVEIDT 498 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +++ N+ A P GG +T + ++ N I S+ G + Sbjct: 499 DKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFR 558 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + I+ L Sbjct: 559 VDKARSRKQGGTGLGLAISKEVINLLGGQIWVDSIEGQGSTFYISLP 605 >gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 970 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 27/235 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57 + + M + S + H++ +P+ +I+ SL L+ + +++ + +S Sbjct: 478 SEQKRVELMK--SQFVSTVSHELRTPLTSINGSLGLIAGGAVGELPSQARQLVDIAYKNS 535 Query: 58 MSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 + + + + L+ + + + V + Sbjct: 536 QRLGYLINDLLDMEKIAAGKMRFDMILQELMPIVEQAMEANEAYGRQFNVTFALVERDDS 595 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L NL A +V I+V N+ ++ G PE Sbjct: 596 MLVRVDAQRLMQVLSNLLSNAAKFSASAERVEIAVMAQNNQVRVEVRDQGPGI-SPELQA 654 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L + V L Sbjct: 655 RLFTKFTQADSSDTRQKGGTGLGLAIAKELVERMGGTIGVHSEVGRGSVFFFELP 709 >gi|229184193|ref|ZP_04311402.1| hypothetical protein bcere0004_17570 [Bacillus cereus BGSC 6E1] gi|228599308|gb|EEK56919.1| hypothetical protein bcere0004_17570 [Bacillus cereus BGSC 6E1] Length = 293 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 71/234 (30%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 235 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + K Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVQKVLDLHRGEIKVESEEGNGTEFIVCIPK 289 >gi|47568102|ref|ZP_00238807.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241] gi|47555256|gb|EAL13602.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241] Length = 463 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 56/219 (25%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 ++ + L I + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPKLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + +H L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVNHGSCFIISLP 454 >gi|262051886|ref|ZP_06024101.1| two-component sensor histidine kinase [Staphylococcus aureus 930918-3] gi|259160213|gb|EEW45242.1| two-component sensor histidine kinase [Staphylococcus aureus 930918-3] Length = 608 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122 D + + + I + T + ++ N+ Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIMEAHNGRIWANSVEGQGTSIFITLP 597 >gi|229523944|ref|ZP_04413349.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae bv. albensis VL426] gi|229337525|gb|EEO02542.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae bv. albensis VL426] Length = 597 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 65/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQADRVVQIRLQTSEQQIALFVDDNGPGVGID 537 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + H + L + L + Sbjct: 538 TLP-HLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|229048377|ref|ZP_04193945.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676] gi|229147237|ref|ZP_04275594.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24] gi|228636246|gb|EEK92719.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24] gi|228723102|gb|EEL74479.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676] Length = 484 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103 + + + L + + + + ++ +S Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARF-- 160 + +++ NL + + + K + N+ I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ ++ E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGKIWAESELGKGTSIFFSLEK 478 >gi|90581396|ref|ZP_01237191.1| osmolarity sensor protein [Vibrio angustum S14] gi|90437373|gb|EAS62569.1| osmolarity sensor protein [Vibrio angustum S14] Length = 443 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 8/213 (3%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKF 66 + ALL + + HD+ +P+ I + E++ E + +++ + Sbjct: 226 QLEEDRALLMAGVSHDLRTPLTRIRLATEMMSPEDSYLAESMITDTEECNAIISQFMDYL 285 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 +D L D+ + ++ G + + + NL + A Sbjct: 286 KSTKKQEEEDLDLNTLLIDVAHTEGSYGKTIEQQLGEIPGMISANAVALKRAIANLVVNA 345 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDI 181 K++ + F ++ +G + S + + Sbjct: 346 QRYGKGWVKISSGASADRKSVWFCVEDDGPGIAPDQVNKMFQPLTRGDSARGSEAEGTGL 405 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ +L + + + L Sbjct: 406 GLAIVKRIVDQHDGVILVRNRSEGGLRVEVTLP 438 >gi|300867141|ref|ZP_07111807.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334896|emb|CBN56973.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 587 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 71/264 (26%), Gaps = 51/264 (19%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----------LL------- 40 + + + S + +L + + I H+I +PI IH ++E LL Sbjct: 322 LKQTQSQLIQSEKMSSLGQMVAGIAHEINNPINFIHGNIEHADGYIHDLMELLALYQQHY 381 Query: 41 ----DEVGIEDEVMQLI-----------------RLSSMSAIIRLKFMRLAFGYTGSVDS 79 +E+ + E ++L I F RL D Sbjct: 382 PEPVEEIQNQIEAIELDFLSEDLPKILSSMKIGADRIRELVISLRNFSRLDECEMKITDI 441 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFMVAHASLPR----- 132 G+ ++ + ++ + + ++ +N+ +L Sbjct: 442 REGIDSTLVILNYRLKHGIKIIKEYGELPPLNCYPAQLNQVFMNIISNGIDALEELGNSA 501 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190 + N ++ NG PE I D + + + Sbjct: 502 PTIWINAEVFESNCVKVKIRDNGPGM-PPEIQENIFDPFFTTKSIGKGTGLGLAISHQII 560 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 +++ + + L Sbjct: 561 TKHQGTIEVDSQPGEGTEFVITLP 584 >gi|228957070|ref|ZP_04118842.1| hypothetical protein bthur0005_6010 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802603|gb|EEM49448.1| hypothetical protein bthur0005_6010 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 463 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEILELHGGTITVTSEVDHGSCFIISLP 454 >gi|220904042|ref|YP_002479354.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868341|gb|ACL48676.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 673 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 65/227 (28%), Gaps = 19/227 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-----ELL---DEVGIEDEVMQLIR 54 + L AL L + + H++ +P+ I +L E ++ + Sbjct: 438 QADAQRNDRLSALGHLAAGVAHEVRNPLSTIKGVALYIAKRMLPGGREEEAAQRMIDEVD 497 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----I 109 L+F R T D +G ++ + + + V Sbjct: 498 RLDRVVSELLEFARPGAINTAEADLAEVIGRALRLA-EADMRSRHIHVVLDVPPGLPPVR 556 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + LLNLF+ A ++ GG++ + + ++ NG + I Sbjct: 557 VNTERLTQALLNLFLNAAQAMGEGGELRVGARLCSGGQTFCITVADNGPGI-ARDIQAAI 615 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + L Sbjct: 616 FTPYFTTKPSGTGLGLAIVHQIVEGHGGNVSVTSAPGRGTEFTLELP 662 >gi|103487938|ref|YP_617499.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis alaskensis RB2256] gi|98978015|gb|ABF54166.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis alaskensis RB2256] Length = 514 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 62/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45 + + + L A+ + S + H++ P+ AI N LE + Sbjct: 270 LKELQAELVHVSRLSAMGTMASTLAHELNQPLTAIANYLETTRDLVDGEGDIPRDILHEA 329 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101 E + F+ D + + ++ + Sbjct: 330 LTEAANETLRAGYIVRRLRDFVARGEVEKTVEDLPRLIDEAGKLALIGARERGVRSFFTF 389 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLA 158 + + ++L+N+ A ++ + V +++ +G Sbjct: 390 DPAATPTLVDRVQIQQVLVNIMRNAIEAMADSEVRELRVSTRLRADEMIEIAVEDSGPGI 449 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + ++ V S D + + + R+ E V L Sbjct: 450 -AEDVIPRLFQAFVSSKSDGMGLGLSICRTIVEAHGGRIWVEDGPGGGAVFRFTL 503 >gi|302343683|ref|YP_003808212.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640296|gb|ADK85618.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 892 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 74/243 (30%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIE-------DEVMQL 52 + + M+ + L + HD + + AI +EL L + + ++V++ Sbjct: 511 LLEAQLRQSQKMEAIGTLAGGVAHDFNNILSAIIGYVELALLDSAGDEALRGNLEQVLKS 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L + R + +G E ++ + D ++V+ + + Sbjct: 571 SWRARDLVAQLLAYSRKQLLSMSTFGLDEVVGRNEAMLRRIVGEDIDLEVNLSPFTGVVR 630 Query: 113 RERAKILLNLFM---VAHASLPRGGKV---------------TISVQDSKNENIFSLKIN 154 + +++ L A ++P GGK+ + + ++ N Sbjct: 631 ADVSQLEQVLLNLVANARDAMPTGGKITLETDNVHLDENYAARHAEATVGPHVMLAVSDN 690 Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + +I D + + V + ++ + Sbjct: 691 GPGM-DSQTQERIFDPFFTTKGAGKGTGLGLAMVYGIVKQHGGSIYVYSEPGQGSTFKIY 749 Query: 213 LEK 215 L + Sbjct: 750 LPR 752 >gi|239906598|ref|YP_002953339.1| sensor protein ZraS [Desulfovibrio magneticus RS-1] gi|239796464|dbj|BAH75453.1| sensor protein ZraS [Desulfovibrio magneticus RS-1] Length = 614 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 63/232 (27%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIED 47 + + L A+ L + + H+I +P+ +I ++ + Sbjct: 369 LREVRRLEAEVRRREKLAAVGNLAAGVAHEIRNPLSSIRGYAAYFGGKFDPGSEDRQAAE 428 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTG 106 +++ + + ++F R + V G ++I +A + V Sbjct: 429 IMVREVDRLNRVISELIEFSRPSDIQRRPVRLADLAGHAARLIRPDALARGVEIAVEDAP 488 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFPE 162 D+ + ++ + + ++ + + G E Sbjct: 489 GVPDVPADPDRLAQAVLNLCLNAVQAMDAGGTLGLRTGLAPDGRAYLEVTDTGRGIDPAE 548 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + + + + LL Sbjct: 549 R-DRIFDPYYTTKARGTGLGLPIAHKIVAAHGGEIRLTPRPEGGTSAMVLLP 599 >gi|229046907|ref|ZP_04192539.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676] gi|228724452|gb|EEL75777.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676] Length = 448 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELPK 448 >gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 870 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 60/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + L + L + + + H+I +P+ AI +LL + ++ I Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + G+ + + + + ++ + Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLKLPEN 754 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + + +++ NL A +G ++ ++ G Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGL 814 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + H + L Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGMITVASEEGHGTRFTVRLP 866 >gi|254507304|ref|ZP_05119440.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus 16] gi|219549764|gb|EED26753.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus 16] Length = 435 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 68/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIIGDTEECNEIISQFMD 279 Query: 66 FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ + VD D+ + + E + + + NL + Sbjct: 280 YLKPVNKQSFIEVDLNDIADDVASSEGGYEVQIETQLYHPMKETLGSPIAIKRAVSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + ++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSTGITADNKLVWVCVEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + Sbjct: 400 GLAIVKRIVSQHNGSVIVNNRSGGGLKVQISFP 432 >gi|329927385|ref|ZP_08281644.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328938524|gb|EGG34909.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 459 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 20/237 (8%), Positives = 62/237 (26%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + + + + H++ SP+ +I + L + + + Sbjct: 213 LARSFEDMMHELQQLEQMRREFVTNVSHEVQSPLTSISGYAQALKQVDLSDDERRRYLDI 272 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVS 103 I + + I + + A + ++ Sbjct: 273 IIAEAKRMSKMSDSLLKLSLLESQSQQLGLSTLSLDEQIRRVIVALQPQWAARSIQFELD 332 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 K+ ++ ++ N+ + G + +SV+ N + G + Sbjct: 333 LQAVKVTADHDQLNQVWTNIIGNSIKFSKDAGVIHVSVKQDMNHVTVRISDAGIGISLED 392 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L+ ++ + E L Sbjct: 393 QKRIFERFFKTDRSRSRKFEGSGMGLAIVKLIVSLHQGDIRVESEPGQGATFIVTLP 449 >gi|328949780|ref|YP_004367115.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] gi|328450104|gb|AEB11005.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] Length = 368 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 48/215 (22%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMR-------- 68 L + H++ +P+ A+ E L + + Q I + + + Sbjct: 150 LIGTVAHELRTPLAALQGYAEALADGVMPPERAAQAIAREVSAMRRLVNDLSLVSRVEAG 209 Query: 69 ----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 V L ++L NL + Sbjct: 210 AIEVHPVSVAPRVLLEEALDRFAPAFAQKGVRLLLEAPEEMPWVQADPERVQQVLSNLLV 269 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179 A P GG V + + + F ++ G F + + Sbjct: 270 NALRHTPSGGTVVLGARVEGDAVRFHVRDTGPGIPPEHQPRVFERFYRVDPARSRSAGGS 329 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L R+ E L Sbjct: 330 GVGLTIARGLVEAMGGRIGLESAPGRGAEFFFTLP 364 >gi|325109467|ref|YP_004270535.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324969735|gb|ADY60513.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1506 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 22/231 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56 + + + + A + S HD+ +P+ I + L E DE + I Sbjct: 1270 RALERTNAELKEFAYVAS---HDLQTPLRGISGFAQFLKEDYEGKLDEQADEYLSRISDG 1326 Query: 57 SMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + +K + SVD L D+ + V Sbjct: 1327 AQRMQRLIKDLLAYSQVDLTSSAFASVDLNTLLDDVIGYLRPAIETSAADVTAERLPTVQ 1386 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIV 168 S + ++ NL + + V ++ + E + ++ NG PE +I Sbjct: 1387 GNSTQLFQLFQNLVSNSLKYRNQEHTVIQISAEEREEEWVIGVRDNGIGI-APEHHDRIF 1445 Query: 169 DGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + E +D+ L K Sbjct: 1446 QIFRRLHTQKEYEGTGVGLALCRRIVERHGGEIWVESDEDNGCCFKFTLPK 1496 >gi|307297523|ref|ZP_07577329.1| multi-sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916783|gb|EFN47165.1| multi-sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 903 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 17/228 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +N+ L L AL + +R+ H+I +PI I ++ + + + ++ Sbjct: 663 RRNLEQELKGREKLAALGEMSARVAHEIRNPITIIGGFVKRILASSDRKKTEEYAKILMD 722 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWTG 106 + + + + I Sbjct: 723 ELQRLDRIVGEVLEVSRRKAKPSKEAFDLVSMTREILAGFEEKAASENVKLVLYTKEERI 782 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 E + ++++NL A + G +V ++++ E FS G E + Sbjct: 783 EYYGNRDKIKQVIINLVQNAIEASESGDEVHVTLEKDSEEIRFSAWNGGKTI-PEETLKR 841 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + E+ + V + L Sbjct: 842 IFEPFFTTKTLGTGLGLSICKKIVEEHGGSIHA-SSGSEGTVFTFRLP 888 >gi|262192154|ref|ZP_06050314.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae CT 5369-93] gi|262031943|gb|EEY50521.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae CT 5369-93] Length = 597 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 66/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQHDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|257059382|ref|YP_003137270.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589548|gb|ACV00435.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 389 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSM-------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + K + + L + S + HD +P+ I S LL++ G + Q I Sbjct: 142 LEKRVEERTKQLIKAQELNQLKSEFVSMLSHDFRNPMNTILLSAGLLEDSGDQLTREQQI 201 Query: 54 RLSSMSAIIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 M ++ F + L Q+ Sbjct: 202 SYFQMIRTAIKDMDQLLSEILLLGKADAGKLQGHFEELDLEELCHRLLHSLQLSAHHNHE 261 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + I+ NL A P GGKV + + +NE IF ++ G Sbjct: 262 IIFQSKGEFSRGLWDEKLLRHIINNLLNNALKYSPEGGKVNFDLIEKENEVIFRVQDQGI 321 Query: 157 LARFP---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + I + V + +L + + + +L Sbjct: 322 GISPEAQKQLFQPFYRADNVNNIPGTGLGLAIVQKCVEAHYGTILVDSQEGIGTTFTVIL 381 Query: 214 E 214 Sbjct: 382 P 382 >gi|220925300|ref|YP_002500602.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949907|gb|ACL60299.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 571 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 72/244 (29%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELL--------------- 40 + + + + +L L + I H+I +P+ I ++E L Sbjct: 326 LKDAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLIGEVANEAGDLSGEA 385 Query: 41 -----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 + + + KF RL G SV+ + + +I+ + Sbjct: 386 KAALAKARDRIGSMRLGLTRIQDLVVNLRKFSRLDEGELRSVNVPEAIETVLALIQHKLG 445 Query: 96 VDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 V+ + E ++++N+ A ++P G++TI + ++ + Sbjct: 446 TRITVERRFKGEPEICCTPALLNQVVMNVIGNAADAIPGEGRITIETRSEAGNDVIRISD 505 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G +I + + + + + + E Sbjct: 506 TGPGV-PEALRERIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGTISVETAPGGGACFVI 564 Query: 212 LLEK 215 + + Sbjct: 565 SIPR 568 >gi|197122987|ref|YP_002134938.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172836|gb|ACG73809.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 654 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 19/232 (8%), Positives = 66/232 (28%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51 ++ + L ++ + + + H++ +P+ I L + + + Sbjct: 420 ERSERQLRETEKLASIGEMAAGLAHELNTPLSNIRALASLAKRDLEAGPADPRALSQDLA 479 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG-------DIEQVIEDFIAVDKRVQVSW 104 + + ++ + + + ++ ++ + V Q Sbjct: 480 DVTEQTRRCSAIIQGLLRFARRQPPALAAHDVDGLVRGALELVRLRAEGKGVALAFQPGP 539 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + ++ +NL + A + GG+V +S + + +G Sbjct: 540 ARPAVVDAAQLEQVFVNLLLNAIDASGPGGRVEVSTGAADGRVSVRVTDHGAGIDPAHLP 599 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + L + + L Sbjct: 600 -RIFDPFFTTKEVGQGTGLGLSVSYGIVRSHGGALRVDSAPGRGATFTVELP 650 >gi|119493256|ref|ZP_01624096.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119452729|gb|EAW33907.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 491 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 62/215 (28%), Gaps = 18/215 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ + L+ L + E +++ + I L+ + Sbjct: 274 QFVSNVSHELRTPLTIVQGYLQSTLRRGNNLTPPQREGLEVAANEAERTIRLLQDLLELA 333 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + L ++ ++ + ++ T + ++LLNL Sbjct: 334 RADHGNLHFQIEPFEVNSLLSEVREMAQQFSQGRVHLEKIQGTIQVQADRNRLKQVLLNL 393 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES-TIDS 178 A +T+ V+ + + S+ G F + + Sbjct: 394 IDNAIKYSEPEQPITLKVKQTDKKVYLSVCDQGQGIPLQHQSRIFERFYRVDEARTRAGG 453 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + R+ + + +L Sbjct: 454 TGLGLSIVKTIVEGMGGRVTLLSKPGEGSIFTVIL 488 >gi|116871682|ref|YP_848463.1| two-component sensor kinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740560|emb|CAK19680.1| two-component sensor kinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 610 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L + D + D ++++ + KR + ++L N Sbjct: 443 MDGGREHLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEISIADEGLGVPEEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E V+ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTVIKFTLP 600 >gi|86361054|ref|YP_472941.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86285156|gb|ABC94214.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 797 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 47/236 (19%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + L L S H+ +P+ I + + L L + Sbjct: 547 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLCEKAD 606 Query: 58 MSAI----------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ +IG+ Q Sbjct: 607 QIRSSVSRMLELMESILAAGRLDHGRITIVHKPCSIAEIIGICSARQESIRRSHRFLLDL 666 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ NLF A P V ++ +++ G Sbjct: 667 DRLPPTIFGDHPALDQVFSNLFSNAVKYAPDAPNVHVTGWQDGTSVCITVRDEGIGIDTD 726 Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + + + + L Sbjct: 727 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIIELHGGTIEVASSRGNGTTFTLRLP 782 >gi|262382235|ref|ZP_06075373.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262297412|gb|EEY85342.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 846 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 65/233 (27%), Gaps = 22/233 (9%) Query: 2 AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + L + L + + + H+I +P+ AI ++ E+ E E + + Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + L+ + VD G+I + D + Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVDLIFDLDS 592 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + +++ N A +G + + +K G E Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + ++ + + ++ + + L Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGGGSTFWFTLP 703 >gi|228921785|ref|ZP_04085101.1| hypothetical protein bthur0011_27810 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837867|gb|EEM83192.1| hypothetical protein bthur0011_27810 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 801 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKIQHNDISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDEGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNKGTIVEVTLP 795 >gi|218246336|ref|YP_002371707.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|218166814|gb|ACK65551.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] Length = 389 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSM-------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + K + + L + S + HD +P+ I S LL++ G + Q I Sbjct: 142 LEKRVEERTKQLIKAQELNQLKSEFVSMLSHDFRNPMNTILLSAGLLEDSGDQLTREQQI 201 Query: 54 RLSSMSAIIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 M ++ F + L Q+ Sbjct: 202 SYFQMIRTAIKDMDQLLSEILLLGKADAGKLQGHFEELDLEELCHRLLHSLQLSAHHNHE 261 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + I+ NL A P GGKV + + +NE IF ++ G Sbjct: 262 IIFQSKGEFSRGLWDEKLLRHIINNLLNNALKYSPEGGKVNFDLIEKENEVIFRVQDQGI 321 Query: 157 LARFP---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + I + V + +L + + + +L Sbjct: 322 GISPEAQKQLFQPFYRADNVNNIPGTGLGLAIVQKCVEAHYGTILVDSQEGIGTTFTVIL 381 Query: 214 E 214 Sbjct: 382 P 382 >gi|197122291|ref|YP_002134242.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|220917074|ref|YP_002492378.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|196172140|gb|ACG73113.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|219954928|gb|ACL65312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 502 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + A+ + + + H+I +P+ + +LELL E +D I + Sbjct: 265 RERMVRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSDDARHSDIVTEMQHQVR 324 Query: 63 --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 L F R A S D L + +I V + Sbjct: 325 RLTHTMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQSRDGTLELVPELSPGLPAVLA 384 Query: 111 LSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ LN+ + A ++ ++T+ + ++ G + QI Sbjct: 385 DPSQLEQVFLNICLNACQAMIATRRGGRLTVRSRAGDGTVSVEVEDTGPGI-PADLRAQI 443 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ + + + L+ Sbjct: 444 FKPFFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQ 490 >gi|170738596|ref|YP_001767251.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168192870|gb|ACA14817.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 573 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/244 (8%), Positives = 65/244 (26%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELL------DEVGIEDEV 49 + + + + +L L + I H+I +P+ I ++E L G+ + Sbjct: 328 LKDAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLVGEVAEQAEGLPEPA 387 Query: 50 MQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93 + + + + + +V I + Sbjct: 388 RRALAKARDRIGAMRLGLGRIQDLVVNLRKFSRLDEGEMRSVNVPDAIETVLALLQHKLG 447 Query: 94 IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + + E ++++N+ A ++P G++T+ ++ + Sbjct: 448 TRIAVERLFAGEPEIRCTPALLNQVVMNIIGNAADAIPGEGRITVETLSEAENDVIRISD 507 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G +I + + + + + + E Sbjct: 508 TGPGV-PEALRERIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGTISVETAPGGGACFVI 566 Query: 212 LLEK 215 + + Sbjct: 567 SIPR 570 >gi|23014024|ref|ZP_00053865.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 488 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 13/225 (5%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIR 54 + + L S AL + + + H++ +P+ I N L + + + + I Sbjct: 254 KQRLERELAQSEKSAALGRIAAGVAHEVNNPLAGILNCLSTIKDHPEQPDLVTRYLPPIE 313 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109 ++ + + + + D + + + + W Sbjct: 314 KGLHRIRAIVQDLLVEQRAEHASELCGPECLDELRDLIIAEIEGAGITLDWDNRVHAPVQ 373 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + +LNL A ++P GG + S ++ G + I D Sbjct: 374 VNRPRLQQAVLNLLKNAAQAMPDGGCLKFSASLDGGLLRMEIEDTGIGIAEEDLR-HIFD 432 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + L + + + S + Sbjct: 433 PFFSSKKSGTGLGLWITLRLLNSMGGGVEVTSEPGKGSIFSLHVP 477 >gi|300853702|ref|YP_003778686.1| putative sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300433817|gb|ADK13584.1| predicted sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 376 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + +I + D +L S I HD+ +PI +I +E +LD V E +Q + S Sbjct: 123 LKNSIHMKMKYDDNRKMLVSSISHDLKTPITSIKGYVEGILDGVANTPEKLQHYLRTIYS 182 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------------- 105 ++ M +D + E+ D + S+ Sbjct: 183 KSQQIDKMIDDLLLYSKLDLNQIPFNFEKTDIISYFTDCTQECSFELNKSNITISLKNNL 242 Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160 + +++LN+ + + +I + +N ++ G Sbjct: 243 NKSKYVMIDRERFMRVVLNIINNSKKYMGDTKNGSILIDLRENNASIIIEIKDTGCGIDK 302 Query: 161 PEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + +K ++ + ++ L K Sbjct: 303 NHINKIFDRFYRTDSARTETKGSGLGLAIAKQIVEGHKGKIWAVSEEGSGTSITISLPK 361 >gi|288818393|ref|YP_003432741.1| sensor histidine kinase [Hydrogenobacter thermophilus TK-6] gi|288787793|dbj|BAI69540.1| sensor histidine kinase [Hydrogenobacter thermophilus TK-6] gi|308751985|gb|ADO45468.1| histidine kinase [Hydrogenobacter thermophilus TK-6] Length = 329 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69 + + H++ +PI I + LE + E ++ +L+ + + Sbjct: 111 FVANVSHELKTPIAIIKSILETIIEEEKDEGKRRLLERALKRTEDLRNIVEDLLIITKLE 170 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + + D+ + I I V+ +V + + +LLNL Sbjct: 171 SGEEKLHKKMLNAKELVSVVFDMLREIAQNINVELINEVDENTKVYADEDKLNLLLLNLV 230 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTIDS 178 A GGKV + + K I + G P F + + + Sbjct: 231 DNAIKYNKEGGKVVVKARTEKGYVILEVSDTGIGIPKEHIPFIFERFYRVDRSRSRELGG 290 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + ++ E + L Sbjct: 291 TGLGLSIVKHIALSHGGKVEVESKEGEGSTFRVYLP 326 >gi|229184875|ref|ZP_04312066.1| hypothetical protein bcere0004_24330 [Bacillus cereus BGSC 6E1] gi|228598528|gb|EEK56157.1| hypothetical protein bcere0004_24330 [Bacillus cereus BGSC 6E1] Length = 413 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISIEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404 >gi|157963903|ref|YP_001503937.1| histidine kinase [Shewanella pealeana ATCC 700345] gi|157848903|gb|ABV89402.1| histidine kinase [Shewanella pealeana ATCC 700345] Length = 706 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 71/234 (30%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++ELL D +E ++L+ Sbjct: 446 LNETRQQLVINEKLTALGELTAGIAHEINNPTAVILGNMELLKYELGDRAADVEEEIELV 505 Query: 54 RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + + + + V +++ Sbjct: 506 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIQKQQVVLNQELNA 565 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159 + + ++L+NL + A ++ G++ I D ++ G Sbjct: 566 SYPIQVNRPQLLQVLINLVVNAAHAMNGKGQIWIRTYDWVQRGEPVGVKIEVEDEGKGIP 625 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I D + D + + + + + L Sbjct: 626 EEELN-RIFDPFFTTRKDGTGLGLSLSYGIIKRIGGTIEVNSTVGKGSLFTIGL 678 >gi|118478027|ref|YP_895178.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam] gi|196043380|ref|ZP_03110618.1| sporulation kinase B [Bacillus cereus 03BB108] gi|225864628|ref|YP_002750006.1| sporulation kinase B [Bacillus cereus 03BB102] gi|118417252|gb|ABK85671.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam] gi|196025689|gb|EDX64358.1| sporulation kinase B [Bacillus cereus 03BB108] gi|225790003|gb|ACO30220.1| sporulation kinase B [Bacillus cereus 03BB102] Length = 422 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISIEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413 >gi|91203081|emb|CAJ72720.1| similar to two component histidine kinase phoR [Candidatus Kuenenia stuttgartiensis] Length = 595 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 63/220 (28%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL-------- 64 + + H++ +P+ +I +E L E G +++I + + Sbjct: 364 FVANVSHELRTPLTSIRGYVETLLENYAAGGGHTYNSLKVIMKHTQRLDNLIKDILELSK 423 Query: 65 ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILL 120 +++ + + + + + R+ +S ++L Sbjct: 424 LETNELKMELHELNIYECIEDILHTYKEHCEEKKQSFRLHISQNLPTVESNEYLLRQLLT 483 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A G + +S+ ++ + G E +I + Sbjct: 484 NLLDNAIKYTHESGDIRLSISPAEETIQIEVSDTGIGI-PHEHIPRIFERFYRIDPARSR 542 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + + +L Sbjct: 543 EMGGTGLGLSIVKHIVNLHNGAIKLKSTVGKGSTFTVILP 582 >gi|314939996|ref|ZP_07847191.1| PAS domain S-box [Enterococcus faecium TX0133a04] gi|314950768|ref|ZP_07853844.1| PAS domain S-box [Enterococcus faecium TX0133A] gi|313597048|gb|EFR75893.1| PAS domain S-box [Enterococcus faecium TX0133A] gi|313640766|gb|EFS05346.1| PAS domain S-box [Enterococcus faecium TX0133a04] Length = 599 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 67/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ + +E L + + +++ + I + + Sbjct: 369 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 428 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V+ ++ D+ ++ +R + + ++ Sbjct: 429 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 488 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T + ++ N + S+ G + F + + Sbjct: 489 VDNIMNNAIKYSPDGGTITCRLLETHNNVVLSITDQGLGIPKKDLNRVFERFYRVDKARA 548 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + E + L Sbjct: 549 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 588 >gi|307635113|gb|ADI85671.2| sensor histidine kinase, HAMP domain-containing, nonconserved putative heme-binding site [Geobacter sulfurreducens KN400] Length = 496 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 67/234 (28%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53 + + + D L ++ + + I H+I +P+ I ++ ++ E E++ + Sbjct: 254 LEQYHFQQMERADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEV 313 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK 108 + + T + L D+ ++ + ++ Sbjct: 314 IEQVNRLDKTVNDLLFFGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPL 373 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLARF 160 + + ++ + + ++ + I+ ++ + G Sbjct: 374 PLVFVDPKQVQQVVLNLILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGI-P 432 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I + + L ++ L + + V S L Sbjct: 433 EPIISKIFTPFFTTKAQGTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 486 >gi|271968771|ref|YP_003342967.1| signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] gi|270511946|gb|ACZ90224.1| Signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] Length = 1051 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 62/235 (26%), Gaps = 25/235 (10%) Query: 2 AKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMS 59 + L S I H++ +P+ I L ELLD+ + + ++R + + Sbjct: 307 RRTRELAELDDAKTA--FFSNISHELRTPLALILGPLQELLDDPSLGSDQHTVLRTARRN 364 Query: 60 AIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------- 104 A+ + ++ F + + V ++ Sbjct: 365 AMRLLTLVNDVLDFTSVDSGRTRARYQPTDLTAQTAELAGVFRSSMESVGLTLRVEGEPL 424 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 +I+ NL A GG + ++ G E Sbjct: 425 PEPVHLDRHMWERIVFNLLSNALKHTFAGGVTVGVRPGEGHAV-VTVSDTGVGIPGHEIP 483 Query: 164 --FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + + I L + R+ + + L Sbjct: 484 NLFERFHRVSGSPSRSHEGTGIGLALARELIALHGGRIEADSRLGEGTTFTITLP 538 >gi|229013875|ref|ZP_04171003.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048] gi|228747544|gb|EEL97419.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048] Length = 484 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + V + + ++ +S G ++ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVYLQLQS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + L+K Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478 >gi|229169400|ref|ZP_04297110.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621] gi|228614163|gb|EEK71278.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621] Length = 484 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + V + + ++ +S G ++ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVYLQLQS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + L+K Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478 >gi|229171431|ref|ZP_04299016.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3] gi|228612135|gb|EEK69372.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3] Length = 421 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIALKENTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 260 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 261 QMEQHNFSIQVKEVYLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLLINLDEQRFEQVVV 320 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + + ISV + +++ G + Sbjct: 321 NILNNAYRHSQKHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 380 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 419 >gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 609 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 63/219 (28%), Gaps = 21/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69 + + H++ +P+ + + LE L + + +Q+++ + I + + Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKDIAPRFIQVVQNETERMIRLVNDLLHLS 438 Query: 70 ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILL 120 + + + ++ + ++L Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDNIRFVRKIPREAIFIEVDEDKITQVLD 498 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 N+ A P+GG +T V+ +E I S+ G + F + + Sbjct: 499 NIISNALKYSPQGGTITFRVRKLADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + + L Sbjct: 559 LGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLP 597 >gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO] gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408] gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO] gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162] gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082] gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO] gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408] gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162] gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082] Length = 611 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 67/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ ++ + +E L + + +++ + I + + Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V+ ++ D+ ++ +R + + ++ Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173 + N+ A P GG +T + ++ N + S+ G + F + + Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVVLSITDQGLGIPKKDLNRVFERFYRVDKARA 560 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + E + L Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|328954079|ref|YP_004371413.1| GAF sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328454403|gb|AEB10232.1| GAF sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 784 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61 L S L A+ + + H+I +P+ +I + + ED + Q + + Sbjct: 541 RERMLESDRLAAMSSMAEGLAHEIRNPLVSIGGFARRISKQVASEDPIRQYVDVIVDEVG 600 Query: 62 IRLKFMRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 K +R F + D + D +I+ + D V E + + Sbjct: 601 RLEKILRQMFDFTGDAIGHFQEHDLNKLVADALTLIQRDLDRDNIRVVKQYAELPLVFCD 660 Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167 + + ++F A ++ GG +TI ++ G PE I Sbjct: 661 DRQIKLVFYHIFQNAQQAMGSGGTLTIHTFPLEKSDGLYAAIAVSDTGGGI-PPELVHNI 719 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 720 FNPFFTTKEMGTGLGLSIAQRIVARHYGDIEINNELGKGITFTVTLP 766 >gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] Length = 869 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + ++ L + I H++ +P+ I + +E + + + + L Sbjct: 348 MRRRLEEEATNAKL--QFFTNISHELRTPLTLIADPVEHIIDDNNLTRQQRNMLLIVRRN 405 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWT 105 + L + + + + + + Sbjct: 406 VNVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELHAASP 465 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +I NL A P GG++T S + + G E Sbjct: 466 LSIRADIYKVERICYNLLSNAMKYTPEGGRITFSAVTEGDFVHIGVTDTGIGMTRDEAAH 525 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V A +K + E + L Sbjct: 526 VFERFYQVRHPHKGGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLP 576 >gi|229162131|ref|ZP_04290102.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803] gi|228621338|gb|EEK78193.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803] Length = 448 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ + S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELPK 448 >gi|262169261|ref|ZP_06036953.1| signal transduction histidine kinase [Vibrio cholerae RC27] gi|262022074|gb|EEY40783.1| signal transduction histidine kinase [Vibrio cholerae RC27] Length = 570 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 185 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 244 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 305 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 364 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLYIP 428 >gi|255745823|ref|ZP_05419771.1| signal transduction histidine kinase [Vibrio cholera CIRS 101] gi|262153458|ref|ZP_06028589.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1] gi|255736898|gb|EET92295.1| signal transduction histidine kinase [Vibrio cholera CIRS 101] gi|262030759|gb|EEY49392.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1] Length = 570 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 185 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 244 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 305 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 364 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLYIP 428 >gi|229523471|ref|ZP_04412876.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis VL426] gi|229337052|gb|EEO02069.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis VL426] Length = 572 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|313500603|gb|ADR61969.1| Multi-sensor signal transduction histidine kinase [Pseudomonas putida BIRD-1] Length = 989 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 736 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGEIIELSS 795 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + S + F + + + + V Sbjct: 796 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 855 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A++L+NL A + P G V + + +++ ++ G+ Sbjct: 856 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVNEHTVDLIVEDEGSGIPKN 915 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 916 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 974 >gi|301309870|ref|ZP_07215809.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300831444|gb|EFK62075.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 622 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 KN +L + A + + H+I +P+ AI EL+ ++E M Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99 + M+ + ++ + + + + + ++ Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + S +++ NL A + G N+ F ++ G Sbjct: 504 EKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYVRDTGIGID 563 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + + S +L Sbjct: 564 KDKLKDVFGRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619 >gi|266619603|ref|ZP_06112538.1| sensor histidine kinase [Clostridium hathewayi DSM 13479] gi|288868825|gb|EFD01124.1| sensor histidine kinase [Clostridium hathewayi DSM 13479] Length = 498 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +N + L S I HD+ +PI AI +E + + E + + + Sbjct: 253 LKENAEEKIQYDKENKELISNISHDLKTPITAIKGYVEGIMDGVASSPEKLDRYIRTIYN 312 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102 + + + +D+ ++ D V Sbjct: 313 KANDMDKLIDELTFYSKIDTNKIPYTFSKINVASYFRDCVDEVGLEMEARNIELGYFNYV 372 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + + +++ N+ + + + + I ++D + ++ NG Sbjct: 373 DEDVMVIADAEQMRRVINNIVSNSVKYIDKKNGIINIRIKDVGDFIQIEIEDNGKGIAAK 432 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ R+ + + +L K Sbjct: 433 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEIHFVLRK 491 >gi|291612484|ref|YP_003522641.1| multi-sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291582596|gb|ADE10254.1| multi-sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 712 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 67/225 (29%), Gaps = 20/225 (8%) Query: 9 LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMS 59 L + A + R+ H+I +P+ I S E L + + + + Sbjct: 480 LQAERQAAWGEVARRLAHEIKNPLTPIQLSAERLQHKLLGKLDEHDSQLLQRATQTIVSQ 539 Query: 60 AIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + Y ++D L ++ + E + + + Sbjct: 540 VAAMKNMVTEFANYARAPAARMVALDIHQLLNEVMGLYEANSSPITLQLNAHRTWLNGDA 599 Query: 113 RERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++ NL AH +L + I + + ++ NG+ ++ + Sbjct: 600 TRLRQVIHNLLQNAHDALQQTEHPMIVLSTENTTNGTLKLIVRDNGSGIPEHMLG-RLFE 658 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + E+ ++ E +S L Sbjct: 659 PYMTTKQKGTGLGLAIVKKIVEEHGGKITIESQPLAGTRISVELP 703 >gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] Length = 509 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 18/226 (7%), Positives = 55/226 (24%), Gaps = 28/226 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + + + H++ +P+ AI E+L + ++ + + I +L Sbjct: 274 MFLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDI 333 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------------------ 118 +D + + + ++ + L ++ Sbjct: 334 LDLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKF 393 Query: 119 ---LLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----- 168 NL A + ++ +++ G ++ Sbjct: 394 RQIFTNLLSNACKFTNAGYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQA 453 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + E + + LL Sbjct: 454 DASTSANYGGTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLP 499 >gi|111021713|ref|YP_704685.1| sensor kinase, two-component system [Rhodococcus jostii RHA1] gi|110821243|gb|ABG96527.1| sensor kinase, two-component system [Rhodococcus jostii RHA1] Length = 460 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59 A S + + H++ +P+ I EL + + D M I + Sbjct: 228 ASEESARRSEEKMR-RFVADASHELRTPLTTIRGFAELYRQGAMTDTETLMSRIEGEASR 286 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108 + ++ + + D+ V D + + V T E Sbjct: 287 MGLLVEDLLMLARLDAQRPLETRPVDLLSVASDAVHGARAVAPDRSIALDVRPGPGTPEV 346 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 I ++L NL A P VT+ + ++ + + G + F Sbjct: 347 IGDEARLRQVLGNLLANAVKHTPATADVTVRLSTTERSVVLEVADTGPGLSEEDAARVFE 406 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V L ++ + + L + Sbjct: 407 RFYRTDASRTRESGGSGLGLSIVAALVAAHRGSVTVDSRPGEGATFRVELPR 458 >gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 587 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 58/227 (25%), Gaps = 26/227 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFM 67 ++ + + H++ +P+ I E L + + + + + + A + Sbjct: 356 EEMRRDFVANVSHELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLI 415 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------ 115 + L + IA + EK Sbjct: 416 NDILTLSCLEARNSALELNAMDVGTTIAKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQ 475 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++L+NL A P GG + + + + S++ +G + +I + Sbjct: 476 GRLEQVLVNLIDNAVKYTPEGGTIRLFAEQGETFLRISVQDSGIGIPPRDLP-RIFERFY 534 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + L S L Sbjct: 535 RVDEGRSREQGGTGLGLAIAKHIVQLHGGELTVTSTPGKGSTFSFTL 581 >gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 540 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + + + ++ + + H+I +P+ I LELL + ++ + + +R+ Sbjct: 131 LREELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQTDLDPQQEEYLRIV 190 Query: 57 SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIE-DFIAVDKRVQVSW 104 SA + F+ Y+ D + +G + ++ + Sbjct: 191 RESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALRAREKGLETVLDL 250 Query: 105 TGEKIDLSR----ERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGN 156 + R +IL NL A +G +D F + G Sbjct: 251 DPQVPPRVRGDPLRLRQILTNLLDNALKFTEKGWIALSIRRFPPEDGGLWLEFGVVDTGI 310 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 EK +I G + V + L E + Sbjct: 311 GI-PREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLSLESEEGKGSSFH 369 Query: 211 ALLE 214 L Sbjct: 370 VRLP 373 >gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 899 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + S L + + + H+I +P+ AI ++ E +E + + Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + G V +I ++ Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163 E + + ++ +I + + + V+ + +F +K G PEK Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + L Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 899 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + S L + + + H+I +P+ AI ++ E +E + + Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + G V +I ++ Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163 E + + ++ +I + + + V+ + +F +K G PEK Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + L Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 899 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + S L + + + H+I +P+ AI ++ E +E + + Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + G V +I ++ Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163 E + + ++ +I + + + V+ + +F +K G PEK Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + L Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|288553298|ref|YP_003425233.1| sporulation kinase [Bacillus pseudofirmus OF4] gi|288544458|gb|ADC48341.1| sporulation kinase [Bacillus pseudofirmus OF4] Length = 619 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 69/221 (31%), Gaps = 8/221 (3%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56 M + S L L + I H+I +P+ + +L + D +M + Sbjct: 392 MKNRDDLLIRSEKLALAGELAAGIAHEIKNPLTTLKGFFQLTESQLEPYRDVLMHELNQI 451 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSR 113 + L R VD L + + I+ + +Q+ + Sbjct: 452 NDIIEELLLVARPRAIKEEEVDLLNVIRESLTSIDTEIQLKNITLDLQLCDEAYLLCAPH 511 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ +NL A ++ G ++I+V+ +K G + ++ + Sbjct: 512 QLTQVFINLLKNAVEAMDNEGNLSINVKKVNQTIHIIVKDTGIGMTQEDL-ARLGEPYYS 570 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + + +S L Sbjct: 571 ISSKGTGIGLMVCYKVIENHGGSMSITSVCEVGTEVSIQLP 611 >gi|239904878|ref|YP_002951616.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239794741|dbj|BAH73730.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 404 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 71/234 (30%), Gaps = 30/234 (12%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50 + + +L + + H++ +P+ AI E L ++ Sbjct: 165 QAEKMATIGMLATGVAHEVNNPLTAIFGFAEGLRRRLPALKEKVDPRVMEDVEDYVATIL 224 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTG 106 + R L F R +V + D +++ + + V+V + Sbjct: 225 RECRRCQDIVTTLLTFSRQKTVSFSAVSLNAVVNDTLKLLRSHLKQRNQAKITVRVDLSE 284 Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +I + + ++ G + + Q SK S++ +G PE Sbjct: 285 NLPMVHGDEHQIKQVMLNLLVNAMDAITGPGRIIITTYQSSKGAVCLSVEDSGCGV-PPE 343 Query: 163 KFTQIVDGNVESTIDSHDIQ--FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + I + + +++ + + + L Sbjct: 344 NVDKLFEPFFTTKRSGKGIGIGLSTCMSIVKKHQGDITLKSTPGQGATFTVSLP 397 >gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 609 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 21/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-- 69 + + H++ +P+ + + LE L + I +Q+++ + I + + Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALGDGAWQDKDIAPRFIQVVQNETERMIRLVNDLLHLS 438 Query: 70 ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILL 120 + + + ++ + ++L Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDNIRFVRKIPREAIFIEVDEDKITQVLD 498 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 N+ A P+GG +T V++ +E I S+ G + F + + Sbjct: 499 NIISNALKYSPQGGTITFRVRELADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + + L Sbjct: 559 LGGTGLGLAIAKEVVVAHGGTIWAESKEHKGTTIYFTLP 597 >gi|218289023|ref|ZP_03493260.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218240848|gb|EED08026.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 565 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQ 51 + + L A+ + I H+ +P+ + ++LL ++ Sbjct: 338 RRQAIRMHEERLAAVGQFAASIAHEFRNPLTTVMGFVQLLRSRLDELTPGAYEAIWGELE 397 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ + S ++ K + + + + + V + + I Sbjct: 398 RMKDVTDSLMVLAKPEAVKPIPCDLAEMARSAISVCEPLALERGVPVDLGPLAPAQVIGH 457 Query: 112 SRERAKILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ ++L A + G+V + + ++ E I ++ G + + Sbjct: 458 PGQLRQMTVHLLRNAIEAASETNGRVILWLTATEAEAIVHIQDTGPGI-PEPLLEHLGEP 516 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215 + + V + E+ + D + L K Sbjct: 517 FYHTKEKGTGLGLMVVHRIVQEHGGEIRIRRTDHPRGTAVEVRLPK 562 >gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4] Length = 527 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 62/216 (28%), Gaps = 23/216 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +PI +I E L ++ + + ++ S ++ + Sbjct: 300 FVANVSHELKTPITSIKGFSETLLDGALEDRDTLEYFLNIMLTESDRLQSLIQDLLDLSK 359 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L + + + + + + + ++ +N Sbjct: 360 LEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPELTLEGDMNRFKQVFIN 419 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A + GG V + V++ ++E ++ NG E +I + Sbjct: 420 LINNAISYTGPGGHVKVFVKEERDEITIKVQDNGVGIAASELP-RIFERFYRIDKARSRN 478 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V + + + E + Sbjct: 479 SGGTGLGLAIVKHIVEAHHGEIDVESSEGVGTTFIV 514 >gi|121535984|ref|ZP_01667777.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121305444|gb|EAX46393.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 583 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 70/238 (29%), Gaps = 24/238 (10%) Query: 1 MAKNICF---NLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIR 54 +A+++ L + + + + H++ +P+ +H + L + I D + + R Sbjct: 341 LAQDMEEYVRRLEQLDKMRRDFVANVSHELRTPLTIMHGYNQALQDGTITDPALVKKYHR 400 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + K + + + + ++ V+ + VS Sbjct: 401 VMGEEIMRLEKLIADLLDLSQLQANGLTLDIEEVSLAEIVDNVVTLLKPRSEEKGVSLAA 460 Query: 107 E-------KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 ++ L L A P GG+++I + E + ++ G Sbjct: 461 CVAPGVPPIQGDGDRLTQLALILVDNALKFTPPGGRISIDLTVQDGEEVLTVADTGTGIA 520 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + G+ + + + ++ V + Sbjct: 521 PEDLPYIWERFYKGDKSRASSGTGLGLAIARQIIELHGAKVDVTSRCGEGTVFTIRFP 578 >gi|170719924|ref|YP_001747612.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida W619] gi|169757927|gb|ACA71243.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida W619] Length = 991 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 ++++ + S + F + + + + V Sbjct: 798 QILEQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A++L+NL A + P G V + + S++ ++ G+ Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRTEVSEHTVDLIVEDEGSGIPKN 917 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976 >gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 892 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + S L + + + H+I +P+ AI ++ E +E + + Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + G V +I ++ Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163 E + + ++ +I + + + V+ + +F +K G PEK Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + L Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|300864887|ref|ZP_07109733.1| periplasmic sensor Signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300337111|emb|CBN54883.1| periplasmic sensor Signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 470 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 24/233 (10%) Query: 6 CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54 N S L +L + + H++ +PI + ++E L E + D Q + Sbjct: 237 ELNRMSERLASLDYERRTFLANVSHELRTPISNVLVTVEALRSGAVDEPELRDRFFQNVE 296 Query: 55 LSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-W 104 + ++ + V S + + V A V V Sbjct: 297 DETKRLSRLVRDLLDLGRLEAGVTQLEQQSLVLSSLINRAVGAVKPRMEARGVSVTVDVA 356 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + +LN+ A +V IS + + + ++ G + Sbjct: 357 DIILFGDPERLLQAILNVLDNAIKHSLPDSEVMISGRKEGKQAVIKVEDQGPGISSSDLP 416 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F Q + + + + + + E + + L Sbjct: 417 RIFEQFYTTDPSRSGSGTGLGLAIAKRIVEAHSGSITAESRIGKGAIFTICLP 469 >gi|228953435|ref|ZP_04115480.1| hypothetical protein bthur0006_28140 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806174|gb|EEM52748.1| hypothetical protein bthur0006_28140 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 801 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTESENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + ++++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKIKIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGNVFIESEVNKGTTVEVTLP 795 >gi|229080291|ref|ZP_04212816.1| hypothetical protein bcere0023_29380 [Bacillus cereus Rock4-2] gi|228702960|gb|EEL55421.1| hypothetical protein bcere0023_29380 [Bacillus cereus Rock4-2] Length = 801 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTESENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + ++++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKIKIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGNVFIESEVNKGTTVEVTLP 795 >gi|332977098|gb|EGK13902.1| sensor histidine kinase BaeS [Desmospora sp. 8437] Length = 461 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58 M+K + + + L + + H++ +P+ + LE + + + E + ++ + Sbjct: 210 MSKQLQ---QAEEARKNLVADVAHELRTPLTVLQGKLEWIQQRGQPVRPENLLPLQDELI 266 Query: 59 SAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + V + I+ + + + Sbjct: 267 RLNRLVDDLHQLSLAEAKKLPLDQKPTDLPVLLRRIIDRIQPDADRKGVEIRLHCDAGIP 326 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ LNL A P GG V + + K + G Sbjct: 327 PISVDPNRITQVFLNLLTNALRYTPPGGSVKVDITKKKEGLQIQVSDTGVGIPPEHLPHL 386 Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E D L Sbjct: 387 FNRFYRTDESRARNRGGMGLGLAIAKEFVLAHHGTIEVESAPDQGTTFIVELP 439 >gi|170697001|ref|ZP_02888097.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170138175|gb|EDT06407.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1034 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 66/245 (26%), Gaps = 33/245 (13%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + + H+I +P+ I +LELL+ ++ + Sbjct: 483 LVQQLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSALDATQHGRVHT 541 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 SA L + ++ + + I + + + Sbjct: 542 LRTSATSLLALVSDILDFSKIEAGAMSVESIAFDLTAAVERELNAFATIAKAKGVQLFCE 601 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155 S T A++L NL A G ++ ++ G Sbjct: 602 FHASSTQRMRGDPTRFAQVLRNLLSNALKFTDVGRVTVRVAVVAERHDAPELSVEVEDTG 661 Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E ++ + + + L R+ E Sbjct: 662 IGI-AAEHRRKLFNAFSQVDTSITRRYGGTGLGLALCDRLVAAMGGRIAVESEPGFGSRF 720 Query: 210 SALLE 214 S LL Sbjct: 721 SVLLP 725 >gi|219850106|ref|YP_002464539.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus aggregans DSM 9485] gi|219544365|gb|ACL26103.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chloroflexus aggregans DSM 9485] Length = 860 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 63/242 (26%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 + NL ++ +A++ I HD + + I + L + + Sbjct: 473 ERRLQNLERLESLAIMAGGIAHDFNNLLTVIEGNANFLKNAITATHPVDQYLQNLLTATQ 532 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + L+F +D + +++ + +++ + + Sbjct: 533 QAGGLVEQLLRFAVADPLKLQQIDLNRLIEKAIPILQTTLKHPAVIRLDLDPALPPIRAD 592 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDS----------------------KNENIFSLK 152 +I L + ++ + + S+ Sbjct: 593 PTQIRQVLLNLFMNAVDVLPEQNGCICIQTALRAIDANEFVGFISPHRLTSGKYVTMSVH 652 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG+ QI + + + H + V+ + ++ + + + Sbjct: 653 DNGHGIDPK-MQQQIFEPFFTTKVHGHGLGLPSVLNIVRQHGGAIEVKSRPGEGSTFTVW 711 Query: 213 LE 214 Sbjct: 712 FP 713 >gi|24376189|ref|NP_720233.1| sensor histidine kinase [Shewanella oneidensis MR-1] gi|24351236|gb|AAN57676.1|AE015903_8 sensor histidine kinase [Shewanella oneidensis MR-1] Length = 709 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + +++ L AL L + I H+I +P I ++ELL D V Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDKAEVVKEEIDLV 511 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 +Q + S L++ R I E ++ ++ K+ +++ Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++ QD ++ G+ Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDIAIGVKIEVEDEGSGI- 630 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ +I D + D + + + + + + L Sbjct: 631 EPEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684 >gi|73661331|ref|YP_300112.1| two-component sensor histidine kinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123734265|sp|Q4A159|WALK_STAS1 RecName: Full=Sensor protein kinase walK gi|72493846|dbj|BAE17167.1| two-component sensor histidine kinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 610 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 380 FVANVSHELRTPLTSMNSYIEALESGAWKDGELAPQFLSVTREETERMIRLVNDLLQLSK 439 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122 + + + + I + + T + ++ N+ Sbjct: 440 MDNESEQITKEIVDFNMFINKIINRHEMSAKDTTFVREVPTETIFTEIDPDKMTQVFDNV 499 Query: 123 FMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + +K NG + F + + Sbjct: 500 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRVKDNGIGIPINKVDKIFDRFYRVDKARTRK 559 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 560 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 598 >gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 588 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 72/226 (31%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR--- 63 + + + + H++ +P+ +I +E L ++ + + +I + + Sbjct: 360 EKMRSEFVANVSHELKTPLTSISGFIETLKSGAIEDEETKMRFLDIIDIETERLARLIND 419 Query: 64 --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 LA + ++L + ++ I ++ QV + +++ Sbjct: 420 ILTLSEIENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQVELNLPILIGNQDW 479 Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++ +NL A GG+V IS N +FS+K G + ++ + Sbjct: 480 FKQMFINLIDNALKYTSEGGRVQISAYKKYNHVVFSVKDCGVGIPKKDIP-RLFERFYRV 538 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + R+ ++ Sbjct: 539 DKARTRKVGGTGLGLAIVKHIVLSLNGRIKVNSEVGKGTEFILIVP 584 >gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 867 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 18/227 (7%), Positives = 56/227 (24%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59 L + L + + + H+I +P+ AI +LL + + ++ I ++ Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLEAFSSEEVQQFVETININCTL 695 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107 + + S + + + + ++ + + Sbjct: 696 LLALINDILDLSRIESGTMDFQLSSYNLTFIMQQVYDSQRLSMPQGVELRTDFPEGTGKD 755 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + S +++ NL A +G + ++ G ++ Sbjct: 756 IVTDSVRLKQVVNNLINNARKFTAKGSITLGYSMEEPGYTTVFVEDTGAGISDEDQKHIF 815 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + L Sbjct: 816 ERFYKADSFTQGAGLGLSICQTIVERLHGTITVTSKLGRGTRFEVRL 862 >gi|295094340|emb|CBK83431.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1] Length = 566 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 27/242 (11%) Query: 1 MAKNI----CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49 M + + + + L S I HD+ +PI I +E + + + Sbjct: 263 MRQKLSDFTKAKMRYEEENRQLISNISHDLRTPITTIKGYVEGIMDGVADTPEKQERYLK 322 Query: 50 --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDK 98 M + + SV ++ + + Sbjct: 323 MIYSKANEMDSLINELSLYTNINNNAIPYEFHRVSVKDYFDDCMEEVYTTLLSKNMTLTY 382 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNL 157 + + I + +++ N+ A + G++ I++ D+ E S+ NG Sbjct: 383 KNYCDDDVKVIVDPDQLKRVINNIITNAIKYTDKEYGQIDINIYDNDAEVKVSISDNGRG 442 Query: 158 ARF---PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P F ++ + + + E+ + + L Sbjct: 443 IDSESLPHIFDRMYRADSARQSRGGSGLGLAICKKIVEEHGGNIYATSQLGVGTTIVFTL 502 Query: 214 EK 215 +K Sbjct: 503 KK 504 >gi|226941193|ref|YP_002796267.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226716120|gb|ACO75258.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 746 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 21/216 (9%) Query: 18 LCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLI--------RLSSMSAIIRLK 65 + S I H++ P+ AI N L L++E + ++ + + Sbjct: 512 MASGIAHELNQPLAAIVNYNQACLRLIEEDEPDFPTLRHALSATATQAQRAGEILKRLRA 571 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLN 121 F+ + VD + D+ + E + + I + + +++LN Sbjct: 572 FVARQPIHLAPVDLNQVVKDVLALAEYDVRRHEVTVDTALSHDLPPIIADAIQLEQVVLN 631 Query: 122 LFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 L A ++ ++ ++ NG E ++ + + Sbjct: 632 LLRNALDAIQTVAPWGRIHLATSHAEQHVRLTISDNGCGL--GEHADRMFEPFYTTKSSG 689 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ V + L Sbjct: 690 MGLGLTICQTIIESFGGRIRAANQAAGGAVFTIELP 725 >gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492] gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492] gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 388 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 65/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 +A+ N ++ + + H+I +P+ AI ELL + + +++++ ++ Sbjct: 144 LAREKAENADRSK--SVFLANMSHEIRTPLNAIVGFSELLASASTDEEKTQFLEIVQSNN 201 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + F + L ++ + ++ + Sbjct: 202 EMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMFDLEQQFRMRVAELGSGVQIVREASE 261 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ + +R +++ N A G + F +K G + Sbjct: 262 KEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPY-EEGLYFYVKDTGTGIPQEKL 320 Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + L Sbjct: 321 PHVFERFVKLKQEKNGTGLGLSICQTIVRKLGGEIGVESEEGAGSTFWFTLP 372 >gi|39998007|ref|NP_953958.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39984952|gb|AAR36308.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 487 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 67/234 (28%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53 + + + D L ++ + + I H+I +P+ I ++ ++ E E++ + Sbjct: 245 LEQYHFQQMERADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEV 304 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK 108 + + T + L D+ ++ + ++ Sbjct: 305 IEQVNRLDKTVNDLLFFGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPL 364 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLARF 160 + + ++ + + ++ + I+ ++ + G Sbjct: 365 PLVFVDPKQVQQVVLNLILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGI-P 423 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I + + L ++ L + + V S L Sbjct: 424 EPIISKIFTPFFTTKAQGTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 477 >gi|328954299|ref|YP_004371633.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328454623|gb|AEB10452.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 591 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 65/221 (29%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +PI +I +E L E + ++ + ++ + Sbjct: 369 FVANVSHELRTPITSIKGFVETLQSGAIYEPDNAVHFLNIMARQADRLNQIIEDLLTLSR 428 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KIL 119 + + + A + +V ++I +S + + Sbjct: 429 IEQEEEEGKVTLTWKPLKTVLQAAIQVCEVRAAEKQITISLSCPDNLQARINPPLLEEAV 488 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A P V ++ + + + + ++ G E ++ + Sbjct: 489 VNLIDNAIKYSPPETAVAVTAEPATEKVLIRVRDQGRGIAL-EHLPRLFERFYRVDTSRS 547 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V +A + + + V + L Sbjct: 548 RKVGGTGLGLAIVKHIAQAHDGWVTVDSTLGQGSVFTLHLP 588 >gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 589 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 54/231 (23%), Gaps = 23/231 (9%) Query: 6 CFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 S + + I H++ +P+ +I EL+++ + + + +A Sbjct: 355 EARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEKRIEQPKFKDQAGMIRRAAEHLN 414 Query: 65 KFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEK 108 + V + A ++ Sbjct: 415 ALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAAEKGLELRVQIADDVPETL 474 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165 + ++L NL A G V I V+ + + G + F Sbjct: 475 LTDELRLKQVLNNLLSNAMKFTAG-GHVAIEVERDATQLRLHVVDTGPGIPAEQHELIFE 533 Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + LA L + L Sbjct: 534 RFRQADSQVAHQHGGTGLGLALSRSLAELMGGTLGVTSTPGEGARFTLTLP 584 >gi|167760295|ref|ZP_02432422.1| hypothetical protein CLOSCI_02668 [Clostridium scindens ATCC 35704] gi|167662178|gb|EDS06308.1| hypothetical protein CLOSCI_02668 [Clostridium scindens ATCC 35704] Length = 250 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 66/237 (27%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLC-------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + + + +L+ L S I H+I +P+ ++++L+L++ E Sbjct: 10 LQQIMAESPQKKELLTRLLESHRVDISTISHEIRNPLTLVYSTLQLIESQHPEVLTFHHW 69 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109 + + Y D + V E Sbjct: 70 EGMRQDIEYMKQLLEQLSSYNNGERLECAATDARTFLRKIALSFASTLVDSQIEFTSRIP 129 Query: 110 -------DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNL 157 + ++LLNL A ++ + + + ++ G Sbjct: 130 ATLPSISIDPMKMKQVLLNLLKNAKDAVLSCPDRDNAAISLTAAFQNQQVVITISDTGCG 189 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T I + + + + +A + L E + D V + L Sbjct: 190 IAPEDLST-IFEPFMTHKQNGTGLGLAIAKRIASAHHGSLTVESVLDKGTVFTLTLP 245 >gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] Length = 559 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 68/241 (28%), Gaps = 31/241 (12%) Query: 3 KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + ++ A + + H+I +P+ + ++LL + ++DE + + Sbjct: 153 QELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQDEQREYATIIRN 212 Query: 59 SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQV 102 SA + F ++ G + L Q + + ++ Sbjct: 213 SADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYFIED 272 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLA 158 ++L+NL A GG + ++++ F++K G Sbjct: 273 QIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGI 332 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + ++ + + L + + + Sbjct: 333 SSKKL-DRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFT 391 Query: 213 L 213 + Sbjct: 392 I 392 >gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 606 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 63/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ +I + E L ++ + +I + +K + Sbjct: 374 FVANVSHELRTPLTSIKSYSETLMDGALEDKETAYRFLNVINSEADRMTRLVKDLLQLSR 433 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + IE ++ V + + E +++L Sbjct: 434 LENEQMQWNMQPFCFESLVRSSVEKIELSAKEKRQVIECFSIGDKPEVYADKDRIEQVVL 493 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VEST 175 N+ A P GK+T+ + ++ + +G + F + + Sbjct: 494 NVLTNAIKYTPDKGKITVYIGKMYSDAYVKVVDSGIGIPEEDIKRVFERFYRVDKARSRE 553 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K + + L Sbjct: 554 MGGTGLGLSIAKEIIEAHKGSISISSQLGKGTEVIVRLP 592 >gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10] gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10] Length = 559 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 68/241 (28%), Gaps = 31/241 (12%) Query: 3 KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + ++ A + + H+I +P+ + ++LL + ++DE + + Sbjct: 153 QELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQDEQREYATIIRN 212 Query: 59 SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQV 102 SA + F ++ G + L Q + + ++ Sbjct: 213 SADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIED 272 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLA 158 ++L+NL A GG + ++++ F++K G Sbjct: 273 QIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGI 332 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + ++ + + L + + + Sbjct: 333 SSKKL-DRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFT 391 Query: 213 L 213 + Sbjct: 392 I 392 >gi|49480108|ref|YP_037335.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331664|gb|AAT62310.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 458 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|75910540|ref|YP_324836.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704265|gb|ABA23941.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 759 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 76/241 (31%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 + F ++ + L S I HD+ + + I +LL D +++++ +++ Sbjct: 381 EAQLFRTQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINA 440 Query: 58 MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + ++ + ++ +++++ V + +S Sbjct: 441 KRGADLVKQVLSFARGVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSG 500 Query: 114 ER---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155 + ++L+NL + A ++P GG + + ++ G Sbjct: 501 DSTQLHQVLMNLCVNARDAMPNGGTLTISAENLLIDENYARMNLEAKQGHYIMVTVSDTG 560 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I + + + V+ + + + + L Sbjct: 561 VGI-SPENLDRIFEPFFTTKAVGQGTGLGLSTVLGIVKSHGGFVNVYSEEGRGTTFKVYL 619 Query: 214 E 214 Sbjct: 620 P 620 >gi|229138689|ref|ZP_04267271.1| hypothetical protein bcere0013_18030 [Bacillus cereus BDRD-ST26] gi|228644808|gb|EEL01058.1| hypothetical protein bcere0013_18030 [Bacillus cereus BDRD-ST26] Length = 351 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 346 >gi|222095608|ref|YP_002529665.1| sensor histidine kinase [Bacillus cereus Q1] gi|221239666|gb|ACM12376.1| sensor histidine kinase [Bacillus cereus Q1] Length = 351 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 346 >gi|242279658|ref|YP_002991787.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242122552|gb|ACS80248.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 498 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 16/229 (6%) Query: 2 AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + + L + L + + H+I P+ I +L + + +++ Sbjct: 261 RQELEQQLRQADRLAKIGQFSAGVAHEINEPLANILGYAQLALQTPELPDQVRMDLDNIV 320 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKI 109 + + F R D + D ++ ++ + + Sbjct: 321 DSSLHAREIIKKIMFFSRQLPPQFIPTDLNQTIRDALRITGTAAKRGNIEIRCEFDEKLP 380 Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 R ++++NL A ++ GG +TI N+ + NG + Sbjct: 381 LVSADPRHIKQVIVNLAANAIQAMDEGGVLTIKTLSDGNDVYIIVDDNGPGIHADDLKQI 440 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D + V+ + +K + + H L Sbjct: 441 FNPFFTTKDVDKGTGLGLSVVLGIVKAHKGLIQVQSEYGHGTSFEIALP 489 >gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] Length = 377 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIED--EV 49 + +++ + ++ A + S HD+ P+ I ELL +E E + Sbjct: 147 LNQDLAHSNQELEQFAYIAS---HDLQQPLQTITGFAELLLSLKSEIILEEEADEYVTPI 203 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ L++ R+ + E + ++++ + Sbjct: 204 LEEGIRMQGLIKNLLEYSRVGTKRQELQPIDCNIILAETLKNLHHSIEESQAIITHKTLP 263 Query: 110 DLSRERAKILLNLFM---VAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ ++ L +VTI+ + E IF ++ NG + F Sbjct: 264 TVKADKIQLGQLLQNLISNGIKYCRPGIIPQVTITTEQKPQEWIFIIQDNGIGI-KSDYF 322 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I I + + ++ E L Sbjct: 323 ERIFQVFQRLHTVQDYPGTGIGLAICKKIVERHGGKVWVESEFGVGTTFYFTLP 376 >gi|152976031|ref|YP_001375548.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024783|gb|ABS22553.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 506 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 59/228 (25%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E + + S Sbjct: 275 LKETKKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLKPEISEQNKWYIDVMLSE 334 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKID 110 + + I I+ +I I + + T + Sbjct: 335 IS-QMESITSQFMAMSKPQVLSIDFHQIQTLIEEVVTFILPTAIMHSVHIIMDHTAVIPE 393 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQ 166 + + ++ + ++ ++ + G + Sbjct: 394 IQCDGNQLKQVFINILKNAIEAMPDGGNIFIQTEALDSEFICIRIIDEGCGIPENRIS-R 452 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ +L ++ + L Sbjct: 453 LGEPFYSLKEKGTGLGLMICYKIIEEHQGKLQILSEVNNGTTVEIYLP 500 >gi|89099323|ref|ZP_01172200.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89085932|gb|EAR65056.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 497 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 12/218 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L ++LV L + H+I +P+ I ++LL E + ++ + + Sbjct: 278 ELQKLELVGTLAASTAHEIRNPLTGIKGLVQLLSEKYTHSDDQYFFKVIDTEISRINEIV 337 Query: 68 RLAFGYTGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + E + Sbjct: 338 SEFLILGKPAALKLEKINLKEIISDLIPLFESEASLADVQCTYHLPDNPAIAEGTQDQLK 397 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL A ++P GG+++IS+ + L+ G+ R + ++ S Sbjct: 398 QVLLNLAKNAFEAMPDGGRLSISLHTGGKWHSIILEDTGSGIREEDL-EKVFTPFFTSKD 456 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + LL Sbjct: 457 MGTGLGLVVCQRIIESFGGSITISSRVNEGTKAEILLP 494 >gi|15641456|ref|NP_231088.1| sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588029|ref|ZP_01677780.1| sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|153817899|ref|ZP_01970566.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|153822685|ref|ZP_01975352.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227081617|ref|YP_002810168.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229504980|ref|ZP_04394490.1| signal transduction histidine kinase [Vibrio cholerae BX 330286] gi|229511351|ref|ZP_04400830.1| signal transduction histidine kinase [Vibrio cholerae B33] gi|229518469|ref|ZP_04407913.1| signal transduction histidine kinase [Vibrio cholerae RC9] gi|229607983|ref|YP_002878631.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236] gi|254848565|ref|ZP_05237915.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|298498476|ref|ZP_07008283.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|298499372|ref|ZP_07009178.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|9655945|gb|AAF94602.1| sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547724|gb|EAX57816.1| sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|126511526|gb|EAZ74120.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|126519805|gb|EAZ77028.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227009505|gb|ACP05717.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229345184|gb|EEO10158.1| signal transduction histidine kinase [Vibrio cholerae RC9] gi|229351316|gb|EEO16257.1| signal transduction histidine kinase [Vibrio cholerae B33] gi|229357203|gb|EEO22120.1| signal transduction histidine kinase [Vibrio cholerae BX 330286] gi|229370638|gb|ACQ61061.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236] gi|254844270|gb|EET22684.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|297541353|gb|EFH77404.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|297542809|gb|EFH78859.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 572 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|327403132|ref|YP_004343970.1| histidine kinase [Fluviicola taffensis DSM 16823] gi|327318640|gb|AEA43132.1| histidine kinase [Fluviicola taffensis DSM 16823] Length = 386 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 76/219 (34%), Gaps = 14/219 (6%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ++ + + I H++ +P+G+I +L+ + + + + +AI + ++ Sbjct: 166 DRLKVLGEITAGIAHELNTPLGSILGFSQLIIDDSKDSSTLADAQKIVHAAIHAREVVKK 225 Query: 70 AFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 ++ + + + + ++ I + + ++ Sbjct: 226 LMYFSCELPQRFEFVSLQAVVNDTVLLIKPSLESKKIDWKMRLDKNPILVQLDTVQITQV 285 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-- 176 + NL A + P+ G++ I V D ++ G E TQI + + Sbjct: 286 VFNLINNALHASPKEGQILIEVCDKGENAELIIQDFGIGM-SEETVTQIFEPFFTTKELG 344 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + +K + + + V +L K Sbjct: 345 EGMGLGLSVVHGIVKSHKGSIFVKSKVNEGTVFRIVLPK 383 >gi|229124238|ref|ZP_04253430.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201] gi|228659540|gb|EEL15188.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201] Length = 484 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + K S N I + NG+ Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYTDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|73748463|ref|YP_307702.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73660179|emb|CAI82786.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 852 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 17/226 (7%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62 + + L +L L + + H++ +P+ ++ EL+ E + +++ Q I++ S A Sbjct: 622 AQLMITDRLASLGELSAGLAHELNNPLTSVIGFSELIQEKILPEDLRQDIQIISQEAQRA 681 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER 115 L F R VD + + + + ++ + ++ + Sbjct: 682 AEIIRNLLTFARRHEPSKDWVDMNQIIHKVLAICNYGQKVHNIQLITNLDPNLPEIKADY 741 Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ L + + + IS + + S++ +G Sbjct: 742 FQMQQVLLNIVINAEYFMTQSHGEGTIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDP 801 Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +L E + + Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIEIP 847 >gi|86140888|ref|ZP_01059447.1| sensory box sensor histidine kinase [Leeuwenhoekiella blandensis MED217] gi|85832830|gb|EAQ51279.1| sensory box sensor histidine kinase [Leeuwenhoekiella blandensis MED217] Length = 358 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 66/234 (28%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELLDE--------VGIED 47 +N M+ L + I H++ +P+ I ELL + D Sbjct: 126 KQNAARLRQQMEHADRLAIIGELTAGIAHELNTPLANILGFAELLKDDLEENTAAGADLD 185 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VS 103 ++++ S + F R V+ + + + +++ + Sbjct: 186 KIIKNAIFSREVVKKLMFFSRAMPQEKTLVNIVPQVKEAINLLDATFRKENVRYSVDIED 245 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +IL NL + A P G V I V + G E Sbjct: 246 EEMLLHVDTVQLTQILFNLTINAIYFSPPDGLVQIRVSQDAKNIYLEIFDEGPGL-SEEG 304 Query: 164 FTQIVDGNVESTIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + V + + + + + V L K Sbjct: 305 LEKVFQPFFTTKPTGSGAGLGLSVVHGIVTSHNGSISAKNNETKGAVFKVSLPK 358 >gi|302036582|ref|YP_003796904.1| sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300604646|emb|CBK40978.1| Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 765 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 68/231 (29%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 +++ + + A + RI H+I +P+ I S + L + + + + Sbjct: 535 EDLSELIKAQKAAAWREVAQRIAHEIKNPLTPIQLSAQRLRKKFQDKAPDFDRICDESTQ 594 Query: 55 LSSMSAIIRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + +V+SL + + D + V+ + Sbjct: 595 VIINEVGSLKQMLDEFSKFARMPAPHMTVNSLDDVVKEVVALYDSAHREVECVVTLDPDL 654 Query: 109 IDLSRERAKILL---NLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +R +I NL ++ +T + + ++ G PE Sbjct: 655 PLFNFDREQIKRVLVNLCDNGIHAMNHKGHLWITTRYDTKQRRAVVTVADEGTGI-APED 713 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V + ++ ++ + + L Sbjct: 714 QEKLFVPYFSRKKTGTGLGLAIVRRIVTDHDGQIHAGNHQPKGALFTFELP 764 >gi|229194968|ref|ZP_04321749.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293] gi|228588536|gb|EEK46573.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293] Length = 463 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 56/219 (25%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 ++ + L I + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKSISIAIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454 >gi|158321190|ref|YP_001513697.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158141389|gb|ABW19701.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 474 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 18/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 L L S I H++ +P+ + + +E + + + +++ + I + + Sbjct: 247 EQELLRKRLTSDISHELRTPLTILQSHIEAISDGVWEPTQDKLEICKAEVHRLIKLVDEL 306 Query: 68 RL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + L + Q V + E + Sbjct: 307 KHLTDIENHQLDLEIHRYCLSKDLNEVVTSFQYQFQEKGVLLNRNIKENIEIYGDKNKIR 366 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173 + ++NL A GG VT+ + ++++E +K G + F + G+ Sbjct: 367 QAVVNLISNAFKFTSSGGTVTVELLENQDEVEIVVKDTGMGIDQQDIPYVFERFYRGDAS 426 Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I L + ++ E + L K Sbjct: 427 RNRKTGGAGIGLSITKTLVEAHGGNIIVESEKNKGTKFIIRLPK 470 >gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 827 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I +P+ AI +LL E + + +L+ SS +A Sbjct: 314 LVQAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHLSQQQRRLVDDSSNAA 373 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104 L + ++ + L D + + I++ V Sbjct: 374 ESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENISLSILVGDEA 433 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPE 162 ++L NL A P GG+VT + +F++ G + Sbjct: 434 PQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGI-EKD 492 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 K +I + + L + E V LL Sbjct: 493 KHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAVFRVLLP 550 >gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 25/258 (9%), Positives = 66/258 (25%), Gaps = 46/258 (17%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56 K+I L S + H++ +P+ +I +L+LL ++ + + Sbjct: 434 KDISDRREVERLKDEFVSVVSHELRTPLTSISGALDLLASGVVPAGSEDAQRMLNIAANN 493 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106 + + + + +G + + ++ + V + + + Sbjct: 494 TDRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLSMSPLSA 553 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-------------------------GGKVTISVQ 141 S ++ NL A P + I + Sbjct: 554 HLWADSDRIIQVFTNLISNAIKFSPTGATVWVTAKILEKGELEKSQTPIPLYPQTPIPLY 613 Query: 142 DSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIR 196 +F++K G + F + + + + + + Sbjct: 614 PHTPIILFAVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTGLGLAICRSILQHHGGQ 673 Query: 197 LLPEIIDDHNVVLSALLE 214 + E S L Sbjct: 674 IWAESTSGEGSTFSFTLP 691 >gi|219667311|ref|YP_002457746.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfitobacterium hafniense DCB-2] gi|219537571|gb|ACL19310.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfitobacterium hafniense DCB-2] Length = 638 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 13/221 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + L +DL+ + + I H+I +P+ + L+ + + + ++ +L Sbjct: 411 LEKEMA-RLERLDLIGQMAAGIGHEIRNPMTTVRGYLQYISKKDKYADEIETFQLMIEEL 469 Query: 61 II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + F + L I V + + E Sbjct: 470 DRANEIITEYLSLSQDRVVDFKRINLNTIIQHLYPILSVHTKMEDKSIELNLGSLPELYL 529 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +E +++LNL ++P GK+TIS + I ++ G E ++ Sbjct: 530 DKKELCQLILNLVRNGLEAMPIKGKLTISTYIQQGNVILEVEDQGRGI-PNEIKDKVGTP 588 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + ++ + +A + + + + Sbjct: 589 FFTTKLNGTGLGMAICYSIAERHNALIDLQSGP-QGTKVRV 628 >gi|229029685|ref|ZP_04185760.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271] gi|228731627|gb|EEL82534.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271] Length = 345 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 112 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 168 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + L + + + +K +++ EK+ Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPEKTTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 228 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + GG +TI +Q+ + + +G + Sbjct: 229 HITADRESMSQVWINLIHNSIKFTSSGGTITIQLQEHEKVVEVRISDSGIGISEEQKQHI 288 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 289 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 341 >gi|229092208|ref|ZP_04223389.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42] gi|228691199|gb|EEL44963.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42] Length = 448 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 NIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|253702488|ref|YP_003023677.1| histidine kinase [Geobacter sp. M21] gi|251777338|gb|ACT19919.1| histidine kinase [Geobacter sp. M21] Length = 468 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 36/249 (14%) Query: 1 MAKNICFNLSSMD----------------LVALLCSRICHDIISPIGAIHNSLELLD--- 41 +A+N+ + + V L + I H+I +P+ I +++ L Sbjct: 217 LAENLNEMVEKLKEKEQLEKRLYEAEHLSKVGQLAAGIAHEIRNPLNYISLAIDHLKSES 276 Query: 42 -----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVI 90 E E E + + + + +G + ++ + Sbjct: 277 LPSCPEKAKELESIANNIKEEVRKANYMVLNFMNYGRPLKLRLQRVCYPELVDKAMQLMK 336 Query: 91 EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNE- 146 + V + + + L + ++P GGK TI + Sbjct: 337 DRLDERGIEVVRDIPEYLPPMLADPELMRNCLCNFISNSTQAMPEGGKFTIGASIAPETG 396 Query: 147 -NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 + G+ + ++ + + + E+ + + Sbjct: 397 EFRLTFSDEGSGIEPQDL-EKVFQPYFTTKEAGIGLGLAITERIVREHGGGIAVQSTKGE 455 Query: 206 NVVLSALLE 214 S L Sbjct: 456 GTTFSVTLP 464 >gi|196038119|ref|ZP_03105429.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196031389|gb|EDX69986.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 458 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 NIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|162454319|ref|YP_001616686.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164901|emb|CAN96206.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 850 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDL--VAL--------LCSRICHDIISPIGAIHNSLELL------DEVG 44 +A+ + L A + + + HD+ +P+ AI + ++ Sbjct: 602 LAQRAALAADNARLYEAAQRAIELRDNVLATVSHDLRNPLSAILTAAAVMTKRAVTRGEK 661 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIED 92 + + +Q I+ S+ + + + E ++ Sbjct: 662 GDTKAIQAIQRSAHRMDRLIHDLLDFASLRAGRLALRRQPQDPREIGREAVETFESQAQE 721 Query: 93 FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152 V ++L NL A G +T+ + + +FS+ Sbjct: 722 KGIQLGVVAADDVPLVTCDRDRVLQVLTNLLSNALQVTGAQGAITLRCERGEEHVVFSVA 781 Query: 153 INGNLARFPEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E + + L + + E Sbjct: 782 DTGPGIPENELPHLFERFWRGERNGYKGTGLGLAIARELVAAHGGTIDVESRVGVGTTFR 841 Query: 211 ALLE 214 + Sbjct: 842 FTIP 845 >gi|119896364|ref|YP_931577.1| putative sensor histidine kinase [Azoarcus sp. BH72] gi|119668777|emb|CAL92690.1| putative sensor histidine kinase [Azoarcus sp. BH72] Length = 728 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 28/255 (10%), Positives = 68/255 (26%), Gaps = 40/255 (15%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + + + + L A+ L + + H+I +P+ I +LEL+ + + + I Sbjct: 442 LRRAHQQLVMNEKLTAIGELTAGVAHEINNPVAVIQGNLELVRELLGGDSAPVADELAQI 501 Query: 54 RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104 + + YT VD+ +GD + ++ + + Sbjct: 502 DAQVGRIHGIVTKLLQFARPGDFAGYTEQVDASGLVGDCLLLTRHNLSRGRIEVTTALDA 561 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG------------------------GKVTISV 140 G E ++L+NL + A ++P G Sbjct: 562 RGTVEINRGELQQVLINLIVNAMQAMPDGGRLRLSTADIDEGGEDDDAGHGAGRNGKSEH 621 Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE 200 + ++ G + + + + L + Sbjct: 622 RHGFAGVCIRVEDTGCGIAADDLDRIFDPFFTTKKQEGTGLGLSISYAIVTRYGGHLNVD 681 Query: 201 IIDDHNVVLSALLEK 215 + L + Sbjct: 682 SQPGQGTRFTVCLRR 696 >gi|327484103|gb|AEA78510.1| Signal transduction histidine kinase [Vibrio cholerae LMA3894-4] Length = 570 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 185 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 244 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 305 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 364 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLYIP 428 >gi|320353717|ref|YP_004195056.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122219|gb|ADW17765.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 619 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 76/229 (33%), Gaps = 18/229 (7%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51 +++ + + L A+ + + H++ +P+ +I LL E D ++Q Sbjct: 385 RSLEQRMRENERLAAVGRMAGGVAHEVRNPLSSIKGLALLLKNKFPLGSKEQDTADLLIQ 444 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107 + + L F R + + G VD LG ++I + V Sbjct: 445 ETERMNRTITEMLSFTRPSALHLGRVDLGALLGRSLELIRAEAEENGIRSVLNIGPDLCP 504 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ +N+ + A ++ GG++ +S +D+ + G + Sbjct: 505 VLGDADRLQQVAMNVLLNAMQAMEEGGELVVSLANRDNGQTVELRISDTGAGIDPA-LLS 563 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + I + ++ + E + L Sbjct: 564 QVFYPYFTTKQGGTGIGLAICQKIVADHGGTIELESEPVKGTTVIVTLP 612 >gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 609 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 63/219 (28%), Gaps = 21/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69 + + H++ +P+ + + LE L + + +Q+++ + I + + Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKDIAPRFIQVVQNETERMIRLVNDLLHLS 438 Query: 70 ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILL 120 + + + ++ + ++L Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDNIRFVRKIPREAIFIEVDEDKITQVLD 498 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 N+ A P+GG +T V+ +E I S+ G + F + + Sbjct: 499 NIISNALKYSPQGGTITFRVRKLSDEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + + L Sbjct: 559 LGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLP 597 >gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 713 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50 K L + A + + + H++ +P+ +I ++L E + + Sbjct: 463 RKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLEVPGSELTNAHH 522 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIED-FIAVDK 98 + + S L + + D L D+E +I + Sbjct: 523 KYVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVEMLIRPLASKKNI 582 Query: 99 RVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + V + L + +++ N+ A GKV ++ + + E S+K NG Sbjct: 583 DIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFVTAKSGEKETSISVKDNG 642 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 +K + + + + V + + E + Sbjct: 643 IGI-AEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNVWVESEEGKGSTF 701 Query: 210 SALLE 214 + Sbjct: 702 IFTIP 706 >gi|229529485|ref|ZP_04418875.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)] gi|229333259|gb|EEN98745.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)] Length = 572 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|228934496|ref|ZP_04097331.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825133|gb|EEM70930.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 448 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 73/235 (31%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + +GG + V++ ++ I S+ NG E+ + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNQGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|229165595|ref|ZP_04293369.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621] gi|228617878|gb|EEK74929.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621] Length = 421 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 53/219 (24%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQL-------IRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ L E ++ ++ + Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIALKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260 Query: 68 RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++ + L V+ + + + +++ Sbjct: 261 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 320 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +K G + Sbjct: 321 NILNNAYRHSKEHYHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKARSRA 380 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419 >gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation) [Geobacillus kaustophilus HTA426] Length = 582 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69 + + H++ +P+ +I E L + + + +I S ++ + Sbjct: 361 FVANVSHELKTPVTSIKGFAETLLDGAMKDEAALEHFLTIILKESERLQTLVEELLDLSK 420 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLN 121 + + + K + +ILLN Sbjct: 421 IEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLVIRGDRNRMKQILLN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A P G+V + ++++ E + +K G E +I + Sbjct: 481 LLANAITYTPEHGRVAVEAEETEKEVLIHVKDTGIGIEEKEIP-RIFERFYRVDKARSRD 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + V + K Sbjct: 540 SGGTGLGLSIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579 >gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 882 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + + H+I +P+ AI LL ++ + I + + + Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + ++ V+ Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++ N A +G + F +K G + Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + ++ + E L Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741 >gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 882 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + + H+I +P+ AI LL ++ + I + + + Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + ++ V+ Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++ N A +G + F +K G + Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + ++ + E L Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741 >gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 732 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 20/229 (8%), Positives = 63/229 (27%), Gaps = 15/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI ++L D+ + + + +I ++ Sbjct: 496 LLRARDKAEESNRLKSTFLANMSHEIRTPLNAIVGFSQILTTTDDEEEKKQFVSIIESNN 555 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + + L ++ + + Sbjct: 556 VLLLQLIGDILDLSKIEAGTLEFVRNEVDLNVLMNELESSMRLKIADTVELRFTDRMPSC 615 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++L+NL A G ++ F + G + Sbjct: 616 RLYVDKNRLSQVLINLLTNAMKFTKEGYIHFGYRLVDEDTLEFYVSDTGCGIPKEQLRNI 675 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+ E + ++ Sbjct: 676 FERFIKLNNFVSGTGLGLSICQVIVERMGGRIWVESDEGKGATFFFTIK 724 >gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 882 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + + H+I +P+ AI LL ++ + I + + + Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + ++ V+ Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++ N A +G + F +K G + Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + ++ + E L Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741 >gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 882 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + + H+I +P+ AI LL ++ + I + + + Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + ++ V+ Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++ N A +G + F +K G + Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + ++ + E L Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741 >gi|26991379|ref|NP_746804.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida KT2440] gi|24986446|gb|AAN70268.1|AE016667_1 sensory box histidine kinase [Pseudomonas putida KT2440] Length = 991 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGEIIELSS 797 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + S + F + + + + V Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A++L+NL A + P G V + + +++ ++ G+ Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVNEHTVDLIVEDEGSGIPKN 917 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976 >gi|254226277|ref|ZP_04919869.1| sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125621191|gb|EAZ49533.1| sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 572 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|326940960|gb|AEA16856.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGM-EQEEMDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K +L + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELPK 458 >gi|298480139|ref|ZP_06998338.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|299144696|ref|ZP_07037764.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298273948|gb|EFI15510.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298515187|gb|EFI39068.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 399 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI +L+ +++ ++I +S + Sbjct: 177 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 236 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ +D + L V Sbjct: 237 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFCHKTQNGVKLILDDVDTDMYTSGDWNRI 296 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 +I+ NL A P+G + ++ ++ F +K +G T Sbjct: 297 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD 355 Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +L + R+ + L Sbjct: 356 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 395 >gi|228940322|ref|ZP_04102893.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973238|ref|ZP_04133827.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979801|ref|ZP_04140123.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407] gi|228779955|gb|EEM28200.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407] gi|228786434|gb|EEM34424.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819448|gb|EEM65502.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 448 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGM-EQEEMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K +L + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELPK 448 >gi|153829718|ref|ZP_01982385.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148874797|gb|EDL72932.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 572 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|77918268|ref|YP_356083.1| two-component sensor histidine kinase PhoR [Pelobacter carbinolicus DSM 2380] gi|77544351|gb|ABA87913.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 591 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 59/221 (26%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +PI I S+E L + +++I + + + Sbjct: 370 FVANVSHELKTPITGIKGSVETLLDGAMERPEDAVRFLRIIAKQAERLNAIIDDLLDLSR 429 Query: 73 -------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 V L + +++ + + + + Sbjct: 430 IEQGQNDQALELSMAPVVPVLQAAVHACDMKARDKSIELVLSCAAEISAEINPHLLEQAV 489 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A GG V I + + + ++ G E ++ + Sbjct: 490 VNLVDNAIKYSDAGGTVWIEARRDARQTVIEVRDQGCGI-DNEHLPRLFERFYRVDKARS 548 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ + V +L Sbjct: 549 RRAGGTGLGLSIVKHIVQAHGGRVTVDSEAGKGSVFRIILP 589 >gi|83312486|ref|YP_422750.1| sensor protein fixL [Magnetospirillum magneticum AMB-1] gi|82947327|dbj|BAE52191.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1] Length = 481 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 MAK S+ DL A + S HD+ P+ + + +L+ E + Sbjct: 249 MAKTEELARSNADLEQFAFIAS---HDLREPLRMVSAYMGMLERRFGPVVGDEGAEYIAY 305 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + L + E V + + + Sbjct: 306 AKEGAQRMDQLVLDLLEYSRVGRMEEPLEPVPLGEVVDGVVANLSPAIAQYGASVECRSP 365 Query: 113 --------RERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP- 161 E A++L NL A + + V S+ NG Sbjct: 366 LPAIPAVRGEMAQLLQNLIGNAVKYREPSRPLRVVVSAVRDGEYWQISVADNGIGISPEF 425 Query: 162 -EKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I + I + + R+ + + L Sbjct: 426 SERIFRIFQRLHTRDCFEGTGIGLAICKRIVERHGGRIWVNSVPGEGSTFTFTLP 480 >gi|150015425|ref|YP_001307679.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149901890|gb|ABR32723.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 357 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-S 59 MAK + L S + H+I SP+ +I LL + ++ + + Sbjct: 122 MAKELGSL---EKLRQDFISDVSHEIQSPLTSISGFATLLKKGSLDKDQISHYASIIETE 178 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVSWTGEKI 109 + K + L + ++ + K + + + E+ Sbjct: 179 SKRLSKLSENLLRLSNLESEDNNLNLKKYEINKQIESVLLMLEPQWSAKNITLDISLEET 238 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + + ++ +NL A P G + +++ ++++ + G + Sbjct: 239 IICGDEDLLSQVFINLLNNAIKFTPENGNIGVNLYNNEDGVECKVSDTGIGISSEDQPRI 298 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + V + + ++ L K Sbjct: 299 FERFYKADKARNRSLGGNGLGLSIVKKIIDLHGGKISLTSEIGKGTEFIIWLPK 352 >gi|297585502|ref|YP_003701282.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297143959|gb|ADI00717.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 722 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 22/235 (9%) Query: 1 MAKNICFN---LSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI 53 + +N + S L + + + + H+I +P+ I ++LL+ + G E +++ Sbjct: 486 LTENRRMERELIHSEKLGMIGQMAAGLAHEIRNPMTTIKGFMQLLEQRDNGKNKEHYRVV 545 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQV 102 + + + L E I++ + Sbjct: 546 LSEIDRVNDIMNELMNISSPEEVDEQELNETYVGGQIDEILTLHEPDIQERHIEVETFFA 605 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLAR 159 + + ++L N+ A ++P GG++ S E + ++ G+ Sbjct: 606 EGDEPILTNVHKLKQVLSNVIRNAIEAMPDGGRLILRAHSESMDPAEVVITISDTGDGM- 664 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + H + + E + + I L Sbjct: 665 DEETAKKAGTPFFTTKEAGHGLGLATSYRIVKELGGSIDIDSIKGKGTSFLIRLP 719 >gi|254286108|ref|ZP_04961068.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150423777|gb|EDN15718.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 572 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|56419521|ref|YP_146839.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56379363|dbj|BAD75271.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 430 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 63/206 (30%), Gaps = 10/206 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + I H+I +P+ ++ ++++ E ++ + + L + Sbjct: 211 LAAGIAHEIRNPLTSMKGFIQMMQETREVNDHYMRIMLSELGRINQIVSELLVLAKPQSH 270 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + + +I ++ + + ++LLN+ A Sbjct: 271 DYRPFLLDEAISYVISLIGHEATLNNVSISVHNTAPKACVYGDQNQIVQVLLNVMKNAVE 330 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG + + V + + + G E+ +I + + + Sbjct: 331 AMPDGGILYVHVAEGDGKIYVDVADTGVGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + E+K + E + Sbjct: 390 IVQEHKGTMRIESEVGKGTTVHLTFP 415 >gi|89098438|ref|ZP_01171322.1| hypothetical protein B14911_12317 [Bacillus sp. NRRL B-14911] gi|89086987|gb|EAR66104.1| hypothetical protein B14911_12317 [Bacillus sp. NRRL B-14911] Length = 282 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 61/211 (28%), Gaps = 15/211 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L + I H+I +P+ + L+LL + + I ++ L + + Sbjct: 53 LAAGIAHEIRNPLTTVKGFLQLLKPQLREIGKEEYASIALGEISRANEIIGSFLNANKPS 112 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVA 126 V + +I + E + + + ++L NLF A Sbjct: 113 ENKMKKVHINQIVKEIVMLYESEAVLRGSLLLFEPSPNDPTMAAVPGELKQVLSNLFKNA 172 Query: 127 HASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 ++ V V+ + +++ NG E +I + + I Sbjct: 173 MEAMTIQSMAGSVQAKVECCSKHAVITIQDNGCGM-SEETLQRIYEPFYTTKETGTGIGM 231 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E + + +L Sbjct: 232 SVCKKIVEELGGSIDISSRPGEGTAVKVILP 262 >gi|148549762|ref|YP_001269864.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida F1] gi|148513820|gb|ABQ80680.1| Two-component sensor kinase CbrA [Pseudomonas putida F1] Length = 991 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + S + F + + + + V Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A++L+NL A + P G V + + +++ ++ G+ Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVNEHTVDLIVEDEGSGIPKN 917 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976 >gi|147674610|ref|YP_001217001.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|146316493|gb|ABQ21032.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227013361|gb|ACP09571.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] Length = 514 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 129 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 188 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 189 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 248 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 249 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 307 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 308 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 366 Query: 209 LSALLE 214 + + Sbjct: 367 FTLYIP 372 >gi|326625882|gb|EGE32227.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 534 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 309 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 368 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 369 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 428 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ NG + I + Sbjct: 429 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQL-EAIFTPYFTT 487 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 488 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 527 >gi|229181704|ref|ZP_04309027.1| hypothetical protein bcere0005_50430 [Bacillus cereus 172560W] gi|229193709|ref|ZP_04320650.1| hypothetical protein bcere0002_53520 [Bacillus cereus ATCC 10876] gi|228589734|gb|EEK47612.1| hypothetical protein bcere0002_53520 [Bacillus cereus ATCC 10876] gi|228601737|gb|EEK59235.1| hypothetical protein bcere0005_50430 [Bacillus cereus 172560W] Length = 672 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697] gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697] Length = 912 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 19/229 (8%), Positives = 54/229 (23%), Gaps = 20/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI ++ + ++ ++ Sbjct: 513 AKEKAEASDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDAEERKSFYDIVEANNE 570 Query: 59 SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + D + Sbjct: 571 RLLQLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCPQGVKLIYEPSDEEIT 630 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A + GKV+ + + F + G + ++ Sbjct: 631 IEGDKNRIFQVISNLIGNAFKFTTQ-GKVSYGYRRKGDGIEFHVSDTGIGIEAGKL-DKV 688 Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + + L Sbjct: 689 FERFVKMNSFAQGTGLGLSICKTIIERLGGTISASSEMGKGTTFTFTLP 737 >gi|86158415|ref|YP_465200.1| signal transduction histidine kinase NtrB [Anaeromyxobacter dehalogenans 2CP-C] gi|85774926|gb|ABC81763.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-C] Length = 457 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + A+ + + + H+I +P+ + +LELL E D I + Sbjct: 220 RERMVRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSADARHSDIVTEMQHQVR 279 Query: 63 --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 L F R A S D L + +I V + Sbjct: 280 RLTHTMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQSRDGTIELVPELSPGLPAVLA 339 Query: 111 LSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ LN+ + A ++ + +T+ + ++ G + QI Sbjct: 340 DPSQLEQVFLNICLNACQAMIATRRGGVLTVRSRVGDGTVSVEVEDTGPGI-PADLRAQI 398 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ + + + L+ Sbjct: 399 FKPFFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQ 445 >gi|323498274|ref|ZP_08103276.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sinaloensis DSM 21326] gi|323316702|gb|EGA69711.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sinaloensis DSM 21326] Length = 602 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 66/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54 + + + + L L + + I H++ +P+ AI + + L + ++ L R Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLAKQKLDRVDENLSR 417 Query: 55 LS--SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVS- 103 +S + ++ + S D + + V+ V V Sbjct: 418 VSSLTDRMAKISSQLKSFTRKSDSNDVHLMELTPIVISAKELVAPQIKSYRVELTVNVDN 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161 + + ++L+NL A ++ + + + NG Sbjct: 478 LNVRAEINAIQVEQVLINLLTNAAQAVADLPERQVQLSSAQFGEFVDIYIDDNGPGIDSK 537 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + +L + L Sbjct: 538 QAHQ-LFEPFYTTKKNGLGLGLSISQQIIQAMHGQLSVSQSPLGGARFTMRLP 589 >gi|218895704|ref|YP_002444115.1| sensor histidine kinase [Bacillus cereus G9842] gi|218540583|gb|ACK92977.1| sensor histidine kinase [Bacillus cereus G9842] Length = 463 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 296 QIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ D +++ G + + Sbjct: 356 NILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRS 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 454 >gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 346 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 61/217 (28%), Gaps = 24/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRLAFG 72 + H++ +P+ +I +E L + +E+ + +I + ++ + Sbjct: 126 FVGNVSHELRTPLTSIKGFVETLLDGAMENSDTCRRFLSIIDTETNRLTRLIEDLLTLSS 185 Query: 73 YTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILL 120 + + +K + V + + ++ + Sbjct: 186 IESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHVEFIHPYPMPLIQADEDLLGQVFI 245 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A PR GK+ I Q + I ++K +G E ++ + Sbjct: 246 NLLDNAIKYTPRQGKIVIQCQRRDSRIITTVKDSGMGI-PHESLPRVFERFYRVDKARSR 304 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V + + + + Sbjct: 305 QQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGV 341 >gi|330811773|ref|YP_004356235.1| Two-component sensor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379881|gb|AEA71231.1| Two-component sensor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 984 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIR 54 + S L ++ L + + H+I +PI I + L E +D ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGELTEISGQILEQTK 804 Query: 55 LSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V Sbjct: 805 RVSRIVQSLMSFAHAGGHQHNDEPVCLAEVAQDAIGLLALNRRNFEVQFFNLCDPDHWVD 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + ++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVKSEAFEHTVDLIVEDEGSGIPQN-IMDRLFE 923 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADVQSQRGTRIRVTLPR 975 >gi|320355414|ref|YP_004196753.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123916|gb|ADW19462.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 608 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 22/225 (9%), Positives = 55/225 (24%), Gaps = 28/225 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +PI AI +E L ++ + ++ + + + Sbjct: 373 FVANVSHELKTPITAIKGYVETLLDGALEDQDNARRFLSIVVRQANRLDAIVDDLLTLSR 432 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------SWTGEKIDLSRERAKIL 119 + +V + + V + + Sbjct: 433 IEDREQRRDISLTVAEVGPVLESALQTCAVQADEKGIIIQVESDEEWYAPINQPLLEQAV 492 Query: 120 LNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN 171 +NL A A P+G + + S+ NG F + + Sbjct: 493 INLLGNAIAYSPQGSLITLRCQGSRNRQGEEFVHLSVIDNGPGIAKEHLPRLFERFYRCD 552 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + E + +L Sbjct: 553 KARSRDQGGTGLGLAIAKHIAQAHNGTVEVESSLGKGSTFTLILP 597 >gi|300118415|ref|ZP_07056161.1| sensor histidine kinase [Bacillus cereus SJ1] gi|298724200|gb|EFI64896.1| sensor histidine kinase [Bacillus cereus SJ1] Length = 263 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 33 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 89 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 90 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 149 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + G + V++ ++ I S+ NG E + Sbjct: 150 TIKGDENLLHQVWSNIFTNSIKFSNDDGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 208 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 209 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 263 >gi|317152718|ref|YP_004120766.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942969|gb|ADU62020.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 497 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 64/229 (27%), Gaps = 16/229 (6%) Query: 2 AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLEL------LDEV--GIEDEVM 50 +++ L + L + + H+I P+ I +L L + ++ Sbjct: 261 RQSLEQQLRQADRLAKIGQFSAGLAHEINEPLANILGFAQLALQAKSLSDQVVNDLKNIV 320 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106 + + F R D + ++ E + V Sbjct: 321 DSSLHAREIIRKVMFFSRQMPPQFVLTDLNQTIRQALRITEVGAKRNNIEVVCELDENLP 380 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++++NL A ++ +GG +T+ + ++ ++ G E Sbjct: 381 RVMADPQHITQVVVNLVANAIQAMEKGGVLTVKTINYNDDAYIVIEDTGPGIPPEELKQI 440 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D + V + ++ + + Sbjct: 441 FNPFYTTKDVDKGTGLGLSVVHGIVKAHEGFIQVDSTPGKGTRFEVAFP 489 >gi|229010081|ref|ZP_04167295.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048] gi|228751214|gb|EEM01026.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048] Length = 421 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 15/219 (6%), Positives = 50/219 (22%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIASKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260 Query: 68 RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++ + L V+ + + + +++ Sbjct: 261 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 320 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 321 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 380 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH + L Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419 >gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 604 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 ++I + + + H++ +P+ I E L + E +I + Sbjct: 363 QDITTQKKMEQMRREFLASVSHELRTPLSFIQGYGEALADGLATGEKERQEYTGIILAEA 422 Query: 58 MSAIIRLKFMRLAFGYT---------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + ++V Sbjct: 423 NRLRRLVDDLFDLNKMAAGHLPLELAEVDPGELVTGVARKYQPLLAEHGLVLEVELEPYL 482 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + + ++L+NL A GG++TIS + E S+ G E Sbjct: 483 PPVWADAGRLEQVLVNLLDNARRHTSPGGRITISAGLAGRELKISVADTGKGIPAGELPY 542 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V L + R+ + S L Sbjct: 543 IWERFYKVDKSRSRGDSGSGLGLAIVKGLVEAHGGRVEVVSEPGRGSIFSFYLP 596 >gi|86146009|ref|ZP_01064336.1| signal transduction histidine kinase [Vibrio sp. MED222] gi|85836214|gb|EAQ54345.1| signal transduction histidine kinase [Vibrio sp. MED222] Length = 658 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + + + L AL L + I H+I +P I ++EL+ + Sbjct: 413 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVARVDEEVHAI 472 Query: 50 MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 M+ I L++ R + + + + + Q++ Sbjct: 473 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKKGIVYVSQLNA 532 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M A ++ G + I ++ G Sbjct: 533 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGVSHGAIVHVEDEGCGI- 591 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I + D + + + + E S L+ Sbjct: 592 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIRVESEVGKGSRFSIYLQ 646 >gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 2028 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 66/232 (28%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSS 57 + + + L + + + HD+ SP+ AI S ELL + E E + IR S+ Sbjct: 781 LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 840 Query: 58 MSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + ++ + + +V Sbjct: 841 DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 900 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164 + L NL A P GG + + + + S+ G + Sbjct: 901 ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQP 960 Query: 165 TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V++ + H + + + R+ E S L Sbjct: 961 HIFDRYWHGVQNKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 1012 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 60/237 (25%), Gaps = 27/237 (11%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + +L L S + H+ +P+ I +E + + + L Sbjct: 1359 EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEKLDLVRR 1418 Query: 59 SAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +A+ K + A + VD ++ + + V Sbjct: 1419 NALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGLRLVVDCPP 1478 Query: 108 K----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 K++LNL A G + + +++ G E Sbjct: 1479 LPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHAV-LTVQDTGVGIPEEEL 1537 Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + I V L + + E + L + Sbjct: 1538 PRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAFTLRLPR 1594 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 63/218 (28%), Gaps = 26/218 (11%) Query: 21 RICHDIISPIGAIHNSLE-LLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-- 75 + H++ +P+ + +E L++ + + + + + + K + + + Sbjct: 375 NVSHELRTPLALMLGPIEDGLEDTEYPLPPKQRERQEVVHRNGLRLRKLVNMLLDFARME 434 Query: 76 ---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122 D ++ +A V K++LNL Sbjct: 435 AGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPEAVYVDPAMWEKVVLNL 494 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STI 176 A +G V I+++ + +++ G E +I + + Sbjct: 495 LSNALKFTLQGE-VRIALRWLGDRVELTVQDTGTGMPEAELP-RIFERFHRVEGARGRSH 552 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V L + + + + + L Sbjct: 553 EGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLP 590 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 61/239 (25%), Gaps = 33/239 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + +++ ++L + H++ +P+ A+ + + L E G E + + Sbjct: 1792 LRESVRVRDEFLNL-------VSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVK 1844 Query: 56 SSMSAIIRLK-----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + + + ++LA + + Q Sbjct: 1845 AQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVL 1904 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++L L A +DS + ++ +G Sbjct: 1905 TLNAPSPVMGYCDRARLHQLLEGLLDNALKFGAGKPIEVAVWRDSD-HALLTVMDHGAGI 1963 Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + E + + +A + + + + L Sbjct: 1964 EPEDEERIFGRFERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALP 2022 >gi|302037599|ref|YP_003797921.1| putative sensor histidine kinase FleS [Candidatus Nitrospira defluvii] gi|300605663|emb|CBK41996.1| putative Sensor histidine kinase FleS [Candidatus Nitrospira defluvii] Length = 429 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 70/230 (30%), Gaps = 19/230 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSM 58 ++ + ++ + + I H+I +P+G++ +L + + + + I ++ Sbjct: 165 EDRLQRRNRLEAMGQMVGNIAHEIRNPLGSVELFASMLRKDLRDQPHLRTYAEHISMAVQ 224 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDLSR 113 + L + + S + + + + + V+ + Sbjct: 225 AMDRLLSNLLVYTRPDCSRLAWLDTESLIREVLTLASHAMSPASIVVRCEVDPRVPKIWC 284 Query: 114 E---RAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++LLNL + A ++P ++ + ++ G Sbjct: 285 DGGKMKQVLLNLVLNAVQAMPEGGSLTLSARMAPAGISEAPAIQLTVSDTGTGIPLA-LQ 343 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ D + + V L + R+ E H Sbjct: 344 SRVFDPFFTTKDQGTGLGLAIVHALVEAHHGRIDVESRPGHGTSFVMTFP 393 >gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 632 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 20/228 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + L + L + + H+I +P+ AI +LL D+ E +++I ++ Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + M F + + + ++ Q S Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMNVKEVINEIVTSFRIKMPDNVALIAPQDSPEC 506 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ N A G +T++ + +E FS+ G+ E Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCITLAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D + + + + R+ Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612 >gi|239827208|ref|YP_002949832.1| histidine kinase [Geobacillus sp. WCH70] gi|239807501|gb|ACS24566.1| histidine kinase [Geobacillus sp. WCH70] Length = 418 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 83/223 (37%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++ + M++V+ L + I H+I +P+ + ++LL + + + + + Sbjct: 194 RSKLVKVEKMEVVSQLAASISHEIRNPLTVVKGFIQLLKTPSLSQDAKDRYIQIALDEIN 253 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112 + I +++ A + V+ L+ + +VI+ + + G + Sbjct: 254 RAEAIINEYLTFAKPASNKVERLMVDDQLRKVIQMLAPMAHMNSIEIVEELQPGAIVGNI 313 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG +TIS N I ++K G E+ + + Sbjct: 314 QYFQQCFLNLIKNSIEAMPNGGTLTISSFLHGNHVIITIKDTGVGM-TTEQMNRFGEPYF 372 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 373 STKEKGTGLGTMVAVKMIQTMQGTLHIQSEVNKGTTLTITFPK 415 >gi|138893858|ref|YP_001124311.1| sensory transduction histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196250568|ref|ZP_03149258.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134265371|gb|ABO65566.1| Sensory transduction histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196209917|gb|EDY04686.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 443 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 61/234 (26%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 M+K + + ++ L + + H++ +P+ + L+ IE E + ++ + Sbjct: 213 MSKQLQ---QAEEVRRRLMADVAHELRTPLTILRGKLDWFQQQRRPIEPEKLLPLQDELI 269 Query: 59 SAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ + + + E+ + Sbjct: 270 RLTRLVEDLHQLSLAEAGKLPLERKPTDMESLLQQLIERVAPSAEEKNIRIHLTCSTNYT 329 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ LNL + A P GG V + + + + ++ G P Sbjct: 330 TISVDPHRITQVFLNLLVNAIRYTPEGGTVNVVIDEEPSMLQIAVTDTGIGIAPEHLPFL 389 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + + L + Sbjct: 390 FHRFYRTDEARTRNRGGTGLGLAIANEFVSAHGGTIDVHSTPGQGTTFLVKLPR 443 >gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1991 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 66/232 (28%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSS 57 + + + L + + + HD+ SP+ AI S ELL + E E + IR S+ Sbjct: 744 LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 803 Query: 58 MSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + ++ + + +V Sbjct: 804 DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 863 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164 + L NL A P GG + + + + S+ G + Sbjct: 864 ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQP 923 Query: 165 TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V++ + H + + + R+ E S L Sbjct: 924 HIFDRYWHGVQNKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 975 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 60/237 (25%), Gaps = 27/237 (11%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + +L L S + H+ +P+ I +E + + + L Sbjct: 1322 EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEKLDLVRR 1381 Query: 59 SAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +A+ K + A + VD ++ + + V Sbjct: 1382 NALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGLRLVVDCPP 1441 Query: 108 K----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 K++LNL A G + + +++ G E Sbjct: 1442 LPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHAV-LTVQDTGVGIPEEEL 1500 Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + I V L + + E + L + Sbjct: 1501 PRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAFTLRLPR 1557 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 63/218 (28%), Gaps = 26/218 (11%) Query: 21 RICHDIISPIGAIHNSLE-LLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-- 75 + H++ +P+ + +E L++ + + + + + + K + + + Sbjct: 338 NVSHELRTPLALMLGPIEDGLEDTEYPLPPKQRERQEVVHRNGLRLRKLVNMLLDFARME 397 Query: 76 ---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122 D ++ +A V K++LNL Sbjct: 398 AGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPEAVYVDPAMWEKVVLNL 457 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STI 176 A +G V I+++ + +++ G E +I + + Sbjct: 458 LSNALKFTLQGE-VRIALRWLGDRVELTVQDTGTGMPEAELP-RIFERFHRVEGARGRSH 515 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V L + + + + + L Sbjct: 516 EGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLP 553 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 61/239 (25%), Gaps = 33/239 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + +++ ++L + H++ +P+ A+ + + L E G E + + Sbjct: 1755 LRESVRVRDEFLNL-------VSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVK 1807 Query: 56 SSMSAIIRLK-----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + + + ++LA + + Q Sbjct: 1808 AQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVL 1867 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++L L A +DS + ++ +G Sbjct: 1868 TLNAPSPVMGYCDRARLHQLLEGLLDNALKFGAGKPIEVAVWRDSD-HALLTVMDHGAGI 1926 Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + E + + +A + + + + L Sbjct: 1927 EPEDEERIFGRFERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALP 1985 >gi|78186756|ref|YP_374799.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78166658|gb|ABB23756.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 738 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 70/244 (28%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 M +N + ++++ L I HD + + I EL L E E + + + Sbjct: 486 MLENKLRDRQKIEMLGTLAGGIAHDFNNLLTPIIGYSELVLESLPEKSELGESLNTVIKA 545 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109 +M ++ M + L I DF + + ++ + Sbjct: 546 AMRGKKLIRQMLMFGRNDTPSLRPCQLKPILDEAMDFLRPSIPSTVRMEILIADFSDAVM 605 Query: 110 DLSRERAKILLNLFMVAHASLPR-----------------GGKVTISVQDSKNENIFSLK 152 + +I+LNL A ++ + + + +++ Sbjct: 606 CDPMQIQQIILNLCTNAWQAMVNETGTVSVELSKTTAENAMAAINKPLLRDQVYARITVR 665 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +G + D + + V + +K + E + ++ Sbjct: 666 DDGTGMSKT-VSDCMFDPFYTTKEVGKGTGLGLSVVYGIVKAHKGEISVESTEGSGTAVT 724 Query: 211 ALLE 214 L Sbjct: 725 VFLP 728 >gi|297530823|ref|YP_003672098.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297254075|gb|ADI27521.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 430 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 64/206 (31%), Gaps = 10/206 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + I H+I +P+ ++ ++++ E ++ + + L + Sbjct: 211 LAAGIAHEIRNPLTSMKGFIQMMQETREVNDHYMRIMLSELGRINQIVSELLVLAKPQSH 270 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + + +I ++ + + ++LLN+ A Sbjct: 271 DYRPFLLDEAISYVISLIGHEATLNSVSISVHNTAPKACVYGDQNQIVQVLLNVMKNAIE 330 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG + + V ++ + + G E+ +I + + + Sbjct: 331 AMPDGGILYVHVAEADGKIYVDVADTGVGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + E+K + E + Sbjct: 390 IVQEHKGTMRIESEVGKGTTVHLTFP 415 >gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] Length = 618 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ +I + E L + I E + +I + + + + Sbjct: 382 FVSNVSHELRTPLTSIKSYTEALVDGAWENKEIAPEFLNVIETETDRMMRMITDLLNLSR 441 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 V ++ D+ + + + R+ T + + + Sbjct: 442 MDQNRLELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQRNLWVEIDQDKM 501 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++L N+ A P GG++ + + ++ + I S+ G + Sbjct: 502 TQVLDNIINNAIKYSPDGGRIIVRLMETHTDLIVSVSDEGLGVPRKDIPHLFDRFYRVDK 561 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ I++ L Sbjct: 562 ARSRAMGGSGLGLAISKEVVQLHGGKIWVNSIENKGSTFFISLP 605 >gi|224477937|ref|YP_002635543.1| two-component sensor histidine kinase [Staphylococcus carnosus subsp. carnosus TM300] gi|222422544|emb|CAL29358.1| two-component sensor histidine kinase [Staphylococcus carnosus subsp. carnosus TM300] Length = 614 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 18/238 (7%), Positives = 70/238 (29%), Gaps = 27/238 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 ++ + + + H++ +P+ ++++ LE L+ + I + + + R ++ Sbjct: 365 DVTEQQQNERDRREFVANVSHELRTPLTSMNSYLEALEEGAWKDEEIAPQFLSVTREETV 424 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------- 105 I + + + + +++++ + ++K + Sbjct: 425 RMIRLVNDLLQLSKMDNANEENASNQVTKEIVDFNMFINKIINRHEMAAKDVTFVRDIPE 484 Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFP 161 + ++ N+ A +V V+ + N +++ NG Sbjct: 485 ETIFTEIDPDKMTQVFDNVITNATKYSRGDKRVEFHVKPNPLYNRMTIRIKDNGIGIPIT 544 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + R+ ++ + L Sbjct: 545 KVDKIFDRFFRVDKARARKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 602 >gi|213161648|ref|ZP_03347358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 393 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 168 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 227 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 228 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 287 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 288 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 346 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 347 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 386 >gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 595 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 71/223 (31%), Gaps = 20/223 (8%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69 +L + + + H++ +PI A+ ++++L + + D + L+ + S L + Sbjct: 373 ELKSDFIATLSHELRTPITAVKGTVDILRKEVLGKLNDSQLDLLETAGKSIERLLNQVNE 432 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSR 113 + + L E E+ I + S Sbjct: 433 LLDFAKMENGKFELMYSEFDFEELIREATHIVDSLINKKKLELAVEIHAGENRTMRADRE 492 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 +ILLNL + P+ GK+TI NE + G ++ Sbjct: 493 RILQILLNLLSNSIKFTPQRGKITIKAYMEDNEMTIEVIDTGIGIPVEKQKNIFTKFYQV 552 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I+ + L + ++ E + V ++K Sbjct: 553 NNQINGTGLGLAISRQLIEMHGGKISFESTEGEGSVFKFTVKK 595 >gi|149182171|ref|ZP_01860653.1| Sporulation kinase [Bacillus sp. SG-1] gi|148850122|gb|EDL64290.1| Sporulation kinase [Bacillus sp. SG-1] Length = 412 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 78/226 (34%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57 + N L + I H++ +P+ ++ +L ++ + E ++ Sbjct: 183 LRLNDQLR-EKEKLAVIGRFATSISHEVRNPLASLKGFTQLQHEKHPEDSEYYTIMTNEI 241 Query: 58 MSAIIRLKFMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L + + G + + + + A ++ +Q++ + + Sbjct: 242 ERISSLLDDLLVIGKPKGLNLKSHDPKDIIEYVVKLMESDANNQNIQLTGEIKSGLPKID 301 Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV 168 ++L+NL A ++P GG+VT+ + ++ + S++ G E Q+ Sbjct: 302 CDEKHLKQVLINLIKNAMEAMPAGGEVTVKAEMGEEDTVLLSIRDEGEGI-SKENLEQLG 360 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + E+ + + ++ +S L Sbjct: 361 TPFHTTKSDGTGLGLMVSFKIIEEHSGTIRYDSVEGQGTTVSITLP 406 >gi|71908200|ref|YP_285787.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71847821|gb|AAZ47317.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 623 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 79/233 (33%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 MA+ + + + A+ + S I HD+ + + ++ +L++LDE ++ MQ+ Sbjct: 376 MAEQLRLAGKNSEQSAMGQMASMIAHDLRNALSSVKMNLQILDEHHRKEGDMQIENCEIA 435 Query: 57 ----SMSAIIRLKFMRLAFGYTGSVDS----LIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 I + A T D ++ + V++ + Sbjct: 436 LGQVRYMETILNDMLTYARPGTAEFDWVDLGDTLRAASVSLLPEITRKSVEVRMEGEEKL 495 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV-------TISVQDSKNENIFSLKINGNLARFP 161 + +R K+L V ++ + + +S+ + +G P Sbjct: 496 PTIMADRNKLLQLFQNVLGNAIYAVPEWGLIIIRTRCLLHESQPSVEIRFEDDGPGI-SP 554 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D ++ + V + ++ ++ + DH + +L Sbjct: 555 QIADKVFDPFFTTSSRGTGLGLAIVQRIVAQHGGQVYLDSERDHGTTVVVVLP 607 >gi|239637304|ref|ZP_04678291.1| sensor protein YycG [Staphylococcus warneri L37603] gi|239597141|gb|EEQ79651.1| sensor protein YycG [Staphylococcus warneri L37603] Length = 608 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+E + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDDNLAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ ++ ++ N+ Sbjct: 439 MDNESDQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597 >gi|261419208|ref|YP_003252890.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319766024|ref|YP_004131525.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261375665|gb|ACX78408.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317110890|gb|ADU93382.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 430 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 64/206 (31%), Gaps = 10/206 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + I H+I +P+ ++ ++++ E ++ + + L + Sbjct: 211 LAAGIAHEIRNPLTSMKGFIQMMQETREVNDHYMRIMLSELGRINQIVSELLVLAKPQSH 270 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + + +I ++ + + ++LLN+ A Sbjct: 271 DYRPFLLDEAISYVISLIGHEATLNSVSISVHNTAPKACVYGDQNQIVQVLLNVMKNAIE 330 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG + + V ++ + + G E+ +I + + + Sbjct: 331 AMPDGGILYVHVAEADGKIYVDVADTGVGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + E+K + E + Sbjct: 390 IVQEHKGTMRIESEVGKGTTVHLTFP 415 >gi|228994818|ref|ZP_04154616.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM 12442] gi|228764926|gb|EEM13682.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM 12442] Length = 449 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + +S + S + H+ SP+ +I + L + S Sbjct: 207 MAKRLR---NSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDLTKSEQTHYLEIIESE 263 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D + D + W +L+ E Sbjct: 264 SRRMSSLCKQLLILASLDKEDLTLRKQSFDLGNQIKDTIFMLEWEWRTKELAVEMDVPNM 323 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++ +NLF + GG + ++ + E S+ G E Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + ++ + V + + + + + S L K Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTIFSIYLPK 437 >gi|229173899|ref|ZP_04301437.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3] gi|228609537|gb|EEK66821.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3] Length = 448 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +++I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLRIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S K + L + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ + S+ NG E+ + Sbjct: 335 TIQGDENLLHQVWSNVFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGM-EREEMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELPK 448 >gi|118477413|ref|YP_894564.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196047040|ref|ZP_03114259.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|118416638|gb|ABK85057.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196022144|gb|EDX60832.1| sensor histidine kinase [Bacillus cereus 03BB108] Length = 357 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 71/234 (30%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + K Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVQKVLDLHRGEIKVESEEGNGTEFIVCIPK 353 >gi|220907210|ref|YP_002482521.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219863821|gb|ACL44160.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 591 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMD-LVAL-----LCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQ 51 M + + + +L L + I H+I +P+ + N+ + L+ E + Sbjct: 339 MTEQKQAEQERLKAIASLAEVGELAAMIVHEIRNPLTTVWMGLNAFQRLELPHNYRERLD 398 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVS 103 L + L+ + L I L + + K + Sbjct: 399 LAMAEAERLRNLLREILLYAKPQALDPQEIDLNPFIRNILEPMRSLPIALGRSLKFIPAD 458 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++++NL A ++ G +VT S++ + NG PE Sbjct: 459 HPLRVVGDQAKLKQVVINLVDNACEAIGEGEEVTCSLERDGRHAHIRIHNNGPAI-PPEL 517 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + + L D+ + L Sbjct: 518 LDRLTKPFYTTKAAGTGLGLAIVKRIVEAHSGELDICSSPDNGTTVRVGLP 568 >gi|217958236|ref|YP_002336782.1| sensor histidine kinase [Bacillus cereus AH187] gi|229137450|ref|ZP_04266061.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26] gi|217065748|gb|ACJ79998.1| sensor histidine kinase [Bacillus cereus AH187] gi|228646008|gb|EEL02231.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26] Length = 463 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 57/219 (26%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 ++ + L I + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454 >gi|153002988|ref|YP_001377313.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026561|gb|ABS24329.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 497 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 17/229 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 A+ L + L L + + H+I + + I + D ++ + Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHEIGNSLNVIRGYASVAARELPADAEVKSDVEAIRR 314 Query: 60 A--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L F R + + L + +V+ A +V + Sbjct: 315 EVTRAAGLIERFLVFARARTVHPIAQPVEPILREAVEVVGPAAAHANVERVVEIAPALPE 374 Query: 112 SRER----AKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + LNL + A ++ G + + + + + +G + Sbjct: 375 VVADGELLRQAFLNLCVNAVQAMQERGGGTLVARARREGDGLVVEVSDSGPGL-PRDIAA 433 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + V A + + E H L Sbjct: 434 HVFDPFFTTKANGTGLGLAIVRQAAEAHGGTVEVESAPGHGATFRIRLP 482 >gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 2607 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 74/236 (31%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56 ++I + + + S + H++ +P+ AI +++L G + + +I+ + Sbjct: 2360 RDITREIEADEAKRQFISDVSHELRTPLTAIKGYVDVLLLSGTQTLTSDQVSYLGIIKNN 2419 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + ++ + S + + ++ D V+V + Sbjct: 2420 TNRLKALIEDILEFSRPDASKKLNFTRLSIPEVIDEVVSSLRLEYQRKDMSVEVDAPHDL 2479 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164 + ++ +++ NLF A GG + + + N ++ G PE+ Sbjct: 2480 PTVMADQKRITQVVFNLFSNAVKYTFEGGHIHVRAFLNRANMFQVDVEDTGVGM-SPEQR 2538 Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L ++ + S +L Sbjct: 2539 KKLFRPFYRADNPLRDVAGGTGLGLSIAKALIEQHGGEMWVTSEIGKGSTFSFILP 2594 >gi|289550735|ref|YP_003471639.1| Staphylococcal respiratory response protein SrrB [Staphylococcus lugdunensis HKU09-01] gi|289180267|gb|ADC87512.1| Staphylococcal respiratory response protein SrrB [Staphylococcus lugdunensis HKU09-01] Length = 588 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 21/218 (9%), Positives = 57/218 (26%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ + + + Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPEEIKESLSIVLDETNRLNRLVNELLNVARMD 429 Query: 74 -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + Q D + S ++L NL Sbjct: 430 AEGLSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYDSDRIDQVLTNL 489 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177 A G ++I+ +D+ N+ + G+ F + + Sbjct: 490 IDNATRYTQPGDTISITSEDTDKYNVLHINDTGSGIAPEHLNLVFDRFYKVEASRTRGKQ 549 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + + L K Sbjct: 550 GTGLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587 >gi|262394273|ref|YP_003286127.1| signal transduction histidine kinase [Vibrio sp. Ex25] gi|262337867|gb|ACY51662.1| signal transduction histidine kinase [Vibrio sp. Ex25] Length = 659 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ D+ E + I Sbjct: 413 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEVDAI 472 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 473 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 532 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 +IL+NL M A ++ G + + G Sbjct: 533 HTSVEINRHHLLQILVNLQMNAIHAMNGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 591 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + + + + + L E S L K Sbjct: 592 KPENLNRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGKGSKFSIYLPK 647 >gi|206977479|ref|ZP_03238374.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217959464|ref|YP_002338016.1| sensor histidine kinase [Bacillus cereus AH187] gi|206744329|gb|EDZ55741.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217066231|gb|ACJ80481.1| sensor histidine kinase [Bacillus cereus AH187] Length = 357 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 352 >gi|62182624|ref|YP_219041.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130257|gb|AAX67960.1| sensory kinase in two component regulatory system with HydG [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717121|gb|EFZ08692.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 554 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 329 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMTKEADRLNRV 388 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 389 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 448 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 449 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 507 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 508 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547 >gi|229592620|ref|YP_002874739.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229364486|emb|CAY52325.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 984 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGEIIEISGQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V Sbjct: 805 RVSRIVQSLMSFAHAGGHQNQDEAVCLAEVAQDAIGLLALNRRNFEVQFFNLCDPDHWVD 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P GG V + + ++ ++ G+ ++ + Sbjct: 865 GDSQRLAQVLINLLSNARDATPAGGAVRVKTEVFEHTVDLIVEDEGSGIPQN-IMDRLFE 923 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADTESQRGTRIRVTLPR 975 >gi|229523609|ref|ZP_04413014.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis VL426] gi|229337190|gb|EEO02207.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis VL426] Length = 677 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + + + L AL L + I H+I +P I + EL+ + +E + I Sbjct: 430 LNQTRNKLVVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGADASRVEEEIDAI 489 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + + + + + + ++ +++ Sbjct: 490 LLQIERIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGSKKRDIEFVLELKA 549 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M A ++ + + ++ G Sbjct: 550 HNSVEVNRHQLLQILVNLQMNAIHAMNGKGRITIRSEDWVEEGQNRGAVIHIEDQGCGI- 608 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + L + + + S L Sbjct: 609 KPENLKRIFDPFYTTKREGTGLGLSVSQSLLSQAGGEIKVQSELGVGSTFSIFLP 663 >gi|197117068|ref|YP_002137495.1| GAF/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086428|gb|ACH37699.1| sensor histidine kinase response regulator, GAF and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 770 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 61/242 (25%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--------IR 54 + M+ +A L I HD + + +I E+ + + ++ Sbjct: 382 ERQLRQAQRMEAIATLAGGIAHDFNNNLASIITCTEMARDDVPPESPLRELLDVVLKSSY 441 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDL 111 L F V + + ++ ++ ++ + Sbjct: 442 RGRKLVKQILTFCCQGEQERQPVQIEPIVTECLNLMRASLSSSISIRTEMGENLGLIMAD 501 Query: 112 SRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLKING 155 + +I++NL A ++ G + S ++K G Sbjct: 502 PTQIHQIIMNLIANASHAMRHKGGMLDVAVENVGLDTAAVAGFPDLPSGRYLKLTVKDTG 561 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I D + + + V + + + L Sbjct: 562 HGMDQK-TMERIFDPFFTTKSHSEGTGLGLSVVHGIVRNHGGAISVSSKPGGGATFEVYL 620 Query: 214 EK 215 + Sbjct: 621 PR 622 >gi|94968760|ref|YP_590808.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94550810|gb|ABF40734.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 594 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLE-------LLDEVGIEDEVMQ 51 + + + S + A L R+ H++ +P+ + ++E ++ E E Sbjct: 351 LLEQRERLVQSERVAAWRELARRLAHELKNPLFPLQLTVENMVKAREVMPEEFDEIFHES 410 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L + ++ R + L + E V + K+++ Sbjct: 411 ATTLMAEIQNLKGIIQRFSDFSKMPQPQLQAVKVNEIVERVATLHAPALANREHPVKMEM 470 Query: 112 SRER------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + L NL + A ++P+GG +T+ + + G Sbjct: 471 QLDAAVPVIAADPELLHRSLSNLVLNALDAMPQGGTITMRTAAREETVRIEVADTGTGL- 529 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E+ ++ + + V + ++ + E L + Sbjct: 530 TKEECERLFTPYYTTKQHGTGLGLAIVQSVITDHGGTIGVESAPGQGATFIIELPR 585 >gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 672 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 59/237 (24%), Gaps = 26/237 (10%) Query: 4 NICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55 + + + + + H++ +P+ +I +LL + ++ I Sbjct: 281 REQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRARRIDEKAATGALESIER 340 Query: 56 SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106 ++ ++ + ++ + + V +++ Sbjct: 341 NARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAVEAVQPAAAVKQIQLRCRIDA 400 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +I NL A P+GG V + + + ++ NG Sbjct: 401 AVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQGEIHAQLVVRDNGIGISPAFL 460 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + E + L Sbjct: 461 DQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTAAAESAGKGQGATFTVRLP 517 >gi|75762098|ref|ZP_00742003.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490416|gb|EAO53727.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 472 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 19/233 (8%), Positives = 70/233 (30%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60 + + +L M + + + H++ +P+ + ++ L E ++ ++ + + + Sbjct: 231 QTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDES 290 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK-- 108 ++ F + E + + + ++ ++VS++ Sbjct: 291 DYITNLVQDLFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTL 350 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++N+ A+ + IS+ D +++ G + Sbjct: 351 LVNLDEQRFEQVIVNILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHI 410 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + D+ L Sbjct: 411 FDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 463 >gi|116748064|ref|YP_844751.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697128|gb|ABK16316.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 557 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIE------------DEVM 50 + S + AL L + I H++ +P+ I + +LL E +E ++ Sbjct: 320 VQSSKMAALGKLAAGIAHEVNNPLAVIKEKVGWMKDLLSEEDVEASENFKEFDDAVKKID 379 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + + L F R V + + + + + ++ + + Sbjct: 380 YHVERARKVTHRLLGFARRMEPIQEQVTMNRVIEETVDFLKNEAHYRNIEIRTTLDPDMP 439 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKF 164 + + ++ LN+ A ++ + G +TIS E S+ +G E Sbjct: 440 TTTSDSSQLQQVFLNILNNAIDAIGKNGVITISTGYDLKNRELSVSIADDGPGI-PSEVL 498 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + + + S L Sbjct: 499 GRVFDPFFTTKEVGKGTGLGLSISYSIVEKLGGTIKVASQVGKGTTFSIHLP 550 >gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5] Length = 651 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 57/230 (24%), Gaps = 21/230 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + L + + H+I +P+ AI LL E E + +R+ + Sbjct: 281 AKNKAEVSDRLKSAFL--ANMSHEIRTPLNAIVGFSNLLAETDDIGERREYMRVVEENNE 338 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + G VD + + + + + Sbjct: 339 LLLKLISDILDLSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKVKDKPVELIFGEHDAQC 398 Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ N A G + F ++ G+ E Sbjct: 399 CVVGDKNRLIQVITNFINNAVKFTDEGSITLGYRTEGGELL-FHVEDTGSGI-SEEHRQS 456 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D V S + + + R+ E + Sbjct: 457 IFDRFVKLNSFAQGTGLGLSISKSIVEQMGGRIGVESEVGRGSRFWFTIP 506 >gi|303326572|ref|ZP_07357015.1| putative periplasmic sensor signal transduction histidine kinase [Desulfovibrio sp. 3_1_syn3] gi|302864488|gb|EFL87419.1| putative periplasmic sensor signal transduction histidine kinase [Desulfovibrio sp. 3_1_syn3] Length = 485 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 67/234 (28%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----------D 47 + + + L +L L + I H + +P+ I S +LL E G Sbjct: 246 LESSQNQLVQEKKLASLGVLTAGIAHQLNNPLNNIFTSCQLLRESGAHGGDAGFPAEMLR 305 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + Q + + L F R + V +G ++ R+ + + Sbjct: 306 NIHQEVLRARDIVRGLLDFARQSDFSLKPVALADVVGRAVALVAGETPPGLRIDIDVPPD 365 Query: 108 K--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE 162 R ++ +NL + A ++ R + + ++ +G+ Sbjct: 366 LVLPADGRRLQEVCINLLLNAVQAVSRLPGRISVTARRDEAAAQAVLRVRDSGDGIPEAS 425 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + E + + L Sbjct: 426 LG-RIFDPFFTLKGVGKGTGLGLSVAFGIIRRHGGTISVESGEGEGSCFTVRLP 478 >gi|289432115|ref|YP_003461988.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] gi|288945835|gb|ADC73532.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] Length = 581 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51 + +++ + + I H++ +PI ++ E L E D + Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHL 405 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106 + + + G + ++ + V Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITLGVELPE 465 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++L+NL A P+GGK+ I V+ + + +G + Sbjct: 466 TLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRTQSQTLVVYVTDSGIGIPEDDL 525 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + E + S L Sbjct: 526 TRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLP 579 >gi|220909800|ref|YP_002485111.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219866411|gb|ACL46750.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 480 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 +A+ LS + L + + H++ +P+ + LE L + E ++ Sbjct: 242 LAQTFNLMLSRLADAWDQQRQLLNDVSHELRTPLTLVMGYLESLIRRSTNLSSTQLEALE 301 Query: 52 LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + AI L+ + ++ + + + + Sbjct: 302 TAASEANRAIRLLQDLLDLARADSGYLHFRLETLRLNDLIVEAVDMAKQVSHRSILAIAP 361 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E + + LLNL A V IS+ ++ + I + G E Sbjct: 362 TEVEAMVDRDRLRQTLLNLLDNAIKYSQPDQPVYISLSSTETQAIIEITDQGVGISLAEQ 421 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + H + V L ++ + + L K Sbjct: 422 SRIFDRFYRVDESRARTTGGHGLGLAIVKSLVEGMGGKITVLSEPNQGSTFTITLRK 478 >gi|196040855|ref|ZP_03108153.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196028309|gb|EDX66918.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 484 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKIMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478 >gi|218897651|ref|YP_002446062.1| sporulation kinase B [Bacillus cereus G9842] gi|218540668|gb|ACK93062.1| sporulation kinase B [Bacillus cereus G9842] Length = 419 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + + + L + +I ++ + Sbjct: 250 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L+ K Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMYGNLKIRSIVSKGTTLTITFPK 413 >gi|229139865|ref|ZP_04268430.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26] gi|228643530|gb|EEK99796.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26] Length = 448 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|258405345|ref|YP_003198087.1| multi-sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797572|gb|ACV68509.1| multi-sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 862 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------M 50 K + + +VAL + S I H+I +P+G I +LL E Sbjct: 615 QKKMDQKIQQTEKMVALGQVSSGIAHEINNPLGIILCYTDLLKRQLKESPQAVTDVDVIE 674 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKI 109 Q R L+F + + ++ Q + + Sbjct: 675 QQARNCKKIVTDLLQFSKKQESPKSPEQINAIIQNVAQILRHQLHKNGIDFHLQLDPTLP 734 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEKF 164 + KI + + ++ G+ VQ+ ++ NG Sbjct: 735 LVVVSADKIQQVVVNLVLNAMQAVGEQGRIVVESFVQEEGRRVALAVWDNGPGVESS-IR 793 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + ++ + E L Sbjct: 794 QKIFDPFYSTKRVGEGTGLGLSVSYGIIQDHGGEITLESEQGQWTRFIVSLP 845 >gi|222096717|ref|YP_002530774.1| sensor histidine kinase [Bacillus cereus Q1] gi|221240775|gb|ACM13485.1| sensor histidine kinase [Bacillus cereus Q1] Length = 458 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|222094404|ref|YP_002528463.1| sensor histidine kinase [Bacillus cereus Q1] gi|221238461|gb|ACM11171.1| sensor histidine kinase [Bacillus cereus Q1] Length = 463 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 60/219 (27%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E + ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPKQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEENKRISITMEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454 >gi|206974651|ref|ZP_03235567.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|206747294|gb|EDZ58685.1| sensor histidine kinase [Bacillus cereus H3081.97] Length = 458 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|217960662|ref|YP_002339226.1| sensor histidine kinase [Bacillus cereus AH187] gi|217064570|gb|ACJ78820.1| sensor histidine kinase [Bacillus cereus AH187] Length = 458 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|289433638|ref|YP_003463510.1| two-component sensor histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169882|emb|CBH26422.1| two-component sensor histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 610 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T + ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ +NE S+ G + T + Sbjct: 503 IISNANKYSPDGGRISFYLKKYENEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600 >gi|71908630|ref|YP_286217.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71848251|gb|AAZ47747.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 524 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/254 (10%), Positives = 65/254 (25%), Gaps = 41/254 (16%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISP-------IGAIHNSLE----LLDE----- 42 + L S + A+ L + + H+I +P +G++ N E LLD Sbjct: 260 LQDAQSQLLQSEKMAAIGQLAAGVAHEINNPVGFVSSNLGSLKNYSEKMITLLDRCRSRE 319 Query: 43 ------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG 84 + E + + F + + G+ Sbjct: 320 ASEADFIAADFDYLKEDLADLLRESRDGLGRVTKIVSDLKDFAHIDEAAWQETNLNAGIE 379 Query: 85 DIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTISVQD 142 V+ + V + ++++NL + A ++ G +T+ Sbjct: 380 ATLNVVWHELKYKAEVVRELGELPPVTCIAAQIDQVVMNLLVNAAHAIETRGTITVRTGH 439 Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPE 200 + G P +I + + + + ++ R+ Sbjct: 440 DDAWVWIEVADTGKGM-TPAVIQRIFEPFYTTKPVGKGTGLGLSLSYDIVKKHGGRIEVN 498 Query: 201 IIDDHNVVLSALLE 214 + Sbjct: 499 SEPGKGSTFRVWIP 512 >gi|309791212|ref|ZP_07685744.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226774|gb|EFO80470.1| histidine kinase [Oscillochloris trichoides DG6] Length = 545 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 24/222 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 ++ + + H++ +P+ AI +LL + + E + I + + + Sbjct: 309 SMFLANMSHELRTPLNAILGYAQLLKMGVANNDPVSQQEFLDSILGAGRHLTSLISNVLD 368 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILL 120 Y G VD + ++ ++ +++S E + + K+ Sbjct: 369 FSKIEQGKIELYMGPVDVEPLIREVADIVHPLVKQQHNELRISIEPEIGTMLTDGPKLRQ 428 Query: 121 NLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172 L + + TI V + F++ G E ++ V Sbjct: 429 ILVNLLSNAAKFTEAGTISLHVCAAAEMIEFAVIDTGIGI-SAEHLGKLFQPFSQVDSSV 487 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D + L H + E +L Sbjct: 488 TRRVDGTGLGLALSRQLCHAMGGEISVESAVGQGSTFRVVLP 529 >gi|295705557|ref|YP_003598632.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294803216|gb|ADF40282.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 487 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 75/242 (30%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ 51 M K + +L+ + + + I HD+ +P+ IH E+L + + + Sbjct: 242 MRKELKQSLAKQWQLEEDRKDMTAAIAHDLRTPLTIIHGHTEILVEGSKKDPERLNRYLH 301 Query: 52 LIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV- 102 I +++ +I L ++ + +D + + + + + Sbjct: 302 TIYTNTLRSIQLLNQLQEVSVIENPGFAVKSEPIDINTFVYEKADEFQLLCQKKEITFIS 361 Query: 103 -----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + +++L N+ P G++ + +E IF + G Sbjct: 362 SIREADGPNQFYGDPQRISQVLDNIITNCIRYTPERGEIAWNTVIHHSEVIFEIHDTGPG 421 Query: 158 --ARFPEKFTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E+ + S H + Y + + + + + + + Sbjct: 422 FTLSNKEQLFKKFYREDASRTSGHGNLGLGLYIAHSIVKNHGGSITADNKETGGSLFKIV 481 Query: 213 LE 214 L Sbjct: 482 LP 483 >gi|228946855|ref|ZP_04109157.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812842|gb|EEM59161.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 448 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + + + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDIARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|229075210|ref|ZP_04208204.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18] gi|228707987|gb|EEL60166.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18] Length = 448 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDITVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELPK 448 >gi|229091660|ref|ZP_04222861.1| hypothetical protein bcere0021_24650 [Bacillus cereus Rock3-42] gi|228691605|gb|EEL45357.1| hypothetical protein bcere0021_24650 [Bacillus cereus Rock3-42] Length = 413 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112 + I ++ A + +D + ++ +VI + + + T + Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKIIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404 >gi|262198315|ref|YP_003269524.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262081662|gb|ACY17631.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 408 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 65/253 (25%), Gaps = 40/253 (15%) Query: 1 MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------- 50 +AK L + L L L + H+I +P+ I +++ L + + + + Sbjct: 152 LAKERAKQLAHADRLAMLGTLAGGVAHEINNPLSFISGNVQELRKNWPQIDQLLSEQIEA 211 Query: 51 ------QLIRLSSMSAIIRLKFMRLA-------------------FGYTGSVDSLIGLGD 85 +L L I V Sbjct: 212 RPDEAEELTYLQEDMTEILDGIHNGITRIAKIVSGLKTFVREKGADWAPFPVKLSFDGAM 271 Query: 86 IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDS 143 + + S++ ++L+NL + A ++ + Sbjct: 272 MLCRGAVREINVESDFPDDLPPVRGDSQQLEQVLVNLCVNASHAMEGRPDQKLWVRSWSE 331 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI 201 + ++ NGN E I + + + + ++ + Sbjct: 332 DGHVLITVTDNGNGI-PEENLESIWNPFFTTKDVGKGTGLGLSICQNIIQDHGGSIEASN 390 Query: 202 IDDHNVVLSALLE 214 +D+ + L Sbjct: 391 VDEGGARFTIRLP 403 >gi|218904373|ref|YP_002452207.1| sensor histidine kinase [Bacillus cereus AH820] gi|218538730|gb|ACK91128.1| sensor histidine kinase [Bacillus cereus AH820] Length = 458 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + + + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|220923122|ref|YP_002498424.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219947729|gb|ACL58121.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 663 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------------GIE 46 + + S L ++ + + + H+I +PI I +LE+ E + Sbjct: 423 LEDTRRQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREALGSAANEVKTEFDLI 482 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 D+ + + + + + A + + + V D V+++ Sbjct: 483 DQQVHRVNMIVTRLLQFARPEEYAGYVEAVAPAGVVADCLVLVRHLLERADVTVEIADEA 542 Query: 107 EKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160 + ++++NL + A ++P GG + + +D + G Sbjct: 543 TRTVEVSRTELQQVVINLMVNAIHAMPEGGVLRLETKDEDRSGTDGVAIKVVDTGVGIPT 602 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + L + + + L Sbjct: 603 DQLRKIFDPFFTTRTHGGTGLGLSISYTLMARYGGAITVDSEVGRGSAFTVWLP 656 >gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 873 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESLMI 618 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 676 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 724 >gi|317050641|ref|YP_004111757.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945725|gb|ADU65201.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 453 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 3 KNICFNLSS-MDLV--ALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVM 50 + + +S+ L + + H+I +P+ AI+ +++LL+E Sbjct: 216 RELQKRVSANEKLAYIGSISGSLAHEIKNPLNAINLNIQLLEEDLREETIDRDEAMSTCH 275 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------ 104 + + F+ + ++ + + V+E F + Sbjct: 276 VISDEVQRLNELLNDFLIYSRMHSPRLRHESITKTMGAVVELFRKTCMEKNIQLVLEKTS 335 Query: 105 --TGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLAR 159 + + ++L N+ + +L + + K ++ + NG Sbjct: 336 SRSDTISMDRNQIRQVLTNIIKNSIEALEKRSGGIITIAHSINRKRHHVIVIDDNGPGIS 395 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ ++ D + + + + + L I ++ L Sbjct: 396 PKDR-EKVYDLFYSTKKEGTGLGLPIAKNIVEAHGGSLEIRSILGRGTTVTITLP 449 >gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 808 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K S+ L + + H+I +P+ AI L+ E +E + + + Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493 Query: 63 RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L+ + +FG + + D + Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESLMI 553 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ NL A G F + G PEK ++ Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 611 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 659 >gi|228908873|ref|ZP_04072704.1| hypothetical protein bthur0013_30300 [Bacillus thuringiensis IBL 200] gi|228850740|gb|EEM95563.1| hypothetical protein bthur0013_30300 [Bacillus thuringiensis IBL 200] Length = 801 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTIVEVTLP 795 >gi|221636013|ref|YP_002523889.1| sensor protein CutS [Thermomicrobium roseum DSM 5159] gi|221157568|gb|ACM06686.1| sensor protein CutS [Thermomicrobium roseum DSM 5159] Length = 479 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 19/228 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSS 57 + + L + + H++ +P+ + ++ELL + ++ + Sbjct: 235 QQVEHALQAQR---RFVADASHELRTPLTTLRGNVELLQREPPLPLEEQRAILADVAAEI 291 Query: 58 MSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I ++ + V + D + + + Sbjct: 292 ERMIRLVRELLTLARADAGLRPRLEPVQLGSLVEDAVRQAQLLRPRPVARVRVERDVVVR 351 Query: 111 LSRERAKILLNLF-MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQ 166 R+ +L + A P G V +V + +++ G P F + Sbjct: 352 ADRDLLYQVLLILLDNALKYTPEDGMVEATVVVEQGRAGIAVRDTGIGIDPAIMPHIFER 411 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + + + L + + + + LL Sbjct: 412 FFRGDSARSGEGTGLGLAIAKSLLEAMRGEIRVVSRPGEGSIFTVLLP 459 >gi|108807080|ref|YP_650996.1| PAS [Yersinia pestis Antiqua] gi|108812985|ref|YP_648752.1| PAS [Yersinia pestis Nepal516] gi|166211373|ref|ZP_02237408.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str. B42003004] gi|167400352|ref|ZP_02305865.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424021|ref|ZP_02315774.1| sensory box histidine kinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|294503176|ref|YP_003567238.1| Pas [Yersinia pestis Z176003] gi|108776633|gb|ABG19152.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia pestis Nepal516] gi|108778993|gb|ABG13051.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia pestis Antiqua] gi|166207144|gb|EDR51624.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str. B42003004] gi|167050301|gb|EDR61709.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056870|gb|EDR66633.1| sensory box histidine kinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361213|gb|ACY57934.1| PAS protein [Yersinia pestis D106004] gi|294353635|gb|ADE63976.1| Pas [Yersinia pestis Z176003] Length = 604 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47 M + LVA+ L + + H+I +P+ +I + + E + Sbjct: 352 MREVRQLQEEIRRKEKLVAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 +++ + + + L +R + V+ + +I + + Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162 + LLNL++ A ++ R G + I++ +++ S+ G R + Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E++ R+ + Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582 >gi|30263182|ref|NP_845559.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47528547|ref|YP_019896.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186032|ref|YP_029284.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|165868690|ref|ZP_02213350.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167632195|ref|ZP_02390522.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167637220|ref|ZP_02395500.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170684831|ref|ZP_02876056.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170704948|ref|ZP_02895413.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|177650266|ref|ZP_02933267.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190564692|ref|ZP_03017613.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227813953|ref|YP_002813962.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229601422|ref|YP_002867446.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254685789|ref|ZP_05149648.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254723196|ref|ZP_05184984.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254738259|ref|ZP_05195962.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254742573|ref|ZP_05200258.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254752574|ref|ZP_05204610.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254761090|ref|ZP_05213114.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|30257816|gb|AAP27045.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47503695|gb|AAT32371.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49179959|gb|AAT55335.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|164715416|gb|EDR20933.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167514727|gb|EDR90093.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167532493|gb|EDR95129.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170129803|gb|EDS98665.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170671091|gb|EDT21829.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172084218|gb|EDT69277.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190564009|gb|EDV17973.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227004608|gb|ACP14351.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229265830|gb|ACQ47467.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 458 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + + + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|118579852|ref|YP_901102.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502562|gb|ABK99044.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 691 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 M +++ F M+ + LL I HD + + AI ++ L L ++ + Sbjct: 316 MEQDL-FKNQKMESIGLLAGGIAHDFNNLLAAIMGNISLASMLLQPGSRSVSLLAESEKA 374 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDL 111 + A + V L + I + F+ ++ + Sbjct: 375 CLRARDLTLQLLTFSKGGAPVRRLASVEQIVRESASFVVRGSGTFCNFHVANGLWQAEID 434 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFPEKF 164 + ++++ NL + A ++P GG +TI+ + + ++ G PE Sbjct: 435 EGQISQVIHNLVINAVQAMPHGGVITITCSNVAAVTEGEADLVRIDIEDQGEGI-TPEVL 493 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + S L Sbjct: 494 PRIFDPYFTTKRQGSGLGLASSYSIIRNHGGYIEVNSPPGKGAIFSIFLP 543 >gi|65320510|ref|ZP_00393469.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] Length = 448 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + + + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|332185226|ref|ZP_08386975.1| his Kinase A domain protein [Sphingomonas sp. S17] gi|332014950|gb|EGI57006.1| his Kinase A domain protein [Sphingomonas sp. S17] Length = 413 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 22/226 (9%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65 + + + H++ +P+ +I +E L D+ I ++++ + ++ Sbjct: 170 AERMRVDFVANASHELRTPLASILGFIETLGDEAGDDPEIRARFLKVMFDEARRMQRLVE 229 Query: 66 FM--------RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + S+D + D E+ ++ + + + ++ +RA Sbjct: 230 DLISLSRIEADKYRQPAQSMDLADLVNDVWEEFLDSGSPRAEDIACDLAEDLPPIAGDRA 289 Query: 117 KILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD- 169 ++ L A + +S+ S+ G + Sbjct: 290 QLSQMLHNLIGNAMKYGRVETPIRVSLNRDGEMLRLSVADRGEGIAAGHIPRLTERFYRV 349 Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + V + ++ RL ++ L Sbjct: 350 DSGRSRSIGGTGLGLAIVKHIVERHRGRLEITSEVGMGTTVTVRLP 395 >gi|323483424|ref|ZP_08088812.1| sensor protein [Clostridium symbiosum WAL-14163] gi|323691076|ref|ZP_08105358.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323403278|gb|EGA95588.1| sensor protein [Clostridium symbiosum WAL-14163] gi|323504862|gb|EGB20642.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 495 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + ++ L L S I HD+ +PI AI +E + + ++ + + Sbjct: 250 LKESSEEKLQYDKESKELISNISHDLKTPITAIKGYVEGIQDGVASSPEKLDKYIKTIYN 309 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + T + + I + V Sbjct: 310 KANDMDRLIDELTFYSKIDTNKIPYNYTKINVAEYFGDCLEDVGLDMETRGIELGYFNYV 369 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + + +++ N+ + L + + I ++D + ++ NG Sbjct: 370 DNDVMIIADAEQMKRVINNIIGNSLKYLDKKKGIINIRIKDDGDFIQIVIEDNGKGIAAK 429 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ R+ + + +L K Sbjct: 430 DLPFIFDRFYRTDSSRNSSKGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEVHFVLRK 488 >gi|315283630|ref|ZP_07871770.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120] gi|313612735|gb|EFR86737.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120] Length = 591 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65 ++ + + + H++ +P+ A+ E L + + DE++ + S + + Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------------SR 113 + L+ V I + D++ VIE + + Sbjct: 423 ILALSRIEQNPVPENIEIVDMDDVIEQSARTIFEMATEKNIQVTIPEKTSTPVTIETDRD 482 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +IL+NL A P GKV + + D + E I + NG + ++ + Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIDHEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L R+ E ++ L K Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLSK 589 >gi|312963064|ref|ZP_07777549.1| sensory box histidine kinase [Pseudomonas fluorescens WH6] gi|311282575|gb|EFQ61171.1| sensory box histidine kinase [Pseudomonas fluorescens WH6] Length = 982 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGEIIEISGQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V Sbjct: 803 RVSRIVQSLMSFAHAGAHQNLDEAVCLAEVAQDAIGLLALNRRNFEVQFFNLCDPDHWVD 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P GG V + + ++ ++ G+ ++ + Sbjct: 863 GDSQRLAQVLINLLSNARDATPAGGAVRVKTEGFEHTVDLIVEDEGSGIPQN-IMDRLFE 921 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADTESQRGTRIRVTLPR 973 >gi|228911297|ref|ZP_04075101.1| hypothetical protein bthur0013_54350 [Bacillus thuringiensis IBL 200] gi|228848315|gb|EEM93165.1| hypothetical protein bthur0013_54350 [Bacillus thuringiensis IBL 200] Length = 672 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|229051127|ref|ZP_04194671.1| hypothetical protein bcere0027_50780 [Bacillus cereus AH676] gi|228722190|gb|EEL73591.1| hypothetical protein bcere0027_50780 [Bacillus cereus AH676] Length = 672 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|229130704|ref|ZP_04259657.1| hypothetical protein bcere0015_51350 [Bacillus cereus BDRD-Cer4] gi|228652721|gb|EEL08606.1| hypothetical protein bcere0015_51350 [Bacillus cereus BDRD-Cer4] Length = 672 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|229153616|ref|ZP_04281793.1| hypothetical protein bcere0011_51450 [Bacillus cereus m1550] gi|228629845|gb|EEK86497.1| hypothetical protein bcere0011_51450 [Bacillus cereus m1550] Length = 672 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|218234843|ref|YP_002370233.1| sensor histidine kinase [Bacillus cereus B4264] gi|218162800|gb|ACK62792.1| sensor histidine kinase [Bacillus cereus B4264] Length = 672 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|30023484|ref|NP_835115.1| sporulation kinase [Bacillus cereus ATCC 14579] gi|29899045|gb|AAP12316.1| Sporulation kinase [Bacillus cereus ATCC 14579] Length = 348 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 122 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 181 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 182 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 241 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 242 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 300 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 301 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 337 >gi|330836603|ref|YP_004411244.1| histidine kinase [Spirochaeta coccoides DSM 17374] gi|329748506|gb|AEC01862.1| histidine kinase [Spirochaeta coccoides DSM 17374] Length = 418 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLI 53 +N S L + + + + H+I +P+ ++ L+LL + + + I Sbjct: 150 KRNDTRLRRSESLAQMTTMAASVAHEIKNPLASMGIHLQLLSKAFERKGELTEDEAERYI 209 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT 105 + + + +D + + D V+ + +++ Sbjct: 210 HVLEEEIDRLNRIVVDFLFAVRPMDVHLRIQDLNRLISDLTSFVMPELDEQHVALRLELQ 269 Query: 106 GEKIDLSRE---RAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 LS + ++LLNL A ++ G +T+S + N + G P Sbjct: 270 DYLPRLSLDENLMKQVLLNLIKNAMNAMEPQGGILTVSTKLVGNVVHLKVSDTGTGI-KP 328 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I + + + V + E+ + + + Sbjct: 329 EHLSKIFEPYFTTKSSGTGLGLTVVFKIIKEHGGDISVSSEPGRGTTFTMIFP 381 >gi|330504806|ref|YP_004381675.1| two-component sensor kinase CbrA [Pseudomonas mendocina NK-01] gi|328919092|gb|AEB59923.1| two-component sensor kinase CbrA [Pseudomonas mendocina NK-01] Length = 984 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREERENDGELTEISGQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F D + + + + Sbjct: 805 RVSRIVQSLMSFAHSGSHQRSDEPVCLADVAQDAIGLLSLNKRNFDIQFYNLCDPQHWAC 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P GG + + + S++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLIVEDEGSGI-PRAIIDRLFE 923 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPERQLGTRIRVTLPR 975 >gi|147668883|ref|YP_001213701.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] gi|146269831|gb|ABQ16823.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] Length = 581 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51 + +++ + + I H++ +PI ++ E L E D + Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHL 405 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106 + + + G + ++ + V Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPE 465 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++L+NL A P+GGK+ I V+ + + +G + Sbjct: 466 TLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRTQSQTLVVYVTDSGIGIPEDDL 525 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + E + S L Sbjct: 526 TRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLP 579 >gi|328467898|gb|EGF38938.1| two-component sensor histidine kinase [Listeria monocytogenes 1816] gi|332310706|gb|EGJ23801.1| hypothetical protein LMOSA_11920 [Listeria monocytogenes str. Scott A] Length = 594 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 367 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 426 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 427 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 486 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 487 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 546 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 547 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 584 >gi|313611039|gb|EFR85926.1| sensor protein kinase WalK [Listeria monocytogenes FSL F2-208] Length = 440 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 213 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 272 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 273 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 332 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 333 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 392 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 393 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 430 >gi|290892560|ref|ZP_06555553.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071] gi|290557869|gb|EFD91390.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071] Length = 610 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600 >gi|217965615|ref|YP_002351293.1| sensor protein YycG [Listeria monocytogenes HCC23] gi|217334885|gb|ACK40679.1| sensor protein YycG [Listeria monocytogenes HCC23] gi|307569836|emb|CAR83015.1| sensory box histidine kinase [Listeria monocytogenes L99] Length = 610 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600 >gi|118478526|ref|YP_895677.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196042701|ref|ZP_03109940.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225865179|ref|YP_002750557.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|229185457|ref|ZP_04312639.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1] gi|118417751|gb|ABK86170.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196026185|gb|EDX64853.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225790052|gb|ACO30269.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|228598045|gb|EEK55683.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1] Length = 458 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 70/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ + I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELEFSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|150389322|ref|YP_001319371.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149949184|gb|ABR47712.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 518 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 51/224 (22%), Gaps = 19/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK 65 + S + H+I SP+ +I +LL + +I S Sbjct: 292 QMEKMRQEFISNVSHEIQSPLASIQGFAQLLQNDELSPEERKHYLSIIETESKRLSKLSD 351 Query: 66 FM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + +D + + + Sbjct: 352 SLLKLAILESDSMRFEPKAYRLDKQLRNLILACEPQWREKRINMEAFLDEVTITADEDMM 411 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172 +++ +NL + P GG V + + + + G + F + + Sbjct: 412 SQVWINLIYNSIKFTPEGGSVRVDLNQHGKTIVCKISDTGIGIPEEDQKHIFERFYKADK 471 Query: 173 ESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 472 SRERSKKGGGLGLSITKKIIDMHYGDISVQSKSGTGTTFTVSLP 515 >gi|46906529|ref|YP_012918.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47091425|ref|ZP_00229222.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858] gi|226222924|ref|YP_002757031.1| two-component sensor histidine kinase [Listeria monocytogenes Clip81459] gi|254825659|ref|ZP_05230660.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194] gi|254853438|ref|ZP_05242786.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503] gi|254932516|ref|ZP_05265875.1| sensory box histidine kinase [Listeria monocytogenes HPB2262] gi|255520928|ref|ZP_05388165.1| two-component sensor histidine kinase [Listeria monocytogenes FSL J1-175] gi|300764579|ref|ZP_07074571.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017] gi|46879794|gb|AAT03095.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47020102|gb|EAL10838.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858] gi|225875386|emb|CAS04083.1| Putative two-component sensor histidine kinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606808|gb|EEW19416.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503] gi|293584071|gb|EFF96103.1| sensory box histidine kinase [Listeria monocytogenes HPB2262] gi|293594904|gb|EFG02665.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194] gi|300514686|gb|EFK41741.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017] gi|328476128|gb|EGF46837.1| two-component sensor histidine kinase [Listeria monocytogenes 220] Length = 610 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600 >gi|229076179|ref|ZP_04209147.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18] gi|229099150|ref|ZP_04230084.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29] gi|229105298|ref|ZP_04235947.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28] gi|228678224|gb|EEL32452.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28] gi|228684378|gb|EEL38322.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29] gi|228707042|gb|EEL59247.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18] Length = 484 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 70/238 (29%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + + ++ +S G ++ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSEEGIEVYLQLHP 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N+ I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKIAVTVSSDNDKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESEPREGTSIFFSLEK 478 >gi|229118160|ref|ZP_04247519.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3] gi|228665383|gb|EEL20866.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3] Length = 485 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 70/238 (29%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 242 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 301 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + + ++ +S G ++ Sbjct: 302 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSEEGIEVYLQLHP 361 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N+ I + NG+ Sbjct: 362 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKIAVTVSSDNDKVIVKVMDNGSGIESDT 421 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 422 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESEPREGTSIFFSLEK 479 >gi|229133944|ref|ZP_04262766.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196] gi|228649504|gb|EEL05517.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196] Length = 801 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL + + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTGNENDQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 +G + + + + ++++ +T + + Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDIGVLMDQVLTLLQPQAMMNNIQIRIDFTPDISLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + + ++ I G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPRGGEILIQIDKLDNDQIIIRFIDQGCGI-SKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ E + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHHGKVFIESEINKGTTVEVTLP 795 >gi|229156832|ref|ZP_04284919.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342] gi|228626752|gb|EEK83492.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342] Length = 448 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ DK + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWRDKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] Length = 817 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 51/228 (22%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI ++ E +E + + + Sbjct: 430 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESENTEERKEYYNIVEANNE 487 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L+ + + + D + Sbjct: 488 RLLQLINEILDLSKIEAGIVEFSIAAVRLHPLCKEIHDAHVFRCPSDVELRFDPSDEDIL 547 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A +G ++ + F + G + Sbjct: 548 IDSDKNRIFQVISNLIGNAFKFTTKGSISYGYHREGETIV-FHVTDTGTGIAPEKIGKVF 606 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + L Sbjct: 607 ERFVKANNFAQGTGLGLAICKTIIERLGGKISVTSELEKGTTFIFTLP 654 >gi|326629557|gb|EGE35900.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 552 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 327 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 386 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 387 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 446 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 447 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 505 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 506 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 545 >gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1] Length = 403 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI +L+ +++ ++I +S + Sbjct: 181 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITFATSTEEKNQYAEIIERNSEMLLNLFND 240 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ D + L V Sbjct: 241 ILDLSSLEADSLKFNIRPIKLTDICLQLKQQFCHKTQNGVKLILDDVDADMYASGDWNRI 300 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +I+ NL A P+G + ++ ++ F +K +G T Sbjct: 301 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKVND 359 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L + R+ + L Sbjct: 360 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 399 >gi|228963748|ref|ZP_04124889.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795893|gb|EEM43360.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar sotto str. T04001] Length = 464 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 296 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 297 QIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 356 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ D +++ G + + Sbjct: 357 NILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRS 416 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 417 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 455 >gi|113868561|ref|YP_727050.1| osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16] gi|113527337|emb|CAJ93682.1| Osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16] Length = 949 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 60/238 (25%), Gaps = 24/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQL 52 A+ + S L + L + + HD+ +P+ ++ E L + Sbjct: 697 AQQALLAMESERLRSSLLAAVSHDLRTPLTSLIGMAETLQRGTTPLAPEVAETVGAMRDQ 756 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTG 106 R L RL ++ +S Sbjct: 757 ARRMHAMVANLLDMARLQSRSVALRKEWQSFEELAGAALASLRDALARHRVVVADLSALP 816 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++L NL A G ++ + + S + ++ +G + Sbjct: 817 LVECDGVLMERVLCNLLENAAKYTAPGTEIRVRGELSDDAVHLVVEDDGPGVPAAMARQV 876 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII------DDHNVVLSALLEK 215 F + G ES + + + + E + + L + Sbjct: 877 FEKFTRGERESATTGVGLGLAVCEAIVQAHGGSIRVEPVHARAQGEGTGARFVVTLPR 934 >gi|228915828|ref|ZP_04079404.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843809|gb|EEM88882.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 448 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + + + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|229122768|ref|ZP_04251977.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201] gi|228660632|gb|EEL16263.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201] Length = 448 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + + + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|196031953|ref|ZP_03099367.1| sensor histidine kinase [Bacillus cereus W] gi|195994704|gb|EDX58658.1| sensor histidine kinase [Bacillus cereus W] Length = 458 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + + + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|146338768|ref|YP_001203816.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146191574|emb|CAL75579.1| putative sensor histidine kinase with a PAS domain [Bradyrhizobium sp. ORS278] Length = 454 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 30/259 (11%), Positives = 71/259 (27%), Gaps = 46/259 (17%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPI--------------GAIHNSLELLDEVG 44 + + + + +L L + + H++ +PI A+ LE + E Sbjct: 195 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFVYGNVHTLMRYRTALVGYLEAVHEQP 254 Query: 45 IEDE-----------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 + DE ++ S + G V+ Sbjct: 255 VSDEVAALRKELRIDAIVEDFGPLIEGTLEGAVRISEIVKNLRRLSFSKLGEVQRVNIER 314 Query: 82 GLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-- 137 + VD +++V + ++++NL A ++ + Sbjct: 315 LINTAVLWAGRTKQHRVDIQIEVEPDLWISGNEGQLHQVIVNLVENAIDAMRITEQPRLV 374 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195 ++ NE F + NG +I + + + + + + E+ Sbjct: 375 VAASRQGNEIAFRVTDNGPGIDKDHLS-RIFEPFFTTKRVGEGTGLGLWISYGIVREHGG 433 Query: 196 RLLPEIIDDHNVVLSALLE 214 L + S L Sbjct: 434 ELAASNESEGGATFSFTLP 452 >gi|45440820|ref|NP_992359.1| Signal transduction histidine kinase [Yersinia pestis biovar Microtus str. 91001] gi|229894056|ref|ZP_04509242.1| Sensor protein of zinc sigma-54-dependenttwo-component system [Yersinia pestis Pestoides A] gi|229903423|ref|ZP_04518536.1| Sensor protein of zinc sigma-54-dependenttwo-component system [Yersinia pestis Nepal516] gi|45435678|gb|AAS61236.1| Signal transduction histidine kinase [Yersinia pestis biovar Microtus str. 91001] gi|229679193|gb|EEO75296.1| Sensor protein of zinc sigma-54-dependenttwo-component system [Yersinia pestis Nepal516] gi|229703941|gb|EEO90954.1| Sensor protein of zinc sigma-54-dependenttwo-component system [Yersinia pestis Pestoides A] gi|320014313|gb|ADV97884.1| Sensor protein of zinc sigma-54-dependenttwo-component system [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 607 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47 M + LVA+ L + + H+I +P+ +I + + E + Sbjct: 355 MREVRQLQEEIRRKEKLVAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 414 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 +++ + + + L +R + V+ + +I + + Sbjct: 415 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 474 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162 + LLNL++ A ++ R G + I++ +++ S+ G R + Sbjct: 475 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 534 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + E++ R+ + Sbjct: 535 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 585 >gi|42782325|ref|NP_979572.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42738250|gb|AAS42180.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 458 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E+ + Sbjct: 345 VIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|296124082|ref|YP_003631860.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296016422|gb|ADG69661.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 483 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 72/227 (31%), Gaps = 15/227 (6%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55 + ++ + A LL + I H++ +P+ AI + ++LL+ I+ + L+ Sbjct: 232 LQESQAMLVQHEKQAAFGLLAAGIAHEVGNPLAAISSLVQLLNRRDIDAHTREKLHLVDD 291 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGE 107 L+ + +V++ + ++ Sbjct: 292 QLRRIQRTLRELVDFSRPATNVETNCDIHEVLGAALSIAKYYKRKKGKRIVTAFAENIPR 351 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++ LNL + A + GG++ IS + ++ +G+ + +I Sbjct: 352 VRAVRDQLVQVFLNLILNALDATEEGGQIHISTSIADGWLRIDIRDDGHGIEPAARS-RI 410 Query: 168 VDGNVESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLSALL 213 + + + + + R+ + L Sbjct: 411 FQPYFTTKSTGTGLGLFVCRNIIEQQLYGRIELTASSSSGSTFTVFL 457 >gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 391 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + L + L AL + + + H+I +P+ AI ++L + + +L+ Sbjct: 159 LELAHNEILQAEKLAALGHVSAGMAHEIRNPLNAIGLFAQILKPVLAHDAEKAGYIDKLL 218 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 I K + + G +++ + + I++++E F A VS + Sbjct: 219 HEVDRIDGILSKLLDASKGPQVTLEPVCLVETIDRILETFSAQLNASGVSVDKHYEQVPP 278 Query: 114 ERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +I NLF + + GG + + V+ + G E ++ Sbjct: 279 PMMADKGEVEQIFTNLFANSLYEMQHGGALKVGVRYDGYNVTIEVSDTGGGI-PRENLSK 337 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + V+ + K + + + + Sbjct: 338 IFDPFFTTKTKGTGFGLSVVLRIVKSYKGHINVRSTEGEGTIFNLEFP 385 >gi|315301282|ref|ZP_07872500.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596] gi|313630342|gb|EFR98257.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596] Length = 610 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 68/218 (31%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + + T + ++L N Sbjct: 443 MDGGRERLEKSFVNFTDFFNHIIDRFEMMKNETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ +NE S+ G + T + Sbjct: 503 IISNANKYSPDGGRISFYLKKYENEIEVSIADEGLGVPEEDLATIFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600 >gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 396 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI +L+ +++ ++I +S + Sbjct: 174 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITFATSTEEKNQYAEIIERNSEMLLNLFND 233 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ D + L V Sbjct: 234 ILDLSSLEADSLKFNIRPIKLTDICLQLKQQFCHKTQNGVKLILDDVDADMYASGDWNRI 293 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +I+ NL A P+G + ++ ++ F +K +G T Sbjct: 294 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKVND 352 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L + R+ + L Sbjct: 353 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 392 >gi|229011911|ref|ZP_04169091.1| hypothetical protein bmyco0001_23570 [Bacillus mycoides DSM 2048] gi|228749325|gb|EEL99170.1| hypothetical protein bmyco0001_23570 [Bacillus mycoides DSM 2048] Length = 439 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 208 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 267 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112 R ++ + I ++ + + ++ I + Sbjct: 268 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNNINITKEFSEGTIIGNT 327 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 328 QHFHQCFLNLIKNSIEAMPCGGDLIISASVSNNKVIIRIQDSGIGM-SQEQINRFGEPYF 386 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L I + L+ K Sbjct: 387 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 429 >gi|154495975|ref|ZP_02034671.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC 29799] gi|150274858|gb|EDN01914.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC 29799] Length = 580 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 53/226 (23%), Gaps = 20/226 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + + + + H++ +P+ +I ++L + +I + I + Sbjct: 350 RAEGIRSEFTANVSHELKTPLTSIKGFTDMLSSGMVKSEEDRKRFLTMIGVEVDRLIELI 409 Query: 65 KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRE 114 + + S + + V+ Sbjct: 410 NDILRISELESVAIDQCEEASDVLTAARETQTLLEPAAKEAGVTLNVTGQNAMAAIPVSR 469 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++LLNL +GG V ++V + G + Sbjct: 470 LKELLLNLMENGVKYNVKGGSVNVNVSADSAWVTTVVSDTGIGIPEDARKRVFERFFRVD 529 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + E + L + Sbjct: 530 KGRARKNGGTGLGLAIVKHIIQLYGGTVTLESTLGQGSTFTVKLPR 575 >gi|114778460|ref|ZP_01453305.1| multi-sensor signal transduction histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551304|gb|EAU53862.1| multi-sensor signal transduction histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 721 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 65/243 (26%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQL 52 + + + M++V L S + HD + +G I E+L E ED +M Sbjct: 470 LLEEQVRHAQKMEVVGQLASGVAHDFNTLLGVILGYSEMLRETLPEDSVNRANIEAIMNA 529 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + I + F RL ++ L D +++ + ++ + Sbjct: 530 GGRAKALVIQLMDFSRLGTTEQETISLASLLQDSISLLKPSLPEWISIRQDIQENTGMIE 589 Query: 113 RERAKILLNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLKIN 154 +I + + + + + + S+ N Sbjct: 590 ANAMQIGQVIMNLCMNAADAIGDTAGELRISLMETEVDDSMASAHMVEPGTYLQLSIADN 649 Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ + + + + V + + + E Sbjct: 650 GSGM-DEATMQHLFEPFFTTKDIGSGTGLGLAVVHGIIKSHGGFVTVESEPGTGSSFHVY 708 Query: 213 LEK 215 L K Sbjct: 709 LPK 711 >gi|89896860|ref|YP_520347.1| hypothetical protein DSY4114 [Desulfitobacterium hafniense Y51] gi|89336308|dbj|BAE85903.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 638 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 72/221 (32%), Gaps = 13/221 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + L +DL+ + + I H+I +P+ + L+ + + + ++ +L Sbjct: 411 LEKEMA-RLERLDLIGQMAAGIGHEIRNPMTTVRGYLQYISKKDKYADEVETFQLMIEEL 469 Query: 61 II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + F + L I V + + + Sbjct: 470 DRANEIITEYLSLSQDRVVDFKRINLNTIIQHLYPILSVHTKMEDKSIELNLGSLPDLYL 529 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +E +++LNL ++P G++TIS + I ++ G E ++ Sbjct: 530 DKKELCQLILNLVRNGLEAMPVKGRLTISTYRQQGNVILEVEDQGRGI-PNEIKDKVGTP 588 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + ++ + +A + + + + Sbjct: 589 FFTTKLNGTGLGMAICYSIAERHNALIDFQSGP-QGTKVRV 628 >gi|297579033|ref|ZP_06940961.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297536627|gb|EFH75460.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 572 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 388 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 65/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 +A+ N ++ + + H+I +P+ AI ELL + + +++++ ++ Sbjct: 144 LAREKAENADRSK--SVFLANMSHEIRTPLNAIVGFSELLASASTDEEKTQFLEIVQSNN 201 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + F + L ++ + ++ + Sbjct: 202 EMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMSDLEQQFRMRVAELGSGVQIVREASE 261 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ + +R +++ N A G + F +K G + Sbjct: 262 KEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPY-EEGLYFYVKDTGTGIPQEKL 320 Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + L Sbjct: 321 PHVFERFVKLKQEKNGTGLGLSICQTIVRKLGGEIGVESEEGAGSTFWFTLP 372 >gi|304316234|ref|YP_003851379.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777736|gb|ADL68295.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 460 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 69/221 (31%), Gaps = 12/221 (5%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60 + L AL + + I H+I +P+G I + + + + E +++I A Sbjct: 239 EKIMRRADRLSALGEMSAGIAHEIRNPLGIIKTIAQTILSESKQDDKEGLEIIIGEVDRA 298 Query: 61 II----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 L F + S + L + +I + + +++ + Sbjct: 299 DNVIKGLLNFAKPESINKVSKNINNVLEETINIINKYSIKSNVQIIFDRLPDVEVLVDDT 358 Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + +N+ + + ++ GG + + + G +K ++ + Sbjct: 359 LIKQAFINIMINSIQAMSAGGILHLYGNKDSEFLNIYFEDTGIGI-EDDKIDKVFNPFFT 417 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+ + I + L Sbjct: 418 TKNEGTGLGLSITHRIIEEHGGYISLSSIVGVGTNVLVRLP 458 >gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 895 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 59/230 (25%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ +S L + + + H+I +P+ AI ++ E +E + + + Sbjct: 498 LMESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESENPEERKEYYEIVDANN 557 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-- 107 + G V +I ++ E Sbjct: 558 ERLLQLINEILDLSKIESGIVEFTYGPVKLHTLCKEIHDAHVFRCPQGVELKFDSPDEAL 617 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL A +G Q+++ F +K G PEK + Sbjct: 618 SIHSDKNRIFQVFSNLIGNAFKFTTQGSVSYGYRQEAEKVV-FYVKDTGLGI-EPEKLGR 675 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 676 VFQRFAKLNNFAQGTGLGLSICKTIIERLGGEISVSSEVGTGTTFTFWLP 725 >gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] Length = 970 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 50/245 (20%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + L + A + + H+I +P+ + LL + ++D + Sbjct: 466 RERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSDTPLDDRQRHYV 525 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------- 100 L + ++ I L I + + Sbjct: 526 GTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSDILEPKAAEKGLAIT 585 Query: 101 ---QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKIN 154 V + ++L NL A G +S+ Sbjct: 586 YSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDEGWISIEATVVKGPDGPRLRYSVSDT 645 Query: 155 GNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + +V + V + L Sbjct: 646 GIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFGGELGVVSETGKGSTF 705 Query: 210 SALLE 214 + Sbjct: 706 WFEIP 710 >gi|302875104|ref|YP_003843737.1| integral membrane sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307690271|ref|ZP_07632717.1| integral membrane sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302577961|gb|ADL51973.1| integral membrane sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 348 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 21/236 (8%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +AKN + + L + H+ +PI +I +E++ + + + Sbjct: 110 LAKNFNLMAKELKNIEYLQKDFIVNVSHEFKTPIASIQGFVEIIKDKSLPETKFDEYTDI 169 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------- 106 + RL + +DS + + D + + Sbjct: 170 IIEETKRLSNLSTNILRLSRLDSQMISKNRVIFSLDEQLRKTLLLLEDQWSLKNLELEIN 229 Query: 107 ----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 I +I +N+ A G +++ ++D+ + I + G Sbjct: 230 LEKVNYIGDEELIQQIWVNILGNAIKFSYDNGTISVKLKDNPSSVIVEIADQGIGISEEI 289 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ + + + + V + + + + L K Sbjct: 290 ENHVFEKFYQGDTSHSKEGNGLGLAIVKRIIEICNGTIYFKTKYGKGTTFTVTLPK 345 >gi|229085493|ref|ZP_04217731.1| hypothetical protein bcere0022_21060 [Bacillus cereus Rock3-44] gi|228697798|gb|EEL50545.1| hypothetical protein bcere0022_21060 [Bacillus cereus Rock3-44] Length = 418 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 88/224 (39%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56 M ++ + M++V+ L + I H++ +P+ + +LL + E + Sbjct: 190 MMRSKLVKMEKMEVVSQLAASISHEVRNPLTVVKGFTQLLKTPDLSQESRERYIEHILGE 249 Query: 57 -SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KID 110 + + II ++ A + VD++ ++++VI + + + T E I Sbjct: 250 LNRAQIIIDDYLTFAKPASPKVDNIAIDQELKRVISMMMPLCNMNSIHITEELVTGSIIG 309 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LNL + ++P GGK+++ +N+ I +K +G PE+ + + Sbjct: 310 NTQHFQQCFLNLIKNSIEAMPNGGKLSVKSSVFENKIIIVIKDSGIGM-TPEQINRFGEP 368 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + I + L+ Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMNGTLNIKSIVNRGTTLTITFP 412 >gi|229167486|ref|ZP_04295224.1| hypothetical protein bcere0007_24490 [Bacillus cereus AH621] gi|228616048|gb|EEK73135.1| hypothetical protein bcere0007_24490 [Bacillus cereus AH621] Length = 364 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 133 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 192 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112 R ++ + I ++ + + ++ I + Sbjct: 193 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNNINITKEFSEGTIIGNT 252 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 253 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIIRIQDSGVGM-SQEQINRFGEPYF 311 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 312 STKTKGTGLGTMVAVKIIETMRGSLKIRSVVNKGTTLTITFPK 354 >gi|162455496|ref|YP_001617863.1| two component sensor kinase [Sorangium cellulosum 'So ce 56'] gi|161166078|emb|CAN97383.1| two component sensor kinase [Sorangium cellulosum 'So ce 56'] Length = 520 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 24/232 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60 + L + + H++ +P+ AI +L+ + + + + + + S Sbjct: 256 QQASAMDRERSAFL--AGLSHELRTPLNAILGFAHVLESEVDGPLSQDAREALSVIRQSG 313 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++L+ + + + RV Sbjct: 314 EHLRTLIDDILDLSALETGKLQLSRRAVNLRALVDQVMREASAAARDKPLQLRVTGDHAL 373 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 R +IL NL A RG VT+++ ++ G E Sbjct: 374 VAHADPRRVRQILTNLVSNAVKFTARGS-VTVNITGRGRYAAIVVQDTGPGIPPEETSAV 432 Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + L + + E + L Sbjct: 433 FEEYRQTGDVRSRRAGTGLGLSIARRLVLMHGGTIQLESELGRGSTFTITLP 484 >gi|47564388|ref|ZP_00235433.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|47558540|gb|EAL16863.1| sensor histidine kinase, putative [Bacillus cereus G9241] Length = 458 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ + S+ NG E + Sbjct: 345 IIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVMISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVQVELPK 458 >gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 1049 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI +L E E E + I + + Sbjct: 677 LRSARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILAETDEEQEKREYISIIENNN 736 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + F + + +I ++ Sbjct: 737 ALLLQLIGDILDLSKIEAGTLEFNFSDFELNELMHEKENIIRMKTAEGVELIFEPGLDAC 796 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++L+NL A +G + + F + G PE + Sbjct: 797 LFHSDRNRLSQLLINLLTNAAKFTAKGSIRFGYRAE-GSRLRFYVSDTGCGI-PPEGQRR 854 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D V S + + + + + L Sbjct: 855 IFDRFVKLNSFKQGTGLGLPICKSIVEHLGGEIGVKSEEGRGTTFWFTLP 904 >gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 701 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 56/234 (23%), Gaps = 32/234 (13%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68 + S + H++ +P+ +I ELL E + ++ A K + Sbjct: 459 KMKNEFVSVVSHELRTPLTSILGYTELLLAREFKPVERQEFVQTVYDQANQLSKMVDDLL 518 Query: 69 --------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 V + +I + + + ++ R+ + + ++ K+ Sbjct: 519 NLSRLDAGQIKLNRWVVSLHQIIREITKQLNETLSEKHRLLIDIPEGIPPIFADKDKVRQ 578 Query: 121 NLFM---VAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 L A P ++ I +++ G + Sbjct: 579 ILTNLLSNAIKYSPNGGQVALIVRELRKVPPGAPPLPNERSVIIAVRDQGMGISEEDLPK 638 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + L + R+ L Sbjct: 639 LFTRFFRVDNSTTRKIGGTGLGLSITKALIELHGGRIWATSTLGRGTTFWVTLP 692 >gi|328953481|ref|YP_004370815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453805|gb|AEB09634.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 492 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 67/230 (29%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RL 55 + L S L AL + I H+I +P+ ++ + + + + E Q Sbjct: 262 RQLEAQLLQSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFIMQGDVTPEFRQQCAEKIHR 321 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTG 106 A + ++ + + D + ++ + Sbjct: 322 GIQRASMIIENLLRFARPSMKTDLKKINLTYLLSETLSLVTNQARIQKIELRAQLPEYAI 381 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + +NL + A ++P GG + I+++ E ++K G+ + Sbjct: 382 IINGMEGLLQQAFMNLLLNAIRAVPDGGVIDITLKKIGAEAWIAIKDTGHGIEPSDLNN- 440 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + ++ + + L Sbjct: 441 IFDPFYTTAPVGQGSGLGLSICYSIIKQHFGAITVDSQKGEGSTFVVKLP 490 >gi|329116484|ref|ZP_08245201.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020] gi|326906889|gb|EGE53803.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020] Length = 453 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAI------- 61 L S + H++ +P+ ++ + LE LDE I++++ + Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGAIKEDIAPSFIKVSLDETNRMMRMITDLLNLSR 270 Query: 62 ------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 M + S+ + L + I R + + + Sbjct: 271 IDNQATRLTVEMTNFTAFMTSILNRFDLVKNQNTISGKSYEIIRDYPINSIWVEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + N+ I S+ G + F + + Sbjct: 331 TQVVENILNNAIKYSPDGGKITVKMKTTDNQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + + +L Sbjct: 391 ARSRAQGGTGLGLSIAKEIIKQHQGFIWAKSEYSKGSTFTIVLP 434 >gi|229180990|ref|ZP_04308325.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W] gi|228602547|gb|EEK60033.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W] Length = 484 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103 + + + L + + + ++ +S Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVRLQLHA 360 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 498 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + L + + H++ +P+ AI LL + + +Q Sbjct: 244 LKSEQAARAEAETANRLKDEFLATLSHELRTPLNAILGWAGLLRRKQLSPDKVQRALEVI 303 Query: 58 MSA--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSW 104 L R+ G + L I + A ++ Sbjct: 304 ERNAKSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQIINAAIDTLQPAADAKSIQIDSFL 363 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + ++ ++ A P G+V I ++ +N ++ G Sbjct: 364 EPSQTVIKGDSDRLQQIVWNLLSNAIKFTPTHGQVKIYLEWLENAVQIRVQDTGKGVSVD 423 Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + +G++ + + V L + + E D L Sbjct: 424 IAPYIFDRFRQAEGSITRSHGGLGLGLAIVRHLVELHGGTVWCESDGDGKGATFIVELP 482 >gi|153827167|ref|ZP_01979834.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|149738929|gb|EDM53251.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] Length = 572 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|323488993|ref|ZP_08094230.1| sensor histidine kinase; sporulation kinase [Planococcus donghaensis MPA1U2] gi|323397385|gb|EGA90194.1| sensor histidine kinase; sporulation kinase [Planococcus donghaensis MPA1U2] Length = 682 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 72/222 (32%), Gaps = 13/222 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVM 50 + +N LS+++L+ + + I H+I +P+ + L+LL + + E + Sbjct: 459 LYENELKRLSNLELIGQMAAGISHEIRNPMTTVRGFLQLLTDNKELEGYNSYFELMIEEL 518 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + ++ ++ + + Sbjct: 519 DRANSIISEFLSMGNTRSSDLKMQNLNAIITDIAPLLKIDTFSQNKFIEIETMDLPDLLL 578 Query: 111 LSRERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++L+N+ ++ G + ++ N + ++ G E +I Sbjct: 579 NRNEIRQLLINICRNGLEAMNPGEMLSIRTYIENDNTVVLEIEDEGMGM-SEEILKKIGT 637 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + +A ++ ++ + D + S Sbjct: 638 PFYTTKDNGTGLGLGVSYAIAARHRAKIDVQSSSD-GTIFSF 678 >gi|226314835|ref|YP_002774731.1| sporulation kinase [Brevibacillus brevis NBRC 100599] gi|226097785|dbj|BAH46227.1| sporulation kinase [Brevibacillus brevis NBRC 100599] Length = 622 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51 N + L + L + I H+I +P+ ++ ++ L I + Sbjct: 391 RHNEELLRKAEKLSVIGELAAGIAHEIRNPLTSLKGFIQFLYPSMNDNQQYADIMLSELD 450 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I ++ K + + L + + + + +D R ++ Sbjct: 451 RINFIVSELLVLAKPHSIQIKPLPLIPLLENVLTLLRSEANLKNIDFRTAFAYHPIIAGE 510 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDG 170 + ++ +N+ A ++ G+V I+ N + +L G E ++ Sbjct: 511 ENQLKQVFINIIKNAIEAIDGHGEVVIATTLKDNHQVLITLTDTGCGI-SEEMIHKLGAP 569 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ L + + ++ L Sbjct: 570 FFTTKENGTGLGLMISSKIMKDHNGSLEIKSREHEGTMVEITLP 613 >gi|73748089|ref|YP_307328.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73659805|emb|CAI82412.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 581 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51 + +++ + + I H++ +PI ++ E L E D + Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHL 405 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106 + + + G + ++ + V Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPE 465 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++L+NL A P+GGK+ I V+ + + +G + Sbjct: 466 TLPRVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRTQSQTLVVYVTDSGIGIPEDDL 525 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + E + S L Sbjct: 526 TRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLP 579 >gi|259416294|ref|ZP_05740214.1| histidine kinase [Silicibacter sp. TrichCH4B] gi|259347733|gb|EEW59510.1| histidine kinase [Silicibacter sp. TrichCH4B] Length = 352 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 17/238 (7%), Positives = 52/238 (21%), Gaps = 27/238 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 +I + + + + H++ +P+ A+ +E L + D ++++ + Sbjct: 114 DITDREHASQMRRDFVANVSHELRTPLTALMGFIETLRGAARDDANARDRFLEIMEGEAS 173 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTG 106 + + Sbjct: 174 RMNRLVGDLLSLNRVESEERVRPKERIDLVAYLGSTIKSLGPIAESGGRNLALEAPDMPI 233 Query: 107 EKIDLSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 E + ++ NL A + + +G Sbjct: 234 EIPADPDQIQQVFTNLIENALKYGGENVTVSLTALDRDPALRCPAVRVQVIDDGPGIDPV 293 Query: 162 EKF---TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL E + +L Sbjct: 294 HLPRLTERFYRADNHRSRELGGTGLGLAIVKHIINRHRGRLRVESDLGKGATFTVILP 351 >gi|228928290|ref|ZP_04091331.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228831337|gb|EEM76933.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 448 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMNVEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|229081928|ref|ZP_04214420.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2] gi|228701516|gb|EEL54010.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2] Length = 484 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + + + L + + + ++ +S G Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVRLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKIIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|283798611|ref|ZP_06347764.1| sensor histidine kinase [Clostridium sp. M62/1] gi|291073595|gb|EFE10959.1| sensor histidine kinase [Clostridium sp. M62/1] gi|295090639|emb|CBK76746.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain. [Clostridium cf. saccharolyticum K10] gi|295115714|emb|CBL36561.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain. [butyrate-producing bacterium SM4/1] Length = 496 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++ + L S I HD+ +PI AI +E + + + ++ I Sbjct: 251 LKESAEEKVQYDKESKELISNISHDLKTPITAIKGYVEGIQDGVASSPEKLSKYIRTIYN 310 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQV 102 + + + + V Sbjct: 311 KANDMDRLIDELTFYSKIDTNRIPYTFSKINVAEYFWDCVEEVGLDMETRGIELGYFNYV 370 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + + +++ N+ + L + + I ++D + ++ NG Sbjct: 371 DEDVLIIADAEQMKRVINNIIGNSLKYLDKKKGIINIRIKDDGDFVQIVIEDNGKGIAAK 430 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ R+ + + +L K Sbjct: 431 DLPYIFDRFYRTDSSRNSSKGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEIHFVLRK 489 >gi|253700346|ref|YP_003021535.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775196|gb|ACT17777.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 664 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQL 52 + + M+ V L + HD + + I +L +++ Sbjct: 285 LMEEQLRQSQKMEAVGQLAGGVAHDFNNILTVIAGYANMLKMDLPALGNEVRLAEQIATA 344 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ L F R +D + +E + I D +++ + + + Sbjct: 345 TERAAELTKGLLAFSRKQPMAPQKLDLGEIVQRVETFLTRVIGEDIQLKTQLLPDSLPVC 404 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTI-------------SVQDSKNENIFSLKINGN 156 + +I L A ++ GG TI + + + + NG Sbjct: 405 ADMGQIEQVLINLAANARDAMENGGTFTIATGLFEADGSPSAFCGPAGSYAVIIVSDNGK 464 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + ++K + + V S L Sbjct: 465 GM-SSETCKRIFEPFFTTKEVGKGTGLGMAIVYGIVQQHKGYITVDSKPGGGTVFSIYLP 523 >gi|52142294|ref|YP_084535.1| sensor histidine kinase [Bacillus cereus E33L] gi|51975763|gb|AAU17313.1| sensor histidine kinase [Bacillus cereus E33L] Length = 458 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG + V++ ++ I S+ NG E + Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + + + + L K Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|229017296|ref|ZP_04174200.1| hypothetical protein bcere0030_18510 [Bacillus cereus AH1273] gi|229023472|ref|ZP_04179969.1| hypothetical protein bcere0029_18080 [Bacillus cereus AH1272] gi|228737825|gb|EEL88324.1| hypothetical protein bcere0029_18080 [Bacillus cereus AH1272] gi|228743997|gb|EEL94095.1| hypothetical protein bcere0030_18510 [Bacillus cereus AH1273] Length = 351 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + L S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKLRQEFVSNVSHEIQSPLTSIKGFARALQDSNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYVPERVTYRLDQQLKQVVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ K S++ G + Sbjct: 234 QITADQESMSQVWINLIHNSIKFTPSGGMITIQLKEHKEFLEVSIRDTGIGISEEQKQHV 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 294 FERFYKVDSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTKFIVRIP 346 >gi|167746380|ref|ZP_02418507.1| hypothetical protein ANACAC_01089 [Anaerostipes caccae DSM 14662] gi|167654373|gb|EDR98502.1| hypothetical protein ANACAC_01089 [Anaerostipes caccae DSM 14662] Length = 902 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54 K + A L I HD+ +P+ +I + +L E ++ + Sbjct: 661 QKEAELKAQREEFRANLLRSISHDLRTPLTSISGNAGVLRQSSDQISEEKKQELYTDIYD 720 Query: 55 LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + V+ +I Sbjct: 721 DAMWLINLVENLLSVTRIENGTMKIEKEPEIVEEVILEAVKHIDRRKNEHHIHIRIDDDM 780 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++++NL A +G + IS + + + + +G E T Sbjct: 781 MMADMDAKLMIQVIINLVDNAIKYTGKGSHIDISAEKKNGKVLIEVADDGEGI-SDEAKT 839 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + S + + + + V S L+ Sbjct: 840 RLFDMFYTGSKTVADSRRSMGMGLALCKSIVQAHGGTITVRDRKPRGTVFSFELQ 894 >gi|332976995|gb|EGK13806.1| sporulation kinase A [Desmospora sp. 8437] Length = 524 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 70/206 (33%), Gaps = 8/206 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + I H++ +P+ A+ L+LL+E D + + + +++ Sbjct: 25 GQIAAGIAHEVRNPLTAVKGFLQLLEEQANPDYIDIAKTELNDALATLDSLLQVAKPDPE 84 Query: 70 -AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + S+ + + + K+V K L NL A Sbjct: 85 GETRQSVSLSVELENVLSLFQNQSYSIDVKKVFNDTDATIYGQKNHIKKALFNLVKNAFE 144 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 S+ G +T+ ++N + S++ G + + + + + +V Sbjct: 145 SIEGEGTITLRHDSNENYVVVSIEDTGVGIPKDQLSL-LGTPFFSTKTEGTGMGMAWVYS 203 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + HE+ + E ++ + ++ Sbjct: 204 VIHEHGGYIQVESEENVGTTFTIVMP 229 >gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium TW-7] gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium TW-7] Length = 1107 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 56/242 (23%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L L+A + + H+I +P+ +I +LL + + +E + + Sbjct: 518 RKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPLNNEQQKHL 577 Query: 54 RLSSMSAIIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + +A L+ + V I + + + + Sbjct: 578 VTVNNAARSLLRLLNEVLDSAKLERGKLTIEAVHFSLKPVIDSIISTFWLEAKKKDLILH 637 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 ++ S +IL NL A G F ++ G Sbjct: 638 LTIKESVQNTYYGDPDRLRQILTNLIGNAIKFTEHGSVTITVSTTQNGHLFFEVQDTGIG 697 Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + L + + Sbjct: 698 IEKDRVSAIFQPFVQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSEVNKGTCFYFS 757 Query: 213 LE 214 L Sbjct: 758 LP 759 >gi|313890185|ref|ZP_07823820.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121546|gb|EFR44650.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 881 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 65/233 (27%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSM 58 + I + L A L I HD+ +P+ +I L+ E G E QL Sbjct: 639 QQKIELKMQKEQLRANLLRAISHDLRTPLTSISGQARLMMETGETLEKQQLTELATYIYD 698 Query: 59 SAIIRLK---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ + + + S + + + D + + + + Sbjct: 699 DSMWLINLIENLLSITKLDNDMTLSLSTNIFDEMVEEALKHVDRHLKHHNFILDLSDDLL 758 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L+N+ A P G ++T++ + + + +G K Sbjct: 759 MAKMDGPLIVQVLINIINNAVKYTPEGSRITLTSKRKDQNLVVEVSDDGPGISDQAKEKI 818 Query: 167 IVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V++ L Sbjct: 819 FDLFYTSENASADGKRGLGIGLSLCKSIITAHGGTIYVHDNIPKGVIIGFTLP 871 >gi|291562137|emb|CBL40953.1| Signal transduction histidine kinase [butyrate-producing bacterium SS3/4] Length = 495 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++ + L S I HD+ +PI AI E L E D+ ++ I Sbjct: 250 LKESTEEKIQYDKESKELISNISHDLKTPITAIKGYAEGLMEGVASSPEKRDKYIRTIYN 309 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQV 102 + + + + V Sbjct: 310 KANDMDRLINELTFYSKIDTNKIPYTFSKINVSNYFRDCVEEVGLELEARGIELGYFNFV 369 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFP 161 I + + +++ N+ + + + + D + ++ NG Sbjct: 370 DEDVMVIADAEQMKRVINNIIGNSLKYMDKKNGIINIRILDVGDFVQVEIEDNGKGIGQK 429 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E F + + I V + ++ ++ + +L K Sbjct: 430 ELPYIFDRFYRTDSSRNSSKGGSGIGLSIVKKIIEDHGGKIWATSKLGIGTEIHFVLRK 488 >gi|153807061|ref|ZP_01959729.1| hypothetical protein BACCAC_01338 [Bacteroides caccae ATCC 43185] gi|149130181|gb|EDM21391.1| hypothetical protein BACCAC_01338 [Bacteroides caccae ATCC 43185] Length = 1340 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 20/237 (8%), Positives = 65/237 (27%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K L+ L + + + H+ +P+ I + +++L + + + Sbjct: 802 EKQQIKQLNQEKL--VFFTNVSHEFRTPLTLIISHIDILLQKYSLNPSIYNQITKIRKNA 859 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 ++ + ++ G I+Q + + + Sbjct: 860 QQMNKLISELLEFRKLEQNYGTIQIKQQDIIVFLKEIYLSFVDYAQQRNINYEFKLPELS 919 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + K+ NL A G + +S + + ++ ++ G + Sbjct: 920 VLCWFEPQLMEKVFFNLLSNAFKYTSDKGNIILSGEITNSDIKINITDTGIGISEQDKDK 979 Query: 163 KFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + I + ++ + + + + L + Sbjct: 980 IFARFFQADNQEKKGSLFSGTGIGLALTRTIVEKHHGEITVKSVVGEGSTFTVRLPR 1036 >gi|222056308|ref|YP_002538670.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221565597|gb|ACM21569.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 821 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 67/233 (28%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 ++ + ++ + +L I HD + + I ++ L LDE ++ + Sbjct: 441 RDELLKMQKLESLGILAGGIAHDFNNVLTGIMGNISLSRMLLDESHRATTTLKSAEKACQ 500 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A + + V + G+I + ++ V + + Sbjct: 501 RASELAIQLLTFSKGSHPVKKTVSAGNIAKASASRVSDGFSVISVFNIPENLHPVEVDEG 560 Query: 114 ERAKILLNLFMVAHASLPRGGKV------------TISVQDSKNENIFSLKINGNLARFP 161 + + N+ + A ++P GG + + F+ G Sbjct: 561 QIGQAFSNIAINAAQAMPEGGTFTVRAENVALDKANSMSLPAGDYVRFTFSDTGCGIPEE 620 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D + + + ++ + + V LL Sbjct: 621 DLK-KVFDPYFTTRAGGSGLGLAAAHSIIGKHGGHIGVSSVVGKGTVFQVLLP 672 >gi|260062083|ref|YP_003195163.1| sensor histidine kinase [Robiginitalea biformata HTCC2501] gi|88783645|gb|EAR14816.1| sensor histidine kinase [Robiginitalea biformata HTCC2501] Length = 364 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 78/228 (34%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++++ + + I H++ +P+ I EL+ E + + ++ + +A Sbjct: 136 LIRRQVERTDRLNILGEITAGIAHELNTPLANILGFAELIQERATDPKTIEDLDRIIENA 195 Query: 61 II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKI 109 I + F S+ + ++ ++ + + Sbjct: 196 IFSREVVKKLMFFACEIPQKVESIHLNTAIEEVVSLLTPNFRSKQLTYSSTLPDRDIQLH 255 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L NL M A + P ++TI+V++ N + S+ G+ P ++ + Sbjct: 256 VDRIQITQVLFNLVMNAIYASPEKSRITIAVREKNNRVLISVSDEGSGI-DPAISEKVFE 314 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + + + + V + K Sbjct: 315 PFFTTKPLGEGSGLGLSVVHGIVSSHGGSITHKPNRPKGTVFTVDFPK 362 >gi|317470787|ref|ZP_07930170.1| osmosensitive K+ channel His kinase sensor domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901725|gb|EFV23656.1| osmosensitive K+ channel His kinase sensor domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 902 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54 K + A L I HD+ +P+ +I + +L E ++ + Sbjct: 661 QKEAELKAQREEFRANLLRSISHDLRTPLTSISGNAGVLRQSSDQISEEKKQELYTDIYD 720 Query: 55 LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + V+ +I Sbjct: 721 DAMWLINLVENLLSVTRIENGTMKIEKEPEIVEEVILEAVKHIDRRKNEHHIHIRIDDDM 780 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++++NL A +G + IS + + + + +G E T Sbjct: 781 MMADMDAKLMIQVIINLVDNAIKYTGKGSHIDISAEKKNGKVLIEVADDGEGI-SDEAKT 839 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + S + + + + V S L+ Sbjct: 840 RLFDMFYTGSKTVADSRRSMGMGLALCKSIVQAHGGTITVRDRKPRGTVFSFELQ 894 >gi|229103766|ref|ZP_04234446.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28] gi|228679642|gb|EEL33839.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28] Length = 448 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG V V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEE-MDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELPK 448 >gi|156740610|ref|YP_001430739.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus castenholzii DSM 13941] gi|156231938|gb|ABU56721.1| signal transduction histidine kinase, nitrogen specific, NtrB [Roseiflexus castenholzii DSM 13941] Length = 516 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 20/229 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + + L A+ L + I H++ +P+ AI L L E +QL Sbjct: 272 QTQLVRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCPPETPNQHFLQLAEEEID 331 Query: 59 SA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKID 110 R V+ + + + + + + Sbjct: 332 RIVRVLERLRDLYRPRADVFTHVNVNELIESVLLLTGKQLERSRIQVLRELAPDLPAIQG 391 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFT 165 ++ + ++LLNL + A ++P GG + + ++ G + Sbjct: 392 VADQLKQVLLNLVLNAAEAMPNGGTLHVQTYRYHPTEGKGAVAIAITDTGIGISPDQLT- 450 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I DG + + Y + + R+ + I +L Sbjct: 451 RIFDGLHTTKERGMGLGLYTSRAIIERHLGRISAQSIPGEGTTFEIVLP 499 >gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1042 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 69/232 (29%), Gaps = 30/232 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---------------LS 56 + + + + H++ +P+ +I +++L + ++ ++ Sbjct: 789 ERMKSEFVAMVSHELRTPLTSIKGYIDMLLDGDAGPLAVEHQELLQIVKSNADRLLLLIN 848 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------K 108 + + R++ +L + + A +R+ + + Sbjct: 849 DLLDMSRIEAGKLMLHRAPLDVRPLIRQVATALRPQLDAKHQRLNLDLSETPPDDAPPLM 908 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +IL N+ A P+GG++++ + +++ G PE+ +I Sbjct: 909 FGDAARVHQILTNVLSNAIKYTPQGGEISVRLSVEPPWMCIAVQDTGIGL-TPEEQERIF 967 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + L ++ R+ E Sbjct: 968 DRFYRVRNRATREASGTGLGLAITRSLVDLHQGRITVESEAGRGSTFRICFP 1019 >gi|78355157|ref|YP_386606.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217562|gb|ABB36911.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 592 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 62/222 (27%), Gaps = 21/222 (9%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMSAII 62 L A+ L + + H+I +P+ +I E ++ ++Q + + Sbjct: 363 KLAAIGSLAAGVAHEIRNPLSSIKGYATYFGTRFAEGSEDRDAARIMVQEVDRLNRVISD 422 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKIDLSRERAKI 118 + R + ++ ++I + + + + Sbjct: 423 LIGLARPSDLSLKPSRPESLAENVLRLIRQDAAGKNIDLRFAAADDLPQAVLDPDRVTQA 482 Query: 119 LLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 LLN+ + A ++ + + + F ++ G T D Sbjct: 483 LLNVCLNALDAMESGGVLTLSVDTDSTSSEGRRLLRFKVRDTGCGITPETLSTMF-DPYF 541 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + +S +L Sbjct: 542 TTKSQGTGLGLAIVHKIVEAHGGEIAVQSSVGSGTEISLILP 583 >gi|73748020|ref|YP_307259.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73659736|emb|CAI82343.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 501 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 62/225 (27%), Gaps = 21/225 (9%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRL 64 S + A L S + H++ +P+ +I + L + + ++ IR + + Sbjct: 265 SEKVKAELLSVVSHELRTPLTSIKGLTDSLLRKDVNWDDNTKKDFLESIRSETGKLSRLI 324 Query: 65 KFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + G++ +I I+ Sbjct: 325 DDLLDTTKLERNLLKLKRGKGTILQVIEAIKIDMECLTEKHQVIYDLQDGQSPLFIDKMR 384 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 +++LN+ + K+ IS + + ++ G + +S Sbjct: 385 IGQVILNIVGNSVKYSLPSSKIKISSKSLGGHLVVAISDEGRGISGKDIPYVFDYFYQDS 444 Query: 175 TID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E D ++S + Sbjct: 445 KSEKKRNSGMGLGLAICRGIIKAHGGDIWVENAADIGAIVSFTIP 489 >gi|313634988|gb|EFS01372.1| sensor protein kinase WalK [Listeria seeligeri FSL N1-067] Length = 610 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 Y-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 D + D +++ + KR + ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDXXXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ +NE S+ G + T + Sbjct: 503 IISNANKYSPDGGRISFYLKKYENEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600 >gi|261408736|ref|YP_003244977.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261285199|gb|ACX67170.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 456 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 57/229 (24%), Gaps = 22/229 (9%) Query: 8 NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSA 60 L ++V L + + H++ +P+ + L+LL E + + + + Sbjct: 217 RLEQSEMVRRNLVADVAHELRTPLTIVRGKLDLLQQNRQPIEPELLLPIQDELIRLTRLV 276 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLS 112 + V + + I + + + + + Sbjct: 277 GDLHQLSLAEAKQLPLVRKPTDMVVLLSQIRERVEPEAEAKNLSLQLTCATERTSVPVDP 336 Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ LNLF+ A P GG V +S + ++ G Sbjct: 337 SRITQVFLNLFVNAIRYTPHGGLVHVSLLEESPSGMLRIDIRDTGPGIEEEHLPYLFNRF 396 Query: 171 NVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + L Sbjct: 397 YRTDEARARHQGGMGLGLAIAKEFIVSHGGTIQAESKPGQGTTFTVRLP 445 >gi|115376838|ref|ZP_01464061.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115366141|gb|EAU65153.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 791 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 74/240 (30%), Gaps = 28/240 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 A+ + L S + ++ L + + H+I +P+ I ++L E L++ G+ D +R Sbjct: 411 ARRLEMQLQLSERMASVGTLAAGVAHEINNPLAYISSNLAFLSEQLEQEGLSDRQRAEMR 470 Query: 55 LSSMSA-----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F R G V+ + +++ + + ++ + Sbjct: 471 DAVQESLEGTRRVRLIVQDLKAFSRADDESQGPVEVHRVVQGSLRLVRNELEHRAQLTLE 530 Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGN 156 + A++L+NL + A + P + ++ NG Sbjct: 531 LNTVPLVLGNESRLAQVLVNLLVNALQAFPAERPAGDNRIRIVTRTAAERVHVQVEDNGQ 590 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + E L Sbjct: 591 GM-TPEVQRRIFDPFFTTKPVGVGTGLGLSICNTIVQGMGGSIEVESTPGVGSTFRLNLP 649 >gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 1200 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 65/241 (26%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ L + L + + + H+I +P+ AI ELL E ++ + + SA Sbjct: 633 LARTRDQALEASRLKSEFVANMSHEIRTPMNAIMGMNELLLETDLDAQQRDFAVIVRESA 692 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSW 104 L+ + ++ + + + E + D + + + + Sbjct: 693 EGLLRIINDILDFSKLEAGKMTIDETEFRLVDTVETIADMLSVGARKRGLALSTFIDPAI 752 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-----IFSLKINGNLAR 159 ++LLNL A +GG + D F + G Sbjct: 753 PAVLRGDEGRLRQVLLNLGGNAVKFTEQGGVTILITPDDPPGVSLLRLRFEVIDTGIGLS 812 Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + ++ + + + E + Sbjct: 813 PVAR-QRLFQPFTQADGSTTRKYGGTGLGLSISRRIIELMGGEIGVESEFGRGSTFWFTV 871 Query: 214 E 214 Sbjct: 872 P 872 >gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] Length = 580 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 24/228 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + + H++ +PI +I E L D+ E + +I S+ + Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAIDDKEALTEFLSIILKESVRLETLI 411 Query: 65 KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + I + + ++ V E + + + Sbjct: 412 QDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQLHVRVPKEPVYVMADP 471 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +I LNL A P GG VTIS + K F + G + E +I + Sbjct: 472 LRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIP-RIFERFY 530 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L ++ + + L+ Sbjct: 531 RIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLK 578 >gi|153801730|ref|ZP_01956316.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|124122754|gb|EAY41497.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] Length = 514 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 129 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 188 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 189 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 248 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 249 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 307 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 308 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 366 Query: 209 LSALLE 214 + + Sbjct: 367 FTLYIP 372 >gi|323132509|gb|ADX19939.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 554 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 329 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 388 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 389 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 448 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 449 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 507 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 508 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547 >gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 632 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 20/228 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + L + L + + H+I +P+ AI +LL D+ E +++I ++ Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + M F + + + ++ + S Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPDNVALIAPKDSPEC 506 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ N A G + ++ + +E FS+ G+ E Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCIILAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D + + + + R+ Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612 >gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] Length = 628 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 20/232 (8%), Positives = 57/232 (24%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + + + + + + + H+I +P+ AI LL + + DE L R + Sbjct: 393 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEKELTDEEKDLFRNTINK 452 Query: 60 AIIRLKFMRLA---------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + F + L + ++ + Sbjct: 453 NSNLLLKLINDILELSRIESGRMSFAFDDCSLNELLEEIYQTHHLLMPSNIRFLKEFQET 512 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ N A + + + + E ++ G + Sbjct: 513 ELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGAVYKKEEKEVHVFVEDTGKGMSEEAQ 572 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + R+ + + ++ Sbjct: 573 KKVFERFFKVDEFAQGTGLGLSICQTIAERLEGRITLSSQEGKGSRFTLIIP 624 >gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 632 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 20/228 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + L + L + + H+I +P+ AI +LL D+ E +++I ++ Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + M F + + + ++ + S Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPDNVALIAPKDSPEC 506 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ N A G + ++ + +E FS+ G+ E Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCIILAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D + + + + R+ Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612 >gi|94264019|ref|ZP_01287820.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455612|gb|EAT05797.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 555 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 74/231 (32%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRL 55 K + L A+ L + + H++ +P+ +I LL + + E +++I Sbjct: 324 KKKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAE 383 Query: 56 SSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWT 105 + + + + D + ++ + + +++ Sbjct: 384 QTRRSSTIIKALLSFARNSNHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I E ++++NL + ++ G++ + + + ++ NG PE + Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + L L Sbjct: 503 RIFDPFFSTKPVGEGTGLGLSICAGIIDDLGGSIEVAASREGGAALLVSLP 553 >gi|94267327|ref|ZP_01290846.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93452049|gb|EAT02741.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 555 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 74/231 (32%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRL 55 K + L A+ L + + H++ +P+ +I LL + + E +++I Sbjct: 324 KKKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAE 383 Query: 56 SSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWT 105 + + + + D + ++ + + +++ Sbjct: 384 QTRRSSTIIKALLSFARNSNHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I E ++++NL + ++ G++ + + + ++ NG PE + Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + L L Sbjct: 503 RIFDPFFSTKPVGEGTGLGLSICAGIIDDLGGSIEVAASREGGAALLVSLP 553 >gi|332705700|ref|ZP_08425776.1| putative ATPase [Lyngbya majuscula 3L] gi|332355492|gb|EGJ34956.1| putative ATPase [Lyngbya majuscula 3L] Length = 1754 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 63/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEV 49 + K I +L L + S H+ +P+ I E+ + ++ + Sbjct: 1494 LEKQIRKSLEREKELTELKSRFISMTSHEFRTPLTTIMGVTEIFKYYSQNWTDEKKQNYL 1553 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQV 102 ++ + + + G + ++ + D I + + Sbjct: 1554 DRIQVNVKHMLHMLDDVLVVNKANAGKLKFNPAPLNLLEFCRDLVEDIELGIDTQQSIVF 1613 Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 S E +++ + + L A P + + + E IF +K G Sbjct: 1614 SIQCECPEVNFDEKLLRHILINLLSNATKYSPNDSTINFDLICQQEEVIFKIKDQGIGIP 1673 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F N I + V + + + + Sbjct: 1674 EEDQKQLFESFHRCNNVGNIPGTGLGLAIVKQSVEVHGGEITVNSQVGIGTTFTVTIP 1731 >gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453] gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453] Length = 559 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 35/244 (14%) Query: 3 KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + I L A + + + H+I +P+ + ++LL + +++E + Sbjct: 149 EKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQEEQREYAT 208 Query: 55 LSSMSAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDK 98 + SA + F ++ G + L Q + + Sbjct: 209 IIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLQLSY 268 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKIN 154 ++ ++L+NL A V++ + F++K Sbjct: 269 YIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLTQVEEDRLTLEFTVKDT 328 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G EK ++ + + L + E ++ Sbjct: 329 GIGI-SSEKIDRLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMGGDITVESKENKGAT 387 Query: 209 LSAL 212 Sbjct: 388 FVFT 391 >gi|94969630|ref|YP_591678.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551680|gb|ABF41604.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 570 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 76/239 (31%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEV 49 + K L + + + + + H+I +P+ I +L+ D+ E+ Sbjct: 314 LKKAAERMLHVEKMATIGKMAAVVAHEINNPLSGILTYSKLVKRWIEKGIFDDEPKRHEM 373 Query: 50 ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQ 101 + L+ S +K + I + I + ++ Sbjct: 374 AENLDLVATESRRCGDLVKNLLSFSRTNPINLEWIAVNPIVDRVVKLAAHKLEMGGIQIH 433 Query: 102 VSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNL 157 V + + + ++LL L M A ++P GG + I+ + + E + +K +G Sbjct: 434 VDTASDMPVVHADAAQIEQVLLALTMNAIDAMPHGGNLWIATTITDHSELLLQVKDDGMG 493 Query: 158 ARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + + + R+ + + L Sbjct: 494 I-SSEILPRLFEPFLTTKDTGKGVGLGLAISHNIVERHNGRIEVDSQVGRGTTFNVYLP 551 >gi|148262352|ref|YP_001229058.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146395852|gb|ABQ24485.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 885 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 33/244 (13%) Query: 1 MAK-NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQ 51 M + N + S V L I HD + + I ++ E+ +++ Sbjct: 503 MEQLNQAQRMES---VGRLAGGIAHDFNNLLTPIIGFADIARREAPENSPTVEKMERILR 559 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---K 108 + L F R D + +++ I +++ T E Sbjct: 560 AAFRAKELVQQLLSFGRKQLLDMKITDLNTVVSSFAEILRRTIRESIDIRLRLTPELDGI 619 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153 +IL+NL + A ++ G + + + ++ Sbjct: 620 CADKTHIEQILMNLLVNAQDAIDGKGIISVETAPVVLDEEYARHHANVIPGHYVMLAVSD 679 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 +G E I + + + + V + ++ + V Sbjct: 680 SGCGM-DRETQDHIFEPFFTTKKAGEGTGLGLATVYGIVKQHGGNVWVYSEPGQGTVFKL 738 Query: 212 LLEK 215 + Sbjct: 739 YFPR 742 >gi|229521544|ref|ZP_04410963.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80] gi|229341642|gb|EEO06645.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80] Length = 576 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|147678375|ref|YP_001212590.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274472|dbj|BAF60221.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 428 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 12/204 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAII----RLKFMRLAFGY 73 I H++ +P+ +I +L +++ E +++++ + L F Sbjct: 218 IAHEVKNPLTSIRLALYSIEKKSAWKMDFHEDLKILKEAVDRVSRTTEDLLHFSTDTNLR 277 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 VD L + + D ++ S + + K+ NL A A+ Sbjct: 278 VKEVDLNELLKCLVAEFKKQNGKDIIIETSLNKPVPPVLADCEKLNEIFRNLLSNAVAAT 337 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 GG V IS S + +++ G+ E +I + + + Sbjct: 338 GSGGTVRISSSPSFDHVAVTVEDWGSGIPV-EIQQKIFEPFFTTKQSGTGLGLAIAKKNI 396 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + + + L Sbjct: 397 EAHGGTIEVKSEPGWGTKFIVTLP 420 >gi|91223733|ref|ZP_01258997.1| sensor histidine kinase [Vibrio alginolyticus 12G01] gi|91191225|gb|EAS77490.1| sensor histidine kinase [Vibrio alginolyticus 12G01] Length = 679 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ D+ E + I Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEIDAI 492 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 +IL+NL M A ++ G + + G Sbjct: 553 HTSVEINRHHLLQILVNLQMNAIHAMSGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 611 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++I + + + + + L E S L K Sbjct: 612 KPENLSRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGKGSKFSIYLPK 667 >gi|229515810|ref|ZP_04405269.1| signal transduction histidine kinase [Vibrio cholerae TMA 21] gi|229347579|gb|EEO12539.1| signal transduction histidine kinase [Vibrio cholerae TMA 21] Length = 572 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424 Query: 209 LSALLE 214 + + Sbjct: 425 FTLYIP 430 >gi|229026129|ref|ZP_04182503.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272] gi|228735171|gb|EEL85792.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272] Length = 484 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + V + + ++ +S G ++ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVHLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + L+K Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478 >gi|206968294|ref|ZP_03229250.1| sensor histidine kinase [Bacillus cereus AH1134] gi|229068335|ref|ZP_04201638.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185] gi|206737214|gb|EDZ54361.1| sensor histidine kinase [Bacillus cereus AH1134] gi|228714796|gb|EEL66668.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185] Length = 463 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLVVNLDEQRFEQVII 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHRRIFITIEDEGEGIPPEDLPHIFDRFYRVDKARTRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454 >gi|149179764|ref|ZP_01858269.1| hypothetical protein BSG1_02075 [Bacillus sp. SG-1] gi|148851956|gb|EDL66101.1| hypothetical protein BSG1_02075 [Bacillus sp. SG-1] Length = 408 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 60/221 (27%), Gaps = 18/221 (8%) Query: 10 SSMD--LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRL 64 + L + + I H+I +P+ + L+++D + + L+ A + Sbjct: 186 EAEKRGLAGRIAAGIAHEIRNPLTTVRGFLQIMDTKADQETGSLIKSLLIPEIDRANKII 245 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSR 113 + + + + + + T Sbjct: 246 TDFLRIAKPLEASMEKVEVESFLTEYIGKFLNSEALLYNITFTCTISEDAKGCFIDGNKE 305 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 E ++ +NLF ++ + ++ I V K NG+ + + D Sbjct: 306 ELLQVFINLFTNSYQAKEGPLEIMIDVVKKDTNIEIHFKDNGSGIKPSMIP-HVFDPFFT 364 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + S +L Sbjct: 365 TKDDGTGLGLSVSKKIIENHGGDMTVSSNR-EGTTFSIILP 404 >gi|226313959|ref|YP_002773855.1| sporulation kinase B [Brevibacillus brevis NBRC 100599] gi|226096909|dbj|BAH45351.1| sporulation kinase B [Brevibacillus brevis NBRC 100599] Length = 442 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 10/221 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLI 53 + ++L++ L + + H++ +P+ + ++LL E + Sbjct: 200 RKQVERSEKLNLISELAASVAHEVRNPLTVVRGFVQLLREETNPKNVEYIRLVLNELDRA 259 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + K ++ + I V+ + + Sbjct: 260 EFIISDYLNLAKPHSETLERLEIAHTVKEVTAIMSSYSVMNRVEIACETEPGLFVESNAV 319 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + + L+NL S+ +GG + ++V+ + N ++ S+ G PE+ QI Sbjct: 320 KLKQALMNLMKNGIESMGQGGILQVTVRAAGNYHVISIMDEGEGM-TPEQIEQIGLPFYS 378 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + H ++ L Sbjct: 379 TKEKGTGLGLMVTCRIIEAMQGTIHFQSQHGHGTQVTIQLP 419 >gi|218289583|ref|ZP_03493803.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218240233|gb|EED07416.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 590 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 61/218 (27%), Gaps = 24/218 (11%) Query: 20 SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM------- 67 + + H++ +P+ + E L D+ + E+ ++I ++ + + Sbjct: 360 ANVSHELRTPLSMLQGYTEALLDDISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLE 419 Query: 68 -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLN 121 + VD + + + + + + + + + + ++ N Sbjct: 420 SGQFKLHFARVDLTQVMRRVARKFQALASDEDHLSFEVSIPDHPVMVDGDEDRLEQVFTN 479 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 L A G + G+ + F + + + Sbjct: 480 LLDNAFRHTATGTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFERFYKADKARTRSR 538 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L E++ +L E + +L Sbjct: 539 SGTGLGLAIARQLVIEHRGEILVESRLGEGTTFTVVLP 576 >gi|229030338|ref|ZP_04186384.1| hypothetical protein bcere0028_24090 [Bacillus cereus AH1271] gi|228730970|gb|EEL81906.1| hypothetical protein bcere0028_24090 [Bacillus cereus AH1271] Length = 432 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 202 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIEHILEELH 261 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + I ++ + ++ I ++ Sbjct: 262 HAQGIIDDYLTFAKPASEKLDHISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 321 Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + NL ++P GG + IS S N+ I ++ +G+ E+ + + Sbjct: 322 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGSGM-SQEQINRFGEPYF 380 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ L K Sbjct: 381 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTSLTITLPK 423 >gi|229072176|ref|ZP_04205384.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185] gi|228710914|gb|EEL62881.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185] Length = 484 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 STLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|218896945|ref|YP_002445356.1| sensor histidine kinase [Bacillus cereus G9842] gi|218545306|gb|ACK97700.1| sensor histidine kinase [Bacillus cereus G9842] Length = 357 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + + +G + Sbjct: 240 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 352 >gi|313639666|gb|EFS04457.1| sensor protein kinase WalK [Listeria seeligeri FSL S4-171] Length = 610 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 Y-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 D + D +++ + KR + ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDXXXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + T + Sbjct: 503 IISNANKYSPDGGRISFYLKKYEDEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600 >gi|303248916|ref|ZP_07335164.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302489715|gb|EFL49650.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 472 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 61/230 (26%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48 ++ L S L +L L + + H+I +P+ I E + + + Sbjct: 229 LSSREAEILQSKKLASLGTLTAGVAHEITNPVNNISMMAETFETLDEDLSPADRKDMMRQ 288 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 + + L F + + + + + +++ + Sbjct: 289 IQEECGRIHGIVTNLLDFSKPKTASMRQICLNDLVQGTLPLVRNMLHVSNIDLRLDLAPD 348 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++L+N A S+ GG + I+ + + G Sbjct: 349 SPMVKADVSQMHQVLINCITNAIQSMSPGGGLRIATRADDGTARIVVSDTGKGIPPDVLP 408 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ RL E L Sbjct: 409 HIFDPFFSTKGTEGTGLGLSVSYGIVKNHQGRLRVESTVGAGTTCFIDLP 458 >gi|229102993|ref|ZP_04233682.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28] gi|228680408|gb|EEL34596.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28] Length = 801 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 60/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + ++++ +T + Sbjct: 632 RIESITNEFMAVAKPQVLKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + N+ G E+ + + Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795 >gi|229173096|ref|ZP_04300647.1| hypothetical protein bcere0006_22030 [Bacillus cereus MM3] gi|228610429|gb|EEK67700.1| hypothetical protein bcere0006_22030 [Bacillus cereus MM3] Length = 801 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 60/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + ++++ +T + Sbjct: 632 RIESITNEFMAVAKPQVLKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + N+ G E+ + + Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795 >gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1186 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + + + + H+I +PI I L+LL+ ++ E QL+ + SA Sbjct: 794 MAWEKAEAANKAK--SEFLANMSHEIRTPINGIMGGLQLLEATSLDHEQKQLVEMGIASA 851 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104 + + + + + + ++ + + Sbjct: 852 RRLTRLLTDILDLSRIEAGKMEIRKADFEVDRLCTSIEDLFAASAAEKNVRISCTLDPRL 911 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160 +ILLNL A Q ++ + S+ +G Sbjct: 912 PPILAGDDARIQQILLNLVGNALKFTHDDTVELHWHLLRRQGNELRVLISVADSGLGISD 971 Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G + + V+ L + E L Sbjct: 972 EKLGEIFNPFVQADGAFTRNFEGAGLGLSIVVRLVQMMGGNISVESTPGEGSTFYVSLP 1030 >gi|206969941|ref|ZP_03230895.1| sensor histidine kinase [Bacillus cereus AH1134] gi|206735629|gb|EDZ52797.1| sensor histidine kinase [Bacillus cereus AH1134] Length = 484 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + + + L + + + ++ +S G Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVRLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESEIGKGTSIFFSLEK 478 >gi|42779508|ref|NP_976755.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987] gi|42735424|gb|AAS39363.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987] Length = 676 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ + L+LL E ++ + Sbjct: 450 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 509 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + E + Sbjct: 510 ANSIITEFLSIGNTKKSDLQMLDLNSIIRDIIPLIKIDTHNQNKYIQVDTNDVPELLLNR 569 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ GN PE ++ Sbjct: 570 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQKCVVLAVRDEGNGI-RPEVLEKLGTPF 628 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 629 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 665 >gi|325276185|ref|ZP_08141988.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp. TJI-51] gi|324098681|gb|EGB96724.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp. TJI-51] Length = 989 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 72/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 736 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEITELSS 795 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + S + F + + + + V Sbjct: 796 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 855 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A++L+NL A + P G V + + S++ ++ G+ Sbjct: 856 CDPDHWVEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEASEHTVDLIVEDEGSGIPKN 915 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 916 -IQDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 974 >gi|313625271|gb|EFR95100.1| sensor protein kinase WalK [Listeria innocua FSL J1-023] Length = 274 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 47 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 106 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T + ++L N Sbjct: 107 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 166 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 167 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 226 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 227 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 264 >gi|313620815|gb|EFR92041.1| sensor protein kinase WalK [Listeria innocua FSL S4-378] Length = 610 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T + ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600 >gi|117168621|gb|ABK32285.1| Jer5 [Sorangium cellulosum] Length = 508 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 MA+++ + A L + HD+ +P+ A+ S+ +LD +E V + + L Sbjct: 262 MAESLERQREAQ--FAFL-GGVAHDLRNPLSALRLSVHVLDADNRPLESSVRRTMALVGR 318 Query: 59 SAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107 + + + +D + D+ + ++ + + + V E Sbjct: 319 QVDRLDRMVGDLLDASQIEACKLDLRVEERDLRDLAQEAVDLYRPVSPEHPIELSLPETP 378 Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++L NL A P GG+V ++V+ +++ G + Sbjct: 379 VLVRCDATRIEQVLNNLLSNALKYSPAGGQVDVAVRAGGEGAEIAVRDRGLGIEPEDL-A 437 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +I + + + RL E V L + Sbjct: 438 HLFEPFRRLKSTSGSIPGTGLGLAVAKRIVEAHGGRLFVESRPGAGSVFRIELPR 492 >gi|16799393|ref|NP_469661.1| hypothetical protein lin0316 [Listeria innocua Clip11262] gi|16412745|emb|CAC95549.1| lin0316 [Listeria innocua Clip11262] Length = 610 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++H+ LE L ++ I +++ + + I + + Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 G + L + I + T + ++L N Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A+ P GG+++ ++ ++E S+ G + + Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E ++ L Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600 >gi|295400062|ref|ZP_06810042.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312110689|ref|YP_003989005.1| histidine kinase [Geobacillus sp. Y4.1MC1] gi|294977841|gb|EFG53439.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311215790|gb|ADP74394.1| histidine kinase [Geobacillus sp. Y4.1MC1] Length = 367 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 57/217 (26%), Gaps = 14/217 (6%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + L+ + S H+ +P+ AI ++LL + + +I R+ Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFVQLLKMEHPDLPYLNIIDHELQQLKFRISQFLH 211 Query: 70 AFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 A + + V V V + ++ + Sbjct: 212 ASRQEIVESEKETFSLSQLFEEIIEFLYASIVDGDVQISVSVDSAIHIFAYKDQLRQVFI 271 Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 N+ + + ++ K + NG E I + + Sbjct: 272 NILLNSIEAVKEKDKPRCIYIDAYRQGESVYIKIINNGPAI-PEEMVKTIFEPFFTTKKL 330 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y + ++ ++ + H S L Sbjct: 331 GTGIGLYICKKIIEDHGGQITCTSNE-HMTSFSISLP 366 >gi|320160738|ref|YP_004173962.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994591|dbj|BAJ63362.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 521 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 19/226 (8%), Positives = 59/226 (26%), Gaps = 20/226 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKF 66 + +L + S + H++ +P+ I + L + +++ A Sbjct: 295 QAEELKSTFISIVSHELKTPVALIKGYVSTLRREDASWDPEIIQDSLKVIEEEADRLAVM 354 Query: 67 MRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + SL L R+ V + + + + Sbjct: 355 IENLLDASRLQAGGLTLKKSDLSLPELARRVAQRMQTQTSSHRIVVDFPDDFPIVLADEG 414 Query: 117 KILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQI----VDG 170 ++ L + ++ ++ + + N+ I + G + + Sbjct: 415 RLQQVLTNLIGNAIKYAPGGEIRVHGEARGNQIIVCVSDQGPGINPEDVPHVFDRFYRNP 474 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLEK 215 + Y + + R+ + + L + Sbjct: 475 EAAKKTKGAGLGLYLSRAIIEAHGGRIWVDSHPGQQGARICFTLPR 520 >gi|292491779|ref|YP_003527218.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291580374|gb|ADE14831.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 386 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 65/234 (27%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM-------- 50 + ++ + L + + + H++ P+ AI + E LL + Sbjct: 150 QAKLAHMERLSLAGGMAAGLAHELNQPLAAIVSYSEACLNLLHSGKAGTPKLIKIMERIV 209 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106 + + + V+ + +G+ +IE I K W Sbjct: 210 EQGQRAGKITHRLKDLTGKTTRQRIPVNLNVLIGETINLIEAKIRERKVKLRLDLADWLP 269 Query: 107 EKIDLSRERAKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L+NL + ++ + + + +++ +G Sbjct: 270 PVEANPLQLQQVLVNLIQNSLEAMSDIEAHQRRLFIGTAHTASGAIEVAVRDSGPGL-TR 328 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E Q+ V + + + + +L L + Sbjct: 329 EILEQLFQPFVTTKPYGMGLGLSISKSIIEAHGGQLWIISNPGKGGTFHFTLPR 382 >gi|270308781|ref|YP_003330839.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154673|gb|ACZ62511.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 737 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 +N + L A+ + + I H+I +P+ + ELL D +Q+I Sbjct: 358 ENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIGFSELLATREDLPKDVMADLQVI 417 Query: 54 RLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 S L F R +D + + + + Sbjct: 418 NHGSQRVVEIVRRLLTFARQNKPVKTLLDVHELIDNTLEFRGYVFKTANIEIIRRYDLNL 477 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + ++ LNL + A ++ + TI+ + + +G E Sbjct: 478 PWITADPGQLQQVFLNLIINAEQAMRKAHDGGKLTITTAQTNKFFSIRIADDGPGM-TAE 536 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + ++ + E D + L Sbjct: 537 IKAKIFQPFFTTKGPKEGTGLGLSLAMAIILDHHGTIDVESEYDKGATFTINLP 590 >gi|153954094|ref|YP_001394859.1| hypothetical protein CKL_1469 [Clostridium kluyveri DSM 555] gi|219854707|ref|YP_002471829.1| hypothetical protein CKR_1364 [Clostridium kluyveri NBRC 12016] gi|146346975|gb|EDK33511.1| KdpD [Clostridium kluyveri DSM 555] gi|219568431|dbj|BAH06415.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 898 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------------EVGI 45 K I + L L I HD+ +P+ +I + +L ++ Sbjct: 658 QKQISMQIQQEKLRGNLLRTISHDLRTPLTSISGNAGILMGNSKVLSEAQKKGLYTDIYD 717 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +S ++ +I + + Sbjct: 718 DSMWLINLVENILSITRIEDGKINLNLQPELLEEIIAEALCHINRNSVNYHIETIVEDEL 777 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 SR ++++N+ A P G + IS + K + + +G E Sbjct: 778 IMAKVDSRLIIQVIINIVDNAIKYTPPGSHIVISAKRRKQFILVEIADDGPGI-EDEAKD 836 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + H + + + V+ L+ Sbjct: 837 RLFDMFYTVDNIHGDSRRGLGLGLSLCKSIVHAHGGTIYVKDNIPQGTVICFTLQ 891 >gi|228899335|ref|ZP_04063598.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL 4222] gi|228860366|gb|EEN04763.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL 4222] Length = 464 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 296 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 297 QIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 356 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ D +++ G + + Sbjct: 357 NILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRS 416 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 417 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 455 >gi|75906836|ref|YP_321132.1| periplasmic sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700561|gb|ABA20237.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 472 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 77/238 (32%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ + LS + + S + H++ +P+ ++ L+ +L ++ E ++ Sbjct: 235 LAQTLTMLLSRLAQSWEQEREFVSNVSHELRTPLTIVYGYLQSVLRRQNNLTPLQQEALE 294 Query: 52 LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + I L+ + + + + +I + E + ++ + Sbjct: 295 IAASEAERTIRLLQDLLDLARADSGYLYFQMKTYVLNDIVAEIVVMAEKYSDRLITIEST 354 Query: 104 WTGEKIDLSR-ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++ + ++LLNL A +T + ++ I + G Sbjct: 355 ISPIEVKVDYSRFKQVLLNLIDNAVKYSEADTPITFKLDQLQDTAIIQVCDQGYGIPLQH 414 Query: 163 ---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + V L + + + + +L + Sbjct: 415 QARIFERFYRIDESRSQATGGCGLGLSIVKTLVEGMGGSVSVQSKLGEGSIFTIILPR 472 >gi|330960811|gb|EGH61071.1| sensor histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 982 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V + I Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAI 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + ++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVKSEVFEHTVDLIVEDEGSGI-PKAIMDRLFE 921 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 632 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 66/228 (28%), Gaps = 20/228 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + L + L + + H+I +P+ AI +LL D+ E +++I ++ Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + M F + + + ++ + S Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSVKEVINEIVTSFRIKMPDNVALIAPKDSPEC 506 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ N A G +T++ + +E FS+ G+ E Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCITLAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D + + + + R+ Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612 >gi|228906399|ref|ZP_04070282.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL 200] gi|228853215|gb|EEM97989.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL 200] Length = 424 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 257 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 316 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + + Sbjct: 317 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 376 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + +H L Sbjct: 377 TGGTGLGLSIVKEIVELHGGNITVTSEVNHGSCFIISLP 415 >gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21] gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21] Length = 588 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 20/222 (9%), Positives = 54/222 (24%), Gaps = 25/222 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74 + + + H+I +P+ + ELL ++++ ++ S L + + Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHSELDEKQKSYAKMLHHSGESLLDIINDILNISK 257 Query: 75 ----------GSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKIL 119 D ++ + V+ +++ ++L Sbjct: 258 IEAGKLEIERIPFDLHETARGAVELYREVGRGKGVAVELQIEEDVPRCVAGDPNRLRQVL 317 Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIV-----DG 170 +N+ +G + F +K G DG Sbjct: 318 INVVNNGLKFTEKGSVQVRVSLVEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFAQVDG 377 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L + E + + Sbjct: 378 STTRKYGGTGLGLAIAKQLVELMGGEIGVESEPGQGSTFTFI 419 >gi|254229540|ref|ZP_04922953.1| sensor histidine kinase [Vibrio sp. Ex25] gi|151937913|gb|EDN56758.1| sensor histidine kinase [Vibrio sp. Ex25] Length = 682 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ D+ E + I Sbjct: 436 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEVDAI 495 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 496 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 555 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 +IL+NL M A ++ G + + G Sbjct: 556 HTSVEINRHHLLQILVNLQMNAIHAMNGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 614 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + + + + + L E S L K Sbjct: 615 KPENLNRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGKGSKFSIYLPK 670 >gi|125623280|ref|YP_001031763.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363] gi|124492088|emb|CAL97017.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070031|gb|ADJ59431.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 475 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 31/229 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67 L S + H++ +P+ ++ LE L++ I+D+ + L Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIDDKETASSFIGVSLTETNRMIRMISDLLTLS 289 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112 R+ +I L + + R + Sbjct: 290 RMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDT 349 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166 + A+++ N+ A P+GG +TI V+ + + + S+K G ++F + Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITIYVETRERDVLISIKDEGMGIPKSDLLKIFDRFYR 409 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + S + + V + + + + S L Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458 >gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 929 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL +++ E +++++ ++ Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 751 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + G D + DI + + + + Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSDCT 811 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +R +++ N A G + + + + F + G + Sbjct: 812 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 870 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + + + + + + Sbjct: 871 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEERKGSRFWFTIP 918 >gi|228954943|ref|ZP_04116961.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804764|gb|EEM51365.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 484 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 STLYVTADCEKINRVISNLVHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|222096169|ref|YP_002530226.1| sporulation kinase b [Bacillus cereus Q1] gi|221240227|gb|ACM12937.1| sporulation kinase B [Bacillus cereus Q1] Length = 422 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLHISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMHGSLKIRSVMNKGTTLTITFPK 413 >gi|301308440|ref|ZP_07214394.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300833910|gb|EFK64526.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 659 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 60/230 (26%), Gaps = 19/230 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + + + H+I +P+ AI ++L + + + + + Sbjct: 425 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRQEFADIIQNNN 484 Query: 61 IIRLK-------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + +L+ ++ V+ + Sbjct: 485 ELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHEGVELELYDCEELV 544 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 +IL NL A G + F ++ +G + F Sbjct: 545 METDRNRLTQILTNLLTNAIKHTQEGSIRFGYKRS-ALSVEFFVQDSGEGIPEDKIDTIF 603 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ V + S + L + + V L Sbjct: 604 SRFVQLDNWSK--GVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 651 >gi|294506872|ref|YP_003570930.1| Signal transduction histidine kinase, membrane [Salinibacter ruber M8] gi|294343200|emb|CBH23978.1| Signal transduction histidine kinase, membrane [Salinibacter ruber M8] Length = 668 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 57/231 (24%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSS 57 M + + L + L + H++ +PI I E++ E E +Q+ Sbjct: 420 MLRAKQEAEQAARLKSTLIHNMSHELRTPITTITGYAEVIMEEAEEPHRSFALQIRESGR 479 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + +A +G+++ + + DK + + + Sbjct: 480 RLSDTLQSVLDMAQIESGTLEVTVQEVSVPGVVRDVVDRHAQAIEDKALTAELDVPEDCV 539 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKFTQIV 168 +L + + + + + ++ G + Sbjct: 540 VATDRALLYRILNNLVQNAVKFTEKGRCQVRVEPVAFGVRIHVRDTGVGIDPAFRPHLFE 599 Query: 169 DG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + L + + + L Sbjct: 600 PFKQESEGVAREYEGIGLGLALTKRLVDLLGGAIEVDSAKGEGSAFTVELP 650 >gi|262382344|ref|ZP_06075481.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295222|gb|EEY83153.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 637 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 60/230 (26%), Gaps = 19/230 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + + + H+I +P+ AI ++L + + + + + Sbjct: 403 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRQEFADIIQNNN 462 Query: 61 IIRLK-------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + +L+ ++ V+ + Sbjct: 463 ELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHEGVELELYDCEELV 522 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 +IL NL A G + F ++ +G + F Sbjct: 523 METDRNRLTQILTNLLTNAIKHTQEGSIRFGYKRS-ALSVEFFVQDSGEGIPEDKIDTIF 581 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ V + S + L + + V L Sbjct: 582 SRFVQLDNWSK--GVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 629 >gi|229113327|ref|ZP_04242787.1| hypothetical protein bcere0018_55070 [Bacillus cereus Rock1-15] gi|228670125|gb|EEL25508.1| hypothetical protein bcere0018_55070 [Bacillus cereus Rock1-15] Length = 801 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 17/225 (7%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795 >gi|30021212|ref|NP_832843.1| sporulation kinase [Bacillus cereus ATCC 14579] gi|229128436|ref|ZP_04257416.1| hypothetical protein bcere0015_28820 [Bacillus cereus BDRD-Cer4] gi|296503641|ref|YP_003665341.1| sporulation kinase [Bacillus thuringiensis BMB171] gi|6686907|emb|CAB64771.1| kin1 [Bacillus cereus ATCC 14579] gi|6759471|emb|CAB69799.1| putative sensory transduction histidine kinase [Bacillus cereus ATCC 14579] gi|29896766|gb|AAP10044.1| Sporulation kinase [Bacillus cereus ATCC 14579] gi|228655019|gb|EEL10877.1| hypothetical protein bcere0015_28820 [Bacillus cereus BDRD-Cer4] gi|296324693|gb|ADH07621.1| sporulation kinase [Bacillus thuringiensis BMB171] Length = 801 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 17/225 (7%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795 >gi|261250560|ref|ZP_05943135.1| osmolarity sensory histidine kinase EnvZ [Vibrio orientalis CIP 102891] gi|260939129|gb|EEX95116.1| osmolarity sensory histidine kinase EnvZ [Vibrio orientalis CIP 102891] Length = 435 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIIGDTEECNEIISQFMD 279 Query: 66 FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ + VD D+ + + E I + + NL Sbjct: 280 YLKPVNKDSFIPVDLNDIANDVASSEGGYEVQIETELHQPLKETIGSPIAIKRAVSNLVT 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + ++ NG + F G+ + + Sbjct: 340 NAIRYGNDWIKVSTGITADNKLVWVCIEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + Sbjct: 400 GLAIVKRIVSQHNGSVIVNNRSGGGLKVQISFP 432 >gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 546 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49 + ++ +L + + + + H++ +P+ A+ E+L + + E Sbjct: 300 ERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLAYTEMLLDPTTGPLTPEQREC 359 Query: 50 MQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVD 97 ++ + S + +++A G + D+ +V+++ Sbjct: 360 LENIADSSKELLLEITDLLQMARLEAGRKELFYEPFDMAEVVQEVFSLLGPLARKKRIKL 419 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKIN 154 + + + IL NL A GGKVT+ D+ + + Sbjct: 420 CGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKVTVKLSYGFDTTRYMLVKVTDT 479 Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G E+ + V L + R+ E I L Sbjct: 480 GVGIDPAEQEVIFEKFYRSKKHSQGTGLGLTLVRELVQLHGGRVWVESIPGQGSSFYFTL 539 Query: 214 E 214 Sbjct: 540 P 540 >gi|295399964|ref|ZP_06809944.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312110788|ref|YP_003989104.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294977743|gb|EFG53341.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311215889|gb|ADP74493.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 418 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 82/223 (36%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57 ++ + M++V+ L + I H+I +P+ + ++LL + + Sbjct: 194 RSKLVKIEKMEVVSQLAASISHEIRNPLTVVKGFIQLLKTPSLPQNTKDRYIQIALDEIN 253 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112 + I ++ A + V+ L+ ++++V++ + + G + Sbjct: 254 RAEAIINDYLTFAKPTSDKVECLMVNEELQKVVQMLAPMAHMNSIEIVKKLEPGAIVGNI 313 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG +TIS + N I ++K G E+ + + Sbjct: 314 QYFQQCFLNLLKNSIEAMPNGGTLTISSRLHGNHVIITIKDTGVGM-TAEQVNRFGEPYF 372 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + +L E + L+ K Sbjct: 373 STKDKGTGLGTMVAVKTIQAMQGKLHIESEVNKGTTLTITFPK 415 >gi|229177175|ref|ZP_04304564.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W] gi|228606356|gb|EEK63788.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W] Length = 463 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFITRIAEKVNAMYKERYIKVSFSCPPTLVVNLDEQRFEQVII 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHRRIFITIEDEGEGIPPEDLPHIFDRFYRVDKARTRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454 >gi|297583314|ref|YP_003699094.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297141771|gb|ADH98528.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 609 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 13/217 (5%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63 + L L + H+I +P+ I L L+D E E + L++ + Sbjct: 384 QAEKLAVVGELAAGAAHEIRNPLTVIDGFLSLMDQTLPEKDKERFQLPLLKKEAKRIDQI 443 Query: 64 LKFMRLAFGYTGS------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 ++ M L V+ L+ + + + + Sbjct: 444 IEDMLLMSKPGDPILEEASVNELMEEMVPLVEALPNYKDICFSIKTTDEPVLMDKEQMKQ 503 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 ++ NLF A ++ G++ ++ + + +G ++ D S Sbjct: 504 VVHNLFRNAVDAMDGSGEIRVTSAVEEGMVKVQIGDSGPGI-PEPLQAKLFDPFRTSKKG 562 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + Sbjct: 563 GTGLGLTIAQRILQNHGGTIRLLPHKGTGACFELSWP 599 >gi|229060824|ref|ZP_04198179.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603] gi|228718471|gb|EEL70103.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603] Length = 448 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +A N S+ + S + H+ SP+ +I + L +++ Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105 I S K + L Q + ++ +K + V + Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFHLQKQIKDVIFMLEWKWREKDIAVEFD 330 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 I + + ++ N+F + GG V V++ ++ + S+ NG E Sbjct: 331 VPNITIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEELESSIVISISDNGIGMEKEE 390 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D ++ + V + + + + L K Sbjct: 391 -MDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448 >gi|197121029|ref|YP_002132980.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170878|gb|ACG71851.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 516 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + + L + L A+ + ++I H+I +P+ AI + ELL E Sbjct: 270 LDRQRAELLRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLV 329 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105 + L +I + + A V + Sbjct: 330 SAISREVDRLNAVTEEYLRFARLPRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALA 389 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160 + + ++ + ++P GG VT+ + + + + G Sbjct: 390 PGLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPP 449 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + + E+ + E + + Sbjct: 450 GDLT-RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502 >gi|289551852|ref|YP_003472756.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|315659977|ref|ZP_07912835.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590] gi|289181383|gb|ADC88628.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|315494878|gb|EFU83215.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590] Length = 607 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 66/220 (30%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + + R + I + + Sbjct: 378 FVANVSHELRTPLTSMNSYIEALESGAWKDGALAPQFLSVTREETERMIRLVNDLLQLSK 437 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ E ++ N+ Sbjct: 438 MDNESDQINKEIVDFNMFINKIINRHEMSAKDTTFVREIPNETIFAEIDPDKMTQVFDNV 497 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFTQIVDGNV------ES 174 A +V V+ + N +++ NG + +I D Sbjct: 498 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKV-EKIFDRFYRVDKARTR 556 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 557 KMGGTGLGLAISKEIVEAHHGRIWANSVEGQGTSIFITLP 596 >gi|229060332|ref|ZP_04197698.1| hypothetical protein bcere0026_24320 [Bacillus cereus AH603] gi|228718922|gb|EEL70539.1| hypothetical protein bcere0026_24320 [Bacillus cereus AH603] Length = 439 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 208 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 267 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112 R ++ + I ++ + + ++ I + Sbjct: 268 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNNINITKEFSEGTIIGNT 327 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 328 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIVRIQDSGVGM-SQEQINRFGEPYF 386 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L I + L+ K Sbjct: 387 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 429 >gi|258510064|ref|YP_003183498.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476790|gb|ACV57109.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 370 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 61/230 (26%), Gaps = 18/230 (7%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 + + L ++ + + + H++ +P+ +I ++ L G + +I S Sbjct: 135 REMAEGLERIEQMRQEFVANVSHEMQTPLTSILGFVKALKSDGLSEGERRHYLDIIEAES 194 Query: 58 MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGE 107 + L ++ E E Sbjct: 195 ERLSRLADNLLKLTSLESGHHPVTLTRFRLDRQLREVAIACEPLWTEKGLFLDMQVEPVE 254 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 ++ +NL A GG++ + ++ + S+ G R + F Sbjct: 255 LEGDEDLLGQVWMNLLSNAIKFTEPGGRIQVRLEKEETGVCVSVADTGIGIRPEDVSRVF 314 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T+ + + + + ++ + E L Sbjct: 315 TRFFKADRSRGKPGNGLGLAIAKRIVEMHRGDISVESEPGRGSTFKVHLP 364 >gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 702 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 306 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKGLSVI 365 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M + LG E V E V + Sbjct: 366 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHV 425 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++ NL A P G++ ++V+ I S++ +G+ Sbjct: 426 PPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIASE 485 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + D + V L + ++ + L Sbjct: 486 FLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 544 >gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 591 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---------MSAIIRLKFMR 68 + + H++ +P+ AI S E L +E++ + L Sbjct: 372 FVANVSHELRTPLTAIRGSSETLLGGALENQHYAKHFVEMIARNASRLERLTQDLLDLAA 431 Query: 69 LAFGYTGSVDSLIG-----LGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRERAKILL 120 + G V I + V E ++ + R + +L Sbjct: 432 MESGREELVKEAIDGASLADSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVL 491 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175 NL A GGKVT+++ +++ + S+K +G F + + Sbjct: 492 NLLDNAIKYTESGGKVTLALTEAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQ 551 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V +A ++ R+ E + +L Sbjct: 552 MGGTGLGLAIVKHIAQKHGGRVEVESTPGQGSTFTLVLP 590 >gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1137 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 36/249 (14%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEV 49 +A+ +++ + + + H++ +P+ A+ ELL E + E Sbjct: 738 LAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNAVIGFSELLQGADVEPQEQQEY 797 Query: 50 MQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---- 97 + I + + + + VD + +I V + Sbjct: 798 LGSINFAGNALLNLINDVLDLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAVEKNLSL 857 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLK 152 + + +ILLNL A GG +V + IFS+ Sbjct: 858 QMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGGVTVSAVFRLAEEAGQGTLIFSIT 917 Query: 153 INGNLARFPEKFTQIVDGNV-------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 G PEK +QI + V + + L + +L E Sbjct: 918 DTGIGI-LPEKISQIFEPFVQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSAESTPGK 976 Query: 206 NVVLSALLE 214 + LE Sbjct: 977 GSTFTVRLE 985 >gi|148654494|ref|YP_001274699.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566604|gb|ABQ88749.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 407 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 65/246 (26%), Gaps = 33/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L AL + + + H++ +P+ I + ELL ++ ++++ Sbjct: 152 LRTMQAQLVQSSKLAALGEIVAGVAHELNNPLAIILGNAELLSPQHDPEDQRSVAQIIES 211 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEK 108 + + F R + + + + + V S Sbjct: 212 AKRARRVVQSLATFARRGPMAKEWTSPTDLIERVLDLKRAALRSSGIALEVVCSSDLPMI 271 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------------------KNENIFS 150 + ++LLNL A +L + + F Sbjct: 272 WVDIPQMQQVLLNLLHNAEYALAGMPAPQVWLTVVRGHAEKPPLPPAQAASAGGAFVCFD 331 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + NG ++ V + + + + ++L Sbjct: 332 VADNGPGI-PDHVIERLFQPFVTTRPPGRGSGLGLAIAYGIVTGHGGQILINTQAAQGTA 390 Query: 209 LSALLE 214 + L Sbjct: 391 VRVALP 396 >gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 632 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 20/228 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + L + L + + H+I +P+ AI +LL D+ E +++I ++ Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + M L F + + + ++ Q S Sbjct: 447 RMLLQLISDILDLAKIESGTMDLKFADMNVKEVINEIVTSFRIKMPDNVALIAPQDSPEC 506 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ N A G +T++ + +E FS+ G+ E Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCITLAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D + + + + R+ Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612 >gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] Length = 580 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 24/228 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFM 67 + + + H++ +PI +I E L + I+D+ + + + ++ + Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAIDDKEALTEFLSIILKESVRLETLI 411 Query: 68 RLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + L + + ++ V E + + + Sbjct: 412 QDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQLHVRVPKEPVYVMADP 471 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +I LNL A P GG VTIS + K F + G + E +I + Sbjct: 472 LRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIP-RIFERFY 530 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L ++ + + L+ Sbjct: 531 RIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLK 578 >gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 882 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 56/229 (24%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + + H+I +P+ AI LL ++ + I + + + Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + ++ V+ Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++ N A +G + + F +K G + Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDDE-LYFYVKDTGCGIAKDKIGQV 692 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + ++ + E L Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741 >gi|229112871|ref|ZP_04242402.1| hypothetical protein bcere0018_51080 [Bacillus cereus Rock1-15] gi|228670550|gb|EEL25863.1| hypothetical protein bcere0018_51080 [Bacillus cereus Rock1-15] Length = 672 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFYLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 882 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 56/229 (24%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + + H+I +P+ AI LL ++ + I + + + Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + ++ V+ Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++ N A +G + + F +K G + Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDDE-LYFYVKDTGCGIAKDKIGQV 692 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + ++ + E L Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741 >gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 539 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H++ +P+ AI ELL E + E + R +A Sbjct: 183 LRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAETPLNQEQDEYCRTIRQAA 242 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS------W 104 + LA G +D + + + A K ++++ Sbjct: 243 AALLNLINDILDLAKIEAGKLDLETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGL 302 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160 S ++L+NL A +GG K F+++ +G Sbjct: 303 PDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISP 362 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DG+ + L ++ S +E Sbjct: 363 HRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIE 421 >gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 588 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 67/236 (28%), Gaps = 23/236 (9%) Query: 2 AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + + H++ +P+ I ++L + E ++ + Sbjct: 188 RQRLYEQAQTANRLKDEFLATVSHELRTPLNVILGHSDILKDPATSPEEAKVSINAIHRN 247 Query: 61 IIRLKFMRLA------------FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGE 107 + + +D + E V + + +V+V Sbjct: 248 AQIQVQIINDLLDVSRIISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPER 307 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++L NL A P+GG +T+ + + ++ + NG Sbjct: 308 LKSVGGDPERLQQVLWNLLSNAIKFTPKGGNITVKLSNVESRVQIDVIDNGKGIDPEFLP 367 Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + V + + + + + L Sbjct: 368 YVFERFRQEDATTTRRYGGLGLGLAIVRHIVEGHGGTVAATSAGPNQGAKFTVSLP 423 >gi|304404947|ref|ZP_07386607.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304345826|gb|EFM11660.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 457 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 70/223 (31%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRL 64 + L L + + I H+I +P+ +I ++LL ++ DE ++I A + Sbjct: 233 QNDKLAMLGKIAAAIAHEIRNPLTSIRGFIQLLRPHLLQLGKDEYARIIVAEIDRANDII 292 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEK---IDLSRERA 116 + T + + + + + + +Q+ E ++ Sbjct: 293 YEFLNSSKPTAPMKQEVSINALLKEVILLTESEALMRGCLIQLEAYEETLLVSIDVKQVK 352 Query: 117 KILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +++LN+ + ++ VQ S +L+ NG ++ D Sbjct: 353 QVILNIMKNSLDAIEEINGSRNGRIDVIVQRSPEGVEITLRDNGKGMDRSTLS-RLFDPF 411 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + D L Sbjct: 412 FTTKEAGTGLGLSVSYRIIRNHGGTIRVDSVPDEGTSFMINLP 454 >gi|229009818|ref|ZP_04167038.1| hypothetical protein bmyco0001_2880 [Bacillus mycoides DSM 2048] gi|228751436|gb|EEM01242.1| hypothetical protein bmyco0001_2880 [Bacillus mycoides DSM 2048] Length = 672 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + +L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEHTYEKHNKYFKLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTKKSDLQMLDLNSIIHDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661 >gi|229917478|ref|YP_002886124.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] gi|229468907|gb|ACQ70679.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] Length = 613 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 58/218 (26%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ + + LE+L + + ++ + + I + + Sbjct: 387 FVANVSHELRTPLTTMRSYLEVLAEGAYQDEELAPRFLETTQNETERMIRLVNDLLQLSK 446 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLN 121 V + + + +Q K + +++ N Sbjct: 447 MDSKEYKMQKVKFDFVQFFNDIIDRHEMTKGDAIQFRRKLMKRRVYVHADQDKMTQVIDN 506 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTI 176 + A P GG +T + +K G + F + + I Sbjct: 507 IITNAIKFSPEGGTITFRTMLRAKRLVIGIKDEGVGIPKSNLKKIFERFYRVDKARARNI 566 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + + Sbjct: 567 GGTGLGLSIAKEVVSAHGGDIWAESEFGRGTTIYFTIP 604 >gi|324326022|gb|ADY21282.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 356 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVCIP 352 >gi|228945600|ref|ZP_04107950.1| hypothetical protein bthur0007_17600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814118|gb|EEM60389.1| hypothetical protein bthur0007_17600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 293 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + I +K +++ EK+ Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPIWAEKEIELDLDLEKV 175 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ +G + Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 235 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 236 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288 >gi|229172680|ref|ZP_04300238.1| hypothetical protein bcere0006_17910 [Bacillus cereus MM3] gi|228610812|gb|EEK68076.1| hypothetical protein bcere0006_17910 [Bacillus cereus MM3] Length = 351 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQTVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 HIIADQESMSQVWINLIHNSIKFTPIGGTITIQLKEYEKVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADTSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGDGTEFIVCIP 346 >gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413] gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413] Length = 1156 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----------LLDEVGIEDEVMQ 51 + L I H+ +PI I LE + Sbjct: 502 REQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLESAVGTGEGLSYAQSAIALRNSRR 561 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108 L+RL + ++ D + + I + + ++ Sbjct: 562 LLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELDECPTV 621 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 + K++ NL A P GG +++ +Q + I ++ G + Sbjct: 622 YIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIPHLFE 681 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +G+ + + + V L + R+ E + + L Sbjct: 682 RFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVESVYGKGTTFTLWL 731 >gi|42781730|ref|NP_978977.1| sporulation kinase B [Bacillus cereus ATCC 10987] gi|42737653|gb|AAS41585.1| sporulation kinase B [Bacillus cereus ATCC 10987] Length = 422 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 73/223 (32%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + I+ + +L Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTSNLTPESRDKYIDHXLEELN 251 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 R + I ++ + ++ I ++ Sbjct: 252 RAQEIIDDYLTFAKPAPEKLDHISVEQELNRVINMIVPLCNMNTVHITKDFSNATIVGNK 311 Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + NL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGNLKIRSVMNKGTTLTITFPK 413 >gi|17232455|ref|NP_489003.1| adenylate cyclase [Nostoc sp. PCC 7120] gi|17134101|dbj|BAB76662.1| adenylate cyclase carring two-component hybrid sensor and regulator domains [Nostoc sp. PCC 7120] Length = 1155 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----------LLDEVGIEDEVMQ 51 + L I H+ +PI I LE + Sbjct: 502 REQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLESAVGTGEGLSYAQSAIALRNSRR 561 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108 L+RL + ++ D + + I + + ++ Sbjct: 562 LLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELDECPTV 621 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 + K++ NL A P GG +++ +Q + I ++ G + Sbjct: 622 YIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIPHLFE 681 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +G+ + + + V L + R+ E + + L Sbjct: 682 RFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVESVYGKGTTFTLWL 731 >gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 643 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 61/252 (24%), Gaps = 42/252 (16%) Query: 3 KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------- 48 + L + ++ + S + H++ +P+ +I +LL + + Sbjct: 391 EEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLHKEFTRNYLPLAQNEPLLVKK 450 Query: 49 ------VMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 + +I + ++ + Q + Sbjct: 451 GQRIQNNLLIISHEGERLTRLINDVLDLNKIESGSMGWRDERLNMSDIVETAVQSVTGLF 510 Query: 95 AVDKRVQVSWTGEK-----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 + + +V + + I ++L+NL A G + Sbjct: 511 SQNPQVGLVSEIDPALPVVIADPDRMQQVLINLLNNAAKFTDDGSVTVRAFPRFGQ-VRV 569 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI-------DSHDIQFYYVILLAHENKIRLLPEII 202 + G PE +I + ++ + + R+ E Sbjct: 570 EIADTGVGIH-PEDQNRIFEKFHQTKTATMGDKPKGTGLGLTICREIVEHYSGRIWVESE 628 Query: 203 DDHNVVLSALLE 214 L Sbjct: 629 PGKGSTFIFTLP 640 >gi|260173264|ref|ZP_05759676.1| two-component sensor histidine kinase [Bacteroides sp. D2] gi|315921537|ref|ZP_07917777.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695412|gb|EFS32247.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 406 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 61/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI +L+ +++ ++I +S + Sbjct: 184 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 243 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ +D + L V Sbjct: 244 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFCHKTQNGVKLILDDVDADMYTSGDWNRI 303 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +I+ NL A P+G + ++ ++ F +K +G T Sbjct: 304 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVND 362 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L + R+ + L Sbjct: 363 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 402 >gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 967 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 60/238 (25%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + H+I +P+ + ELL E + +E + + S Sbjct: 291 LEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDLTEEQRRFSKTIQSSG 350 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSW 104 + + G ++ +++ +I+D + + + Sbjct: 351 SSLLAIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLIPPET 410 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 ++L NL A + T ++ + ++ G Sbjct: 411 CIFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQVATTVSDQNRVKLHVLIRDTGIGISQ 470 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + ++ + + L E S Sbjct: 471 QDL-QRLFSPFSQADGSTTRKYGGTGLGLAISKEIVALMGGDLHCESEPGKGSTFSFT 527 >gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 813 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 72/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEV---GIEDEVM 50 K + +VA +R + H++ +P+ A+ +LL + ++ Sbjct: 536 RKQAEERMLQAKMVAEAANRAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPLNEKQK 595 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + S S L + + I L + I +RV + +K Sbjct: 596 RYTENISKSGNHLLDVINDVLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSADKNI 655 Query: 111 LSRERA---------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + +IL N+ A GKV I + ++ S++ G Sbjct: 656 IIESYIEKDLKTVIADRVKLKQILYNILNNAIKFSSENGKVNIYAEPREDMIEISVEDEG 715 Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + ++ + + V + ++ + + Sbjct: 716 IGIQESD-YEKVFQPFVQIDESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGGGSIF 774 Query: 210 SALLEK 215 + + K Sbjct: 775 TFRIPK 780 >gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 822 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K L + L + + H+I +P+ I ++LL+ + +E + IR+ S+ Sbjct: 307 KERRSALDTARAKDLFLANMSHEIRTPLNGIVGFIQLLETTPLNEEQREFIRVVQESSQN 366 Query: 63 R----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQVSWTG 106 + + G V+ D E I V + G Sbjct: 367 LLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALHKGIDFAVYVDPALPG 426 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFP 161 + +++L+NL A RGG+V++ Q F + G Sbjct: 427 RILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVFVKFVVSDTGIGIAL- 485 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ +I D + L +L E L Sbjct: 486 DQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVESEPGKGSSFFFTLP 544 >gi|305680514|ref|ZP_07403322.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660045|gb|EFM49544.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Corynebacterium matruchotii ATCC 14266] Length = 491 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 20/209 (9%), Positives = 60/209 (28%), Gaps = 16/209 (7%) Query: 23 CHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 H++ +P+ ++ EL + ++ ++ +++ + L D Sbjct: 280 SHELRTPLTSVKGYAELYRSGATTDATMVMKKIEEEAARMSLLVEDLLSLTRSEEARFDE 339 Query: 80 LIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 + +++ + + + + ++L NL + + Sbjct: 340 APVDMLALGLSVVGSLRAAYPERSIEVDAKATDMPMVMGDTARLHQVLTNLIVNSLKHGG 399 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTIDSHDIQFYYV 186 K +S+ N I + +G + P F + + + V Sbjct: 400 EEAKARLSIDTDDNHVILEVSDDGVGVQEADLPHIFERFYRADTSRTRATGGSGLGLAIV 459 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + E +L K Sbjct: 460 KTIVEAHQGAISVESTVGEGTSFRIVLPK 488 >gi|225022168|ref|ZP_03711360.1| hypothetical protein CORMATOL_02202 [Corynebacterium matruchotii ATCC 33806] gi|224945101|gb|EEG26310.1| hypothetical protein CORMATOL_02202 [Corynebacterium matruchotii ATCC 33806] Length = 491 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 20/209 (9%), Positives = 60/209 (28%), Gaps = 16/209 (7%) Query: 23 CHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 H++ +P+ ++ EL + ++ ++ +++ + L D Sbjct: 280 SHELRTPLTSVKGYAELYRSGATTDATMVMKKIEEEAARMSLLVEDLLSLTRSEEARFDE 339 Query: 80 LIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 + +++ + + + + ++L NL + + Sbjct: 340 APVDMLALGLSVVGSLRAAYPERSIEVDAKATDMPMVMGDTARLHQVLTNLIVNSLKHGG 399 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTIDSHDIQFYYV 186 K +S+ N I + +G + P F + + + V Sbjct: 400 EEAKARLSIDTDDNHVILEVSDDGVGVQEADLPHIFERFYRADTSRTRATGGSGLGLAIV 459 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + E +L K Sbjct: 460 KTIVEAHQGAISVESTVGEGTSFRIVLPK 488 >gi|197120728|ref|YP_002132679.1| histidine kinase [Anaeromyxobacter sp. K] gi|196170577|gb|ACG71550.1| histidine kinase [Anaeromyxobacter sp. K] Length = 707 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 63/230 (27%), Gaps = 26/230 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 M+ V LL I HD + + I ELL + Q R + L Sbjct: 338 QKMEAVGLLAGGIAHDFNNLLTGILGYAELLGEAGTAADEAAAGIRQAARRGAALTRQLL 397 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 F R V+ + ++ ++E + ++ + + ++ + Sbjct: 398 GFARRGKYQQVPVNVHALVREVSALLERTLDKRIAIRHRLAAGSAVVRGDPDQLQQVVLN 457 Query: 125 ---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEKFTQ 166 A ++P GG +T V + + G + Sbjct: 458 LAVNARDAMPSGGTLTFEVAEVELDAEGTRARPGLAPGPHVAVMVADTGVGIPAV-VRDR 516 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + V + + + E + + LL Sbjct: 517 VFDPFFTTKPAGQGTGMGLAMVYGIVQNHGGWVGFESEEGKGARFTVLLP 566 >gi|78355367|ref|YP_386816.1| periplasmic sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217772|gb|ABB37121.1| periplasmic sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 576 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 76/227 (33%), Gaps = 21/227 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------------VGIEDEVMQLI 53 + L ++ L + + H+I +P+ I+ L+++ + V+Q + Sbjct: 342 HAHKLSSIGRLAAGVAHEINNPLAIINEKAGLMNDLMEHGNDEIIRAKFPELVASVLQSV 401 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112 L F R +D + ++ + ++ + + ++++ + +S Sbjct: 402 SRCRTITHRLLGFARRMEVQVEPLDVNEIVREVLGFLEKESLYRNISLELNLDDDLPRIS 461 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIV 168 +R ++ LN+ A A++ GG+V I+ + + + NG Sbjct: 462 SDRGQLQQVFLNIINNAIAAVDNGGRVQITTRSVDLDTVAVLITDNGVGMSDEVLSHIFE 521 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + R+ + + L K Sbjct: 522 PFFTTKGAEGTGLGLAITYGIVQKLGGRIAVASEEGKGSTFTIELPK 568 >gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 453 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 77/225 (34%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I+ +E L + IE +++I + Sbjct: 227 ERMRTEFVANVSHELRTPLTSINGFVETLLDGAIEEPIIARNFLEIISAEGKRLANIIDD 286 Query: 67 M--------RLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRER-- 115 + R VD +G+ + E + + ++ + + + ++ Sbjct: 287 LLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQITTEISPKLPLVPGDQGF 346 Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171 +++++NL A GG V ISV+ +++E ++ G P F + + Sbjct: 347 LSQVMINLVDNAIKYTLTGGTVHISVKFNEHEVTVTVSDTGIGIPIESIPRVFERFYRVD 406 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ E D S L Sbjct: 407 KARSREMGGTGLGLSICKHIMEAHGGKIRVES-DSSGSQFSFSLP 450 >gi|332702637|ref|ZP_08422725.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552786|gb|EGJ49830.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 616 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + L A+ + + H+I +P+ AI ++ E + E ++ + Sbjct: 370 LRRLEQEVKRNERLAAIGSFSAAMAHEIRNPLTAIKTYTGMVWEKSSQPEFLESFDRNVS 429 Query: 59 --------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109 L+ R + +D L D + ED + + Sbjct: 430 AGIGRIEGIVNDLLQLSRPPKLHLEPLDIGEVLDDALALLGEDLESARVTLSFDREACGH 489 Query: 110 DLSRERAKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKING 155 ++ +R ++ LF + ++ S ++ + S+ G Sbjct: 490 VITGDREQLYRALFNIMLNAIQAMKGAGGGGRLEISAHPNQIRSKTGAREAIMLSIADTG 549 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ L V S +L Sbjct: 550 PGIPPEILDEIFNPYFTTKGQRGTGLGLAITHKIIAEHGGSLGAANRQGGGAVFSVVLP 608 >gi|330447152|ref|ZP_08310802.1| osmolarity sensor protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491343|dbj|GAA05299.1| osmolarity sensor protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 444 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 8/213 (3%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKF 66 + ALL + + HD+ +P+ I + E++ E + +++ + Sbjct: 226 QLEEDRALLMAGVSHDLRTPLTRIRLATEMMSPEDSYLAESMITDTEECNAIISQFMDYL 285 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 +D L D+ + ++ G + + + NL + A Sbjct: 286 KSTKKQEEEELDLNTLLLDVAHTEGGYSKTIEQQLGEIPGTVSANAVALKRAVANLVVNA 345 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDI 181 K++ + F ++ +G + S + + Sbjct: 346 QRYGNGWVKISSGASVDRKSAWFCVEDDGPGIAPDQVTKMFQPLTRGDSARGSEAEGTGL 405 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ +L + + + L Sbjct: 406 GLAIVKRIVDQHDGVILVRNRSEGGLRVEVTLP 438 >gi|229096501|ref|ZP_04227472.1| hypothetical protein bcere0020_17480 [Bacillus cereus Rock3-29] gi|229115475|ref|ZP_04244881.1| hypothetical protein bcere0017_17680 [Bacillus cereus Rock1-3] gi|228667888|gb|EEL23324.1| hypothetical protein bcere0017_17680 [Bacillus cereus Rock1-3] gi|228686707|gb|EEL40614.1| hypothetical protein bcere0020_17480 [Bacillus cereus Rock3-29] Length = 351 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 72/234 (30%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + + +G + Sbjct: 234 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + E + + + K Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHEGEIKVESEEGNGTEFIVCIPK 347 >gi|206978378|ref|ZP_03239250.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|206743412|gb|EDZ54847.1| sensor histidine kinase [Bacillus cereus H3081.97] Length = 463 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 60/219 (27%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E + ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSSKQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKSISIAIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454 >gi|52142853|ref|YP_083976.1| sporulation kinase B [Bacillus cereus E33L] gi|51976322|gb|AAU17872.1| sporulation kinase B [Bacillus cereus E33L] Length = 422 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 252 RAQEIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 413 >gi|228914577|ref|ZP_04078186.1| hypothetical protein bthur0012_18070 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844896|gb|EEM89938.1| hypothetical protein bthur0012_18070 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 293 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G+ + Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 235 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288 >gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM 17393] gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM 17393] Length = 1039 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI +L E E + + + + Sbjct: 664 LTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEQEKQEYVSIIENNN 723 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWT 105 + + L+ G+++ ++ +++ + + V+ + Sbjct: 724 TLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKTDAVKLEFVEPAGP 783 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A +G +NE F + G +K Sbjct: 784 CMVYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMR-ENELYFYVADTGCGI-PKDKQQ 841 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V S + L R+ E + L Sbjct: 842 NIFGRFVKLNSFAQGTGLGLSICQTLIERMGGRIGVESEEGKGSTFWFTLP 892 >gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 581 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H++ +P+ AI ELL E + E + R +A Sbjct: 183 LRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAETPLNQEQDEYCRTIRQAA 242 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS------W 104 + LA G +D + + + A K ++++ Sbjct: 243 AALLNLINDILDLAKIEAGKLDLEAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGL 302 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160 S ++L+NL A +GG K F+++ +G Sbjct: 303 PDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISP 362 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DG+ + L ++ S +E Sbjct: 363 HRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIE 421 >gi|315187209|gb|EFU20966.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 632 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 69/242 (28%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L S + A+ L + HD + + + +L+ + D ++ Sbjct: 249 LRERERQLLQSQKMEAVGRLAGGVAHDFNNLLTVLMGYSKLILQGLPADSPLRSDVQEIQ 308 Query: 59 S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGE 107 L F R VD L ++E+++ + D + ++ + Sbjct: 309 RATLRSSHLIRQLLLFSRHQVAQPEVVDLNELLREMERLLRRVLREDITLTLSCLAASPR 368 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLK 152 + ++++NL + A ++P GG +TI ++ + + Sbjct: 369 VYVDPAQFEQVVVNLAVNARDAMPNGGMLTIQTRNEILREERKGALISVPPGEYVVLDVS 428 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ + + V + + S Sbjct: 429 DTGSGIPPAILPRIFEPFFTTREDEGTGLGLSTVYAVITGAGGFVDVSSTPGRGTTFSLY 488 Query: 213 LE 214 L Sbjct: 489 LP 490 >gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 1045 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA++ S L + + + H+I +P+ AI +L ++ + + + Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + Y L L + V + Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788 Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A G + N F ++ G ++ Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLRDDNTLWFYVEDTGCGIPENKRKD 848 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + K + + ++ L Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898 >gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 1029 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 25/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 AK S + L + + H+I +P+ I ELLDE + L + Sbjct: 789 AKERAEEASRLKSAFL--ANMSHEIRTPLTGILGFAELLDEELETRQQEDLREFTHIIDR 846 Query: 58 ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSW 104 + + L+ ++ + D+ V + + + + Sbjct: 847 SARRLLTLLNDILDLSKIEANRLELKLQPTDVVDVARQAVQLMQPLAEEKGLKLELHAEE 906 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L+NL A G Q + +++ G Sbjct: 907 NLTARADPNRLHQVLVNLLSNAIKFTDEGHVRVELGQKKG-WVLLAVEDTGCGISPEFLP 965 Query: 165 T-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L ++ + LL Sbjct: 966 HLFEPFRQEHEGLTQKHQGVGLGLAIVKRLIDLMSGQITVQSEVGRGTRFEILLP 1020 >gi|228967769|ref|ZP_04128785.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791923|gb|EEM39509.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis serovar sotto str. T04001] Length = 484 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + ++ +S G +I+ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTISSDNNKVIVKVIDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|218442002|ref|YP_002380331.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218174730|gb|ACK73463.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1252 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 M + S+ DL + HD+ P+G I + +LL + + + Sbjct: 1018 MEQRQELARSNQDLE-QFAYIVSHDLQEPLGIISSYGQLLHRHCQKQLDPKAETYIDRML 1076 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 S +++ + +L + + + ++ ++ +I+ Sbjct: 1077 NSVKRMRQQIEDLLQYSRIGTRKQTLQLIDSHSVLRQAIANLEIPIKKHNAQIEINSSLP 1136 Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFT 165 + ++ NL A V + + ++ NG + Sbjct: 1137 NLRVDPSQLRQLWQNLISNAIKYHQNIPPVIKINCQRQKDEWLFSIQDNGIGINPRY-YE 1195 Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + I + H + R+ E + Sbjct: 1196 RIFQVFQRLHTQEDYPGTGIGLAICQRIVHRHGGRIWVESELGQGSTFYFTI 1247 >gi|148266231|ref|YP_001232937.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399731|gb|ABQ28364.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 359 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 25/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 ++ ++VA++ HD+ SP+ + ++ L + + L Sbjct: 125 TEDKKEKRQREEIVAMMT----HDLKSPLTVLMGYVQTLKGEMPQKIDISLQPCLKEMDR 180 Query: 62 -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTG 106 + + G + + DI +++ + + + Sbjct: 181 SALKLLAMIEDVLDAYRLEVGLLQINCAVCDIGALLDGCCCDGLREAQARGSNLTCNISE 240 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L + ++ A PR G VT++ + +++ S+K G + Sbjct: 241 GIPPLKVDGKQLSRVFANLIGNALKFTPRRGSVTVTAEVREDKVFVSVKDTGIGIPQKDV 300 Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E ++ S ++ Sbjct: 301 PRIFNKYFRSSAATGFKGTGLGLTISKAIVEAHSGTIEVESVEGEGSCFSVIIP 354 >gi|300118890|ref|ZP_07056603.1| sensor histidine kinase [Bacillus cereus SJ1] gi|298723735|gb|EFI64464.1| sensor histidine kinase [Bacillus cereus SJ1] Length = 484 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKIMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTNIFFSLEK 478 >gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3] gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3] Length = 761 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49 A+ M L + + H+I +P+ AI L++ + + Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++LI + + M F + + Q++ + Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L N A +V + ++ G EK Sbjct: 646 VIVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ D + + ++A + + + L K Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFTLTLPK 757 >gi|255526346|ref|ZP_05393260.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|255509923|gb|EET86249.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] Length = 441 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 66/240 (27%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 K +LS M L + I HD+ +P+ I ++L+L+ + + Sbjct: 168 KEDKLHLSKMKEIDKLRTDFFTNISHDLRTPLNIILSALQLMKSFNNLNCNEEKSFKYFK 227 Query: 52 LIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 I+ +S+ + + + I V + + Sbjct: 228 SIKQNSLRLLKLINNLIDITKIDSGYFEIRTGNYNIVNIVEDITLSVAQYVENKSITLTF 287 Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E+ ++ + K+ + A GG + I++ D + + ++ G Sbjct: 288 DTNTEEKFMACDPDKVERIMLNLISNAIKFTNPGGHIFINMFDEDDYIVICVEDTGIGIP 347 Query: 160 FPEK-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + ++ L Sbjct: 348 EEDLDIIFERFRQSNRASARNYTGSGIGLSLVKSLVEMHGGKISVRSTYGKGTKFVIKLP 407 >gi|239905956|ref|YP_002952695.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795820|dbj|BAH74809.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 560 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 59/231 (25%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIEDEV--------MQLIRL 55 S + AL L + + H++ +P+ I + +LL E I+ + I Sbjct: 328 QSSKMAALGKLAAGVAHEVNNPLAIIMEKAGWMRDLLSEEDIKASPNFQEFADAVAKIEF 387 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKID 110 A + + + + + + + Sbjct: 388 HVRRAKDVTHRLLGFARRMEPTQENLDVNLLLEQTRSFLENEANFRGIAFVRDYQADLPH 447 Query: 111 LSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++ + ++ K + E ++ GN E Sbjct: 448 IESDASQLQQVFLNILDNAIDAIDKNGSITIATRKLPDTPEVEIAIADTGNGI-PRETLE 506 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + R+ + L Sbjct: 507 KIFDPFFTTKKVGEGTGLGLTISYSIIEKLGGRIQVASEEGKGTTFRITLP 557 >gi|224827111|ref|ZP_03700207.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] gi|224600620|gb|EEG06807.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] Length = 713 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 63/217 (29%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNS----LELLDE--------VGIEDEVMQLIRLSSMSAIIRLK 65 + S I H++ P+ AI N L +L++ ++ S Sbjct: 479 MASGIAHELNQPLAAISNYCAASLAMLEDVEEAPAQVTDALKAAIRQAERSGEIIKRLRA 538 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDLSRERAKILLN 121 F+ VD + +G+ + E + + V + S + ++L+N Sbjct: 539 FVSKRSMDVRQVDLNLLVGNSLFLAEHDLRSNGVQVVQMLSANPVTVMADSIQIEQVLMN 598 Query: 122 LFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 L A ++ + + + I ++ +G P+ + + Sbjct: 599 LLSNAIEAMKGEREGARQLVIHSHVALSNAILEVRDSGRGI-SPDVQAVLFHPFYSTREG 657 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E I L Sbjct: 658 GMGLGLSICQTIVEQYGGSIEAENIPGSGACFRLRLP 694 >gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 364 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 27/239 (11%) Query: 2 AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSS 57 K +L + + + + + H++ +P+ I E L + + + + Sbjct: 119 RKRFEQSLQEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTLNPKQKEYLGDIL 178 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111 S L+ + + L + V+ I V +K Sbjct: 179 NSGKHLLQLINDVLDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKHIHVRLTVA 238 Query: 112 ---------SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFP 161 ++ ++L NL GG V I + S+K G + Sbjct: 239 PELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSVKDTGIGIKPE 298 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + L + E S +L Sbjct: 299 DI-QRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGVGSTFSVVLP 356 >gi|218900588|ref|YP_002448999.1| sensor histidine kinase [Bacillus cereus G9842] gi|218541412|gb|ACK93806.1| sensor histidine kinase [Bacillus cereus G9842] Length = 672 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + ++ G PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVHDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|77461028|ref|YP_350535.1| two-component sensor kinase CbrA [Pseudomonas fluorescens Pf0-1] gi|77385031|gb|ABA76544.1| putative two-component system, sensor kinase [Pseudomonas fluorescens Pf0-1] Length = 982 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIR 54 + S L ++ L + + H+I +PI I + L E +D ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGELTEISGQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V Sbjct: 803 RVSRIVQSLMSFAHAGSHQHSDEPVCLAEVAQDAIGLLALNRRNFEVQFYNLCDPDHWVE 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + ++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVKSEAGEHTVDLIVEDEGSGIPSS-IMDRLFE 921 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADVQSQRGTRIRVTLPR 973 >gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 968 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 61/240 (25%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ S+ ++ + + H+I +P+ I L+LL DE + + + S Sbjct: 576 LKQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTTDPNDEQKEYLLGAIRST 635 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104 + + + + + + E I+ + R Sbjct: 636 NRLTRLLSDILDISRIEAGKMQIVESEFDIKMIWDSISELFDMEARGKGLLLEFRWDNIL 695 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159 + +IL NL A +G DS + ++ G Sbjct: 696 PMLLVGDEARLRQILFNLVGNAIKFTEKGKIRIDASLLPRSSDSSVRVLVTVSDTGIGIS 755 Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ + V L + + L Sbjct: 756 EEQLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGTTFYLSLP 815 >gi|228968594|ref|ZP_04129579.1| hypothetical protein bthur0004_53660 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791086|gb|EEM38703.1| hypothetical protein bthur0004_53660 [Bacillus thuringiensis serovar sotto str. T04001] Length = 404 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E ++ + L Sbjct: 178 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 237 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +L + + + ++ +V + E + Sbjct: 238 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 297 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + ++ G PE ++ Sbjct: 298 NEIRQLLMNLYRNGLEAMNTGEVLTISTYKEGQNCVVLAVHDQGKGI-RPEVLEKLGTPF 356 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 357 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 393 >gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 597 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55 M + L + + H++ +PI + E + + + E+ ++I Sbjct: 360 MTEERRL----DKLRKDFVANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 415 Query: 56 SSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------ 104 S+ + + A T +++ + IE++I F + K Q+ Sbjct: 416 ESLRIGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEFKN 475 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + ++L NL A + G V I V+ S + ++ +G+ + Sbjct: 476 EDIQITMDPDRIEQVLTNLIDNAIRHTDKNGMVKIIVERSGDGVTIHVQDSGSGIPEEDL 535 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K + + L Sbjct: 536 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFYLP 591 >gi|162455389|ref|YP_001617756.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161165971|emb|CAN97276.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 506 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 70/231 (30%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SM 58 A L + HD+ +P+ A+ S+ L++ G E ++ Sbjct: 276 ESLERQREAQFAFL-GGVAHDLRNPLSALRLSVGFLNDGGPPSEPRVQRTMALVGRQVDR 334 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KI 109 + + + +D + D+ +++++ + + V + Sbjct: 335 LERMVGDLLDASQIEACKLDLRVEERDLRELVQEAAELYRPVSPEHPIDLSLPEAPVLVR 394 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L NL A P GG++ ++V +++ G + + + Sbjct: 395 CDATRIQQVLNNLLSNALKYSPAGGQIDVAVHGGAGRAEIAVRDRGVGIEAADL-AHLFE 453 Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + RLL E V L + Sbjct: 454 PFQRLKASAGAIPGTGLGLAVAKRIVEAHGGRLLVESEPGAGSVFRVELPR 504 >gi|154684869|ref|YP_001420030.1| YclK [Bacillus amyloliquefaciens FZB42] gi|126363009|emb|CAM35824.1| hypothetical protein YclK [Bacillus amyloliquefaciens FZB42] gi|154350720|gb|ABS72799.1| YclK [Bacillus amyloliquefaciens FZB42] Length = 476 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MAKN+ + + + H++ +P+ I+ +E L+ +++ L Sbjct: 231 MAKNLKQSREQIDRLEKRRRQFIADVSHELRTPLTTINGLVEGLNSNTIPEKDKEKCFSL 290 Query: 53 IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + + +K ++ + + + R+Q Sbjct: 291 ISEETKRMLRLVKENLDYEKIRSQQIKLDKLSLPLIEVFEIIKEHLNQQAEEKQNQLRIQ 350 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V + +IL+N+ + +G + K ++ G Sbjct: 351 VEDGVKVFADYDRLIQILVNITKNSIQFTQKGDITLRGYEGYKETV-IEIEDTGIGISKE 409 Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + +V + + V L +K + + + L Sbjct: 410 EIEHIWERFYKADVSRTNTAYGEYGLGLSIVRQLVEMHKGTIDIDSEKGKGTTFTIRLP 468 >gi|315658045|ref|ZP_07910918.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus lugdunensis M23590] gi|315496935|gb|EFU85257.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus lugdunensis M23590] Length = 569 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 60/221 (27%), Gaps = 20/221 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKF 66 +L + + H++ +PI +I E L E +D + +I S + Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKDDVASLDMFLNIILKESNRIESLVMD 398 Query: 67 MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + Y + D Q ++ ++S + A Sbjct: 399 LLDLSHIEQQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDIIFKANKNKIA 458 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ NL A +V + V +++ ++ G E F + + Sbjct: 459 QVITNLLSNAINYSLENNRVIVRVYRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKA 518 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + Sbjct: 519 RSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVT 559 >gi|289550551|ref|YP_003471455.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis HKU09-01] gi|289180083|gb|ADC87328.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis HKU09-01] Length = 543 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 60/221 (27%), Gaps = 20/221 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKF 66 +L + + H++ +PI +I E L E +D + +I S + Sbjct: 313 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKDDVASLDMFLNIILKESNRIESLVMD 372 Query: 67 MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + Y + D Q ++ ++S + A Sbjct: 373 LLDLSHIEQQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDIIFKANKNKIA 432 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ NL A +V + V +++ ++ G E F + + Sbjct: 433 QVITNLLSNAINYSLENNRVIVRVYRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKA 492 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + Sbjct: 493 RSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVT 533 >gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase [Methanococcus voltae A3] gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase [Methanococcus voltae A3] Length = 654 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 67/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 ++K+ +L + L + H++ +P+ ++ +EL+ + + + + + Sbjct: 395 LSKSYDELKELDNLKSDLIAIASHELRTPLTSVKGYVELVLDGTMGEVNEAQSKCLSIAN 454 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108 + + M + +V D + + + + Sbjct: 455 DNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVDEVFENLKPLFDEKNIRLVKDVQ 514 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 +++ NL A P G++ + + + ++ +G + Sbjct: 515 NLSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLGAYEDEGNIHLIVQDHGAGIPEKDLE 574 Query: 163 -KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + S + + ++ + E +L Sbjct: 575 KIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEGIIWVESELGKGSTFHVILP 629 >gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 1045 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA++ S L + + + H+I +P+ AI +L ++ + + + Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + Y L L + V + Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788 Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A G N F ++ G ++ Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFYVEDTGCGIPENKRKD 848 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + K + + ++ L Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898 >gi|328954651|ref|YP_004371984.1| integral membrane sensor signal transduction histidine kinase [Coriobacterium glomerans PW2] gi|328454975|gb|AEB06169.1| integral membrane sensor signal transduction histidine kinase [Coriobacterium glomerans PW2] Length = 544 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 77/237 (32%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA ++ +L L S + H++ +P+ A+ ++E + + +DE ++ + + Sbjct: 299 MATSLENDLKHER---RLTSDVAHELRTPLMAMLATVEAMQDGVLPADDEHLETVASETR 355 Query: 59 SAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------ 105 + + L+ + I DI ++ +A +++ V+ Sbjct: 356 RLSRLVQQMLDLSRMEMRTSKLNIERVDIIPFVQAIVASQQQLFVARDLRLRFADETQGR 415 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++NL A P GG V +SV+ + + S+K G + Sbjct: 416 SVCIEMDPDMITQAIINLLSNAMRYTPEGGWVVVSVRSERRFVMISVKDTGIGIAKEDLS 475 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + E + + L + Sbjct: 476 -RIFSRFWRADASRAREAGGLGVGLAVTKQSIERHHGYISVESELEKGTTFTIHLPR 531 >gi|258516939|ref|YP_003193161.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] gi|257780644|gb|ACV64538.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] Length = 908 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 13/222 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + I L ++L+ + + I H+I +P+ + L+++ E + Q L Sbjct: 679 LEQEIA-RLDRLNLIGEMAAGIGHEIRNPMTTVRGFLQMMAEKNDCLKYKQYYDLMIEEL 737 Query: 61 II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 K + L L + Q + + + Sbjct: 738 DRANSIITEYLSLAKNKCVNLKIQSLNQILDVLYPLIQATAMREDKFIVLSLGDVPNLLL 797 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +E +++LNL ++ GGK+ I + ++ G+ PE ++ Sbjct: 798 DEKEIRQLILNLSRNGLEAMSPGGKLIIKTMTCSGKVALVVQDEGSGI-RPEIIKKLGTP 856 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + +A+ +K L E + S Sbjct: 857 FFTTKNNGTGLGLSVCYSIANRHKATLKVESN-NMGTTFSVW 897 >gi|228944402|ref|ZP_04106775.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815304|gb|EEM61552.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 462 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVMSEVDHGSCFIISLP 454 >gi|212559138|gb|ACJ31592.1| Sensor histidine kinase [Shewanella piezotolerans WP3] Length = 696 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + + + L AL L + I H+I +P I ++ELL + D V + I L Sbjct: 438 LNETRQQLVINEKLTALGELTAGIAHEINNPTAVILGNMELLKYELGDNADVVEEEIELV 497 Query: 57 SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104 +R Y+ + ++ ++ I + V +++ Sbjct: 498 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIQKQEVVLNQELNA 557 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159 + + ++L+N+ + A ++ G++ I D ++ G Sbjct: 558 SYPIQVNRPQLLQVLINIVVNAAHAIDDKGRIWIRTYDWVQRGEPIGVKIEIEDEGKGIP 617 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I D + D + + + + + L Sbjct: 618 EEELN-RIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIDVTSTVGKGSMFTIGL 670 >gi|156743104|ref|YP_001433233.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus castenholzii DSM 13941] gi|156234432|gb|ABU59215.1| signal transduction histidine kinase, nitrogen specific, NtrB [Roseiflexus castenholzii DSM 13941] Length = 681 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 23/231 (9%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L A L + + H+I +P+ +I N L LL G + + L S Sbjct: 448 EAIMRQNERLAASSRLAAIVAHEINTPLQSIQNYLYLLRAHGAAQSG-EFLDLVSDEICR 506 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----------- 111 +R D I L D +IE + + Sbjct: 507 VSGLLRRLLDLHRPGDGAIELIDCNALIERVLLLLGGTLAGSGIRVERSLTTPLPPVSGG 566 Query: 112 SRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++LLNL + A ++P + Q ++ G P+ Sbjct: 567 RDALTQVLLNLLINAIDAMPCGGTLRIATRHSLETIDQSPVACVQIMVEDTGPGI-MPDL 625 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ L + L Sbjct: 626 QERIFDPFFTTKPHGSGLGLTVSRQIVEQHGGMLRLQSGSGGGATFIVTLP 676 >gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 721 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 54/234 (23%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+N+ + + + H++ +P+ I ++L+ E + S + Sbjct: 252 ARNLAEAANRAK--GEFLANMSHELRTPLNGILGYAQILERDAALSERQRERASSIRHSG 309 Query: 62 IRLKFMRLAFGYTGSVDSLIGL-----------------GDIEQVIEDFIAVDKRVQVSW 104 L + +++ + + + + Sbjct: 310 EHLLTLIEDTLDFARIEAGKLRVEIGDVPLAGFVDVIRDIIDVKAEQKRLDFICEITGDA 369 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R +++LNL A G + N F ++ G + Sbjct: 370 PVGVRADERRLRQVMLNLLANAVKFTDSGCVTLHISRSESNRVRFEVRDTGIGIGHDQLN 429 Query: 165 TQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T G E + + E L Sbjct: 430 TIFEPFEQLGAAERRAGGAGLGLAISREFVRAMGGEIEVESRIGQGSTFRFELP 483 >gi|308067145|ref|YP_003868750.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305856424|gb|ADM68212.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 496 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 64/233 (27%), Gaps = 27/233 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 + + + + H++ +P+ +IH LE+L + ++ + Sbjct: 266 ERELQMQMRR------FIADASHELRTPLTSIHGFLEVLLRGAASNPKQLQSALESMYGE 319 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 S + + L + + + L Q++ ++ Sbjct: 320 SKRMNKLVSDLLLLAKLDRTPELKLEDISLDALLLEMKPQLLMLAGTRKVVFDMTAGIRV 379 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQI 167 + + +++LNLF A V + + ++ NG E+ +I Sbjct: 380 LAEGDKIKQVVLNLFHNAVQHTDMERGVIQVNLSAGKKLVDIQIRDNGPGM-SKEQLERI 438 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E V L Sbjct: 439 FERFYRGDESRTRSSGGAGLGLAITQSIVEAHGGNITAESTPGTGSVFKVTLP 491 >gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 1045 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA++ S L + + + H+I +P+ AI +L ++ + + + Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + Y L L + V + Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788 Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A G + N F ++ G ++ Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKD 848 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + K + + ++ L Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898 >gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 1045 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA++ S L + + + H+I +P+ AI +L ++ + + + Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + Y L L + V + Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788 Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A G + N F ++ G ++ Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKD 848 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + K + + ++ L Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 67/246 (27%), Gaps = 35/246 (14%) Query: 2 AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDE 48 N +L++ +L L S + H++ +P+ AI E L E + + Sbjct: 1304 ESNERISLANAELARATRLKDEFLAS-MSHELRTPLNAILGLAEALQEEVYGSLTPKQHK 1362 Query: 49 VMQLIRLSSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + I S + + + + + SV + E + ++ + Sbjct: 1363 SLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLTFIKQQAQQKNIR 1422 Query: 104 WTGEKID-------LSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKIN 154 R ++L+NL A P + ++ + S+ Sbjct: 1423 LEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDPDGEKLQLSVTDT 1482 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G PE ++ V + V + + E Sbjct: 1483 GIGI-APENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSIALESEVGKGSC 1541 Query: 209 LSALLE 214 + L Sbjct: 1542 FTVNLP 1547 >gi|56420224|ref|YP_147542.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56380066|dbj|BAD75974.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 457 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 + + +L+ + + + I H++ +P+ + ++ + +E + Sbjct: 223 QTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLSEEQRANYMAIIYEEA 282 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTG 106 + +L L + + + + Q + Sbjct: 283 EKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSV 342 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + ++++N+ A G V ++V K + ++ G + Sbjct: 343 MAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRI 402 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + L Sbjct: 403 FERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTILITLP 455 >gi|15614826|ref|NP_243129.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10174882|dbj|BAB05982.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 473 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMS 59 MA + S + L S I H++ +P+ I LL G+ ++ + Sbjct: 228 MASRLKQLTESRN---ELISNISHELRTPLTYIKAYAALLKKREGLTEDGKDQAMIIHEE 284 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SW 104 AI + + F + + + +E + RV Sbjct: 285 AIRMERLVGDLFELMKLEERNVSFHLTKTDLEAVVERSVRVSTIEGKKKNVTLAIHKEHS 344 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161 + S +++ NL A P G + +++ +N+ S+ NG P Sbjct: 345 PLFSLVDSGRLEQVMQNLLSNAIRHTPSNGTINLTLYAEDRKNVISVSDNGEGIDSDKLP 404 Query: 162 EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L + + + + + K Sbjct: 405 FIWDRFYRADRSRNSKYGGTGLGLAITKQLVEQMGGTIFVDSEKGKGTTFTLIFAK 460 >gi|226364244|ref|YP_002782026.1| two-component histidine kinase PhoR [Rhodococcus opacus B4] gi|226242733|dbj|BAH53081.1| two-component histidine kinase PhoR [Rhodococcus opacus B4] Length = 488 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 64/232 (27%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59 A S + + H++ +P+ I EL + + D M I + Sbjct: 256 ASEESARRSEEKMR-RFVADASHELRTPLTTIRGFAELYRQGAMTDTETLMNRIEGEASR 314 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108 + ++ + + D+ V D + + V T E Sbjct: 315 MGLLVEDLLMLARLDAQRPLETRPVDLLSVASDAVHGARAVAPERSITLDVRPGPGTPEV 374 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 I ++L NL A P VT+ + +++ + + G + F Sbjct: 375 IGDEARLRQVLGNLLANAVKHTPATADVTVRLGTTEHSVVLEVADTGPGLTEEDAARVFE 434 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V L ++ + + L + Sbjct: 435 RFYRTDASRTRESGGSGLGLSIVAALVAAHRGAVTVDSRPGEGATFRVELPR 486 >gi|160885771|ref|ZP_02066774.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483] gi|156108584|gb|EDO10329.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483] Length = 563 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 326 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMICQTEEEEERKEFVKIISSNN 385 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 I+ L+ + +T + + L + VQ+ + Sbjct: 386 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQILFTEKADQ 445 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A P+G + + F +K G +K Sbjct: 446 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 504 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 505 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 557 >gi|154509393|ref|ZP_02045035.1| hypothetical protein ACTODO_01924 [Actinomyces odontolyticus ATCC 17982] gi|153799027|gb|EDN81447.1| hypothetical protein ACTODO_01924 [Actinomyces odontolyticus ATCC 17982] Length = 480 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 50/204 (24%), Gaps = 11/204 (5%) Query: 22 ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRL-----AFGYT 74 + H++ +PI + +ELLD + E L+ + + Sbjct: 266 VSHELRTPITVVRGHMELLDPDDHDDVVETRALVIDEIDRMGTLVGDLLELARASDTVNP 325 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 S D + + + + L L A G Sbjct: 326 ASTDLAALTEAVLDKARALGDRQWTLDEAAQVTCCLDPTRITQAWLQLAQNAVQYSADGT 385 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG-NVESTIDSHDIQFYYVILLA 190 + I ++ G + + V G ++ + V +A Sbjct: 386 LIAIGSGADSQWARLWVRDRGIGIAPDDIECVRQRFVRGTAGTESVAGSGLGLNIVESIA 445 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + L E + ++ Sbjct: 446 RAHGGHLDIESTPGVGSTFTLVIP 469 >gi|73662570|ref|YP_301351.1| respiratory response protein SrrB [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495085|dbj|BAE18406.1| staphylococcal respiratory response protein SrrB [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 593 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 59/218 (27%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ + + + Sbjct: 372 ANVSHELRTPISLLQGYTESIVDGIVTEPAEIHESLSIVLDETKRLNRLVNELLNVARMD 431 Query: 74 -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 ++ +D + S ++L NL Sbjct: 432 AEGLTVKKVVQPIDHLLDKVQQKYQKHAKDLGLNMNLSPNTHNQMWYYDSDRIEQVLTNL 491 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177 A G ++ I +++ ENI + G+ + F + + Sbjct: 492 IDNASRYTEPGDEIKIEFGETQTENILYISDTGSGIAPEHLQQVFDRFYKVDTARKRGKQ 551 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ HE+ + + L K Sbjct: 552 GTGLGLFICRMIIHEHGGTIDVKSTLGKGTTFIITLPK 589 >gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium HP15] Length = 902 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 67/255 (26%), Gaps = 42/255 (16%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 A+ + + L + + + H+I +P+ A+ +LL + + + + Sbjct: 539 AERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGYSDLLSNSVTDPQQRNYLDAIRAGS 598 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L MRL + L + I + + V V Sbjct: 599 RSLLMLINDILDLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQGITLEVSVDSRM 658 Query: 107 E--KIDLSRERAKILLNLFMVAHASLPRGGKV------------------TISVQDSKNE 146 + ++L NL A GG + + + Sbjct: 659 PGAMMLDETRLRQVLFNLVGNAIKFTHDGGVTVRATAKPLKKRSAEAEQNPEAPERQYYK 718 Query: 147 NIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPE 200 I ++ +G P++ +I D + LA L E Sbjct: 719 LIVTVSDSGIGI-PPDQVERIFDAFEQQEGQNTRRYGGTGLGLAISRKLARMMGGELEVE 777 Query: 201 IIDDHNVVLSALLEK 215 V + L + Sbjct: 778 SEQGSGSVFTVTLPR 792 >gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 543 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 + + S L + + + H+I +P+ AI LL ++ + E ++ Sbjct: 308 LNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIE 367 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------- 104 L F+ ++S ++ + + D Sbjct: 368 KNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVKPGVELIADLPA 427 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 +++ NL A RG + + + ++ G Sbjct: 428 EDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMSEEVI 487 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ S + + + + E L Sbjct: 488 AHVFERFYKGD--SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVCLP 539 >gi|261419125|ref|YP_003252807.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319765942|ref|YP_004131443.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261375582|gb|ACX78325.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317110808|gb|ADU93300.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 354 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 20/231 (8%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 ++ NL + ++ S + H+I SP+ +I L + +I + Sbjct: 118 DMAANLQAMEEMRQEFISNVSHEIGSPLTSIRGFARALKNENLSREQRMHYLDIIETECV 177 Query: 59 SAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + +D+ + + + + Sbjct: 178 RMSKLSENLLRLAMLDSDRHPFHPTSYRLDTQLQTLILHCEPQWAEKELDMCVMLEKVVI 237 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 +++ LNL A P+GG +TI +Q + I + G + F Sbjct: 238 TAYEDLLSQVWLNLIHNAIKFTPKGGTITIQLQRRGEQAIITFSDTGPGISEHDQPRIFE 297 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L Sbjct: 298 RFYKADKSRHRAAGGSGLGLSIAKKIVDIHHGTISVQSQPGEGATFIVELP 348 >gi|218709488|ref|YP_002417109.1| putative sensor histidine kinase [Vibrio splendidus LGP32] gi|218322507|emb|CAV18666.1| putative sensor histidine kinase [Vibrio splendidus LGP32] Length = 675 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + + + L AL L + I H+I +P I ++EL+ + Sbjct: 430 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVARVDEEVHAI 489 Query: 50 MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 M+ I L++ R + + + + + Q++ Sbjct: 490 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKKGIVYVSQLNA 549 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M A ++ G + I ++ G Sbjct: 550 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGVSHGAIVHVEDEGCGI- 608 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I + D + + + + E S L+ Sbjct: 609 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIRVESEVGKGSRFSIYLQ 663 >gi|70726234|ref|YP_253148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus haemolyticus JCSC1435] gi|68446958|dbj|BAE04542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus haemolyticus JCSC1435] Length = 565 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 58/220 (26%), Gaps = 20/220 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 +L + + H++ +PI +I E L ++ D + +I S + Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEESLDMFLNIILKESNRIESLVMD 398 Query: 67 MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + D Q + + ++ + A Sbjct: 399 LLDLSHIEQQTEIETAFMNLSELAYTTIDNLQNQARYKDIKIVSEIEKDVIIEAHENKIA 458 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ NL A +V + V +E ++ G + F + + Sbjct: 459 QVITNLLSNAINYSLENNEVIVRVYREGHEVNLEIQDFGIGIDKSDQKHIFERFYRVDKA 518 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + E + Sbjct: 519 RSRDSGGTGLGLSITKHIVEAHHGTINVESNIGEGSLFKV 558 >gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1130 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 21/243 (8%), Positives = 61/243 (25%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVA-------LLCSRICHDIISPIGAIHNSLELL------DEVGIEDE 48 + + + +LV L S + H++ +P+ AI +LL E Sbjct: 612 QQRLQIESQNQELVEADRQKNNFLAS-MSHELRTPLNAIIGFSQLLLRNKNLQEQPQVLL 670 Query: 49 VMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + + + + + ++ Y + + + Sbjct: 671 QLDRVYQNGKIQLRLVNDILDLAKIKAGKVELRYQPVALEPFVREVYAALESLALQKNLS 730 Query: 100 VQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V+++ + + ++ L A RG + + + + ++ G Sbjct: 731 VRIAVDPSIGSVETDPQQLRTILINLLSNAFKYTERGEVEVRARRPAADRFELEVRDTGV 790 Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ + G + L + + Sbjct: 791 GIDPDQQQKVFDEFSRLEGAATRQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTV 850 Query: 212 LLE 214 L Sbjct: 851 RLP 853 >gi|89099327|ref|ZP_01172204.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89085936|gb|EAR65060.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 529 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 11/215 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAI 61 + + + + + H+I +P+ I ++++ E + ++ + + Sbjct: 306 EKLKVTGEMAASVAHEIKNPLTVISGFIQMIGEKENDYRQYISIIHSELERMNGIINEFL 365 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILL 120 K L + + + V + G + + + + + Sbjct: 366 YLSKPHTPNMKPQPLEPLLNETALLFESEAHYKNVHLLKDILPGCGTVLCDTGKLKQACI 425 Query: 121 NLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 NL + ++P GG V IS + + E ++ +G E I + Sbjct: 426 NLVQNSIDAMPEGGVVKISCRQTSTGEARILIEDSGCGM-PEELLQNIKKPFFTTKESGT 484 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K RL L Sbjct: 485 GLGLMITEQIIQQHKGRLSITSRMGSGTTAEIHLP 519 >gi|150391006|ref|YP_001321055.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950868|gb|ABR49396.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 467 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 73/230 (31%), Gaps = 19/230 (8%) Query: 5 ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61 + +L L L S I H++ +P+ + + +E + + +E + + + I Sbjct: 238 LATSLEEQKTLRKRLTSDISHELRTPLTILQSHIEAISDGIWEPTEEKLSICKNEVNRLI 297 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L + + + D + + ++ Sbjct: 298 KLVAELQDLTDIEKHQIYLQLENSQISKVIDEVLDGFEYQFKQKQITLEREIQGGINIDI 357 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167 + +I++NL A G V++S+++ K+ ++ NG + F + Sbjct: 358 DQDKMKQIVINLLSNALKFTDHDGTVSVSLKEEKDGVRLTVIDNGIGIENEDIPYVFERF 417 Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ I L ++ + E + + +L + Sbjct: 418 YRSDLSRNRSTGGAGIGLTITKSLVEAHQGMIFVESEKEKGTKFTVILPR 467 >gi|116750533|ref|YP_847220.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116699597|gb|ABK18785.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 733 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 74/245 (30%), Gaps = 32/245 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------- 51 KN+ L + + A+ L I HD + + AI + L+ ++ ++ Sbjct: 349 QKNLEEQLRQAQKMEAVGRLAGGIAHDFNNLLTAITGYADTLESNLKGEDALRKNAEEIR 408 Query: 52 -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R +D + +E+++ I + + + Sbjct: 409 RAAERAAALTSQLLAFSRKQVLRPRVLDLRDVVARMEEMLRRLIGENIALCTAVDEGLWR 468 Query: 111 LSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLK 152 + ++ +I + A ++P+GG+ + + + ++ Sbjct: 469 VKADQGQIEQVIMNLVVNARDAMPQGGRLLIEARNVELDGSYVSRHMAVNPGSYVLLAVS 528 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +G E + + + + + V + ++ + Sbjct: 529 DDGMGM-SSETISHLFEPFYTTKEQGKGTGLGLATVYGIVTQSGGHIWVYSEPGEGTTFK 587 Query: 211 ALLEK 215 L + Sbjct: 588 IYLPR 592 >gi|295402033|ref|ZP_06811994.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294975924|gb|EFG51541.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 456 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 19/215 (8%), Positives = 54/215 (25%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRLAF 71 + I H++ +P+ + ++ + +E + ++ Sbjct: 240 ASISHELRTPLTYVKGYADIARRPNMGEEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQ 299 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFM 124 L L + + D + + + + ++++NL Sbjct: 300 HSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYYCDGSITVHIDQKRFEQVMMNLLD 359 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179 A +G V+I V+ K+ + + G + T Sbjct: 360 NALKYSDQGSIVSIDVRKEKHHIVIIVSDEGRGIPKEDLPHIFERFYRVDKSRSRTSGGT 419 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 420 GLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454 >gi|261419916|ref|YP_003253598.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319766730|ref|YP_004132231.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261376373|gb|ACX79116.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317111596|gb|ADU94088.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 457 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 + + +L+ + + + I H++ +P+ + ++ + +E + Sbjct: 223 QTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLSEEQRANYMAIIYEEA 282 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTG 106 + +L L + + + + Q + Sbjct: 283 EKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSV 342 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + ++++N+ A G V ++V K + ++ G + Sbjct: 343 MAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRI 402 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + L Sbjct: 403 FERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTILITLP 455 >gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 608 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 65/233 (27%), Gaps = 24/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSM 58 + + + H++ +P+ ++ + LE L + + + +Q+ + Sbjct: 368 TEQERIEQER--REFVANVSHELRTPLTSMKSYLEALLDGAVNDSDVAPQFLQVTSNETD 425 Query: 59 SAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 I + + D + E + +R Sbjct: 426 RMIRLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQENIQFRRRLPDVPL 485 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + + ++L N+ A P GG +TI+++ K I S+K G P Sbjct: 486 SVMGDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKERLIVSVKDEGVGIPKENLPHV 545 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + ++ + + + + L Sbjct: 546 FDRFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSSDWGKGTTFFFSLP 598 >gi|158522138|ref|YP_001530008.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510964|gb|ABW67931.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 483 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 69/239 (28%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QL 52 + + S L L L + + H+I +P+ I ++ ++ + + + Sbjct: 245 EALEQLRHSERLATLGRLSAGMAHEIGTPLNVISGRSRMIRSGDLDRDEVVAFSAIIEEQ 304 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EK 108 + + L F R D + + ++ + + V + Sbjct: 305 AQRITKIMQGLLDFARRRKPDKTPQDMETIVKQVLDMLAPAASKARAVFKVIRHGDIPKV 364 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----------ENIFSLKINGNL 157 + + ++L N+ + ++ +GG++ + + + +K G Sbjct: 365 PMDTIQVQQVLTNIVLNGIQAMEKGGQLEVELDVERKSHPEADVAAKAYLSIRIKDEGKG 424 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + D + + + E+ + + + L Sbjct: 425 I-PAEHLQHLFDPFFTTKEVGQGTGLGLSIAYGIIEEHGGWIEVDSTPGQGTCFTVFLP 482 >gi|108763883|ref|YP_632940.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622] gi|4467966|emb|CAB37946.1| histidine kinase PhoR1 [Myxococcus xanthus] gi|108467763|gb|ABF92948.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622] Length = 454 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 21/224 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +PI AI E L + + +++++I S ++ Sbjct: 221 EKVRKDFVANVSHELRTPITAIRGYAETLQGGALNDPVMAPKMVEIIHRQSERLSELVED 280 Query: 67 MRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + D+ D + + V + R Sbjct: 281 LLELSRLESREVSLKLARVTLADAAARAADTVRPKAGGKGQVVSLHVPQDLLAVGDPRAV 340 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--G 170 ++LLNL A P GG+V + + + + +K G F + Sbjct: 341 EQVLLNLLDNAVKYTPAGGRVDVYGEYEQGRCVVRVKDTGVGIEAKHQSRIFERFYRVDK 400 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L + E + + L Sbjct: 401 GRSRDMGGTGLGLAIVKHLLQAMDGEVKVESEPNGGSTFTIFLP 444 >gi|228943228|ref|ZP_04105695.1| hypothetical protein bthur0008_58140 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973131|ref|ZP_04133722.1| hypothetical protein bthur0003_28930 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979667|ref|ZP_04139992.1| hypothetical protein bthur0002_28420 [Bacillus thuringiensis Bt407] gi|228780062|gb|EEM28304.1| hypothetical protein bthur0002_28420 [Bacillus thuringiensis Bt407] gi|228786589|gb|EEM34577.1| hypothetical protein bthur0003_28930 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816436|gb|EEM62594.1| hypothetical protein bthur0008_58140 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940222|gb|AEA16118.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 801 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 17/225 (7%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQSMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795 >gi|182413916|ref|YP_001818982.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177841130|gb|ACB75382.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 395 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 19/236 (8%), Positives = 77/236 (32%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQ 51 + + + + LL + + H++ +P+ ++ L+L++ + ++ Sbjct: 150 KRTTEARIENERTSSILLLAAGVAHELGNPLNSLTIHLQLMERRLKKARTAKDKDVAALE 209 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108 + + RL + F + + + + ++ +++ G + Sbjct: 210 DSVAICRAEVRRLDGIITNFLEAVRPRVPDLVETQLAQVLNEVLRFQQGELADRGIEVEV 269 Query: 109 ---------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++ N+ A ++ GG++ + + NG + Sbjct: 270 ETPADLPLVMADRNQVKQVFFNIMKNAADAMQPGGRLRVRSHADDDNVYLLFGDNGAGIK 329 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + H + V + ++ ++ E + +++ + Sbjct: 330 QEDLI-RLFQPYHTTKAGGHGLGLMIVQRIMRDHGGQIGIESKEGVGTLVTLQFPR 384 >gi|158423290|ref|YP_001524582.1| sensor protein [Azorhizobium caulinodans ORS 571] gi|158330179|dbj|BAF87664.1| sensor protein [Azorhizobium caulinodans ORS 571] Length = 852 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 71/236 (30%), Gaps = 31/236 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S + A+ L + HD + + AI +LL + I+ ++ A Sbjct: 473 QSQKMQAIGQLAGGVAHDFNNVLTAIIGYCDLLLASHRPSDPSFPDIMQIKQNANRAAGL 532 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116 ++ + +I L D+ + + ++ E + Sbjct: 533 VRQLLAFSRRQTLRPQVIQLTDVISDLSMLLRRLIGETITLEVEHGRDLWPVKVDVNQFE 592 Query: 117 KILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFP 161 ++++NL + A ++P GG +T+ ++ + + + G P Sbjct: 593 QVIVNLAVNARDAMPGGGALTLRTRNVTAAETAALGDGTVAPGDYVLVEVVDTGTGI-PP 651 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I + + + V + + +L L + Sbjct: 652 EIMDKIFEPFFSTKEVGKGTGLGLSTVYGIVQQTGGTILATSTPGAGTTFRVFLPR 707 >gi|126731224|ref|ZP_01747031.1| phosphate regulon sensor histidine kinase, putative [Sagittula stellata E-37] gi|126708135|gb|EBA07194.1| phosphate regulon sensor histidine kinase, putative [Sagittula stellata E-37] Length = 345 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 16/226 (7%), Positives = 59/226 (26%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ A+ +E L D+ + + ++ + + + Sbjct: 118 FVANVSHELRTPLTALIGFIETLKGPARDDPVGQARFLSIMESEAARMNRLIGDLLSLSR 177 Query: 73 YTGSVDSLIGLGDI---------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + ++ +S + + + ++ L Sbjct: 178 VEADERVRPTTRIDPAEIARSTLHGLRPIAEEAGVKLDLSVPATPVTIPGDEDQLRQVLT 237 Query: 124 MVAHASLPRGGK----------VTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD- 169 + ++ G+ V + ++ G P + Sbjct: 238 NLLENAIKYSGRGATVTVALNAVEYEPRVRGRGVRLTVSDTGPGIDQIHLPRLTERFYRV 297 Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + ++ RL + + +L Sbjct: 298 DSHRSREMGGTGLGLAIVKHIVNRHRGRLRVDSELGKGTTFTVILP 343 >gi|84385504|ref|ZP_00988535.1| signal transduction histidine kinase [Vibrio splendidus 12B01] gi|84379484|gb|EAP96336.1| signal transduction histidine kinase [Vibrio splendidus 12B01] Length = 675 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49 + + + + L AL L + I H+I +P I ++EL+ + Sbjct: 430 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVARVDEEVHAI 489 Query: 50 MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 M+ I L++ R + + + + + Q+ Sbjct: 490 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKKGIVYVSQLHA 549 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M A ++ G + I ++ G Sbjct: 550 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGVSHGAIVHVQDEGCGI- 608 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I + D + + + + E S L+ Sbjct: 609 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIRVESEVGKGSRFSIYLQ 663 >gi|328954248|ref|YP_004371582.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobacca acetoxidans DSM 11109] gi|328454572|gb|AEB10401.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobacca acetoxidans DSM 11109] Length = 620 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSM 58 +N S ++ + +L I HD + + AI ++ + + + + Sbjct: 240 ENELIRTSKLESIGVLAGGIAHDFNNLLTAILGNIAMASLNADTKPFVLERLAEAEKACL 299 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113 A + + L +GD+ + + V+ Sbjct: 300 RAQNLTRQLLTFSKGEKPRKKLASIGDLLKTSASLMLRSSNVRRQANIPEALWWAEVDEE 359 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARFP 161 + + + +L + A ++P+GG + I ++ +++ G P Sbjct: 360 QIQQAVNHLLINADQAMPQGGVIYIFAENFKIGEASRLPLTPGTYIKITIRDQGVGI-LP 418 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + V + + + E + + L Sbjct: 419 EHLDKVFDPFFTTKRRGSGLGLSTVYTIIKNHDGYITVESTPNGGATFTVYLP 471 >gi|206896389|ref|YP_002246773.1| periplasmic sensor signal transduction histidine kinase, putative [Coprothermobacter proteolyticus DSM 5265] gi|206739006|gb|ACI18084.1| periplasmic sensor signal transduction histidine kinase, putative [Coprothermobacter proteolyticus DSM 5265] Length = 535 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 8/216 (3%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M + + L AL + I H+I +P+ AI +++ + G E Sbjct: 317 MREAMAL---QERLAALGRFSAGIAHEIRNPLTAIRGFSQMILKQG-SPEDKAYAEKILR 372 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 K +R Y + ++ + + ++ + + E + Sbjct: 373 EQERVEKLVRDMLVYARPRTAEKKPINLYEFATQHFGENPQITLDIPKNLVWNLDEEYLL 432 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 + +V +A +V + + + + NG + +I + + Sbjct: 433 QIVSNLVGNAFDAGATQVWVEARREGQNLVLRVANNGTPIPQEDLG-KIFEPFYTTKSTG 491 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V A + + V + Sbjct: 492 TGLGLAIVRSAAEIQGGSISVKQSSGK-TVFEIIFP 526 >gi|116748273|ref|YP_844960.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697337|gb|ABK16525.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 567 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 61/237 (25%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIEDE 48 A + L +++L L + + H+I +P+ I N L+ + V Sbjct: 328 AADQARLLQQDKMISLGRLAASVVHEINNPLAGILNYARLMTKMLGKGMLASESVTKFQG 387 Query: 49 VMQLIRLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVS 103 + L+ L F R + + V + + + R+ Sbjct: 388 YLSLMESELSRCSKIVSNLLSFSRQSTLESAPVKVNELIAKSITLCEHKLSLQNIRIDTV 447 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158 + E + + ++ L + ++ + ++ ++ G Sbjct: 448 LSPENPVIPGDFNQLEQCLINLIFNAMDAMETGGVLTLESALIPAQKIVEIRVRDTGCGI 507 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E V + L Sbjct: 508 AKEDLIYIFDPFFTTKKQGKGLGLGLSTTYGIIDRHHGAVSVESEPGKGTVFTIKLP 564 >gi|331086791|ref|ZP_08335868.1| hypothetical protein HMPREF0987_02171 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409957|gb|EGG89392.1| hypothetical protein HMPREF0987_02171 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 241 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 67/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +N + L+ + S++ H+I +P+ +++SL+L++ + +Q + Sbjct: 15 KQNPEIQILIEKLMKEYEFILSKMSHEIRNPLTLVYSSLQLMEAQHPQLTKIQHWSDTLE 74 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTGE 107 + Y + + + + Sbjct: 75 DVKYICGLLDELSSYNHGEHLNLSVFPFSVFLRHIALSFALSLEQTNIQFCSEIADNLPD 134 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I R+ ++LLNL A ++ G + + V + + I + +G + T I Sbjct: 135 LIGDQRKLQEVLLNLLQNAKDAITENGLIRLKVFCNDHHVIVEITDDGCGLTSEQIPT-I 193 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ L + L Sbjct: 194 FSPFTSYKTNGTGLGLAICKRIIDSHRGTLTVSSKPGSGATFTVSLP 240 >gi|332716522|ref|YP_004443988.1| sensor histidine kinase KdpD [Agrobacterium sp. H13-3] gi|325063207|gb|ADY66897.1| sensor histidine kinase KdpD [Agrobacterium sp. H13-3] Length = 900 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 57/232 (24%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLS 56 + L L + I HD+ +P+ AI S L + + ++ ++ S Sbjct: 658 RARLAAETDRLRTALLTSISHDLKTPLAAILGSAGTLKDFADDIPLEARTELLLTIVEES 717 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------GE 107 + + +G+++ GL + ++ ++ ++ V Sbjct: 718 ERLNRFISNLLDMTRIGSGAMEPNYGLYFVGDMVGTALSRAAKIVVRHEIVLDIPSDLPM 777 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL A P + I + G + Sbjct: 778 LKVDPVLFEQVLFNLIDNAAKYAPEQTVIQIRGWRQGRHVFLCVADEGPGIPPDDTERVF 837 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 D + + E + L Sbjct: 838 DSFYRVRKADHVQAGTGLGLSICKGFIEAMGGSIHAENRSGRTGAQFTISLP 889 >gi|319649813|ref|ZP_08003965.1| hypothetical protein HMPREF1013_00569 [Bacillus sp. 2_A_57_CT2] gi|317398487|gb|EFV79173.1| hypothetical protein HMPREF1013_00569 [Bacillus sp. 2_A_57_CT2] Length = 500 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 12/214 (5%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII--------- 62 ++LV L + H+I +P+ I ++LL E + + Sbjct: 283 LELVGTLAASTAHEIRNPLTGIKGLIQLLSEKYTNTHDQYYFSVINDEISRINEIVSEFL 342 Query: 63 -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILL 120 K + + L + + V +S ++ ++++ +++L Sbjct: 343 ILGKPAAQKMETLDLRNIIKELEPLIFSEANLHNVTFESAISDEPVMVECTKDQMKQVIL 402 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL A S+ GGK+TI + ++ + G+ E +I S Sbjct: 403 NLTKNAFESMEGGGKLTIKLNKMHSKCQLKIADTGSGISEDEI-EKIFHPFYTSKETGTG 461 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + H + + + L Sbjct: 462 LGLVVCRRILHSFGGEIFITSKETKGTHVDIFLP 495 >gi|228903186|ref|ZP_04067320.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL 4222] gi|228856468|gb|EEN00994.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL 4222] Length = 484 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + ++ +S G +I+ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|228910523|ref|ZP_04074337.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL 200] gi|228849087|gb|EEM93927.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL 200] Length = 484 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + ++ +S G +I+ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|229096886|ref|ZP_04227855.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29] gi|228686496|gb|EEL40405.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29] Length = 801 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +T + Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + N+ G E+ + + Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795 >gi|229115874|ref|ZP_04245272.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3] gi|228667617|gb|EEL23061.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3] Length = 801 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +T + Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + N+ G E+ + + Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795 >gi|218903110|ref|YP_002450944.1| sensor histidine kinase [Bacillus cereus AH820] gi|218540075|gb|ACK92473.1| sensor histidine kinase [Bacillus cereus AH820] Length = 253 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 19 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 75 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 76 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 135 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ +G + Sbjct: 136 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 195 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 196 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 248 >gi|218899824|ref|YP_002448235.1| sensor histidine kinase [Bacillus cereus G9842] gi|218544331|gb|ACK96725.1| sensor histidine kinase [Bacillus cereus G9842] Length = 484 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + ++ +S G +I+ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|75760732|ref|ZP_00740755.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491787|gb|EAO54980.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 484 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + + + L + + + ++ +S G +I+ Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478 >gi|262166054|ref|ZP_06033791.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio mimicus VM223] gi|262025770|gb|EEY44438.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio mimicus VM223] Length = 597 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLSTNKPERAEENLTR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103 I + + ++ + S + + + + + +V Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L R + I +Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALDRQAERLVQIRLQISEQQVQIFVDDNGPGIGL- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + + + + + H + L L + Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIISLPR 590 >gi|229097706|ref|ZP_04228661.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29] gi|228685651|gb|EEL39574.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29] Length = 448 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M K+I ++ S + H+ SP+ +I + L + +Q+I Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 S K + L Q + ++ +K + V + I Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ N+F + GG V V++ ++ I S+ NG E + Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGM-EKEGMDR 393 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D ++ + V + +K + + L K Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELPK 448 >gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 1132 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 KN S + +++ H+I +P+ AI ELL E ++ + + + + Sbjct: 743 TKNEALKASQAK--SEFLAQMSHEIRTPMNAIMGMAELLKETRLDVDQKYYVTIFCKAGE 800 Query: 62 IRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WT 105 + + + L+ G V D+++++ D + K + + Sbjct: 801 VLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMMKPRALEKGLNCICEIAPGVS 860 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEK 163 + + ++L+NL + +G K+ + S+ G + Sbjct: 861 PHLMGDPTKLRQVLINLIGNSIKFTNKGQVRLVIGKNPSKKDTLLISITDTGIGIPEDRQ 920 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ + + Sbjct: 921 HMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIWFKSRPGTGTTFFFTIP 976 >gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 761 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49 A+ M L + + H+I +P+ AI L++ + + Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++LI + + M F + + Q++ + Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L N A +V + ++ G EK Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ D + + ++A + + + L K Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFTLTLPK 757 >gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 761 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49 A+ M L + + H+I +P+ AI L++ + + Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++LI + + M F + + Q++ + Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L N A +V + ++ G EK Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ D + + ++A + + + L K Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFTLTLPK 757 >gi|254721310|ref|ZP_05183100.1| sensor histidine kinase [Bacillus anthracis str. A1055] Length = 357 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G+ + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352 >gi|229165353|ref|ZP_04293140.1| hypothetical protein bcere0007_3420 [Bacillus cereus AH621] gi|228618178|gb|EEK75216.1| hypothetical protein bcere0007_3420 [Bacillus cereus AH621] Length = 672 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E I ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEESIYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + ++ +V + E + Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNSIIHDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS N + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGRNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|124265292|ref|YP_001019296.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124258067|gb|ABM93061.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 938 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 69/240 (28%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53 +A + + + + SR+ H++ +P+ I +L+ ++ + Q + Sbjct: 548 LADELSRGMQEAERASRAKSEFLSRVSHELRTPLNGILGFTQLMALDEDHPLAAPQAQRL 607 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106 + L + + + + + + ++ + + S Sbjct: 608 ASVQRAGNRLLNLINDVLEISRIESAEVAVRTLAVDLDAALHASLSLVQSLARGRSITIE 667 Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 R ++L+NL A V +++Q S +++ G Sbjct: 668 PTPPSGLWVSGDERALEQVLVNLLSNAIKYSGEQSPVVLNLQRSDGTVKIAVRDRGVGL- 726 Query: 160 FPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ I+ + LA R+ + + L Sbjct: 727 TAEQQARLFQPFDRLGAERRRIEGSGLGLVIARQLAEAMGGRIDVVSVPGAGSTFTLQLP 786 >gi|310820147|ref|YP_003952505.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309393219|gb|ADO70678.1| sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 798 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 74/240 (30%), Gaps = 28/240 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 A+ + L S + ++ L + + H+I +P+ I ++L E L++ G+ D +R Sbjct: 418 ARRLEMQLQLSERMASVGTLAAGVAHEINNPLAYISSNLAFLSEQLEQEGLSDRQRAEMR 477 Query: 55 LSSMSA-----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F R G V+ + +++ + + ++ + Sbjct: 478 DAVQESLEGTRRVRLIVQDLKAFSRADDESQGPVEVHRVVQGSLRLVRNELEHRAQLTLE 537 Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGN 156 + A++L+NL + A + P + ++ NG Sbjct: 538 LNTVPLVLGNESRLAQVLVNLLVNALQAFPAERPAGDNRIRIVTRTAAERVHVQVEDNGQ 597 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + E L Sbjct: 598 GM-TPEVQRRIFDPFFTTKPVGVGTGLGLSICNTIVQGMGGSIEVESTPGVGSTFRLNLP 656 >gi|295703383|ref|YP_003596458.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294801042|gb|ADF38108.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 527 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 69/222 (31%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 + + L + + I H+I +P+ +++ ++L+ ++ ++ Sbjct: 299 TEKFLRKTDKLSLAGEMAAGIAHEIRNPLTSLNGFIQLIHEDSSRYHSYTTIMLSELNRI 358 Query: 61 IIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + S + E V K + + Sbjct: 359 NSIVGEFLLLAKPHDTVMKKHAFSTILNDVILLYESECVLKNVVVKTQVEAPHTYICCDA 418 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++L+NL A ++P GG++ ++V + +K G T I Sbjct: 419 NQIKQVLINLLKNALEAMPSGGEIHLNVTQHTKDLTIFIKDTGVGI-PSHLLTHIQKPFF 477 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +++K + +S + Sbjct: 478 TTKPSGTGLGLVVIKNILYQHKGTFEIKSTVGEGTSVSLTIP 519 >gi|326316997|ref|YP_004234669.1| integral membrane sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373833|gb|ADX46102.1| integral membrane sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 595 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A + S+ + + I H++ +P+ +IH EL+++ + + L +A Sbjct: 351 LAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQRLEQPSYREAAGLIRSAA 410 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104 + + + + + + + ++KR+ Sbjct: 411 EHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLFAISAAQKGLTLEKRIAPDV 470 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +IL NL A GG F + G + Sbjct: 471 PHMLRCDGLRLKQILNNLLSNALKFTREGGVRLEVDTAEARNLRFRVIDTGPGI-PADLH 529 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + LA RL H + L Sbjct: 530 EVIFEKFSQGGAEVSTQHGGTGLGLALSRGLAELMGGRLTVASETGHGACFTLELP 585 >gi|163940445|ref|YP_001645329.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163862642|gb|ABY43701.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 423 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 76/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 192 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 251 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112 R S+ + I ++ + ++ I + Sbjct: 252 RAQSIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNTINITKEFSEGTIIGNT 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIIRIQDSGVGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L I + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 413 >gi|148976162|ref|ZP_01812905.1| sensor histidine kinase [Vibrionales bacterium SWAT-3] gi|145964557|gb|EDK29811.1| sensor histidine kinase [Vibrionales bacterium SWAT-3] Length = 675 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 67/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEV 49 + + + + L AL L + I H+I +P I ++EL+ + Sbjct: 430 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVSRVEEEVHAI 489 Query: 50 MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 M+ I L++ R + + + + + ++ Sbjct: 490 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKRGMVYVSNLNA 549 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M A ++ G + I ++ G Sbjct: 550 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGISHGAIVHVEDEGCGI- 608 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I + D + + + + E S L+ Sbjct: 609 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQIGGEIRVESEVGKGSRFSIYLQ 663 >gi|47076746|dbj|BAD18291.1| unknown conserved protein [Geobacillus stearothermophilus] Length = 433 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 13/226 (5%) Query: 1 MA-KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--- 56 MA + M+ V L + I H+I +P+ A ++L++E + E + Sbjct: 188 MALRKRIIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAAEKRRQYARIALE 247 Query: 57 --SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109 + I ++ A + L ++E+VI+ + V + Sbjct: 248 ELDRAEAIITDYLTFAKPAPEMPEKLNVKLEVERVIDIIRPLANMSCVDIQASLAPFSVM 307 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + LLN+ A ++P GG + + + + G E+ ++ + Sbjct: 308 GEREKFRQCLLNIMKNAIEAMPNGGTLWVYASLDNGRVLIRIADTGIGM-TKEQLDRLGE 366 Query: 170 GNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + E +S L Sbjct: 367 PYFTTKGVKGTGLGMMVVYRIVESMNGTIRIESEIHKGTTVSIYLP 412 >gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 867 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 62/228 (27%), Gaps = 18/228 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59 L + L + + + H+I +P+ AI +LL + + ++ I ++ Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLDAFSPEEVKQFVETININCTL 695 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107 + + G+ + + ++ + + D +++ Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRIEIPEGEDKL 755 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I S +++ NL A G V + + ++ G+ + Sbjct: 756 VITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSGISEDAQKHIF 815 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + ++ Sbjct: 816 ERFYKEDSFTQGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863 >gi|308068363|ref|YP_003869968.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305857642|gb|ADM69430.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 600 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 61/230 (26%), Gaps = 28/230 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL-- 64 ++ + + + H++ +PI A+ E L + +Q+I S + Sbjct: 366 ENMRSEFVANVSHELKTPIAAVKGFAETLLGGGVKDEETARSFLQIIYDESERLNRLIGD 425 Query: 65 ---------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 K L + L + + + + + + Sbjct: 426 ILELSKIESKRSTLDCSPVHVSSFIESLLEKLNNVAAKKRITLHMDIPDELFMEADEDKL 485 Query: 116 AKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +I LNL + +TI ++ + +F++ G + +I + Sbjct: 486 QQIFLNLLSNGINYTLDGGKVKIKVLTIQRENDTEKVVFTVSDTGIGIPKKDLP-RIFER 544 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + L E + L Sbjct: 545 FYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594 >gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 867 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 62/228 (27%), Gaps = 18/228 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59 L + L + + + H+I +P+ AI +LL + + ++ I ++ Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLDAFSPEEVKQFVETININCTL 695 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107 + + G+ + + ++ + + D +++ Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRIEIPEGEDKL 755 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I S +++ NL A G V + + ++ G+ + Sbjct: 756 VITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSGISEDAQKHIF 815 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + ++ Sbjct: 816 ERFYKEDSFTQGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863 >gi|239905954|ref|YP_002952693.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795818|dbj|BAH74807.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 319 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 68/230 (29%), Gaps = 25/230 (10%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIEDEVMQLIR 54 L S L A+ L S I H+I +P+ I ++L +++ + + + Sbjct: 90 LHSQKLAAIGELSSGIAHEINNPLAIITQEIDLARELYGQDACPAPEDLAEIKDCLDQVG 149 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109 + V L + + + + ++ + Sbjct: 150 KQVARCRQITHKLLNFARKMEPVLQEEALERVIEDMAVLVEREAAGRGVAIRRDYDQSLP 209 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + +++LNL A + P GG +T++ + ++ G PE + Sbjct: 210 PVRTDVPLLRQVILNLLTNALHATPEGGTITLATGRQNGRAVIEVRDTGCGI-PPENLPK 268 Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + L + V + L Sbjct: 269 VFDPFFTTKDPGKGTGLGLSLSHGIVARLGGNLTAQSAVGQGSVFTVSLP 318 >gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492] gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492] Length = 867 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 62/228 (27%), Gaps = 18/228 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59 L + L + + + H+I +P+ AI +LL + + ++ I ++ Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLDAFSPEEVKQFVETININCTL 695 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107 + + G+ + + ++ + + D +++ Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRIEIPEGEDKL 755 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I S +++ NL A G V + + ++ G+ + Sbjct: 756 VITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSGISEDAQKHIF 815 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + ++ Sbjct: 816 ERFYKEDSFTQGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863 >gi|189426456|ref|YP_001953633.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422715|gb|ACD97113.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 473 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 2 AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52 + + L + L V L S I H+I +P+ I +++ L EV L Sbjct: 234 RETLEKRLYEAEHLSRVGQLASGIAHEIRNPLNYISLAIDHLRSEVVEQCPERAGEVTAL 293 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSW 104 + Y + ++ E A ++ Sbjct: 294 ADKIREEVRRANYMVINFMNYGRPLKLRKSEITYSELLERTLSVLYERLAAQQVTIEQRI 353 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLAR 159 + + L + + + A ++P GG + + + K G Sbjct: 354 SPDLPVLLLDPELMRNCITNFITNAAQAMPNGGTIVLEGELDDEPGWVRLGFKDQGCGIA 413 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + +L S L Sbjct: 414 V-EDQEKVFQPYFTTKDVGIGLGLAITERIVKAHGGEILVASSPGEGTTFSVRLP 467 >gi|266623114|ref|ZP_06116049.1| phosphate regulon sensor protein PhoR [Clostridium hathewayi DSM 13479] gi|288865122|gb|EFC97420.1| phosphate regulon sensor protein PhoR [Clostridium hathewayi DSM 13479] Length = 656 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49 + N ++ L A + S I HD+ +P+ ++N LELL + E Sbjct: 414 QRTAQLNSANEQLAASQSALREMISNISHDLKTPLTVLNNYLELLGDETVASSEQERTEY 473 Query: 50 MQLIRLSSMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + + ++ + + + ++ + + + + Sbjct: 474 LGIAYHKNLDLQRLIHNLFEVTRMEGGTVSYRLEWVLALPLMEEAERKYGDLAGGMGLFF 533 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + +L NL A P GG + + ++ + + ++ G Sbjct: 534 TAEADDALKLKIDRNKIWSVLDNLVYNALRHTPEGGSIALGIKRRGDRAVLTVADTGEGI 593 Query: 159 ---RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P F + S + Y V A + E + V + Sbjct: 594 DAGHLPHIFERFYKVSPERGEKDGSSGLGLYIVKTTAEAMGGTVEVESVPGKGTVFTLTF 653 Query: 214 E 214 Sbjct: 654 P 654 >gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] Length = 652 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 60/228 (26%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK M ++ + + H+I +P+ AI E++ E E + + + ++ Sbjct: 287 AKQRAEEADRMK--SVFLANMSHEIRTPLNAIVGFSEIIALTEDEVEKAEYLNIIQKNSN 344 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + F + + + ++ ++ Sbjct: 345 LLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLKMKTGIRLNVMRPDEEIW 404 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L N A + G +T+ ++ + G + Sbjct: 405 IMVDRNRITQVLFNFLSNAIKNT-HEGAITLGLEVCGEWLKVYVTDTGCGIAKEKLPLIF 463 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ E L Sbjct: 464 NRFEKLNDFVQGTGLGLPICQSIVERLGGKISVESEVGVGSTFVMTLP 511 >gi|254424565|ref|ZP_05038283.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192054|gb|EDX87018.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 615 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 61/226 (26%), Gaps = 21/226 (9%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAI 61 L + ++ + H++ +P+ + S++LL E E E++Q + Sbjct: 385 QLDQLKSEFVMTA--SHELRTPLTGMAMSIDLLTETAKTKLSNNEQELLQTAQEDVERLR 442 Query: 62 IRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + T + IE + V + Sbjct: 443 DLVNDLLDLSKIESGKLEVDKTTVDPRQLVEKAIELLKIQSEDKQIEVSSQTASNLPKVE 502 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---RFPEKFTQIV 168 + KI + + +L + + + ++ +G + F + V Sbjct: 503 VDVNKITWVMTNLIANALRYAKETIEVIAKRHGTWISIAVADDGPGIDPAYQTKIFDKFV 562 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + + + H + L Sbjct: 563 QVKTEKDVGGSGLGLAICKEIIKAHGGTIWVDSTPGHGSTFTFTLP 608 >gi|32472620|ref|NP_865614.1| sensor protein atoS [Rhodopirellula baltica SH 1] gi|32443857|emb|CAD73298.1| sensor protein atoS [Rhodopirellula baltica SH 1] Length = 410 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 26/233 (11%) Query: 8 NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAI 61 L L AL L + + H+I +P+ I N+ LL + + LI Sbjct: 170 RLKMEKLAALGELAAGVAHEINNPLAGIRNAFALLKRHLPSNVKHYDKLDLIDGEIERIR 229 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKID-------- 110 M + + + + + + ++ +V+V E + Sbjct: 230 GITHQMFQLYRPSQQKAVVFNVRRCLEELMSLALPMSRKFKVKVELECEALPATKELGVD 289 Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 E +ILLNL A + G +V + V + + + + G + Sbjct: 290 EVLLREGELKQILLNLVHNAIQASSPGQEVQLVVTANDDALVLRVVDRGCGI-ANDVIDS 348 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + L + + + L + Sbjct: 349 IFDPFFSTKTTTVGQGMGLGLSVTRGLIEAMRGSIDVSSEPNEGTEFCVQLPR 401 >gi|28896392|ref|NP_802742.1| two-component sensor histidine kinase [Streptococcus pyogenes SSI-1] gi|28811643|dbj|BAC64575.1| putative two-component sensor histidine kinase [Streptococcus pyogenes SSI-1] Length = 451 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + T L + + R + + + Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+T+ ++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLA-HENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + +L Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQQHHGFIWAKSDYGKGSTFTIVLP 435 >gi|186681893|ref|YP_001865089.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464345|gb|ACC80146.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 477 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 68/237 (28%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ + LS + S + H++ +P+ +H L+ +L + E ++ Sbjct: 235 LAQTLTMLLSRLSQSWKQEREFVSNVSHELRTPLTIVHGYLQSVLRRQNNLTQTQQEALE 294 Query: 52 LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-V 102 + I L+ + + S + ++ + + + +++ Sbjct: 295 TAASEAERTIRLLQDLLDLARADSGYLYFQMKSYVLNDLIEEVVMMAKKYSDRIIKIESK 354 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E ++LLNL A + + ++ I + G + Sbjct: 355 VDRIEVKADYSRLKQVLLNLIDNAIKYSEIDTPIAFKLNQLEDRAIVEVCDRGYGIPLQQ 414 Query: 163 ---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V L + + + L Sbjct: 415 QARIFERFYRVDESRSHTTGGCGLGLSIVKTLVEGMGGSVSVQSKLGEGSTFTISLP 471 >gi|308272467|emb|CBX29071.1| hypothetical protein N47_J00520 [uncultured Desulfobacterium sp.] Length = 479 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 71/233 (30%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDE 48 + N L S + AL + I H++ +PI I + E + + ++ Sbjct: 240 LETNQENLLQSRKMAALGTFTAGIAHELNNPINNISLTAETFLDEYSERLDPEGKEMLND 299 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSW 104 ++ + ++ L F R +D + ++I++ I + Sbjct: 300 IIAQVERANDIVRNLLDFSRTEESSFSDLDIKDVINSTIKLIKNQIKFSGIKLNIIFSPD 359 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK 163 + R ++ LNL + AH ++P G + +S + G PE Sbjct: 360 LLQIKGNLRSLQQVFLNLLINAHQAMPNGGSIEIKAYPESPRFIRIDITDTGPGI-PPES 418 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + L + + S + Sbjct: 419 LEKIFEPFYTTKGIGKGVGLGLSVTYSLIKNHGGNIKVTSEAGRGTTFSIFIP 471 >gi|194289105|ref|YP_002005012.1| sensor histidine kinase in two-component regulatory system wtih kdpe, regulation of potassium translocation [Cupriavidus taiwanensis LMG 19424] gi|193222940|emb|CAQ68945.1| sensor histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Cupriavidus taiwanensis LMG 19424] Length = 952 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 25/239 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQL 52 A+ ++ S L + L + + HD+ +P+ ++ E + G +++ Sbjct: 701 AQQALLSMESERLRSSLLAAVSHDLRTPLTSLIGMAETMQRSGPALTPPLAETVAAMLEQ 760 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLI----GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 R + L +L + +G + + + + + + Sbjct: 761 ARRMRTMVVNLLDMAKLQSREVLTNKEWQSVEELVGSSLAAMREALEHHRVIVADLSQVP 820 Query: 109 IDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163 + ++L NL A P G ++ IS ++E ++ +G + Sbjct: 821 LIECDAVLVERVLCNLLENASKYTPAGTEIRISSAPVEDEIRIVVEDDGPGVPKGKERQI 880 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE-----IIDDH--NVVLSALLEK 215 F + G ES + + + R+ E D L + Sbjct: 881 FEKFTRGERESATAGVGLGLAVCEAIVQAHGGRIWVEAAQRPDRPDGQAGARFVVALPR 939 >gi|187251604|ref|YP_001876086.1| integral membrane sensor signal transduction histidine kinase [Elusimicrobium minutum Pei191] gi|186971764|gb|ACC98749.1| Integral membrane sensor signal transduction histidine kinase [Elusimicrobium minutum Pei191] Length = 604 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 13/227 (5%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + K + L A+ + S I H+I +P+ I NS L+ +E +I Sbjct: 377 LGKATDALVKKERLAAIGEMASIISHEIRNPLAVISNSTHLIRAIVGEENPKLKRQFDII 436 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 A ++ + + + L + I + + +++ ++ + Sbjct: 437 DSEVRQANRIVEEVLGYARDRKQNITRVDLNSYLKDIVTTHPLPQGIRIVQNYDETHPAV 496 Query: 114 ERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + NL A +P GG + I + K + G +I Sbjct: 497 NIDSEEIKQAVRNLITNAFDVMPDGGTLNIGTKAGKKVVCLYVCDEGTGMGEDTLL-RIF 555 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V NK ++ E D L++ Sbjct: 556 TPFFTTKARGTGLGLAVVKKAVSNNKGKMFVESEPDQGTKFKIYLKR 602 >gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 501 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 + + S L + + + H+I +P+ AI LL ++ + E ++ Sbjct: 266 LNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIE 325 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------- 104 L F+ ++S ++ + + D Sbjct: 326 KNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVKPGVELIADLPA 385 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 +++ NL A RG + + + ++ G Sbjct: 386 EDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMSEEVI 445 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ S + + + + E L Sbjct: 446 AHVFERFYKGD--SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVCLP 497 >gi|228964975|ref|ZP_04126077.1| hypothetical protein bthur0004_18170 [Bacillus thuringiensis serovar sotto str. T04001] gi|228794716|gb|EEM42220.1| hypothetical protein bthur0004_18170 [Bacillus thuringiensis serovar sotto str. T04001] Length = 235 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 1 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 57 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 58 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 117 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + + +G + Sbjct: 118 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 177 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 178 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEINVESEEGKGTEFIVRIP 230 >gi|229154087|ref|ZP_04282212.1| hypothetical protein bcere0010_2900 [Bacillus cereus ATCC 4342] gi|228629367|gb|EEK86069.1| hypothetical protein bcere0010_2900 [Bacillus cereus ATCC 4342] Length = 672 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52 + LS+++L+ + + I H+I +P+ + L+LL E ++ + Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 505 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + + ++ +V + E + Sbjct: 506 ANSIITEFLSIGNTEKSDLQMLDVNSIIHDIIPLIKIDTHNQNKYIQVDTNNVPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS + +++ GN PE ++ Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGNGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|158426278|ref|YP_001527570.1| sensor protein fixL [Azorhizobium caulinodans ORS 571] gi|120206|sp|P26489|FIXL_AZOC5 RecName: Full=Sensor protein fixL gi|38705|emb|CAA39979.1| fixL [Azorhizobium caulinodans ORS 571] gi|158333167|dbj|BAF90652.1| sensor protein fixL [Azorhizobium caulinodans ORS 571] Length = 504 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%) Query: 2 AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED 47 +N L + L AL + S + H++ P+ AI N + LLD+ + Sbjct: 253 RQNTEARLQELQAELVHISRLTALGEMASTLAHELNQPLSAIANYIKGSRRLLDDGDPKR 312 Query: 48 EVM---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVD 97 M + + F+ + + + Sbjct: 313 IPMLQGALDKAAEQALRAGQIIRRLRDFVSRGETERRVESLSKLIEEASALALVGAKEHG 372 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSL 151 +V+ + ++ ++ L + +L + + S+ Sbjct: 373 IQVRYQIDTSCDLVLADKVQVQQVLLNLMRNALEAMMDASRRQLLVQTTPAEDDMVTVSV 432 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G+ E Q+ V + + + + R+ E + Sbjct: 433 CDTGHGI-SDEMRAQLFTPFVTTKAQGMGVGLSISRTIIEAHGGRIWAEPNAGGGTIFRF 491 Query: 212 LL 213 L Sbjct: 492 TL 493 >gi|323342106|ref|ZP_08082339.1| alkaline phosphatase synthesis sensor protein PhoR [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464531|gb|EFY09724.1| alkaline phosphatase synthesis sensor protein PhoR [Erysipelothrix rhusiopathiae ATCC 19414] Length = 403 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 22/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 +++ L + + H++ +PI +I +E+L D+ + ++ I + Sbjct: 170 QDVTRILEGEKMQKRFIADASHELRTPIASIKGMVEILNRPEFDDTETLEAFLKQIEKEN 229 Query: 58 MSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ + L GL + + + Sbjct: 230 NRLDHIVEDLLLQSRLKSNTVYLEKTVFNLKQFFDGLIYERRQELHQANIKVVLNCPSNI 289 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 +++ LNLF A G++ I + NG P Sbjct: 290 TVYADQFRLSQVFLNLFNNAINYAEN-GRIKIQCDTDEEYVHIDFMDNGKGMEPDLIPHI 348 Query: 164 FTQIVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + G + + + + + D + L Sbjct: 349 FERFYRGEKDRSRENGGSGLGLAISKSIVEAHGGTINVTSKIDKGTTFTIKL 400 >gi|167035685|ref|YP_001670916.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida GB-1] gi|166862173|gb|ABZ00581.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida GB-1] Length = 991 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 72/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + S + F + + + + V Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A++L+NL A + P G V + + S++ ++ G+ Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPAGSAVRVRSETSEHTVDLIVEDEGSGIPKN 917 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 918 -IQDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976 >gi|302338734|ref|YP_003803940.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635919|gb|ADK81346.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 696 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 72/224 (32%), Gaps = 12/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 + + M+ + L + HD+ + AI +L++ + E + + Sbjct: 471 ERQVMKMQRMESLGFLAGSVAHDLNNIFTAIEGNLDIARHTLPNDEEEVKEALDAALYAY 530 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------WTGEKIDL 111 ++ + + + I + D+ + + V+ + + Sbjct: 531 EKGKRLVRTVLQHTRVKEDMQTKINIRDVLEAADQLAFRASTVKRTTKAPSGFDPFLAGY 590 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ +NLF+ A ++ G++ I + ++ S+ +G QI D Sbjct: 591 PDLLFQLFMNLFINARQAMNNMGELLIELSGDEDTITISVCDDGPGVPERYA-DQIFDKA 649 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + +K +L + L + Sbjct: 650 FSTREEGTGLGLSIVRSIVERHKGTILLDKRYTRGAKFIVTLPR 693 >gi|289937550|ref|YP_003482152.1| multi-sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] gi|289533241|gb|ADD07590.1| multi-sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] Length = 639 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 21/230 (9%), Positives = 50/230 (21%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQ 51 + + ++ A S HD+ P+ + + L+L++ + + Sbjct: 409 EHKLEESNERLEQFAYAAS---HDLQEPLRMVSSYLQLIESRYANELGDDGEEFLEFAID 465 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEK 108 L++ R+ + + + V Sbjct: 466 GADRMREMIDALLEYSRVDTQGDPLEPVDLDRLLEDVQTDLQIQLEESNAIVTTDDLPWI 525 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KF 164 + ++ NL A G S+ G + F Sbjct: 526 KGDDSQLRQVFQNLLSNAIMYSGDGPPEIHVEATYQGRMWEVSVHDEGIGIDPEQQDRVF 585 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + + E S L Sbjct: 586 EVFHRLHGQEEYSGTGIGLALCRRIIERHGGEIWVESEPGEGSTFSFTLP 635 >gi|218778402|ref|YP_002429720.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759786|gb|ACL02252.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 847 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 60/240 (25%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + + M+ + L + HD + + A++ +EL L ++ + Sbjct: 458 REQNRQMQKMEALGRLTGGVAHDFNNLLQAMNGFVELAGMDLPRDHRSRPFLEQTLTAGR 517 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------L 111 A ++ + L + L + + + + Sbjct: 518 RAANLVQQLLLFSRSKDMQFKYMDLNTAVDDLLKMVGRIIGTDIQVQWRPWNSSLTIHAD 577 Query: 112 SRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156 ++L+NL + A ++P S + ++ G Sbjct: 578 PGMMDQVLMNLCVNARDAMPNGGVLTIAASIMEADAPFCANHSWAKQGRYAVLKVRDTGM 637 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + ++ + + L Sbjct: 638 GMDDVTL-DRIFEPFFTTKEEGRGTGLGLATAYGVVQQHGGIISVSSELGRGSEFAIFLP 696 >gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] Length = 941 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 19/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 ++ + + L S + H++ +P+ ++ ELL + + + + I + Sbjct: 574 RDFTKEYEADQMKNELVSTVSHELRTPLASVLGYTELLINRELKPERQKKYLNTIYQEAN 633 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 + + + + + + ++ S + + Sbjct: 634 RLTVLINDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHDIQFVSDADDDMV 693 Query: 117 --------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ NL A P GG +TI + + E S+ G Sbjct: 694 LGDRDKLLQVFQNLIQNAVKYSPAGGNITIKLHSAPKELHVSIIDEGLGVPEEAMPNLFT 753 Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + ++ ++ + +L K Sbjct: 754 KFFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILPK 805 >gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 1129 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 56/237 (23%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I +P+ AI +LEL+ + + ++ S+ Sbjct: 511 LKEARTAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMARAQLPLAERRRLQTVMSSS 570 Query: 61 IIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSW 104 L D L ++ + + ++ + Sbjct: 571 DALLHTINDVLDLSKAESNQMALEAVPFDLRAVLHEVAAIFRALADAKHLRLECVIAAGL 630 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPE 162 + +I+ NL A G ++ G Sbjct: 631 GDGYVGDPARVRQIVSNLVSNAIKFTEHGRVTVEALPAAVPGRGVEIVVRDTGIGIEPDS 690 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + LA + E V +A L Sbjct: 691 MPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMGGDVTVESRPGAGAVFTASLP 747 >gi|317122192|ref|YP_004102195.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] gi|315592172|gb|ADU51468.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] Length = 490 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 56/241 (23%), Gaps = 26/241 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQ 51 MA+ I + + L + + I H++ +P+ I E L + Sbjct: 234 MAERIEALVEELRRSQTLRRSMLATISHELRTPVTVIRGLGEALRDGLVEAGPGAARHAG 293 Query: 52 LIRLSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVD 97 I + + + ++ + Sbjct: 294 QIVAEAERLGRLIDDLFQLAQIETGQLDLRFGRFAAGPWLEERATALETLVRERGAHWAA 353 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + A++L NL A GG VT++ + +G Sbjct: 354 RIDPSLGGVWLEADPHRLAQVLGNLVDNAARHAGPGGHVTLTAAAVAGGVRVEVADDGPG 413 Query: 158 ARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F G + + V L + R+ L Sbjct: 414 IDPADLPRVFEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVASAPGRGARFWFFLP 473 Query: 215 K 215 + Sbjct: 474 R 474 >gi|229114251|ref|ZP_04243672.1| hypothetical protein bcere0017_5530 [Bacillus cereus Rock1-3] gi|228669271|gb|EEL24692.1| hypothetical protein bcere0017_5530 [Bacillus cereus Rock1-3] Length = 463 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 66/219 (30%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVIV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + + Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + ++ D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNIIVTSEVDYGSCFIISLP 454 >gi|254507803|ref|ZP_05119934.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus 16] gi|219549328|gb|EED26322.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus 16] Length = 603 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 65/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIE-DEVMQL 52 + + + + L L + + I H++ +P+ AI + + L E D+ + Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLTKEKFDRVDDNLAR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVS- 103 I + ++ + S D + + V + + Sbjct: 418 ISNLTDRMAKISNQLKSFTRKSDSQDVQLLELAPVIISAKELVTPQIKSHQVTFNINIEG 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161 + + + + ++L+NL A ++ + ++ + + +G Sbjct: 478 LSAKVDINAIQIEQVLINLITNAAQAVEASTERIVNLSYHQNDAVVSVFIDDSGPGIDTT 537 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L + L Sbjct: 538 TA-AHLFEPFFTTKKNGLGLGLSISQQIVQTMNGELSVGQSPLGGARFTLKLP 589 >gi|205375564|ref|ZP_03228352.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4] Length = 606 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 63/218 (28%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ + + LE L E ++ + +++ + + I + + Sbjct: 379 FVANVSHELRTPLTTMRSYLEALAEGAMDDPTIAPQFLKVTQDETERMIRLVNDLLQLSK 438 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILLN 121 Y + ++ + V + +++ N Sbjct: 439 MDSRDYYFNKEWIPFIRFFDGIIDRFEMSKAQHVTFKRELPDEQILVEIDPDKLTQVIDN 498 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P GG VT V + + S+K G F + + + Sbjct: 499 IISNALKYSPDGGTVTFGVDIQEEFIVISIKDQGMGIPKDNLDKIFERFYRVDKARSRQM 558 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 559 GGTGLGLAIAKEMIYTHGGDIWADSKEGEGTTIFFTLP 596 >gi|262053232|ref|ZP_06025383.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus 930918-3] gi|259158871|gb|EEW43964.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus 930918-3] Length = 588 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 61/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 429 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ D + +++ ++L NL Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQDDDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 489 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586 >gi|229133478|ref|ZP_04262305.1| hypothetical protein bcere0014_23970 [Bacillus cereus BDRD-ST196] gi|228649878|gb|EEL05886.1| hypothetical protein bcere0014_23970 [Bacillus cereus BDRD-ST196] Length = 364 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 76/223 (34%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 133 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 192 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112 R ++ + I ++ + ++ I + Sbjct: 193 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNTINITKEFSEGTIIGNT 252 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 253 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIIRIQDSGVGM-SQEQINRFGEPYF 311 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L I + L+ K Sbjct: 312 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 354 >gi|256828818|ref|YP_003157546.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577994|gb|ACU89130.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 450 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 69/218 (31%), Gaps = 14/218 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVMQLIRLS 56 L AL L + + H+I +P+ +I + + + + Sbjct: 228 RQERLAALGTLAAGVAHEIRNPLSSIKGFATYFGAKFKAGTQDRELAEVMIGEVDRLNRV 287 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + L T D + + + + +++++ Sbjct: 288 VTELLELTHPSELRLAPTVVSDLVQHALKLVEGDCRSKGIAVQLRIAELEALPLDPDRML 347 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 +ILLNLF+ A ++P+GG +T+S Q K+ + G+ + +I D + Sbjct: 348 QILLNLFLNAIQAMPQGGTLTVSAQRVKDRLELRVADTGHGIPAQDL-DRIFDPYFTTKN 406 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + ++ + L Sbjct: 407 QGTGLGLATVRTMMTAHGGQVRVTSEPGQGTQVILDLP 444 >gi|221210646|ref|ZP_03583626.1| periplasmic sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221169602|gb|EEE02069.1| periplasmic sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 1017 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 63/244 (25%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + + H+I +P+ I +LELL+ ++ ++ Sbjct: 488 LVQKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSVLDLPQRSRVQT 546 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 +A L+ + +T + + IE IA + Sbjct: 547 LRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLFCE 606 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155 + S + A++ NL A G +++ G Sbjct: 607 IAASASQRMRGDPTRLAQVFGNLLSNAIKFTAHGHVTARVRAVRGECGTAELAIAIEDTG 666 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + L R+ + Sbjct: 667 IGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFT 726 Query: 211 ALLE 214 L Sbjct: 727 VRLP 730 >gi|167464056|ref|ZP_02329145.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384577|ref|ZP_08058257.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150632|gb|EFX44109.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 586 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 K L D+ V L + + H+I +P+ ++ L+L+ G E+ M++++ Sbjct: 325 QKRTEELLRKSDMLSAVGQLAAGVAHEIRNPLTSLKGFLQLIKPSTGKENYYMEIMQDEL 384 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------I 109 + S L + I D + R+ Sbjct: 385 KRIEHIVDEFLFVAKPKVSQFELKSMSAIVSSTVDLLQPQARLNNVEIRTNLNSRLPLVY 444 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++ GG + I G PE+ ++ Sbjct: 445 CNQHQMKQVFINIIKNAMEAMIDGGILHIETDYISALQMVRIRFNDEGCGI-PPERIPKL 503 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + D + LL Sbjct: 504 AEPFYSTKEKGTGLGLMVTYKIIETHSGDIQFRSRPDRGTTVDILLP 550 >gi|119512212|ref|ZP_01631301.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119463110|gb|EAW44058.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 506 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 67/236 (28%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIR 54 + + + L +L S + HD +P+ I ++EL++ G ++ I+ Sbjct: 259 LERALNQERELNHLKSLFISTVSHDFRNPLTVIQTAVELIEIQGDSLTATKKTTYLKRIK 318 Query: 55 LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + S ++ + + ++ + S Sbjct: 319 GAVESMKQLMEDVLFMGRSDVGKVECHPDIINLEQLCREVIAEFSLVTNGGHEIIFTCHS 378 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP 161 + + + IL+NL A P+ + + + + I ++ G Sbjct: 379 KCTDALIDEKLLNYILINLLSNAVKYSPQNQNIHVDLNCDYREQIVILRVQDQGIGIPEV 438 Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + +I + V ++ + + +L Sbjct: 439 DQKRLFESFYRASNVQSIQGTGLGLLIVKRCVEAHQGEISFTSQVGVGTTFTVILP 494 >gi|326405972|gb|ADZ63043.1| Two-component sensor histidine kinase [Lactococcus lactis subsp. lactis CV56] Length = 480 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67 L S + H++ +P+ ++ LE L++ IED+ + L Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLS 289 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112 R+ +I L + + R + Sbjct: 290 RMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDT 349 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166 + A+++ N+ A P+GG +TISV+ +++ + S+ G ++F + Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYR 409 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + S + + V + + + + S L Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458 >gi|281490938|ref|YP_003352918.1| Two-component sensor histidine kinase [Lactococcus lactis subsp. lactis KF147] gi|281374696|gb|ADA64216.1| Two-component sensor histidine kinase [Lactococcus lactis subsp. lactis KF147] Length = 480 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67 L S + H++ +P+ ++ LE L++ IED+ + L Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLS 289 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112 R+ +I L + + R + Sbjct: 290 RMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDT 349 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166 + A+++ N+ A P+GG +TISV+ +++ + S+ G ++F + Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYR 409 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + S + + V + + + + S L Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458 >gi|228920690|ref|ZP_04084033.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838991|gb|EEM84289.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 346 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 112 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 168 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 169 TTRLSKLSQNLLKLTLLESDEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 228 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 229 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVLIRDSGIGISEEQKQHI 288 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 289 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 341 >gi|15672378|ref|NP_266552.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403] gi|12723269|gb|AAK04494.1|AE006276_9 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403] Length = 480 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67 L S + H++ +P+ ++ LE L++ IED+ + L Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLS 289 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112 R+ +I L + + R + Sbjct: 290 RMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDT 349 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166 + A+++ N+ A P+GG +TISV+ +++ + S+ G ++F + Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYR 409 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + S + + V + + + + S L Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458 >gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 523 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 56/231 (24%), Gaps = 23/231 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAII 62 + + S I H++ +P+ I E + + + + +++ S A Sbjct: 285 AQKMEEERQNTFI-SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVISEEADR 343 Query: 63 RLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + +RL + + + Sbjct: 344 LARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDDLPPV 403 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++L NL A P GG + I + + I + G E F Sbjct: 404 YADYERMRQVLTNLIENAVKYSPNGGVIRIGARAEGDMAIVYVSDQGIGIPPEEQDLIFE 463 Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + R+ E + Sbjct: 464 RFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQVGRGSRFFFTIP 514 >gi|294498030|ref|YP_003561730.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294347967|gb|ADE68296.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 527 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 68/222 (30%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 + + L + + I H+I +P+ +++ ++L+ ++ ++ Sbjct: 299 TEKFLRQTDKLSLAGEMAAGIAHEIRNPLTSLNGFIQLIHEDSSRYHSYTTIMLSELNRI 358 Query: 61 IIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + S + E V K + + Sbjct: 359 NSIVGEFLLLAKPHDTVMKKQAFSTILNDVILLYESECILKNVVVKTQVEAPHTYICCDA 418 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++L+NL A ++P GG++ ++V + +K G T I Sbjct: 419 NQIKQVLINLLKNALEAMPSGGEIHLNVTQHTKDLTIFIKDTGVGI-PSHLLTHIQKPFF 477 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +++K + ++ + Sbjct: 478 TTKPSGTGLGLVVIKNILYQHKGTFEIKSTVGKGTSVTLTIP 519 >gi|228927050|ref|ZP_04090116.1| hypothetical protein bthur0010_17660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121536|ref|ZP_04250763.1| hypothetical protein bcere0016_18400 [Bacillus cereus 95/8201] gi|228662000|gb|EEL17613.1| hypothetical protein bcere0016_18400 [Bacillus cereus 95/8201] gi|228832785|gb|EEM78356.1| hypothetical protein bthur0010_17660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 293 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ +G + Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 235 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 236 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288 >gi|225872588|ref|YP_002754043.1| Sensory transduction histidine kinase [Acidobacterium capsulatum ATCC 51196] gi|225792000|gb|ACO32090.1| Sensory transduction histidine kinase [Acidobacterium capsulatum ATCC 51196] Length = 477 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 60/219 (27%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ +I +E L + + E + +I ++ + + Sbjct: 257 FVANVSHELRTPLTSISGYVETLLDTTPDLPPHVQEFLGIILKNANRMNRLTEDLLALAN 316 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 + + + L D + + + + + + ++ N Sbjct: 317 VESGEYQLHRQPIAASALLEDTIEGLAGMLVDSGFLLKQRETTNTKVLVDIDAITQVFGN 376 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A G VT+ +D F ++ G E +I + Sbjct: 377 LIENAMKYGRTGQSVTVGARDCDGCVEFYVQDYGPGI-AQEHQARIFERFYRVDKARSRE 435 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + E L Sbjct: 436 SGGTGLGLAIARHIVLAHEGTIHVESELGSGATFIVRLP 474 >gi|253699328|ref|YP_003020517.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774178|gb|ACT16759.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 770 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 62/242 (25%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--------IR 54 + M+ +A L I HD + + +I E+ + + ++ Sbjct: 382 ERQLRQAQRMEAIATLAGGIAHDFNNNLASIITCTEMARDDVPPESPLRELLDVVLKSSY 441 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDL 111 L F V + + ++ ++ V+ + + Sbjct: 442 RGRKLVKQILTFCCQGEQERQPVQIDPIVTECLNLMRASLSSSISVRTEMGEDLGLIMAD 501 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI----------------SVQDSKNENIFSLKING 155 + +I++NL A ++ G + S ++K G Sbjct: 502 PTQIHQIIMNLVTNAAHAMRHKGGMLDVAVENVGLDTAAVSGSPDLPSGRYLKLTVKDTG 561 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I D + + + V + + + L Sbjct: 562 HGMDQK-TMERIFDPFFTTKSHSEGTGLGLSVVHGIVRNHGGAISVSSKPGGGATFEVYL 620 Query: 214 EK 215 + Sbjct: 621 PR 622 >gi|218780097|ref|YP_002431415.1| response regulator receiver sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761481|gb|ACL03947.1| response regulator receiver sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 407 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 74/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIH---NSLELL--DEVGIEDEVMQL 52 + + + ++ + L +L L + + H+I +P+ I L+LL + E Sbjct: 137 LREALEKQMATAERLASLGTLAAGVAHEINNPLAIISEAAGYLQLLLEKDECKEMPFHDR 196 Query: 53 IR-----------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + L F ++ + ++ + + Sbjct: 197 FEKAIGKIEKSVKRARRTTMQLLGFAGQPDAVYREIELDDLVEEVILLAAGQASAAGVTV 256 Query: 102 VSWTGEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 V ++L+NL A+ RGG+V++S S + +K G+ Sbjct: 257 VKEKNPNSAALWTDPHRLRQVLINLVSNGIAACGRGGRVSLSFDSSNDWATIQVKDTGHG 316 Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I + + + + + + + + + + + Sbjct: 317 I-PKENLERIFEPFFTTKPPGKGTGLGLFVSLDIIKRLGGDMQVKSKVGKGTIFQVSVPR 375 >gi|126699345|ref|YP_001088242.1| two-component sensor histidine kinase [Clostridium difficile 630] gi|115250782|emb|CAJ68606.1| Two-component sensor histidine kinase [Clostridium difficile] Length = 664 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 L ++++ L S + H+I +P+G I N+ LL + ++ ++ I + Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112 A + + + I + + + I ++ Sbjct: 495 ASNIITNLLNFARISDDNLEHINIKNFIENIVKLQYKMLQLKNVEIKIDCEHNLICYING 554 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +NL + ++ + GK+ I + + K NG + I + Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGI-KEDVLKDIFNPFY 613 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y +N + E + Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657 >gi|148656185|ref|YP_001276390.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148568295|gb|ABQ90440.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 504 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 18/213 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRL-------- 69 + + H++ +P+ A+ +LE+L D + + + ++ + Sbjct: 265 ADVSHELRTPLTAMQGNLEVLARGAARDPQLLNESLDDMRREVARLIRMVNDLLLLARSD 324 Query: 70 --AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 V+ L ++ V R+ + LLNL + A Sbjct: 325 AGIQIRRDPVELDTLLLETYRELRLLAGQVHLRIGEEDQAVVTGDRDRIKQALLNLGVNA 384 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI--DSHDI 181 P GG+VT+S+ + S+ G + F + + + + Sbjct: 385 IQHTPPGGEVTLSLTVRDGYAVLSVADTGYGIAPQDLPHIFDRFYRADRSRSRNGGGAGL 444 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + ++L V + LL Sbjct: 445 GLSIVRSVVEAHSGQVLVTSEPGRGSVFTMLLP 477 >gi|89891760|ref|ZP_01203263.1| histidine kinase/response regulator [Flavobacteria bacterium BBFL7] gi|89516095|gb|EAS18759.1| histidine kinase/response regulator [Flavobacteria bacterium BBFL7] Length = 364 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 15/227 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIR 54 K + + ++ + + I H++ +P+ I ELL + D++++ Sbjct: 138 KRQMEHADRLSILGEITAGIAHELNTPLTNILGFAELLKDAFIDNTLVTEDLDKIIKNAM 197 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110 S + F V+ + + + +++ + + Sbjct: 198 FSREVVKKLMFFACEMPQEMQRVNIVPSIKNSLALLDASFKKAQVKYIVKIEEEELFLKA 257 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + +I+ NL + A P G VTI + + I + G E ++ Sbjct: 258 DIIQLTQIIFNLTINAIYFTPVNGVVTIEALQTTDHVILRISDQGIGL-TKEAQKKVFQP 316 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + V + +K + + L K Sbjct: 317 FFTTKPIGDGSGLGLSVVHGIVASHKGTISARNNKFKGATFTVKLPK 363 >gi|89070245|ref|ZP_01157569.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus HTCC2516] gi|89044165|gb|EAR50323.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus HTCC2516] Length = 1053 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-------------LDEVGIEDEV 49 ++I L + + + H++ +P+ ++ +L+L L + I Sbjct: 691 QDISERREIERLKSEFVATVSHELRTPLTSVKGALDLVVGAMADKLPKSSLRLLDIAQSN 750 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + K + +S L D IAV + V + W ++ Sbjct: 751 TDRLIYLVNDILDLEKISAGQIDFHIQPESANELLDASVKQTRPIAVQQDVHLVWRPQEP 810 Query: 110 DLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 D ++LLNL A GG+V + + E +F +K G + Sbjct: 811 DRMVLADAGRLNQVLLNLISNACKFSHAGGRVEVWFEVRGAEVMFFVKDEGVGISATHRN 870 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L R+ E Sbjct: 871 SIFKPFSQVDSSDTREKGGTGLGLNICKELVERMNGRIDFESTLGEGTTFRFTCP 925 >gi|206890887|ref|YP_002248586.1| sensory Transduction Protein Kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742825|gb|ACI21882.1| sensory Transduction Protein Kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 489 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 65/253 (25%), Gaps = 38/253 (15%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL 52 + + + L +L L S I H++ +P+ I S ++L E + ++ +Q Sbjct: 233 LESKQKQLIQAEKLSSLGTLLSGIAHELNNPLSNISTSCQILIEEIEDSDMEYKKELLQA 292 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTG 106 I + A ++ + I + I + V + Sbjct: 293 IESQTERAKNIIRTVLDFSRRKELTKENIPANKLIDDTILLIKGEIPTKVKLSVDIEDNL 352 Query: 107 EKIDLSRERAKILLNLFMVAHASL------------------------PRGGKVTISVQD 142 + ++L+N+ A + GK + Sbjct: 353 SIYADKQRIQQVLINIIKNAIQASGEEGKVSIKAYSYSQEAFDRYFILKEEGKCIGEMPC 412 Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202 +K +K G + + L ++ + + Sbjct: 413 NKEFICIEIKDTGPGIDTANLLRIFEPFFTTKENKGSGLGLFIAQELIKDHNGCICVDST 472 Query: 203 DDHNVVLSALLEK 215 +L + Sbjct: 473 LGKGTTFIIMLPR 485 >gi|116511253|ref|YP_808469.1| Signal transduction histidine kinase [Lactococcus lactis subsp. cremoris SK11] gi|116106907|gb|ABJ72047.1| PAS/PAC sensor signal transduction histidine kinase [Lactococcus lactis subsp. cremoris SK11] Length = 475 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67 L S + H++ +P+ ++ LE L++ I+D+ + L Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIDDKETASSFIGVSLTETNRMIRMISDLLTLS 289 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112 R+ +I L + + R + Sbjct: 290 RMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDT 349 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166 + A+++ N+ A P+GG +TIS++ + + + S+K G ++F + Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISIETRERDVLISIKDEGMGIPKSDLLKIFDRFYR 409 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + S + + V + + + + S L Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458 >gi|332982065|ref|YP_004463506.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699743|gb|AEE96684.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 479 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 75/230 (32%), Gaps = 20/230 (8%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 + L +++ + S + H++ SP+ +I ++ + + + + + ++ + Sbjct: 246 KMAEALENLEDMRRGFVSSVSHELKSPLTSIRGFVQGILDGTIPTEEQTQYLTIVLEETD 305 Query: 59 SAIIR--------LKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + D + + + + + VQ+ + ++ Sbjct: 306 RLNKIIKELLELSRMESSQFQLAMSNFDVNELIRRVLLKQEKRIEQKELDVQIDFEQDRC 365 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + ++ +I L A P G++ +S + N+ S+ +G P Sbjct: 366 MVEADKDRIEEVLINLIDNAIKFTPEKGRLIVSTRVEGNKVYISVSDSGIGISEEDMPHI 425 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + S + V + +++ + + I + L Sbjct: 426 WERFYTADKSRASGSTGLGLSIVKRIIEQHRQSIWVKSIPGKGTTFTFTL 475 >gi|303246771|ref|ZP_07333048.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491788|gb|EFL51668.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 482 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + L L + + + I H+I +P+G I ++ ELL + +L+ Sbjct: 248 REQLERELQQQEKLAGMGRMVAGIAHEIRNPLGIIRSTAELLLKRGKDADSVNAKLLSAI 307 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 + K + Y D+ + + + + Sbjct: 308 FDESKRLSKTVGDFLDYARPKSPRQERVDLAIICDQALTFLEAKCEELGVAVSRDYAPGL 367 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQD------SKNENIFSLKINGNLARF 160 + + N+ A ++ + S+ + S+ +G Sbjct: 368 FVSGDKDLLYRAVYNVLSNALDAMAEDKEKARPPAIAVTATASEEAVVLSVTDSGPG-FC 426 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +++D + + V + + L + + ++ Sbjct: 427 PENKDRLLDPFFTTKDAGTGLGLAIVRTIVESHNANLTLDNAPESGARVTMTFP 480 >gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 806 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K ++ + + + H+I +P+ I L+LL E ++ E + + L S+ Sbjct: 422 LVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKETSLDMEQKEYVDLGIKSS 481 Query: 61 IIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + L + +K + + ++ Sbjct: 482 HRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVNELFAVTTRNKHLSLECIFQEGF 541 Query: 111 LSR------ERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 SR +IL NL A + + D++ + +++ G Sbjct: 542 PSRLVGDEARIQQILFNLVGNALKFTEKGGVQVSWSLYAGDDTEQQVRITVQDTGIGM-E 600 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + V L + + + L Sbjct: 601 QEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLVELMHGNISVKSVPGQGSTFYVDLP 660 >gi|116622005|ref|YP_824161.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225167|gb|ABJ83876.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 411 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS- 57 ++ L++ L +L L + HD + +G+I + ELL ++ + + I + Sbjct: 28 RRDREQGLAAQKLESLGVLAGGVAHDFNNLLGSILANSELLLADLPADAPAREGIDRINA 87 Query: 58 ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 + F V + ++ ++++ I+ ++V Sbjct: 88 VAVRAAEIVRELMTFAGHENPIFEPVSISSLVREMLELLKVSISKLAVIRVDLADGLPAV 147 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKI 153 + + + ++++NL A +L + V D + Sbjct: 148 MANASQIRQVVMNLITNASEALGKAHGVISVSSDMRRVLRDDADTGELAEGEYVRLRVSD 207 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G E +I D + + V + ++ + LL Sbjct: 208 TGCGM-TKEIQDRIFDPFFSTKFSGRGLGLAAVQGIVRSHRGAIQLTSAPGEGTCFEVLL 266 Query: 214 E 214 Sbjct: 267 P 267 >gi|260899517|ref|ZP_05907912.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037] gi|308107606|gb|EFO45146.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037] Length = 573 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+N S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 44 ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 101 Query: 62 IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ L + + + ++ + Sbjct: 102 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 161 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A G + +++ +F + G ++ Sbjct: 162 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 221 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + + L + + + Sbjct: 222 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 276 >gi|163746891|ref|ZP_02154248.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161380005|gb|EDQ04417.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 502 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + ++S + S + H++ +P+ +I SLE+L + + + Sbjct: 252 LKHAQIRAMASDKSKSEFISTVSHELRTPLTSIKGSLEMLKSGKIIDLSGAAERLVGMAA 311 Query: 59 SAIIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKRVQV 102 L + +D + ++ + V Sbjct: 312 KNANILNLLVNDLLDFERIDTGNLEVTKRPSDIVGIVKDEIETMKSYDTEQEVEYFYSGV 371 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 A+I+ NL A P+GGK+ +SV+ + +G + Sbjct: 372 EGPLVAHVDPDRIAQIVRNLLSNAVKFSPKGGKIVVSVRKEAQSVRVDVADSGCGISKVD 431 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + ++ ++ Sbjct: 432 -CVRIFDKFTQVDSSNTRKHRGTGLGLAISKGIVEAHGGDIGVTSVEGAGSEFFFVVP 488 >gi|311694901|gb|ADP97774.1| sensor histidine kinase [marine bacterium HP15] Length = 614 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 65/210 (30%), Gaps = 12/210 (5%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMR 68 + + H+I +P+ I +++ L + + +L+ L + R Sbjct: 395 GQFSAGVAHEIRNPLATIKTTIQALSRKESDPKRQKLMESVDHEIDRVNDVVQLLLDYAR 454 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 V+ + + ++ + + V E + + +++ + + Sbjct: 455 PREAKASKVNIIDVVETVKILADAVAHRHGIELVQVEHESVYAWADSSQVRQIVMNLVMN 514 Query: 129 SLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 ++ +VTI + S+ NG + + + + + Sbjct: 515 AIQAMEGIGGRVTIRTKQQGLAVYVSVSDNGPGVSADHLI-HLTEPFFTTKTNGTGLGLA 573 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 LA N+ L + + + ++ L Sbjct: 574 ICRQLAQANQGNLRFQSVSGEGLKVTLKLP 603 >gi|312110945|ref|YP_003989261.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311216046|gb|ADP74650.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 456 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 56/215 (26%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRL-AFGYT 74 + I H++ +P+ + ++ + + +I + +K + A Sbjct: 240 ASISHELRTPLTYVKGYADIARRSNMGEEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQ 299 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRERAKILLNLFM 124 S L ++ + + + + ++++NL Sbjct: 300 HSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYYCDGSITVHIDQKRFEQVMMNLLD 359 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179 A +G V+I V+ K+ + + G + T Sbjct: 360 NALKYSDQGSIVSIDVRKEKHHIVIIVSDEGRGIPKEDLPHIFERFYRVDKSRSRTSGGT 419 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 420 GLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454 >gi|254478799|ref|ZP_05092166.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035254|gb|EEB75961.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 451 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + S I H++ +P+ + + +E + + E ++ + + I +K + Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWEPTHERLKSLNEEVLRLINIVKDLETLN 291 Query: 72 GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + + + + + + A++ + Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 411 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + + + Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFTVKIP 450 >gi|171912617|ref|ZP_02928087.1| periplasmic sensor signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 409 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 71/243 (29%), Gaps = 30/243 (12%) Query: 1 MAKNICF---NLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----------GI 45 M + L + L + +++ H++ +P+GAI +L+LL Sbjct: 129 MTRRHDAELARLRAERLAQVGTMAAQVAHEVRNPLGAISLNLDLLACEVTELASSAPTPA 188 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + L + ++ Y G + + + Sbjct: 189 THTPHEAHALVDQIRAEVERVEKVVRDYLGFARLPKVMPAPHCLHTFLDEKLALLLPELG 248 Query: 106 GEK--------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 + + ++LLNL + A ++P GG + ++ + S ++ Sbjct: 249 KAHVRLIKSYDPQVRTANIDAVQLWQVLLNLVLNARDAMPAGGVLRVATRQSGTALQITV 308 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G R + + + + + + + E+ L + I + Sbjct: 309 TDTGCGIRKEDLPS-LFTPFFTTKANGTGLGLALSHQIIAEHDGELSCQSIPGSGTTFTI 367 Query: 212 LLE 214 L Sbjct: 368 TLP 370 >gi|156743072|ref|YP_001433201.1| histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234400|gb|ABU59183.1| histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 397 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 + L M L A L + HDI + ++ +LL + L + Sbjct: 154 TQERLHQLEEMRLRATLAAGAAHDIGNLFASVLGHAQLLQQAAPSHLQDDLKTIEQAARD 213 Query: 58 -----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEK 108 + T V + D Q+ F + V+V+ Sbjct: 214 GHYLLRRLLTIRSATHSVEATTSPVLLPTLVHDALQLTRPFWGTRRSVKVNMALAPVPPV 273 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL + +++P GG +T+ + + + G ++ I Sbjct: 274 RGHPADLREVLINLILNGVSAMPEGGTLTVRTYSTGERAVVEISDTGAGIAPAQQNA-IF 332 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + + + L Sbjct: 333 QPFVTNRSTGSGLGLSISRTIVESYGGVISVASTPGRGATFTISLP 378 >gi|320354947|ref|YP_004196286.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123449|gb|ADW18995.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 550 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 77/240 (32%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG--------IED 47 A N L + ++AL + + I H++ +P+ +I + +LL E Sbjct: 311 AANSDMLLQANKMIALSKMAAGIAHEVNNPLASISEKAGWMKDLLAEEDIAASPNFAEFS 370 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 E + I A + + I + ++ + + R + Sbjct: 371 ESIDKIEYHVDRARKIVHNLLGFARRMEPAKEKININNLLDETTGLLENEARYVNILIKK 430 Query: 108 KIDLSR--------ERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNL 157 + + + +++LNL A ++ G +T+ + ++ + + G Sbjct: 431 QYAENVPVITSDLSQIQQVVLNLLNNAIDAIGSDGTITVGSRYLEDTDQVELWVADTGKG 490 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E+ +I + + + + + ++ + + + LL K Sbjct: 491 IPEAEQS-KIFEPFFTTKAVGKGTGLGLSISYSIIEKLGGKMRVQSKVGEGTMFTILLPK 549 >gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] Length = 555 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 67/238 (28%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + ++ + + H+I +P+ I LELL++ ++ + I+ S Sbjct: 165 LRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQTPLDTQQQHYIKSIKTSN 224 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + VD L A D V++++ Sbjct: 225 EHLLTIVNDILDLSKVESGKIRFESIPVDLAQ-LCQDVYQCFLATAKDNSVELTFDYPDN 283 Query: 110 DLSR------ERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFP 161 +IL+NL A P+ GKVTI + ++ F++ G + Sbjct: 284 LPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDKHQIKFNVIDTGVGIKPE 343 Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + LA + + + L Sbjct: 344 SLAVIFDAYNQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKVTSEKNKGSTFTLSLP 401 >gi|229185333|ref|ZP_04312516.1| hypothetical protein bcere0004_28870 [Bacillus cereus BGSC 6E1] gi|228598066|gb|EEK55703.1| hypothetical protein bcere0004_28870 [Bacillus cereus BGSC 6E1] Length = 801 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAIVGQLATVMAHEINNPLTAMKGFMQLLKLTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++++ +S Sbjct: 632 RIESITNEFMAVAKPQMVKIQLNDISVLIDQVLMLLQPQAMMNNIKIRIELKPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPTGGEILIQVNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHRGKVVIESEVNKGTIVEVTLP 795 >gi|220904945|ref|YP_002480257.1| osmosensitive K+ channel signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869244|gb|ACL49579.1| osmosensitive K+ channel signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 961 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 68/233 (29%), Gaps = 22/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------------ 51 +I L A + + HD+ +P+ AI + +L G + + Sbjct: 707 DIAVRAQQEKLRADVLRSVSHDLRTPLTAICGNAAMLAAGGDIEMQRRKSLARAIEEDAR 766 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + + F + + + + + A ++V + Sbjct: 767 YLVEMVENLLALTRLEQYGFTLRLAPELMEDIIREALAVTRRRAAAHNIRVDMADALLMA 826 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL A P G + IS Q + NG EK +I Sbjct: 827 RMDARLMVQVLVNLLDNAVKYTPAGTTIRISAQADGARARLEVADNGPGISAEEKT-RIF 885 Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + + L V S L++ Sbjct: 886 DMFHSAVIKKGDSRRGMGVGLALCRSIVQAHGGDLRVHDNTPRGAVFSLDLQR 938 >gi|254446435|ref|ZP_05059911.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260743|gb|EDY85051.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 438 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 69/230 (30%), Gaps = 19/230 (8%) Query: 3 KNICFNLSS-MDLV--ALLCSRICHDIISPIGAIHNSLELL-----------DEVGIEDE 48 + + + L+ ALL S + H+I SP+ A+ L L ++ Sbjct: 203 QEQELQMQAQEKLMSLALLASGVAHEIRSPLAAMKARLYTLKTEMAQNESAIEDHQAISV 262 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I S + + + + L + + + Sbjct: 263 EIGRIEKIVNSFLQLARPADPEIEIVNTRTLVTTLVNERAKEYQTKGILIKCGKLVDQPV 322 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKF 164 + +IL NLF A ++ G++TI + ++ + G F ++ Sbjct: 323 WADPDQLRQILSNLFQNAKDAISERGEITISSKTTTINATPAVRIDVFDTGKGIPFNQQT 382 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + +L + R+ + S + Sbjct: 383 -RLFDPFYTTKKSGTGLGLPLSQILIGKQGGRIAFRSQEGEGSCFSITIP 431 >gi|182416433|ref|YP_001821499.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177843647|gb|ACB77899.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 841 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 33/244 (13%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS-----LELLDEVGIEDEVMQLIR- 54 ++ L + L +L L I HD + + + LEL + E V Q+ Sbjct: 451 ESERSLLQAQKLDSLRVLAGGIAHDFNNLLTVVLGHATMTRLELAADSPAEKAVHQIELA 510 Query: 55 --LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ L + T +D + + ++ I+ R+Q+ + + Sbjct: 511 ALRAADLCRQMLAYSGRNQLATEPLDLTTIVEETGDLLRVSISKKCRLQLELSRALPPVQ 570 Query: 113 RERAKILLNLFM----------------------VAHASLPRGGKVTISVQDSKNENIFS 150 + ++ + + Sbjct: 571 GDATQLSQIAMNLVINASDASEERGGLILLRTGLCDADATYLADACFVQSPAPGPYVYLE 630 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + +G PE +I + + H + V+ + + + + Sbjct: 631 VTDHGCGM-SPEVRRRIFEPFFTTKFTGHGLGLSAVLGIVRAHGGGIKVDSAPGRGTTFR 689 Query: 211 ALLE 214 LL Sbjct: 690 VLLP 693 >gi|146283612|ref|YP_001173765.1| sensor histidine kinase [Pseudomonas stutzeri A1501] gi|145571817|gb|ABP80923.1| sensor histidine kinase [Pseudomonas stutzeri A1501] Length = 984 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 25/239 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L + I Sbjct: 738 LTETQQLEDRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLRDEREGDGEIVEISA 797 Query: 48 EVMQLIRLSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++++ + S + F + + + V Sbjct: 798 QIIEQTKRVSRIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNRTEVQFLNLC 857 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + A++L+NL A + P GG + ++ ++ +++ G+ E Sbjct: 858 HPDHVAEGDPQRLAQVLINLLSNARDASPPGGVIRVTSDVAEQTVYLTVEDEGSGI-PKE 916 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + V + E+ ++ + D L + Sbjct: 917 IQDRLFEPFFTTKDPGKGTGLGLALVYSIIEEHYGQIDIDSPADPETQRGTRFRITLPR 975 >gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 578 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 20/222 (9%), Positives = 56/222 (25%), Gaps = 25/222 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74 + + + H+I +P+ + ELL ++++ +++ S L + + Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHSELDEKQKSYVKILHQSGESLLGIINDILNISK 257 Query: 75 ----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119 D ++ + + +++ + ++L Sbjct: 258 IEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQIEEDVPRCVVGDPSRLRQVL 317 Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQI-----VDG 170 +N+ +G + F +K G VDG Sbjct: 318 INVVNNGLKFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCIGDIFGLFAQVDG 377 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L + E + + Sbjct: 378 STTRKYGGTGLGLAIAKQLVELMGGAIGVESEPGQGSTFTFI 419 >gi|56420367|ref|YP_147685.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|47076792|dbj|BAD18334.1| two-component sensor histidine kinase [Geobacillus kaustophilus] gi|56380209|dbj|BAD76117.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 434 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 + M+ V L + I H+I +P+ A ++L++E + + + Sbjct: 192 RKRVIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELD 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLS 112 + I ++ A + + L +IE+VI+ + V I Sbjct: 252 RAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGER 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LLN+ A ++P GG + +SV + + G E+ ++ + Sbjct: 312 EKFRQCLLNVMKNAIEAMPNGGTLQVSVSIDSGRVLIRIADTGVGM-TKEQLERLGEPYF 370 Query: 173 EST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + E +S L Sbjct: 371 TTKGVKGTGLGMMVVYRIVESMNGTIRIESEVHKGTTVSIYLP 413 >gi|325663210|ref|ZP_08151660.1| hypothetical protein HMPREF0490_02401 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470664|gb|EGC73894.1| hypothetical protein HMPREF0490_02401 [Lachnospiraceae bacterium 4_1_37FAA] Length = 241 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +N + L+ + S++ H+I +P+ +++SL+L++ + +Q + Sbjct: 15 KQNPEIQILIEKLMKEYEFILSKMSHEIRNPLTLVYSSLQLMEAQHPQLTKIQHWSDTLE 74 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTGE 107 + Y + + + + Sbjct: 75 DVKYICGLLDELSSYNHGEHLNLSVFPFSVFLRHIALSFALSLEQTNIQFCSEIADNLPD 134 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I R+ ++LLNL A ++ G + + + + I + +G + T I Sbjct: 135 LIGDQRKLQEVLLNLLQNAKDAITENGLIRLKAFCNDHHVIVEITDDGCGLTSEQIPT-I 193 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ L + L Sbjct: 194 FSPFTSYKTNGTGLGLAICKRIIDSHRGTLTVSSKPGSGATFTVSLP 240 >gi|229051835|ref|ZP_04195282.1| hypothetical protein bcere0027_57210 [Bacillus cereus AH676] gi|228721513|gb|EEL73010.1| hypothetical protein bcere0027_57210 [Bacillus cereus AH676] Length = 618 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 17/225 (7%), Positives = 58/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 389 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 448 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + + + ++ +S Sbjct: 449 RIESITTEFMAVAKPQVVKMQLNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 508 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 509 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 567 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + + + L Sbjct: 568 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 612 >gi|256828778|ref|YP_003157506.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577954|gb|ACU89090.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 683 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 64/243 (26%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRL 55 M + + + + L + + I H+I P+ AI L LL E + Q+ + Sbjct: 416 MMEKDAQLVQAAKMKTLGEMSAGIAHEINQPLNAIKMGSEYLNLLIEQNRQVTETQIRDM 475 Query: 56 SSM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------- 102 ++ A + +R +G V + + + + + I +Q Sbjct: 476 ATEISQQVDRATDIINNLRAFGKKSGLVMERVDMNEPIRGVLSIIGRQFSIQRITIRLEL 535 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKI 153 + ++ NL A ++ G + + S Sbjct: 536 GEGLPYIKGHNNRLQQVFFNLLNNARDAIQEKMENEPGMWGDILVRTYTQDGRVFASFAD 595 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG +I + + + + + + + Sbjct: 596 NGPGIADS-VRNKIFEPFFTTKQTGKGMGLGLAITYGIVRDYGGIITIDSQPGQGTTFIL 654 Query: 212 LLE 214 Sbjct: 655 SFP 657 >gi|313891038|ref|ZP_07824657.1| sensor protein SrrB family protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120401|gb|EFR43521.1| sensor protein SrrB family protein [Streptococcus pseudoporcinus SPIN 20026] Length = 352 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 76/235 (32%), Gaps = 20/235 (8%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQL 52 +++N+ + +A L S + H++ +P+ ++ +LL + + E++ L Sbjct: 115 LSQNVNQMAQDLKNLAQLRQDFISNVSHELKTPVASLVGLSDLLVDSDLSKEDQAELLAL 174 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ ++ + ++ +K + + + Sbjct: 175 MQSETLRLSRLCDDILNLSRLDRQNQLRIEKVRVDEQIRHSLILLKEKWKEKEIHIDFQA 234 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + + ++ LNL A + +TI +Q+ +N + + G Sbjct: 235 LPLLWGTDPDLSMQVWLNLLDNAIKYSGKQVNLTIIMQEEQNGLSLTFRDKGIGIASDKL 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F Q + + + + V + K +L + +S L + Sbjct: 295 RYIFDQFYQIDHSHSQEGSGLGLAIVKRIVTLLKGQLEVVSQEGEGTQVSLYLPR 349 >gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 630 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 67/236 (28%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54 + + + + + H++ +P+ AI E++ + + E V + Sbjct: 383 EEKIRAEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPKYESYVKDIHN 442 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------- 105 + + ++ G + V ++ ++V V + Sbjct: 443 SGRYLLEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEGNVELSQSGNT 502 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R ++L+NL A P+ GKV++ + ++ G + Sbjct: 503 SISLYGDRRALKQVLINLLSNAVKFTPQDGKVSLRAYRYRGSIRIAIADTGVGIPKHDLG 562 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L + +L + ++ +L Sbjct: 563 -RLGRPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTTVTCILP 617 >gi|322421164|ref|YP_004200387.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127551|gb|ADW15111.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 769 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 55/241 (22%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--------IR 54 + M+ +A L I HD + + +I E+ + + ++ Sbjct: 382 ERQLRQAQRMEAIATLAGGIAHDFNNNLASIITCTEMARDDVPPESPLRELLDVVLKSSY 441 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F V + + ++ I V+ + + + Sbjct: 442 RGRKLVKQILTFCCQGEQERQPVQVESIVTECLNLMRPSIPSSITVRTTLQENPGLIMAD 501 Query: 115 RAKILLNLFMVAHASLPRG------------------GKVTISVQDSKNENIFSLKINGN 156 +I + + + + ++K G+ Sbjct: 502 PTQIHQIIMNLVTNASHAMRLKGGTLEIFLEVVTVGSPSLGAPDLPPGPYLKLTVKDTGH 561 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI D + + + V + + + L Sbjct: 562 GMDPK-TMEQIFDPFFTTKGHNEGTGLGLSVVHGIVRNHGGGITVSSRPGAGATFEVFLP 620 Query: 215 K 215 + Sbjct: 621 R 621 >gi|190894857|ref|YP_001985150.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190700518|gb|ACE94600.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 780 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 49/236 (20%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRL 55 + + L L S H+ +P+ I + + L + E + Sbjct: 531 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLAEKAD 590 Query: 56 SSMSAI--------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S++ S+ +I Q Sbjct: 591 QIRSSVSRMLELMESILAAGRLDHGRITIVPKPCSIAEIIETCSARQESIRRSHRFLLKL 650 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ NLF A P V +S +++ G Sbjct: 651 DELPETIYGDRPALDQVFSNLFSNAVKYAPDSPNVHVSGWQEGERVCITVRDEGIGIDAD 710 Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + + + + + Sbjct: 711 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIP 766 >gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 602 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 57/217 (26%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + + H++ +P+ +I +LL + E + + + + Sbjct: 383 ATVSHELRTPLNSILGFTQLLRRHAGDPERLAVALDAIERNAKAQARLTEDLLDVSRIIT 442 Query: 71 ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLF 123 V + + + + S +++ NL Sbjct: 443 GKLKLTIQPVRVNALVDAAIETMRTAAEAKNIALSAIYPEAPCTLQADSNRLQQVIWNLL 502 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDS 178 A P GG++ +SV+ + ++ +G P F + + T Sbjct: 503 SNAIKFTPVGGRIRVSVERRAGQVHIAVADSGMGIAAEFLPFVFDRFRQADSSSTRTFGG 562 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + + + L Sbjct: 563 LGLGLAIVRHLVELHGGSVEAHSAGPNQGATFVVSLP 599 >gi|108805571|ref|YP_645508.1| histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108766814|gb|ABG05696.1| histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 257 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 61/222 (27%), Gaps = 24/222 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P ++ E L+ + +R + + + Sbjct: 29 FVANVSHELKTPATSLKLLAESLEQAIEEDPEQARLFAAQLRKETERLARLITDLLDLAR 88 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERAKI 118 Y VD + + + KR + + A + Sbjct: 89 LESEERSEYPEIVDLRGVVMSVLARMRRVAREKGIELRWKRFGRASEYTVRGDETQLASM 148 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST 175 L NL A GG+V ++ + E + G P F + + + Sbjct: 149 LTNLVDNAVKYTQPGGRVEVTGGCANGEVFIRVSDTGIGIPPDKLPRIFERFYRVDKARS 208 Query: 176 --IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + R+ E + + L + Sbjct: 209 KATGGTGLGLSIVKHVAENHGGRVTVESVPGEGSTFTVYLPR 250 >gi|320355008|ref|YP_004196347.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320123510|gb|ADW19056.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 730 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 63/221 (28%), Gaps = 17/221 (7%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSSMSAIIRL 64 + M+ + L + I H+ +P+ I +L + + ++QL + Sbjct: 485 IQKMEAIGKLAASIAHEFGNPLLGIRFALRDVQQRAQLEQDDAHLLQLAESECDRMRKLI 544 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKIL 119 + ++ + I + I V + I L ++ Sbjct: 545 RDLQQFNRPSSGRKVEFDPHRILEEIMALHHNLLTKKKITVIRDYEPRPIRLHAVEDQMR 604 Query: 120 LNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 L + + T+ + + E + ++ +G E +I + + Sbjct: 605 QVLINLILNATDAMETAGGTLTLRTRLAGGEVVICVEDSGGGI-AEEHLQRIFEPFFTTK 663 Query: 176 --IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + V + L Sbjct: 664 AAVEGTGLGLAVSYGIVRGHGGDITVQSRPGQ-TVFTVTLP 703 >gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 870 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 18/234 (7%), Positives = 59/234 (25%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + L + L + + + H+I +P+ AI +LL + ++ I Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694 Query: 56 SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + + ++ + + R+ + Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQQLNMPSGVRLVLKLPEN 754 Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + +++ NL A +G ++ ++ G Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAAKFTTQGSITFGYTEEEPGYTSIFVEDTGKGISEDGL 814 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + L Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIIGRLNGVITVTSKEGKGTRFTVRLP 866 >gi|299821889|ref|ZP_07053777.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria grayi DSM 20601] gi|299817554|gb|EFI84790.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria grayi DSM 20601] Length = 591 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 24/227 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRL-K 65 ++ + + H++ +P+ A+ E L + + DE + +++ S + Sbjct: 364 ENVRTEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLGIMKDESDRLHRLILD 423 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTG-----EKIDLSRE 114 + L+ ++ + DI Q I + K + + + + Sbjct: 424 ILALSRIEQHALPINQEVVDIYQTITEAAQTVTESAKQKNIDLVLPHAAKPLPIETDNDK 483 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +I++NL A A P G V + V++S +E +F++ NG E ++ + Sbjct: 484 LKQIIINLVSNAVAYTPENGTVKVDVEESPHEVLFTVADNGIGIPAKEI-ERVFERFYRV 542 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + R+ ++ S L K Sbjct: 543 DKARSRYSGGTGLGLSIVKHLTEQLGGRIEVASVEGEGTTFSIHLPK 589 >gi|220915440|ref|YP_002490744.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953294|gb|ACL63678.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 707 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 26/230 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 M+ V LL I HD + + I ELL + Q R + L Sbjct: 338 QKMEAVGLLAGGIAHDFNNLLTGILGYAELLGEAGTAADEAAAGIRQAARRGAALTRQLL 397 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 F R V+ + ++ ++E + ++ + + ++ + Sbjct: 398 GFARRGKYQQVPVNVHALVREVSALLERTLDKRIAIRHRLAAGSAVVRGDPDQLQQVVLN 457 Query: 125 ---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEKFTQ 166 A ++P GG +T V + ++ G + Sbjct: 458 LAVNARDAMPSGGTLTFEVAEVELDAEGTRARPGLAPGPHVAVTVADTGVGIPAV-VRDR 516 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + V + + + E + + LL Sbjct: 517 VFDPFFTTKPAGQGTGMGLAMVYGIVQNHGGWVGFESEEGKGARFTVLLP 566 >gi|149922527|ref|ZP_01910958.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] gi|149816635|gb|EDM76129.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] Length = 739 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 32/245 (13%) Query: 1 MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + ++ + S+ + AL L S I HD + + I S ELL + E +I Sbjct: 349 LTEDRTREMAQRQSLRMAALGRLASGIAHDFNNVLAGIGFSAELLQARVEDPESQAIIAS 408 Query: 56 SSMSAIIRLKFMRLAFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + S I F++ + +D V+ ++++ Sbjct: 409 IAQSTIRAGHFVKQVLMFARRTERDLAPQLLDEAFADSLAMIARSMPATVELHIELAPRL 468 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSL 151 + + +++ NL A +L G + +++ + S+ Sbjct: 469 CVMADVGQLEQLITNLVTNARQALGGRGGIWVELRERCRDALPESQRPADETERCAVLSV 528 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + +G+ I D + + + V + ++ R+ D Sbjct: 529 RDDGSGIEQGAL-EHIFDPFFTTKPAEEGTGLGLSIVHSIVEAHRGRISVTSQVDVGTEF 587 Query: 210 SALLE 214 + L Sbjct: 588 TVSLP 592 >gi|219849406|ref|YP_002463839.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543665|gb|ACL25403.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 794 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV------MQL 52 ++ S L A+ + I H+ + + + +L L + +E + + Sbjct: 417 QESQSELGRSAKLAAVGTFAASIAHEFNNLLSGMLGYAQLGLTDDDVEMKNEALKVVLDT 476 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R D + ++E + V Sbjct: 477 CKRGRSITGSLLTFARRRDSRRELSDLREVVEGTLTLMEIDLRKHSVRVVRQIEMVPPTI 536 Query: 113 RE---RAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +++ LNL A ++ G +T++++ + + G +I Sbjct: 537 CDAGQISQVFLNLLTNARDAMKPKGGTLTVTLKAEGEWIMLQVADTGCGI-PEAIRRRIF 595 Query: 169 DGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + + R E ++ L Sbjct: 596 QPFVTTKNSTGSQSGTGLGLAVSYGIVQNHNGRFEVESEVGKGTTMTIWLP 646 >gi|319654330|ref|ZP_08008418.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2] gi|317394030|gb|EFV74780.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2] Length = 552 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 71/222 (31%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLS 56 A+ + +V L + + H+I +P+ ++ ++L+ + + + + + Sbjct: 318 AEERLRRTEKLSVVGELSASVAHEIRNPLTSLKGFVQLMQLEDEKHQFYYQIMQEELDRI 377 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDLS 112 + L + D L ++ +++ + + S Sbjct: 378 NHIVGELLLLAKPQDICFTKADVQKILFNVISLLKTEASMHNVQIEFLLKSDVYMIECEP 437 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ +N+ A + GGKVT+++Q + +K NG E+ +I + Sbjct: 438 NQLKQLFINIIKNAIEASSDGGKVTVTLQAEDRQLTILVKDNGCGM-SEERLNRIGEPFY 496 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + L Sbjct: 497 SSKEKGTGLGLTVSFKIVQSHNGSIYFNSKKGKGTEAVIKLP 538 >gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1191 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 21/252 (8%), Positives = 55/252 (21%), Gaps = 38/252 (15%) Query: 2 AKNICFNLSSMDLV-------------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE 48 + S +LV + + I H+I +P+ +I ++L + + Sbjct: 808 QRTQELQRQSEELVIAKEHAESANRIKSEFTANISHEIRTPMNSIMGFADILRDETVNPT 867 Query: 49 VMQLIRLSSMSAIIRLKF----------------MRLAFGYTGSVDSLIGLGDIEQVIED 92 + S L + S ++ E Sbjct: 868 HQHYLDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPRPTNLSSETRDTLRMFQPKLSEK 927 Query: 93 FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENI 148 + ++ + + + ++LLN+ A G Sbjct: 928 ALDLEFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFTDSGKISIRLELVRQYALHAHVR 987 Query: 149 FSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 ++ G + + + + L ++ Sbjct: 988 CAISDTGEGIPENQLQRIFNAFEQASRDFTRSEMGSGLGLAISKRLVEMMDGQIRVVSRV 1047 Query: 204 DHNVVLSALLEK 215 + K Sbjct: 1048 GRGSTFTVDFPK 1059 >gi|196036864|ref|ZP_03104251.1| sensor histidine kinase [Bacillus cereus W] gi|195990517|gb|EDX54498.1| sensor histidine kinase [Bacillus cereus W] Length = 357 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + I +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPIWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ +G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 299 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 300 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352 >gi|313888990|ref|ZP_07822649.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844976|gb|EFR32378.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 556 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 + + ++ L S + H++ +P+ +I ELL ++ E + S Sbjct: 326 DETEEIRALRLREEFSSNVSHELKTPLTSISGFSELLVNNLVEDKDKEGFYKLIYDDSKR 385 Query: 59 S------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDL 111 + VD + ++ + E+ I + V++ G + Sbjct: 386 LLSLVEDIMKISGLENAGDYDKEEVDLREIISEVLKGYENLIEEKNLEVKLEGQGTVFEN 445 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ NL GG++ I + + + + G + +I + Sbjct: 446 RTMIWELFSNLINNGLKYNKEGGRLDIKISEEERAYKIIIADTGIGIPQEDL-ARIFERF 504 Query: 172 V------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + ++ LL K Sbjct: 505 YRVDKSRSRKVGGTGLGLSIVKHILQKIGGKVKISSQLGQGTTFELLLNK 554 >gi|309777925|ref|ZP_07672868.1| sensor histidine kinase [Erysipelotrichaceae bacterium 3_1_53] gi|308914323|gb|EFP60120.1| sensor histidine kinase [Erysipelotrichaceae bacterium 3_1_53] Length = 468 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + S + H++ +P+ I + EL E + + Q Sbjct: 239 MMDRLEKSFQAEK---QFTSDMSHELRTPVSVILSQCELSLEEEQDQQAYQDALHVIKRQ 295 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------------ 108 ++ M ++ ++++ + + EK Sbjct: 296 GQKMSAMINDMLTMTRMEQRTDRIVMKELDFSLLCDTVCQDLCLLHEKGIQLEYRLTKGI 355 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++L+NL A+ G +++ +Q + + S+ NG Sbjct: 356 VVWGNEELLRRLLVNLISNAYRYGKENGHISVVLQKTGENVLLSVSDNGYGIGKEHIDHI 415 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + T + V +A + + E + S L Sbjct: 416 WQRFYQADTSHTHQGSGLGLAMVQEIAQLHGGWMKVESEEGEGSCFSLHLP 466 >gi|303246010|ref|ZP_07332292.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492793|gb|EFL52661.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 403 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 30/234 (12%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50 + + +L + + H++ +P+ AI E L ++ Sbjct: 164 QAEKMATIGMLATGVAHEVNNPLTAIFGFAEGLRRRLPTLRETVDPAVMDDVEDYVTTIL 223 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------S 103 Q R L F R V + D +++ + + ++ Sbjct: 224 QECRRCQDIVTTLLTFSRHKTVSFSPVSLNAVVEDTLKLLRSHLRQRNQAKITVRTELCE 283 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 + +++LNL + A ++ G + I+ + S++ +G E Sbjct: 284 DLPMVSGDEHQIKQVMLNLLVNAMDAIVGPGHIIITTFQEASGAVCLSVEDSGCGV-PKE 342 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + I + + ++++ + + V L Sbjct: 343 NMDKLFEPFFTTKRAGKGIGIGLSTCMTIVNKHQGEITVKSKPGEGSVFIVKLP 396 >gi|295428067|ref|ZP_06820699.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128425|gb|EFG58059.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16] Length = 583 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSLNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|257425614|ref|ZP_05602038.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053] gi|257428275|ref|ZP_05604673.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322] gi|257430912|ref|ZP_05607292.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397] gi|257433601|ref|ZP_05609959.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410] gi|257436514|ref|ZP_05612558.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876] gi|282904071|ref|ZP_06311959.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160] gi|282905898|ref|ZP_06313753.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260] gi|282908808|ref|ZP_06316626.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911127|ref|ZP_06318929.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914296|ref|ZP_06322082.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899] gi|282919265|ref|ZP_06327000.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427] gi|282924590|ref|ZP_06332258.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101] gi|283958253|ref|ZP_06375704.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus A017934/97] gi|293503373|ref|ZP_06667220.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424] gi|293510388|ref|ZP_06669094.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809] gi|293530927|ref|ZP_06671609.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015] gi|257271308|gb|EEV03454.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053] gi|257275116|gb|EEV06603.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322] gi|257278342|gb|EEV08978.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397] gi|257281694|gb|EEV11831.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410] gi|257283865|gb|EEV13988.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876] gi|282313425|gb|EFB43820.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101] gi|282317075|gb|EFB47449.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427] gi|282321477|gb|EFB51802.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899] gi|282324822|gb|EFB55132.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327072|gb|EFB57367.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331190|gb|EFB60704.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260] gi|282595689|gb|EFC00653.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160] gi|283790402|gb|EFC29219.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus A017934/97] gi|290920195|gb|EFD97261.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015] gi|291095039|gb|EFE25304.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424] gi|291466752|gb|EFF09272.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809] Length = 582 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 424 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 483 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580 >gi|271969947|ref|YP_003344143.1| histidine kinase [Streptosporangium roseum DSM 43021] gi|270513122|gb|ACZ91400.1| Histidine kinase [Streptosporangium roseum DSM 43021] Length = 593 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 22/231 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEV 49 + + + S + H++ +P+ + +E + + Sbjct: 359 SEHLERMEAQRKA--MVSDVSHELRTPLSNLRGWMEAAQDGVAELDAELIASLVEEIMLL 416 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ A+ +RL D L + + D + + + Sbjct: 417 QHIVDDLQELALADAGKLRLHPEPVNVADLLDQVATAHRGRADSAGLTLTADTAGDPGLL 476 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + NL A P GG++ + + + + + G PE ++ D Sbjct: 477 ADPVRLRQAVGNLVSNAVHYTPPGGRIALRGRLADGHVLIEVADTGVGI-APEHLPRVFD 535 Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V LA + + V + L Sbjct: 536 RFWREEKSRNRRTGGSGLGLAIVRNLAEAHHGTVSVASTPGEGAVFTLRLP 586 >gi|229018482|ref|ZP_04175344.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273] gi|229024738|ref|ZP_04181177.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272] gi|228736581|gb|EEL87137.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272] gi|228742834|gb|EEL92972.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273] Length = 443 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +A N S+ + S + H+ SP+ +I + L +++ Sbjct: 206 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 265 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105 I S K + L Q + ++ +K + V + Sbjct: 266 IEGESKRMSSLCKQLLTLASLDKEEKVLQMKEFHLQKQIKDVIFMLEWKWREKDIAVEFD 325 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 I ++ + ++ N+F + GG V V+ ++ + S+ NG E Sbjct: 326 VPDIVINGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEKLESSIVISISDNGIGMEKEE 385 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D I+ + V + ++ + + L K Sbjct: 386 -MDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHQGTVSVYSTKGEGTTVRVELPK 443 >gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM 17393] gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM 17393] Length = 390 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 59/232 (25%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + + + + L + S + H+I +P+ AI L+ + G E + + Sbjct: 158 LRELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVGFSRLVIDPGHEGDKEDYCNIIE 217 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------------VS 103 ++ + L + + + + + V Sbjct: 218 KNSELLLCLFNDILDLSEMESGTLEFVREKVNLYHACLEEYDSHRLKVNKGVILILDDVD 277 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L+NL A P G + Q N F +K G Sbjct: 278 EELCVMGDRMRIMQVLMNLLSNAAKFTPTGE-IHFGYQLRGNIVQFYVKDTGIGIPANRV 336 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L R+ + L Sbjct: 337 AKIFERFGKINNFAQGTGLGLTVSRMLVERMGGRIWVRSGEGIGTTFFFTLP 388 >gi|146308603|ref|YP_001189068.1| two-component sensor kinase CbrA [Pseudomonas mendocina ymp] gi|145576804|gb|ABP86336.1| Two-component sensor kinase CbrA [Pseudomonas mendocina ymp] Length = 984 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREERETDAELAEISGQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F D + + + + Sbjct: 805 RVSRIVQSLMSFAHSGGHQHSDEPVCLADVAQDAIGLLSLNKRNFEIQFYNLCDPEHWAE 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P GG + + + S++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLIVEDEGSGI-PKAIIDRLFE 923 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPERQLGTRIRVTLPR 975 >gi|62860912|gb|AAY16575.1| MhaS [Pseudomonas putida] Length = 991 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L E + Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + S + F + + + + V Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + A++L+NL A + P G V + + S++ ++ G+ Sbjct: 858 CNPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVSEHTVDLIVEDEGSGIPKN 917 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D + L + Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976 >gi|297590965|ref|ZP_06949603.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus MN8] gi|76363428|sp|Q6GGK7|SRRB_STAAR RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|297575851|gb|EFH94567.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus MN8] gi|312438041|gb|ADQ77112.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus TCH60] gi|315195388|gb|EFU25775.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00] Length = 583 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|49483741|ref|YP_040965.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49241870|emb|CAG40563.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252] Length = 588 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 429 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 489 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586 >gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1559 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 58/240 (24%), Gaps = 28/240 (11%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H++ +P+ A+ ELL + D+ Q + Sbjct: 1156 QKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQSGPMPDQEQQNALRAI 1215 Query: 58 MSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 A L + ++ + V+ Sbjct: 1216 NVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIFTHTARTRKLSLTVTV 1275 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNL 157 L +R ++ L + + +V D I + G Sbjct: 1276 PPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGGVLLEAAFETVNDHFGTLILKVSDTGIG 1335 Query: 158 ARFPEKFTQIVDGN---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE Q+ D + + L + +H +L Sbjct: 1336 M-SPETVRQLFDPFRQHHTRDYEGTGLGLAISQRLVARMGGSIEVTSEPEHGSTFRIVLP 1394 >gi|322418337|ref|YP_004197560.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124724|gb|ADW12284.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 712 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 62/233 (26%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHN---SLELLDEV-GIEDEVMQLIRLSSM 58 ++ + ++ + +L I HD + + I ELL + ++ +S Sbjct: 333 QSEILKVQKLESLGVLAGGIAHDFNNILTGIMGNLSFAELLLDPYHPAMNPVKNAEKASQ 392 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113 A + + + +G + + +VQ Sbjct: 393 RAGELAHQLLTFSKGGQPIKKAVSVGRLLHESLSLSLLGTKVQTRLELPERLHAIEADEG 452 Query: 114 ERAKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFP 161 + + N+ + A ++P GG + + S G Sbjct: 453 QMNQAFSNVIINACQAMPVGGILTVKAENLALGAQNDLALPAGDYVRISFTDQGCGI-PY 511 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E I D + + V + ++ ++ L+ + Sbjct: 512 EDQKLIFDPYHSTKPGGSGLGLASVHSIVIKHGGKVEVASAPGQGTTLTFYIP 564 >gi|228962520|ref|ZP_04123875.1| hypothetical protein bthur0005_58260 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797170|gb|EEM44427.1| hypothetical protein bthur0005_58260 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 566 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + +I Sbjct: 337 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIISSEIE 396 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 397 RIESITTEFMAVAKPQVVKMQPNNMSVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 456 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 457 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 515 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + + + L Sbjct: 516 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 560 >gi|255100872|ref|ZP_05329849.1| two-component sensor histidine kinase [Clostridium difficile QCD-63q42] Length = 664 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 L ++++ L S + H+I +P+G I N+ LL + ++ ++ I + Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112 A + + + I + + + I ++ Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKMLQLKNVEIKIDCEHNLICYING 554 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +NL + ++ + GK+ I + + K NG + I + Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGIKEDALKD-IFNPFY 613 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y +N + E + Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657 >gi|225418785|ref|ZP_03761974.1| hypothetical protein CLOSTASPAR_06009 [Clostridium asparagiforme DSM 15981] gi|225041688|gb|EEG51934.1| hypothetical protein CLOSTASPAR_06009 [Clostridium asparagiforme DSM 15981] Length = 674 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 N S L + S I HD+ +P+ ++N LELL + I + ++ Sbjct: 421 RTNEQLEASQTALR-EMISNISHDLKTPLTVLNNYLELLGDETIASSERERTEYLGIAYH 479 Query: 62 ------IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + + + + +D R++ Sbjct: 480 KNLDLQRLIQNLFEVTRMEGGTVTYRIEWFSVDRLMGEIARKYADLIQDKGLDFRLEADR 539 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161 E S +L NL A P+GG + +S+ + + G P Sbjct: 540 GTELHIDSIRIWSVLDNLVYNALRHTPKGGSIALSIHKKGDLARLQVADTGEGIEARHIP 599 Query: 162 EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 F + + E S + Y V + E V + Sbjct: 600 HIFERFYKVSHERGERDGSSGLGLYIVKTTVEAMGGTVEVESTPGKGTVFTVT 652 >gi|168214234|ref|ZP_02639859.1| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] gi|170714323|gb|EDT26505.1| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] Length = 571 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 66/222 (29%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ + + I H++ +P+ +I E L + ++ + +I S L+ + Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407 Query: 69 LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118 + +++ + + + + + + + ++ Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 LLNL + +GGKV + +S I ++ NG + +I + Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNSDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVIAIP 568 >gi|86159890|ref|YP_466675.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776401|gb|ABC83238.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 520 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 79/230 (34%), Gaps = 18/230 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55 + + L + + A+ L + H+I +P+G I +L+ + + E ++LI+ Sbjct: 279 EREVSRRLFHAEKMSAVGQLAGGVAHEINNPLGGILAFAQLMSREERSPEDMESLRLIQD 338 Query: 56 SSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108 ++ A ++ + VD + D ++ + + V Sbjct: 339 AANRAKRIVESLLRFSRRPREEERGPVDLRQVVDDALFLLSPQLRAGRFEVVRRFEPAIA 398 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + + ++++NL + A ++ G VT++V + S+ G + +I Sbjct: 399 VGNGNQLQQVVVNLLVNALQAMGDRGTVTVAVGPAATGRLRLSVADTGPGV-PEDAAQRI 457 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 + + + + + E+ + E H L Sbjct: 458 FEPFFTTKPEGQGTGLGLSICYQIVEEHGGTIRLEQPGPHPGACFVLELP 507 >gi|329766324|ref|ZP_08257871.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137226|gb|EGG41515.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 307 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 77/216 (35%), Gaps = 10/216 (4%) Query: 8 NLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAI 61 + + + + SRI HDI +P+ I S+E L + + I+ + Sbjct: 86 KIQTEKMAIVGEMASRIGHDIRNPLSVIQMSIENLKRTYEINEQQQKQFDKIQRAIFRIS 145 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---I 118 ++ + L + + I + + +++ + ++ + K + Sbjct: 146 HQMDDVMDFVKTPTISKKQCSLISMLEESIKRIKIPENIKIIFPKNDTEILCDEEKITIV 205 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +N+ + A SL GG +TIS + +K E + ++ NG PE ++ + V + Sbjct: 206 FVNMMLNAIQSLDSGGTITISAKSNKKEVMIKIEDNGIGI-KPEILKRVFEPLVTTKQSG 264 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L Sbjct: 265 TGLGLSSCKSIIDSHGGFIEASNKFEKGAIFCIHLP 300 >gi|302342987|ref|YP_003807516.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639600|gb|ADK84922.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 610 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 64/232 (27%), Gaps = 24/232 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 + + ++ + H++ +P+ ++ S+ LL E + E++Q Sbjct: 379 TRLKEVERLKSEFVMAA--SHELRTPLTSLGMSVGLLLEHAVAGLAERDRELLQAAHEEI 436 Query: 58 MSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEK 108 + + + G ++ + + + + Sbjct: 437 QRMKALVDDLLDLSKIEAGRIELEFESVSVATLFDHAKAVFKNQLEMNGVSLTAELDAAA 496 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + KI L A + +GG + ++ S++ +G PE + Sbjct: 497 PPVRADANKITWVLTNLISNALRYVGKGGHIALAASVIGPCAHLSVRDDGPGI-PPEFQS 555 Query: 166 QIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V+ + + + + E L Sbjct: 556 KIFQKFVQVQGREAGGTGLGLAICKEIVRAHGGAIWVESAPGQGSKFIFTLP 607 >gi|160941450|ref|ZP_02088786.1| hypothetical protein CLOBOL_06342 [Clostridium bolteae ATCC BAA-613] gi|158435660|gb|EDP13427.1| hypothetical protein CLOBOL_06342 [Clostridium bolteae ATCC BAA-613] Length = 480 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + +N + L S I HD+ +PI AI +E +LD V E + + + Sbjct: 227 LKENAEDKIQYDKDNKELISNISHDLKTPITAIKGYVEGILDGVASSPEKLDKYIRTIYN 286 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102 + + + +D+ ++ D V Sbjct: 287 KSNDMDRLIDELTFYSKIDTNKIPYTFSKINVAQYFRDCVEEVGLDMEARGIELGYFNYV 346 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + + +++ N+ + L + + I ++D + ++ NG Sbjct: 347 DEDVVIIADAEQMKRVINNIISNSVKYLDKKKGIINIRIKDVGDFIQVEIEDNGKGIAAK 406 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ R+ + + +L K Sbjct: 407 DLPNIFDRFYRTDSSRNSAQGGSGIGLSIVRKIVEDHGGRIWATSKEGIGTEIHFVLRK 465 >gi|59710722|ref|YP_203498.1| osmolarity sensor protein [Vibrio fischeri ES114] gi|59478823|gb|AAW84610.1| EnvZ osmolarity sensory histidine kinase in two-component regulatory system with OmpR [Vibrio fischeri ES114] Length = 434 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 70/213 (32%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + ++ ALL + + HDI +P+ I + E++ ++ + + +++ + + Sbjct: 220 IQKLEQDRALLMAGVSHDIRTPLTRIRLATEMMSPEDSYLAESMIKDTEECNEIIGQFMD 279 Query: 66 FMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD + ++ + + + +++ NL + Sbjct: 280 YLKPVAKQDFTQVDVNTIVNEVILAEGGYEREIQTKLAMIPKAINGNAVAIKRVITNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181 A +V+ SV ++ NG + F G+ + + Sbjct: 340 NAIRYGGDWIQVSTSVSADHKTVWIIIEDNGPGVDNAQLETVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + +++ + + + + Sbjct: 400 GLAIVKRIVTQHQGEVSLSNRSEGGLKVQVEFP 432 >gi|328470474|gb|EGF41385.1| sensor protein TorS [Vibrio parahaemolyticus 10329] Length = 988 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+N S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 459 ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 516 Query: 62 IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ L + + + ++ + Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A G + +++ +F + G ++ Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + + L + + + Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691 >gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 608 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 66/220 (30%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++ + LE L + I + + + + I + + Sbjct: 380 FVANVSHELRTPLTSMKSYLEALADGAINDSEVAPRFIHVTQTETERMIRLVNDLLQLSK 439 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRV-------------QVSWTGEKIDLSRERAKIL 119 S+ + D I + V+ + ++L Sbjct: 440 MDSKDYSMNVVEINLPQFMDQIIERFEMATKNESISFKRRLTVNTDIIVFGDRDKLTQLL 499 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VES 174 N+ A P GG + S++ +K+ I S+K G P F + + Sbjct: 500 DNILSNAVKYSPEGGTILCSLKIAKDNVIVSIKDEGVGIPKENIPYVFDRFYRVDKARSR 559 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + H + + +S L Sbjct: 560 NLGGTGLGLAIAKEIVHAHGGSIWVSSDWGRGTTISFSLP 599 >gi|167760455|ref|ZP_02432582.1| hypothetical protein CLOSCI_02829 [Clostridium scindens ATCC 35704] gi|167661954|gb|EDS06084.1| hypothetical protein CLOSCI_02829 [Clostridium scindens ATCC 35704] Length = 585 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 68/233 (29%), Gaps = 22/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRL 55 N + ++ + L S I H+ + + I + + +ED ++++ Sbjct: 353 NDNLHHQRLETIGTLTSGIAHEFNNLLSPIMGYSVMALDVAEGEGEKEDLEDYLVEIYNS 412 Query: 56 SSMSAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + + V+ + + I + V V++ E + Sbjct: 413 TKNAKTLIRRISDLSRKNSDMTIMQVEFDPLIRKEMEAIIATKPSNMIVNVNYQAEDAMI 472 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKF 164 + ++ + + ++ G T + ++ NG E Sbjct: 473 TANPMQVSQMVLNLVINSIQAIQEAGNKTGEITVVTSCDTERVSLKVQDNGPGI-SKENL 531 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V + E++ + + S + Sbjct: 532 EKIYEPFFTTKEAGKGTGLGLAIVQQVVEEHRGTIEVQSEVGTGTTFSITFPR 584 >gi|197122273|ref|YP_002134224.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172122|gb|ACG73095.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 586 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED------- 47 + + S L +L L + I H+I +P+ I +L LD+ +D Sbjct: 344 LRAAQDQLVRSEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLDQGVPDDATRKTLV 403 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101 + + L++ + ++ + + L + + ++ +Q Sbjct: 404 KHLLLVQRETERCSAIVRNLLDFARERPLTLKDVDLDAVVEEGLQLLSNQINIQNVTLEK 463 Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGN 156 + + + +N+ M A ++ RGGK+T+ S + ++ G Sbjct: 464 RLVPLPPVEGDFGQLRQACVNVIMNACEAMARGGKLTVESSASASAGGGWVEIAFTDTGP 523 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + + ++ + ++ L Sbjct: 524 GIPPDHLS-KIFDPFFTTKERGTGLGLSVVYGIVERHHGKIEIQSEVGKGTRIAIRLP 580 >gi|119471398|ref|ZP_01613870.1| osmolarity sensor protein [Alteromonadales bacterium TW-7] gi|119445674|gb|EAW26958.1| osmolarity sensor protein [Alteromonadales bacterium TW-7] Length = 438 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 20/206 (9%), Positives = 59/206 (28%), Gaps = 10/206 (4%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 LL + + HD+ +P+ I + E++ + + + I + + Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMSDQDE--YLREGIIYDIEDMNGIIDQFIEYLRHHKR 284 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFMVAHASLP 131 + + + + +++ S +++ N+ A Sbjct: 285 EELSCEDINALVGEVVNCELKHQRSITFKSNPSIESIPLSSVAIKRVVTNMIENAIRYSD 344 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVIL 188 +V +K + ++ NG E F G+ + + + Sbjct: 345 GDIEVLSYYNSNKKYVVIAVNDNGPGIPESELESVFEPFKQGDAARGSEGSGLGLAIIKR 404 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ E + + L Sbjct: 405 IVDMHDGKVKLENRPEGGLSAQIYLP 430 >gi|332702284|ref|ZP_08422372.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552433|gb|EGJ49477.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 611 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 60/232 (25%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 + + + S A+ S + H+I +P+ + + + Sbjct: 371 LLEAQEHLVRSERFAAVGEAASHLAHEIKNPLLLMGGFAAQVRRGLAGEDPQAEKLRGKL 430 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT 105 Q+I + L+ + + V DF + + Sbjct: 431 QIIEDEAKRLETLLREVSGFTKPCKPDLIPQDINQAVLDTVRLVESDFSERGIECVLELS 490 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ +I L A ++P GGK+ + S++ G E Sbjct: 491 HDLPAVPFDKNQIQQVLLNLAKNAGEAMPSGGKIHFRSWHQGETVMVSVQDTGMGM-PSE 549 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + ++ + L Sbjct: 550 VLERIFSPFFTTKAKGTGLGLAVSFRIMEDHGGDIGATSTPGQGSTFVLTLP 601 >gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 595 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 68/225 (30%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + S + H++ +P+ +I ++ L + + D + +I + + + Sbjct: 371 EQMRTEFVSNVSHELKTPLTSIRGFIDTLKDGAVNDPEVAGKFLDIIDIEAERLSRLINE 430 Query: 67 M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + I Q + V ++ + + Sbjct: 431 ILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERKVGLHADIAESVSIQANKDKI 490 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++L+NL A G VT+ + + + + S++ G E +I + Sbjct: 491 KQLLINLIDNAIKYNIENGSVTVKAEQAGGKVLISVRDTGIGI-EKEYLDRIFERFYRVD 549 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V + + + R+ + + Sbjct: 550 RGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEFKIEIP 594 >gi|119715576|ref|YP_922541.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] gi|119536237|gb|ABL80854.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] Length = 682 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 67/221 (30%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 S + H++ +PI +I E+L++ + E + +R + ++ L + + Sbjct: 458 FVSSVSHELRTPITSILGYTEMLEDGVYGDLGREQLDAVRRVAANSTRLLSLINDLLTLS 517 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQ---------------VSWTGEKIDLSRERAKIL 119 + IG+ D + ++ V + +++ Sbjct: 518 RVQEDEIGIVDRVFDLRSVVSAGTAVVAPTLERRSLELTAELPDEPVPFLGDRDMLERVV 577 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173 +NL A P GG++ + + E++ + G ++ ++ Sbjct: 578 INLAGNAAKFTPEGGRIGVRLLVGPEESVIEVSDTGIGI-PHQEQERLFSRFFRSSLAQE 636 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ + + L Sbjct: 637 RAIPGSGLGLSIAHAIVEKHGGTMSVDSEPGEGTTFRVHLP 677 >gi|323702184|ref|ZP_08113851.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532871|gb|EGB22743.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 479 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 68/216 (31%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ I ++ L+ E I +E + I + + M + Sbjct: 252 FVADVSHELRTPLTTIRGNIALIRKMGDAEPQIREEALADIASEAERMSRLVSDMLVLAR 311 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121 + + ++ +IE K + + + +++L Sbjct: 312 ADAGLTLQLQPTAVQPLIEQIKRQAKLLAKDINFQVHMETACEKTLIMADPDYLRQLILI 371 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178 L A G V ++V+ ++ ++K G E F + + + Sbjct: 372 LLDNAFKFTAANGTVELAVKCGGDQVEVAVKDTGMGISPAELEHIFERFYRSDKSRPVGG 431 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++K ++ E V L Sbjct: 432 TGLGLSIARWIAAQHKSQITVESTVGQGSVFKVTLP 467 >gi|320354129|ref|YP_004195468.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122631|gb|ADW18177.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 520 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 28/237 (11%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI- 61 + +SS + ++ + + I H+I +P+G I +L+ + +D Sbjct: 275 MEQLVSSEKMASVGQMAAGIAHEINTPLGIILGYAQLMMDDFDKDSETYQNLEVIERQTK 334 Query: 62 -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110 LK+ R + +VD + D + E + + + + Sbjct: 335 ASRKIVADLLKYSRQSGSARETVDVNEIIEDAVAITEHSLNLSHIKVLLTLAPDLPPIVG 394 Query: 111 LSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++NL AH ++ G + + I ++ +G+ + Sbjct: 395 DPEKLRQVVVNLINNAHHAMEGQGSGELHLATRFDRQTGKVIAEVRDSGHGI-PEHIKAR 453 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH-------NVVLSALLE 214 I D + + + E+ + E + L Sbjct: 454 IFDPFFTTKPVGKGTGLGLSVSYGIIQEHGGTIEIESPVSGPAGTQLPGTLFRLALP 510 >gi|320107428|ref|YP_004183018.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319925949|gb|ADV83024.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 448 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 61/226 (26%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIRLSSMSAIIRLKFM-- 67 + + H++ +P+ +I +E L E + + I ++ + + Sbjct: 220 FVANVSHELRTPLTSIAGYVETLLEDPRLGVPNKGSARDFLGSIARNAARMTRLTEDLLA 279 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + VD+ + D FI + V T + + I+ Sbjct: 280 LARIESKEHQVKPAPVDTNTLIHDALDATSGFIREKEAVMDFGTLTSEMIYADAGAIVQV 339 Query: 122 LFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170 L + ++ + +D+ FS+ NG F + Sbjct: 340 LSNLIENAVNYGSSANGARIVIAVDASRDTPGMMQFSITDNGPGIASEHLERVFERFYRV 399 Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + ++ + E S L Sbjct: 400 DQARAIGTHGTGLGLAIARNIVEQHGGTIWVESRLGKGSRFSFTLP 445 >gi|298377731|ref|ZP_06987682.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298265434|gb|EFI07096.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 622 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 58/229 (25%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +AK + + + + H+I +P+ AI +LL ++ + + LI++++ Sbjct: 387 LAKEKAEEADMLK--STFLANMTHEIRTPLNAIVGFSDLLGVEEDSELRQNYISLIKMNN 444 Query: 58 MS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 M + S + + V+ + Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLDACPDII 504 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166 +I +NL A +G + + F + G E Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCGIPKDELDNI 564 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + + L Sbjct: 565 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 >gi|229167896|ref|ZP_04295627.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621] gi|228615536|gb|EEK72630.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621] Length = 448 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +A N S+ + S + H+ SP+ +I + L +++ Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105 I S K + L Q + ++ +K + V + Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 330 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 I + + ++ N+F + GG + V++ ++ + S+ NG E Sbjct: 331 VPDIFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGM-EQE 389 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I D ++ + V + + + + L K Sbjct: 390 EMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448 >gi|28900530|ref|NP_800185.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633] gi|260365411|ref|ZP_05777948.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030] gi|260877477|ref|ZP_05889832.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034] gi|260894852|ref|ZP_05903348.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466] gi|28808910|dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633] gi|308085317|gb|EFO35012.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466] gi|308090921|gb|EFO40616.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034] gi|308114304|gb|EFO51844.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030] Length = 988 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+N S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 459 ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 516 Query: 62 IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ L + + + ++ + Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A G + +++ +F + G ++ Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + + L + + + Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691 >gi|95931397|ref|ZP_01314107.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132553|gb|EAT14242.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 497 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 78/230 (33%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S + ++ L S I H++ +P+ A LELL + E + LI + Sbjct: 263 LKQTRQHLAHSERIASIGNLTSGIAHELGNPLSASIGYLELLKKRCEEPKNRDLIERALN 322 Query: 59 SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + G+ S + + +++ ++ + W + Sbjct: 323 ESHRMDQLIKDLLDFAAPDHESGHANCAPSDVLKHSCDMLLQQGALKERHLSTDWPEQLS 382 Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L+NL + A + G +TI+ ++ ++ ++ NG+ Sbjct: 383 HVSIPPIKLQQVLVNLILNARDATDSYGAITITATENDSKITIKVEDNGHGIEGQSL-ET 441 Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + Y L H+ + L + L Sbjct: 442 IFDPFYTTKAPGKGRGLGLYVSYQLVHDARGELQATSTQGKGSCFTVTLP 491 >gi|323487713|ref|ZP_08092971.1| two-component sensor histidine kinase [Planococcus donghaensis MPA1U2] gi|323398447|gb|EGA91235.1| two-component sensor histidine kinase [Planococcus donghaensis MPA1U2] Length = 608 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 20/219 (9%), Positives = 59/219 (26%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ + + LE L + + + + + + I + + Sbjct: 381 FVANVSHELRTPLTTMRSYLEALADGAWQDPDLAPNFLNVTQTETERMIRLVNDLLKLSK 440 Query: 73 Y------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121 + + ++ +V + +++ N Sbjct: 441 MDSSETELSKEMVEFNVFFNRIIDRFEMSKSHKVNFMRQLPKEQYFVEIDPDKLTQVIDN 500 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P GGKV ++ + + + G E +I D Sbjct: 501 IISNALKYSPEGGKVRFNMTVEEGYLLIQISDEGMGI-PKENVDRIFDRFYRVDRARSRE 559 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + L Sbjct: 560 MGGTGLGLAISKEMINAHGGVIWAESKLGKGTSIFFTLP 598 >gi|168699625|ref|ZP_02731902.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 633 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 79/237 (33%), Gaps = 24/237 (10%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIR 54 + + L S + A+ L + HD + + I+ +LL + + +Q + Sbjct: 255 RRRLEAQLRQSQKMEAVGRLAGGVAHDFNNLLTVINGYTDLLLKGAALDAGTRDSLQEVY 314 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R + VD + + ++ I D + V G Sbjct: 315 AAGKRAAGLTRQLLVFSRRSVAVACRVDLNDVVRGLVPMLGRLIGEDIELTVRAAGGLWP 374 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDS-------KNENIFSLKINGNLARF 160 + + ++++NL + A ++PRGG++T+ ++ + +++ G Sbjct: 375 IRADTGLIEQVVVNLCVNARDAMPRGGRLTVETWNAVLSGERAGEYAVLAVRDTGTGI-A 433 Query: 161 PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + V + H+ L + L + Sbjct: 434 ADVLPHIFEPFFTTKGPDRGTGLGLSTVQGIVHQFGGHLGVDSELGKGTTFRVQLPR 490 >gi|183221501|ref|YP_001839497.1| putative two-component sensor histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911587|ref|YP_001963142.1| two component response regulator sensor histidine kinase subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776263|gb|ABZ94564.1| Sensor histidine kinase of a two component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779923|gb|ABZ98221.1| Putative two-component sensor histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 424 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50 + + + + L +L L + I H+I +P+ I + + + + Sbjct: 187 LKERQDQLVEAEKLASLGLLSAGIAHEINNPLNFITGGYYGIKDFIQSTGIQSEKTEMYL 246 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------- 103 I++ +K + S D I + ++ + + R ++S Sbjct: 247 DAIKVGVERTTKIVKGLNQYTRTGDSFDEKIDIEEMLENCLVILFHTFRDKISVEKEFDS 306 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPE 162 S + ++ LNL A S+ K+ IS + + + +++ G E Sbjct: 307 EPVFIQGNSGKIHQVFLNLLTNAIQSMENKRGKLLISAKSEGDFVLVTIQDTGTGI-RKE 365 Query: 163 KFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 QI + + + E+ + E + L K Sbjct: 366 HLNQIQIPFFTTKEPGKGVGLGLSIAYKILKEHSASIDVESEWGEGTKFTIRLPK 420 >gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 927 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 54/226 (23%), Gaps = 23/226 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + + H++ +P+ AI E+L+E + + + + L Sbjct: 423 KSKSEFLANMSHELRTPLNAIIGYSEMLEEDAEDMGQDDFVPDLQKISGSAKHLLELINA 482 Query: 73 YTGSVDS---------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + + + L ++ K Sbjct: 483 VLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGTLYADQTK 542 Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----D 169 + +L+ A G +D+ E +FS+K G + D Sbjct: 543 VRQSLYNLLSNACKFTESGEVSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVFKAFTQAD 602 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + Sbjct: 603 ASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLPR 648 >gi|197118519|ref|YP_002138946.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087879|gb|ACH39150.1| sensor histidine kinase, Cache, PAS, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1260 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 K + L + + A+ L + HD + + I +LL ++++ Sbjct: 876 RKKLEEQLRQAQKMEAIGQLAGGVAHDFNNILTVIMGFGQLLQHSLPAGDPMLESMEQIL 935 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R V+ + + I D ++ + EK+ Sbjct: 936 DAADRATHLTRSLLAFSRKQVMLLHQVELSDLARKHAKFLVRIIGEDVTLKTYFCEEKLM 995 Query: 111 LSRERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLK 152 + + +I L A ++P + ++ Sbjct: 996 VMADSGQIEQVLMNLATNARDAMPGGGELTIKTEAVQLDEEFHRMHGYGMPGRYALITVT 1055 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G PE +I + + + + V + ++ + S Sbjct: 1056 DTGTGM-DPETQQKIFEPFFTTKLPGRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFS 1114 Query: 211 ALLE 214 L Sbjct: 1115 IYLP 1118 >gi|86360537|ref|YP_472425.1| two-component sensor histidine kinase [Rhizobium etli CFN 42] gi|86284639|gb|ABC93698.1| two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CFN 42] Length = 902 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 56/233 (24%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLS 56 + L + L + I HD+ +P+ AI + L + S Sbjct: 659 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + +G+++ L ++ +A ++ E + Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGTALARAAKILEHHKTEMSIPAELPM 778 Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P G + I + + + G + Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEGSVIQIEGWADADNVVVQISDEGPGIPPADLARVF 838 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215 D + + V + L K Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTITAGNRRGRPGAVFTIRLPK 891 >gi|323497025|ref|ZP_08102048.1| osmolarity sensor protein [Vibrio sinaloensis DSM 21326] gi|323317869|gb|EGA70857.1| osmolarity sensor protein [Vibrio sinaloensis DSM 21326] Length = 439 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 64/209 (30%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ + + + ++ + + +++ Sbjct: 224 EEDRALLMAGISHDLRTPLTRIRLATEMMSPQDSYLAEGIIGDTEECNEIISQFMDYLKP 283 Query: 70 AFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + VD D+ + + E + + + NL + A Sbjct: 284 VNKQSFIEVDLNDIAEDVASSEGGYEVQIETEFHHPMKETLGSPIAIKRAVSNLVVNALR 343 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 KV+ V ++ NG + F G+ + + Sbjct: 344 YGNGWVKVSTGVTADSKLVWVCVEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGLGLAI 403 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + Sbjct: 404 VKRIVSQHNGSVIVNNRSGGGLKVQISFP 432 >gi|314935218|ref|ZP_07842571.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp. hominis C80] gi|313656553|gb|EFS20292.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp. hominis C80] Length = 608 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + R + I + + Sbjct: 378 FVANVSHELRTPLTSMNSYIEALEEGAWKDENLAPSFLSVTREETERMIRLVNDLLQLSK 437 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122 + + + + I + + T + ++ N+ Sbjct: 438 MDNETEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPNETIFTEIDPDKMTQVFDNV 497 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 498 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 557 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 558 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 596 >gi|168698166|ref|ZP_02730443.1| integral membrane sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 496 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 19/232 (8%), Positives = 56/232 (24%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55 + L + L + + I H+I +P+ AI ++ + + + +I Sbjct: 251 RQVERDALRAEQLAWVGQMAAGIAHEIRNPLMAIKILIQTAADPLGLSPFRAKDLAVIER 310 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 + L + + + + + E + Sbjct: 311 EIGRLEHTVTGFLDFARPPRPERQATDLRSLLEQAVAGLQARADRQKVALGIEVPAEPVT 370 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGNLARFPE 162 L + + ++ + + ++ E + + G Sbjct: 371 LLVDPNQFGQVVYNLLYNAIDAQPGGGRVRISVEAATREGGGPELVLRVADEGAGLPAA- 429 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D V + + + + + V + L Sbjct: 430 VGERIFDPFVSTKETGLGLGLSICRRIVEAHGGTIRAGSPPAGGAVFTVRLP 481 >gi|139439273|ref|ZP_01772715.1| Hypothetical protein COLAER_01731 [Collinsella aerofaciens ATCC 25986] gi|133775297|gb|EBA39117.1| Hypothetical protein COLAER_01731 [Collinsella aerofaciens ATCC 25986] Length = 541 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------------- 45 + + L A L I HD+ +P+ +I + ++L + G Sbjct: 295 REEAAVLAKNEQLRANLLRSISHDLRTPLTSISGNADVLLDQGSTGTAVLDAQTRRGLLL 354 Query: 46 ----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + ++ +D ++ K V Sbjct: 355 SIRSDALWLNATVENLLAITKLEGGGMRLSTTLELMDDIVEEALRHVNPAVREHDLKVVP 414 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R ++++NL A P G + IS+ S+ +G P Sbjct: 415 CDEPALVNVDARLMVQLVVNLVNNAVTYTPAGSHIVISIGVDGGHVTCSVADDGPGI-AP 473 Query: 162 EKFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + S + +A + + D H V + L Sbjct: 474 EDRERIFESFYTANHGLADSHRSVGLGLSLCRSIALAHGGSIEVAAADPHGSVFTIELP 532 >gi|320353586|ref|YP_004194925.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122088|gb|ADW17634.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 481 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 71/232 (30%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQL 52 + + + + L +L L + + H + +P+ I S ++ + ++ Sbjct: 239 LERRQDQLIQAEKLSSLGTLTAGVAHQLNNPLNNISTSCQIAVDEFDSGDVPLLKRMLTN 298 Query: 53 IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107 I ++ A L+F R + + + + + + + + Sbjct: 299 IDQETLRARDVVKSLLEFSRAQDFCLREIQLAEVVSKAVLLAKSQVPPQIAMTIDIPRDL 358 Query: 108 -KIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ +NL + A ++ + ++ + +E + + G E Sbjct: 359 VFSIDVQRMQEVFINLIINAAQAIEGEGRISIEAALDAAADEVVIEVSDTGAGI-SEENQ 417 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + V + +++ + + L Sbjct: 418 ARVFDPFFTTKEAGQGTGLGLSVVYGIIQKHQGTITVQSTPGQGTSFVIRLP 469 >gi|251771346|gb|EES51927.1| integral membrane sensor signal transduction histidine kinase [Leptospirillum ferrodiazotrophum] Length = 458 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS 59 L +R+ H++ +P+ AI +L+ D + + I ++S Sbjct: 212 RHEMALLRERARQEFFARMSHELRTPLNAITGYSQLILSGEDREKESGQDAEKILIASRH 271 Query: 60 AIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSWTGE 107 + + + + ++ I +V G Sbjct: 272 LEALIDDLFDMAKIGNRKLLLEPRPFRLEELVEEAADMLRPAIEGSGNRLVVRRVPLEGP 331 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQ 166 + R +IL+NL A G S D + F + ++ P++ ++ Sbjct: 332 VVTDRRRVRQILINLLENARKFTDHGEIRLSSSPDPDAPHFFRVIVSDTGIGMTPDQTSR 391 Query: 167 IVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + ++ + LA + E + L K Sbjct: 392 IFEPFTQADENTRLRYGGTGLGLAISRSLARLMGGTITVESHPGKGSSFTLRLPK 446 >gi|190895523|ref|YP_001985815.1| two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CIAT 652] gi|190699468|gb|ACE93552.1| two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CIAT 652] Length = 902 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 56/233 (24%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLS 56 + L + L + I HD+ +P+ AI + L + + S Sbjct: 659 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRADLLSTVVDES 718 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + +G+++ L ++ +A ++ E + Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGTALARAAKILEHHKTEMSIPAELPM 778 Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P + I + + + G + Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPERSVIQIEGWADADNVVVQVSDEGPGIPPADLARVF 838 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215 D + + V + L K Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRRGRPGAVFTIRLPK 891 >gi|223938486|ref|ZP_03630379.1| PAS/PAC sensor signal transduction histidine kinase [bacterium Ellin514] gi|223892905|gb|EEF59373.1| PAS/PAC sensor signal transduction histidine kinase [bacterium Ellin514] Length = 392 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 59/219 (26%), Gaps = 24/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYTG 75 + + H++ +P+ I +E L + ++ + + + + + Sbjct: 172 FVANVSHELRTPLSLIKGFVETLIDGAKDNPELCTRFLGTIEKHTDRLTFLIEDLLTISK 231 Query: 76 SVDSLIGLGDIEQVIEDFIAVDK--------------RVQVSWTGEKIDLSRERAKILLN 121 I + E + + + + ++ + + ++L N Sbjct: 232 LESGQIVMNLNEVNLNNEVGRAVDDLQSRASGKNVKLQNTLAEDLKARADADRLQQVLFN 291 Query: 122 LFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 L A GG VTI + ++ +K +G E ++ + Sbjct: 292 LIENAIKYGRTGGNVTIGGKALPGDKVEIWVKDDGPGI-PDEARERVFERFYRVDRARSR 350 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + + + L Sbjct: 351 ETGGTGLGLAIVKHIVQAHGGEVWVSSEPGQGTTFYFTL 389 >gi|288555765|ref|YP_003427700.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288546925|gb|ADC50808.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 378 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 14/227 (6%) Query: 1 MAKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + K L M+ V+ + + + H++ +P+ I ++L G ++ + Sbjct: 147 LQKQFEHLLTFHHQMEAVSHIAAGVAHELRNPLSVIKGFMQLAKLTGDHEKYYDTVISEL 206 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110 ++ +E +IE A V Sbjct: 207 NRMNSIIEDFLSVSRKKIDRKKQSPAHIMESLIEIMKAECLLHDVELTLNIEEADRHVYA 266 Query: 111 LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++LNL + + K +I + + NG E Q+ Sbjct: 267 NESMVKQVMLNLLRNSIEAYGGSNTARKFSIHAAACDSVYRVIISDNGKGM-PDEVLEQL 325 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ + E +S L Sbjct: 326 GKPFFTTKESGTGIGIPLCKKIIEDHGGEFIIESKLSVGTTVSLTLP 372 >gi|322421384|ref|YP_004200607.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127771|gb|ADW15331.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 699 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 67/242 (27%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 MA+ + + M+ + + S + HD + + AI L L+ + + + L+ Sbjct: 444 MAEQLRQS-QKMEAIGEVASGVAHDFNNLLTAIAGFATLAQANLERDTASYQYLDEVLLT 502 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111 S A + + L + + IE + Q+ + Sbjct: 503 SERATYLTRGLLAFGRKESPHPEPADLNVVVERIEKLLRRLMSQQIELRISLCEGALTVL 562 Query: 112 --SRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154 ++++NL A ++ G + I + S++ + Sbjct: 563 AAPGRIDQVIMNLATNARDAMDNAGIIRIETAMAEIGPDFVTGRGAGAPGSYARLSVRDS 622 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ + + + V + ++ + Sbjct: 623 GKGM-DEATRARLFEPFFTTKGVGKGTGLGLSIVHRIVQQHGGFIDIASTPGAGASFDVY 681 Query: 213 LE 214 L Sbjct: 682 LP 683 >gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 580 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 72/242 (29%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIR 54 + ++ L++ + + + + H++ +P+ ++ E+L + + ++ + + Sbjct: 337 LRESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFSEVLQDELYGPMNEKQREYVN 396 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDK 98 +S L + + + L E+ + + + Sbjct: 397 NIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDMLGDSLAMFKEKALRSAVGIHL 456 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + R+ +I+ NL A P GG + +S + + ++ G Sbjct: 457 EFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQVSARRMPDFVEIAVADTGIGI 516 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + ++ + + L + R+ + S Sbjct: 517 KAQDIP-KLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELHGGRIRVKSKFGTGSRFSFT 575 Query: 213 LE 214 + Sbjct: 576 IP 577 >gi|253568655|ref|ZP_04846066.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842728|gb|EES70808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 513 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +++ + G E+E + +++ S + Sbjct: 276 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMICQTGEEEEKQEYMKIVSSNN 335 Query: 61 IIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + L+ + + + L + V +++ Sbjct: 336 ELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQMQEKNTSPDVAITFTEKAEE 395 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A P+G D + F +K G + Sbjct: 396 CILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKDEIYFYVKDTGIGIPADKIN 455 Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + L Sbjct: 456 EVFERFVKLNTFAKGTGLGLAICRVIVERLGGTIGADSKEGEGSCFWFRLP 506 >gi|228900581|ref|ZP_04064803.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL 4222] gi|228859064|gb|EEN03502.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL 4222] Length = 351 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + + +G + Sbjct: 234 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRASGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 346 >gi|229095302|ref|ZP_04226294.1| hypothetical protein bcere0020_5590 [Bacillus cereus Rock3-29] gi|228688161|gb|EEL42047.1| hypothetical protein bcere0020_5590 [Bacillus cereus Rock3-29] Length = 463 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 66/219 (30%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVKGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVIV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + + Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + ++ D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNIIVTSEVDYGSCFIISLP 454 >gi|220915723|ref|YP_002491027.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953577|gb|ACL63961.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 516 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + + L + L A+ + ++I H+I +P+ AI + ELL E Sbjct: 270 LDRQRADLLRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLV 329 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105 + L +I + + A V + Sbjct: 330 SAISREVDRLNAVTEEYLRFARLPRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALA 389 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160 + + ++ + ++P GG VT+ + + + + G Sbjct: 390 PGLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPP 449 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + + E+ + E + + Sbjct: 450 GDLT-RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502 >gi|160884048|ref|ZP_02065051.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483] gi|156110390|gb|EDO12135.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483] Length = 400 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 62/220 (28%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI +L+ +++ ++I +S + Sbjct: 178 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 237 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ +D + L V+ Sbjct: 238 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFCHKTQNGVKLILDDVNTDMYTSGDWNRI 297 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +I+ NL A P+G + ++ ++ F +K +G T Sbjct: 298 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVND 356 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L + R+ + L Sbjct: 357 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 396 >gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 568 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 69/237 (29%), Gaps = 28/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 AK + + L + + H++ +P+ +I +L + + + + +++ Sbjct: 330 AKERAESADHLKSAFL--ATMSHELRTPLNSIIGFTGILLQGLSGPINDEQAKQLGMVKN 387 Query: 56 SSMSAIIRLKFMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106 S+ + + + + I +V++ + ++ + + Sbjct: 388 SANHLLSLISDVLDISKIEAGQLKVEHEPFDLRESILKVVQSVRPLAEKKGLDLSCDLAE 447 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +R ++LLNL A +GG ++ ++ +G + E Sbjct: 448 QVGNISGDARRVEQVLLNLLSNALKFTEQGGVRVSCGREGDAFLTS-VRDSGIGIKDEEL 506 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + E + L Sbjct: 507 -ERLFKPFHQVDTGLSRKYEGTGLGLSISKKLVELMGGEIRVESSPGKGSTFAFTLP 562 >gi|86158433|ref|YP_465218.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774944|gb|ABC81781.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 584 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 73/236 (30%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED------- 47 + + S L +L L + I H+I +P+ I +L LD+ +D Sbjct: 344 LRAAQDQLVRSEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLDQGVPDDATRKTLV 403 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101 + + L++ + ++ + + L + + ++ +Q Sbjct: 404 KHLLLVQRETERCSAIVRNLLDFARERPLTLKDVDLDAVVEEGVQLLSNQINIQNVTLEK 463 Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA 158 + + + +N+ M A ++ RGGK+T+ + + G Sbjct: 464 RLVPLPPVEGDFGQLRQACVNVIMNACEAMARGGKLTVESALVEGGRWVEVAFTDTGPGI 523 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + + ++ ++ L Sbjct: 524 APAHLS-KIFDPFFTTKERGTGLGLSVVYGIVERHHGKIEIHSEVGKGTRVAIRLP 578 >gi|75762529|ref|ZP_00742387.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489992|gb|EAO53350.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 282 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 48 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 104 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 105 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 164 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + + +G + Sbjct: 165 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 224 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 225 FERFYKADSSRNRASGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 277 >gi|319940602|ref|ZP_08014945.1| hypothetical protein HMPREF9464_00164 [Sutterella wadsworthensis 3_1_45B] gi|319805968|gb|EFW02726.1| hypothetical protein HMPREF9464_00164 [Sutterella wadsworthensis 3_1_45B] Length = 586 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56 +++ ++ + L S + H++ +PI A+ E L E + + + Sbjct: 353 RDVSQDVQVEQIKDRLISVVAHELKTPITALRLQAETLATQIGIGEEERSQILQDMQDEA 412 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEK 108 + ++ ++ G V + I I+ + + Sbjct: 413 FRLRSLVDDWLDISRLEEGKVQLQRRIMHIATPIDRAAKIVNARYPITVTRSIDTEAECF 472 Query: 109 IDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ +NLF A V ++V + +K NG + Sbjct: 473 RFDPERITQVFINLFNNAARYHREGADPCVHVTVTKEGDWVAIRVKDNGVGIAKSKMPYI 532 Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + +L Sbjct: 533 FEHFFQADMSIARRRGGTGLGLAIVKGIVDVHGGTISVASEVGVGTEFTLVLP 585 >gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 554 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 61/224 (27%), Gaps = 26/224 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + + + H++ +P+ +I ELL + + ++ S ++ + + Sbjct: 325 SEFLAMMSHELRTPLTSIIAFTELLNRNSEPADEKEAETRREIEANSRALLLMINDILEM 384 Query: 70 AFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL- 120 + G ++ V + ++ + K+ Sbjct: 385 SRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGIAFACEIDPDVPLVTADFEKLRHV 444 Query: 121 --NLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV---- 172 NL A P GG V +S+ + G + +I D V Sbjct: 445 LENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVADTGIGIAKKD-QRRIFDRFVQADS 503 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + A + + E H V + + Sbjct: 504 SASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSVFTVRIP 547 >gi|212703052|ref|ZP_03311180.1| hypothetical protein DESPIG_01090 [Desulfovibrio piger ATCC 29098] gi|212673640|gb|EEB34123.1| hypothetical protein DESPIG_01090 [Desulfovibrio piger ATCC 29098] Length = 566 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 73/233 (31%), Gaps = 25/233 (10%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDE----------- 48 L S + AL + + + H++ +P+ I + +LL + ++ Sbjct: 321 ARMLQSSKMAALGKMAAGVAHEVNNPLMLIQENAGWIRDLLQDENPKNMVNYDEIMESTD 380 Query: 49 -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTG 106 + + ++ + L F R + + + E + + + ++ ++ Sbjct: 381 KIEKHVQRAKGITQRMLGFGRRMNPGRSEIMVNVLVDQATEFLKTEARGRNIAIEKEFSA 440 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + A++ A ++ + G +T+ + +N K G E Sbjct: 441 DVPVILSDSAQLEQVFINIIDNAIDAIGKNGSITVRTEPWENGARIYFKDTGPGM-DEET 499 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + R+ + L Sbjct: 500 MQRIFDPFFTTKAVGEGTGLGLAICFTILEKLGGRIEVNSVVGQGTTFCISLP 552 >gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 763 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 67/242 (27%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHN----------------------SLE 38 + + S+ + S + H++ +P+ I L+ Sbjct: 372 LRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQ 431 Query: 39 LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + + G M L + + I ++ ++ I + Sbjct: 432 TIQDSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQL 491 Query: 99 RVQVSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +Q+ +IL +L A P GG V + + NE IF ++ G Sbjct: 492 ELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNEAIFQVEDTGIG 551 Query: 158 ARFPEKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + Q ++ + T + L + + E + + + Sbjct: 552 IAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESVLQEGSIFTVR 611 Query: 213 LE 214 L Sbjct: 612 LP 613 >gi|161617312|ref|YP_001591277.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366676|gb|ABX70444.1| hypothetical protein SPAB_05163 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 527 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 302 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 361 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 362 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 421 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 422 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 480 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 481 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 520 >gi|149178901|ref|ZP_01857479.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797] gi|148842240|gb|EDL56625.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797] Length = 592 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 58/235 (24%), Gaps = 25/235 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 L S L + + H++ +P+ +I E L D+ I + I + Sbjct: 359 TELRRLES--LRQEFVANVSHELKTPLSSIKAYTETLIRGAMDDPEINKTFLLRIEEQAD 416 Query: 59 SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + F + + + + + + I Sbjct: 417 RLHQLILDLISLASIESGNQVFDIINIELRPFVESCLVDQQKVAESKQIELLIEESEPGI 476 Query: 110 DLSRER---AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLA---RFPE 162 + + +IL NL A P ++ N + ++ G Sbjct: 477 KVKADEEGLHQILGNLINNAIKYTPDQGRITIRWQREEGNMVLLQVQDTGIGIAEKYQAR 536 Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + V L + S L + Sbjct: 537 LFERFFRVDKARSRELGGTGLGLSIVKHLVQSFNGTIGVTSKVGEGSTFSVRLPR 591 >gi|329725290|gb|EGG61777.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21189] gi|329730872|gb|EGG67250.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21193] Length = 592 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 374 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 433 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 434 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 493 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 494 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 553 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 554 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 590 >gi|329314169|gb|AEB88582.1| Sensor protein srrB [Staphylococcus aureus subsp. aureus T0131] Length = 564 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 405 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 406 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562 >gi|304380924|ref|ZP_07363583.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304340510|gb|EFM06445.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 421 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 203 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 262 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 263 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 322 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 323 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 382 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 383 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 419 >gi|283770562|ref|ZP_06343454.1| two-component system OmpR family sensor histidine kinase ResE [Staphylococcus aureus subsp. aureus H19] gi|283460709|gb|EFC07799.1| two-component system OmpR family sensor histidine kinase ResE [Staphylococcus aureus subsp. aureus H19] Length = 582 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 424 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 483 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580 >gi|282924740|ref|ZP_06332407.1| sensor protein srrB [Staphylococcus aureus A9765] gi|282592747|gb|EFB97753.1| sensor protein srrB [Staphylococcus aureus A9765] Length = 582 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 424 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 483 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580 >gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18] gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18] Length = 584 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 19/222 (8%), Positives = 52/222 (23%), Gaps = 25/222 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + + H+I +P+ + ELL ++ + + S L + + Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHTELDGKQRSYAEMLHRSGESLLGIISDILNISK 257 Query: 76 SV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119 D ++ + + ++ + ++L Sbjct: 258 IEAGKLEIERIGFDLHEATRSAVELYREVGRRKGVAIELQIAPDVPRHAVGDPNRLRQVL 317 Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIV-----DG 170 +N+ +G + + F +K G DG Sbjct: 318 INIINNGLKFTEKGSVRIRVTLVEKSGNGHYVGFEIKDTGIGIPGEAIGAIFELFAQVDG 377 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L + E + + Sbjct: 378 STTRKYGGTGLGLAIAKQLVELMGGEIEVESEPGQGSTFTFI 419 >gi|253730990|ref|ZP_04865155.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725273|gb|EES94002.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 549 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 331 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 390 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 391 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 450 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 451 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 510 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 511 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 547 >gi|161509720|ref|YP_001575379.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|160368529|gb|ABX29500.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|269940983|emb|CBI49367.1| sensor kinase SrrB [Staphylococcus aureus subsp. aureus TW20] gi|302751323|gb|ADL65500.1| integral membrane sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|323439507|gb|EGA97228.1| respiratory response protein B [Staphylococcus aureus O11] gi|323441525|gb|EGA99176.1| respiratory response protein B [Staphylococcus aureus O46] Length = 564 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 405 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 406 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562 >gi|37781575|gb|AAP35032.1| SrrB [Staphylococcus aureus] Length = 583 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|57650447|ref|YP_186376.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus COL] gi|88195296|ref|YP_500100.1| respiratory response protein SrrB [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221611|ref|YP_001332433.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus subsp. aureus str. Newman] gi|221140088|ref|ZP_03564581.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733261|ref|ZP_04867426.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|258451149|ref|ZP_05699184.1| sensor protein srrB [Staphylococcus aureus A5948] gi|284024551|ref|ZP_06378949.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus subsp. aureus 132] gi|294848521|ref|ZP_06789267.1| sensor protein srrB [Staphylococcus aureus A9754] gi|297207789|ref|ZP_06924224.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911870|ref|ZP_07129313.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus TCH70] gi|76363425|sp|Q5HFT1|SRRB_STAAC RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|76363429|sp|Q6G973|SRRB_STAAS RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|76363430|sp|Q8NWF3|SRRB_STAAW RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|123003464|sp|Q2FY80|SRRB_STAA8 RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|57284633|gb|AAW36727.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus COL] gi|87202854|gb|ABD30664.1| staphylococcal respiratory response protein SrrB, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374411|dbj|BAF67671.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus subsp. aureus str. Newman] gi|253728801|gb|EES97530.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130] gi|257861204|gb|EEV84017.1| sensor protein srrB [Staphylococcus aureus A5948] gi|294824547|gb|EFG40970.1| sensor protein srrB [Staphylococcus aureus A9754] gi|296887806|gb|EFH26704.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886116|gb|EFK81318.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus TCH70] gi|315198818|gb|EFU29146.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus subsp. aureus CGS01] gi|320140625|gb|EFW32479.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA131] gi|320144161|gb|EFW35930.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA177] Length = 583 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|75416541|sp|Q9L523|SRRB_STAAU RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|7839534|gb|AAF70313.1|AF260326_2 SrrB [Staphylococcus aureus] Length = 583 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|21283174|ref|NP_646262.1| respiratory response protein SrrB [Staphylococcus aureus subsp. aureus MW2] gi|49486329|ref|YP_043550.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87162310|ref|YP_494137.1| staphylococcal respiratory response protein, SrrB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|262049078|ref|ZP_06021955.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus D30] gi|21204614|dbj|BAB95310.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus subsp. aureus MW2] gi|49244772|emb|CAG43208.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87128284|gb|ABD22798.1| staphylococcal respiratory response protein, SrrB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|259162747|gb|EEW47312.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus D30] Length = 588 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 429 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 489 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586 >gi|118581010|ref|YP_902260.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503720|gb|ABL00203.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 661 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57 + + + +D V L I HD + + AI E++D + ++ Sbjct: 278 LLETQLHQMQKLDAVGQLAGGIAHDFNNILTAIIGFAEVMDMRMEQGAPLRHHVRQILAA 337 Query: 58 -MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109 A + + + L +I ++ + + + + Sbjct: 338 AERAADLTQGLLAFSRKQVLHVRCLDLREIIDGLKKMLCRLIPEDIDFRVKTAATEMTVM 397 Query: 110 DLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKIN 154 + ++L+NL A ++P T N + S+ N Sbjct: 398 ADRGQIEQVLMNLVTNARDAMPGGGVLTIKTGTGVIDEEFVRTNGFGVMGNYALISVTDN 457 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E ++ + + + + + ++ + + Sbjct: 458 GCGMN-AETREKVFEPFFTTKRRGKGTGLGLSIIYGIVKQHDGFITVDSSPGQGATFRVY 516 Query: 213 LE 214 L Sbjct: 517 LP 518 >gi|262382343|ref|ZP_06075480.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295221|gb|EEY83152.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 569 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 68/229 (29%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + + + H+I +P+ AI ++L + + ++ + + Sbjct: 335 LERAKEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRLEFSNIIQSNN 394 Query: 61 IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--E 107 + + +D + + +I +I + ++++ Sbjct: 395 ELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRMPSGIELRLNDCEALV 454 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +IL NL + + G + + + F ++ +G +K I Sbjct: 455 MEADKNRLTQILTNLLTNSIKHTEK-GFIRFGYKRTAASVEFFVEDSGEGI-PRDKIDSI 512 Query: 168 VDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V+ S + L + ++ + L Sbjct: 513 FSRFVQLDSWSKGVGLGLAICRGLVEQMGGKIWVTSELGKGSIFYVTLP 561 >gi|239908643|ref|YP_002955385.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798510|dbj|BAH77499.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 570 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 68/236 (28%), Gaps = 22/236 (9%) Query: 2 AKNICFNL--SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------VGIED 47 A+ + S L ++ L + + H+I +P+ I+ L+ + Sbjct: 329 ARELALRQVEHSQKLSSIGRLAAGVAHEINNPLAVINEKTGLMRDLIGLRDDFPDKERYL 388 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQV 102 ++ + + M + M I + D+ + ++ + + + Sbjct: 389 LLIDSVLKTVMRCRDITRRMLGFARRLDVTLEEININDVITETSGFLNQEALHRKIDLHL 448 Query: 103 SWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E + +R ++ LN+ A A++P GG + I + ++ NG Sbjct: 449 DLDPEVTGIVSDRGQLQQVFLNILNNALAAVPDGGHIEIHTRGDAEGVSVIVRDNGCGMS 508 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + E D + K Sbjct: 509 KDTMACIFEPFFTTKKTKGTGLGLSITYGIVKRLGGEIGVESELDKGTAFTLRFPK 564 >gi|218515205|ref|ZP_03512045.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli 8C-3] Length = 535 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 49/236 (20%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRL 55 + + L L S H+ +P+ I + + L + E + Sbjct: 286 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLAEKAD 345 Query: 56 SSMSAI--------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S++ S+ +I Q Sbjct: 346 QIRSSVSRMLELMESILAAGRLDHGRITIVPKPCSIAEIIETCSARQESIRRSHRFLLKL 405 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ NLF A P V +S +++ G Sbjct: 406 DELPETIYGDRPALDQVFSNLFSNAVKYAPDSPNVHVSGWREGERVCITVRDEGIGIDVD 465 Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + + + + + Sbjct: 466 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIP 521 >gi|161528164|ref|YP_001581990.1| histidine kinase [Nitrosopumilus maritimus SCM1] gi|160339465|gb|ABX12552.1| histidine kinase [Nitrosopumilus maritimus SCM1] Length = 417 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 15/225 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + K L ++ L SR+ HDI +P+ I ++LL + + ++L Sbjct: 194 LRKQSEKERRLEKLASIGELASRVSHDIRNPLTTIKGVVDLLTSQKSTVTDEKDIQRLEL 253 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 I+ S +++ + L +I + +++ V+VS+ + + Sbjct: 254 IKKSVTQINHQVEDVLDYVRTNKISLEKTSLLEIINLAAKRVSIPDSVEVSYPEKDYTIR 313 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ K+ + A ++ R GK+ I ++ N ++ +G I + Sbjct: 314 CDKLKMEIVFVNLLLNAVDAVRREGKIAIRMKSVDNFIEIQVEDSGPGIDSESISE-IFE 372 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++ + + ++ Sbjct: 373 PLFTLKQKGTGLGLASCKNIIEQHEGTINVSNNP---TTFTIMIP 414 >gi|161521754|ref|YP_001585181.1| integral membrane sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189352083|ref|YP_001947710.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia multivorans ATCC 17616] gi|160345804|gb|ABX18889.1| integral membrane sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189336105|dbj|BAG45174.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia multivorans ATCC 17616] Length = 1029 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 63/244 (25%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + + H+I +P+ I +LELL+ ++ ++ Sbjct: 501 LVQKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSTLDLPQRSRVQT 559 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 +A L+ + +T + + IE IA + Sbjct: 560 LRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLFCE 619 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155 + S + A++ NL A G +++ G Sbjct: 620 IAASASQRMRGDPTRLAQVFGNLLSNAIKFTAHGHVTARVRAVRGECGTAELAIAIEDTG 679 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + L R+ + Sbjct: 680 IGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFT 739 Query: 211 ALLE 214 L Sbjct: 740 VRLP 743 >gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 892 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 57/235 (24%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I +P+ I +L+LL E + ++ + ++ S S Sbjct: 517 LGHSKELAEQASQAKSEFLANMSHEIRTPMNGILGTLQLLQEQPLNEKSKEYLKKSLYST 576 Query: 61 IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L + + L V + + + Sbjct: 577 RALTTIINDILDFSKIEAGKLSLEHKPFDFFELIHHLESDLGVQATDKNIYLKFVIDIEH 636 Query: 107 EKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ LNL A +GG ++ + G Sbjct: 637 KHWVGDPVRLRQVFLNLISNAIKFTSQGGVTVTFRLTDESRICCCISDTGIGISEQAI-D 695 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + L Sbjct: 696 RLFERFEQAEQSTTREYGGTGLGLPITKSLIGLMNGEIKVTSQLGSGSQFYVYLP 750 >gi|197334116|ref|YP_002154884.1| osmolarity sensor protein EnvZ [Vibrio fischeri MJ11] gi|197315606|gb|ACH65053.1| osmolarity sensor protein EnvZ [Vibrio fischeri MJ11] Length = 434 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 70/213 (32%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + ++ ALL + + HDI +P+ I + E++ ++ + + +++ + + Sbjct: 220 IQKLEQDRALLMAGVSHDIRTPLTRIRLATEMMSPEDSYLAESMIKDTEECNEIIGQFMD 279 Query: 66 FMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD + ++ + + + +++ NL + Sbjct: 280 YLKPVAKQDFTQVDVNTIVNEVILAEGGYEREIQTKLAMIPKAINGNAVAIKRVITNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181 A +V+ SV ++ NG + F G+ + + Sbjct: 340 NAIRYGGDWIQVSTSVSADHKTVWIIIEDNGPGVDSAQLETVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + +++ + + + + Sbjct: 400 GLAIVKRIVTQHQGEVSLSNRSEGGLKVQVEFP 432 >gi|254226475|ref|ZP_04920060.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V51] gi|125620981|gb|EAZ49330.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V51] Length = 339 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 100 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 159 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 160 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 219 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 220 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 278 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 279 EALPHLFEPFHTTKKNGLGLGLSISQQILHSMQGALSVATSPLGGARFTITLPR 332 >gi|295094558|emb|CBK83649.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1] Length = 526 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA + + S I HD SP+ +I +E + + ++ + ++ Sbjct: 254 MADELSRSNEYRKS---FISNISHDFRSPLTSIKGYIEAMLDGTIPLEKHEKYLGIVLNE 310 Query: 57 SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSW 104 + + + S + DI + + V ++ Sbjct: 311 AQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTINTFEKRCKDRGIFLDSVFLTD 370 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FP 161 + +++ NL A P G ++ + V + N+ S+K G Sbjct: 371 NTVVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIYTSVKDEGVGIPKDAQK 430 Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + D + + + ++ + L K Sbjct: 431 KVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGEGSEFIFSLPK 486 >gi|293189575|ref|ZP_06608294.1| two-component sensor histidine kinase [Actinomyces odontolyticus F0309] gi|292821475|gb|EFF80415.1| two-component sensor histidine kinase [Actinomyces odontolyticus F0309] Length = 480 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 50/204 (24%), Gaps = 11/204 (5%) Query: 22 ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRL-----AFGYT 74 + H++ +PI + +ELLD + E L+ + + Sbjct: 266 VSHELRTPITVVRGHMELLDPDDHDDVVETRALVIDEIDRMGTLVGDLLELARASDTVNP 325 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 S D + + + + L L A G Sbjct: 326 ASTDLAALTEAVLDKARALGDRQWTLGEAAQVTCCLDPTRITQAWLQLAQNAVQYSADGT 385 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG-NVESTIDSHDIQFYYVILLA 190 + I ++ G + + V G ++ + V +A Sbjct: 386 LIAIGSGTDSQWARLWVRDRGVGIAPDDIECVRQRFVRGTAGTESVAGSGLGLNIVESIA 445 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + L E + ++ Sbjct: 446 RAHGGHLDIESTPGVGSTFTLVIP 469 >gi|317154216|ref|YP_004122264.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944467|gb|ADU63518.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 479 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 22/227 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-------SSMSAII 62 + A + + H+I +P+ +I +++L+ + + + R S + + Sbjct: 242 REERMRADFVAMLSHEIRTPLTSIREAVDLVGSGALGEVNERQERFLAIAGQESIRLSDL 301 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------SWTGEKIDL 111 + M ++ + ++D D ++ + + Sbjct: 302 LARLMTVSRMESQALDLSPEPTDCAGLVTSALERLAPTAQARRVALSARLPDAPVSCVCD 361 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-- 169 ++LLNL P G VTI + ++ F + G E+ Sbjct: 362 PAHVQQVLLNLIGNGIKFSPEGSTVTIELLADESAATFRVSDTGPGIAQQEQELVFHKYY 421 Query: 170 --GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++D + + + R+ + S L Sbjct: 422 REPGMRHSVDGAGLGLAIARRIVEAHGGRMALDSEPGLGSTFSFTLP 468 >gi|229090971|ref|ZP_04222195.1| hypothetical protein bcere0021_17890 [Bacillus cereus Rock3-42] gi|228692372|gb|EEL46107.1| hypothetical protein bcere0021_17890 [Bacillus cereus Rock3-42] Length = 293 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 72/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 115 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ +G + Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 235 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 236 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288 >gi|254975375|ref|ZP_05271847.1| two-component sensor histidine kinase [Clostridium difficile QCD-66c26] gi|255092765|ref|ZP_05322243.1| two-component sensor histidine kinase [Clostridium difficile CIP 107932] gi|255314504|ref|ZP_05356087.1| two-component sensor histidine kinase [Clostridium difficile QCD-76w55] gi|255517181|ref|ZP_05384857.1| two-component sensor histidine kinase [Clostridium difficile QCD-97b34] gi|255650285|ref|ZP_05397187.1| two-component sensor histidine kinase [Clostridium difficile QCD-37x79] gi|260683401|ref|YP_003214686.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260686997|ref|YP_003218130.1| two-component sensor histidine kinase [Clostridium difficile R20291] gi|306520259|ref|ZP_07406606.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] gi|260209564|emb|CBA63181.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260213013|emb|CBE04341.1| two-component sensor histidine kinase [Clostridium difficile R20291] Length = 664 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 L ++++ L S + H+I +P+G I N+ LL + ++ ++ I + Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112 A + + + I + + + I ++ Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKMLQLKNVEIKIDCEHNLVCYING 554 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +NL + ++ + GK+ I + + K NG + I + Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGIKEDALKD-IFNPFY 613 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y +N + E + Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657 >gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 513 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 17 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 76 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 77 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 136 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 137 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 195 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 196 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 254 >gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 495 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 31/238 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRL 55 + + L + I HD+ +P+ AI E ++ + E Q I Sbjct: 254 LRRQEQARRE-------LLANIAHDLATPLTAIQGFSEALADDMIQDPAARQETAQRIGR 306 Query: 56 SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----S 103 + ++ + + + VIE V Sbjct: 307 EVQRLRRMVADLQQMTSLESGRTRLDLAPLSLHELIAETLAVIEPECEHAGIVVHNETRD 366 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARF- 160 S ++LLNL A P GG +T+ +S ++ G Sbjct: 367 DVPLVQADSDRVTQVLLNLLDNARRHTPVGGTITVGAHPGESGQSVEVWIEDTGVGIDSA 426 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + V + + ++ +S L Sbjct: 427 DLPHIFERFYRADRSRTGATGGSGLGLSIVRAIITAHGGKVWARSTPGKGTRISFSLP 484 >gi|289578187|ref|YP_003476814.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] gi|289527900|gb|ADD02252.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] Length = 451 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64 L + S I H++ +P+ + + +E + + + +L L+ + Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWQPTYERLKSLNEEVLRLINIVKDLETLN 291 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++L + + + + + + + A++ + Sbjct: 292 KFESDMLKLKKIKFNVSELVKNILTNFEASFVEKEQEVVKNIEDNIMLLGDKDRIAQVFV 351 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKEGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRK 411 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + ++ E + + + Sbjct: 412 TGGSGIGLSIVKAIVLAHGGKINVESEINKGSKFTVRIP 450 >gi|256783166|ref|ZP_05521597.1| two component system histidine kinase [Streptomyces lividans TK24] Length = 508 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 29/240 (12%) Query: 1 MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----------V 43 MA+ + + +L L + + H++ +P+ A+ E+LDE Sbjct: 265 MAETLER--DAAELRRLEAGARRFAADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTE 322 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + +R + ++ R + VD + Q+ R Sbjct: 323 DAVRLISEEVRTLTRMVEDLMEVSRFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVR 382 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + R +L NL A VT++V+ S + ++ G Sbjct: 383 ADLPEPAPVRVDPRRIDVVLGNLVANALHHGG--PPVTVAVRVSDDRVRVTVTDRGPGIP 440 Query: 160 F---PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + A + L V + L + Sbjct: 441 DDALPYVFDRFYKADAARPRSGGSGLGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 500 >gi|297544468|ref|YP_003676770.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842243|gb|ADH60759.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 461 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64 L + S I H++ +P+ + + +E + + + +L L+ + Sbjct: 242 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWQPTYERLKSLNEEVLRLINIVKDLETLN 301 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++L + + + + + + + A++ + Sbjct: 302 KFESDMLKLKKIKFNVSELVKNILTNFEASFVEKEQEVVKNIEDNIMLLGDKDRIAQVFV 361 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 362 NLISNSNKYTPVGGKIKIDFYKEGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRK 421 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + ++ E + + + Sbjct: 422 TGGSGIGLSIVKAIVLAHGGKINVESEINKGSKFTVRIP 460 >gi|241666814|ref|YP_002984898.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862271|gb|ACS59936.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 631 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 63/231 (27%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIED--------EVMQL 52 +L+ L S I H++ P+ AI N+ E LL + ++ + Sbjct: 393 EAVHLNQSATAGALSSSIAHELNQPLSAIRNNAEAASVLLRSANPDHGLIQQILLDIQED 452 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGE 107 + + ++ L + I A + + ++ Sbjct: 453 DQRAGDIISRMRGLLKKRSEIDWQEFDLNDVTSSAIHIIHGEAERRGITLTSTQPPGELP 512 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEK 163 +++LNL A ++ ++ + + + G+ E+ Sbjct: 513 VRADKVHVQQVILNLATNAMDAMLDAVPAGRTLTFATGLANEKAELRVSDTGDGI-PEER 571 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + + V L Sbjct: 572 LIRIFEPFYTTKQAGTGLGLSIARAILETYGGTIRADNRPEGGAVFRVALP 622 >gi|158339446|ref|YP_001520623.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158309687|gb|ABW31304.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 496 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 12/202 (5%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 H++ +PI + LEL+ D+ ++E ++L+ + M R F Sbjct: 287 HELRTPITIVRGHLELMGDDPKEQEETIELVLDELDRMGRLVNDMIALTKSERPDFLQYE 346 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 +D + ++ + D ++Q++ + + + LLNL A P G Sbjct: 347 MIDLNQFMDELFTKAQALADRDWQLQLNCSSSMMGDRQRLTGALLNLLRNATQHTPASGT 406 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHDIQFYYVILLAHE 192 + + + + ++ IF +K NG E+ +I D D + V Sbjct: 407 IELGCKQTFSQVIFWVKDNGEGMTLEEQL-RIFDRFARLGKRQSDGSGLGLAIVKAFTKA 465 Query: 193 NKIRLLPEIIDDHNVVLSALLE 214 ++ ++ E + L Sbjct: 466 HRGKIDVESQPGRGSTFTITLP 487 >gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 907 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 57/239 (23%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + I H+ +P+ AI E++ + + + + + +A Sbjct: 366 LREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEVILKTELSAPQRNHLTVLNKAA 425 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SW 104 L + ++ L ++ + + Sbjct: 426 HSLLDLLNTILDFSRYESGKATLALSPFMLHAPFTQVHEMFLSAAAAKGLPLQLELAPDM 485 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 + +IL+NL A G + FS+ G Sbjct: 486 PRAVEGDEGKIRQILVNLVSNALKFTDTGNITITCKAFPAPSGRADICFSVSDTGIGIEK 545 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + DG+ T + LLA + + L Sbjct: 546 EKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLLADMMGGSITVRSAPRQGSTFTVCLP 604 >gi|332304524|ref|YP_004432375.1| integral membrane sensor signal transduction histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171853|gb|AEE21107.1| integral membrane sensor signal transduction histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 432 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 9/220 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 MAK I D ALL + I HD+ +P+ I + E+L + E V + ++ Sbjct: 212 MAKGIKQL---EDDRALLTAGISHDLRTPLTRIRLATEMLPEAQDWLKEGIVNDIEDMNE 268 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + SVD + D QV + + + + Sbjct: 269 IIDQFINYVRQDQQESMVSVDVNELIRDAVQVRNIEEHHNIHLHLKPIPTACMRRVALKR 328 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES 174 +L NL A ++ ++N FS++ G + F G+ Sbjct: 329 VLDNLIENAFRYGSEDIEIHSGYDKARNLLFFSIRDFGPGIPDTQIEGLFKPFTQGDKAR 388 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + ++ S + Sbjct: 389 GSLGSGLGLAIIKRIVDMHSGEVTLKNHPEGGLIASIFIP 428 >gi|325111013|ref|YP_004272081.1| histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324971281|gb|ADY62059.1| histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 242 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 19/227 (8%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSM 58 + L + H++ +P+ + +LE+L E E V Q + Sbjct: 16 ESLRREYEQMA-QLAGGLAHELRNPLSTVCLNLEILKEDLKEAETARERRVRQRVDSIRE 74 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKID 110 + + +T ++ D+ Q+ A + + Sbjct: 75 ECRRLEELLNEFLQFTRGLELTSEPTDLSQLVEKFIAFEKPQAAAAHVDISQHLASDLPP 134 Query: 111 LSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + + +L NL A ++P GG + + +G +I Sbjct: 135 VLLDTRQFKSVLENLTRNAIQAMPHGGVLEFQTYAKDGSVFLDIIDSGEGIPEK-NRGKI 193 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ E L Sbjct: 194 FSLFFSTKSAGSGLGLPTVRKIVEAHGGQITCESELGRGTRFQIELP 240 >gi|291279768|ref|YP_003496603.1| two-component sensor histidine kinase [Deferribacter desulfuricans SSM1] gi|290754470|dbj|BAI80847.1| two-component sensor histidine kinase [Deferribacter desulfuricans SSM1] Length = 457 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 17/226 (7%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 KN+ + L +L L I H+I +P+ +LEL+ + +D + + Sbjct: 233 KNVAL---NEKLTSLGRLAMGIAHEINTPLTNASLTLELIRKRIPQDSKLLDKLSMLEAN 289 Query: 61 II---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I L + I + + V + + + Sbjct: 290 IDRASLIAKELLLFSKDDNLDFQDIKIENIINNSLMFIGNHKRYRQIVVFIKENCDIECI 349 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++++NL + A ++ G + I K F + NG E ++ D Sbjct: 350 PHKIEELIINLLLNAFDAIDDNGLIKIISNCDKEYIYFEIADNGTGI-SQEILDKVFDPF 408 Query: 172 VESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + Y + +K + + ++ L + Sbjct: 409 FTTKGPNFGTGMGLYICYNIVKLHKGEINIDSEVGKGTIVRIKLPR 454 >gi|229150218|ref|ZP_04278440.1| hypothetical protein bcere0011_17730 [Bacillus cereus m1550] gi|228633337|gb|EEK89944.1| hypothetical protein bcere0011_17730 [Bacillus cereus m1550] Length = 351 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + + +G + Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIHDSGIGILEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 346 >gi|153838733|ref|ZP_01991400.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810] gi|149747858|gb|EDM58738.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810] Length = 723 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+N S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 459 ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 516 Query: 62 IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ L + + + ++ + Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A G + +++ +F + G ++ Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + + L + + + Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691 >gi|297568257|ref|YP_003689601.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924172|gb|ADH84982.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 619 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------- 50 + + + + +VA+ L + + H+I +P+G I ++L+ Sbjct: 372 LQQELEKKIQQTEKMVAMGQLVAGLAHEINNPLGIIICYVDLVKRQPNLSPRALQDLEVI 431 Query: 51 -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVSWTGEK 108 + R L F R D + ++ ++ + + Sbjct: 432 GKQARGCKRIVGDLLDFARSGESRKQPADLNRIIEEVAGIVAPQFGKQGVAINLELAPGL 491 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPE 162 L + ++ LNL + A ++ G ++ NG + Sbjct: 492 PWLELDENKIKQVFLNLLLNARQAMQDEGGEIEIKSLLLAPSGPVRIEVRDNGPGIESED 551 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + E+ + + L Sbjct: 552 LS-KIFDPFFSTKRTGEGTGLGLSVSYGIVKEHGGEIRVASRIGQWTCFTIDLP 604 >gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 1499 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L S + + + H++ +P+ + LELL +G+ + + ++++ S Sbjct: 259 LKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGLTPKQREYVQVACNSG 318 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104 L+ + ++ L + +++ + V + Sbjct: 319 ETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAGQAQRKDLDLGYVVAKNV 378 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160 + +IL+NL A +G K +F +K G Sbjct: 379 PPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLEKTAKKLVLLFEVKDTGIGIPI 438 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + E + Sbjct: 439 EFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESKFGGGSRFWFTVP 497 >gi|322417612|ref|YP_004196835.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320123999|gb|ADW11559.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 486 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 12/225 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 +A+ + ++ L + H++ +P+G + N++ L D E + +I Sbjct: 244 LAQEDLVRQEKLSILGQLSGSLSHELRNPLGVMSNAVYFLKAVHADADETTKEYLGIIGS 303 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKID 110 ++ + M + + G++ + ++ + V V Sbjct: 304 EIANSQRIITDMLDFARTKPPKRTPVSPGELVRQSLKGCSIPENVTVAVAVQEEPPILNV 363 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L N + A ++ GG + ++ + +E S+ G PE ++ Sbjct: 364 DPLQMGQVLTNFIINAVQAMSNGGSLQLAARLIPGDEMEISVTDTGEGI-SPENRVKLFQ 422 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L N R+ E + L Sbjct: 423 PLFTTKPKGIGLGLVVCKNLVEANGGRIEVESEPGKGTTFTVKLP 467 >gi|205372509|ref|ZP_03225322.1| sporulation kinase B [Bacillus coahuilensis m4-4] Length = 298 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 68/221 (30%), Gaps = 10/221 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLI 53 K M+ + L S I H++ +P+ + ++LL++ + + + Sbjct: 76 KEEMLRAEKMNTMGELASSIAHEVRNPLTVVKGFVQLLEKNNSQKDHDYYSLIFSEIGKA 135 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + K + D + + + + V+ ++ Sbjct: 136 EGIISDYLNFAKPQFDKIERLHAGDIIEEVVSLMTPMAIAEGVEVYIETCEETYVYTDKD 195 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ +NL + + G KV I Q + NE ++K G E+ +I Sbjct: 196 KLKQVCVNLIKNSIEASSVGEKVLIGCQPTLNEVEITIKDEGKGM-TQEQLERIGTLFYT 254 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + ++ ++ + Sbjct: 255 TKDKGTGIGTMVTLRIVQSMNGKVSYTSEPGKGTTVTVRIP 295 >gi|332706881|ref|ZP_08426942.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354765|gb|EGJ34244.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 436 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + DL + + S + H+ +P+ I +S ELL+ + + R Sbjct: 180 LRQALNKEKELNDLKSRIVSVVSHEYRTPLATILSSTELLEHYSHKWSSEKKRRHFQRIQ 239 Query: 61 II------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + E V E + + + +++ Sbjct: 240 TTVQHLTKLVSDVLLFSKAEAGKLEFKPLPIDVVAFCKEIVEEFKLTANTGLTINFNCTN 299 Query: 109 IDLSRERA-----------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 +IL NL P GG + + S + +F + Sbjct: 300 NSKETSCCINQGWFEKADLDEKLLRQILSNLLSNGIKYSPDGGDIQFDLIMSDHSTMFRI 359 Query: 152 KINGNLARFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + +G PE ++ + S+ I + V + + + + Sbjct: 360 QDSGIGI-PPEDQERLFEAFQRSSNVGTISGTGLGLAIVKKCVNLHGGEICVDSEVGVGT 418 Query: 208 VLSALLE 214 + L Sbjct: 419 AFTVTLP 425 >gi|327189034|gb|EGE56220.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CNPAF512] Length = 802 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 49/236 (20%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRL 55 + + L L S H+ +P+ I + + L + E + Sbjct: 553 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLAEKAD 612 Query: 56 SSMSAI--------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S++ S+ +I Q Sbjct: 613 QIRSSVSRMLELMESILAAGRLDHGRITIVPKPCSIAEIIETCSARQESIRRSHRFLLKL 672 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ NLF A P V +S +++ G Sbjct: 673 DELPETIYGDRPALDQVFSNLFSNAVKYAPDSPNVHVSGWQEGERVCITVRDEGIGIDAD 732 Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + + + + + Sbjct: 733 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIP 788 >gi|315180645|gb|ADT87559.1| C4-dicarboxylate transport sensor protein [Vibrio furnissii NCTC 11218] Length = 602 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + DE + Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLASGKSERTDENLAR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEK 108 I + + ++ + S D+ V + ++ + Sbjct: 418 ISGLTERMAKISEQLKSFARKSSSDDTADVQLYPIVVYAKELMQPQFKSHYIDLNIQTPQ 477 Query: 109 IDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFP 161 + + ++L+NL A +L +++ ++ + + NG Sbjct: 478 APVWASVNPIQLEQVLINLLTNAMQALDGQESRCVAITLLSEEDGTLIHVDDNGPGL-GQ 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K + + + + + + L + L Sbjct: 537 DKIEHLFEPFFTTKQNGLGLGLSISQQIMQSMNGNLTASTSPLGGARFTIHLP 589 >gi|260768949|ref|ZP_05877883.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio furnissii CIP 102972] gi|260616979|gb|EEX42164.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio furnissii CIP 102972] Length = 602 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + DE + Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLASGKSERTDENLAR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEK 108 I + + ++ + S D+ V + ++ + Sbjct: 418 ISGLTERMAKISEQLKSFARKSSSDDTADVQLYPIVVYAKELMQPQFKSHYIDLNIQTPQ 477 Query: 109 IDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFP 161 + + ++L+NL A +L +++ ++ + + NG Sbjct: 478 APVWASVNPIQLEQVLINLLTNAMQALDGQESRCVAITLLSEEDGTLIHVDDNGPGL-GQ 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K + + + + + + L + L Sbjct: 537 DKIEHLFEPFFTTKQNGLGLGLSISQQIMQSMNGNLTASTSPLGGARFTIHLP 589 >gi|228985749|ref|ZP_04145899.1| hypothetical protein bthur0001_24390 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773921|gb|EEM22337.1| hypothetical protein bthur0001_24390 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 413 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 243 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 404 >gi|229156238|ref|ZP_04284334.1| hypothetical protein bcere0010_24270 [Bacillus cereus ATCC 4342] gi|228627113|gb|EEK83844.1| hypothetical protein bcere0010_24270 [Bacillus cereus ATCC 4342] Length = 413 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 243 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 404 >gi|168700932|ref|ZP_02733209.1| integral membrane sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 509 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 58/235 (24%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + K L + L + + I H++ +P+ I ++ + G + ++++ Sbjct: 258 LKKTERDALRAEQLAWVGQMAAGIAHEVRNPLTVIKLLVQAATDPRRANGFRPQDLRVLE 317 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV-----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + + +E V V+ + + Sbjct: 318 GEILRLEQIIRTFLDFARPPRPEKKSVAPAELIRDCVEGVTARAELQGVTVRAVVSSDLP 377 Query: 110 DLSRERAKILLNLFMVAHASLPRGG----------KVTISVQDSKNENIFSLKINGNLAR 159 L + ++ L+ + +L + G Sbjct: 378 PLDADPGQLGQVLYNLLFNALDVLPSGGTVRVTAAVTPDGTDTPGGTLTVLVSDTGPGLP 437 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI D + + + + + + V L Sbjct: 438 VG-LEEQIFDPFISTKETGLGLGLSICRRIVEAHGGSIGATNGPAGGAVFVIRLP 491 >gi|220916056|ref|YP_002491360.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953910|gb|ACL64294.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 530 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 57/221 (25%), Gaps = 19/221 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKF 66 +L + L S + HD+ +P+ AI + LL + G+ D ++ + + Sbjct: 288 EELRSGLLSSVSHDLRTPLAAITGAGTLLLDDGVNDPAIRRDLAATVVDEAERLERLVSN 347 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SWTGEKIDLSRERA 116 + G + + Sbjct: 348 LLDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAARPVAVAIPDELPLLSVDPILVQ 407 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-- 174 ++ +NL A P G ++ + + G E+ +I D + Sbjct: 408 QLFVNLLENATKHTPPGSEIAVRAAREGGMVAIEVADRGPGLPEGEE-ERIFDRFQRAAR 466 Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + RL V L Sbjct: 467 PGVRGVGLGLPIARAIAQAHGGRLTAANRAGGGAVFRLTLP 507 >gi|47569601|ref|ZP_00240278.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|47553716|gb|EAL12090.1| sensor histidine kinase, putative [Bacillus cereus G9241] Length = 422 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 413 >gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 675 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K+ S+ + + + + H+I +P+ + ++LL ++E + IR++ SA Sbjct: 279 LQKSRDEAESANRVKSEFLANMSHEIRTPLNGLVGMMDLLSRTDPDEEQQECIRMAKFSA 338 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 K + ++ S D L ++ ++ + + Sbjct: 339 NTLFKVIDGILDFSRIEAGKIAIAKISFDLKALLEEVIKIHTVLAEQKGLALEHDIPPDL 398 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160 +IL NL A RG I Q + E F + +G Sbjct: 399 PPYLTGDPDHLRQILNNLIGNALKFTDRGQIKVSVREIRHQGQQVELEFCVADSGVGISP 458 Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + V + LA + E V L Sbjct: 459 GKMDLLFKRFSQVDSSVTRRYSGTGLGLAICKQLAELMGGAIRAESEMGKGSVFRFTL 516 >gi|313606642|gb|EFR83405.1| heme sensor protein HssS [Listeria monocytogenes FSL F2-208] Length = 459 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + + Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTGKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLAEVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P GG + I + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPPGGNIQIHLYEEGTNVFVEVRDSGVGISKSDMAKIFE 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458 >gi|229178390|ref|ZP_04305759.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W] gi|229190088|ref|ZP_04317094.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876] gi|228593417|gb|EEK51230.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876] gi|228605120|gb|EEK62572.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W] Length = 351 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 68/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346 >gi|255655755|ref|ZP_05401164.1| two-component sensor histidine kinase [Clostridium difficile QCD-23m63] gi|296451013|ref|ZP_06892758.1| two component sensor histidine kinase [Clostridium difficile NAP08] gi|296879022|ref|ZP_06903019.1| two component sensor histidine kinase [Clostridium difficile NAP07] gi|296260144|gb|EFH06994.1| two component sensor histidine kinase [Clostridium difficile NAP08] gi|296429975|gb|EFH15825.1| two component sensor histidine kinase [Clostridium difficile NAP07] Length = 664 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 L ++++ L S + H+I +P+G I N+ LL + ++ ++ I + Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTGEKIDLS 112 A + + + I + + + I + ++ Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKILQLKNVEIKIDCEHNLVCYING 554 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +NL + ++ + GK+ I + + K NG + I + Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGIKEDALRD-IFNPFY 613 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y +N + E + Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657 >gi|332709210|ref|ZP_08429176.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332352019|gb|EGJ31593.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 431 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 72/239 (30%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRI----CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + +L V+ L SRI H+ +P+ I +S+ELL++ + Q ++ Sbjct: 186 LESQLRQSLEREKEVSDLKSRIIFTISHEYRTPLMTILSSVELLEQYRHKLTDSQQVKHF 245 Query: 57 SMSAIIRLKF------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 V + E ++ + ++ + Sbjct: 246 WRIQGAVKHMTTLVNDLLFINQAEFDKLEFQPVALNLVTFFQELFCPIQSSLGAKHRLLF 305 Query: 105 TGEKID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++ + +IL N+ A P GG + + + + + I + G Sbjct: 306 SSKRDWEPILGDPKIIRQILNNIISNAIKYSPDGGTILVQLNGDEEKVILQIIDQGIGIP 365 Query: 160 FPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + S + + V + ++ E + L K Sbjct: 366 KEDQPKLFESFSRASNVGIIPGTGLGLSIVKSCVDSHGGKIHVESEVGVGTTFTITLPK 424 >gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 811 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLS 56 M + + + + I H++ +P+ AI EL G E + + + Sbjct: 568 MREARDIAEEASRAKSEFIANISHELRTPLQAIIGFSELGMVRGRAHERLASMFGDIHAA 627 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104 + + + + D + ++ + I+ +A + Sbjct: 628 GQRMLALVNDLLDVSKIESTVGTFHLERTDLRPLVREVAREIDPLLARRRLHLDLALSEG 687 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEK 163 +++ N+ A P G +T+ N+ + +++ +G E Sbjct: 688 PLVAKVDPMRFQQVVRNVLANAVRFSPDGETITVRGDVDARNQIVVAVRDHGPGIPPGEL 747 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + E D + + Sbjct: 748 EKIFEAFVQSSKTKDGSGGTGLGLAICRKIVEAHGGSIQAENADGGGSRFTIAVP 802 >gi|288871250|ref|ZP_06410080.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479] gi|288864174|gb|EFC96472.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479] Length = 720 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + +L +++ QL Sbjct: 479 KEQAAVLAKNEQLRANLLRAISHDLRTPLTSISGNAGVLLANDTVIPQEKRRQLYGDIYD 538 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 ++ + + T D + L ++++D +A + E + Sbjct: 539 DSLWLINLVENLLAVTRIEDGSMNLRLKPELMDDVVAEALHHINRKSVEHHITVAQSNEL 598 Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++N+ A P+G +T+ S + + + NG E Sbjct: 599 ALARMDGRLIVQVVINIVDNAIKYTPQGSTITVRTFTSGDWVVTEISDNGPGI-SDEVKL 657 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D S+ S + + + + + V L Sbjct: 658 RIFDMFYTSSTKIADSRRSLGLGLALCKSIITAHGGTIEVRDNEPEGTVFCFTLP 712 >gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 655 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56 K+I + + S + H++ +P+ +I SL LL ++ + + Sbjct: 420 KDITERQAMEKMKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPEKSQRMLDIAMFN 479 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTG 106 + + L ++G + ++ ++ + Sbjct: 480 CDRLMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGVDLCVIPLEF 539 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++L NL + ++ + + +N+ + S++ G + T Sbjct: 540 KVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENDVLISVRDRGRGIPPDKIETI 599 Query: 167 IVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E I L Sbjct: 600 FGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGAGSTFFVSLP 652 >gi|15602296|ref|NP_245368.1| PhoR [Pasteurella multocida subsp. multocida str. Pm70] gi|12720684|gb|AAK02515.1| PhoR [Pasteurella multocida subsp. multocida str. Pm70] Length = 431 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 18/232 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+++ + + S I H++ +P+ + LELL+ + Q + + Sbjct: 191 ARDVTQMIRLLHSRQTFLSNINHELRTPLTVLQGYLELLEAEKDHSALAQKAIHAMQAQS 250 Query: 62 IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEK 108 R+ + VD + ++++ ++ Sbjct: 251 QRMANLLQQLNVLAKIESSSNQEHEPVDMSRLILNLKENAHFLNHYHHQIHFDIAPDIYV 310 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---T 165 + + NL A ++ +S Q FS+ NG + Sbjct: 311 FGDESQLQSAVSNLIYNAIKHSGENCQINVSWQLCAEGAKFSVTDNGIGIATHHLYHLTE 370 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + H + V ++ +L E + S ++ K Sbjct: 371 RFYRVDESRSNQTGGHGLGLAIVKHALEQHHAQLEIESKEGEGSCFSFIIPK 422 >gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 1002 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 55/239 (23%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I +P+ AI +LEL++ + E + ++ S+ Sbjct: 507 LREAREAADDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAPLPAEERRRLQTVMSSS 566 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 D + D+ + A R+ Sbjct: 567 DALLRVINDVLDLSKVESNQMVLEAVPFDLRAVVRDVAAIFHPLAAARHLALECRIDPQL 626 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160 + +I+ NL A RG + ++ G Sbjct: 627 ADGYVGDPTRLRQIVSNLVSNAIKFTERGSVTIEARPTGTVGQARGVEVVVRDTGIGIAP 686 Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + LA L E L Sbjct: 687 ESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVESRPGQGATFIVSLP 745 >gi|301059368|ref|ZP_07200295.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300446597|gb|EFK10435.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 571 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 26/234 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 +N+ L S + H++ +P+ +I ELL + + +Q+I S Sbjct: 340 RNMKDALQKTS----FVSNVSHELKTPLTSIRMYAELLFEGRIKDPDKKKTYLQVIVSES 395 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEK 108 + + + +D L ++ + + GEK Sbjct: 396 QRLTRLVNNVLDFSRLEQGRKTYHPQKIDLNEFLMEVVDSHRLRIKEAGMTIDTHFLGEK 455 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I ++ +R ++ +NL + G +V +SV + + ++ G ++ Sbjct: 456 IFVNADRDAIEQVFINLIDNSIKYAGPGIEVVVSVNKNGKDCEIRIEDRGPGVPEADRHK 515 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + ++ + L+ E D L Sbjct: 516 IFEKFHRVDDTLTSKQQGSGLGLSIARKISRDLGGNLVYESRDGGGSCFIVRLP 569 >gi|322419614|ref|YP_004198837.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126001|gb|ADW13561.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1264 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 67/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 K + L + + A+ L + HD + + I ++L ++++ Sbjct: 881 RKKLEEQLRQAQKMEAIGQLAGGVAHDFNNILTVILGFGQMLQHSLPPDDPLRDHMEQIL 940 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R V+ + + I D ++ S++ E + Sbjct: 941 DAGDRATHLTRSLLAFSRKQVMVMQQVELNELTRRHAKFLVRIIGEDVSLKASFSKEPLL 1000 Query: 111 LSRERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLK 152 + + ++ L A ++P + + ++ Sbjct: 1001 VMADSGQLEQVLMNLATNARDAMPGGGELTIKTESVTLDKEFHRQYGYGMPGRYALVTVT 1060 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E +I + + + + V + ++ + S Sbjct: 1061 DTGTGM-DAETQQKIFEPFFTTKLPGRGTGLGLSIVYGIIKQHGGYITIFSQRGFGTTFS 1119 Query: 211 ALLE 214 L Sbjct: 1120 IYLP 1123 >gi|229160391|ref|ZP_04288389.1| hypothetical protein bcere0009_11850 [Bacillus cereus R309803] gi|228623115|gb|EEK79943.1| hypothetical protein bcere0009_11850 [Bacillus cereus R309803] Length = 402 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLANVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKYIQLYIKDTGIGM-DTEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|118581413|ref|YP_902663.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118504123|gb|ABL00606.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 953 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M + + FN +D + LL I HD + + +I ++ L E + + Sbjct: 569 MEEEL-FNARKLDSIGLLAGGIAHDFNNLLTSILGNISLTRMQVGEGDRLRRNLDEAEKA 627 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 S+ A + + V + L I + F R + + Sbjct: 628 SLRAKDLTQQLLTFSRGGAPVRKTVSLTAIIRDSATFTLSGSRTTCRFQIPDDLYPVDVD 687 Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLAR 159 ++++ NL + A ++P GG++ I + S++ G Sbjct: 688 EGQFSQVINNLVLNADQAMPAGGEIEIVCANVTLARESHLPLPAGAYVRISVRDRGEGI- 746 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + V + + + + L Sbjct: 747 PEELVPRIFDPYFTTKKEGKGLGLATVYSIIRNHDGHISVSSSPGQGTAFTIHLP 801 >gi|117925093|ref|YP_865710.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608849|gb|ABK44304.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 871 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 26/238 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 +N M+ V L I HD + + AI EL + + +Q + + Sbjct: 489 ENQLRQARKMEAVGTLAGGIAHDFNNILSAILGFTELTFNQVPQESRAYRNLQQVYDAGN 548 Query: 59 SAIIRLKFMRLAFGY----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A +K + ++D + + D ++ + ++ ++ + + Sbjct: 549 RARDLVKRLLDFSRPSDVGMVAMDPITVIRDALTLLRATLPSSIQIITDIPKMELLVRAD 608 Query: 115 RAKILLNLFMVAHASLPRGGKVT-----------------ISVQDSKNENIFSLKINGNL 157 ++ + + + K + N S++ G Sbjct: 609 PTQLQQVMMNLCTNAARAMRKDQGGSLTVTVKRQEIREELPNALHKGNYICISVQDTGCG 668 Query: 158 ARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V + H++ + E V L Sbjct: 669 IPTHHLEHIFDPFFTTSKLGEGTGLGLSVVHGIVHKHGGTVTVESEIGVGSVFRVYLP 726 >gi|253568196|ref|ZP_04845607.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] gi|251842269|gb|EES70349.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] Length = 499 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ F +I + + + + + Sbjct: 320 NSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKEQTMKPISEIEIRASLPNE 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ N A + ++ G+ Sbjct: 380 DVYINTDATRLKQVISNFINNARKFTEKGYIHFGYAVDSVDASSVHVFVEDTGSGIPKEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + E + L Sbjct: 440 QKEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDIFVESETGKGSRFTVTLP 492 >gi|198245723|ref|YP_002218089.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205357423|ref|ZP_02347567.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197940239|gb|ACH77572.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321829|gb|EDZ09668.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 465 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ NG + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 584 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 59/227 (25%), Gaps = 25/227 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLK 65 + + + H++ +P+ I E L + + + +I+ + ++ Sbjct: 356 EKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPERAERFLLIIQNHADRLSGLVR 415 Query: 66 FMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSR 113 + + + + I Q + + V Sbjct: 416 DLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRG 475 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 ++L+NL A G V + + S++ +G + ++ + Sbjct: 476 RLEQVLINLLDNAIKYSETGKSVGVETAREGDLVRVSVRDSGIGIPEKDLP-RLFERFYR 534 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L + V S L Sbjct: 535 VDEARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLP 581 >gi|156742625|ref|YP_001432754.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156233953|gb|ABU58736.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 637 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 63/241 (26%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + + MD + L + HD + + I EL L + + I+ ++ Sbjct: 259 EERLLQMQKMDALGRLSGGVAHDFNNLLAVIAGCTELARQSLPDDHPAMLELIEIQHATE 318 Query: 59 SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + + +D + D+ +++ I D + + + + Sbjct: 319 RASALTRQLLAFAHRQKFDPRPIDLNALIQDMHKLLRRLIREDITLHTRLAPDLWHVRAD 378 Query: 115 RAKILLNLFM---VAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156 +I L A ++ + + ++ G Sbjct: 379 PGQIEQVLVNLAVNARDAMAVGGALTIATTNVVADEAFERRYPSLKAGEYVCLTVSDTGI 438 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + + + + + V++ L Sbjct: 439 GM-DEETRRRAFEPFFTTKKPGEGTGLGLATCYGIVTRHGGAIDLASEPGCGTVVTIYLP 497 Query: 215 K 215 + Sbjct: 498 R 498 >gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] Length = 1692 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 27/221 (12%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78 + + H+I +P+ AI LL + E + S L+ + + + Sbjct: 1105 ANMSHEIRTPLNAIIGMSGLLLRTNVTPEQRSYVSAIQSSGNALLEMLADILDLSRIEEG 1164 Query: 79 ---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + E I + + + + ++L+NL Sbjct: 1165 KLELDSSTFSILECVETCIDILSVKASEKQIELAYLIDEDVPELVLGDATRLRQVLVNLL 1224 Query: 124 MVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173 A RG + + +E F ++ G PEK ++ + Sbjct: 1225 ENAIKFTERGEVFLRVICQYMDEDLSELHFFVRDTGIGI-PPEKMDRLFHTFSQVDSSIT 1283 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L R+ E I ++ Sbjct: 1284 RRYGGTGLGLAISKHLVEMMGGRIWAESIPGAGSTFHFTIK 1324 >gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 703 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 57/238 (23%), Gaps = 26/238 (10%) Query: 3 KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + + + +L + + H+I +P+ AI LL Q + Sbjct: 318 RELTQARRKAEEASLAKTEFLANMSHEIRTPMNAIIGIGTLLAMSQPLTARQQEFVKTLN 377 Query: 58 -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQ 101 L ++ + L I + + V R + Sbjct: 378 VSAKGLLELINDLLDVAKIEAHTVELEEVPFSLEQILLEVASMMTVRSREKGLTFTTAID 437 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +I+LNL A GG +++ S++ G Sbjct: 438 SIRGRTFAGDPMRLRQIVLNLCSNAVKFTQTGGVEIRVACGAEDSVAISVRDTGIGIAPE 497 Query: 162 EKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T ++ + LA + + H + L Sbjct: 498 NLSTIFDKFVQADNSISRKYGGTGLGLAITRNLAELMGGAIAIDSQPGHGSTFTVTLP 555 >gi|320104022|ref|YP_004179613.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319751304|gb|ADV63064.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 482 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 75/236 (31%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L + A LL + I H++ +P+ AI + +++L + + + L Sbjct: 215 LRQAQARTLHQEKMAAFGLLAAGIAHEVGNPLTAISSLIQMLRRKHDDPATAEKLDLIGN 274 Query: 59 SAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107 I +R G++ V + D + + + R+ Sbjct: 275 QVIRIQTILRELVGFSRPASTLETPVQLREVVADALSIAKYYHQFKNRIIETDLPDDLPR 334 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------SKNENIFSLKINGNLA 158 + + +++LNL M A + +GG++ S + + + + +G Sbjct: 335 VRAVKDKLVQVVLNLTMNALDATGKGGRILWSARVVAEGDATGSQASGLVLRVDDDGPGV 394 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + + + + E + E L Sbjct: 395 PQAEIPL-LFEAHHTTKRQGTGLGLFVCRGIVEELGGTITYEPGSLGGAGFVVRLP 449 >gi|229100783|ref|ZP_04231606.1| hypothetical protein bcere0020_59380 [Bacillus cereus Rock3-29] gi|229107179|ref|ZP_04237165.1| hypothetical protein bcere0019_57460 [Bacillus cereus Rock3-28] gi|228676272|gb|EEL31131.1| hypothetical protein bcere0019_57460 [Bacillus cereus Rock3-28] gi|228682633|gb|EEL36688.1| hypothetical protein bcere0020_59380 [Bacillus cereus Rock3-29] Length = 811 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 67/226 (29%), Gaps = 15/226 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58 K S L L + I H+I +P+ A+ ++LL + + ++ Sbjct: 583 KTEELLRKSEKLAVVGQLSTAIAHEIKNPLTAMKGFIQLLQSLGNKDTEHYIDIVLSEIE 642 Query: 59 SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKID 110 D + + + ++E ++ S T + Sbjct: 643 RIDSITNEFMTLAKPEALEIKTNDLNVLMKQVVMLLEPQATMNCIQIKTQFTSDTSFILC 702 Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ +N+ A + GG++ I +N+ G E+ + Sbjct: 703 ECNQLKQVFINILKNAIEATSMGGEILIQIQYAPDQNQVNIRFTDYGCGI-EQERIPYLG 761 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +++ ++ E ++ L Sbjct: 762 EPFYSLKENGIGLGLMICYKIIEKHQGKIFIESEVGKGTTVNIDLP 807 >gi|258511694|ref|YP_003185128.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478420|gb|ACV58739.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 590 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 62/218 (28%), Gaps = 24/218 (11%) Query: 20 SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM------- 67 + + H++ +P+ + E L D+ + E+ ++I ++ + + Sbjct: 360 ANVSHELRTPLSMLQGYTEALLDDISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLE 419 Query: 68 -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLN 121 + VD + + + + + + + + + + ++ N Sbjct: 420 SGQFKLHFARVDLTQVMRRVARKFQALASDEDHLTFEVSIPDHPVMVDGDEDRLEQVFTN 479 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 L A +G + G+ + F + + + Sbjct: 480 LLDNAFRHTAQGTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFERFYKADKARTRSR 538 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L E++ +L E + +L Sbjct: 539 SGTGLGLAIARQLVIEHRGEILVESHLGEGTTFTVVLP 576 >gi|161505339|ref|YP_001572451.1| sensor protein ZraS [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866686|gb|ABX23309.1| hypothetical protein SARI_03484 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 487 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 262 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 321 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 322 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 381 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 382 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 440 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 441 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 480 >gi|172059032|ref|YP_001815492.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991553|gb|ACB62475.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 616 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ + + LE L + + ++ + + I + + Sbjct: 389 FVANVSHELRTPLTTMRSYLEALAEGAYQDEELAPRFLETTQNETERMIRLVTDLLQLSK 448 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-----ILLN 121 V + + + +R++ K + + + N Sbjct: 449 MDSKEYKMNKVRFDYIQFLNDILDRHDMTKPERIRFRRKIMKRKVYIRGDQDKLIQVADN 508 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTI 176 + A P GG +T+ + S+K G + F + + I Sbjct: 509 ILTNAIKYSPEGGTITVRTMLRAKRIVISIKDEGVGIPKANLQKIFERFYRVDKARARKI 568 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 569 GGTGLGLSIAKDVVSAHGGDIWAESEWGRGTTIYFTLP 606 >gi|328954529|ref|YP_004371863.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328454853|gb|AEB10682.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 824 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 19/231 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57 K + L S L A+ L + + H+I +P+G I L L+++ + Q + Sbjct: 584 KKRLEDQLARSEKLAAVGQLSAGVAHEINNPLGGILVYSYLMLEDLAPDRPERQQVEKII 643 Query: 58 MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109 A L F R VD L ++ + D ++ E Sbjct: 644 REATRCKEIIKGLLDFSRQQPFRLKPVDLNSMLAELLSLVENHLNFQDVGIKKKLAPELP 703 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFT 165 + ++ K+ + + + + + NG PE Sbjct: 704 PVLGDKNKLEQVFINLFMNASHAMAGHGVLTVATGQNVLGAVEIRVSDNGPGIH-PEHLH 762 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + +++ R+ + L Sbjct: 763 RIFDPFFSTKEVGRGVGLGLSISYGIIKQHRGRIYVDSTAPGGATFVIELP 813 >gi|298243981|ref|ZP_06967788.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297557035|gb|EFH90899.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 415 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + + ++ + + S H + +P+ +I E+L D+ V+ L+R Sbjct: 179 LERAEELQHAAEERFSRFFSDASHQLRTPLTSIRGFTEVLLRGAKDDPETAQRVLTLMRN 238 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------- 108 + + + + D+ ++++ I + + Sbjct: 239 EGERMTALINNLLTLSRLSEHQPLKMQYIDLLDLVKESIEQARTQATDDRRMQISLRGEA 298 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162 ++L L A + +I+VQ + + + NG E Sbjct: 299 PFGLQANKERIKQLLYILLDNAVKHGMPAPEGSITVQLTKREQQIEVHVIDNGPGIAEDE 358 Query: 163 KFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + D + +L Sbjct: 359 LKHIFEAFYHGQHQRTPGSGLGLAIAAAIVDAHQGHITVQRTPDAGSDFTFMLP 412 >gi|258625376|ref|ZP_05720273.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus VM603] gi|258582367|gb|EEW07219.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus VM603] Length = 597 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLTR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103 I + + ++ + S + + + + + +V Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + I +Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALDGQAERLVQIRLQISEQQVQIFVDDNGPGIGL- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + + + + + H + L L + Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIISLPR 590 >gi|153854057|ref|ZP_01995390.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814] gi|149753439|gb|EDM63370.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814] Length = 470 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + HD SP+ +I +E + + + ++ +++I + + + + Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAMTDGTIPPELHEKYLKIILFETERLTDLTQDLLTLNEF 308 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWTGEKIDLSRERAKILLN 121 + L + +A V + R+ ++L N Sbjct: 309 DTNHLLLNREVFDIHEMIKHVAASFEGVCTQKKISIELVFATKHLNVNADKRKIQQVLYN 368 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177 L A VTI D + S+K NG + + ++ D Sbjct: 369 LLDNAIKFSDPNSIVTIETTDRGEKVYTSVKDNGMGIPRSALGKIWERFYKSDLSRGKDK 428 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + S L K Sbjct: 429 KGTGLGLAIVKEAIQAHGENITVVSTEGVGTEFSFSLPK 467 >gi|163848872|ref|YP_001636916.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526828|ref|YP_002571299.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163670161|gb|ABY36527.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450707|gb|ACM54973.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1043 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIR 54 + M+ + L I HD + + I ++EL D Q Sbjct: 659 QTQLLQAQKMEAIGQLAGGIAHDFNNILTVITGNVELAMLEIAPDHPIYPELESVRQSTA 718 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +S L F R G ++ + DI +++ I +++ ++ + Sbjct: 719 RASELVRQLLTFARRQPGQPKPINVNHQINDIMNMLKRIIGEHIHLRLELCEPIDSINID 778 Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKINGN 156 + +L+NL + A ++P GG++TI + S+ G Sbjct: 779 PHQFEQVLMNLVVNARDAMPNGGELTIRTSMQYVEAGNIPAFSQAKAGKYVLLSVCDTGI 838 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + ++ + + L Sbjct: 839 GIDET-IRGHIFEPYFTTKPMGKGSGLGLAICSGIVTQHGGFFTVDSQPGAGSCFTVALP 897 >gi|319951281|ref|ZP_08025116.1| two-component histidine kinase PhoR [Dietzia cinnamea P4] gi|319435054|gb|EFV90339.1| two-component histidine kinase PhoR [Dietzia cinnamea P4] Length = 487 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 57/210 (27%), Gaps = 18/210 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 HD+ +P+ I EL + +D M+ I + + ++ + Sbjct: 275 HDLRTPLTTIRGFAELHRQGAADDTDRLMRRIESEARRMGVLVEDLLTLARMDEQRPIAR 334 Query: 82 GLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFMVAHASL 130 D+ + D + + + T E + ++L NL A Sbjct: 335 DRVDLLALAADAVHDARVLAPDRTVGLEVIDGPGTPEVLGDEVRLRQVLGNLVDNALRHT 394 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYY 185 P G +T+ V ++ + + G E S+ + Sbjct: 395 PPGVPMTVRVGTEADDALLEVADAGPGMTADEAERAFERFFRADASRTSSTGGSGLGLAI 454 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L + + E L + Sbjct: 455 ARSLVEAHDGSVTVETAPGRGATFRVRLPR 484 >gi|315658231|ref|ZP_07911103.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590] gi|315496560|gb|EFU84883.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590] Length = 588 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 62/237 (26%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + D +A+ + H++ +PI + E + + E + ++ Sbjct: 355 MTNEHNLDQMKKDFIAI----VSHELRTPISLLQGYTESIVDGIVTEPEEIKESLSIVLD 410 Query: 56 SSMSAIIRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + Q D + Sbjct: 411 ETNRLNRLVNELLNVARMDAEGLSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPET 470 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 S ++L NL A G ++I+ +D+ N+ + G+ Sbjct: 471 NDALWYYDSDRIDQVLTNLIDNATRYTQPGDTISITSEDTDKYNVLHINDTGSGIAPEHL 530 Query: 163 --KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + ++ E+ + + + L K Sbjct: 531 NLVFDRFYKVEASRTRGKQGTGLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587 >gi|323343405|ref|ZP_08083632.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella oralis ATCC 33269] gi|323095224|gb|EFZ37798.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella oralis ATCC 33269] Length = 880 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + ++ L + I H++ +P+ I + +E + + + + Sbjct: 360 MKRRMEEEATNAKL--QFFTNISHELRTPLTLIADPVEHIIDDENLTRQQRTMLQIVRRN 417 Query: 61 IIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWT 105 + L + + D + + + K+ ++ S Sbjct: 418 VNILTRLVGEILDFRKIQNGKMTLTLSDFNLSDCLKQWIDVFAATARKKKIALELECSDD 477 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +I NL A GG++T+ ++ + G E Sbjct: 478 IRMRADIYKVERICYNLLSNAVKFTQEGGRITLKAATDGDKVSICVTDTGMGIAKDELS- 536 Query: 166 QIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + I V A + + + + + L Sbjct: 537 RIFERFYQVKDSYGGGTGIGLAIVKSFAELHHGTAVVDSEEGKGTTFTVTLP 588 >gi|253577341|ref|ZP_04854658.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843241|gb|EES71272.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 632 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 73/224 (32%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQL 52 K S L V L + + H+I +P+ + L++ + + Sbjct: 393 KMEDLLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQMQQRTRVVNVMHTDVMLAELDR 452 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDL 111 I L +I K + F ++ + + ++ V S + Sbjct: 453 INLIVSEFLILAKPQAVQFQIKDVRFTMGDVVSLLDSEAHLHNIEFEVHFSPSPVLVHCE 512 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +NL A ++P+GGK+ + V++ + + + G ++ ++ + Sbjct: 513 ENQLKQVFINLLKNAMEAMPKGGKILLQVEEDDSGFAVLRVIDEGEGI-SKDRLQKLGEP 571 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ L E ++ L Sbjct: 572 FYTNKEKGTGLGLMISQRIIEGHRGTLKIESELGKGTAVTITLP 615 >gi|237802074|ref|ZP_04590535.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024930|gb|EGI04986.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 263 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 24 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 83 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V + + Sbjct: 84 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 143 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 144 GDPQRLAQVLINLLSNARDASPAGSTVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 202 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ +++ + D + L + Sbjct: 203 PFFTTKDPGEGTGLGLALVYSIVEEHYGQIIIDSPADPEQQRGTRIRVTLPR 254 >gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 778 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S+ + S + H++ +P+ AI LL + ++DE I++ S+ Sbjct: 261 LRTAMEKAQSANKAKSEFLSTMSHELRTPMNAIVGMSSLLMDKDLDDERQSYIKIIRSSS 320 Query: 61 IIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSW 104 L + ++ G+ D L + + D +A +R + Sbjct: 321 DALLSLINDVLDYSKIESGHLDLEDQPFNLVNCLEEAMDIVAAPRRDAPIDFIVTIDPKL 380 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLAR 159 ++L+NL A +G + ++ G Sbjct: 381 PAIVKGDVTRLRQVLINLLGNAVKFTQKGHVWLEAKCCVVGESENVFASIAIHDTGIGI- 439 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ ++ + + LA + E + Sbjct: 440 PDDRKHRLFQTFSQVDSSMTRRFGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTI 499 Query: 214 E 214 Sbjct: 500 P 500 >gi|163814592|ref|ZP_02205981.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759] gi|158450227|gb|EDP27222.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759] Length = 528 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA + + S I HD SP+ +I +E + + ++ + ++ Sbjct: 255 MADELSRSNEYRKS---FISNISHDFRSPLTSIKGYIEAMLDGTIPLERHEKYLGIVLNE 311 Query: 57 SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSW 104 + + + S + DI + + V ++ Sbjct: 312 AQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTVNTFEKRCQDRGIFLESVFLTD 371 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FP 161 + +++ NL A P G ++ + V + N+ S+K G Sbjct: 372 NTIVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIFISVKDEGIGIPKDAQK 431 Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + D + + + ++ + L K Sbjct: 432 KVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGKGSEFIFSLPK 487 >gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 631 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 68/241 (28%), Gaps = 30/241 (12%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 +++ +L +L S + H++ +P+ +I EL+ + + Q + Sbjct: 391 EELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKGYTELIYDESLGTLSEQQKEVEKT 450 Query: 58 -----MSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + I ++ + V+ Sbjct: 451 VLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIVEIVEMTLQDLKIQIEEKKLAVEKD 510 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++ +R K+ L + P GG + ++++ LK NG Sbjct: 511 IPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSLKFTIKEEDEFIHIVLKDNGIGIPP 570 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + Y + +K ++ E ++ + L Sbjct: 571 DMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIVTAHKGKIWVESKGENKGTEMHIQLP 630 Query: 215 K 215 K Sbjct: 631 K 631 >gi|289767047|ref|ZP_06526425.1| two component system histidine kinase [Streptomyces lividans TK24] gi|289697246|gb|EFD64675.1| two component system histidine kinase [Streptomyces lividans TK24] Length = 501 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 29/240 (12%) Query: 1 MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----------V 43 MA+ + + +L L + + H++ +P+ A+ E+LDE Sbjct: 258 MAETLER--DAAELRRLEAGARRFAADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTE 315 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + +R + ++ R + VD + Q+ R Sbjct: 316 DAVRLISEEVRTLTRMVEDLMEVSRFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVR 375 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + R +L NL A VT++V+ S + ++ G Sbjct: 376 ADLPEPAPVRVDPRRIDVVLGNLVANALHHGG--PPVTVAVRVSDDRVRVTVTDRGPGIP 433 Query: 160 F---PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + A + L V + L + Sbjct: 434 DDALPYVFDRFYKADAARPRSGGSGLGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 493 >gi|322421916|ref|YP_004201139.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320128303|gb|ADW15863.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 763 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 70/233 (30%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSS 57 +++ L L A+ + + I H++ P+ +I L ++ L Sbjct: 530 LSEAQESLLQKERLAAIGEMAAGIAHELKGPLVSIGGFANRLARKLPQESGERAHADLIV 589 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDL 111 I + ++ +I +++ + +K++ V + Sbjct: 590 REVIRLEGILSEILLFSKKTTICYTRCNIVEIVRESLAVVTPPLEEKQITVDTKFPRQRQ 649 Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 ++ ++ +N+ + A ++ GG + I V S+ + + G + Sbjct: 650 VLLGDSQQLKQVFINIILNALDAMGSGGNLAIQVLSSELDGKEAVTVKIADTGGGIPLEQ 709 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + ++ V +L K Sbjct: 710 LN-HIFTPFFTTKESGTGLGLPIANRIIINHGGKIQITNHPGEGVEFRVILPK 761 >gi|228998390|ref|ZP_04157981.1| hypothetical protein bmyco0003_29520 [Bacillus mycoides Rock3-17] gi|228761311|gb|EEM10266.1| hypothetical protein bmyco0003_29520 [Bacillus mycoides Rock3-17] Length = 481 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52 + K S L L + I H+I +P+ A+ L LL E ++ Sbjct: 243 LKKTEKLLRKSEKLAVVGQLTAGIAHEIRNPLTALKGFLTLLQPDISEQNKWYIDVMLSE 302 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + S + ++ ++ I + + ++ Sbjct: 303 ISQMESITSQFMAMSKPQVLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEI 362 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ A ++PRGG + I + +N + + G ++ +++ Sbjct: 363 QCDGNQLKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGI-PEDRISRL 421 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLP 468 >gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri] Length = 744 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + L + + L + + H++ +P+ I +LL ++ + Sbjct: 500 QEQSARLKAEEANRLKDEFLAVLSHELRTPLNPILGWTKLLRAGKLDSAKTDYALETIER 559 Query: 60 AIIRLKFMRLAF-------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + IE V A +++ + Sbjct: 560 NAKLQTQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIETVFDP 619 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A GG+V I ++ ++ + G Sbjct: 620 NVGQVLGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECVDSQAEIKVSDTGKGISPDFL 679 Query: 164 FT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214 + D + + V L + + E + L Sbjct: 680 PHVFESFRQADATITRKFGGLGLGLAIVRHLVELHGGTIYAES-PGEDLGATFTVRLP 736 >gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1410 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 65/241 (26%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S+ + + + H+I +P+ AI ELL+E E + + IR + Sbjct: 910 LQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQVTEPRLKRYIRTIQAAG 969 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + S+ IG + + + + + Sbjct: 970 KTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINIQRKGLDFLVDIDKTL 1029 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLA 158 + +IL NL A + + SK + + + G Sbjct: 1030 PEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSACDVDEHHSKLDILIQVSDTGIGI 1089 Query: 159 RFPEKFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ +I + + + L + + E + L Sbjct: 1090 -PEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVNMMGGDIWVESTPGQGTTFNLL 1148 Query: 213 L 213 + Sbjct: 1149 I 1149 >gi|332995706|gb|AEF05761.1| osmolarity sensor protein [Alteromonas sp. SN2] Length = 438 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 62/218 (28%), Gaps = 7/218 (3%) Query: 4 NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMS 59 + + ++ L+ + I HD+ +P+ I + E+L E + + ++++ Sbjct: 218 RMNQGIKQLEHDRTLMTAGISHDLRTPLTRIRLASEMLPESQNWIKDGIVNDIEDMNAII 277 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + D + ++ Q ++++ +++ Sbjct: 278 DQFIDYARYDTEEIKENTDLNSLIIELAQARHIEEKHHIALKLNDIPLLDLRRVAMKRVI 337 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176 N+ A ++ ++ ++ G E + G+ + Sbjct: 338 DNIIENAFRYGSDNIVISTFYNRNEKRVYCKIRDFGPGIPAAELEHVFMPFAQGDKARST 397 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ L Sbjct: 398 SGSGLGLSIIRRIVEAHDGGVELRNHPQQGLIAEFYLP 435 >gi|290892746|ref|ZP_06555738.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071] gi|290557806|gb|EFD91328.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071] Length = 459 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+GG + I + D ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYDEGTNVFVEVQDSGVGISKSDMAKIFE 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458 >gi|218232323|ref|YP_002366680.1| sensor histidine kinase [Bacillus cereus B4264] gi|218160280|gb|ACK60272.1| sensor histidine kinase [Bacillus cereus B4264] Length = 357 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + + +G + Sbjct: 240 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIHDSGIGILEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 352 >gi|110679868|ref|YP_682875.1| phosphate regulon sensor protein, putative [Roseobacter denitrificans OCh 114] gi|109455984|gb|ABG32189.1| phosphate regulon sensor protein, putative [Roseobacter denitrificans OCh 114] Length = 347 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 16/234 (6%), Positives = 62/234 (26%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + + + H++ +P+ A+ +E L ++ D + ++ + + Sbjct: 108 QADQMRRDFVANVSHELRTPLTALMGFIETLRGPAREDAAARDRFLDIMEGEAGRMNRLV 167 Query: 65 KFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G+ + ++ + + L + Sbjct: 168 GDLLSLSRVEGNQRVRPQDRVNLSDVVQSVARTLAPLANDTSVVLECDLPQQPVILIGDA 227 Query: 116 AKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLARFPEKF- 164 +++ + + ++ G +V + S+ G Sbjct: 228 DQLMQVITNLVENAVKYGGSGGRVAIKLTEVARDTSLRAPGVLISVTDFGPGIDPVHLPR 287 Query: 165 --TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL + + +L Sbjct: 288 LTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIDSELGQGSTFTVVLP 341 >gi|114566583|ref|YP_753737.1| signal transduction histidine kinase nitrogen specific-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337518|gb|ABI68366.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 493 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 70/217 (32%), Gaps = 12/217 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII----- 62 L ++LV + + I H+I +P+ + L+++ E + + ++ L Sbjct: 270 RLDRLNLVGEMAASIGHEIRNPMTTVRGYLQIMRENKVYIQELEYFDLMIEELDRANAII 329 Query: 63 -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 K + + L + Q ++++ + ++E + Sbjct: 330 TDFLSLAKNKMVDMKPGDLNAIINKLLPLIQAKALSKDQYIKLELGDIPYLLLDNKEIQQ 389 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 ++LNL S+ G VTI I +++ G ++ + + + Sbjct: 390 LILNLVNNGLESMSLPGYVTIKTYMEDEAVILAVQDQGKGIDPS-LLDKLGTPFLTTKEN 448 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ ++ E D Sbjct: 449 GTGLGLAVCYRIAVQHNAKIDVETSAD-GTTFYLRFP 484 >gi|242373792|ref|ZP_04819366.1| histidine kinase [Staphylococcus epidermidis M23864:W1] gi|242348529|gb|EES40131.1| histidine kinase [Staphylococcus epidermidis M23864:W1] Length = 587 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 55/217 (25%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + H++ +PI + E + + + + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGVVTEPDEIRDSLAVVLDESKRLNRLVNELLNVARMD 423 Query: 75 GS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDLSRERAKILLNL 122 V+ + D + + T E ++L NL Sbjct: 424 AEGLSVEKEVQPIDDLLNKMKAKYRMQAEDLDLTMEFNSGNDNQLWDYDMDRMDQVLTNL 483 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177 A G + ++ NI + G + F + + Sbjct: 484 IDNASRYTQPGDTIAVTTAKDNRYNILYISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQ 543 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ E+ ++ E L Sbjct: 544 GTGLGLFICKMIIEEHGGKIEVESELGKGTTFIIKLP 580 >gi|297567355|ref|YP_003686327.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296851804|gb|ADH64819.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 384 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 58/230 (25%), Gaps = 18/230 (7%) Query: 3 KNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + L ++ + H++ +P+ AI +LELL ++ + Sbjct: 146 RQSEARLREINQAQQRFVADAAHELRAPLTAIQGNLELLYRYPEMPPQDRMESVIQALQE 205 Query: 62 I------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + S++ L + + + + Sbjct: 206 ARRLGRLVADMLALARGDAGHRLKRESIELDRVLLEAFESTCHLSQQHRLTHELEPVRLV 265 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++ L L A P GG+V +++ + + G+ + F + Sbjct: 266 GDRDYLKQLALILLDNALKYTPPGGQVHLALSRQEGHAELQVSDTGSGIAPQDLPHVFDR 325 Query: 167 IVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E L Sbjct: 326 FYRADQSRRRDPGGSGLGLSIAKWIVEQHGGEIWLESEPGQGTRAVVRLP 375 >gi|163736451|ref|ZP_02143870.1| histidine kinase [Phaeobacter gallaeciensis BS107] gi|161390321|gb|EDQ14671.1| histidine kinase [Phaeobacter gallaeciensis BS107] Length = 346 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 19/239 (7%), Positives = 64/239 (26%), Gaps = 27/239 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 +I + + + + H++ +P+ A+ +E L + D + +++ + Sbjct: 108 DITDREQASQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDAPARDRFLTIMQGEAN 167 Query: 59 SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + A D ++ + E Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAEAADVQLFLEIPEEPT 227 Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + ++ + ++ G + NGN Sbjct: 228 LVTGDPDQLQQVFTNLVENAIKYGGDQVTLRLRTRDRDPAVRAAAVRVEVIDNGNGIDPV 287 Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + + ++ R+ E V + +L + Sbjct: 288 HLPRLTERFYRVDSHRSREQGGTGLGLAIVKHIVNRHRGRMRVESSAATGTVFTVILPR 346 >gi|332533237|ref|ZP_08409104.1| osmolarity sensory histidine kinase EnvZ [Pseudoalteromonas haloplanktis ANT/505] gi|332037316|gb|EGI73771.1| osmolarity sensory histidine kinase EnvZ [Pseudoalteromonas haloplanktis ANT/505] Length = 438 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 18/206 (8%), Positives = 59/206 (28%), Gaps = 10/206 (4%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 LL + + HD+ +P+ I + E++ + + + I + + Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMVDEDD--YLREGIIYDIEDMNGIIDQFIEYLRHHKR 284 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFMVAHASLP 131 + + + + +++ + +++ N+ A Sbjct: 285 EELSCEDINALVAEVVNSELQHQRTITFKSNPNIGNIPLSSVAIKRVITNMIGNALRYSE 344 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVIL 188 +V +K + ++ +G E F G+ + + + Sbjct: 345 GDIEVLSYFNSNKKYVVIAVNDSGPGIPENELESVFEPFKQGDAARGSEGSGLGLAIIKR 404 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ E + + L Sbjct: 405 IVDMHDGKVKLENRPEGGLSAQVYLP 430 >gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 512 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 74/223 (33%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM 67 +L + + H++ +P+ +I +E + + + + ++R + + + Sbjct: 281 EELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPPERQKGYLTIVRDETNRLNRLVNDL 340 Query: 68 RLAFGY--------TGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 D + + + + ++ ++ + + +S ++ Sbjct: 341 LDLAKMESGELTLTMKPFDINELIRICVIKLETLITSKNLEIEANFEIDNMMVSADKDSI 400 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172 ++++NL A GK+ + +K++ S+K NG + + + + Sbjct: 401 ERVIINLLHNAVKFSNENGKIIVETAKNKDKIYVSVKDNGIGIDGDDKKRIWDRFYKSDK 460 Query: 173 ESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 D + V + E+K + E + L Sbjct: 461 SRGKDKTGTGLGLAIVKNIVTEHKQDIWVESEVGKGTKFTFTL 503 >gi|229086214|ref|ZP_04218414.1| hypothetical protein bcere0022_28070 [Bacillus cereus Rock3-44] gi|228697096|gb|EEL49881.1| hypothetical protein bcere0022_28070 [Bacillus cereus Rock3-44] Length = 246 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 18/227 (7%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52 + + S L L + I H+I +P+ ++ L LL E ++ Sbjct: 8 LKETEKLLRRSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLKPDITEQNKWYVDVMLSE 67 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + S + ++ ++ I + + + + ++ Sbjct: 68 ISQMESITSQFMAMSKPQVLSIHSCQIKKLIEEVVTFILPTAIMHNVHIIMDHSSVLPEI 127 Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ + ++ + + + + G ++ +++ Sbjct: 128 QCDGNQLKQVFINIFKNAIEAMPTGGKIFIRTQWIEERSVLIRIIDEGCGI-PQDRISRL 186 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ +L + + L Sbjct: 187 GEPFYSLKEKGTGLGLMMCYKIIEEHQGKLEITSELNTGTTVDICLP 233 >gi|294055632|ref|YP_003549290.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614965|gb|ADE55120.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 438 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 64/233 (27%), Gaps = 26/233 (11%) Query: 8 NLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA 60 L S+++ + + H++ +P+ I E L E ++ I ++ Sbjct: 186 RLKSLEMVRREFVANVSHELRTPLTIIKGFAETLVEDNASLPVEARARFLEKILNNAERL 245 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SWTGEK 108 + ++ + D + + + + + ++ G+ Sbjct: 246 HVLVEDLLTLSRLESKPDQVDPQLYSLRQLMEDTIENYSSRLNPGVQAIELKYDDRVGDF 305 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQ 166 +++ NL P ++++SV + + S++ +G + Sbjct: 306 SFDRFRLNQVVDNLIENTFRYAPEFTQLSLSVDYDEETDFVECSVQDDGPGIPAKDVPHI 365 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + L Sbjct: 366 FERFYRVDKGRSRERGGTGLGLSIMKHIVQLHGGTVWAESELGEGTKICFTLP 418 >gi|224367364|ref|YP_002601527.1| two-component hybrid sensor and response regulator histidine kinase (phoR-like protein) [Desulfobacterium autotrophicum HRM2] gi|223690080|gb|ACN13363.1| two-component hybrid sensor and response regulator histidine kinase (phoR-like protein) [Desulfobacterium autotrophicum HRM2] Length = 588 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 65/221 (29%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFMR--- 68 + + H++ +P+ +I +E L ++ + + +I + I + + Sbjct: 367 FAANVSHELKTPLTSIKGFIETLQDLDESEALTRREGFLTIIEKNVNRMIALVDDLMALS 426 Query: 69 ---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 F + + + V + +S + + L Sbjct: 427 KLERQEGDKTVFEPHDLSAVIKSARAACRTRSESGRVTVKADLSGPLFIPMDTLLVEQAL 486 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A GG+V I V K + + +G E ++I + Sbjct: 487 VNLLDNALKYSEPGGEVLIQVAQEKGSALIRVIDSGPGI-GQEHLSRIFERFYRVDSARS 545 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + E D + L Sbjct: 546 TDMGGTGLGLAIVKHIVQYHNGTIRVESTPDKGAMFEISLP 586 >gi|204931274|ref|ZP_03222034.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204319889|gb|EDZ05096.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 465 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLALQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ NG + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDNGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|186686039|ref|YP_001869235.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186468491|gb|ACC84292.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 503 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + K + L +L S + H+ +P+ I ++EL++ ++ I+ Sbjct: 259 LEKALEKEQELNRLKSLFISTVSHEFRNPLTVIQTAVELIEMKGGNLTDEKRGIYLKRIQ 318 Query: 55 LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + S ++ + + L ++E S Sbjct: 319 GAVQSMEKLMEEVLFVGRAEAKKLVYNPAPLNLEQFCLELIKDFSIVESSECEVVFTCHS 378 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161 + + + NL A PRGGK+ + + IF ++ G Sbjct: 379 DRTDAVMDEGLLNYMFGNLLSNAIKYSPRGGKIQFNLICDPIEKVAIFYIQDQGMGIPEA 438 Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F G+ +I + V ++ ++ + +L Sbjct: 439 DQARLFESFYRGSNVQSIKGTGLGLVIVKRCVDAHRGQISVTSQIGVGTTFTVILP 494 >gi|319653245|ref|ZP_08007347.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2] gi|317395166|gb|EFV75902.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2] Length = 454 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++I + + S I H++ +P+ I +++ + ++ + + Sbjct: 206 LARSIQLLADDLNYLREERNEFLSSISHELRTPLTYIKGYADIVQKRNLSPEERNQYLSI 265 Query: 53 IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + +K + D + + + V Sbjct: 266 ILEETNRLSDMVKNLFDLAKIDKNTFDIKKRSIDLKDFMKKIETKFSPAFTEKGMLLSVN 325 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +I+ NL A G K TI++ +K I ++K G Sbjct: 326 CRESITISADASRLEQIIFNLLDNAIKYSTAGDKTTININRTKKHVIINIKDTGRGISEE 385 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + V L H + + + + + Sbjct: 386 ELPFIFNRFFRVDKSRARALGGTGLGLAIVKELVHAHGGTISVCSREGDGTEFEIVFK 443 >gi|237719384|ref|ZP_04549865.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451244|gb|EEO57035.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 570 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 333 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 392 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 I+ L+ + +T + + L + +Q+ + Sbjct: 393 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQ 452 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A P+G + + F +K G +K Sbjct: 453 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 511 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 512 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 564 >gi|229529050|ref|ZP_04418440.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae 12129(1)] gi|229332824|gb|EEN98310.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae 12129(1)] Length = 597 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 66/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + + + H + L + L Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLP 589 >gi|258516161|ref|YP_003192383.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] gi|257779866|gb|ACV63760.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] Length = 507 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 12/218 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ L +DLV + + I H+I +P+ + L+LL + + L Sbjct: 278 AEREIARLDRLDLVGEMAAGIAHEIRNPMTTVRGFLQLLGTKKECVKYQEYYSLMIDELD 337 Query: 62 I----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + F + L + + Q + + Sbjct: 338 RANSIISEFLSLARNNTNDFKLQSLNCIINVLMPLITADAIKSDKNIIAQYGDIQDLLLN 397 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +E +I+LNL ++P G +TI +E + S++ G P+ ++ Sbjct: 398 EQEIRQIVLNLTRNGLEAMPSGKILTIKTYMEGDEVVLSVQDQGKEI-APDILNKMGTPF 456 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A+ + + E Sbjct: 457 FTTKNNGTGLGLATCYSIANRHNAAISVETGP-AGTTF 493 >gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 2783 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 66/236 (27%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMS 59 ++I + + S + H++ +P+ AI +++L + + + + + + Sbjct: 2534 RDITREIEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQLSYLNIIKNN 2593 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 + ++ + V + +++ + + + + + + Sbjct: 2594 TNRLRALIEDILEFSRPDSKKKLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSL 2653 Query: 117 -----------KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +I+ NLF A G + + N ++ G PE+ Sbjct: 2654 PPVIADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGM-SPEQL 2712 Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + S + Sbjct: 2713 KKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIP 2768 >gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1490 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++I + A S + H++ +P+ ++ +L LL E I+ +Q+ Sbjct: 1248 EDITERDKVERMKAEFISVVSHELRTPLTSMQAALSLLSEKIIDPNSPEGEATIQIATEG 1307 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106 + + + L +G + L ++ +IE IA + + + + Sbjct: 1308 TDRLVRLVNDILDLERLESGKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCSF 1367 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P + K F ++ G Sbjct: 1368 QIEADADRILQVLTNLLSNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIPSA 1427 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + T + + ++ ++ E I L K Sbjct: 1428 HLDSIFARFGQVDASDSRTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLPK 1486 >gi|332980719|ref|YP_004462160.1| histidine kinase [Mahella australiensis 50-1 BON] gi|332698397|gb|AEE95338.1| histidine kinase [Mahella australiensis 50-1 BON] Length = 448 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 56/223 (25%), Gaps = 18/223 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFM 67 + L L + I HD+ +P+ I E++ + E +++I + + + Sbjct: 222 KTEKLRRELIANISHDLRTPLTMITGYGEIIRDLPDENTPENIRVIIDEANRLTRLVNDL 281 Query: 68 RL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 D + D + + Sbjct: 282 MELSQLQSGTQQLQISRFNLTDVAKQTIERCAQFTKKDGYDITFSSDGDAWVEADELKIS 341 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173 +++ NL A + V +S Q S+K G+ + + + Sbjct: 342 QVIYNLLGNALTYTGKDKTVAVSQQIKDGYVRISVKDTGDGISPEHIDNIWDRYYKVDKT 401 Query: 174 STID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E L+ Sbjct: 402 HRRAALGTGLGLSIVKSIIQMHDGKCGVESKPGAGSTFWFELK 444 >gi|239978524|ref|ZP_04701048.1| two-component system sensor kinase [Streptomyces albus J1074] gi|291450420|ref|ZP_06589810.1| two-component sensor [Streptomyces albus J1074] gi|291353369|gb|EFE80271.1| two-component sensor [Streptomyces albus J1074] Length = 371 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 54/232 (23%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 132 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWDRFTDDQKRLMLETVDAD 191 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G + +R V Sbjct: 192 AGRVTRLIAELLDISRIDSGRLEVRRQPVDLAAAVGRHVHALVAAGQPPERFLVRLHRPL 251 Query: 109 IDLSRERA---KILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 L + +IL NL A +++ ++ G Sbjct: 252 PALWADPDKIDQILSNLLENAVRHGEGTVTIDVAPAPLKNDTEGTAVTVSDEGPGIPEES 311 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + E L Sbjct: 312 VNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTISVERARGGGARFRFTLP 363 >gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus DSM 14838] gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus DSM 14838] Length = 431 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 61/231 (26%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 A+ N L + + H+I +P+ AI ELL + + ++++ ++ Sbjct: 185 AREKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLASASTEEEKAQFLEIVHSNNE 242 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------W 104 + VD + DIEQ+ + V Sbjct: 243 LLQQLIADILDLSKIEAGTLEFTFSEVDVNQLMFDIEQLFRMRLEDKSAVIQIIRQTPPD 302 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++ N A G + ++ F +K G+ + Sbjct: 303 ECVMYTDRNRLQQVVSNFMTNAVKFTDEGSITFGYNRCAEG-LYFYVKDTGSGIPEDKVN 361 Query: 165 TQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 VE + ++ + ++ E L Sbjct: 362 HIFERFVRVEQNKKGTGLGLAICEMIIRKLGGKIGVESEYGKGSTFWFTLP 412 >gi|196249174|ref|ZP_03147873.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196211403|gb|EDY06163.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 434 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 17/229 (7%) Query: 2 AKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 NI + + + A+ L + I H+I +P+ A ++L++E + ++ Sbjct: 186 RHNIALRKRIIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARI 245 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TG 106 A + + + + + D I + Sbjct: 246 AMEELDRAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDIIRPLANMSCVDIKTTLSPF 305 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + + LLN+ A ++P GG + + V + + G E+ + Sbjct: 306 SVMGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDDGRVLIRIADTGVGM-TKEQLER 364 Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V + + E +S L Sbjct: 365 LGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHRGTTVSIYLP 413 >gi|222055858|ref|YP_002538220.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221565147|gb|ACM21119.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 648 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 68/244 (27%), Gaps = 31/244 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 K + + AL L I HD + + I+ LL D + + + I Sbjct: 255 KKAFEQLRQAQKMEALGQLAGGIAHDFNNLLTIINGYSTLLLRSLDRESPQHQEAEQILK 314 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEK 108 + A + + ++ L D + IE + + Sbjct: 315 AGDRAADLTRQLLTFSRRQILAPRMLNLNDQIRGIEKMLHRVVGEHIYLETSLAEDIDLI 374 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKI 153 + +I++NL + A ++ GG + T + ++ Sbjct: 375 KIDPGQVEQIVMNLVVNAGDAMKDGGMMSIATTNAEIDQSFASTHPGSVMGGYVMLAVTD 434 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG E +++ + + + V + +N + + Sbjct: 435 NGTGM-TEEVKSRLFEPFFTTKEMGRGTGLGLATVYGIVKQNGGYIDVASELEKGTTFRI 493 Query: 212 LLEK 215 L + Sbjct: 494 YLPR 497 >gi|148657589|ref|YP_001277794.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569699|gb|ABQ91844.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 471 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSM 58 M+ ++ + + + + + HD+ +P+ + E L E I + Q++ Sbjct: 217 MSADLSRAIQARR---QMTADLAHDLRTPLSILRGYTEGLQEGRISGSPTIYQIMHGEVE 273 Query: 59 SAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + +RL + + ++V + Sbjct: 274 HLQRLIDDLRLLSLADAGALSLNRRPVDPRALLERAALAHMVQAEQQGLTIRVEASETLP 333 Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + A++L NL A RG V + ++ I ++ G+ + Sbjct: 334 SVAVDTDRMAQVLNNLVANALRHTARGEIVLTAREEGAQRVILEVRDTGSGIAPEDLPRI 393 Query: 164 FTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + + L Sbjct: 394 FDRFYRADPSRSREGGHQSAGLGLAIAKAIIEAHNGAISVASRVGEGTTFTITLP 448 >gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] Length = 1390 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMS 59 + L+ +DL S I H+ +P+ I E+L ++ V + + L+ + Sbjct: 338 QQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSELDVRVREELELAHRN 397 Query: 60 AIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107 + VD ++ V I Sbjct: 398 GLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAGLEFTVDCPPL 457 Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 K++LNL A G D ++ G E Sbjct: 458 AEPVYVDRDMWEKVVLNLLSNALKFTREGAVTVRVTADDGVAV-VTVADTGVGIPEAE-M 515 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + I V L + + + + + + Sbjct: 516 PRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGGGTTFTIQMP 571 >gi|221197447|ref|ZP_03570494.1| periplasmic sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] gi|221204120|ref|ZP_03577138.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221176286|gb|EEE08715.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221184001|gb|EEE16401.1| periplasmic sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] Length = 1029 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 63/244 (25%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + + H+I +P+ I +LELL+ ++ ++ Sbjct: 501 LVQKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSVLDLPQRSRVQT 559 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 +A L+ + +T + + IE IA + Sbjct: 560 LRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLFCE 619 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155 + S + A++ NL A G +++ G Sbjct: 620 IAASASQRMRGDPTRLAQVFGNLLSNAIKFTAHGHVTARLRAVRGECGTAELAIAIEDTG 679 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + L R+ + Sbjct: 680 IGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFT 739 Query: 211 ALLE 214 L Sbjct: 740 VRLP 743 >gi|54307406|ref|YP_128426.1| osmolarity sensor protein [Photobacterium profundum SS9] gi|46911826|emb|CAG18624.1| putative sensor outer membrane protein EnvZ [Photobacterium profundum SS9] Length = 443 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 61/224 (27%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 K M ALL + + HD+ +P+ I + E++ + Sbjct: 216 TKAFNQMAEGMKQLEDDRALLLAGVSHDLRTPLTRIRLATEMMSPEDSYLADGMTKDTEE 275 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + +D L ++ + + + G + Sbjct: 276 CNEIISQFMDYLKSTKKPVMDVIDLNDLLQEVAESEGGYENEVELGLSDTPGRIEANAVA 335 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----- 169 + + NL + A K++ + + ++ NG + + Sbjct: 336 MKRCVANLVVNALRYGNGWVKISSGTSADRKSAWYCVEDNGPGIQEDQVSRMFQPLTRGD 395 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 S + + V + ++ + D + + L Sbjct: 396 SARGSDAEGTGLGLAIVKRIIDQHDGVITVTNRRDGGLKVQITL 439 >gi|327482007|gb|AEA85317.1| sensor histidine kinase [Pseudomonas stutzeri DSM 4166] Length = 984 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 74/239 (30%), Gaps = 25/239 (10%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47 + + + S L ++ L + + H+I +PI I + L + I Sbjct: 738 LTETQQLEDRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLRDEREGDGEIVEISA 797 Query: 48 EVMQLIRLSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++++ + S + F + + + V Sbjct: 798 QIIEQTKRVSHIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNRTEVQFLNLC 857 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + A++L+NL A + P GG + ++ + ++ +++ G+ E Sbjct: 858 HPDHVAEGDPQRLAQVLINLLSNARDASPPGGVIRVTSEVAEQTVYLTVEDEGSGI-PKE 916 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 ++ + + + + V + E+ ++ + D L + Sbjct: 917 IQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDSPADPETQRGTRFRITLPR 975 >gi|307244128|ref|ZP_07526246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492499|gb|EFM64534.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Peptostreptococcus stomatis DSM 17678] Length = 426 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 21/234 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56 ++I + ++ + + H++ +P+ +I +E L E + +I Sbjct: 191 EDISERIRLENIRRDFAANVSHELKTPLTSIQGFIETLKVNDDNIESATRKRFLDIIDNE 250 Query: 57 SMSAIIRLKFMRLAF----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S I + + + + D+ + V+ + + Sbjct: 251 SSRLRILINDILMLSSIEGDIVLSLEKVDLKKENKKILDLFEDKMVKKQVNIYFEYNGLE 310 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++++NL A GG V +S + +++ ++ NG E Sbjct: 311 TIQTHREYYKELMINLISNAIKYNRPGGYVKVSFFEDEDDYRICIEDNGIGIGVEEQERI 370 Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + ID + V + + E + L K Sbjct: 371 FERFYRVTKSRNKEIDGTGLGLAIVKHIILSLGGDIGLESVLGQGSKFKISLPK 424 >gi|255306760|ref|ZP_05350931.1| two-component sensor histidine kinase [Clostridium difficile ATCC 43255] Length = 664 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 15/224 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 L ++++ L S + H+I +P+G I N+ LL + ++ ++ I + Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112 A + + + I + + + I ++ Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKMLQLKNVEIKIDCEHNLVCYING 554 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +NL + ++ + GK+ I + K NG + I + Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNYCLFIDFKDNGEGIKEDALKD-IFNPFY 613 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y +N + E + Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657 >gi|327190897|gb|EGE57953.1| two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CNPAF512] Length = 274 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 57/233 (24%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLS 56 + L + L + I HD+ +P+ AI + L + + S Sbjct: 31 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRADLLSTVVDES 90 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + +G+++ L ++ +A ++ E + Sbjct: 91 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGTALARAAKILEHHKTEMSIPAELPM 150 Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P G + I + + + G + Sbjct: 151 VRVDPVLFEQVIFNLLDNAAKYAPEGSVIQIEGWADADNVVVQVSDEGPGIPPADLARVF 210 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215 D + + V + L K Sbjct: 211 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRRGRPGAVFTIRLPK 263 >gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 561 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 70/245 (28%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEV 49 +N ++ L + + + H+ +P+ AI +L + + + Sbjct: 313 EQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQKRN 372 Query: 50 MQLIRLSSMSAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--- 105 +Q I + + + + + G + + + +++++ +A + Sbjct: 373 LQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKLVV 432 Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGN 156 E ++ +I+LNL A G + + S+K G Sbjct: 433 DAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDTGI 492 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E +I + + LA R+ + + Sbjct: 493 GI-AQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTFT 551 Query: 211 ALLEK 215 L + Sbjct: 552 LHLPR 556 >gi|302333163|gb|ADL23356.1| integral membrane sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JKD6159] Length = 583 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|298694775|gb|ADI97997.1| staphylococcal respiratory response protein B [Staphylococcus aureus subsp. aureus ED133] Length = 583 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|298504565|gb|ADI83288.1| sensor histidine kinase, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 469 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 68/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQL 52 +A L ++ + H++ +P+ + E+ E E+++ Sbjct: 228 LATTFNDTLERLENAFNRIRQFTGDVSHELRTPLTILRGEAEVGLKWAKEPEEFRELLRS 287 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103 ++ + G V + D+ ++ + + + + Sbjct: 288 NLEEINRMSKIIETLLELSRVEGGVKLELADLDLSDLLAELVQQSRLIAPDKNLRIAFVG 347 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++ +NL A P G++++ V + + ++ +G + Sbjct: 348 QEPVTILGDWLRLRQVFMNLLDNAVKYTPADGEISVVVDTTGDSARVAIIDSGPGIPPED 407 Query: 163 ---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + R+ + + LL + Sbjct: 408 LPHIFERFYRVDKARNRADGGCGLGLSLVKTFVEAHGGRIEVVSEAGKGSIFTVLLPR 465 >gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 736 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 25/223 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR--------- 63 + + + H++ +P+ ++ ++L+ ++D+ + ++ S Sbjct: 513 SEFLANMSHELRTPLNSVIGFSQVLETNSSNHLDDKEQKYVKNIYESGSHLLELINNILD 572 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAK 117 +V+ + D ++E S E + + Sbjct: 573 ISKVESGKMDYLPETVNLTEIIDDTIVLVEPMAKKKSVDLHLNIKSEDLEIHVDRLKFKE 632 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 I+ NL A P G V+++ + S+ G EKF I D Sbjct: 633 IMYNLLSNAIKFTPEKGTVSVNSKCVNKNFQISVSDTGIGV-PKEKFESIFDPFKQVDST 691 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + E + L Sbjct: 692 SSRSFGGTGLGLALVRKYVEMHGGEIWVESEVGVGSTFTFTLP 734 >gi|317151842|ref|YP_004119890.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942093|gb|ADU61144.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 333 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 65/232 (28%), Gaps = 25/232 (10%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIEDEVMQL 52 + S + L L S I H+I +P+G I ELL + + Sbjct: 87 LLIHSQKMSVLGELSSGIAHEINTPLGIIGQETELLHMLAGRSEYAALQSRPELWDRIDQ 146 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 I + T +V + LG++ + + + + Q Sbjct: 147 ISTQVERCGEITHQLLDFARKTRAVLQTVNLGELVEDMIRLVEREAGYQNIQIKRHFHDQ 206 Query: 113 RER--------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++LNL ++ G VT S + S + G PE Sbjct: 207 GRIISTDPALVRQVVLNLLQNGVQAVGHDGTVTASTRVSPERAEIQVSDTGCGI-APENL 265 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + H + + LL Sbjct: 266 QRIFDPFFTTKPPGQGTGLGLSICLKIVHRLGGHIRVRSKPGQGAEFTLLLP 317 >gi|265765874|ref|ZP_06093915.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253542|gb|EEZ25007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 565 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ + +E + IR+ + + Sbjct: 323 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 382 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L+ + ++ + + L + + VQ+ +T ++ Sbjct: 383 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 442 Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++++NL A G K+E F +K G + Sbjct: 443 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 502 Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ + E + L Sbjct: 503 KVFERFVKLNTFIKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 553 >gi|224538854|ref|ZP_03679393.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus DSM 14838] gi|224519529|gb|EEF88634.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus DSM 14838] Length = 329 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 18/227 (7%), Positives = 53/227 (23%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK+ NL + L + + H+I +P+ +I +L ++ +++++ ++ Sbjct: 98 AKDKAENLDRLKSAFL--ANMSHEIRTPLNSIVGFASMLVEEEDKEERQGYIEIMQENTE 155 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGE 107 + + + + + I ++ Sbjct: 156 LLLQLISDILDLSKIEAGTLDFNMGYLNIRDFCEDILRGYEIKEDKPVPVVLASGLPDYR 215 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166 + +++ N A +G FS+ G Sbjct: 216 IYTDKKRLMQVITNFINNALKFTSKGQITLEYHFKEGTNEIEFSVTDTGIGIAPDAVGQV 275 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + E Sbjct: 276 FDRFVKLNTFSKGTGLGLSICRSIVEHLGGTIGAESEVGVGSRFWFT 322 >gi|196041904|ref|ZP_03109192.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196027276|gb|EDX65895.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 357 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 72/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 123 MTDELNVM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ +G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352 >gi|218777967|ref|YP_002429285.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759351|gb|ACL01817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1147 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 62/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQL 52 + + + + ++ + L + HD+ + + I E+L + +E++ Sbjct: 766 LQEQLSMS-QKLESIGRLAGGVAHDLNNLLSPIIGFGEILSDDIGPDDPKREAVEEILGA 824 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R +D LG + ++ I D ++V + + + + Sbjct: 825 GLRARNLVRQLLAFSRKQTLEFKPLDISKTLGAFKNLLRRTIPEDIEIRVISSQKVLPVM 884 Query: 113 RERAKILLNLFMVAHASLPRGGK------------------VTISVQDSKNENIFSLKIN 154 + +I + +A + S + Sbjct: 885 ADAGQIEQVIMNLAVNAADAMPNGGVLTLETGMADLDADYAKLHSEVQPGRYAALVISDT 944 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + V + ++ + + L Sbjct: 945 GQGMDQAARERAFEPFFSTKGKHGTGLGLATVYGIVKQHGGSIWLYSEEGQGATFKIYLP 1004 >gi|144897546|emb|CAM74410.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 565 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 73/243 (30%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQ 51 + + + S + +L L + I H+I +P+ ++ L + E + Sbjct: 320 LRETQVHLIQSEKMASLGQLVAGIAHEINNPLSFALSNVFSVEGWLASVAEADALPADLA 379 Query: 52 LIRLSSMSAII---------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 S S + F RL G ++D + + + + Sbjct: 380 AKITKSRSRMTDTAQGLERVRELVVKLRTFSRLDEGEFNTIDVREAMESVLLFLRHKMTG 439 Query: 97 DKRVQVSWTGEKI--DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 V + + ++L+N+ A ++ G +T+ + S++ + Sbjct: 440 RIEVVRDYASVNDLACYGGQLNQVLMNIVANAVDAIEDQGIITVRTGVEGDMFAISVQDS 499 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ E +I D + + + ++ R+ L Sbjct: 500 GSGI-PKENMERIFDPFFTTKPVGQGTGLGLAISYKIVQAHRGRIEVASELGQGTEFRVL 558 Query: 213 LEK 215 + + Sbjct: 559 IPR 561 >gi|39995560|ref|NP_951511.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982323|gb|AAR33784.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 469 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 68/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQL 52 +A L ++ + H++ +P+ + E+ E E+++ Sbjct: 228 LATTFNDTLERLENAFNRIRQFTGDVSHELRTPLTILRGEAEVGLKWAKEPEEFRELLRS 287 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103 ++ + G V + D+ ++ + + + + Sbjct: 288 NLEEINRMSKIIETLLELSRVEGGVKLELADLDLSDLLAELVQQSRLIAPDKSLRIAFVG 347 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++ +NL A P G++++ V + + ++ +G + Sbjct: 348 QEPVTILGDWLRLRQVFMNLLDNAVKYTPADGEISVVVDTTGDSARVAIIDSGPGIPPED 407 Query: 163 ---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + R+ + + LL + Sbjct: 408 LPHIFERFYRVDKARNRADGGCGLGLSLVKTFVEAHGGRIEVVSEAGKGSIFTVLLPR 465 >gi|21225799|ref|NP_631578.1| two component system histidine kinase [Streptomyces coelicolor A3(2)] gi|7799270|emb|CAB90892.1| two component system histidine kinase [Streptomyces coelicolor A3(2)] Length = 504 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 29/240 (12%) Query: 1 MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----------V 43 MA+ + + +L L + + H++ +P+ A+ E+LDE Sbjct: 261 MAETLER--DAAELRRLEAGARRFAADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTE 318 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + +R + ++ R + VD + Q+ R Sbjct: 319 DAVRLISEEVRTLTRMVEDLMEVSRFDAKAAPVHREDVDLRTLVTKTLQLRGWAHDERVR 378 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + R +L NL A VT++V+ S + ++ G Sbjct: 379 ADLPEPAPVRVDPRRIDVVLGNLVANALHHGR--PPVTVAVRVSDDRVRVTVTDRGPGIP 436 Query: 160 F---PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + A + L V + L + Sbjct: 437 DDALPYVFDRFYKADAARPRSGGSGLGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 496 >gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 720 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 51/239 (21%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ 51 K + L L + + I H+I +P+ AI LL E GI +E + Sbjct: 474 RKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGISEEKQE 533 Query: 52 LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I + + + VD ++E Sbjct: 534 YINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGIC 593 Query: 101 QVSWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 ++++NL A G F + G Sbjct: 594 ICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGC 653 Query: 157 LARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + ++ L Sbjct: 654 GIPEERLEEIFGNFVKLNSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712 >gi|260460550|ref|ZP_05808801.1| Osmosensitive K channel His kinase sensor [Mesorhizobium opportunistum WSM2075] gi|259033655|gb|EEW34915.1| Osmosensitive K channel His kinase sensor [Mesorhizobium opportunistum WSM2075] Length = 882 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 54/233 (23%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LS 56 + L + L + I HD+ +P+ AI + L E S Sbjct: 631 RAKLAAEADRLRSALLTSISHDLKTPLAAIMGAAGTLREFAPALPEQDRAELLSTVLDES 690 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + +G+++ + ++ + +++ E Sbjct: 691 ERLNRFIANLLDMTKIESGAMEPNYAFHYVGDIVGSALQRARKIIAEHKTEIDIPMDLPM 750 Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + L NL A P G + + I + G + Sbjct: 751 LKVDPVLFEQALFNLLDNAAKYAPPGSTIRVQGWTDNGSVILQVMDEGPGIPPGDVERIF 810 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215 D + + D V + + K Sbjct: 811 DTFYRVRKRDQVRAGTGLGLSICRGFIEAMGGTITAANRTDRPGAVFTISMPK 863 >gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 720 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 51/239 (21%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ 51 K + L L + + I H+I +P+ AI LL E GI +E + Sbjct: 474 RKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGISEEKQE 533 Query: 52 LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I + + + VD ++E Sbjct: 534 YINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGIC 593 Query: 101 QVSWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 ++++NL A G F + G Sbjct: 594 ICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGC 653 Query: 157 LARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + ++ L Sbjct: 654 GIPEERLEEIFGNFVKLNSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712 >gi|217963311|ref|YP_002348989.1| sensor histidine kinase [Listeria monocytogenes HCC23] gi|217332581|gb|ACK38375.1| sensor histidine kinase [Listeria monocytogenes HCC23] gi|307572110|emb|CAR85289.1| two-component sensor histidine kinase [Listeria monocytogenes L99] Length = 459 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+GG + I + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYEEGTNVFVEVQDSGVGISKSDMAKIFE 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458 >gi|168705546|ref|ZP_02737823.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 559 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 24/229 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------- 59 S L A+ L I HD + + + +LEL+ + + S+ Sbjct: 189 QSHKLEAVGRLAGGIAHDFNNLLTVVLGNLELIRCGAATGADAEELLASTERAAKQAAEL 248 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116 L F R T SVD + D ++ I V+ ++ + Sbjct: 249 TKQMLGFARRQPLRTASVDLNQLVRDSLVLLRRTIDARIVVRFEPAPHLRPVAADPVQLQ 308 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKINGNLARFPEKFTQIV 168 ++L+NL + A ++P GG +T+ D+ S+ G E +I Sbjct: 309 QVLMNLCLNARDAMPEGGTLTVETADADPPDGPEGKRFVRLSVSDTGVGM-TDEVREKIF 367 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + V +A + + L + Sbjct: 368 DPFFTTKGVGQGTGLGLAVVYGVATAHGGSVEVASAPGAGSRFDVYLPR 416 >gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI] gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 621 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 61/252 (24%), Gaps = 40/252 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVG------------ 44 + ++ +L S + H++ +P+ ++ ++ L+E Sbjct: 127 LRQSNEKLTELDELKTDFLSTVSHELRTPLTSVLGFAKITQKRLEEHIFPLIISTDRRIE 186 Query: 45 ----IEDEVMQLIRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQ 88 + +++I + + + + Sbjct: 187 KTVKQVKDNLEIIVSEGERLTELINDVLDIAKLEAGKIEWKMEKLSMADVIERATAASSY 246 Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + E + + ++++NL A G VT + +E Sbjct: 247 LFEQKGLAFFKEIEEGLPDLTGDRDRLIQVIINLISNAVKFTNEGS-VTCRARMIGDEIT 305 Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202 S+ G E +I + + + + R+ E Sbjct: 306 VSVIDTGIGI-AREDHERIFEKFKQAGETLTDKPKGTGLGLAICKQIVEHHGGRIWVESE 364 Query: 203 DDHNVVLSALLE 214 S L Sbjct: 365 PGKGSSFSFALP 376 >gi|54022512|ref|YP_116754.1| putative two-component system sensor kinase [Nocardia farcinica IFM 10152] gi|54014020|dbj|BAD55390.1| putative two-component system sensor kinase [Nocardia farcinica IFM 10152] Length = 511 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 58/224 (25%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + H++ +P+ I EL + M I + + ++ + + Sbjct: 272 FVADASHELRTPLTTIRGFAELYRQGATTDPAMFMDRIEHEARRMGLLVEDLLMLARLDA 331 Query: 76 SVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSRERAK 117 + + V R ++ + Sbjct: 332 QRPLEIGTVDLLTVAGDAVHNARAVAAAADPAGPRRRIELDVHAGTGTLEVPGDEDRLRQ 391 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI- 176 +L NL A P VT+ + +E I ++ G PE ++ + + + Sbjct: 392 VLANLLNNALTHTPPDAAVTVRLTPEPDEVILAVADTGPGL-TPEAAERVFERFYRTDVS 450 Query: 177 -----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + + L + Sbjct: 451 RARASGGSGLGLSIVQALVVAHGGSVSVDSAPGAGATFTVRLPR 494 >gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] Length = 656 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +M+ A + + H+I +P+ AI +ELL + + S+ Sbjct: 162 LKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHEDPNQTQKRYLATLRNSS 221 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 + ++ + + L V RV + Sbjct: 222 NVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQISNRKNILLTGRVDAAV 281 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + S ++L+NL A + V + + K+ FS++ +G Sbjct: 282 PIQIQGDSSRLQQVLMNLISNAFKFTDQGHILVRVECTEQKDRLRFSVEDSGVGIAEEAQ 341 Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V + + H + Sbjct: 342 ASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIRSRSGHGATFFFDIP 397 >gi|303327857|ref|ZP_07358297.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3] gi|302862218|gb|EFL85152.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3] Length = 617 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 62/214 (28%), Gaps = 18/214 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69 + + H++ +P+ AI E L + E + + + + + Sbjct: 385 FVANVSHELRTPLTAIQGYAETLISLDTSPECRRFGEIILKNGAYLTRMVGDLLALARLE 444 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 T ++L + + + + + V + + A++ NL Sbjct: 445 GKTGSLELAPTDPREALAQAKGMCREVLERRNLHLNVDMPEQCRVMASLPHLAQVFRNLL 504 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD 180 A P GG + ++ NE +F + +G + F + S Sbjct: 505 ENACRYAPEGGNIRVTAHPVGNEVVFRVVDDGPGIPAADLDRIFERFYQVERHRGQASTG 564 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVV-LSALL 213 + + + R+ E L L Sbjct: 565 LGLAICKHIVERHGGRIRAESPAQDGSTALVFTL 598 >gi|261414845|ref|YP_003248528.1| integral membrane sensor signal transduction histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371301|gb|ACX74046.1| integral membrane sensor signal transduction histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326660|gb|ADL25861.1| sensor histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 682 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 24/230 (10%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV---------------GIEDEVMQ 51 L+A+ S + H++ +P+ +I E++ G E ++ Sbjct: 451 QEHKLLAMKANFLSSVSHELKTPLTSIKMFAEMMARGRVQKVEKVQEYSGLIGKEATRLE 510 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + + D + I + ++ + + Sbjct: 511 NLIGAILNYTRMEHGKGGFHWEKLDFSACVQKVFDNVEDIGVEKGLMFNTKIEPSMFVVG 570 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ NL A G +TI+V ++ +FS+ G E+ D Sbjct: 571 DYTALYSLVQNLIENAIKYTNAPGDITITVAPDEDRVVFSVADTGIGIPSSEQKNIFNDF 630 Query: 171 N-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V +A +K + + +K Sbjct: 631 YRVGDEMTRSTKGSGLGLAIVKRVAETHKATISLTSKPGKGSTFTVRFKK 680 >gi|162448620|ref|YP_001610987.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159202|emb|CAN90507.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 623 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 68/246 (27%), Gaps = 33/246 (13%) Query: 1 MAKNICFNLSSMDL----------VALLCSRICHDIISPIGAIHNSLELLDEVGI----- 45 + + + + L L + + HD+ SP+ I + LL Sbjct: 360 LGRRAALAIDNARLYESAQRAIRAREELVAVVSHDLKSPLATIVMNTSLLRRKLPGADEA 419 Query: 46 --EDEVMQLIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 ++ I+ ++ ++ + D LGD +++ + A Sbjct: 420 VEVRRPVERIQKAADRMNRLIRDLLDLAKLDGGHISIQPVPHDVAGLLGDAIELLREEAA 479 Query: 96 VDKRVQVS----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 + +++ NL A GG+V + + E S+ Sbjct: 480 EKSLRLEQSVELGVDRALCDRERILQVIANLVGNAIKFTSAGGEVAVRAEPWGREVRLSV 539 Query: 152 KINGNLARFPEKFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + G ++ +I + + + + L + R+ E Sbjct: 540 RDTGPGI-PEDQRARIFERYWQAKETAHKGTGLGLSIAKALVEVHGGRIWVESKVGEGST 598 Query: 209 LSALLE 214 L Sbjct: 599 FFFTLP 604 >gi|118478434|ref|YP_895585.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118417659|gb|ABK86078.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 755 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL + + ++ Sbjct: 526 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTKNENNQGYINIVSSEIE 585 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + + ++ +S Sbjct: 586 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 645 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 646 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSICFIDQGCGI-PKERIPYLGE 704 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K ++ E + ++ L Sbjct: 705 PFYSIKEEGIGLGLMICYKIIETHKGKVFIESEVNKGTIVEVTLP 749 >gi|83643804|ref|YP_432239.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Hahella chejuensis KCTC 2396] gi|83631847|gb|ABC27814.1| Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Hahella chejuensis KCTC 2396] Length = 698 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 79/233 (33%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE------DE 48 + + L A+ + + I H++ P+ A+ + + + L++ + D+ Sbjct: 461 LRTTQEALMQERKLAAMGRMSAAIAHELNQPLTALVSYVAMGRLYLEQEQKDKSAATLDK 520 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWT 105 + L++ + + F + + +E+V+E + K + Q+ Sbjct: 521 MDALVQRIARISSQLKSFAGIRSVDLRPTALQAVMRYVEEVLEHKLNQQKSIIRMQIPDG 580 Query: 106 GEKIDLSRERAKILLNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + I ++++NL A A+ ++++ + + + S++ NG E+ Sbjct: 581 LQAIADQHMLEQVMINLLDNAIAAVKSAVKPDISVAAERCGDRVMISVRDNGEGM-DEER 639 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + L + + + L Sbjct: 640 LRHLFDPFFTTKTGSEGLGLGLAISYNLLQDMHGEITVTSTPGEGSEFTLSLP 692 >gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 726 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/245 (8%), Positives = 59/245 (24%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 KN L A + + + H++ +P+ +I +LL E + ++ Sbjct: 477 RKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVYGELNLKQT 536 Query: 54 RLSSMSAIIRLKFMRL-----------------AFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + + L + + + D+ + Sbjct: 537 KAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMIFPFATSKGL 596 Query: 97 DKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 +++ ++L NL A G V + ++ +G Sbjct: 597 KIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKAVQMDGFLKITVADDG 656 Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + ++ + V + + + E V Sbjct: 657 IGIAAAD-HEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFESEVGKGSVF 715 Query: 210 SALLE 214 + Sbjct: 716 GFSIP 720 >gi|297530123|ref|YP_003671398.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297253375|gb|ADI26821.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 457 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 + + +L+ + + + I H++ +P+ + ++ + +E + Sbjct: 223 QTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLSEEQRANYMAIIYEEA 282 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTG 106 + +L L + + + + Q + Sbjct: 283 EKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSV 342 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + ++++N+ A G V ++V K + ++ G + Sbjct: 343 MAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRI 402 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + L Sbjct: 403 FERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTIIMTLP 455 >gi|293373302|ref|ZP_06619660.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292631698|gb|EFF50318.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 502 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 265 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 324 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 I+ L+ + +T + + L + +Q+ + Sbjct: 325 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQ 384 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A P+G + + F +K G +K Sbjct: 385 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 443 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 444 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 496 >gi|266621452|ref|ZP_06114387.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479] gi|288866893|gb|EFC99191.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479] Length = 496 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 + + L + L I HD+ +P+ I S +L+++ Sbjct: 256 KEETKIQIEKERLKSTLLRSISHDLRTPLTGIAGSSNFLYDNYGSLDEETAKSMLNDICT 315 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + E + + + ++ + VD LI K V Sbjct: 316 DAEWLNSMVENLLNMTRIQEGRLDIQKKKEVVDDLISGAVTLVSKRLGDHRLKTVTPHDI 375 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +R ++L+NL A +T+S + N F + NG+ E+ Sbjct: 376 VLLPVDARLFTQVLVNLIDNAIRHSGNDTTITVSARVMGNFITFKVSDNGSGI-PEERLD 434 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + + Sbjct: 435 KIFDNFFTTAYENGDKQRGVGLGLTICKAIVEAHGGHIKAVNNEGGGTTFQVDMP 489 >gi|322421743|ref|YP_004200966.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320128130|gb|ADW15690.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 345 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 25/233 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55 + + VA++ HD+ SP+ I ++ L + + V ++ + Sbjct: 107 SDKKEKRQREEFVAMMT----HDLKSPLTVIMGYMQALMGEMPSKVDPSLHLFVKEMDKS 162 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSW 104 + + + G + D +++ ++ Sbjct: 163 AVKMLSMIDDVLDAYRLEAGLLQIDRQPCDARSLLDGCCRDGEQEAAVHGSYFLSDICDG 222 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ ++ NL A PR G ++++ N + + G E Sbjct: 223 IPTLDLDWKQITRVFANLIGNAVKFTPRRGTISVTSAIEDNCLLVQVTDTGIGIPEDELP 282 Query: 165 TQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E S LL Sbjct: 283 RIFNKYFRASGAHGFKGTGLGLTISKAIVEAHGGSIRVESAAGKGSRFSVLLP 335 >gi|224585713|ref|YP_002639512.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470241|gb|ACN48071.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 465 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMTKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 763 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 67/242 (27%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHN----------------------SLE 38 + + S+ + S + H++ +P+ I L+ Sbjct: 372 LRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQ 431 Query: 39 LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + + G M L + + I ++ ++ I + Sbjct: 432 TIQDSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQL 491 Query: 99 RVQVSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +Q+ +IL +L A P GG V + + NE IF ++ G Sbjct: 492 ELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNEAIFQVEDTGIG 551 Query: 158 ARFPEKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + Q ++ + T + L + + E I + + Sbjct: 552 IAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESILQEGSIFTVR 611 Query: 213 LE 214 L Sbjct: 612 LP 613 >gi|158334818|ref|YP_001515990.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF [Acaryochloris marina MBIC11017] gi|158305059|gb|ABW26676.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF [Acaryochloris marina MBIC11017] Length = 1633 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 72/238 (30%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50 + ++ + +L + S H+ +P+ AI + EL+ + + + Sbjct: 1386 LQQSQARE-QAEREINELKSRFISMTSHEFRTPLTAILGTTELIKHYGQGWDTNKQHTYL 1444 Query: 51 QLIRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 I+ + + ++ + + + + D++++ Sbjct: 1445 DRIQKNVKHMTGLLDDVLVLSKADVNKVEFNPKLINLEVFCSSLVEEFQLNTKRDQQIEF 1504 Query: 103 SWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++ + +IL NL A P V V ++ E F +K G Sbjct: 1505 EFFWNQHEVYSDEKILRQILSNLLSNAIKYSPESTSVRFQVNVNEEEATFFIKDQGIGIP 1564 Query: 160 FPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + V ++ + E I D L Sbjct: 1565 EADQQHLFESFHRATNVGQIQGTGLGLAIVKKSVELHRGTIDFESIADQGTTFIVKLP 1622 >gi|292490282|ref|YP_003525721.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291578877|gb|ADE13334.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 492 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 63/228 (27%), Gaps = 23/228 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM--------QLIRLS 56 L + + S + H++ P+ A+ +E +L + E + + + Sbjct: 264 LERLSTAGEMASELAHELKQPLTAVSTYIEACLRMLQRGIVSPEHLVETLENAINQNQRA 323 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLS 112 F+R + +D + + + E I + Sbjct: 324 DEIIRRLRDFIRSRETHLSLIDLNKLVRETLSLAEIEIRNSQARLRLELADSLPPLSIDP 383 Query: 113 RERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++LLNL + ++ + S+ N+ ++ G E Q Sbjct: 384 IQIQQVLLNLVRNSLEAMQDTEIGKRELTIQTSLTMENNQIEIAVSDKGAGI-SSEALKQ 442 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + D L Sbjct: 443 LFEPFFTTKVSGMGVGLSICRSIIEAHGGHIWATSNADQGATFHFTLP 490 >gi|163849032|ref|YP_001637076.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526995|ref|YP_002571466.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163670321|gb|ABY36687.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450874|gb|ACM55140.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 872 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 62/244 (25%), Gaps = 33/244 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 ++ ++ + LL I HD + + I L + +Q + Sbjct: 481 ESQMLQTQKLESLGLLAGGIAHDFNNLLTGIMGHTSLALIDLPPNHELQPHLAAIDQAAQ 540 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 ++ L + VD + ++ ++ +V + + + Sbjct: 541 RAAELCHQLLVYAGRGQRSLEVVDLSNLVREMGNILRLPTNRSHQVAIHYDLDTNLPPIL 600 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVT-------------------ISVQDSKNENIFS 150 + +++LNL A ++ + + + Sbjct: 601 VEASQIRQVVLNLLTNAIEAIGERSGSVTLRTGVASLSAADLRRLRLMPTIPPGDYVTLT 660 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + G +I D + H + V + + + E + Sbjct: 661 VSDTGIGMDEATLR-RIFDPFFSTKPKGHGLGLAAVQGIVRRHNGAIRVESTPGLGSTFT 719 Query: 211 ALLE 214 L Sbjct: 720 VYLP 723 >gi|299149224|ref|ZP_07042284.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512658|gb|EFI36547.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 541 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 363 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 I+ L+ + +T + + L + +Q+ + Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQ 423 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A P+G + + F +K G +K Sbjct: 424 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 482 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 535 >gi|258593526|emb|CBE69867.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 512 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 65/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + + S L ++ + + + H + +P+ ++ + ++ + + + E ++++ Sbjct: 271 LEETQAQLIQSEKLASIGEMSAAVAHGLRNPLASLRAAAQVTLHHVGDERVAQEHLKMVI 330 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 R+ + L + D R+++ Sbjct: 331 AEVDRLDRRISHLLAFSRPGPFRPLPEQLSRLIDDLLPAFAAPLKDRDIRLEIDLQNNLP 390 Query: 110 DLSRERAKILL---NLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFP 161 D+ + ++ +F A ++P + + GN Sbjct: 391 DVYVDPIQVEQALGEIFSNALDAMPEGGSVTIRGYRRPDNGQPGCVVLQIADTGNGI-AT 449 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + + +N L +S L Sbjct: 450 QVLPSVCDPFFTTRAEGTGLGLAIAKRYVVQNGGSLDIASTPGVGTTVSITLP 502 >gi|227506356|ref|ZP_03936405.1| sensor kinase [Corynebacterium striatum ATCC 6940] gi|227197007|gb|EEI77055.1| sensor kinase [Corynebacterium striatum ATCC 6940] Length = 452 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 59/234 (25%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSS 57 + +++ + + H++ +P+ ++ EL +D M ++ S Sbjct: 215 LQRSVVQAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATQDVDMVFSKIDDESK 274 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------I 109 +++ + L +D + A Sbjct: 275 RMSLLVEDLLALTRAEGSRLDMGTVDMLELVLSAGSSARAAFPGRQIDVVNEAADIPLVK 334 Query: 110 DLSRERAKILLNLFMVAHAS----LPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++LLNL A + + + + + +G + Sbjct: 335 GDPDRLHQVLLNLVSNALRHGGEEAKVKLTIREEAGEKGTDVLIDVADDGKGMAPEDASH 394 Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V L ++ R+ E + L Sbjct: 395 IFERFYRADTSRTRDTGGSGLGLAIVKSLVEQHGGRISVESALGEGSTFTLRLP 448 >gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 707 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 58/245 (23%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50 K L A + + + H++ +P+ +I +LL + + + Sbjct: 461 RKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVYGELNARQL 520 Query: 51 QLIRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + S S L L + D + D+ + Sbjct: 521 KAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDMLFPFAASKGI 580 Query: 97 DKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 +++ ++L NL A V + + N S+ G Sbjct: 581 KLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKASQNNNFIEVSVSDEG 640 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E ++ + V + + + + Sbjct: 641 IGI-AAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFKSEVGKGSTF 699 Query: 210 SALLE 214 + Sbjct: 700 GFSIP 704 >gi|310815828|ref|YP_003963792.1| Probable two-component sensor histidine kinase [Ketogulonicigenium vulgare Y25] gi|308754563|gb|ADO42492.1| Probable two-component sensor histidine kinase [Ketogulonicigenium vulgare Y25] Length = 344 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 62/226 (27%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ AI +E L + G+ + ++ + + + + Sbjct: 117 FVANVSHELRTPLTAIMGFIETLRGPARDDPGVRGRFLDIMEREANRMVQLVDGLLSLSR 176 Query: 73 YTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 + + + V + + + ++L Sbjct: 177 VEVDERVRPTTPVDLKALAEETIAALEPLAAQGNNTVTLHAEPGNWIVPGDIGQLHQVLR 236 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKINGNLARFPEKF---TQIVD- 169 NL A V I++ ++ + ++ G + Sbjct: 237 NLVQNALKYGGPDKNVVIALHPAQFDVALRATAVRIDVQDEGPGIEAHHIPRLTERFYRV 296 Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T+ + V + + ++ RL + S LL Sbjct: 297 DAHRARTVGGSGLGLAIVKHIVNRHRGRLAISSTPEKGSTFSVLLP 342 >gi|269796832|ref|YP_003316287.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269099017|gb|ACZ23453.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 572 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLSSMSAIIRLKFMR 68 S + H++ +P+ +I LEL++E ++++ ++ + + + Sbjct: 341 FVSTVSHELRTPLTSIIGYLELIEEGYEDSEFELTDEVHGQLEVVARNASRLLALVSDLL 400 Query: 69 LAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + D V RV V T ++ A+ Sbjct: 401 TTAQHASGTLSLRMSAGRLDEITQQSLDGVIERALGRGVQLRVDVRPTPVQMLDQARIAQ 460 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-- 175 +L NLF A P GG V + V + ++ G + + + Sbjct: 461 VLDNLFSNALKYTPSGGTVEVDVTAHSDHTSLRVRDTGIGMSESDVRSLFAKFFRAESAR 520 Query: 176 ---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + ++ + L Sbjct: 521 RAAIPGVGLGLVICKAIVEGHGGSIVVDSTLGSGSTFEVRLP 562 >gi|225155968|ref|ZP_03724452.1| PAS/PAC sensor signal transduction histidine kinase [Opitutaceae bacterium TAV2] gi|224803321|gb|EEG21560.1| PAS/PAC sensor signal transduction histidine kinase [Opitutaceae bacterium TAV2] Length = 429 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 73/235 (31%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-----------EVGIEDE 48 + + S + LL + + H++ +P+ ++ L+L++ E + Sbjct: 180 KQTTEERIESERTSSILLLAASVAHELGNPLNSLTIHLQLIERKLKKLKASSRESASLGD 239 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRV 100 +++ + + A + L +I + F + Sbjct: 240 SIRICQEEVTRLDGIVTHFLEAIRPRPPDLTETDLMEILGDVLHFQQRELEDRGIEIDAT 299 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++ N+ A ++ GG++ I G+ + Sbjct: 300 TAPDLPRVMADREQLKQVFFNIIKNAVQAMQPGGRLRIKSHTDDEHVYLLFGDTGSGIKQ 359 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ S D + + V + E+ ++ E +D V++ + Sbjct: 360 RDLV-KLFQPFQTSKSDGNGLGLMIVQRIMREHGGQVSIESREDVGTVVTLQFPR 413 >gi|57866958|ref|YP_188631.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A] gi|57637616|gb|AAW54404.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A] Length = 589 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + + + ++ S + + Sbjct: 367 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 426 Query: 74 -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNL 122 L +E + ++L NL Sbjct: 427 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYDMDRMDQVLTNL 486 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177 A G + IS+ + + NI ++ G F + + Sbjct: 487 IDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 546 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ R+ E L K Sbjct: 547 GTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPK 584 >gi|27468093|ref|NP_764730.1| staphylococcal respiratory response protein SrrB [Staphylococcus epidermidis ATCC 12228] gi|251810908|ref|ZP_04825381.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|282876083|ref|ZP_06284950.1| sensor protein SrrB [Staphylococcus epidermidis SK135] gi|293366548|ref|ZP_06613225.1| sensor histidine kinase SrrB [Staphylococcus epidermidis M23864:W2(grey)] gi|27315639|gb|AAO04774.1|AE016748_8 staphylococcal respiratory response protein SrrB [Staphylococcus epidermidis ATCC 12228] gi|251805588|gb|EES58245.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|281295108|gb|EFA87635.1| sensor protein SrrB [Staphylococcus epidermidis SK135] gi|291319317|gb|EFE59686.1| sensor histidine kinase SrrB [Staphylococcus epidermidis M23864:W2(grey)] gi|329725412|gb|EGG61895.1| sensor protein SrrB [Staphylococcus epidermidis VCU144] gi|329735207|gb|EGG71499.1| sensor protein SrrB [Staphylococcus epidermidis VCU045] gi|329737238|gb|EGG73492.1| sensor protein SrrB [Staphylococcus epidermidis VCU028] Length = 588 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + + + ++ S + + Sbjct: 366 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 425 Query: 74 -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNL 122 L +E + ++L NL Sbjct: 426 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYDMDRMDQVLTNL 485 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177 A G + IS+ + + NI ++ G F + + Sbjct: 486 IDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 545 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ R+ E L K Sbjct: 546 GTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPK 583 >gi|332704005|ref|ZP_08424093.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554154|gb|EGJ51198.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 405 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 28/232 (12%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----------------DEVM 50 + + + L + + H++ +P+ A+ E + + D ++ Sbjct: 164 QAEKMATIGVLAAGVAHEVNNPLAAVVGFAEGIKRRLPQLERTIDGELYGDLKEYTDTIL 223 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105 + L F R A V + D ++++ ++ +Q+ Sbjct: 224 KECLRCRDIVKTLLTFSRHAPASLSLVALNSVVSDTLRLLQHELSKRSGIQIKMELEESL 283 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164 + +++LNL A ++ G +T+ + ++ G PE Sbjct: 284 PVIKGNEAQLKQVVLNLLTNALDAIKDSGCITVRTFLERGARLCLEIRDTGCGI-PPEHL 342 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + I + H++ + + +L Sbjct: 343 DKLFEPFFTTKPVGKGIGIGLSTCYNIVHDHGGSIQVSSNSGQGSSFTVVLP 394 >gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6] Length = 717 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 60/242 (24%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++ + L S + H++ +P+ +I ELL + + + + Sbjct: 470 SDVTREREADRLKNEFVSIVSHELRTPLTSILGYTELLRTREFAPEERQQFITTVFNEAE 529 Query: 59 SAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ + + I Q+ I + ++ I Sbjct: 530 RLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLNTSLIKHRLLIDITGEIPPI 589 Query: 110 DLSRER-AKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNL 157 R++ +I+ NL A P + + S++ G Sbjct: 590 YADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRDLPGDHPLGQWIVVSVRDEGIG 649 Query: 158 ARFPE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + I + L + R+ Sbjct: 650 MAPEDLPRIWERFYRVDNTNTRKIGGTGLGLSISRALVELHGGRIWVTSTLGRGSRFFFT 709 Query: 213 LE 214 L Sbjct: 710 LP 711 >gi|229055161|ref|ZP_04195588.1| hypothetical protein bcere0026_2940 [Bacillus cereus AH603] gi|228721153|gb|EEL72683.1| hypothetical protein bcere0026_2940 [Bacillus cereus AH603] Length = 672 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 13/218 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + LS++DL+ + + I H+I +P+ + L+LL E I ++ + L Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEESIYEKHNKYFNLMIEELDR 505 Query: 63 ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + ++ +V + E + Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNSIIRDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171 E ++L+NL+ ++ G +TIS N + +++ G PE ++ Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGRNCVVLAVRDQGKGI-RPEVLEKLGTPF 624 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + +A + ++ + Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661 >gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 882 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + + + + + S + H+I +P+ + +LL+ + E + + Sbjct: 487 EEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTELNAEQREYVSSLK 546 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + T + L I V+ + + E Sbjct: 547 SCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAREKALRLQVEVA 606 Query: 110 DLSRE--------RAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNL 157 + +ILLNL A +GG + +++ G Sbjct: 607 PDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQPVAPPLFQMAVRDTGVG 666 Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ + LA + E + Sbjct: 667 IAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIESTPGVGSCFTLT 726 Query: 213 LE 214 L Sbjct: 727 LP 728 >gi|91794804|ref|YP_564455.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91716806|gb|ABE56732.1| signal transduction histidine kinase, nitrogen specific, NtrB [Shewanella denitrificans OS217] Length = 345 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 22/230 (9%) Query: 5 ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 NL + A L + H+I +P+G + + +LL E E+ + + A Sbjct: 116 QQLNLDAQQQAAQFLVRNLAHEIKNPLGGLRGAAQLLSRELKEPELKEFTSMIIEQADRL 175 Query: 64 LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + Q++E + + + D+S + ++ Sbjct: 176 SNLVNRLLGPQRPSQHSLHNIHQVVQKVLQLLEMTQPANVTIVRDYDPSIPDMSMDPEQL 235 Query: 119 LLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + +VT+ + K S+ NG E Sbjct: 236 QQAVINLVQNAIQSLEQCGGEILIKTRTQHQVTMGNRRHKLALALSVIDNGPGV-PSEII 294 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + +A + R+ H + L Sbjct: 295 DTLFYPMVTGREQGSGLGLSIAHNIARLHGGRIDCTSSPGH-TEFTLTLP 343 >gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 668 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/255 (10%), Positives = 56/255 (21%), Gaps = 42/255 (16%) Query: 2 AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + L + A S I H++ +P+ I +L+ + +DE + + Sbjct: 264 QRRLEAELRASKQAAEAASVAKTQFLANISHELRTPLNGIMGLTQLMLDGVADDETQEYL 323 Query: 54 RLSSMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + SA I + + + + + Q + + Sbjct: 324 GIIRQSASILMHIVGDLLDLSNVEAGRLMLVMREFDPQAELLPLLRNFSTQSMLRPFSFG 383 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------------ 145 I +I +NL A +G Sbjct: 384 YHFDPLLPARLIGDPNRIKQICINLIDNAFKYTKKGTVSVRIGLWENPGNEPPPDVAPER 443 Query: 146 -ENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLP 199 ++ G + + + LA + Sbjct: 444 IRLHIAVSDTGVGIEPSRQSAIFEPFGIGEDYLTKKYSGAGLGLTVARRLAGMMGGDITV 503 Query: 200 EIIDDHNVVLSALLE 214 E LE Sbjct: 504 ESEPGQGSTFYLTLE 518 >gi|322421319|ref|YP_004200542.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127706|gb|ADW15266.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1004 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + ++ ++ + +L I HD + + AI + EL L E +Q I SS Sbjct: 617 EAQMLHVQKLESLGVLAGGIAHDFNNILMAIMGNAELALMRLPEESEARTNLQNIEKSSK 676 Query: 59 SAIIRLKFMRLAF----GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + M D + ++ ++E I+ ++ + + + + Sbjct: 677 RAADLAQQMLAYSGKGSFVIEEFDVNALIMEMGHMLEVSISKKVVMRFNLAADLPLVEVD 736 Query: 115 RAKILLNLFMVAHASLPRGGK----------------------VTISVQDSKNENIFSLK 152 +I + + + G + F + Sbjct: 737 ATQIRQVVMNLVINASEAVGDQKGVITITTGTKHCDAAYLSGLWINDQLQEGDYVYFQVT 796 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +G +I D + + V+ + +K + + Sbjct: 797 DDGCGM-DEATRARIFDPFFTTKFTGRGLGMAAVLGIVRGHKGTIEVRSEPGAGSTFTVY 855 Query: 213 LE 214 L Sbjct: 856 LP 857 >gi|237709891|ref|ZP_04540372.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA] gi|237725439|ref|ZP_04555920.1| two-component system histidine kinase [Bacteroides sp. D4] gi|229436126|gb|EEO46203.1| two-component system histidine kinase [Bacteroides dorei 5_1_36/D4] gi|229455984|gb|EEO61705.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 494 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 54/221 (24%), Gaps = 16/221 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLK 65 S L + + + H+I +P+ AI LL + E + +I + ++ + Sbjct: 268 QSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSEEMDGEESKEFVSIINQNCEQLLVLIS 327 Query: 66 FMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + L + + + + E + + Sbjct: 328 DIIDMSKIESNSIEFKIQKQSLHQILSEIYQCQSLNIPSKIEFRLELPEEDTEIMIDTTR 387 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 +++ NL A G S +K G + Sbjct: 388 FKQVINNLINNAIKFTMYGHITLGSKILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMD 447 Query: 175 TI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + I+ + + Sbjct: 448 SFKPGAGLGLSICKTIIEHMQGEINVTSIEGKGSNFTITIP 488 >gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1260 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 27/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + +R+ H+I +P+ AI E+L E + ++ + ++ S + Sbjct: 381 AKDQADKATRSK--SEFLARMSHEIRTPMNAILGMAEMLQETSLNEDQQEYVKTFSSAGE 438 Query: 62 IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 + L + ++ + + D+ ++ +K+V Sbjct: 439 LLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNKLFVYRAEEKALRLEKKVSEGLA 498 Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161 I +I++NL A + D +F++K G Sbjct: 499 QRYIGDPTRIRQIIINLVGNALKFTSVGGVTMSVTESVMDDGAPCCLFAVKDTGIGIPKS 558 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + L ++ E L Sbjct: 559 KLGTVFESFAQADSSTTREFGGTGLGLAISKKLVELMGGQIWVESEPGQGTTFFFKLP 616 >gi|218437050|ref|YP_002375379.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218169778|gb|ACK68511.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 387 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 59/236 (25%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + L + +L L S + HD +P+ I S LL++ Q + M Sbjct: 147 QERTAELLKAKELNQLKTEFVSMLSHDFRNPLNTILLSAGLLEDSSDRLTKEQQLTYFQM 206 Query: 59 SAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ I + ++ + Sbjct: 207 IRTAIKDMDQLLTEVLIIGRADSGRLKLNPIPLNLKEFCQYIIDSFRINLIPSHQLIFNS 266 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 G + + L A P GGK+ + + + I S++ G Sbjct: 267 QGNFEQGLWDENLLRHILNNLLGNAIKYSPEGGKIRVDLIEKGERVILSVEDQGIGIPLE 326 Query: 162 EKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + ++ + V + ++ + L Sbjct: 327 DQQKLFKPFFRANNVENIAGTGLGLAIVQRCVETHGGQIEVKSQVGEGTTFIVTLP 382 >gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 935 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/262 (9%), Positives = 59/262 (22%), Gaps = 51/262 (19%) Query: 5 ICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVM 50 L + L + + + H+I +P+ A+ +LL + + + Sbjct: 564 RAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGYSDLLSNTVKDPQQRNYLD 623 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRV 100 + S ++ + L+ G + + I + + V Sbjct: 624 AIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGISLEV 683 Query: 101 QVSWTGE--KIDLSRERAKILLNLFMVAHASLPR--------------------GGKVTI 138 V + ++L NL A + Sbjct: 684 SVDSKMPAAMMLDETRLRQVLFNLVGNAIKFTHEGGVTVRATATPRKSSEKQPVEETASE 743 Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHEN 193 + + ++ G ++ +G + L Sbjct: 744 VDRRCFYRLVVTVSDTGIGIPPDQQEQIFDAFEQQEGQNTRRYGGTGLGLAISRKLVRMM 803 Query: 194 KIRLLPEIIDDHNVVLSALLEK 215 L E + L + Sbjct: 804 GGELQVESEPGAGSTFTVKLPR 825 >gi|91201266|emb|CAJ74326.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 470 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQL 52 + I L ++ S + H++ +P+ A+ +E++ E+++ Sbjct: 229 LTDTINLMLDRLEDAFRKIIQFTSDVSHELRTPLAALKAGIEVMLAKQRTPEEYCELLEN 288 Query: 53 IRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + I + + + F L L QVI + +D + Sbjct: 289 NLIEHEKIINMINDLLVLLKTDAAKQEFYDVDLKKMLCELYTAFQVITETKKIDCTISKM 348 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ NL A GG + IS++D +NE I S++ +G + Sbjct: 349 ENITIDGDQKLLYRLFSNLLDNAIKYTSPGGNICISLKDLENEVIVSIRDSGIGISENDH 408 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +A +K ++ + L K Sbjct: 409 NKIFDRFFRVDASRSRDTGGVGLGLSICKNIADLHKGKIEVKSTIGKGSAFLVTLPK 465 >gi|28868185|ref|NP_790804.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|213970143|ref|ZP_03398274.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] gi|301384665|ref|ZP_07233083.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13] gi|302059530|ref|ZP_07251071.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40] gi|302134198|ref|ZP_07260188.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851422|gb|AAO54499.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|213925024|gb|EEB58588.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] Length = 982 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V + + Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEASEHTVDLIVEDEGSGI-SKAIMDRLFE 921 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|327540634|gb|EGF27208.1| PAS/PAC sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 410 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 66/233 (28%), Gaps = 26/233 (11%) Query: 8 NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAI 61 L L AL L + + H+I +P+ I N+ LL + + LI Sbjct: 170 RLKMEKLAALGELAAGVAHEINNPLAGIRNAFALLKRHLPSNVKHYDKLDLIDGEIERIR 229 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKID-------- 110 M + + + + + + ++ +V+V E + Sbjct: 230 GITHQMFQLYRPSQQKAVVFNVRRCLEELMSLALPMSRKFKVKVKLECEALPATKELGVD 289 Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 E +ILLNL A + +V + V + + + + G + Sbjct: 290 EVLLREGELKQILLNLVHNAIQASSPDQEVQLVVTATDDALVLRVVDRGCGI-ANDVIDS 348 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + L + + + L + Sbjct: 349 IFDPFFSTKTTTVGQGMGLGLSVTRGLIEAMRGSIDVSSEPNEGTEFCVQLPR 401 >gi|303247150|ref|ZP_07333425.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491576|gb|EFL51461.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 801 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/266 (10%), Positives = 64/266 (24%), Gaps = 55/266 (20%) Query: 2 AKNICFNLSSMDLV--------------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47 + L +++L A L S + H++ +P+ +I +L+ + Sbjct: 497 ERTRDLRLQALELAEANIRLSELDRLKSAFL-STVSHELRTPLTSILGFAKLIGRDFNDQ 555 Query: 48 E-------------------VMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSL 80 + ++ + + + L Sbjct: 556 FLPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLDLNRIESGNMHWRDTRFNPL 615 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLNLFMVAHASLPRGGK 135 LG I+ ++ + + +++ NL A G Sbjct: 616 EVLGKAANSIKGLLSQRPEITFVLEMNEDVPEVRMDPDQLIQVVTNLLQNAVKFTR-EGT 674 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-------SHDIQFYYVIL 188 V ++V+ ++ +G E + D + Sbjct: 675 VRMTVRREGEAVELAIADSGIGIPPGELEAIFGKFHQVGRSDTMGETTKGTGLGLAICRQ 734 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + R+ E V LL Sbjct: 735 IVRHYGGRIWAESQLGQGSVFYVLLP 760 >gi|126666428|ref|ZP_01737407.1| sensor histidine kinase [Marinobacter sp. ELB17] gi|126629229|gb|EAZ99847.1| sensor histidine kinase [Marinobacter sp. ELB17] Length = 572 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 81/231 (35%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSM---DLVALL---CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 M + + SM + A+L + + H+I +P+ I +++ L + + +L+ Sbjct: 338 MRLRLKRLVKSMVDVERRAVLGQFSAGVAHEIRNPLATIKTTIQALSRKESDPKRQKLME 397 Query: 55 LSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + R G V+ L + ++ + + + + Sbjct: 398 SVDREIDRVNDVVQLLLDYARPREATAGKVNVLDVVETVKILADAIAHSHRVELIQIEHP 457 Query: 108 KIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++I + + ++ GG+VTI V+ S+ NG E Sbjct: 458 PVFAWADPSQIRQIVMNLVMNAIQALEGMGGRVTIRVKQHGLAVYISVSDNGPGV-TSEH 516 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + I+ + LA NK L + + + ++ L Sbjct: 517 LSHLTEPFFTTKINGTGLGLAICKQLAQANKGNLRFQSVSGEGLKVTLQLP 567 >gi|229170813|ref|ZP_04298427.1| hypothetical protein bcere0007_57120 [Bacillus cereus AH621] gi|228612651|gb|EEK69860.1| hypothetical protein bcere0007_57120 [Bacillus cereus AH621] Length = 801 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 63/225 (28%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--VMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL ++ + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETKNNRGYINIVSSEIE 631 Query: 59 SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + ++++ +T + + Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDISVLMDQGLMLLQPQAMMNNIQIRIDFTPDIPLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795 >gi|323702488|ref|ZP_08114152.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532627|gb|EGB22502.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 487 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 +A + +S ++ + + + H+I +P+ + E + + DE + Sbjct: 241 LASRLQEKISQLEKQEQIRREFVTNVAHEIKTPLAVMQGFTETMIDGLVKTEQERDEYLN 300 Query: 52 LIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 I + + L G D D+ ++I+ ++ V Sbjct: 301 NILEEINRLKRLVNEVLDLKRMEEGHFDFDQEPCDLREIIDRVRRKLTQLAVEKDIHFEI 360 Query: 109 ---------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 S ++L+NL A GG+V + V N+ + G Sbjct: 361 GVEKNLPLVTCNSDRIEQVLINLIDNAIRHTHTGGRVILRVSSKANQVHLRISDTGEGIA 420 Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + G+ + V ++ + ++ + + + +L Sbjct: 421 PEDLPMIWERFYKGDKSRTRARGGTGLGLAIVKMIVEGHGGQINVDSKLNVGTTFNIVLP 480 >gi|301309247|ref|ZP_07215191.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300832929|gb|EFK63555.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 846 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 65/233 (27%), Gaps = 22/233 (9%) Query: 2 AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + L + L + + + H+I +P+ AI ++ E+ E E + + Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + L+ + VD G+I + D + Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVDLIFDLDS 592 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + +++ N A +G + + +K G E Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + ++ + + ++ + + L Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLP 703 >gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 752 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 28/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----------GIEDEVM 50 K S ++ + + H++ +P+ AI+ E+L + G ++++ Sbjct: 505 EKTKAEKASQAK--SVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAEDIL 562 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQV 102 + L ++ G I + I Sbjct: 563 SSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNLTVK 622 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + R +++LNL A GG + ISV S+ NG + Sbjct: 623 DDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISVVKENAFVRVSVADNGIGIPKQD 682 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + A + RL E +S LL Sbjct: 683 IP-RLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLP 739 >gi|253565168|ref|ZP_04842624.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251946633|gb|EES87010.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 565 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ + +E + IR+ + + Sbjct: 323 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 382 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L+ + ++ + + L + + VQ+ +T ++ Sbjct: 383 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 442 Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++++NL A G K+E F +K G + Sbjct: 443 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 502 Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + L Sbjct: 503 KVFERFVKLNTFVKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 553 >gi|258514259|ref|YP_003190481.1| sensory histidine kinase AtoS [Desulfotomaculum acetoxidans DSM 771] gi|257777964|gb|ACV61858.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 622 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 68/227 (29%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSS 57 + +++ L +L L + + H+I SP+ +I ++ ++ + + ++ Sbjct: 385 LRESVN---RQKRLASLGKLVAGVAHEIRSPLTSITGYMQFWNKGRVPSSKSLNIVNQEL 441 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 I + + +V + + Sbjct: 442 NRLISVTDKLLQFARPSRAVFEPYELNILIRRAVQFFRDIHGSSDVKISCNCAENLPLAW 501 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L N+ A+ ++ R G + I+ +N ++ NG + + Sbjct: 502 IDAHQMEQVLSNILYNAYQAINRTGNLEITTWLEKERNMLCVGVRDNGCGI-PKDVIQNM 560 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + ++ L Sbjct: 561 FEPFYTTKSKGTGLGLSIAKEIISAHNGEIQVESELNVGTMVVIYLP 607 >gi|154688131|ref|YP_001423292.1| putative signal transduction histidine kinase [Bacillus amyloliquefaciens FZB42] gi|154353982|gb|ABS76061.1| putative signal transduction histidine kinase [Bacillus amyloliquefaciens FZB42] Length = 472 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 56/236 (23%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQ 51 M + I + + S H++ +P+ +IH +E+L E +Q Sbjct: 236 MLERIETSFQAEKEAKERIRQFVSDASHELKTPLTSIHGFIEMLMRGAAEKPEQKEKALQ 295 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVS 103 + S A ++ + + L Q+ V Sbjct: 296 SMYAESARANKLIEDLLFLAKIDRVPSFEMKKGALGDVILEMEAQLKLLGRNRKLEFFVD 355 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E + + +++LNLF A V + + NG Sbjct: 356 QKIEAVFDKDKMKQVILNLFYNAVQHTDEDTGVITVSLQKDGGIMLMIADNGTGIAPEHV 415 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V L Sbjct: 416 PHLFDRFYRAETSRSRQSGGAGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471 >gi|71909170|ref|YP_286757.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71848791|gb|AAZ48287.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 512 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 18/232 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMS 59 A+ + + L + + S + HD+ +P+ A+ + L + + ++ + Sbjct: 270 AQASEVKMLTERLRSSILSALSHDLRTPLTAMVGLADSLFLIKPALPATALETAQALHEQ 329 Query: 60 AIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKI 109 A + +A G V +E+V+ I V+V + Sbjct: 330 ADRLAGLVGNLLDMARLNAGEVTLRREWQPLEEVVGAGIKLLGSALASHPVKVELPRDLP 389 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163 L + ++L NL A P G + ++ + + S+ +G + Sbjct: 390 LLEFDAVLIERVLCNLLENAAKYSPDGTPLLLAAEQEMDVVRVSISDHGPGFPAKRRDDL 449 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F V G ES + + + + + D +S L K Sbjct: 450 FKMFVRGESESGKPGTGLGLAICKAIVEAHGGTITADNRPDGGACVSFTLPK 501 >gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] Length = 949 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRTDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|301063084|ref|ZP_07203645.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300442804|gb|EFK07008.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 486 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 15/227 (6%) Query: 2 AKNICFNL-SSMDLVALLC--SRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 K + NL S L A+ + + H+I SP+ I + E + + +I Sbjct: 260 QKKLEENLLRSGRLAAVGTTVAHVVHEIKSPLMIIGGFSHQIRNSLEDENAIKKLDMILD 319 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGE 107 + + V + + Q + K S E Sbjct: 320 EVSRLERLVASLGDFTKVYNLVTRPADINSVIQDVLKIFSGIYPPEKYTMKAELASNLTE 379 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++++N+ ++ G ++I + + + G + I Sbjct: 380 IQCDPDKLKQVVINIITNGIEAMEESGSISIKTKGCEGGVKIQISDEGIGISDEDIL-HI 438 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E + L Sbjct: 439 FEPFYTTRDRGSGLGLAISYKIVEAHGGELWAESVKGKGTTFFMRLP 485 >gi|283852256|ref|ZP_06369528.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283572338|gb|EFC20326.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 712 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 72/251 (28%), Gaps = 38/251 (15%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + + + + +L L + H+I +P+G I +LL E D + Sbjct: 445 LKQFQEQLIQAQKMESLGKLAGGVAHEINTPLGVILGYSQLLQEDVPPDSQILVDLQTIE 504 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKI 109 + ++ L F R A + L + ++ ++D+ + Sbjct: 505 KQAKVCRKIVADLLGFSRQAESAKIEMCFNNSLMEAVTLVRHAFSLDQAAIATDLDERMP 564 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ +NL A +L R G + ++ + G P+ Sbjct: 565 IIYGDPEKLKQVWINLLANARDALDRKGGTLLVRSRLFAAEQKVTAWFADTGPGI-SPDN 623 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI------------------ID 203 ++I D + + + ++ + Sbjct: 624 QSRIFDPFFTTKPVGQGTGLGLSVSFGIIKDHGGTITVASPVPAGFFDAALPADDSGNGA 683 Query: 204 DHNVVLSALLE 214 V + L Sbjct: 684 GPGTVFTVDLP 694 >gi|253577258|ref|ZP_04854577.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843372|gb|EES71401.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 368 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 68/223 (30%), Gaps = 19/223 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 + L L + + I H+I +P+ AI ++LL ++ + R+ + Sbjct: 144 QNDKLAMLGKISAAIAHEIRNPLTAIRGFIQLLRPHLLQLGKDEYARIILTEIDRANDII 203 Query: 68 RLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + ++ + + + ++ + E++ +S + +I Sbjct: 204 HEFLNSSKPSAPQKSTVNVSSLLKEVVLLTESEALMKGCQMILHEPNEELLVSIDVKQIK 263 Query: 120 LNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 L + ++ G + I + S++ NG ++ D Sbjct: 264 QVLLNIIKNAMDAIAEVGGDHQGVIDIRAEKEGKSVCISIQDNGGGMDKGMLS-RLFDPF 322 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + + + + L Sbjct: 323 FTTKEKGTGLGLSVSYRIIRNHRGNISVDSLKGARTIFTVSLP 365 >gi|227502104|ref|ZP_03932153.1| sensor kinase [Corynebacterium accolens ATCC 49725] gi|227077163|gb|EEI15126.1| sensor kinase [Corynebacterium accolens ATCC 49725] Length = 508 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 63/230 (27%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58 + +++ + + H++ +P+ ++ EL D + I S Sbjct: 272 LQRSVVTAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATNDVDLVFSKIDKESK 331 Query: 59 SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + RL ++ + +G + V Sbjct: 332 RMSLLVEDLLALTRAEGTRLDLRPVDLLELSLSVGSSARAAFPEREVKVVNNAQSIPVVN 391 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 + ++LLNL VT+ ++ + + + +G + F + Sbjct: 392 GDADRLHQVLLNLISNGLRHGGEDATVTLQLRRDNKDILVDVIDDGKGMSSEDAAHIFER 451 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ + + + L Sbjct: 452 FYRADSSRTRDTGGSGLGLAIVHSLVEQHGGSISVDSKLGQGTTFTVRLP 501 >gi|261368363|ref|ZP_05981246.1| putative sensor histidine kinase [Subdoligranulum variabile DSM 15176] gi|282569604|gb|EFB75139.1| putative sensor histidine kinase [Subdoligranulum variabile DSM 15176] Length = 363 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S + H+I +P+ I N+ ELL + + + Q + + A RL + Sbjct: 141 SNVSHEIKTPLAVIQNNAELLQKKQLTEAQRQECTETILQATRRLSSL--ITNMLKLNKL 198 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-----------------ILLNL 122 + + D + + + + NL Sbjct: 199 EKQVIQPLPQVYDVCNQLCNCALQFENIWEKKQIDFEAEIEDRALLCADEGLLELVWTNL 258 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSH 179 A P GG+VT++ E ++ G + F + G+ + + Sbjct: 259 LSNALKFTPEGGRVTLAQTSDDREITVTVADTGCGMDEATLQKIFDKFYQGDTSHATEGN 318 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + + + Sbjct: 319 GLGLALVRRILELSDGTITVTSTPGSGSSFTVKIPR 354 >gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter litoralis KT71] gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter litoralis KT71] Length = 508 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 21/248 (8%), Positives = 70/248 (28%), Gaps = 34/248 (13%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + I + + + + + H++ +P+ AI E+L + ++ + Sbjct: 251 LRRAIDEEIDAKQSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDEAPVDRE 310 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105 + S I L +L +D ++ + + + ++ Sbjct: 311 QYQSDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVREAFHPGEALTMAVDALAPLLRR 370 Query: 106 -------------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSL 151 + + + + ++++NL A +G + ++ + + ++ Sbjct: 371 NGNVLECDDFSDLPQIHNDAVKFRQVIVNLLSNAAKFTEQGVIRVSASFEASSAQLSIAV 430 Query: 152 KINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G + F V ++ + + + Sbjct: 431 SDTGIGMTEEQQALVFDAFVQAEDTTSNTYGGTGLGLAICRDFCELMGGTIAVQSSPGEG 490 Query: 207 VVLSALLE 214 V + L Sbjct: 491 SVFTVSLP 498 >gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. 493-89] gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. H 2687] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 533 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLIESDDKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + +++ N A G + +++ F++ G + Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 S + + + E Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGVGSRFWFT 526 >gi|259416197|ref|ZP_05740117.1| periplasmic sensor signal transduction histidine kinase [Silicibacter sp. TrichCH4B] gi|259347636|gb|EEW59413.1| periplasmic sensor signal transduction histidine kinase [Silicibacter sp. TrichCH4B] Length = 658 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + + S L ++ + + + H+I +P+ I +++++ + LI Sbjct: 414 LEETFRQLVMSEKLASIGEITAGVAHEINNPVAVIQGNVDVMRMTLGEAAEPVRTELDLI 473 Query: 54 RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104 M + + + VD + D +++ I+ + Q Sbjct: 474 DNQVMRIGAIVGKLLQFARPSEFGTFAEHVDVAAVVRDCLVLVDHVISKQEVRVLTQFDD 533 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARF 160 E ++++N+ + A ++ G + I+V ++ + + G Sbjct: 534 APCVRIDPGELQQVVINIIINASQAMDGNGTLAITVASAERDAQMGVALRIADTGPGIPA 593 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L R+ L Sbjct: 594 DRIDHIFDPFFTTKQGEGTGLGLSISQTLIQRAGGRITVRNRRARGAEFLIWLP 647 >gi|212693148|ref|ZP_03301276.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855] gi|212664253|gb|EEB24825.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855] Length = 494 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 54/221 (24%), Gaps = 16/221 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLK 65 S L + + + H+I +P+ AI LL + E + +I + ++ + Sbjct: 268 QSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSEEMDGEESKEFVSIINQNCEQLLVLIS 327 Query: 66 FMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + L + + + + E + + Sbjct: 328 DIIDMSKIESNSIEFKIQKQSLHQILSEIYQCQSLNIPSKIEFRLELPEEDTEIMIDTTR 387 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 +++ NL A G S +K G + Sbjct: 388 FKQVINNLINNAIKFTMYGHITLGSKILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMD 447 Query: 175 TI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + I+ + + Sbjct: 448 SFKPGAGLGLSICKTIIEHMQGEINVTSIEGKGSNFTITIP 488 >gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 554 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 54/221 (24%), Gaps = 25/221 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 A L + + H+I +P+ + + + + + + + S L + + Sbjct: 184 AFLAA-MSHEIRTPLNGVLGMAQAMAMEDLPPHQRERLEVIRQSGESLLAILNDLLDLSK 242 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRERAKIL 119 + L D E I++ V+ +IL Sbjct: 243 IEAGKLELEDAEFDIQELARGAHATFVAVAEARGLAFEVAVAPAARGVYRGDPLRVRQIL 302 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173 NL A G + ++ G PEK ++ Sbjct: 303 HNLISNALKFTEAGSVRVTVGRSGGA-LSLVVQDTGIGI-PPEKAARLFQKFEQADASTT 360 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA + E + LL Sbjct: 361 RRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATFTVLLP 401 >gi|218441466|ref|YP_002379795.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218174194|gb|ACK72927.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 376 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 + K L + S H+ +P+ I +LL + + ++ I+ Sbjct: 139 LRKEAEIQSQ---LKSQYISLASHEFRNPLTNIKAWAQLLQLYGHTWSEEKQQKSLERIQ 195 Query: 55 LSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 +++ L+ + + + V + + I + + ++ E Sbjct: 196 IAAEQMNQLLEDISTLGRTDIDKNFFHPVQINLSQFCENLLKIHQIMIGDKYSLTLICEG 255 Query: 109 ID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A +L NL P GGK+ + + + E I ++ G + Sbjct: 256 NCEEIYLDEHLLAHLLNNLISNGVKYSPHGGKIILKLSCQETEIILQVQDQGIGIPQGDL 315 Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + + + + + L + Sbjct: 316 HHLFEPFQRATNVGSIPGTGLGLVIVKRVVELHGGTINIQSKEGKGTTFIIRLPR 370 >gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1125 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 59/247 (23%), Gaps = 36/247 (14%) Query: 3 KNICFNLSSMDLVA---------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + L L A L + + H+I +P+ AI +LELL + + Sbjct: 499 QALQHQLRHAKLAADQANAAKSAFLAA-MSHEIRTPLNAILGNLELLGHSALNPLQRDRL 557 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------- 102 S+ L ++ ++ + L + + D I + Sbjct: 558 DTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAPAAHLKRIALV 617 Query: 103 -----SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLK 152 + A+++ NL A +G V + + Sbjct: 618 GQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQGRVTLSLDVERLPCARGGMLVIEVA 677 Query: 153 INGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G T + L + + + Sbjct: 678 DTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRLVTQMGGTIDVQSEPGQGS 737 Query: 208 VLSALLE 214 + + Sbjct: 738 RFTVRMP 744 >gi|299535467|ref|ZP_07048789.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus fusiformis ZC1] gi|298729228|gb|EFI69781.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus fusiformis ZC1] Length = 511 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + + +++I S + ++ + Sbjct: 292 FVANVSHELRTPITSIKGFSETLLDGAYKDEKMLISFLEIIYKESNRLQMLIQDLLELSK 351 Query: 68 ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + G D LI ++ D + +V + + + + +I+ N Sbjct: 352 IEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIERDVQVMGDANRIIQIVTN 411 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176 L A P V+I +++++ I ++ G E F + Sbjct: 412 LITNAITYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNS 471 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + R+ E + ++ K Sbjct: 472 GGTGLGLAIVKHLVEAHHGRIQVESEVGIGTKMIVMIPK 510 >gi|283470770|emb|CAQ49981.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B) [Staphylococcus aureus subsp. aureus ST398] Length = 564 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 405 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 + + L D ++ A D + +++ ++L NL Sbjct: 406 AEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562 >gi|258423145|ref|ZP_05686038.1| sensor protein srrB [Staphylococcus aureus A9635] gi|257846595|gb|EEV70616.1| sensor protein srrB [Staphylococcus aureus A9635] Length = 582 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 + + L D ++ A D + +++ ++L NL Sbjct: 424 AEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 483 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580 >gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas ingrahamii 37] Length = 1574 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 28/237 (11%) Query: 5 ICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + + ++ + + + H+I +P+ AI EL + ++ + S Sbjct: 816 MNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTPQLRDYLSKIHSSGNSL 875 Query: 64 ----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + V I + E I + + Sbjct: 876 LGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPDVPWH 935 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEK 163 + +I NL A +G + D + +FS+ G ++ Sbjct: 936 LVGDPLRTGQIFTNLINNAIKFTNKGQITICASCLEKDDKQVRLLFSVADTGLGI-PKDR 994 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L E R+ E V S LE Sbjct: 995 IASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSVFSFELE 1051 >gi|91789364|ref|YP_550316.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91698589|gb|ABE45418.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 521 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +A+ + L +L A + + HD+ P+ AI ELL ++ + Sbjct: 275 LAEKDNYELKGAELEAF-ATAVSHDLRGPLQAIAGFSELLARSQRERLDASGQLFLDRVH 333 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTG 106 SA+ + G+ S + + Sbjct: 334 ASALQMGCMVEDYLGFLKSNREQTLSVTELDLKHLAHAVFAELALVPGQKPAQFVCEELP 393 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLA-- 158 ++L+NL A + + V ++ + F ++ NG Sbjct: 394 RAWGDEAMLRQVLVNLIGNALKYSAQREHPMVEVGAIAGEEAGEDCHTFFVRDNGAGLDL 453 Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + V + + R+L E D L Sbjct: 454 ANAAKLFEPFQRFHSTAEFPGTGVGLAIVKRIVERHGGRMLAESQPDAGATFFFTLP 510 >gi|299534531|ref|ZP_07047863.1| sporulation kinase A [Lysinibacillus fusiformis ZC1] gi|298729904|gb|EFI70447.1| sporulation kinase A [Lysinibacillus fusiformis ZC1] Length = 492 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 61/216 (28%), Gaps = 12/216 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR 63 ++++V + + I H+I +P+ ++ ELL ++ M L + Sbjct: 256 QALNVVGQMAASIAHEIRNPLTSLKGFTELLKLNADDESRMYLSVIDSELQRMEQILSEL 315 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 L + ++ + + + + D + + +Q T ++ + ++ L Sbjct: 316 LVLSKPTTMKVELLELDHIVKQVIEFMLPDALMKNIMIQYISTSNQVYIGGNENRLKQVL 375 Query: 123 FMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 + ++ + +K G + + Sbjct: 376 MNLIKNAMESMNNGGTITVEMATNDCAIVELMIKDEGVGMDSTTL-QNLFQPFYTTKSTG 434 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +V + E++ + Sbjct: 435 TGLGLAFVKKVIEEHEGVIGVSSELQKGTCFHLQFP 470 >gi|260772818|ref|ZP_05881734.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260611957|gb|EEX37160.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 684 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + ++ L AL L + I H+I +P I + EL+ + + ++ Sbjct: 434 LNQTRNKLIAHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELADQAPRVAEEIEAI 493 Query: 59 S--------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R ++ + + + + V+ Q+ Sbjct: 494 LLQVDRIRNITRSLLQYSRHGGVQDKITWQRVNPIIEESITLVKAGSKKREVEFITQLQA 553 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +IL+NL + A ++ G++ I +D + + I ++ +G Sbjct: 554 RCSVEVNHHHLLQILVNLQINAIHAMQGKGQLIIHSEDWQQDGKILGAIIHVQDHGCGI- 612 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ ++I + + L + + ++ S L Sbjct: 613 KPEQLSKIFAPFYTTKRQGTGLGLSVSQSLLSQVGGEIRVHSVEGQGSTFSVYL 666 >gi|60682677|ref|YP_212821.1| putative two-component system, sensor kinase [Bacteroides fragilis NCTC 9343] gi|60494111|emb|CAH08903.1| putative two-component system, sensor kinase [Bacteroides fragilis NCTC 9343] Length = 543 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ + +E + IR+ + + Sbjct: 301 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDVEEKEEYIRIVTSNN 360 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L+ + ++ + + L + + VQ+ +T ++ Sbjct: 361 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 420 Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++++NL A G K+E F +K G + Sbjct: 421 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 480 Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ + E + L Sbjct: 481 KVFERFVKLNTFIKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 531 >gi|205354425|ref|YP_002228226.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274206|emb|CAR39224.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 463 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 238 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 297 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 298 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 357 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 358 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 416 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 417 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 456 >gi|197249706|ref|YP_002149081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213409|gb|ACH50806.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 465 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 932 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 56/234 (23%), Gaps = 24/234 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMS 59 + S L + I H+I +P+ I ELL E + E ++LI S Sbjct: 556 SKEKAEESDRLKTAFLANISHEIRTPMNGILGFAELLKEPHLSGEEQAEYIELINQSGKR 615 Query: 60 AIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------SWT 105 + + + + L + A + Sbjct: 616 MLALINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPLAANKNLLLSCNNGLSDEE 675 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 S + +IL NL G ++ FS+ +G Sbjct: 676 CVIETDSAKLTQILTNLVQNGLKFSVEGEVRVGYIRKEDL-LEFSVSDSGIGIPESMKES 734 Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + E + + L Sbjct: 735 IFERFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVESGEGNGSTFIFTLP 788 >gi|108760350|ref|YP_632615.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108464230|gb|ABF89415.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 615 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + + + L A+ L + + H+I +P+ I +++LL + E ++ I Sbjct: 382 LKAAQAQLVEAQKLAAVGQLGAGVAHEINNPLAGILGNVQLLMLDRGAADPDLESLRKIE 441 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------RVQVSWT 105 S+ + + + + + + V Sbjct: 442 QSAKRCKEITQNLLRFSQQRERAELRPVDLNAVVRDALSLTEHQLRGDGVALTSVLGDGL 501 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEK 163 ++++L L A ++ + + + ++ G Sbjct: 502 ARVRADPGHLSQVVLALVSNARTAMLNSPEKRLTLRTGEVGGFGFLEVEDTGKGIAPN-V 560 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++I + + + + + E + + + L K Sbjct: 561 RSRIFEPFFTTKDVWSNVGLGLSVAWRVVTEAGGSIEVRSEVEQGSCFTVKLPK 614 >gi|89068749|ref|ZP_01156135.1| Sensory transduction histidine kinase [Oceanicola granulosus HTCC2516] gi|89045712|gb|EAR51774.1| Sensory transduction histidine kinase [Oceanicola granulosus HTCC2516] Length = 480 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + + +++ L + + H++ +P+ +I SL+L++ G + + Sbjct: 211 LEREHERAKAALVLRTQFVAIVSHELRTPLTSIKGSLDLINSGRFGDFPPQAKSLLQMID 270 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------------DKRVQ 101 RL + ++ + + + + +V Sbjct: 271 RNSRRLADLVDDLLDLQKLEEGRMTFEKKTIDIRTFIADALTSHEGLAKRYDVRLNVKVD 330 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L N+ A P G V I + ++ G Sbjct: 331 CANPVYVHTDPSRLMQVLGNIISNAAKFSPENGDVDIWLDVENGRVRVYVRDRGVGIPPG 390 Query: 162 EKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K +D + + + + + E L Sbjct: 391 QKEAVFGRFTQIDASDQRKFGGTGLGMNISREIIEAIGGTIDYESEVGKGTTFVIELP 448 >gi|324325456|gb|ADY20716.1| sporulation kinase B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 402 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSGTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|303232478|ref|ZP_07319166.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Atopobium vaginae PB189-T1-4] gi|302481402|gb|EFL44474.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Atopobium vaginae PB189-T1-4] Length = 548 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 62/235 (26%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA + ++ L S + H++ +P+ A+ ++E + + ++E + + Sbjct: 302 MASELERDIKFEH---RLTSDVAHELRTPLMAMLATVEGMQDGVLPADNEHYETVAAEVR 358 Query: 59 SAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + M V SL+ + Sbjct: 359 RLSRLVDAMLRLSRIENGTRALKIETSDAVYLVKSLVAMQQQMFSERGLRLRFDDKTNEH 418 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 S + + N+ A P G V + +++E + G + Sbjct: 419 ECMVEMDSDLIREAVTNILSNALRYTPSDGWVVAGISKTRSEVNIFVSDTGIGIAKEDIP 478 Query: 164 --FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + ++ R+ E + + Sbjct: 479 RVFARFWRSDASRGRVSGGLGIGLALTKEIIDKHHGRISVESTLGKGTTFTLSIP 533 >gi|237749393|ref|ZP_04579873.1| osmosensitive K+ channel signal transduction histidine kinase [Oxalobacter formigenes OXCC13] gi|229380755|gb|EEO30846.1| osmosensitive K+ channel signal transduction histidine kinase [Oxalobacter formigenes OXCC13] Length = 895 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLS 56 A+ + S L L S I HD+ +P+ A+ + L + E++ I S Sbjct: 652 AQKTVVQMESEKLRNSLLSAISHDLRTPLAALVGLADTLKLTSPDAKASEKEIIDSIHHS 711 Query: 57 SMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 +M + + L + + ++ + V Sbjct: 712 AMRMNDLVNNLLDMARLESGTVQLNRQWQPLEEVIGSALSSCSSLLKERPINVQLDDSLP 771 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 ++ + ++L N+ A P + I+ I ++ +G Sbjct: 772 LVNIDAVLIERVLANILENASKYTPAHSSIEINGFRQDGNIIITIDDHGPGLPPGRENTI 831 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ E+ + + + + E + + L Sbjct: 832 FEKFERGSKENATPGVGLGLAISKAVMKAHGGSIEGESRYNGGARFTLRLP 882 >gi|228998513|ref|ZP_04158101.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17] gi|229005989|ref|ZP_04163679.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4] gi|228755257|gb|EEM04612.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4] gi|228761238|gb|EEM10196.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17] Length = 449 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + +S + S + H+ SP+ +I + L + S Sbjct: 207 MAKRLR---NSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDLTKSEQTHYLEIIESE 263 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D + D + W +L+ E Sbjct: 264 SRRMSSLCKQLLILASLDKEDLTLRKQSFDLGKQIKDTIFMLEWEWRTKELAVEMDVPNM 323 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++ +NLF + GG + ++ + E S+ G E Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + ++ + V + + + + + S L K Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKVIDLHSGAITVDSELGKGTIFSIYLPK 437 >gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 693 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 65/230 (28%), Gaps = 23/230 (10%) Query: 8 NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 + ++ + + + H++ +P+ I +LL + ++ E + S Sbjct: 163 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 222 Query: 64 -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110 + + G +D D+ + + + + + ++ Sbjct: 223 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 282 Query: 111 LSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + +IL+NL A G + S + + +++ G F Sbjct: 283 DADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 342 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ ++ + + L + +L Sbjct: 343 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLP 392 >gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] Length = 703 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 65/230 (28%), Gaps = 23/230 (10%) Query: 8 NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 + ++ + + + H++ +P+ I +LL + ++ E + S Sbjct: 173 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 232 Query: 64 -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110 + + G +D D+ + + + + + ++ Sbjct: 233 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 292 Query: 111 LSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + +IL+NL A G + S + + +++ G F Sbjct: 293 DADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 352 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ ++ + + L + +L Sbjct: 353 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLP 402 >gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 403 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 65/240 (27%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + I H++ +P+ AI ELL E + ++ L+ Sbjct: 157 LQKAKQAAEEANSVKSQFMANISHELRTPMNAIIGYSELLKEEAEDLQITGLVDDIDNIE 216 Query: 61 IIRLKFMRLAF------------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + + + ++ ++++ + + Sbjct: 217 KAGRHLLDIINDVLDFSKIETGKMTLSLENFEILILINDIKMIVQPLVKNQLNHLEIDCA 276 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLAR 159 G + +ILLNL A G I ++S+ F + G Sbjct: 277 DNIGAMYADLSKVRRILLNLLSNASKFTENGTIKLIVSKESEENTQWIKFKVNDTGIGIT 336 Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ DG+ + + + E + L Sbjct: 337 DEQQQQIFHTFTQADGSSTRKYGGIGMGLTVTKRFVDIMQGTIHVESQLGQGSTFTVRLP 396 >gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 443 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 72/230 (31%), Gaps = 23/230 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAI 61 L + L + + + H++ +P+ AI ++L D V +++ + Sbjct: 168 LEASRLKSQFLATMSHELRTPMNAIIGFAQILSRPKFGNLTGQQADMVERILNNGKHLLM 227 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEK-ID 110 + + + + G ++ L D+ +VI + + VQ+ ++ Sbjct: 228 LLNEVLDFSKLEEGRLELKPELFDLTKVINAVVMEMRSLAEAKKLSLLVQIDLQNSLLVN 287 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-----KFT 165 +IL+NL A G + +K G + + Sbjct: 288 DPVRIKQILINLLSNAIKFTDSGSIWIDVKDLPGSWVEIKVKDTGIGIAAKDFKYIFEAF 347 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + VD ++ + + L ++ E + + L + Sbjct: 348 RQVDQSITRKYPGTGLGLAIIDSLVQMMSGKIFLESQLGVGSIFTITLPR 397 >gi|329930500|ref|ZP_08284040.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328934878|gb|EGG31368.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 459 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 22/229 (9%) Query: 8 NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSA 60 L ++V L + + H++ +P+ + L+LL E + + + + Sbjct: 217 KLEQSEMVRRNLVADVAHELRTPLTIVRGKLDLLQQNRQPIEPELLLPIQDELIRLTRLV 276 Query: 61 IIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + V + E++ + A + ++++ E+ + + Sbjct: 277 GDLHQLSLAEAKQLPLVRIPTDMLVLLSQIRERLEPEAEAKNLALRLTSATERTSVPVDP 336 Query: 116 ---AKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ LNLF+ A P GG V +S + ++ G Sbjct: 337 SRITQVFLNLFVNAIRYTPHGGLVHVSLLEESPSGMLRIDIRDTGPGIEEEHLPYLFNRF 396 Query: 171 NVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + L Sbjct: 397 YRTDEARARHQGGMGLGLAIAKEFIVSHGGTIQAESKPGQGTTFTVRLP 445 >gi|304408454|ref|ZP_07390099.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304342577|gb|EFM08426.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 771 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 74/225 (32%), Gaps = 12/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58 + + S L V L + + H+I +P+ + ++L +E + + L+ Sbjct: 529 KETEERLVRSEKLSIVGQLAAGVAHEIRNPLTTLRGFVQLGASRGKLEADHLGLMLSELD 588 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK---ID 110 + + + + + + + + + R++ + + Sbjct: 589 RINLIVSDFLVLSKPQKTQFVKTDICQLMRDTLHLLGVEASMRRIRLKPTLDPNGAALVC 648 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ LNL ++P GG +T +V S + S+ G + ++ + Sbjct: 649 EPNRLKQVFLNLLKNGMEAMPGGGVLTANVFMSGDVIEISIADTGRGIPAKDLS-RLGEP 707 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + + + + ++ ++ I + L + Sbjct: 708 FFTSKDNGNGLGLMVSQQIIAQHHGSMMFHSIVGIGTRIEIRLPR 752 >gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRTDGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|228989787|ref|ZP_04149767.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM 12442] gi|228995977|ref|ZP_04155633.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17] gi|229003594|ref|ZP_04161410.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4] gi|228757636|gb|EEM06865.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4] gi|228763750|gb|EEM12641.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17] gi|228769934|gb|EEM18517.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM 12442] Length = 418 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 16/222 (7%), Positives = 63/222 (28%), Gaps = 20/222 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMR 68 + + + H++ +P+ + ++ + + + +I+ + ++ + Sbjct: 194 KERSEFLASVAHELRTPLTYVRGYADIAMKNSTPPEQRQKYLSIIKDEADYITNLVQDLF 253 Query: 69 LAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 L L + ++ + + + + + Sbjct: 254 LLAQMEKHNFSIQAKEVHLQTFLSRIVTKVNIMYEAKHIIVSSTCPSSLSIALDEQRFEQ 313 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++N+ A+ P ++TISV + K + +++ G + Sbjct: 314 VIINILNNAYVHSPEHSRITISVTEHKTQLEIAIQDTGEGIPEEDIPHIFERFYRVDKAR 373 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + L Sbjct: 374 SRSTGGTGLGLAIVKEIVELHGGEITVTSEVNQGSCFTMSLP 415 >gi|194737287|ref|YP_002117074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301231|ref|ZP_02664657.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194712789|gb|ACF92010.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287721|gb|EDY27112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616282|gb|EFY13192.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617275|gb|EFY14177.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625953|gb|EFY22768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626649|gb|EFY23451.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631484|gb|EFY28241.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635197|gb|EFY31915.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642598|gb|EFY39194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646809|gb|EFY43313.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650807|gb|EFY47200.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655893|gb|EFY52194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657292|gb|EFY53571.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665554|gb|EFY61739.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669737|gb|EFY65882.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670984|gb|EFY67116.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679192|gb|EFY75245.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679350|gb|EFY75397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688117|gb|EFY84081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195790|gb|EFZ80965.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200695|gb|EFZ85768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202184|gb|EFZ87240.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209295|gb|EFZ94230.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211620|gb|EFZ96457.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218042|gb|EGA02755.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221331|gb|EGA05753.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225742|gb|EGA09963.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230970|gb|EGA15087.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235752|gb|EGA19834.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240066|gb|EGA24112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242601|gb|EGA26623.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249691|gb|EGA33598.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252574|gb|EGA36415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256932|gb|EGA40644.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262045|gb|EGA45609.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323263949|gb|EGA47463.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268438|gb|EGA51908.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 465 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ +DS + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKDSGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EDL933] gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. Sakai] gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EC4024] gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK2000] gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK966] gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. EC1212] gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. G5101] gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. USDA 5905] gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. LSU-61] gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1125] gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1044] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 885 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 73/233 (31%), Gaps = 27/233 (11%) Query: 9 LSSMDLVALL----CSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM 58 +++ +L + + H++ +P+ +I ++LL + + + +++ + Sbjct: 637 ITASELADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLTEQQRQFLSVVKNNIE 696 Query: 59 SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VSWTG 106 + ++ +G V +++++I+ + + Sbjct: 697 RLNAILNDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLP 756 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 I +I+ NL A+ GG++ + V + + ++K +G ++ Sbjct: 757 PMIADPERMRQIVTNLISNAYKYTRDGGRIDVVVSNGGDSVTLAVKDSGVGIAADDQKHI 816 Query: 167 IVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + ++ + + + L Sbjct: 817 FTRFFRSENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLP 869 >gi|82751086|ref|YP_416827.1| respiratory response protein B [Staphylococcus aureus RF122] gi|82656617|emb|CAI81041.1| staphylococcal respiratory response protein B [Staphylococcus aureus RF122] Length = 583 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 + + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWRYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|53714664|ref|YP_100656.1| hypothetical protein BF3378 [Bacteroides fragilis YCH46] gi|52217529|dbj|BAD50122.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 626 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ + +E + IR+ + + Sbjct: 384 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDVEEKEEYIRIVTSNN 443 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L+ + ++ + + L + + VQ+ +T ++ Sbjct: 444 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 503 Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++++NL A G K+E F +K G + Sbjct: 504 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 563 Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + L Sbjct: 564 KVFERFVKLNTFVKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 614 >gi|87303395|ref|ZP_01086183.1| adaptive-response sensory kinase [Synechococcus sp. WH 5701] gi|87282043|gb|EAQ74005.1| adaptive-response sensory kinase [Synechococcus sp. WH 5701] Length = 397 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + + + + L + H++ +P+ A +L+ L + +L Sbjct: 154 LRQENETLIERLRVQERLLRMVAHELRTPLTAAKLALQSLQLGHINNTRCRDVLDRRLDD 213 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + +S + + ++E++ + + Sbjct: 214 IEHLSKDLLEVGTTRWEALFNPQRLDLAPVAAEAILELEKLWVGRTLRLITDIPADLPDV 273 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A P G+VT+S+ + S+ G E+ Sbjct: 274 FADQRRMRQVLLNLLENALKYTPDSGEVTLSLLHRTSQWVQVSVCDTGPGIPRGEQERIF 333 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ T + + + R+ + Sbjct: 334 LERVRLPQTSGTTSGFGVGLSVCRRIVEVHGGRIWVVSEPGEGACFHFTVP 384 >gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227] Length = 880 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 383 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 442 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 443 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 502 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 503 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 561 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 562 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 620 >gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671] Length = 880 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 383 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 442 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 443 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 502 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 503 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 561 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 562 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 620 >gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 975 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 54/242 (22%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L A + + H+I +P+ +I +LL + ++ E + + Sbjct: 383 RKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPLDQEQQKHL 442 Query: 54 RLSSMSAIIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + +A L+ + V I + + + + Sbjct: 443 VTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFSLKPVIDSIISTFWLEAKKKDLELK 502 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 ++ S + ++L NL A G F ++ G Sbjct: 503 LHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEEGSVTVTVGMTQNQHLFFEVQDTGIG 562 Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + L + Sbjct: 563 IAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSELGKGTCFYFS 622 Query: 213 LE 214 L Sbjct: 623 LP 624 >gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509] Length = 708 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 211 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 270 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 271 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 330 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 331 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 389 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 390 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 448 >gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863] gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC 74-1112] Length = 787 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 290 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 349 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 350 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 409 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 410 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 468 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 469 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 527 >gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli H736] Length = 708 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 211 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 270 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 271 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 330 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 331 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 389 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 390 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 448 >gi|292493504|ref|YP_003528943.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291582099|gb|ADE16556.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 696 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 16/234 (6%), Positives = 65/234 (27%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQ----- 51 + + +++ + L + L + + H++ P+ AI + L+LL + E + Sbjct: 457 LQQAELAHIARLGLASELTAGLAHELNQPLTAITTNAHTCLQLLHSGMVNMEKFEEILEE 516 Query: 52 ---LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 + +R +V+ + ++ ++ + ++++ Sbjct: 517 VTRQSERAGEIVHHLRALVRKTEYRKTAVNLNDLVHEVARLANIEARQQGVQLRLELFAS 576 Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIF-----SLKINGNLAR 159 + + ++ + + ++ + + ++ G Sbjct: 577 LPPVWGDNIQLQQVILNLVCNSIEAMGETSDGKRELTIQTSPVDCGAVEVTVSDTGPGL- 635 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE Q+ + + + + + + Sbjct: 636 SPEAMKQLFQPFFTTKPTGMGLGLSLSKSIVEAHGGEIWATPNPSRGATFHFTI 689 >gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 5 str. 8401] gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|302344035|ref|YP_003808564.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] gi|301640648|gb|ADK85970.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] Length = 838 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 + + M+ + L S I HD + +GAI EL L + + ++ + ++ Sbjct: 452 LLERKLRQAQKMEAIGTLASGITHDFNNILGAIIGYAELCLWDLSDDSPLRQNLEQVLVA 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109 A ++ + + LG + + + V + Sbjct: 512 GDRAKDLVQQILTFSRQAEQEKKALNLGPVIKESLKLMRATLPTTVELRQDISAEPCLVM 571 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT----------------ISVQDSKNENIFSLKI 153 + ++++NL A ++ + + S+ Sbjct: 572 ADPVQMQQVVMNLCTNAAHAIGDRPGMIQVTLKQLDVDRDRAASHPDLAAGRYLRLSVGD 631 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG PE +I D + + V + + + S Sbjct: 632 NGRGI-APEHIEKIFDPYFTTKKPGQGTGLGLSTVHGIVKTHGGVINVYSEPGQGATFSI 690 Query: 212 LLE 214 L Sbjct: 691 WLP 693 >gi|156740961|ref|YP_001431090.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232289|gb|ABU57072.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 471 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58 M+ ++ + + + + + HD+ +P+ + E L + I Q++ Sbjct: 217 MSADLGRAIQARR---QMTADLAHDLRTPLSIMRGYTEGLRDGRINGSPRIYQIMHGEVE 273 Query: 59 SAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-- 107 + +RL + + + ++V + Sbjct: 274 HLQRLIDDLRLLSLADAGALSLNRRAVDPRALLERAALAHMVQVESRGPTIRVEASDSLP 333 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + A++L NL A G V + + I ++ G+ + Sbjct: 334 AVWVDTDRMAQVLNNLLANALRHTQEGEIVLAAREAENRRIIIDVRDTGSGIAPEDLPHI 393 Query: 164 FTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + T +S + + + + + L Sbjct: 394 FERFYRADPARTRESGQSAGLGLAIAKAIVEAHGGSISVTSTVGIGTTFTITLP 447 >gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 630 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 234 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKGLSVI 293 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M + LG E V E V + Sbjct: 294 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHV 353 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++ NL A P G++ ++V+ I S++ +G+ Sbjct: 354 PPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIASE 413 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + D + V L + ++ + L Sbjct: 414 FLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 472 >gi|297565508|ref|YP_003684480.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849957|gb|ADH62972.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 425 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSM-DLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A+N S+ L + + I H++ +P+ + LE + + E+ ++ RL Sbjct: 183 LARNFNRMAESLEKLETERKAMIADIAHELRTPLTIMQGRLEAIQDGVASLEMREIDRLH 242 Query: 57 SM-----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + RL + + ++Q+ Sbjct: 243 HQTRLLSRLVEDLRTLSLADAGRLTLERRPLDLCAVVQHTVAGFQGQAQDKGIKLQLRLP 302 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ + ++ + A A P GG +T+ V+ E + G Sbjct: 303 SPPLEVEADPDRLTQIISNLLHNAVAHTPAGGTITVEVEARGKEVAVRVSDTGPGIPEEA 362 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + LL K Sbjct: 363 LPRVFDRFFRAEASRSRQSGGSGLGLAIVKALVELHGGMVEAKNRSSGGAEFRFLLPK 420 >gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli E24377A] gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E24377A] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNSDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|153004708|ref|YP_001379033.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028281|gb|ABS26049.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 501 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 17/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + A+ + + + H+I +P+ + +LELL E + + + Sbjct: 265 RERMVRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDLSANPQHAEVVGEMRHQVQ 324 Query: 63 --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 L F R S D L + +I V ++ Sbjct: 325 RLTHTMESLLSFARPPKAKLRSTDVNATLEKVLFLIRQQRNGGVSEVVPELMPELPSVLA 384 Query: 111 LSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ LN+ + A ++ GK+T+ + + + G + Q+ Sbjct: 385 DPSQLEQVFLNICLNACQAMGAQGGGKLTVRSRPGDGNVVVEIADTGPGI-PADLRAQVF 443 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ + + V + L+ Sbjct: 444 KPFFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTVFTVTLQ 489 >gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|85859323|ref|YP_461525.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85722414|gb|ABC77357.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 576 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 65/215 (30%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLA------ 70 + + + H+I +P+ AI S+ +L ++ ++ +L+++ FM+ Sbjct: 345 MAAGLAHEIRNPLAAISGSIHMLKKDLKLDPTDERLMKIILRGKDQLENFMKDFLLLAKP 404 Query: 71 -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L + + + + RE ++ NL + Sbjct: 405 AAGEKEWMNLNALIDEILESLVYIPDWSENITVEKNYPEPSLLYANKREMQHVIWNLILN 464 Query: 126 AHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 A ++P + V + + ++ +G E +I + + Sbjct: 465 ALQAMPRGGRLHIRTTPVVVMNERQCVQLDIEDSGEGI-SREDMNRIFEPFFTTKERGTG 523 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + L L K Sbjct: 524 LGLAVVGKIIENYSGTITITSEKEKGTRLRVCLPK 558 >gi|16125012|ref|NP_419576.1| sensory box histidine kinase FixL [Caulobacter crescentus CB15] gi|221233733|ref|YP_002516169.1| oxygen sensory histidine kinase FixL [Caulobacter crescentus NA1000] gi|13421994|gb|AAK22744.1| sensory box histidine kinase FixL [Caulobacter crescentus CB15] gi|220962905|gb|ACL94261.1| oxygen sensory histidine kinase FixL [Caulobacter crescentus NA1000] Length = 504 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 76/238 (31%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDE--VGIEDEVMQL 52 + + + L A+ + S + H++ P+ AI N L L+D + +V Sbjct: 254 LQELQNELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMDRGREADQAKVRDA 313 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSW 104 I ++ A+ + + + S + + ++IE+ V++ Sbjct: 314 IDRAAAQALRAGEVIHRMRDFARRGASEREVESLSKLIEEASALALIGEKERQVDVRLKL 373 Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGN 156 + D+ +R ++LLNL ++ + + + S+ G Sbjct: 374 DPKADDVFADRVQIQQVLLNLIRNGIDAMQAQEPRKRALLIRTGLTEEGWSEVSVADTGP 433 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + + + + R+ E + L Sbjct: 434 GI-APEVLERLFQPFMTTKPQGMGVGLSISRSIIEAHGGRIWAEANPGGGALFRFTLP 490 >gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70] gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ + Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTVM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|313902102|ref|ZP_07835513.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467620|gb|EFR63123.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 466 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 74/237 (31%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 +A L S++ L + H++ +P+ AI +L+LL + ++ Sbjct: 229 LASTFNQMLDSIETAYRLQQRFVADASHELRAPLTAILGNLDLLRRRPGLPPEEQARALE 288 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVS 103 R + + + V +I D++ V+ + +R+ Sbjct: 289 EARSEAERLSRLVADLLSLARADAGVPLVIKPFDVDAVVLEAFQEARRLARGQELVLDPL 348 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 ++LL L A P GG++T+ ++ + + I ++ G Sbjct: 349 EPVHVPGDRDRIKQLLLILLDNAIKYTPAGGRITLGLRGAGDGGAILTVADTGVGIPPAD 408 Query: 161 -PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + +++ + + ++ L Sbjct: 409 LPHVFERFYRADPARSRDPGGTGLGLPIARWIVEQHQGHITIDSAPGRGTTVTVRLP 465 >gi|267996474|gb|ACY91359.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 493 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 268 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 327 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 328 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 387 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 388 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 446 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 447 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 486 >gi|167039803|ref|YP_001662788.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|307724872|ref|YP_003904623.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|166854043|gb|ABY92452.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|307581933|gb|ADN55332.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] Length = 451 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64 L + S I H++ +P+ + + +E + + E +L L+ + Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 291 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++L + + + + + + + A++ + Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 411 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + + + Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFTVKIP 450 >gi|95929257|ref|ZP_01312001.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134755|gb|EAT16410.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 709 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 80/218 (36%), Gaps = 14/218 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAII 62 S L A+ + + I H+I +P+ I + ++L + ++ ++I L Sbjct: 481 HSKRLAAIGEMGASIAHEIRNPLAGIGGAAQMLLKSVKDNPRQVAILNEIIILVFRIENT 540 Query: 63 RLKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + A +T + L + + +E+F + + + Sbjct: 541 VNQMLDYARAWTPNQALITPMQLLKEVATEAETMENFKQISFKFSGDDSIAIPLDEDLIR 600 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++L NLF + ++P GG+++ VQ ++NE I S++ +G E ++ + I Sbjct: 601 QVLWNLFKNSAEAMPDGGELSCHVQATQNELIVSIQDHGMGM-DDETIKKLFTPFFTTKI 659 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +K + +S Sbjct: 660 YGTGLGLPICQRIIEAHKGSIAIHSALGEGTTISLRFP 697 >gi|20808828|ref|NP_623999.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20517479|gb|AAM25603.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 451 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64 L + S I H++ +P+ + + +E + + E +L L+ + Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 291 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++L + + + + + + + A++ + Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 411 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + + + Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFTVKIP 450 >gi|323494578|ref|ZP_08099682.1| osmolarity sensor protein [Vibrio brasiliensis LMG 20546] gi|323311181|gb|EGA64341.1| osmolarity sensor protein [Vibrio brasiliensis LMG 20546] Length = 435 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 68/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEDDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 279 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFM 124 +++ + L + + E V ++ + + + + NL + Sbjct: 280 YLKPVNKQSFVAVDLNEIANDVASSEGGYEVQIETEMDPSIKDTLGSPIAIKRAVSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ ++ NG + F G+ + + Sbjct: 340 NAIRYGNGWIKVSTGATADNKLVWVCIEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + Sbjct: 400 GLAIVKRIVSQHNGSVIVNNRSGGGLKVQLSFP 432 >gi|302341755|ref|YP_003806284.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638368|gb|ADK83690.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 521 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 19/233 (8%), Positives = 67/233 (28%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 + + S + A+ L + + H++ +P+ I + +L E + + + Sbjct: 273 LQHREAVLIQSHKMRAVGTLTAGVAHELNNPLNNITITAHVLQEDYDSLDDAERREMIGD 332 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGE 107 + L F R + +D L + + + I ++++ + Sbjct: 333 VVAEANRARKIISNLLDFARESSSRIEPLDLPSLLRETIYLASNQIKLSGIKIELQASDN 392 Query: 108 KIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ +V ++ D + + G Sbjct: 393 LPRVHGDSQQLRQVFLNLILNAIDASAKGGKIQVMLAPADEPHYVAVKVIDFGAGIPEHI 452 Query: 163 KFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R++ + +L Sbjct: 453 LPSVFDPFFTTKARYKGTGLGLSVSQGIVAKHGGRIMVYSQPGKGATFTVILP 505 >gi|239834826|ref|ZP_04683154.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822889|gb|EEQ94458.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 1158 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDE 48 L+ L A L + I H++ P+ AI + L+ E + Sbjct: 915 RAQEELRLTLEKLARASQASSLAELSASIAHEVNQPLAAIVANSHACQRWLMAEPPNTER 974 Query: 49 VMQLIRLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 ++ + + K +A D + + D+ + Sbjct: 975 ALKTVERITRDATSAAEIVGRIRALFKQSFVAKKKIMLSDIISEVRDLMAEELTRWRIRT 1034 Query: 99 RVQV-SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKING 155 V + + +++LNL A ++ TI V ++ + G Sbjct: 1035 VVDAADGLPFVMADKVQIQQVILNLIRNAVEAMETVSDRLLTIEVVRDEDVVRTKISDRG 1094 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + + + RL E + L L Sbjct: 1095 VGISPTE---RMFEPFITTKEQGMGMGLAISRSIVEAHGGRLWAEKNEPQGTSLVFTLP 1150 >gi|71906719|ref|YP_284306.1| osmosensitive K+ channel signal transduction histidine kinase [Dechloromonas aromatica RCB] gi|71846340|gb|AAZ45836.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Osmosensitive K+ channel His kinase sensor [Dechloromonas aromatica RCB] Length = 902 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 18/232 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMS 59 A+N + S L + S I HD+ +P+ + + L + ++ Sbjct: 653 AQNTTVQMESERLRNSVLSAISHDLRTPMSVLVGLADSMFLTQPPPTGPQAEIAHSLKEE 712 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKI 109 A+ + + L Q +E+ + + ++ VS Sbjct: 713 ALRVSSQVNNLLDMAKLQSGRVELNRQWQPLEEVVVSALKTLERAFAEHQISVSLDENLP 772 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++ + +++ NL P G V I ++ ++ NG + Sbjct: 773 LVNIDSVLMERVIYNLLENTVKYTPPGSLVEIGANVTERMIEVWVEDNGPGLPEGKEEII 832 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G ES + + + + L + Sbjct: 833 FKKFERGQPESATRGVGLGLAICRAIVEAHGGEIYAVNRPQGGARFMFTLPR 884 >gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 598 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 59/235 (25%), Gaps = 22/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 +++ L + + H++ +PI + E + + + + Sbjct: 357 RDVTEERRHDKLRKDFIANVSHELRTPISMLQGYSEAMVDGVTSSDEERKEVAQIIYDES 416 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---QVIEDFIAVDKRVQVSWTGEKI- 109 L R+ GY + L A + V V Sbjct: 417 LRMGRLVNELLDLARMEAGYIDLNLEEVDLDSYLERITRKFASFAREYDVTVELAKPGRG 476 Query: 110 ----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++L NL A GG +T+ + + + F++ G + Sbjct: 477 QIAVFDPDRIEQVLTNLIHNAIRHTNPGGLITVVHEQEEERDTFAVVDTGRGIPEEDLPY 536 Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + ++ ++ L K Sbjct: 537 VFERFYKADKARTRQHGGTGLGLAIAKHIIDAHQGKITVHSRLGEGTTFHFTLPK 591 >gi|16762284|ref|NP_457901.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143772|ref|NP_807114.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213580344|ref|ZP_03362170.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855079|ref|ZP_03383319.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20140997|sp|Q8Z332|ZRAS_SALTI RecName: Full=Sensor protein zraS gi|25512555|pir||AE0931 two-component system sensor protein STY3712 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504588|emb|CAD09471.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139407|gb|AAO70974.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 465 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1819 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 64/240 (26%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A L + L + + + H+I +P+ A+ E+L + + +E R+ S Sbjct: 1138 LALARDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPLNEEQADFARIIRDSG 1197 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + V + + + + Sbjct: 1198 KSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDV 1257 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE 162 + ++L+NL +G + +NE I ++++ E Sbjct: 1258 PNIVVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVEVHDTGIGLSE 1317 Query: 163 -KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALL 213 ++ + + L + E ++ + L Sbjct: 1318 TARKRLFTPFTQADGSMTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQGSTFWFTVTL 1377 >gi|301058125|ref|ZP_07199177.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300447757|gb|EFK11470.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 489 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 84/235 (35%), Gaps = 22/235 (9%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57 + + L + L AL + + + H+I +P+G I ++ EL+ + +L L Sbjct: 255 QRELETQLDQAERLAALGQMVAGVSHEIRNPLGIIRSTAELMGSMSSGNESQAKLSGLIV 314 Query: 58 MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + D L Q ++ + K + + Sbjct: 315 EESSRLNNIVTEFLDFARPQTPNFQDCDLNEILHKNIQFLQRELETRKILLQDGLPHRSL 374 Query: 111 LSRERAKI----LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ LN+FM A ++ GG ++ISV + ++ + +++ +G+ + + Sbjct: 375 PLKADPQLLYRSFLNIFMNALQAMEDGGTLSISVSEDEDYYVVAVQDDGSGIEEQDLK-K 433 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII------DDHNVVLSALLEK 215 I D + + V + +K + E ++ + L K Sbjct: 434 IFDPFFSTKDKGSGLGLSIVRNIIEGHKGHIWIESHLEASAPEETGTSVFIQLPK 488 >gi|283853104|ref|ZP_06370359.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283571502|gb|EFC19507.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 404 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 30/234 (12%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50 + + +L + + H++ +P+ AI E L ++ Sbjct: 165 QAEKMATIGMLATGVAHEVNNPLTAIFGFAEGLRRRLPALREKVDPGVMEDVEDYVSTIL 224 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTG 106 R L F R V + D +++ + + V+V Sbjct: 225 LECRRCQDIVTTLLTFSRHKTVSFSPVSLNAVVEDTLKLLRSHLKQRNQAKITVRVDLCE 284 Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +I + + ++ G V + Q S++ +G E Sbjct: 285 SLPKVLGDEHQIKQVMLNLLVNAMDAIAGPGRIVITTFQSVPESVCLSVEDSGYGI-RAE 343 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + I + + ++ + + V + Sbjct: 344 HMDKLFEPFFTTKRAGKGIGIGLSTCMSIVQKHHGDITVKSQPGQGAVFTVKFP 397 >gi|269838055|ref|YP_003320283.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787318|gb|ACZ39461.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 383 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 64/229 (27%), Gaps = 20/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 N + L + + + H++ P+ I + L + ++ I + Sbjct: 147 NRRLTDAQQQLQVFIAA-VTHELRQPLTTIVGYAQGLQRRIEPDLAEQDRRALEAIIEAV 205 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK 108 + VD + + ++ + + + Sbjct: 206 WRTRRITTDLHDAARLGVGEFKLQPAPVDLVAVVREVVEAQLVSGGQHRLHLDAPEQLTG 265 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 A+++ NL A P GG+V S+++ I ++ G ++ T++ Sbjct: 266 CWDRERIAQVVANLIDNAVKYSPDGGEVRASLREEAGSAILTISDQGPGL-SDDQQTRLF 324 Query: 169 DGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + + + L Sbjct: 325 QPFSRVGETTLVGSGLGLFIAKGIVESHGGRIWVDSEPNRGSTFTVRLP 373 >gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|242281024|ref|YP_002993153.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123918|gb|ACS81614.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 481 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 15/220 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 S + + L + I H+I +P+ A+ + L+ + I+ + I++ A + Sbjct: 259 QSERMATVGELSAYIAHEIRNPLMAMGGFAKVLIKDESIDAPGREKIQIILEEAQRLDRL 318 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKI 118 ++ + S D D+ +V D + + V++ ++ Sbjct: 319 LKSILSFVRSRDVEKNNIDVNRVAADAMQLLSLGCQLQEIEVEMDLDPFHPLGVGGAEQV 378 Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 L + ++P GG++ IS S ++ +G + + + D S Sbjct: 379 RQCLINLVKNSMEAMPEGGRLKISSGISGKHVWLEVRDSGPGI-SDDIRSHVFDPFYSSK 437 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + V + E + ++ LL K Sbjct: 438 VNGNGLGLPMVKKIMEEFGGGVELASRPGKGTSVALLLRK 477 >gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM 17393] gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM 17393] Length = 712 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 53/227 (23%), Gaps = 15/227 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE----------VM 50 + + S L + + + H+I +P+ AI LL E ++ Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAEADDDERESYMSLVEENNE 395 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L+ L S I VD ++ + V Sbjct: 396 LLLNLISDILDISKIEAGTVELTITRVDLPRLCREVISTCSHKKHEEAVVLCFDESSPQI 455 Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L N A +G ++ + F + G ++ Sbjct: 456 MVDADKNRIMQVLSNFVTNALKFTTKGSVTLSYRLENDTQVRFCVTDTGKGIPAEQQHEI 515 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L + E + Sbjct: 516 FNRFVKLDSFSQGAGLGLSICQSLVERMGGEIGVESREGEGSCFWFT 562 >gi|152966751|ref|YP_001362535.1| integral membrane sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] gi|151361268|gb|ABS04271.1| integral membrane sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] Length = 501 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 60/203 (29%), Gaps = 12/203 (5%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYT 74 H++ +P+ + LELLD + + L+ + + R F Sbjct: 275 HELRTPLTIVQGHLELLDVDDPRDVTDTRDLVLDELSRMTRLVDDLTLLAKARRPDFVTL 334 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 +V++ L D+ + RV+ + + +L L A G Sbjct: 335 QAVEAGRLLDDVYDKVVPLGERQWRVEERAEVTVQADGQRLTQAVLQLVSNAVKFTRPGD 394 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAH 191 + + E ++ +G + F + ++ + V +A Sbjct: 395 LIALGSAVRGGELHLRVRDSGPGIAAGDLDRIFERFGRAETGRGVEGSGLGLSIVTAIAE 454 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + R+ + +L Sbjct: 455 AHGGRVDVSSAPGLGSSFAVVLP 477 >gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 999 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 63/226 (27%), Gaps = 25/226 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + S + H++ +P+ +I +L L+ + ++++ ++ + Sbjct: 504 KMKSEFISTVSHELRTPLTSISGALGLIIGSRFEELPDKTQKLLKTAHRNNQRLSHLIND 563 Query: 67 MRLAF-------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRE 114 + + + L L + + V + + S+ Sbjct: 564 LLDIEKIAAGKLHFDMRLHELTLLVEQAIETNQHYGSSRDVSIRLICDANTVLVHVDSQR 623 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171 ++L NL A G+V + V + I S+ G + +I Sbjct: 624 LLQVLANLLSNAIKFSSDHGQVIVEVTTDNGKAIVSVIDQGPGINQAFR-ERIFQRFAQA 682 Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ E +L Sbjct: 683 DSSDTRAKEGTGLGLAISRELIERMGGQIDFESTMGKGSRFFFVLP 728 >gi|229079164|ref|ZP_04211713.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2] gi|228704181|gb|EEL56618.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2] Length = 351 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346 >gi|228952361|ref|ZP_04114449.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043750|ref|ZP_04191452.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676] gi|229109449|ref|ZP_04239043.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15] gi|228674016|gb|EEL29266.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15] gi|228725603|gb|EEL76858.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676] gi|228807357|gb|EEM53888.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 351 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346 >gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with RcsB, regulates colanic capsule biosynthesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 948 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|229135508|ref|ZP_04264294.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196] gi|228647973|gb|EEL04022.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196] Length = 484 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 66/242 (27%), Gaps = 27/242 (11%) Query: 1 MAK----NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 M K +I + L S I HD+ +PI +I +E + + D+ + Sbjct: 237 MRKKLKGSIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLT 296 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------- 104 I + + + L + V + + ++ +S Sbjct: 297 TIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEGGIEVYL 356 Query: 105 -----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLA 158 + +++ NL + + + K S N I + NG+ Sbjct: 357 QLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEAKKITVTVLSDNNKVIVKVMDNGSGI 416 Query: 159 RF---PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P F + + + E+ + E + L Sbjct: 417 EADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476 Query: 214 EK 215 +K Sbjct: 477 KK 478 >gi|229139294|ref|ZP_04267866.1| hypothetical protein bcere0013_24040 [Bacillus cereus BDRD-ST26] gi|229196828|ref|ZP_04323569.1| hypothetical protein bcere0001_23830 [Bacillus cereus m1293] gi|228586551|gb|EEK44628.1| hypothetical protein bcere0001_23830 [Bacillus cereus m1293] gi|228644150|gb|EEL00410.1| hypothetical protein bcere0013_24040 [Bacillus cereus BDRD-ST26] Length = 413 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 243 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 303 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGNLKIRSVMNKGTTLTITFPK 404 >gi|224368654|ref|YP_002602816.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223691370|gb|ACN14653.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 405 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 32/235 (13%) Query: 11 SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV------------------GIEDEVM 50 S + LL + + H+I +P+ +I E L +E + Sbjct: 164 SKKMATVGLLAAGVAHEINNPLTSISGFSEGLKRRLPRLKSCLENNPENFELMADFNEYI 223 Query: 51 QLIRLSSMSAIIRLKFMRLAFGY----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + I +K + VD + D+ ++ + +++ Sbjct: 224 ETIIAECNRCHDIVKSLLTFSPRKKIVFIPVDLKNLINDVLTLLRYRLKNFPLLRIDLEF 283 Query: 107 EKIDLSRERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + +++LN+ A ++ G++ I + + S+K NG+ P Sbjct: 284 NTDIPKVQGNAAELKQVMLNIICNALDAIDPDGRIQIYAKKANQWVTLSVKDNGSGI-TP 342 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + + +++ ++ ++ V Sbjct: 343 ETMDRMFDPFFTTKPVDKGTGVGLSTCYNIIKQHRGEIVVNSKENIGSVFKIKFP 397 >gi|206974118|ref|ZP_03235036.1| sporulation kinase B [Bacillus cereus H3081.97] gi|217960104|ref|YP_002338662.1| sporulation kinase B [Bacillus cereus AH187] gi|206748274|gb|EDZ59663.1| sporulation kinase B [Bacillus cereus H3081.97] gi|217063913|gb|ACJ78163.1| sporulation kinase B [Bacillus cereus AH187] Length = 422 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGNLKIRSVMNKGTTLTITFPK 413 >gi|121728449|ref|ZP_01681475.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|121629273|gb|EAX61708.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] Length = 406 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + K + + L L + + H++ +P+ A+ +++L +V Sbjct: 21 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 80 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 81 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 140 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A +G + F +K Sbjct: 141 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 199 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + E Sbjct: 200 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 258 Query: 209 LSALLE 214 + + Sbjct: 259 FTLYIP 264 >gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|329962237|ref|ZP_08300243.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328530345|gb|EGF57222.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1326 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 59/215 (27%), Gaps = 19/215 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + I H+ +P+ I + +E L + G ++ + + + ++ Sbjct: 805 ANISHEFRTPLTLIISQIEALLQSGNHSPFLRTRLQKIYKNTFQFRELISELLDFRKMER 864 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRERAKILLNLF 123 + Q+ + + R+ K+ NL Sbjct: 865 GKLQLHVCQLDIVAYLKQIHLDFTDQAQLQNIHFDFQTDAESLMCWYDGRQLRKVFSNLL 924 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHD 180 A P GKV + + + + + G P F + + + Sbjct: 925 SNAFKHTPEKGKVELQIHEKETTVEIKVIDTGEGIPQEALPYIFDRFYQVDTAVSSPGSG 984 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + ++ + + + + L K Sbjct: 985 IGLALSKGVVELHHGKISVQSALQYGTIFTVTLPK 1019 >gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 862 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 62/250 (24%), Gaps = 37/250 (14%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 M K L A + + + H+I +P+ AI E+L+ + + Sbjct: 354 MRKRSERELRRAKNEAESANRTKTIFLANMSHEIRTPMNAILGFTEILEAEERDPRRRKY 413 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--- 109 I + S L + + I L I + + + +K Sbjct: 414 IEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEKKHLIL 473 Query: 110 -------------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------ENIFS 150 +IL+NL A GG + ++ + Sbjct: 474 DVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSVDLRID 533 Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + +G + +I + + L+ + Sbjct: 534 VADSGPGIAVSD-QERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLTSSPG 592 Query: 205 HNVVLSALLE 214 + S L Sbjct: 593 EGAIFSIELP 602 >gi|296118917|ref|ZP_06837490.1| sensor histidine kinase [Corynebacterium ammoniagenes DSM 20306] gi|295968015|gb|EFG81267.1| sensor histidine kinase [Corynebacterium ammoniagenes DSM 20306] Length = 507 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 56/208 (26%), Gaps = 16/208 (7%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 H++ +P+ ++ EL +D M ++ SS + + + L +D Sbjct: 237 SHELRTPLTSLRGYTELYRSGITDDVDMVLSKIDAESSRMSYLVEDLLALTRAEGTRLDI 296 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDLSRERAKILLNLFMVAHASLP 131 + A + + +I+LNL Sbjct: 297 RPVDVLELSLSVASSARAAFTDRTINVSNDTLGVPVVYGDASRLHQIILNLITNGIRHGG 356 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN--VESTIDSHDIQFYYV 186 ++TI ++ ++ + + G F + + + V Sbjct: 357 DEAEITIGLERDGDDVLIKVIDTGRGMDPEVSAHIFERFYREDTSRTRDTGGSGLGLAIV 416 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 L ++ + E + L Sbjct: 417 KSLVEQHGGSIDVESELGVGSTFTVRLP 444 >gi|228958874|ref|ZP_04120580.1| hypothetical protein bthur0005_23720 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800811|gb|EEM47722.1| hypothetical protein bthur0005_23720 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 360 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 11/225 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52 + ++ + M++V+ L + I H++ +P+ + +LL +++ Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110 + + L F + A + L + +I ++ + Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LNL + ++P GG + IS + ++ ++ +G E+ + + Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L I L K Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLMITFPK 354 >gi|229145708|ref|ZP_04274089.1| hypothetical protein bcere0012_28590 [Bacillus cereus BDRD-ST24] gi|228637689|gb|EEK94138.1| hypothetical protein bcere0012_28590 [Bacillus cereus BDRD-ST24] Length = 801 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + +I Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIISSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + I + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNMSVLMDQVLMLLQPQAIMNNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + + + L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795 >gi|207859351|ref|YP_002246002.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206711154|emb|CAR35528.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 465 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPNRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 662 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----L 52 + ++ ++ L + + H++ +P+ I ELL + + + Sbjct: 260 LQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLGVI 319 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------- 101 + + + L+ G V + + D+ V+ + I + V Sbjct: 320 ANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLCGVLGEAIGAQELVAEGKALDVHLQL 379 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++ NL A P G++ +++Q N + +++ G+ Sbjct: 380 PDRPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVALQADGNHWVITVRDTGDGIAPE 439 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + + H + L Sbjct: 440 FLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 498 >gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 301] gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 301] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 929 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 61/236 (25%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK ++ + SR+ H++ +P+ AI +LL+ + Sbjct: 552 AKEEADRANNAK--SEFLSRMSHELRTPMNAIMGFAQLLETDRETPITLDQADNVREIRH 609 Query: 62 IRLKFMRLAFGYTGSVDSLI-----------------GLGDIEQVIEDFIAVDKRVQVSW 104 + L + Q + ++ ++ + Sbjct: 610 AGQHLLELINEVLDLARIETGRIELSLEPVEVPLLIGECMALLQPLTLGRRIELKLDIDG 669 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163 TG +ILLNL A G V I+ Q ++ +G + Sbjct: 670 TGTVQADRLRLRQILLNLLSNAIKYNRDRGNVHITCQPVAAGRIRIAVCDSGRGIAV-DA 728 Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ I+ I L + E + L Sbjct: 729 MTRLFKPFERIESAYDGIEGTGIGLALSKRLVEAMGGTIGVESVVGAGSTFWVELP 784 >gi|301164155|emb|CBW23711.1| putative two-component system, sensor kinase [Bacteroides fragilis 638R] Length = 543 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ + +E + IR+ + + Sbjct: 301 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 360 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105 + L+ + ++ + + L + + VQ+ +T Sbjct: 361 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKESG 420 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 +++++NL A G K+E F +K G + Sbjct: 421 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 480 Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ + E + L Sbjct: 481 KVFERFVKLNTFIKGTGLGLAICRVIIERLGGTIGVETREGKGACFWFRLP 531 >gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 407 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 78/243 (32%), Gaps = 29/243 (11%) Query: 2 AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDEVG-------IEDE 48 + L ++ L + S I H++ +P+ AI ++L D Sbjct: 154 RQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDM 213 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------DK 98 + +++ + +++ + + + +G + + D+ +++ + Sbjct: 214 LKRILNNAKDLSMLLNEVLDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEAKKLSL 273 Query: 99 RVQVSWTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 V++ + +IL+NL A RG + SK+ S++ G Sbjct: 274 SVEIDLENTLVFNDPVRVRQILINLLSNAIKFTERGCVWVRVTETSKSRIAISIRDTGIG 333 Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + VD + + + L +++ E + + Sbjct: 334 ISNQDCEHIFEAFRQVDQGMSRKYPGTGLGLAIIDSLVKIMGGKIMLESQLAVGSLFTVE 393 Query: 213 LEK 215 L + Sbjct: 394 LPR 396 >gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Escherichia coli O157:H7 str. EDL933] gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str. Sakai] gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|326942456|gb|AEA18352.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 483 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + + + L + + + ++ +S G Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHS 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSLEK 478 >gi|298387314|ref|ZP_06996867.1| two-component system sensor protein [Bacteroides sp. 1_1_14] gi|298259983|gb|EFI02854.1| two-component system sensor protein [Bacteroides sp. 1_1_14] Length = 538 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +++ + G E+E + +++ S + Sbjct: 303 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMICQTGEEEEKQEYMKIVSSNN 362 Query: 61 IIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + L+ + + + L + V +++ Sbjct: 363 ELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQMQEKNTSPDVAITFTEKAEE 422 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A P+G D + F +K G + Sbjct: 423 CILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKDEIYFYVKDTGIGIPADKIN 482 Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + L Sbjct: 483 EVFERFVKLNTFAKGTGLGLAICRVIVERLGGTIGADSKEGKGSCFWFRLP 533 >gi|283138911|gb|ADB12514.1| putative two-component sensor [uncultured bacterium 9F08] Length = 912 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 42/250 (16%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------------- 50 S L +L L + + H+I +PIG I +L L+ + Sbjct: 652 EQMQQSEKLASLGMLAAGVAHEINNPIGYIRANLNTLERHMASLFQLLDRDETARPPHSS 711 Query: 51 ------------------------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI 86 + +R + + + Sbjct: 712 QSPIDPDYLRRDIGELLQETSEGVERVRNIVIDLKELSHPAGEDAWQLADLHKGLNSTLN 771 Query: 87 EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146 E + Q L + ++ LNL + A ++ + G + I E Sbjct: 772 IARSELKHKAEVVCQFGELPLVQCLPGQLNQVFLNLLVNAAQAIEQRGVIVIRTGQQGEE 831 Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD 204 + G ++ + + I + ++ R+ + + Sbjct: 832 VWIEVSDTGKGIPPQHLK-RLFEPFFTTKPVGQGTGIGLPLSHRIVEKHHGRIEVDSEEG 890 Query: 205 HNVVLSALLE 214 L Sbjct: 891 IGSRFRVWLP 900 >gi|242242764|ref|ZP_04797209.1| histidine kinase [Staphylococcus epidermidis W23144] gi|242233900|gb|EES36212.1| histidine kinase [Staphylococcus epidermidis W23144] Length = 586 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + + + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 423 Query: 74 -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122 L +E + ++L NL Sbjct: 424 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYDMDRMDQVLTNL 483 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177 A G + IS+++ + NI ++ G F + + Sbjct: 484 IDNATRYTQAGDSIKISIEEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 543 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ + R+ E L K Sbjct: 544 GTGLGLFICKMIIEAHGGRIDVESELGKGTSFIIRLPK 581 >gi|228941850|ref|ZP_04104397.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974775|ref|ZP_04135341.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785178|gb|EEM33191.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818062|gb|EEM64140.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 484 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + + + L + + + ++ +S G Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHS 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSLEK 478 >gi|228981370|ref|ZP_04141670.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407] gi|228778570|gb|EEM26837.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407] Length = 485 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I + L S I HD+ +PI +I +E + + D+ + I Sbjct: 242 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 301 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + + + L + + + ++ +S G Sbjct: 302 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHS 361 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 362 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 421 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 422 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSLEK 479 >gi|196041818|ref|ZP_03109107.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196027312|gb|EDX65930.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 463 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ + VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ ++ ISV + +++ G + Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGMPPEDLPHIFERFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454 >gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli HS] gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ATCC 8739] gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli HS] gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 1021 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 65/245 (26%), Gaps = 33/245 (13%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + H+I +P+ I +LELL+ ++ +R Sbjct: 486 LVQQLEEAVRAADSANAAKSSFLAAT-SHEIRTPLNVILGNLELLERTALDASQQSRVRT 544 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 SA L + ++ + + IE + I Sbjct: 545 LRASAEGLLAIVSDILDFSKIEAGAMSVESIEFELIAVIEQQLAAFAPIAKAKGLPLFVE 604 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155 + S A++L NL A G E S++ G Sbjct: 605 IDASVEQRMRGDPTRLAQVLGNLLSNAIKFTSEGHIAARVAVWPDARGVPEVELSVEDTG 664 Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 ++ ++ + + L L E V Sbjct: 665 IGIEPTQR-ARLFKPFSQVDASITRRYGGTGLGLALCDRLVTAMGGTLSVESTPQVGSVF 723 Query: 210 SALLE 214 S L Sbjct: 724 SVHLP 728 >gi|324326625|gb|ADY21885.1| sporulation kinase B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 422 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M++V+ L + I H++ +P+ + +LL +++ + Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112 + L F + A + L + +I ++ T + Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + + L+ K Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGNLKIRSVINKGTTLTITFPK 413 >gi|261210565|ref|ZP_05924858.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sp. RC341] gi|260840350|gb|EEX66921.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sp. RC341] Length = 597 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 68/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103 I + + + ++ + S + + + + + +V Sbjct: 418 ISVLTERMAKISEQLKSFARKSTSNEQQEVQLYPLILSAKELMTAQFKAQMTQLELCEVD 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + S + + NG Sbjct: 478 TLVWVRVNPIQLEQVLINLLTNALQALEGQAERIVQIRLHISPQQIQLYVDDNGPGIGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L +L + Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGELSVATSPLGGARFMIILPR 590 >gi|229005877|ref|ZP_04163571.1| hypothetical protein bmyco0002_28010 [Bacillus mycoides Rock1-4] gi|228755341|gb|EEM04692.1| hypothetical protein bmyco0002_28010 [Bacillus mycoides Rock1-4] Length = 513 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52 + K S L L + I H+I +P+ A+ L LL E ++ Sbjct: 275 LKKTEKLLRKSEKLAVVGQLTAGIAHEIRNPLTALKGFLTLLQPDISEQNKWYIDVMLSE 334 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + S + ++ ++ I + + ++ Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEI 394 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ A ++PRGG + I + +N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLP 500 >gi|206977533|ref|ZP_03238427.1| sporulation kinase B [Bacillus cereus H3081.97] gi|217958915|ref|YP_002337463.1| sporulation kinase B [Bacillus cereus AH187] gi|222095072|ref|YP_002529132.1| sporulation kinase b [Bacillus cereus Q1] gi|229138125|ref|ZP_04266723.1| hypothetical protein bcere0013_12490 [Bacillus cereus BDRD-ST26] gi|229195635|ref|ZP_04322401.1| hypothetical protein bcere0001_12020 [Bacillus cereus m1293] gi|206744251|gb|EDZ55664.1| sporulation kinase B [Bacillus cereus H3081.97] gi|217065461|gb|ACJ79711.1| sporulation kinase B [Bacillus cereus AH187] gi|221239130|gb|ACM11840.1| sporulation kinase b [Bacillus cereus Q1] gi|228587884|gb|EEK45936.1| hypothetical protein bcere0001_12020 [Bacillus cereus m1293] gi|228645470|gb|EEL01704.1| hypothetical protein bcere0013_12490 [Bacillus cereus BDRD-ST26] Length = 402 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSGTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 948 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|37679285|ref|NP_933894.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio vulnificus YJ016] gi|37198028|dbj|BAC93865.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio vulnificus YJ016] Length = 605 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L + + I H++ +P+ AI + + L E V + + Sbjct: 367 LRLTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSR 426 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S K + + + L E + + +++ + Sbjct: 427 ISALTERMAKISQQLRSFARKSAGDELVEARLMPVLLSANELMKPSLKSARVQLETDFPE 486 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160 I L ++ L A ++ + + + + + NG Sbjct: 487 YDIHLVINTIQLEQVLINLITNAIEAMENTEAKQLRITVDRALEQQICVHIDDNGPGI-D 545 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P KF Q+ + + + + + +L + L Sbjct: 546 PAKFAQLCEPFHTTKTNGLGLGLSISQQILAGMNGKLQVSHSPLGGARFTITLP 599 >gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 948 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302] gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042] gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489] gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sonnei Ss046] gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185] gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088] gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088] gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185] gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB and RcsD [Escherichia coli W] gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B] gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010] gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G] gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357] gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli KO11] gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120] gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167] gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 536] gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536] gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|39997578|ref|NP_953529.1| sensor histidine kinase KdpD [Geobacter sulfurreducens PCA] gi|39984470|gb|AAR35856.1| sensor histidine kinase KdpD [Geobacter sulfurreducens PCA] Length = 885 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57 A+ + +L ALL S I HD+ +P+ AI +L+ L + ++ ++L+ + Sbjct: 641 AEQAQILQARENLERALLNS-ISHDLRTPLVAITGALDTLRDKVHTLADESRLELLDTAW 699 Query: 58 MSAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105 A +F+ T + + + V+++ Sbjct: 700 EEAERLNRFVGNLLDMTRLESGAIKLKRELSDVQDLIGCALAALERRIGERGIDVRLAPD 759 Query: 106 GE-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L+NL A P V I+ + + G + Sbjct: 760 LPLVRIDMVLMTQVLVNLLDNALKYSPPDSGVEITARVDGGRLRIEMADRGPGIPEQDLK 819 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + + E + + L Sbjct: 820 RVFDKFYRIAVPEGAQGTGLGLSICKGIVEAHGGSIRAENRTGGGLRVIVTLP 872 >gi|328861215|gb|EGG10319.1| hypothetical protein MELLADRAFT_115560 [Melampsora larici-populina 98AG31] Length = 1004 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 64/247 (25%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLVALLCSRI--------CHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K + + + L A + + H++ +P+ ++ +LL + DE + Sbjct: 440 TKRRLWKVKAQKLAAEGAADLKQNFISVASHELRTPLFSVTGYADLLGRTDLNDEQKLYL 499 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + ++ + + V+ +++ + +R Sbjct: 500 ANMQQACANMQLIIANVLDFSKLERNNEESNAKPVCMNLRAMVEGIGRMTEDKGRSVRAR 559 Query: 114 ERA---------------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152 +I +NL A +G + + E + ++ Sbjct: 560 SVDLIVHVSAIVPETALVDETFVLRICMNLLSNALKFTEKGFILISLDMNEPEELVIKVQ 619 Query: 153 INGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + + D + + L ++ + I+ Sbjct: 620 DTGIGIPRSFRKDLFEPYRQADSSTTRPHQGTGLGLSICKQLVQRLDGKIEVDSIEGEGT 679 Query: 208 VLSALLE 214 L Sbjct: 680 TFVVTLP 686 >gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|319400834|gb|EFV89053.1| sensor protein srrB [Staphylococcus epidermidis FRI909] Length = 586 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + + + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 423 Query: 74 -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122 L +E + ++L NL Sbjct: 424 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYDMDRMDQVLTNL 483 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177 A G + IS+ + + NI ++ G F + + Sbjct: 484 IDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 543 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ R+ E L K Sbjct: 544 GTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPK 581 >gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1273 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++ + + + H+I +P+ + L+LL E + + + + ++ SA Sbjct: 595 LRQQKEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCETDTDQQQGRYVSIAKNSA 654 Query: 61 IIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110 L + ++ +E V + F + + + Sbjct: 655 ESLLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLELSCHILPEV 714 Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160 S +IL+NL A G +D + F ++ G Sbjct: 715 ASRVLGDSERLRQILINLIGNAIKFTEVGEIRINVAATSTRDHEQWVRFEVQDTGVGI-P 773 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + LA ++ + S + Sbjct: 774 EDIQQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGKITVDSQLGSGATFSLEIP 833 >gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70] gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|302343347|ref|YP_003807876.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639960|gb|ADK85282.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 489 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 79/229 (34%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 A+ + S L +L + + + H+I +P+G I ++ ELL L + Sbjct: 258 AQLLEQLNQSERLASLGRMIAGVAHEIRNPLGIIRSTAELLGSRADSASK-PLAGVIVEE 316 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + + ++ + + + VQ + + + + Sbjct: 317 SNRLNQIVTEFLDFARPQRPNLTPVFLDEVLGRNLLVLEPEIKRLGIVVQRDFKAQPLIV 376 Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164 + + LN+F A ++ +GG++ +S + + S+ +G PE Sbjct: 377 VGDADLLYRAFLNIFNNAVQAMEQGGELRVSTFVEAHDGVDWGVVSVDDSGPGI-DPEAR 435 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I++ + + V + + +L E + L Sbjct: 436 AKILEPFFTTKEKGTGLGLSIVNSIVASHGGKLSIESSPLGGARIKVRL 484 >gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354] gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sp. D9] gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|229097174|ref|ZP_04228136.1| hypothetical protein bcere0020_24170 [Bacillus cereus Rock3-29] gi|229116164|ref|ZP_04245555.1| hypothetical protein bcere0017_24530 [Bacillus cereus Rock1-3] gi|228667281|gb|EEL22732.1| hypothetical protein bcere0017_24530 [Bacillus cereus Rock1-3] gi|228685985|gb|EEL39901.1| hypothetical protein bcere0020_24170 [Bacillus cereus Rock3-29] Length = 433 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++ + M++V+ L + I H++ +P+ + +LL DE ++ I Sbjct: 208 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLSPESRDEYIEHILEELN 267 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSR 113 A + I + ++ + ++ I ++ Sbjct: 268 RAQEIIDDYLTFAKPAPEKLDHISIDQELNRAINMILPLCNMNTIHITKDFSKANIVGNK 327 Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + NL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 328 QHFQQCFLNLIKNSIEAMPNGGTLNISSTISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 386 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L + L+ K Sbjct: 387 STKSKGTGLGTMVAVKIIETMHGNLKIQSTVSKGTALTITFPK 429 >gi|225569869|ref|ZP_03778894.1| hypothetical protein CLOHYLEM_05963 [Clostridium hylemonae DSM 15053] gi|225161339|gb|EEG73958.1| hypothetical protein CLOHYLEM_05963 [Clostridium hylemonae DSM 15053] Length = 508 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 69/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + N + L S I HD+ +P+ AI E + + E M + + Sbjct: 262 LKDNAEEKVKYDKESKELISNISHDLKTPVTAIKGYAEGIMDGVADTPEKMDKYIRTIYN 321 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------ 113 + + +D+ + + + D +S E ++ Sbjct: 322 KANEMDLLINELTLYSKIDTNRIPYNFNTLSVNEYFNDCAEDLSLEMESKNVEFGYFNYV 381 Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161 + +++ N+ + + + V+D + ++ NG Sbjct: 382 ASGVQVIADAEQIKRVIHNIVNNSLKYMDKSKGKINLRVKDVGDFIQVEVEDNGKGIAAK 441 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + E+ ++ ++ + +L K Sbjct: 442 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREETGTTMYFVLRK 500 >gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRVEGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii Sb227] gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83] gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|153807682|ref|ZP_01960350.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185] gi|149130044|gb|EDM21256.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185] Length = 631 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 18/229 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + + L + + + H+I +P+ AI +L EV +E+ + + + + Sbjct: 400 EAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPEVDDREEMREYTDIIETNTNL 459 Query: 63 R-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107 +D + +IEQ ++ + D + Sbjct: 460 LLQLINDILDMSKIEAGTFDFCPALIDVNQTMEEIEQSMQLRLKNDAVTFTFCERLPECM 519 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L N + A G N F + G PE+ + Sbjct: 520 LYIDKNRLMQLLSNFIVNAIKFTKSGSIRMGYRMKDINTIYFYVSDTGCGM-SPEQCRHV 578 Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ K + + L Sbjct: 579 FERFVKYNPFIQGTGLGLSICHMIVEHLKGEIGVNSEEGKGSTFWFTLP 627 >gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli APEC O1] gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB and RojN [Escherichia coli APEC O1] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UTI89] gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89] gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli IHE3034] gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252] gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 2457T] gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 2457T] gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor [Shigella flexneri 2002017] gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T] gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli CFT073] gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073] gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU 83972] gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia sp. 4_1_40B] gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular synthesis regulator component C gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1] gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520] gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482] gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] Length = 1425 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 56/236 (23%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ + + + + H++ +P+ +I EL++ + + + L A Sbjct: 1176 LTQSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPLIQEQSALIRQGA 1235 Query: 61 IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 + + V + ++ ++ V + Sbjct: 1236 EHLNALLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLALTAAVSDAA 1295 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEK 163 + + +IL NL A P G ++ F + G Sbjct: 1296 PQTLVTDRLKLKQILSNLLSNAIKFTPAGRVEIFVDACPDGSQVHFHVNDTGPGIPASLH 1355 Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + LA L + L Sbjct: 1356 GVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFTLSLP 1411 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+++ S + + I H++ +P+ +I EL G + E + + +A Sbjct: 593 ARDLAEEASRSK--SEFVANISHELRTPLQSILGFSELGMLRGRQHEKLAAMFSDIHAAG 650 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------------T 105 R+ + ++S +G E++ + D ++ Sbjct: 651 QRMLVLVNDLLDIAKIESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAP 710 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPE-- 162 +++ N+ A P+G + IS + + G E Sbjct: 711 LIAKVDPSRFQQVVRNVLANAVKFSPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSELE 770 Query: 163 -KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F V + + + + R+ + + +L Sbjct: 771 AVFEAFVQSSQTRDGSGGTGLGLAICRKIITAHGGRINATNVPGGGAMFHIVLP 824 >gi|261420032|ref|YP_003253714.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|297530007|ref|YP_003671282.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|319766846|ref|YP_004132347.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261376489|gb|ACX79232.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|297253259|gb|ADI26705.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|317111712|gb|ADU94204.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 434 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 + M+ V L + I H+I +P+ A ++L++E + + + Sbjct: 192 RKRVIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELD 251 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLS 112 + I ++ A + + L +IE+VI+ + V I Sbjct: 252 RAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGER 311 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LLN+ A ++P GG + + V + + G E+ ++ + Sbjct: 312 EKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGM-TKEQLERLGEPYF 370 Query: 173 EST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + E +S L Sbjct: 371 TTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLP 413 >gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 1240 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K L S + + + H+I +P+ + LELL +G+ + + ++ + S Sbjct: 259 LEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQREYVQAACNSG 318 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + Q + + V + Sbjct: 319 ETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELGYVVLDNV 378 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160 S +IL+NL A RG + K F ++ G Sbjct: 379 PLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLVLHFEVRDTGIGIPV 438 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + L + E + Sbjct: 439 -EFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSIFWFTAP 497 >gi|145299988|ref|YP_001142829.1| two-component system sensor histidine kinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852760|gb|ABO91081.1| two-component system sensor histidine kinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 719 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + L S L AL LC+ + H I +P+ I ++EL+ E + L+ Sbjct: 440 LTQARQQLLISEKLAALGELCAGVAHVINNPLAVILGNVELMKLELGEAAAPVSEELALV 499 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 500 LAQIERIRAITRSLLQYSRPGDYETAPVWQHLTPIIEESLTLVRSALRQQQVNLVADLQA 559 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLA 158 ++ ++L+NL + A +L G++ + +D +E + NG+ Sbjct: 560 QQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWFDEAGGLQGAEVRVIDNGSGI 619 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + + LL + L Sbjct: 620 DAA-IMDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVASTLGKGSCFTIRL 673 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K L S + + + H+I +P+ + LELL +G+ + + ++ + S Sbjct: 259 LEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQREYVQAACNSG 318 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + Q + + V + Sbjct: 319 ETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELGYVVLDNV 378 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160 S +IL+NL A RG + K F ++ G Sbjct: 379 PLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLVLHFEVRDTGIGIPV 438 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + L + E + Sbjct: 439 -EFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSIFWFTAP 497 >gi|309792564|ref|ZP_07687026.1| histidine kinase [Oscillochloris trichoides DG6] gi|308225378|gb|EFO79144.1| histidine kinase [Oscillochloris trichoides DG6] Length = 792 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 66/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV--MQLIRLS 56 ++ + S L AL + I H+ + +G + +L L + ++++ + Sbjct: 423 QESQAELIQSSKLAALGTFAAGIAHEFNNLLGGMLGYAQLGLSSPDDTTKNESLKVVVDT 482 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + L D + + + ++ I Sbjct: 483 CKRGKSITGSLLTFARRGEPRREMADLSDAVRGTVTLMEIELRKHQISIVQKIEPVPLTI 542 Query: 110 DLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++++LN A ++ G +T+ + + S+ G +I+ Sbjct: 543 CDPGQISQVVLNFLTNARDAMKPAGGTLTVRLSSDEQRITLSISDTGCGI-PDAIRDKIL 601 Query: 169 DGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L E + L Sbjct: 602 EPFVTTKGALGGSTTPGTGLGLSVSYGIVQSHGGTLEVESSPGQGTTMIMHLP 654 >gi|226227421|ref|YP_002761527.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226090612|dbj|BAH39057.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 500 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 29/238 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRL 55 I + L AL L + + H+I +P+ I E + E++++I L Sbjct: 257 IDRTAQAEKLAALGQLAAGVMHEINNPLATIAACAESMSLQQELGPGAAPPTELLRIIDL 316 Query: 56 SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L F R VD + +++ + V+ E+ + Sbjct: 317 EVQRCKKIVNGLLDFSRPKTAGKERVDLNAVVQQGLFLLQHHPRFKRVKLVTELEERTPM 376 Query: 112 SRERA-----KILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLA 158 + ++L+ L M A + P + F + G Sbjct: 377 IVDADADQLVQVLIALAMNALDATPEGGRVTIRTHMLAEGTDTHPGPCAAFEVADEGPGI 436 Query: 159 RFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + ++ L + L Sbjct: 437 -PRALHAKVFEPFFTTKPPGQGTGLGLAICYGIVRDHGGALDLVSSEGVGATFRVALP 493 >gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 958 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + + H++ +P+ AI ELL +E + + S Sbjct: 324 LRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSEETNEEKRKHLVTIYRSG 383 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSW 104 L + + + + + + + + + + Sbjct: 384 EHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHLAYSLDNNV 443 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +IL NL G +TI + + + + G EK Sbjct: 444 PEYVVGDAFRIKQILTNLVSNGIKFTS-QGYITIQANYKEGKITYIVNDTGIGI-PEEKL 501 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + L +L E + L Sbjct: 502 DKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYIESHIGKGTKVVVSLP 557 >gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|228907708|ref|ZP_04071564.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL 200] gi|228851941|gb|EEM96739.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL 200] Length = 351 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 67/233 (28%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG + I +++ + ++ +G + Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTIIIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346 >gi|229144601|ref|ZP_04273003.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24] gi|228638841|gb|EEK95269.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24] Length = 351 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346 >gi|229188857|ref|ZP_04315890.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876] gi|228594562|gb|EEK52348.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876] Length = 463 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 18/233 (7%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 + + +L M + + + H++ +P+ + ++ + E Sbjct: 222 QTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIASKESTPSEQRLRYLSIIKDES 281 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEK-- 108 + ++ + L + I ++ ++VS++ Sbjct: 282 DYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAIYKERYIKVSFSCPPTL 341 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++N+ A+ + ISV + +++ G + Sbjct: 342 LVNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEEHKSISITIEDEGEGIPPEDLPHI 401 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + D+ L Sbjct: 402 FDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 454 >gi|218885320|ref|YP_002434641.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756274|gb|ACL07173.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 722 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 67/233 (28%), Gaps = 22/233 (9%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 + + +L + L A+ L + + H+I +P+ A+ + L ++ Q + Sbjct: 383 RELEKSLSEAEKLAAVGTLAAGVAHEIRNPLSALRGFAQYFAKKLAGKQPDENYAQTMVR 442 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGEKI 109 + + + + LG + +E + D + Sbjct: 443 EADRLNRVITDLLYLARPRAIEPREVSLGQLAAELESLVRFDAGKLGVHMRTSLGPDLVM 502 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLARFP 161 + LLNL + + +L + + IS S ++ G Sbjct: 503 ADEDALKQALLNLVLNSLDALAQCPQPAAGVGREIHISSMASDGGVWVFVRDTGPGM-SR 561 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ Q + + + V ++ R + ++ Sbjct: 562 EQREQAFEPFYTTKKKGTGLGLALVHKTMRDHGGRAQIDSEVGRGTTVALFFP 614 >gi|77361752|ref|YP_341327.1| osmolarity sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76876663|emb|CAI87885.1| sensory histidine kinase (phosphorylase) in two-component regulatory system with OmpR, regulates ompF and ompC expression, senses osmolarity (OmpR family) [Pseudoalteromonas haloplanktis TAC125] Length = 433 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 20/204 (9%), Positives = 58/204 (28%), Gaps = 6/204 (2%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 LL + + HD+ +P+ I + E++ + E + + ++ + Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMADEDDYLREGIIYDIEDMNGIIDQFIEYLRHHKREE 286 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 D + ++ V G + +++ N+ A Sbjct: 287 LSCEDINALVAEVVHTELKHQRVITFKGNPSIGNIPISAVAIKRVITNMIENALRYSEGD 346 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190 +V +K + ++ +G E F G+ + + + + Sbjct: 347 IEVLCYFNSNKKYVVIAVNDSGPGIPEGELESVFEPFKQGDTARGSEGSGLGLAIIKRII 406 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + L Sbjct: 407 DMHDGKVKLSNRPEGGLSAQIYLP 430 >gi|312829880|emb|CBX34722.1| sensor protein srrB (Staphylococcal respiratory responseprotein B) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727652|gb|EGG64108.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21172] Length = 564 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 405 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 406 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562 >gi|303246319|ref|ZP_07332599.1| histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492382|gb|EFL52254.1| histidine kinase [Desulfovibrio fructosovorans JJ] Length = 822 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + LVA+ L + + H+I +P+G I ELL + + + + + + Sbjct: 584 RRMREQMRQTEKLVAVGKLAAGLAHEINNPLGVIACYAELLRQNETDPQALDDLAVIERH 643 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDL 111 AI+ K +R + + G DI + A R++ + Sbjct: 644 AIMAKKVLRDLLDFARPRQASTGPCDIAALLKSLSRLFEVQAQARKVRLETTIDDNLPVA 703 Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKFT 165 + ++L NL + A ++ + + NG + Sbjct: 704 RADASALEQVLSNLLLNALDAVSPETGEVRIAARPGPDDDSVSILVSDNGPGIPPQDLT- 762 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V L + R+ E D V + +L Sbjct: 763 RIFDPFFTTKEAGRGSGLGLAVVFGLLRDMGGRVEVENAD--GAVFTVILP 811 >gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 795 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 +N+ L + L + S + H++ +P+ AI ELL Q I + Sbjct: 559 QNLQL-LEAARLKSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPINSQQIDMVQRILKN 617 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------ 104 + L G ++E D + + + Sbjct: 618 GKNLLMLINNILDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEKILSMSVYIYLD 677 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161 ++ ++L+NL A RG + S ++ + ++ G + P Sbjct: 678 NPCIVNDKSRLRQVLVNLLSNAVKFTERGSIYIHVSELSADKLLIEIRDTGIGIAETQIP 737 Query: 162 EKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + L + K ++ E L + Sbjct: 738 HIFEKFRQVDQTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGSSFRLELPR 793 >gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 1037 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN S L + + + H+I +P+ AI +L E+E + + + + Sbjct: 665 AKNRAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 722 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105 + + + ++E ++ ++ +K V +S+ Sbjct: 723 LLLQLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLSPEKNVTLSFEPGLPE 782 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A G F + G +K Sbjct: 783 CHIHSERNRLSQLVINLVTNAIKFTQEGSIRFGYKLQDDKMLYFYVSDTGCGI-PEDKQE 841 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + +L + L Sbjct: 842 SIFGRFVKLNNFAQGTGLGLSICQMLVQHMGGNIGLTSKPGEGSTFWFTLP 892 >gi|229156703|ref|ZP_04284790.1| hypothetical protein bcere0010_28880 [Bacillus cereus ATCC 4342] gi|228626623|gb|EEK83363.1| hypothetical protein bcere0010_28880 [Bacillus cereus ATCC 4342] Length = 801 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLP 795 >gi|162449407|ref|YP_001611774.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159989|emb|CAN91294.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 469 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 58/230 (25%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + M L A L + HD+ +P+GAI L + Q ++ Sbjct: 206 REARDAARMALAARDELMGIVAHDLRNPLGAIALKAAWLRRGADSERTRQQAESIEHVSL 265 Query: 62 IRLK---------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + F + + + E ++ Sbjct: 266 RMERLIRTMLDVTTMQASRFSVTPKPFAVEDLLHETMETFGPLSESKQVRFEQSLKEPGL 325 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L NL A P+ G+V +SV F++ +G + Sbjct: 326 VIRAEWERVLQVLSNLLGNALKFTPKSGQVILSVDRDGAMARFAVLDSGPGIPPQNLTSI 385 Query: 167 I--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y + + R+ E L Sbjct: 386 FERFWKDETPGKKGTGLGLYIAKGIVDAHGGRIWVESEVGQGARFYFTLP 435 >gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BL21(DE3)] gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 589 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 60/222 (27%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------SSMSAIIRLKFM---- 67 + + H++ +P+ I E L + +E + + + S + + Sbjct: 368 FVANVSHELRTPVTVIKGYAEALIDGAMETDPERARKFVGIILSHSERLAALIGDLLTLS 427 Query: 68 -----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSRERAKIL 119 + T + +E + + S + ++L Sbjct: 428 QLEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRLEQVL 487 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A P GG ++ S +N +K G + +I + Sbjct: 488 VNLLDNAIKYTPEGGAISFSAAVKENMVRIGVKDTGVGIPPKDLP-RIFERFYRVDTARS 546 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + E ++K Sbjct: 547 RDEGGTGLGLSIVKHIVQLHGGAVGVESEPGKGSEFWFTIKK 588 >gi|15924481|ref|NP_372015.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927072|ref|NP_374605.1| respiratory response protein SrrB [Staphylococcus aureus subsp. aureus N315] gi|156979810|ref|YP_001442069.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|13701290|dbj|BAB42584.1| staphylococcal respiratory response protein SrrB [Staphylococcus aureus subsp. aureus N315] gi|14247262|dbj|BAB57653.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|156721945|dbj|BAF78362.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|285817172|gb|ADC37659.1| Staphylococcal respiratory response protein SrrB [Staphylococcus aureus 04-02981] Length = 588 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 429 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 489 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586 >gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046] gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68] gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180] gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|148267975|ref|YP_001246918.1| integral membrane sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|150394040|ref|YP_001316715.1| histidine kinase [Staphylococcus aureus subsp. aureus JH1] gi|253314859|ref|ZP_04838072.1| histidine kinase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006277|ref|ZP_05144878.2| histidine kinase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793568|ref|ZP_05642547.1| sensor protein srrB [Staphylococcus aureus A9781] gi|258407190|ref|ZP_05680338.1| sensor protein srrB [Staphylococcus aureus A9763] gi|258420274|ref|ZP_05683222.1| sensor protein srrB [Staphylococcus aureus A9719] gi|258437322|ref|ZP_05689306.1| sensor protein srrB [Staphylococcus aureus A9299] gi|258443527|ref|ZP_05691866.1| sensor protein srrB [Staphylococcus aureus A8115] gi|258446734|ref|ZP_05694888.1| sensor protein srrB [Staphylococcus aureus A6300] gi|258448649|ref|ZP_05696761.1| sensor protein srrB [Staphylococcus aureus A6224] gi|258454265|ref|ZP_05702235.1| sensor protein srrB [Staphylococcus aureus A5937] gi|269203118|ref|YP_003282387.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus ED98] gi|282892990|ref|ZP_06301224.1| sensor protein srrB [Staphylococcus aureus A8117] gi|282928961|ref|ZP_06336548.1| sensor protein srrB [Staphylococcus aureus A10102] gi|295406611|ref|ZP_06816416.1| sensor protein srrB [Staphylococcus aureus A8819] gi|296276359|ref|ZP_06858866.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus MR1] gi|297245805|ref|ZP_06929670.1| sensor protein srrB [Staphylococcus aureus A8796] gi|76363426|sp|Q99TZ9|SRRB_STAAM RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|76363427|sp|Q7A5H7|SRRB_STAAN RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal respiratory response protein B gi|147741044|gb|ABQ49342.1| integral membrane sensor signal transduction histidine kinase [Staphylococcus aureus subsp. aureus JH9] gi|149946492|gb|ABR52428.1| Histidine kinase [Staphylococcus aureus subsp. aureus JH1] gi|257787540|gb|EEV25880.1| sensor protein srrB [Staphylococcus aureus A9781] gi|257841217|gb|EEV65663.1| sensor protein srrB [Staphylococcus aureus A9763] gi|257843737|gb|EEV68138.1| sensor protein srrB [Staphylococcus aureus A9719] gi|257848527|gb|EEV72515.1| sensor protein srrB [Staphylococcus aureus A9299] gi|257850933|gb|EEV74876.1| sensor protein srrB [Staphylococcus aureus A8115] gi|257854309|gb|EEV77258.1| sensor protein srrB [Staphylococcus aureus A6300] gi|257857927|gb|EEV80816.1| sensor protein srrB [Staphylococcus aureus A6224] gi|257863544|gb|EEV86302.1| sensor protein srrB [Staphylococcus aureus A5937] gi|262075408|gb|ACY11381.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus ED98] gi|282589368|gb|EFB94459.1| sensor protein srrB [Staphylococcus aureus A10102] gi|282764308|gb|EFC04434.1| sensor protein srrB [Staphylococcus aureus A8117] gi|294968358|gb|EFG44382.1| sensor protein srrB [Staphylococcus aureus A8819] gi|297177456|gb|EFH36708.1| sensor protein srrB [Staphylococcus aureus A8796] Length = 583 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581 >gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|260776385|ref|ZP_05885280.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio coralliilyticus ATCC BAA-450] gi|260607608|gb|EEX33873.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio coralliilyticus ATCC BAA-450] Length = 485 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 67/234 (28%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + + L L + + I H++ +P+ AI + + ++ + + + Sbjct: 241 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADN-GRRFLDKNKLDRVDDNLS 299 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IAVDKRVQVSWTGE 107 M S D + + RV+++ Sbjct: 300 RISALTDRMAKISNQLKSFTRKSDTSDKSVLDIEPILLSAKELVAPQIKSYRVELATHFN 359 Query: 108 KID-----LSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARF 160 + + ++L+NL A ++ + + + ++ + + NG Sbjct: 360 HTTGSAEVNAIQLEQVLINLITNAAQAVEEQDERIVELRTEQTEASIMIYIDDNGPGI-K 418 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + +L E + L Sbjct: 419 KDQAKHLFEPFFTTKKNGLGLGLSISQQIIKAMDGQLTVETSPYGGARFAIQLP 472 >gi|229093771|ref|ZP_04224870.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42] gi|228689656|gb|EEL43464.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42] Length = 484 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + + + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAKSELGKGTSIFFSLEK 478 >gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 110-3] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1248 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 52/237 (21%), Gaps = 27/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K L S L + + + H+I +P+ I LL + + + + S SA Sbjct: 587 KKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTELSPKQRDFTQTISSSAD 646 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + G+V + I + V Sbjct: 647 ALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAARAASREIELASLVYHDVP 706 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP 161 ++L NL A +G V + + FS+ G Sbjct: 707 TNLRGDPGRLRQVLTNLIGNAVKFTDKGEVVVRANCQENAETHTTIRFSVTDTGIGI-SS 765 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E ++ + L + Sbjct: 766 EAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIGVTSEAGKGSTFWFT 822 >gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii CDC 3083-94] gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii CDC 3083-94] Length = 949 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC 43183] gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC 43183] Length = 852 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 18/226 (7%), Positives = 53/226 (23%), Gaps = 18/226 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59 L + L + + + H+I +P+ AI +LL + + ++ I ++ Sbjct: 621 RDRALQADRLKSAFLANMSHEIRTPLNAIVGFSDLLKDLQAFSSEEVQQFVETININCTL 680 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107 + + S + + ++ + + + Sbjct: 681 LLALINDILDLSRIESGTMDFQFSSYNLTFIMQEVYDSQRLSMPQGVELCTDFPEGADKY 740 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L NL A +G D ++ G ++ Sbjct: 741 ITTDAVRLKQVLNNLINNAKKFTVQGSITLGYRVDESGYTTVFVEDTGAGISDEDQKHIF 800 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + Sbjct: 801 ERFYKADSFTQGAGLGLSICQTIVERIHGTITVTSKPGRGTRFEVR 846 >gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] Length = 837 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 58/234 (24%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LD--EVGIEDEVMQLIRLSS 57 + + + + + + H++ +P+ +I EL L + E+ I + Sbjct: 591 REARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFAELGHLRSRKSPQFSEMFNDIHSAG 650 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108 + + + +V + + + +++ Sbjct: 651 QRMLALVNDLLDVAKLESAVGVIHLERIDLRGLIRPIARELEPLQHQKQIDLRLDLENFP 710 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKF 164 + + +++ N+ A P G+V + + + G E Sbjct: 711 MIAKADPVRFQQVVRNMLANAIKFSPNHGRVDVIGRFDDHGNICIDFSDQGPGIPPQELD 770 Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + D + L Sbjct: 771 QIFQPFVQSSKTKDGSGGTGLGLAICRKIIDAMDGTISAKNKPDGGAIFRITLP 824 >gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|326330531|ref|ZP_08196839.1| two-component sensor histidine kinase [Nocardioidaceae bacterium Broad-1] gi|325951806|gb|EGD43838.1| two-component sensor histidine kinase [Nocardioidaceae bacterium Broad-1] Length = 494 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 55/206 (26%), Gaps = 16/206 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGS----- 76 H++ +P+ I LELLDE + + +L + + L + Sbjct: 279 HELRTPLTIIGGHLELLDESDPAEVEQTRRLALDEVDRMSRLVGDLILLAKHDRPDFLTL 338 Query: 77 --VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 VD DI D + + G + + +L L A G Sbjct: 339 EEVDVDTLTEDILAKASALADRDWHLDAATPGTWRLDPQRVTQAMLQLCDNAVGHTAPGD 398 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVIL 188 ++ + ++ G E +I + + V Sbjct: 399 RIAVGSATVDGTLRLWVRDTGPGV-PAEDRERIFERFARGSETGSGDRPGLGLGLAIVSA 457 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 +A + + E + L Sbjct: 458 IATAHGGTVGVEDATPAGARFTLTLP 483 >gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 1049 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 66/228 (28%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + L + + H+I +P+ AI +L E E + + + + Sbjct: 679 ARDRAEESNRLKTAFL--ANMSHEIRTPLNAIVGFSAILASTDEEQEKQEYVSIIENNNA 736 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + D + + E VI + + E+ Sbjct: 737 LLLQLIGDILDLSKIEAGTLDFIHTDFDLNELMREKENVIRMKVREGVELLFEQKYEQCS 796 Query: 111 LSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +R ++ + + + + + E F + G+ +K Q+ Sbjct: 797 VCTDRNRLSQVIINLLTNAAKFTQTGSIRFGYEMRDRELYFWVSDTGSGI-PADKTEQVF 855 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + ++ R+ E + +L Sbjct: 856 ERFVKLNTFKQGTGLGLSICKMIVEHLGGRIGVESEEGKGSKFWFILP 903 >gi|307635037|gb|ADI85238.2| osmosensitive potassium channel sensor histidine kinase KdpD [Geobacter sulfurreducens KN400] Length = 899 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 71/233 (30%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57 A+ + +L ALL S I HD+ +P+ AI +L+ L + ++ ++L+ + Sbjct: 655 AEQAQILQARENLERALLNS-ISHDLRTPLVAITGALDTLRDKVHTLADESRLELLDTAW 713 Query: 58 MSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 A +F+ T + L + ++ + V + Sbjct: 714 EEAERLNRFVGNLLDMTRLESGAIKLKRELSDVQDLIGCALAALERRIGERGIDVRLAPD 773 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++L+NL A P V I+ + + G + Sbjct: 774 LPLVRIDMVLMTQVLVNLLDNALKYSPPDSGVEITARVDGGRLRIEMADRGPGIPEQDLK 833 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + + E + + L Sbjct: 834 RVFDKFYRIAVPEGAQGTGLGLSICKGIVEAHGGSIRAENRTGGGLRVIVTLP 886 >gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82] gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15] gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O83:H1 str. NRG 857C] gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 16-3] gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|42779796|ref|NP_977043.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42735713|gb|AAS39651.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 463 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E + ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSSKQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + +F I +K ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHNFLTRIAEKVNAIYKEKHIRVSFSCPPTLLVNLDEQRFEQVVV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 356 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454 >gi|34557363|ref|NP_907178.1| hybrid histidine kinase [Wolinella succinogenes DSM 1740] gi|34483079|emb|CAE10078.1| HYBRID HISTIDINE KINASE [Wolinella succinogenes] Length = 1019 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 K +L + + + H+I +P+ +I ELL ++ ++ I S Sbjct: 545 EKEQRIQAQQANLAKSEFLANMSHEIRTPLNSILGFAELLKPALEKNERFAGYLESIATS 604 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS 103 + ++ + + D L ++E + +Q Sbjct: 605 GQNLLLIIDDILDLSKIESGKMEIHPSPTDIKAFLKELESLFLPSALKKNLSYELNLQEG 664 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLAR 159 + ++L NL A G ++ + G Sbjct: 665 IPDFLVMDEIRLRQVLFNLLGNAFKFTHEGKVSCSFRFQRQSASKITLFIEVSDTGIGIP 724 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ +I + + L L E L Sbjct: 725 LSQQS-RIFEPFTQQDAQNTRKYGGTGLGLTITKRLVEIMGGDLTLESRPKWGSTFFITL 783 Query: 214 E 214 Sbjct: 784 P 784 >gi|16767427|ref|NP_463042.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205358145|ref|ZP_02576065.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|17865735|sp|P37461|ZRAS_SALTY RecName: Full=Sensor protein zraS gi|6960345|gb|AAF33505.1| Salmonella typhimurium sensor protein (HYDH) (SW:P37461); contains similarity to Pfam domain PF00512 (signal), Score=270.1, E=2.9e-77, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422732|gb|AAL23001.1| sensory kinase in two component regulatory system with HydG [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327269|gb|EDZ14033.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249277|emb|CBG27139.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301160669|emb|CBW20200.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915279|dbj|BAJ39253.1| sensor kinase ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223373|gb|EFX48440.1| Sensor protein of zinc sigma-54-dependent two-component system [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990992|gb|AEF09975.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 465 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|88860966|ref|ZP_01135602.1| two-component system sensor histidine kinase/response [Pseudoalteromonas tunicata D2] gi|88817179|gb|EAR26998.1| two-component system sensor histidine kinase/response [Pseudoalteromonas tunicata D2] Length = 1340 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 20/230 (8%) Query: 5 ICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 SM L+A L + I H+ +P+ I L L + + E + + ++ Sbjct: 820 EQEKRHSMKLIAAKDTLLATISHEFKTPLTLILGPLAGLIAKTDKAADREKLIAMARNAE 879 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS- 112 + + + + + + ++ + + + Sbjct: 880 RLLALVNNVLQHKSIHNPDSAPDNIDLYALLHTQIEGFCVLAEQHQISLVLSNDSHANCV 939 Query: 113 -----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A P GG+VT+ + S S+ G E Sbjct: 940 VSFQANAADQLVANLLHNAIKFTPAGGQVTVLLIKSDENCFLSITDTGIGIDADELQQIF 999 Query: 168 VDG---NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + ++ + V + + + I + L Sbjct: 1000 TQGKRGRLTQELEGSGLGLSIVKDIVTRHGGEITVTSIPMQGSTFTVTLP 1049 >gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 643 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 21/250 (8%), Positives = 61/250 (24%), Gaps = 38/250 (15%) Query: 3 KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------- 48 + L + ++ + S + H++ +P+ +I +LL++ + Sbjct: 391 EEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLNKEFTRNFLPLVSPEGALARK 450 Query: 49 ------VMQLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIE 91 + +I + M + + + Sbjct: 451 GKRIRENLAIISHEGERLTRLINDVLDLNKIESGSMGWRDEELDMNEVIEVAASSVSGMF 510 Query: 92 DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 ++ R ++ I R+R + +L + + G VT+ ++ + Sbjct: 511 AQTTLELRTEIQPGLPHIVADRDRMQQVLINLLNNASKFTEKGSVTLRAFPRFSQLRVEV 570 Query: 152 KINGNLARFPEKFTQIVDGNVES-------TIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 G ++ + + + R+ E Sbjct: 571 VDTGTGIHPEDQSQIFEKFHQTHTDDTMVNKPKGTGLGLTICREIIEHYGGRIWVESEVG 630 Query: 205 HNVVLSALLE 214 L Sbjct: 631 VGSTFIFTLP 640 >gi|291279230|ref|YP_003496065.1| two-component sensor histidine kinase [Deferribacter desulfuricans SSM1] gi|290753932|dbj|BAI80309.1| two-component sensor histidine kinase [Deferribacter desulfuricans SSM1] Length = 371 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 66/224 (29%), Gaps = 12/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 + + + ++ + I H+I +P+G+I LL + + +++ Sbjct: 148 EEEHRRDEHLKSMGVMAANIAHEIRNPLGSIELFASLLARDLKNDKEKRVLIDSVLKGVK 207 Query: 58 MSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + D + + + + + + ++ + Sbjct: 208 SINNTISNILLFTKEVTLSKKEYYLADIVDDVVLYLRHLMNDKKIKFINKIDDDFKIYCD 267 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 S ++ +NL A ++ G++ I + + ++ ++ NG +I Sbjct: 268 SELMKQVFMNLIHNAIDAVDANGEIRIYCKQEEKFDVIVVEDNGCGIDEEFIK-KIFIPF 326 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + V + + + E L + Sbjct: 327 HTSKTKGTGLGLSIVYKIIKAHSGNIYVESDGQSFTRFIIKLGR 370 >gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14] Length = 933 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|229155006|ref|ZP_04283120.1| hypothetical protein bcere0010_12000 [Bacillus cereus ATCC 4342] gi|228628564|gb|EEK85277.1| hypothetical protein bcere0010_12000 [Bacillus cereus ATCC 4342] Length = 402 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL +E +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSNTCTEEERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQKLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++PRGG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPRGGDLYFTLVPDHKHIQLYIKDTGIGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|220917056|ref|YP_002492360.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954910|gb|ACL65294.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 560 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 77/236 (32%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED------- 47 + + S L +L L + I H+I +P+ I +L LD+ +D Sbjct: 320 LRAAQDQLVRSEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLDQGVPDDATRKTLV 379 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101 + + L++ + ++ + + L + + ++ +Q Sbjct: 380 KHLLLVQRETERCSAIVRNLLDFARERPLTLKDVDLDAVVEEGLQLLSNQINIQNVTLEK 439 Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLA 158 + + + +N+ M A ++ RGGK+T+ S + G Sbjct: 440 RLVPLPPVEGDFGQLRQACVNVIMNACEAMARGGKLTVESSASAGGGWVEIAFTDTGPGI 499 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ ++I D + + V + + ++ + ++ L Sbjct: 500 -PPDHLSKIFDPFFTTKERGTGLGLSVVYGIVERHHGKIEIQSEVGKGTRIAIRLP 554 >gi|117925904|ref|YP_866521.1| histidine kinase [Magnetococcus sp. MC-1] gi|117609660|gb|ABK45115.1| histidine kinase [Magnetococcus sp. MC-1] Length = 667 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 25/228 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 L+ +L + I H+I +P+ AI ELL E + E + + + + + L + Sbjct: 275 LNKEK--SLFIANISHEIRTPLNAIIGLGELLQEEITDFEHKRQLNILTSAGDNLLLLIN 332 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLS 112 + + + + +++ + + Sbjct: 333 DILHLSKIESGSMLIEENIFSLQNLLNNTVGMFEQGASKKGLYLKVEVKNALPSFVKGDI 392 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++L NL A GG + FS+ G +I Sbjct: 393 HRLRQVLFNLLGNAVKFTSCGGVTLTVSALENDRLSFSVSDTGIGIPSS-LQEKIFLPFQ 451 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + L E + + L Sbjct: 452 QADSSITRKFGGTGLGLAITQSLIVQMQGNLSVESHEGTGSTFTFDLP 499 >gi|117925955|ref|YP_866572.1| histidine kinase [Magnetococcus sp. MC-1] gi|117609711|gb|ABK45166.1| histidine kinase [Magnetococcus sp. MC-1] Length = 667 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 25/228 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 L+ +L + I H+I +P+ AI ELL E + E + + + + + L + Sbjct: 275 LNKEK--SLFIANISHEIRTPLNAIIGLGELLQEEITDFEHKRQLNILTSAGDNLLLLIN 332 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLS 112 + + + + +++ + + Sbjct: 333 DILHLSKIESGSMLIEENIFSLQNLLNNTVGMFEQGASKKGLYLKVEVKNALPSFVKGDI 392 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++L NL A GG + FS+ G +I Sbjct: 393 HRLRQVLFNLLGNAVKFTSCGGVTLTVSALENDRLSFSVSDTGIGIPSS-LQEKIFLPFQ 451 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + L E + + L Sbjct: 452 QADSSITRKFGGTGLGLAITQSLIVQMQGNLSVESHEGTGSTFTFDLP 499 >gi|313902446|ref|ZP_07835848.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467244|gb|EFR62756.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 521 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 63/238 (26%), Gaps = 31/238 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50 + ++ A+L I H++ +P+ I E L + +E Sbjct: 245 LRRSQALR------RAMLA-TISHELRTPVTVIRGLGEALRDGLVEAGPAARRQAGQIVA 297 Query: 51 ----------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 L +L+ + + + L + + V Sbjct: 298 EAERLGRLIDDLFQLAQIETGQLDLRLERFAAGPWLEERATALEALVRERGARWQVRVDP 357 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++ + D A++L NL A G+V + + NG Sbjct: 358 GLAGAWLEADPH-RLAQVLGNLVDNAARHAGPEGQVRLDAVLVPGGIRIEVADNGPGIDP 416 Query: 161 PE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F G + + V L + R+ E L +L + Sbjct: 417 ADLPRIFEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVESAPGQGTRLWFVLPR 474 >gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1102 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 27/221 (12%) Query: 20 SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF---MRLA 70 + + H++ +P+ AI E L + + + + I S + + + Sbjct: 601 ANMSHELRTPLTAILGLSEALRDEVFGPLTAKQHQKLATIEQSGQHLLELINDVLDLSKI 660 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------ERAKILLN 121 + + Q R ++L+N Sbjct: 661 ESGKMELHLSNTDIQGLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLLIN 720 Query: 122 LFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGN------VE 173 L A P G V I V+ F + G PE ++ Sbjct: 721 LLSNAVKFTPESGAVWIEVKGDLEHETLQFIVADTGIGI-APENIGKLFQPFVQVDSSFT 779 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E + L Sbjct: 780 RRYAGTGLGLALVRQVIELHGGSVSLESELGSGSRFTVSLP 820 >gi|260175349|ref|ZP_05761761.1| putative two-component system, sensor kinase [Bacteroides sp. D2] gi|315923581|ref|ZP_07919821.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697456|gb|EFS34291.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 570 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 333 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 392 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105 I+ L+ + +T + + L + VQ+ + Sbjct: 393 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQILFTEKADQ 452 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A P+G + + F +K G +K Sbjct: 453 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 511 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 512 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 564 >gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] Length = 698 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 65/230 (28%), Gaps = 23/230 (10%) Query: 8 NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 + ++ + + + H++ +P+ I +LL + ++ E + S Sbjct: 173 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 232 Query: 64 -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110 + + G +D D+ + + + + + ++ Sbjct: 233 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 292 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEK---F 164 + +IL+NL A GG S + + +++ G F Sbjct: 293 DADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 352 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ ++ + + L + +L Sbjct: 353 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVMLP 402 >gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus DSM 14838] gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus DSM 14838] Length = 980 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 19/227 (8%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI 61 L S L + + + H+I +P+ AI LL ++ +E + +I ++ + Sbjct: 608 REKALESERLKSAFLANMSHEIRTPLNAIIGFSSLLTTTEDEHEREEFISIIENNNQLLL 667 Query: 62 IRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + V + Sbjct: 668 QLISDILDLSKIEANTLDFNYQNVDLNGLARDVERTVRRRLQPNVVLNFIPGVTECHVQT 727 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++L+NL + A G + E F +K G E +I + Sbjct: 728 ERNRLSQVLINLLVNASKFTSTGSIT-FGYEIRGEELYFYVKDTGRGI-SQEDQNKIFER 785 Query: 171 NV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 ++ + + + K R+ E D + Sbjct: 786 FTKVDTFTQGTGLGLSICKNIIEKMKGRIGVESEGKDKGSTFWFTIP 832 >gi|222056070|ref|YP_002538432.1| histidine kinase [Geobacter sp. FRC-32] gi|221565359|gb|ACM21331.1| histidine kinase [Geobacter sp. FRC-32] Length = 661 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 A++ + L ALL S + HD+ +P+ +I +L L E ++L+ + Sbjct: 425 AEHAQILQAREKLERALLNS-VSHDLRTPLVSITGALSTLRNEGCAPHEKGRLELVDAAW 483 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 A +F+ T D +G + + + +S Sbjct: 484 EEAERLNRFVGNLLDMTRVEAGELKLKKEPCDIQDLVGCALAPLDARLQDREVLIDLSDD 543 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++L+NL + I + + I +++ G E Sbjct: 544 LPLVQMDMVFMTQVLVNLLENGMKYSTPRTPLAIWAKTDDDLIILAVEDRGPGVPEKELV 603 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + + E I+ + + + Sbjct: 604 KIFDKFYRVPVPEGAGGTGLGLSICKGIVEAHGGTIRAENIEGGGLRVLVAIP 656 >gi|86160638|ref|YP_467423.1| signal transduction histidine kinase NtrB [Anaeromyxobacter dehalogenans 2CP-C] gi|85777149|gb|ABC83986.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-C] Length = 627 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 + +N+ M+ V L + HD + + + ELL D + + + Sbjct: 244 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVVLGYSELLVRDLPATDPRLRECADGIIE 302 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +A L R + + D+ +++ I V + + Sbjct: 303 AAHRAVGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLGRAIGERIEVTTALQEHPWPV 362 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDS-------------KNENIFSLKING 155 + ++ L A ++P GG + I+ + +++ +G Sbjct: 363 LADADQLAQVLLNLAVNARDAMPDGGPLHIATANVEVPQALRELSLPAGRYVTLTVRDSG 422 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + E + L Sbjct: 423 VGM-TEDVRARIFEPFFTTKETGTGLGLATVYGIVRQAGGAIRVESRPGAGTSFTVYLP 480 >gi|328953637|ref|YP_004370971.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453961|gb|AEB09790.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 625 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 64/225 (28%), Gaps = 16/225 (7%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSL----ELLD-EVGIEDEVMQLIRLSS 57 L + L + + I H+I +P+ I E LD E +Q+I Sbjct: 399 QEKLLQNERLAILGRMAAHISHEIKNPLMVIGGFARQVRENLDGSPEKNLEKLQIIIDEI 458 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLS 112 L + ++ + L + R+++ + + Sbjct: 459 RRLEDFLLEVGRYGKFSEPHLVVGDLNVLIQEVCRFLDPILEEKRVRLKLDLDPKLPTFA 518 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ LNL + ++ G +T + + + + G PE +I Sbjct: 519 FDPEHLRQVFLNLAKNSLEAMEHSGTLTFASRTVPGHILVEISDTGVGI-PPEALAKIFQ 577 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + ++ + Sbjct: 578 PFFSTKPRGSGLGLAISQQIMAAHQGEIQIASEPGRGTRVTLSFQ 622 >gi|323698790|ref|ZP_08110702.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323458722|gb|EGB14587.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 475 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 76/232 (32%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 + + + LV++ L S I H++ +P+ + + + L E + ++ Sbjct: 228 LDDRQEQLIEARKLVSIGTLTSGIAHELNNPLNNVSLTADTLLEELDDLPEAEVRELLGD 287 Query: 55 ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107 +S L F R + + +++ +V+ Sbjct: 288 IINETGRASEVVRNLLDFSREEERPLARLSMNNVIRQTLKLVGNQLSLNGIKVEADLPEG 347 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 D+ + ++ +NLF+ A ++ +GG + + V+ + + G + Sbjct: 348 LPDIHGDMHYLQQVFINLFLNADQAMEKGGTLGVKVRRDHDRLCVDVSDTGCGM-DRDTL 406 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I D + + + + ++ + + + + L Sbjct: 407 SRIFDPFFTTKPVGKGTGLGLSIIYGILKKHGGGIDVQSEEGVGTTFTVCLP 458 >gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 595 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 358 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 413 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW------ 104 L R+ G+ + L ++I F + K Q+ Sbjct: 414 ESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDN 473 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL A + G V I + + ++ +G + Sbjct: 474 EDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDL 533 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K + + L Sbjct: 534 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589 >gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 595 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 358 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 413 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW------ 104 L R+ G+ + L ++I F + K Q+ Sbjct: 414 ESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDN 473 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL A + G V I + + ++ +G + Sbjct: 474 EDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDL 533 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K + + L Sbjct: 534 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589 >gi|187776723|ref|ZP_02993196.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC 15579] gi|187775382|gb|EDU39184.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC 15579] Length = 906 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 KN + S L + L I HD+ SP+ I S+ ELL V Sbjct: 666 QKNSKLEIESERLRSNLLRSISHDLRSPLAGIKGSVSTIIENGNLISNDKKEELLQGVYD 725 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + E + + + +S + V+ +I K Sbjct: 726 DTEWLIRLVENLLSMTRFEEGNMEIKKNMELVEEVIYEAVQRTSKRFKDRKIKVKIPENV 785 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L+NL + P+ + + + + + F + NGN Sbjct: 786 IMAPMDGSLIKQVLINLLDNSLKFTPKDSLIEVRAYEKEEKVFFEVIDNGNGISEEILPH 845 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + V + K Sbjct: 846 IFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHNGMIDAYNKKAGGAVFRFYIPK 900 >gi|167630855|ref|YP_001681354.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] gi|167593595|gb|ABZ85343.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] Length = 558 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 30/237 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58 + + SM L + + HD+ +P+ I E L + ++ ++I + Sbjct: 321 QLARGMQSMR---DLAANVSHDLRTPLFLIQGYAEALRDDMAKTPDDRRQMAEIILEETD 377 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107 ++ M +VD + + + + + + Sbjct: 378 RMQRLVQDMLQLAQLESGYFELKREAVDPEALIYGVARKLSGAADERQIRLICLAYPGDA 437 Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + L+NL A P GG+V + + FS+ +G + Sbjct: 438 ALPAIHADPDRLTQALINLVDNALRHTPAGGEVVLGLTAQAQSVRFSVDDSGPGLAEADL 497 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + V + + + E + Sbjct: 498 -DRIWERFYRGEKSRSRKTPGTGLGLSIVKAIVESHGGSVGAENRTGGGASFFFTIP 553 >gi|94265379|ref|ZP_01289133.1| PAS [delta proteobacterium MLMS-1] gi|93454132|gb|EAT04461.1| PAS [delta proteobacterium MLMS-1] Length = 794 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 70/238 (29%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLI 53 MA+ + + L+ I HD + + I +LL D ++++ Sbjct: 415 MAEARELQADKLSSLGLMAGGIAHDFNNILTPITMHAQLLRRKLPADGSAAGLDQILKAA 474 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + +S L F R V + + + + ++ + + ++ E+ ++ Sbjct: 475 QRASALVRQILDFSRQGKHEPVQVQLGVIIKEAIKFLQAAVPANVTIRREIKSERDRVAA 534 Query: 114 ERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++L + ++ + + ++ NG+ Sbjct: 535 DPTQMLQVVMNLSLNAVQAIGDSEGVVTIELTETEPPSGAEKSGVSHWLRLAVCDNGSGI 594 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE Q+ D + + + + + ++ + L Sbjct: 595 -DPEHLPQLFDPFFTTKEHGEGTGMGLPVAHGIVTRHGGQIEVQSDPGAGTCFEVYLP 651 >gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 448 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 71/244 (29%), Gaps = 33/244 (13%) Query: 4 NICFNLSSMD---LVALLC--------SRICHDIISPIGAIHNSLELLDEV----GIEDE 48 + +L S + L A + + H++ +P+ I ++L + E Sbjct: 188 ELRLSLESAEQSRLAAEAANRAKDEFLALLSHELRTPLNPIIGWTQMLKRGSVAADKQVE 247 Query: 49 VMQLIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIE----QVIEDFIAV 96 V+++I ++ ++ + V + + +D Sbjct: 248 VLEIIERNAKLQNQLIQDLLDVARIEQGKFSHRPQPVILSGVVQAAVEAVRTLAKDAGVA 307 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + E + +++ NL A P GG V + + ++ + + +G Sbjct: 308 LEVEVAERLPEVMVDPTRMQQVVWNLLTNAIKFTPSGGWVQLHLVEAADCLCLVVSDSGT 367 Query: 157 LARF---PEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLS 210 P F + + + V + + R+ + V + Sbjct: 368 GISPAFIPHLFERFRQAGDAGTRRQGGLGLGLFIVRYIVELHGGRVWAKSDGQGKGAVFT 427 Query: 211 ALLE 214 L Sbjct: 428 VELP 431 >gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71] Length = 949 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74] Length = 933 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519] gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii] Length = 602 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 65/235 (27%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 ++I + D+ + + H++ +PI I + E L ++ + +++I + Sbjct: 361 QDITESQRLEDMRREFVANVSHELKTPITTIKSYSETLLCGALEDKELSKNFVEVIENEA 420 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SWT 105 +K + + I V Sbjct: 421 DRMSSLVKDLLQLSHMDYEKVVWEMHHLDLREIVTDSVRKLEVHFQNKNQKLNMKISDEA 480 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++++NL A P G + IS Q IF ++ +G + Sbjct: 481 VPIYADRGKIQQVIINLLTNAIKYTPENGNIRISAQVVDKNAIFQIQDSGIGIPKEDIK- 539 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + ++K + + + + Sbjct: 540 RIFERFYRVDKGRSRAQGGTGLGLSIAHNIIKQHKGSIKVSSELEKGSIFTVYFP 594 >gi|322420713|ref|YP_004199936.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127100|gb|ADW14660.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 635 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 66/232 (28%), Gaps = 27/232 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVMQLI 53 + + + ++ L + I H+I +P+ ++ E L +Q+I Sbjct: 401 IQTEKMSSIGVLATGIAHEINNPLASVAGCAEGLLRRFNDTPGLSDDPRLDAFQHYLQVI 460 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK 108 S + + + + + L + + + + S Sbjct: 461 VRESYRCKGIIDNLLSFGRKSDGLAVNVDLNALLREIIELISHQPGFRHVSLATSLQQGL 520 Query: 109 IDLSRER---AKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++ +NL + AH + G ++ +++ +G + Sbjct: 521 PCVHGDPSALRQVCMNLLINAHQAITGEGSVEVLTCAPKGGMISVTIRDSGCGIPL-DNL 579 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + LL Sbjct: 580 DRIWDPFFTTKEAGKGIGLGLALTYSIVKRHHGEIQVKSKVGEGTEFTVLLP 631 >gi|254561745|ref|YP_003068840.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens DM4] gi|254269023|emb|CAX24984.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 903 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + + MD V L I HD + + AI +LL + + I+ + Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + A ++ + ++ +G+ + + +V Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157 + ++++NL + A ++P GG +TI + + + + G Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + + + V + +++ + + L + Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714 >gi|240139289|ref|YP_002963764.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens AM1] gi|240009261|gb|ACS40487.1| sensor hybrid histidine kinase with multiple PAS and response regulator receiver domains [Methylobacterium extorquens AM1] Length = 903 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + + MD V L I HD + + AI +LL + + I+ + Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + A ++ + ++ +G+ + + +V Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157 + ++++NL + A ++P GG +TI + + + + G Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + + + V + +++ + + L + Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714 >gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SE11] gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11] Length = 949 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|193212447|ref|YP_001998400.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085924|gb|ACF11200.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 922 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 71/240 (29%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL--- 55 + + ++ + L I HD+ + + I E+L E + +++I Sbjct: 525 EQQLYQSQKIESIGRLAGGIAHDLNNLLTPILGYSEMLLKRIREPEKSKQYVEVIHHAAL 584 Query: 56 -SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 S L F +VD + D EQ++ I D ++ + + + + Sbjct: 585 KSRELVRQLLAFSSRQSLEFRTVDLNEVIRDFEQLLRRTIRADIDIRYHLHEQPLPMRGD 644 Query: 115 RAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156 +++ + A ++P +G + + + + +++ G Sbjct: 645 ASQLEQIIMNLAVNAEDAMPAGGELIMESSLLVIKKGEEKYFEGLAAGSYALLTVRDTGE 704 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + ++ + LL Sbjct: 705 GMDQKTLS-HLFEPFYTTKPKGKGTGLGLSTVYGIVRQHGGIIQVGSERGEGTCFKILLP 763 >gi|188535331|ref|YP_001909128.1| osmolarity sensor protein [Erwinia tasmaniensis Et1/99] gi|188030373|emb|CAO98264.1| Osmolarity sensor protein [Erwinia tasmaniensis Et1/99] Length = 449 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 60/205 (29%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMAEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + + + N+ + A Sbjct: 295 QFERADLNSVLGEVVAAESGYEREIENAVLPGELMVDINPLAIKRAVANMVVNAARYGNG 354 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDIQFYYVILL 189 KV+ + F ++ NG + V G+ + + V + Sbjct: 355 WIKVSSGRELQ--RAWFQVEDNGPGIEPDQLQHLLQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + + A L Sbjct: 413 VDAHHGALEIDSSEQGGLRIRAYLP 437 >gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella dysenteriae Sd197] Length = 949 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|218530776|ref|YP_002421592.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523079|gb|ACK83664.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 903 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + + MD V L I HD + + AI +LL + + I+ + Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + A ++ + ++ +G+ + + +V Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157 + ++++NL + A ++P GG +TI + + + + G Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + + + V + +++ + + L + Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714 >gi|163852022|ref|YP_001640065.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163663627|gb|ABY30994.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 903 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + + MD V L I HD + + AI +LL + + I+ + Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + A ++ + ++ +G+ + + +V Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157 + ++++NL + A ++P GG +TI + + + + G Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + + + V + +++ + + L + Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714 >gi|197118871|ref|YP_002139298.1| response receiver sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088231|gb|ACH39502.1| response receiver sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 663 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 + + M+ V L + HD + + I +L E + + I ++ Sbjct: 285 LMEEQLRQSQKMEAVGQLAGGVAHDFNNILTVIAGYANMLMMDLPALGNEVRLAEQIAIA 344 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KI 109 + A K + + LG+I Q +E F+ + Sbjct: 345 TERAAELTKGLLAFSRKQPMAPQKLDLGEIVQRVETFLTRVIGEDIQLKTHLLPDSLPVW 404 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI------------SVQDSKNENIFSLKINGNL 157 + ++L+NL A ++ GG TI + + + + NG Sbjct: 405 VDMGQIEQVLINLAANARDAMENGGTFTIATGLFEDDSLSAFCGPAGSYAVIIVSDNGKG 464 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + +++ + + V S L Sbjct: 465 M-PAEISKRIFEPFFTTKEVGKGTGLGMAIVYGIVQQHRGYITVDSKPGDGTVFSIYLP 522 >gi|332712423|ref|ZP_08432350.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332348897|gb|EGJ28510.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 518 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 K++ +L + + S I H+ +P+ I +S ELL + + Q I Sbjct: 283 RKSLEQEKELSELKSRVISTISHEFRTPMMMIQSSTELLAKYSEKLSEDKRLKHFQQIGW 342 Query: 56 SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + L + Y + + QV S Sbjct: 343 AVEHMNQLLTNVIFLDKTESGELDCHPEYLNLEKLCQKIINNLQVTLSSDYKIDFSTQSN 402 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + +IL N+ A P+GG + V E I +++ +G EK Sbjct: 403 SSQVNLDEQLVGQILTNILSNAVKYSPQGGIIKFDVFCQPEEAILTIRDSGIGIPSKEKQ 462 Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + +L Sbjct: 463 RVFDSFYRATNVGAIKGTGLGLAIAKKCVELHRGKINLDSEVGVGTKFQVILP 515 >gi|329936871|ref|ZP_08286550.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] gi|329303796|gb|EGG47680.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] Length = 477 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 63/216 (29%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +P+ I L+L + G+ ++ I + ++ + L Sbjct: 258 MAADTSHELRTPLATISGWLDLHRQGGVSGPGLETALEHIENEVGRMRLLVEDLSLLARL 317 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDLSRERAKILLNLFMV 125 D+ ++ + + + + + +++ NL Sbjct: 318 DAGRPVEQDPVDLTELAAGVVEDAQIIHPERRVALASAPPALVLGDAGRLQQVVRNLVGN 377 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P V + + + + + +G + +I + Sbjct: 378 AVQHTPARTGVLVEITLDRKDVRLRVVDDGPGIPAQDLP-RIFERFWRAEASRSRAYGGS 436 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + H + + E ++ LL + Sbjct: 437 GLGLAIVEAIVHAHHGHVDVESEVGVGTTVTVLLPR 472 >gi|317509452|ref|ZP_07967070.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974] gi|316252281|gb|EFV11733.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974] Length = 567 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 59/217 (27%), Gaps = 18/217 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--SAIIRLKFMRLAFGYT 74 + H++ +P+ AI EL + + + R+ S ++ + Sbjct: 335 QFVADASHELRTPLTAIRGFAELHRKGVGVSTAVAMSRIESEAIRMGKLVEDLLALARTD 394 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----------RERAKILLNLF 123 + D+ Q++ D + K + ++L NL Sbjct: 395 EQRPLELEPVDMFQLMTDAVHDAKAIAPDREVVFQLQPSGGAPVVLGDEPCLRQVLSNLV 454 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178 A + VT+ + + + ++ G + F + + + Sbjct: 455 SNALSHTGDEASVTLWLGGDAQDVLLEVRDTGPGLSPEDAERIFERFYRVDPSRARSSGG 514 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + L L + Sbjct: 515 SGLGLAIVDAIVRAHGGQASVSSELGAGTTLRVRLPR 551 >gi|262381390|ref|ZP_06074528.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296567|gb|EEY84497.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 563 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 KN +L + A + + H+I +P+ AI EL+ ++E M Sbjct: 325 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 384 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99 + M+ + ++ + + + + + ++ Sbjct: 385 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 444 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + S +++ NL A + G N+ F ++ G Sbjct: 445 EKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYVRDTGIGID 504 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + + S +L Sbjct: 505 KDKLKDVFGRFVKINDYMEGIGLGLAICKGLVVKMGGLIHVTSELGVGSEFSFILP 560 >gi|239909229|ref|YP_002955971.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239799096|dbj|BAH78085.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 482 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 65/232 (28%), Gaps = 22/232 (9%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + L L + + + I H+I +P+G I ++ ELL + +L+ Sbjct: 248 RERLERELQQQEKLAGMGRMVAGIAHEIRNPLGIIRSTAELLLKRAKDADPANARLLSAI 307 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 + K + Y + D+ + + + + Sbjct: 308 FDESKRLSKTVGDFLDYARPKNPRQDEVDLALICDQALTFLEAKCEELGIVVSRDYAPGL 367 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLKINGNLARF 160 + + N+ A ++ + +E ++ G Sbjct: 368 TVRGDKDLLYRAVYNVLSNALDAMAEDKEKVRDPALAVAATRDGDELTLTIADTGPG-FC 426 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 P+ +++D + + V + + L + + ++ Sbjct: 427 PDNKDRVLDPFFTTKDAGTGLGLAIVRTIVESHNAALALDNAPEGGARVTMT 478 >gi|238913751|ref|ZP_04657588.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|228984514|ref|ZP_04144691.1| hypothetical protein bthur0001_12190 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775217|gb|EEM23606.1| hypothetical protein bthur0001_12190 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL +E +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSNTCTEEERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQKLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++PRGG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPRGGDLYFTLVPDHKHIQLYIKDTGIGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|194446308|ref|YP_002043421.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197263097|ref|ZP_03163171.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|194404971|gb|ACF65193.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197241352|gb|EDY23972.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|153004658|ref|YP_001378983.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028231|gb|ABS25999.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 584 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 77/236 (32%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47 + + + L +L L + I H+I +P+ I +L L++ + Sbjct: 337 LRAAQDQLVRNEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLEQGVPDEATRAALI 396 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101 + + L++ + ++ + + + ++ + +A R+Q Sbjct: 397 KHLHLVQRETERCTAIVRNLLDFARERPLAVKDVDVNEVVEEAVLLLANQIRIQGVTLDK 456 Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA 158 + + + +N+ M A ++ RGG++ I D + K G Sbjct: 457 RLGAIPVVSADFGQLRQACVNVIMNAIEAMGRGGRLEIESALVDGGRWVEVAFKDTGPGI 516 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE T+I D + + V + + ++ ++ + Sbjct: 517 -APEHLTKIFDPFFTTKERGTGLGLSVVYGIVERHGGKVDLTSEVGKGTRIAFRIP 571 >gi|299139100|ref|ZP_07032276.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298598780|gb|EFI54942.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 459 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 57/226 (25%), Gaps = 30/226 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--------MSAIIRLKFMRL 69 + + H++ +P+ +I +ELL + G D M + + + Sbjct: 217 FVANVSHELRTPLTSIMGYVELLIDDGNADANMTAQSREFFDAILKNAQRMGRLTEDLLV 276 Query: 70 A-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------KIL 119 +G + ++++ IA + +I + ++L Sbjct: 277 MAKVDSGEQKINPAPVRVAALLQESIAAASGLLKDDARLEIAAMVDTEVMADTDAVVQVL 336 Query: 120 LNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 NL A V + FS++ G E +I + Sbjct: 337 SNLIENALNYGRGAHGSLVVMAAEMVAGPPSMVKFSVRDFGAGI-AFEHRERIFERFYRA 395 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + E L Sbjct: 396 DKARSRESGGTGLGLSIAKHLVESHGGTIWVESDLGRGSRFCFTLP 441 >gi|218259710|ref|ZP_03475337.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii DSM 18315] gi|218224937|gb|EEC97587.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii DSM 18315] Length = 514 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50 K NL A L + + H+I +P+ AI EL+ D Sbjct: 275 RKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMAFADSDEERKGYY 334 Query: 51 QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++I+ +++ + + VD + I+ + ++ + Sbjct: 335 EIIKTNNLLLMQLINDILDLSKIEADAIKISYEPVDINELMDTTFASIKLRMPEGVQLFL 394 Query: 103 SWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +++ NL A + +G F +K G Sbjct: 395 EKGSCTCRFGTDSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKHLKFYVKDTGIGIA 454 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + + E S +L Sbjct: 455 KDKLESLFTRFVKVNDYVEGIGLGLAICQGLVTKMGGSMHVESELGIGSTFSFVLP 510 >gi|205360185|ref|ZP_02835113.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340594|gb|EDZ27358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088603|emb|CBY98362.1| sensor kinase for HydG, hydrogenase 3 activity [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|197124731|ref|YP_002136682.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K] gi|196174580|gb|ACG75553.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K] Length = 686 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 37/249 (14%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43 K + L+ + +V++ L + + H++ +P+ + +L LDE Sbjct: 291 RKQLHARLALADRMVSVGTLAAGVAHELNNPLAYVIANLSYLDEQLTVLAPRVAAAGSSR 350 Query: 44 ---------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 + + F R + G V L V + I Sbjct: 351 EPDLASALLDAVHDARDGAERMRVIVRDLKTFSRPDEEHAGPVPLGPLLDSCVSVAWNEI 410 Query: 95 AVDKRV--QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNEN 147 R+ + ++ LNL + A ++P G ++ + Sbjct: 411 RHRARLLRAPTDVPPIQGCQARLGQVFLNLLVNAAQAIPEGHVDEHQIRVSARALPGGQV 470 Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH 205 + G+ PE +I D + + + + E + Sbjct: 471 AVEVSDTGSGI-APEHLPRIFDPFFTTKPPGVGTGLGLSICQSIVSAMGGEIQVETVLGR 529 Query: 206 NVVLSALLE 214 +L Sbjct: 530 GTTFRVILP 538 >gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 2782 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 72/236 (30%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I + + S + H++ +P+ AI +++L + + + +I+ + Sbjct: 2533 RDITREIEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQINYLTIIKNN 2592 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEK 108 + ++ + +I + + ++ V++ Sbjct: 2593 TNRLRALIEDILEFSRPDSKKKLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPPTL 2652 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164 ++ ++ +I+ NLF A GG +T+ + N ++ G PE+ Sbjct: 2653 PPVTADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGM-SPEQL 2711 Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + + + Sbjct: 2712 KKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIP 2767 >gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UM146] Length = 949 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|195874360|ref|ZP_02701732.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629005|gb|EDX48397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|159029103|emb|CAO90092.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 484 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 63/217 (29%), Gaps = 19/217 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 + H++ +P+ + L+ L + + ++ + I L+ + Sbjct: 262 QFVGNVSHELRTPLTVVIGYLQSLQRRSTNLNPYQQQALETATAETERIIRMLQDLLDLA 321 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNL 122 + + L ++ + + + ++ I ++R ++L+NL Sbjct: 322 RADSGHLHFRSHPIILNTLLTEVAAMSQKVSDRKMTLLLTNEDVVICGDQDRLQQVLINL 381 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTID 177 A V + ++ + + + G F + + + + D Sbjct: 382 LDNAIKYSAPEQPVDLILEKQPSSALIHVCDRGIGISLSHQNRIFERFYRVDESMTRSRD 441 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + R+ + +L Sbjct: 442 GTGLGLAIAKSLIEGMEGRITLRSQPGQGSTFTIILP 478 >gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197] gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] Length = 933 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|70725019|ref|YP_251933.1| signal transduction two-component sensor histidine kinase, VicK [Staphylococcus haemolyticus JCSC1435] gi|123762363|sp|Q4LAJ8|WALK_STAHJ RecName: Full=Sensor protein kinase walK gi|68445743|dbj|BAE03327.1| signal transduction two-component sensor histidine kinase, VicK [Staphylococcus haemolyticus JCSC1435] Length = 608 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + R + I + + Sbjct: 378 FVANVSHELRTPLTSMNSYIEALEEGVWKDDNLAPSFLSVTREETERMIRLVNDLLQLSK 437 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122 + + + + I + S T + ++ N+ Sbjct: 438 MDNESEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPSETIFTEIDPDKMTQVFDNV 497 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 498 ITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 557 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 558 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 596 >gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10] gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1026 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/246 (10%), Positives = 56/246 (22%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L A + + H+I +P+ AI +LEL++ + + + + Sbjct: 501 RKQAEEKLREAREAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQMAAPLRRRL 560 Query: 54 RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97 S+ + D + ++ + Sbjct: 561 GTIMSSSDALLRVINDVLDLSKAESNQMALESIPFDLRRVVNEVAAIFRPLADAKSLVLT 620 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKI 153 R+ + + +++ NL A RGG + ++ Sbjct: 621 CRIAPDLANGYVGDATRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRCVEIAVSD 680 Query: 154 NGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G T + + L + + Sbjct: 681 TGIGIPEDGLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTI 740 Query: 209 LSALLE 214 A L Sbjct: 741 FVAALP 746 >gi|218780686|ref|YP_002432004.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfatibacillum alkenivorans AK-01] gi|218762070|gb|ACL04536.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfatibacillum alkenivorans AK-01] Length = 533 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + L M+ + +L I HD + + I + EL + +++ S Sbjct: 296 QEEQLKLQQMESLGVLAGGIAHDFNNLLSLILGNAELVAVDMAPDDPNKKMLLNACESIE 355 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A + + I + + + D + ++V + Sbjct: 356 HARSLTGRLLTFSSGGAPLQEEINISQLIKQRADSLLAGSNIRVHYNMLPSIFPVSADVV 415 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLARFP 161 + +++ N+ + A ++P GG + IS ++ S G Sbjct: 416 QIGQVVQNIVLNAKEAMPDGGDLKISAENVILEENNLLTLPPGAYVRISFSDTGPGISL- 474 Query: 162 EKFTQIVDGNVESTIDSH----DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I + + + + + ++ L E + V +L Sbjct: 475 ENRSRIFEPYFSTKTRGTQKGMGLGLATCLSIIKKHGGALSVESNPEKGAVFHVILP 531 >gi|57235028|ref|YP_180886.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] gi|57225476|gb|AAW40533.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] Length = 581 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 61/234 (26%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57 + +++ + + I H++ +PI ++ E L E D + + Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPISSLKLLTETLQEGAASDAAVAAGFIEKIHL 405 Query: 58 ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106 + G + ++ + V Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDISTAIKLAAARLSPQAERAGISLGVELPE 465 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++L+NL A P+GG++ I + + + +G + Sbjct: 466 TLPQVKLDENRIEQVLVNLVHNAIKFTPKGGRIKIGARTQGQILVVYVSDSGIGIPEDDL 525 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + E S L Sbjct: 526 TRVFERFYKVDKARSGGGTGLGLAISKHIVQAHGGNIWAESRYGKGATFSFSLP 579 >gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1333 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 75/241 (31%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQ 51 +A+ ++ A S + H++ +P+ ++ LL E ++ ++ Sbjct: 932 LAQEQSARNAAE--AANHAKDEFLSILSHELRNPLNSMLGWANLLRTHQLEEVTVNQGLE 989 Query: 52 LIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I S+ + + +R+ + + + ++ + + Sbjct: 990 AIERSAQAQNHLISDLLDVSRISSGRLRMDAQEVELIPVIEAAIAVVRLAAEAKNIQIET 1049 Query: 101 QVSWTGEKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 ++ T + +++ NL A P G++ ++++ + + +K G + Sbjct: 1050 KLDPTHTPMLGDPIRLQQVIWNLLSNAIKFTPTKGRIDVTLEYTYFQAQIQVKDTGAGIK 1109 Query: 160 FPE---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALL 213 F + + T + V L + + E + + L Sbjct: 1110 ADFLPYVFERFRQADGTRTRSNQGLGLGLSIVRHLVELHGGTVEVESQGEGQGSTFTIKL 1169 Query: 214 E 214 Sbjct: 1170 P 1170 >gi|253575389|ref|ZP_04852727.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845386|gb|EES73396.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 457 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 62/224 (27%), Gaps = 19/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK-- 65 L L + I H++ +P+ I + +E + + +++ + + + Sbjct: 230 QQDQLRKNLTADIAHELRTPLATIQSHIEAFQDGVWEATPDKLEVCHGQVIRLVKLIHDL 289 Query: 66 ---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 ++L ++ + + +D +Q + Sbjct: 290 ENLSAVENPMLKLKQEPVRLLEVIRESKKTVKAQFSEKPIDLTIQEETPVVITGDAGRLI 349 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 ++ +NL A+ G + + ++ G+ E F + G+ Sbjct: 350 QVFVNLLNNAYKFTGEGSIYVRIFEAADQ-VNVTVSDTGSGIASDELPHIFERFYRGDKS 408 Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + + K Sbjct: 409 RNRKTGGAGIGLVIVKAIVEAHGGSIHVESKINQGTQFTLHFPK 452 >gi|239831142|ref|ZP_04679471.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG 3301] gi|239823409|gb|EEQ94977.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG 3301] Length = 430 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 66/240 (27%), Gaps = 30/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++ + + + + H++ +P+ ++ +E L + D + +++ + Sbjct: 191 QSETRRID--RMRSDFIANASHELRTPLASLRGFIETLQGPARNDAAARDRFLDIMQKQA 248 Query: 58 MSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + +RV Sbjct: 249 ERMSRLIDDLLSLSRLEMRAHLTVNECVDMTSILNHVADTLAPLAAGLDINIERVLPDHP 308 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFP 161 E ++ NL A G +V + + + E + S++ G Sbjct: 309 VMVTGARDELIQVFQNLVENACKYGQAGKRVIVKLDEDDSGSSPEVVASIQDFGPGI-AA 367 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + + V + ++ RL+ + L K Sbjct: 368 EHLPRLTERFYRIDVETSRAQKGTGLGLAIVKHILARHRGRLVVRSQLGEGSTFTVRLPK 427 >gi|200387245|ref|ZP_03213857.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604343|gb|EDZ02888.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|188581879|ref|YP_001925324.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179345377|gb|ACB80789.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 906 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + + MD V L I HD + + AI +LL + + I+ + Sbjct: 475 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 533 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + A ++ + ++ +G+ + + +V Sbjct: 534 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 593 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157 + ++++NL + A ++P GG +TI + + + + G Sbjct: 594 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVAGERPVGIPAGDHVMIEVTDTGEG 653 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + + + V + +++ + + L + Sbjct: 654 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 712 >gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 867 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 18/227 (7%), Positives = 55/227 (24%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59 L + L + + + H+I +P+ AI +LL + + ++ I ++ Sbjct: 636 RDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLEGFSSEEVQQFVETININCTL 695 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107 + + S + + + + ++ + Sbjct: 696 LLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDSQRLSMPQGVELRTDFPEGTGKS 755 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I S +++ NL A +G + + + ++ G+ Sbjct: 756 MITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVEDSGHTVIFVEDTGSGISDENLGHIF 815 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + Sbjct: 816 ERFYKADNFTQGAGLGLSICQTIVERLNGTITVTSKLGKGTRFEVRI 862 >gi|194449893|ref|YP_002048158.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359439|ref|ZP_02670061.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194408197|gb|ACF68416.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336113|gb|EDZ22877.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|301052978|ref|YP_003791189.1| sporulation kinase B [Bacillus anthracis CI] gi|300375147|gb|ADK04051.1| sporulation kinase B [Bacillus cereus biovar anthracis str. CI] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALALITPLANLTNVRTHYIKQSTSFFITG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|229588671|ref|YP_002870790.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229360537|emb|CAY47394.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 589 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 60/206 (29%), Gaps = 13/206 (6%) Query: 21 RICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + H+I +P+G I + +LL + ++ + + Sbjct: 373 GLAHEIRNPLGIIKTATQLLHRRADLADTDKRHLEYVISEVSRINDLITEFLDFAKPNPP 432 Query: 77 VDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128 + L + + I F + + + + ++ A Sbjct: 433 LRVLQPARPLVEEILGFCAPELATHNIDAHIDDQAPGATIYADAKQLKQACLNLIINAID 492 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG++T+ ++ + + S+ G + +I V + + V Sbjct: 493 AMPEGGRLTLGIRTLDDTTVISIADTGQGI-PADMIERIFTPFVTTKASGTGLGLAKVYS 551 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D S + Sbjct: 552 IMESHDGSIECASEKDAGATFSLYIP 577 >gi|194471314|ref|ZP_03077298.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358832|ref|ZP_02659463.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457678|gb|EDX46517.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331651|gb|EDZ18415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +T+ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|251797174|ref|YP_003011905.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247544800|gb|ACT01819.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 549 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 12/224 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K F L S L V L + + H+I +P+ + L+L + L+R Sbjct: 316 KKAEEFLLQSEKLSIVGELAAGVAHEIRNPLTTLKGFLQLYKIENPTMKYGDLLRDELER 375 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE 114 I + ++ ++ + D+ + + + + G+ ++ Sbjct: 376 IEIITSELLTMAKPQAAMYVVVNVKDVIEQTLEFLTPQTLLNNIEFIREYEGDYFPVTCA 435 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDG 170 + ++ + ++ + + + ++ G E ++ Sbjct: 436 KHQLKQVFLNLLKNAIESMSNGGEIHISIQLDAAGECLIFIQDQGCGI-PEEHLHRLGQP 494 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R++ + D + L Sbjct: 495 FYSLKEKGTGLGLMISHKIIKQYHGRIVYDSKVDIGTRIEIRLP 538 >gi|47566227|ref|ZP_00237255.1| sporulation kinase [Bacillus cereus G9241] gi|47556780|gb|EAL15111.1| sporulation kinase [Bacillus cereus G9241] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL +E +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSNTCTEEERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEREQKLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++PRGG + ++ + +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPRGGDLYFTLVPNHKHIQLYIKDTGIGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|330880371|gb|EGH14520.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 586 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 347 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 406 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 407 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 466 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 467 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 525 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 526 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 577 >gi|229075093|ref|ZP_04208094.1| hypothetical protein bcere0024_24060 [Bacillus cereus Rock4-18] gi|228708024|gb|EEL60196.1| hypothetical protein bcere0024_24060 [Bacillus cereus Rock4-18] Length = 433 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++ + M++V+ L + I H++ +P+ + +LL DE ++ I Sbjct: 208 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLSPESRDEYIEHILEELN 267 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSR 113 A + I + ++ + ++ I ++ Sbjct: 268 RAQEIIDDYLTFAKPAPEKLDHISIDQELNRAINMILPLCNMNTIHITKDFSKATIVGNK 327 Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + NL + ++P GG + IS S N+ I ++ +G E+ + + Sbjct: 328 QHFQQCFLNLIKNSIEAMPNGGTLNISSTISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 386 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + L + L+ K Sbjct: 387 STKSKGTGLGTMVAVKIIETMHGNLKIQSTVSKGTALTITFPK 429 >gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 558 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 56/227 (24%), Gaps = 22/227 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 + L + + + H++ +P+ +I ELL + + + Sbjct: 321 ENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPINEEQQENLMDIKTSAQQLMLL 380 Query: 66 -------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +RL D + I V V Sbjct: 381 INDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAYQNGVRLDVSAVDLPLVYGDP 440 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169 ++L NL A GG V I + S++ NG+ P F + Sbjct: 441 ERLRQMLSNLIANAVKHSKEGGYVHIYAKADNEFAAISVEDNGDGIPPELMPHIFEKFRQ 500 Query: 170 GNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + V LA + + + Sbjct: 501 GEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGEGTTFTIHIP 547 >gi|186681657|ref|YP_001864853.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464109|gb|ACC79910.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 572 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 +AK N+ + + + + H+ +P+ +I + L + + + +I Sbjct: 330 LAKEKQLNVFK----SQIIATVSHEYRTPLTSILAAASTLAKHNQQLDESKQQRFLGIIE 385 Query: 55 LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + +D L D+ + + + TG Sbjct: 386 QKARYMSKLVDNMLLVNQFELEKPKFKPIPLDLLQFFADLIEQERETTGDRHELIFQITG 445 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 +R +I +NL A P GG V + ++E IF ++ G + Sbjct: 446 HTQGFWGDRGLLQQIFINLMSNAIKYSPDGGTVEFHLIGKESEVIFYIQDRGIGIPIKDQ 505 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F G+ TI + + + ++ L K Sbjct: 506 ENLFQSFCRGSNVDTIPGTGLGLAIAKGCVELHGGDITLFSEVGQGTKVTVSLPK 560 >gi|302036059|ref|YP_003796381.1| hypothetical protein NIDE0686 [Candidatus Nitrospira defluvii] gi|300604123|emb|CBK40455.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 922 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 + + L AL + S I HD + + I ELL + E +Q Sbjct: 533 LKTTQQQMVQQERLRALGQMASGIAHDFNNTLSPIMGFSELLLIAPQMASDPAQLKEYLQ 592 Query: 52 LIRLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVD-------- 97 I +++ A + +R + G VD + ++ + Sbjct: 593 TINMAAKDAAKVVSRLRDFYRPRLDADLAGIVDLNSLVQQSVKLSQPKWKDQALANGVAI 652 Query: 98 -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + ++ E ++L NL A ++P+ G +T+ + + + G Sbjct: 653 EIKTELEPVPSVAGHESELREVLTNLVFNAVDAMPKSGSITLRTKVDGDAVRLEVSDTGT 712 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + S L Sbjct: 713 GMTEEVRQRCLEPFFSTKGEKGSGLGLAMVYGIIRRLRGTIDITSAVGVGTTFSIRLP 770 >gi|296185431|ref|ZP_06853841.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|296050265|gb|EFG89689.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 566 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 63/222 (28%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 ++ + + H++ +P+ +I E L V + + + + A + + Sbjct: 344 ENMRTQFVANVSHELKTPLTSIKGFAETLRYVDDFKNKEKFLNIINDEADRLTRLINDTL 403 Query: 72 GYTG----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAKI 118 + +D + D+ ++++ ++ + + + ++ Sbjct: 404 TLSHIESSIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDKVPNLKGDNDRFKQM 463 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 L+NL A G V I + + I ++ G E +I + Sbjct: 464 LINLVDNAIKYSDNNGIVKIGTKLENDNCIIWVEDKGVGI-SKEHIDRIFERFYRVDKAR 522 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + Sbjct: 523 SRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 564 >gi|289651030|ref|ZP_06482373.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str. 2250] gi|330987745|gb|EGH85848.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 982 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4] gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4] Length = 464 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 62/221 (28%), Gaps = 26/221 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL-AFGY 73 + I H++ +P+ + ++L E ++ +++I + + + A Sbjct: 242 ANISHELRTPMTYLKGYSKVLREGRWKTEEERNQYLEIIDHEATRLTYLVDDLFDLAQME 301 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRERAKIL 119 G + +I ++I+ + + + ++L Sbjct: 302 EGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYRGGLSDKDDSIVLGDPLRLEQVL 361 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVES 174 +NL A G +V + ++ G E F + + Sbjct: 362 INLVENAIKYTKEGSITIYTVSN-DENIKIKVRDTGIGMEEEELPYIFERFYRVEKSRSR 420 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + E + +L K Sbjct: 421 AFGGTGLGLSIVKQLIELHNGTIEVESTVGEGTEFTIILPK 461 >gi|283781072|ref|YP_003371827.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula staleyi DSM 6068] gi|283439525|gb|ADB17967.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula staleyi DSM 6068] Length = 461 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 55/226 (24%), Gaps = 22/226 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL-- 64 +L L + + H++ +P+ AI E L + I + I + + Sbjct: 230 ENLRRELVANVSHELKTPLAAIKAYAETLRLGAVNDPEINLTFVHRIEEQAERLHELILD 289 Query: 65 ----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + L + + + Sbjct: 290 ILQIARVEAGQEAFEICDVPLHELIEECLAQFADLAQSKRVELIGPPIDQEIFVRGDEEG 349 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 IL NL A P G+VT+ + + ++ G + F + + Sbjct: 350 VRTILNNLVDNAIKYTPADGRVTVRCTIETSAVMLEVQDTGIGIAEKDQARVFERFYRVD 409 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V L+ + + L + Sbjct: 410 KARSREMGGTGLGLSIVKHLSQALGGSVGLDSTIGKGSTFRVHLPR 455 >gi|255525673|ref|ZP_05392606.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|255510659|gb|EET86966.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] Length = 561 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 63/222 (28%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 ++ + + H++ +P+ +I E L V + + + + A + + Sbjct: 339 ENMRTQFVANVSHELKTPLTSIKGFAETLRYVDDFKNKEKFLNIINDEADRLTRLINDTL 398 Query: 72 GYTG----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAKI 118 + +D + D+ ++++ ++ + + + ++ Sbjct: 399 TLSHIESSIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDKVPNLKGDNDRFKQM 458 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 L+NL A G V I + + I ++ G E +I + Sbjct: 459 LINLVDNAIKYSDNNGIVKIGTKLENDNCIIWVEDKGVGI-SKEHIDRIFERFYRVDKAR 517 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + Sbjct: 518 SRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 559 >gi|117168588|gb|ABK32253.1| Amb5 [Sorangium cellulosum] Length = 508 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+++ + A L + HD+ +P+ A+ S+ +LD V + + L Sbjct: 262 MAESLERQREAQ--FAFL-GGVAHDLRNPLSALRMSVHVLDLDSLPPASSVRRTMALVGR 318 Query: 59 SAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107 + + + ++ + D+ + ++ + + + V E Sbjct: 319 QVDRLERMVGDLLDASQIEACKLELRVEERDLRDLAQEAVDLYRPVSPEHPIELSLPETP 378 Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A++L NL A P GG++ ++V+ + +++ G E Sbjct: 379 VLVPCDATRIAQVLNNLLSNALKYSPAGGQIDVAVRAGGDGAEIAIRDRGLGIEPAEL-A 437 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +I + + + RLL E V L + Sbjct: 438 HLFEPFRRLKSSSGSIPGTGLGLTVAKRIVEAHGGRLLVESRPGAGSVFRIDLPR 492 >gi|116255423|ref|YP_771256.1| putative transmembrane two-component sensor histidine kinase transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260071|emb|CAK03170.1| putative transmembrane two-component sensor histidine kinase transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 626 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQL-------- 52 +L+ L S I H++ P+ AI N+ E LL + E++Q Sbjct: 388 EAVHLNQSATAGALSSSIAHELNQPLSAIRNNAEAASVLLRSEKPDHELIQQILLDIQED 447 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----E 107 + + ++ L + I A + ++++ T Sbjct: 448 DQRAGDIISRMRGLLKKRNEIDWQEFDLNDVTSSAIHIIHGEAERRGIKLTSTQLPGKLP 507 Query: 108 KIDLSRERAKILLNLFMV----AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++LNL +LP G +T + + + + G+ E+ Sbjct: 508 VRADKVHVQQVILNLATNAMDSMLDALPAGRTLTFATGLANEKVELRVSDTGDGI-PKER 566 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + V L Sbjct: 567 LNSIFEPFYTTKQAGTGLGLSIARAIVETYGGTICADNRPEGGAVFRVALP 617 >gi|91201643|emb|CAJ74703.1| hypothetical protein kuste3940 [Candidatus Kuenenia stuttgartiensis] Length = 637 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 64/230 (27%), Gaps = 22/230 (9%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII 62 + S L A+ L + H++ +P+ I EL L++ ++ ++ ++ Sbjct: 404 NQVVQSERLFAVSNLVAGAAHELNNPLAGIQLCTELVLNDPATSEKSLKYLQRIQKETEQ 463 Query: 63 RL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + + + Sbjct: 464 IQDVVKSLLTFTGNYTLSKEQININEIIEVIIKQKIYQFDHANIKIIILPGDVLPFVFVD 523 Query: 112 SRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++LLN+ A A++ +TI + N + G E ++I Sbjct: 524 KYQIRRVLLNIIENACAAMEVSAYDKCLTIKTEAQNNVVKTYISDTGPGI-PKENLSKIF 582 Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ ++ + L Sbjct: 583 EPFYTNRANKKKKGTGLGLSIAHSIIKQHNGKIYVQSEVGKGTTFVIELP 632 >gi|71735260|ref|YP_273139.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555813|gb|AAZ35024.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 982 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] Length = 953 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 75/240 (31%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + + + + + H++ +P+ I +L+LL G+ V +L+ Sbjct: 456 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQGLPQGVDRLVTAM 515 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + I + Sbjct: 516 NNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLVVKKRLGLYCFI 575 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ N+ A G + ++V+ N F ++ G Sbjct: 576 EHNVPLSFNGDPVRLQQVISNILNNAIKFTDT-GCIVLNVRTCGNYLEFQVRDTGVGIPE 634 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + E + + Sbjct: 635 REIT-RLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEPGLGSSFTVRIP 693 >gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 375 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 63/233 (27%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + ++ ++ + + H+I +P+ AI ELL + + + +++ ++ Sbjct: 142 LRQAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASASSEEEKAQFLGIVQNNN 201 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + F + L ++ +V Sbjct: 202 EMLQQLIADILDLSKIEAGTLEFVFSDIDINQLMSDLEQQFRMRLKEQGSAVQVIRETPP 261 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E + +R +++ N A G + F +K G+ + Sbjct: 262 EGCVMHMDRNRLAQVIANFMTNAMKFTDEGSITLGYRTNEDGF-YFYVKDTGSGIPKEKL 320 Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T E + + + ++ + L + Sbjct: 321 PTIFDRFVKLEQEKKGTGLGLSICQTIVSKLGGKIGVDSEVGKGSTFWFTLPR 373 >gi|311030784|ref|ZP_07708874.1| two-component sensor histidine kinase [Bacillus sp. m3-13] Length = 469 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/222 (9%), Positives = 63/222 (28%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 +N+ M+ V+ + + + H++ +P+ I ++L + I Sbjct: 242 ENLLVYKQQMESVSQISAGMAHELRNPLSVIKGFIQLSQITNNWSKYYDTIMAEINRMNS 301 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------R 115 ++ + + ++ F + + + E ++ + Sbjct: 302 IIEDFLSVSRKKVKKQLIEPQYIFQSLVYIFQSECLLHNIDFDFEIEEVDEQVLVNEAMI 361 Query: 116 AKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++LN A + K + + S ++ NG + +I Sbjct: 362 KQVMLNFLRNAIEAFSPEQKNKLFLLRAKKSDTFYEITVVDNGKGM-AEDVLDRIGKPFF 420 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ L + L Sbjct: 421 TTKEKGNGLGIPLCKKIIEDHDGELFIDSKLGEGSTFCYRLP 462 >gi|284034896|ref|YP_003384827.1| histidine kinase [Kribbella flavida DSM 17836] gi|283814189|gb|ADB36028.1| histidine kinase [Kribbella flavida DSM 17836] Length = 618 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 27/235 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVG 44 MA++I + + S + H++ +P+ I L LL+E G Sbjct: 388 MAESIQQHDHQRKA---MVSDVAHELRTPLANIKGYLVASEDGVVPLDRELVTSLLEETG 444 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + +L+ A+ +RL + + + + V Sbjct: 445 L---LERLVADLQDLALADAGMLRLHPAPRDLAELAGQVVAAHRPAAEAAGVRVSAAADS 501 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161 I S + L NL A P GG V + V+ ++ + ++ NG+ P Sbjct: 502 PAPAIVDSARIRQALGNLVSNAIRFTPAGGHVVVGVRRDGDDYLLTVSDNGSGIDAEHLP 561 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + L + + + L Sbjct: 562 HLFDRFYRAEHSRSRATGGSGLGLAITKHLVEAHHGTITVTSHPGDGSTFTIRLP 616 >gi|300021836|ref|YP_003754447.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299523657|gb|ADJ22126.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 428 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 59/240 (24%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 + ++++ + H++ +P+ ++ +E L + D ++++ + Sbjct: 188 DESEQHRALEMRTDFVANASHELRTPLASVRGFIETLQGPARNDEVAHDRFLKIMAEQAE 247 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK- 108 + + L + + + V Sbjct: 248 RMTRLIDDLLLLSRVEEKANLNPTGQVRLSELLNEVVRALTPVSEERQITITVEPESSPL 307 Query: 109 --IDLSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 E ++ NL A + SK ++ +G P Sbjct: 308 VAKGERDELFQVFHNLIENAVKYGRVGGSVKVHLRESERDPSKKRVAVTVTDDGPGI-AP 366 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + I + + ++ L + + L K Sbjct: 367 EHLPRLTERFYRVSTEHSRRIGGTGLGLAIAKHILTRHQGELSVDSVVGRGTTFKVSLPK 426 >gi|229012419|ref|ZP_04169594.1| hypothetical protein bmyco0001_28630 [Bacillus mycoides DSM 2048] gi|228748778|gb|EEL98628.1| hypothetical protein bmyco0001_28630 [Bacillus mycoides DSM 2048] Length = 801 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNRGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 +G + + + + ++++ +T + + Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDIGVLMDQVLTLLQPQAMMNNIQIRIDFTPDIPLIPC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ + N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPTGGEILIQFDKLDHNQIRIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESDVNKGTIVEVTLP 795 >gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Citrobacter koseri ATCC BAA-895] gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895] Length = 948 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + VQ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCDGDYLSIQVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|54301740|ref|YP_131733.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum SS9] gi|46915160|emb|CAG21933.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum SS9] Length = 971 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 59/243 (24%), Gaps = 32/243 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + L + + + + H+I +P+ + +LL + + E + Sbjct: 389 TQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKTDLTQEQRHHLLTLL 448 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQ 101 S + + ++ L I D + + Sbjct: 449 DSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKGLDFSIQCH 508 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 +IL N+ A +G + + I + + G Sbjct: 509 FDSNSWFFADKSRIRQILFNVINNAIKFTDKGEVRVSLNQGQCDNPKERKLIITAQDTGI 568 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 ++ QI D + V LA+ + E + Sbjct: 569 GI-AEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVRQLANLMNGDIQLESAYGKGSTFT 627 Query: 211 ALL 213 L Sbjct: 628 ITL 630 >gi|325284510|ref|YP_004257049.1| integral membrane sensor signal transduction histidine kinase [Deinococcus proteolyticus MRP] gi|324316684|gb|ADY27795.1| integral membrane sensor signal transduction histidine kinase [Deinococcus proteolyticus MRP] Length = 365 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 53/214 (24%), Gaps = 17/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SSMSAIIRL-------K 65 L + H++ +P+ A+ + + + + E Sbjct: 148 LIGNVAHELRAPLAALQGYADAMQDGVMTSEHAARAISREVGAMDRLVRDLSLVSKVEAG 207 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 M L + L + + V V+V+ ++L NL Sbjct: 208 KMELYSITMSPQELLEAAQERFMPFFEDKGVTLVVEVAPLPLLWADKERSLQVLANLLSN 267 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTIDSHD 180 A P G+VT++ + F + G+ P F + Sbjct: 268 ALRHTPPRGQVTVTAKTQGRAVRFMVADTGSGISGEHLPRIFERFYRADPARSRGEGGSG 327 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + L Sbjct: 328 VGLTISRGLVEAMGGEIEVDSTPGKGSTFAFTLP 361 >gi|307822986|ref|ZP_07653216.1| osmosensitive K channel signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307735761|gb|EFO06608.1| osmosensitive K channel signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 914 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 58/232 (25%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + S L L S I HD+ +P+ +I + L E + LS Sbjct: 667 AQQTQLRMESETLRNSLLSAISHDLRTPLASIVGAASTLVEEDAQLAPPDRQELSLTIYD 726 Query: 62 ----------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 +D +IG V Sbjct: 727 EALRMSNLTNNILDMARLDAGQASLNRQWYPLDEIIGGTLTRMHKRLEGRVINTKLPDDL 786 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + ++L+N+ A P G + I + S + ++ G E Sbjct: 787 CLVRVDAVLIEQVLVNILENACKYTPTGSPIDIIAEISAHMLKVTVADRGPGIPPGEEEK 846 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + E T + + + + LL Sbjct: 847 LFDKFYRVHREGTQSGVGLGLAICKAIIIAHGGVIGAANRLGGGAQFFFLLP 898 >gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 768 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + K + + + + + H+I +P+ AI ELL ++ I Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589 Query: 60 AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + D L I + + + +++ Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649 Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A + + K S+ G ++ Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 N + ++ + E + L Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761 >gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 757 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + K + + + + + H+I +P+ AI ELL ++ I Sbjct: 519 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 578 Query: 60 AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + D L I + + + +++ Sbjct: 579 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 638 Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A + + K S+ G ++ Sbjct: 639 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 698 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 N + ++ + E + L Sbjct: 699 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 750 >gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 768 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + K + + + + + H+I +P+ AI ELL ++ I Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589 Query: 60 AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + D L I + + + +++ Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649 Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A + + K S+ G ++ Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 N + ++ + E + L Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761 >gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 768 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + K + + + + + H+I +P+ AI ELL ++ I Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589 Query: 60 AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + D L I + + + +++ Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649 Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A + + K S+ G ++ Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 N + ++ + E + L Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761 >gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 768 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + K + + + + + H+I +P+ AI ELL ++ I Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589 Query: 60 AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + D L I + + + +++ Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649 Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A + + K S+ G ++ Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 N + ++ + E + L Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761 >gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 768 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + K + + + + + H+I +P+ AI ELL ++ I Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589 Query: 60 AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + D L I + + + +++ Sbjct: 590 NSDLLLKLINDILDLSRIKSGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649 Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A + + K S+ G ++ Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 N + ++ + E + L Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761 >gi|147676435|ref|YP_001210650.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146272532|dbj|BAF58281.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 356 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 63/224 (28%), Gaps = 17/224 (7%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLS 56 + L+ + I H I +P+ A+ ++++ E ++ + Sbjct: 124 IRNEKIKLIKQMSIGIAHHIRNPLTAVRGFIQIMREKSGGDCVTGFNEFTSIALKELDRV 183 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLS 112 + L + +V+ L ++ I+ A+ + V Sbjct: 184 NEVIGNLLLLADSSELKREAVNVNNLLKNVLFFIKGKAALSGIIVVEELSPDLPSVFVNQ 243 Query: 113 RERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + +L N+ A +P K+ ++++ + G +I + Sbjct: 244 VQIVHVLFNILDNAIKFMPDGGRLKLRSYTVPAESKVCIEVSDTGAGIPPANIN-KIFNP 302 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + H++ + + L Sbjct: 303 FFTTREDGMGFGLALANKIIHDHGGEIRVGSEEGKGSTFFVYLP 346 >gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 720 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 53/239 (22%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ 51 K + L L + + I H+I +P+ AI LL E GI +E + Sbjct: 474 RKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGISEEKQE 533 Query: 52 LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--- 97 I + + + +D ++E Sbjct: 534 YINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFRLRNKKSGIC 593 Query: 98 -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + ++++NL A G F + G Sbjct: 594 ICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGC 653 Query: 157 LARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + ++ L Sbjct: 654 GIPEERLEEIFGNFVKLNSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712 >gi|319938298|ref|ZP_08012695.1| sensor protein [Coprobacillus sp. 29_1] gi|319806591|gb|EFW03249.1| sensor protein [Coprobacillus sp. 29_1] Length = 464 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+ + + S + H+ +P+ AI +L + Q + Sbjct: 215 MAQQLA---KQEETRQQFISDVSHEFQTPLTAIQGFATILKNEELPLVQRQKYADIILFH 271 Query: 61 IIRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 RL + +D IE ++ + ++ Sbjct: 272 SKRLSTLSKNMLQLTILDGEDVKLETSEFSLIEQLSRVIETQDNLALSKNIEIEFQLPKN 331 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 I + + ++ +NL A G VTISV+ S E +++ G Sbjct: 332 DIRIEADESRLEQVWINLVNNAIKYTNENGVVTISVKKSSKEVEVTIEDTGVGMSKEAIS 391 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + +I+ + + V + ++ + + +D L Sbjct: 392 HIFERFYRQDKSRSIEGNGLGLSIVKRIIDLHRGTIDVKSREDGGSKFIIRLP 444 >gi|260427270|ref|ZP_05781249.1| histidine kinase [Citreicella sp. SE45] gi|260421762|gb|EEX15013.1| histidine kinase [Citreicella sp. SE45] Length = 637 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---L 55 +A + + AL L + + H++ +P+ + +L + I D+V + + Sbjct: 261 LAAQREQIFQAEKMSALGELLAGVAHELNNPLSVVVGHALMLRDEEISDDVRRRVEKISD 320 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ +K + + ++ + + V + + + Sbjct: 321 AAERCARIVKSFLAMARQQPTRLVPTDIAETVLMAVDALRNGADGLGAEVDLQIAPDLPN 380 Query: 111 LSRERAKILLNLFMVAHAS--------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + + + + +S + NG E Sbjct: 381 VRGDAHQLSQLVINLVTNADQAIRDSGTGDTIGIALSHDAGAQMVELRVTDNGPGI-PQE 439 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I D + I +A + R+ L L Sbjct: 440 IRSRIFDPLFTTKPVGSGTGIGLALCHRIATAHAGRIALAETSGPGTTLVVRLP 493 >gi|294678067|ref|YP_003578682.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294476887|gb|ADE86275.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] Length = 877 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 15/227 (6%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLI 53 ++ + ++ V L I HD + + I +L +L + + Sbjct: 526 TQSQLLHAQKLETVGQLTGGIAHDFNNILAVIIGNLNILARELVETPALKARAERGLSAA 585 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ L F R +VD + + +++ + R+ + + Sbjct: 586 NRAAGLINRLLTFSRRQRLAPENVDLNGLVRGMLDLMQSSLGSGMRITPDLAADLPRVRV 645 Query: 114 ERAKILLNLFM---VAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ L A ++ I+ + + ++ G P+ Q+ + Sbjct: 646 DPGQLENALMNLAVNARDAMEGAGEITVITRRAADGFVELAVADTGAGI-PPDLLEQVFE 704 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V ++ + E +S L Sbjct: 705 PFFTTKPVGKGSGLGLSMVYGFVRQSGGTVTIESAPGAGTRVSLRLP 751 >gi|317128931|ref|YP_004095213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315473879|gb|ADU30482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 1071 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 74/224 (33%), Gaps = 11/224 (4%) Query: 2 AKNICFNLSSMD--LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K + +V+ L + H+I +P+ I ++LL I+ + +I Sbjct: 838 RKTEELLQKNHKQVVVSELAAGFAHEIRNPLTTIKGFIQLLKNKTIKQKYYDIIIQEFEH 897 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111 + +V + + +E+ + +++ Sbjct: 898 VESITRDFISLTKPKSNVMLHANVNQVLFNLENSFSKLAKIRNITLTIEVADNVSTIYCD 957 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++L++L + +L GGK+ + V + +F++ NG E+ ++ + Sbjct: 958 IEQIKRVLIHLIQNSFDALQNGGKILLQVIEDNTFTVFTVIDNGVGM-SQERVQKLGEPY 1016 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + E+ + + ++ + + K Sbjct: 1017 FSIKEKGIGLGLMLCYQIIREHNGTINVKSKENVGTNVEIKIPK 1060 >gi|269968582|ref|ZP_06182584.1| sensor histidine kinase [Vibrio alginolyticus 40B] gi|269826793|gb|EEZ81125.1| sensor histidine kinase [Vibrio alginolyticus 40B] Length = 679 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 + + + L AL L + I H+I +P I ++EL+ D+ E + I Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEIDAI 492 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + V+ + Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159 +IL+NL M A ++ G + + G Sbjct: 553 HTSVEINRHHLLQILVNLQMNAIHAMSGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 611 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++I + + + + + L E S L K Sbjct: 612 KPENLSRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGTGSKFSIYLPK 667 >gi|149189433|ref|ZP_01867718.1| signal transduction histidine kinase [Vibrio shilonii AK1] gi|148836791|gb|EDL53743.1| signal transduction histidine kinase [Vibrio shilonii AK1] Length = 674 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 65/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + + +++ L AL L + I H+I +P I ++EL+ +V +E + +I Sbjct: 430 LNQTRNKLVTNEKLAALGELTAGIAHEINNPTAVILGNVELMRFELGSDVSRVEEEIDVI 489 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + G D + + ++ + Sbjct: 490 LAQIDRIRNITRSLLQYSRQGGVQDEVTWQHVNPIVDESVTLVRTGAKKRDVEFIVDLNA 549 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI--------FSLKINGNLAR 159 K + R ++L L + ++ +++ + G Sbjct: 550 KTPVEVNRHQLLQILVNLQMNAIHAMQGKGRLTVLTEDWVEAGQSIGSLIHVIDEGCGIS 609 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + D + + + + + + L Sbjct: 610 DANIK-RIFDPFFTTKRDGTGLGLSVSQSILSQTGGEIRVKSKLGEGSQFTLYLP 663 >gi|197121353|ref|YP_002133304.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196171202|gb|ACG72175.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 530 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 61/221 (27%), Gaps = 19/221 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKF 66 +L + L S + HD+ +P+ AI + LL + G+ D ++ + + Sbjct: 288 EELRSGLLSSVSHDLRTPLAAITGAATLLLDDGVNDPAIRRDLAATVVDEAERLERLVSN 347 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RA 116 + G + ++ + + E Sbjct: 348 LLDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAGRPVAVAIPDELPLLSVDPILVQ 407 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-- 174 ++ +NL A P G ++ + + G E+ +I + + Sbjct: 408 QLFVNLLENATKHTPPGSEIAVRAVREGGTVAIEVADRGPGLPEGEE-ERIFERFQRAAR 466 Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + RL V L Sbjct: 467 PGVRGVGLGLPIARAIAQAHGGRLTAANRASGGAVFRLTLP 507 >gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 607 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 18/237 (7%), Positives = 74/237 (31%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55 + +++ ++ + + H++ +P+ I + E L + + +Q++ Sbjct: 360 LLQDVTSAQKLENMRKEFVANVSHELKTPLTTIKSYTETLLDGVLENTELATSFLQVVDG 419 Query: 56 SSMSAIIRLKFMRL--------AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTG 106 + ++ + + V+ + I ++ + + Sbjct: 420 EAERMARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNKAQEIITHLQD 479 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E + + ++ +++LN+ + P GG++ + + + ++ G + Sbjct: 480 EPVHIYADKDRIEQVILNILSNSIKYTPEGGRIIVDLIVDEGVVTLKIRDTGIGIPKEDI 539 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + ++ + + H + L Sbjct: 540 -ARIFERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGTEVHTKLP 595 >gi|42782720|ref|NP_979967.1| sporulation kinase A [Bacillus cereus ATCC 10987] gi|42738646|gb|AAS42575.1| sporulation kinase A [Bacillus cereus ATCC 10987] Length = 510 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + V+ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500 >gi|108763401|ref|YP_634188.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108467281|gb|ABF92466.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 485 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 MA+ + + L + + HD+ +P+ A+ S ++L + + I Sbjct: 254 MAETVASQ-DARQL--QFLAGVAHDLRTPLNALKLSAQMLLRAKTAPPPEKVRDSLVRIS 310 Query: 55 LSSMSAIIRLKFMRLAFGYT----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + +L+ + Sbjct: 311 NQVDRLERMVGDLLDRTRIEAGNLELRLEECDLRALVEEVVELHRPSSEHHRLEYSVPDS 370 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 S +++L NL A P GG V++ ++ S+ + S+ G + Sbjct: 371 PVPWRCDSTRLSQVLTNLVSNAIKYSPEGGVVSLRLESSERDVSVSVTDEGVGIPPDDLG 430 Query: 165 TQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T I + +A + + E + L + Sbjct: 431 TLFEPFKRSRTAAKDIPGVGLGLSVSRRIARAHGGDIEVESVVGTGSTFRLRLPR 485 >gi|320161442|ref|YP_004174666.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995295|dbj|BAJ64066.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 443 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 MA ++ + + + I H++ +PI LE L + V+ Sbjct: 211 MANSLE---RAEKNRKAMTADIAHELRTPIAVQRAHLEALQDGIYPLTPENLQPVLDQTE 267 Query: 55 LSSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + + E+ + A +Q+ + Sbjct: 268 FLARLVEDLRVLALADAGQIPLEFREIAPLDLVRRIYERFRPEADAKSISLQIVDETSGM 327 Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 R +IL NL A P GG++T+ V N F ++ G + Sbjct: 328 RLSIQGDERRIEQILNNLMSNALRFTPEGGRITLRVSQQGNMLAFMVEDTGPGISPEDLP 387 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN + + + LA + L + + L Sbjct: 388 FIFERFYRGNRNQSSEGTGLGLAIARQLALAHGGTLEAANRPEGGAKFTLSLP 440 >gi|300087613|ref|YP_003758135.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527346|gb|ADJ25814.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 368 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 72/233 (30%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 M +N+ LV+L + S + H++ +P+ I +LL ++L+ Sbjct: 131 MEENLIVT---DRLVSLGEMASGLAHEVNNPLTGIMGFTQLLLTDPRMPEALKGDLELVN 187 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108 + A ++ + + + ++ + + R++ ++ Sbjct: 188 GEAHRAAEIVRKLLNFARGGAKSVEPVDVNEVLLNVVRLREYELRIKNIEVEKRLTLALP 247 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163 E ++ +NL + A + R +D+ + +G +K Sbjct: 248 AVKADQMELQQVFINLIINAEYFMYRDHHGGNLRLETRDNNGWVTVVVADDGPGI-PEDK 306 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + + + + + R+ E ++ L Sbjct: 307 LTHIFTPFITTKEVGQGTGLGLSICRGIINRFGGRIRAENNENGGARFVVDLP 359 >gi|308233470|ref|ZP_07664207.1| integral membrane sensor signal transduction histidine kinase [Atopobium vaginae DSM 15829] gi|328943478|ref|ZP_08240943.1| sensor histidine kinase [Atopobium vaginae DSM 15829] gi|327491447|gb|EGF23221.1| sensor histidine kinase [Atopobium vaginae DSM 15829] Length = 527 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA + ++ L S + H++ +P+ A+ ++E + + ++E + + Sbjct: 287 MASELERDIKFEH---RLTSDVAHELRTPLMAMLATVEGMQDGVLPADNEHYETVAQEVR 343 Query: 59 SAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + M V SL+ + + + Sbjct: 344 RLSRLVDAMLRLSRIENGTRALKIEKSDAVYMVKSLVSMQEQLFAERNLRLKFDDKIPEH 403 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 S + + N+ A P GG V +S+ S+NE + S++ G + Sbjct: 404 ECMIEMDSDLIREAITNIMSNAMRYTPAGGWVIVSISKSRNEVLISVRDTGIGIAKEDIP 463 Query: 164 --FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + ++ R+ E + + Sbjct: 464 RVFARFWRSDASRGRVSGGLGIGLALTKEIIDKHNGRIAVESTLGKGTTFTLAIP 518 >gi|187479177|ref|YP_787202.1| two component sensor kinase [Bordetella avium 197N] gi|115423764|emb|CAJ50315.1| two component sensor kinase [Bordetella avium 197N] Length = 922 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 61/230 (26%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ N+ S L L + + HD+ +P+ + E L + V + A Sbjct: 681 AQHALLNVESEKLRNSLLAAVSHDLRTPLTGLIGMTETLARSATDAAVQEQANAIRDQAR 740 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------------ 109 + + L Q +E+ Sbjct: 741 RMHRMVVNLLDMARLQSQGTPLKREWQSVEELAGAALANMRETLRGHQVRVLPLSELPLV 800 Query: 110 -DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFT 165 ++ NL A P GG +T+ + S + S+ G F Sbjct: 801 ECDGMLIERVFCNLLENAAKYSPEGGTITLEGRVSDDALQVSVSDQGPGVAPGSEDRIFQ 860 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 + G ES + + + ++ R+ E L Sbjct: 861 KFTRGERESALPGVGLGLSVCRAIVQAHQGRIWVEPAPGGQGARFIFELP 910 >gi|161830507|ref|YP_001596306.1| hypothetical protein COXBURSA331_A0472 [Coxiella burnetii RSA 331] gi|161762374|gb|ABX78016.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His Kinase A (phosphoacceptor) domain protein [Coxiella burnetii RSA 331] Length = 252 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 24/228 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFM 67 + + + + H++ +P+ I LE L + ++ + + + Sbjct: 23 QLERIRSDFVANVSHELRTPLTVIRGYLETLLKKEVRDSKSYQKIFQQMYQHSTRMETII 82 Query: 68 RL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L L + I +++ Sbjct: 83 DDLLLLSRLESDDHPTEEKMNVAVPEILKTLCADAERISGEKQHFIQLKAEPNLYISGSE 142 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 E + N+ + + P G++ + + +FS+ G +I + Sbjct: 143 EELKSLFSNIIINSVKYTPSKGRINVKWYRDDDHAVFSVVDTGIGIAKVHIP-RITERFY 201 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L E + + Sbjct: 202 RVDKARSRESGGTGLGLAIVKHVLMRHDGELHIESEPGKGSIFTCRFP 249 >gi|330977387|gb|EGH77336.1| sensory box histidine kinase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 494 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 255 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 314 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 315 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 374 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 375 GDSQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 433 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 434 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 485 >gi|167634448|ref|ZP_02392769.1| sporulation kinase B [Bacillus anthracis str. A0442] gi|254682498|ref|ZP_05146359.1| sporulation kinase B [Bacillus anthracis str. CNEVA-9066] gi|254740396|ref|ZP_05198087.1| sporulation kinase B [Bacillus anthracis str. Kruger B] gi|167530336|gb|EDR93062.1| sporulation kinase B [Bacillus anthracis str. A0442] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|221069209|ref|ZP_03545314.1| osmosensitive K+ channel signal transduction histidine kinase [Comamonas testosteroni KF-1] gi|220714232|gb|EED69600.1| osmosensitive K+ channel signal transduction histidine kinase [Comamonas testosteroni KF-1] Length = 897 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-------------LLDEVGIEDE 48 A+ + + L S + HD+ +P+ I + + +L ++ + + Sbjct: 658 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTGILGAAQAALPHAPQGPAHHMLLQIRNQAQ 717 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 +Q + + ++ + VD L+G + V + + Sbjct: 718 ALQQLVDNLLAMARLQQGGVQLKREWMPVDELVGSALAQMRERLAAHVLQTSLPADLPLL 777 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL A P G + ++ + ++ + S++ G Q+ Sbjct: 778 QLDAVLMERVLVNLLDNAIKYTPEGTSIIVAARVLGSDCVLSVQDAGPGLPVHLPVEQLF 837 Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALLE 214 + + + + + RL + V S L Sbjct: 838 EPFTRGQAESAVFGMGLGLALAQRIVQAHGGRLQVAQAEPGPGTVFSISLP 888 >gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1299 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 66/247 (26%), Gaps = 34/247 (13%) Query: 1 MAKN---ICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEV------GIED 47 M +N + + ++ L + + H++ +P+ AI E L E + Sbjct: 755 MQQNHQRLAMANAQLERATRLKDEFLASMSHELRTPLNAILGLSEALQEEVYGSITDRQR 814 Query: 48 EVMQLIRLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIA 95 + + I+ S + + + + L + Sbjct: 815 KSLSTIQGSGQHLLELINDLLDLAKIESGKMELHICAVSLQKLCNSSLMFVRNQAHHKNI 874 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKI 153 E R ++L+NL A P GG V + ++ +N FS+ Sbjct: 875 KLTSQVTEKLWEIEVDERRIRQVLINLLSNAVKFTPTGGSVILKAEEDLLRNTICFSVMD 934 Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G E ++ V + V + R+ E Sbjct: 935 TGIGI-AKENMPKLFQSFVQIDSRLSRRYAGTGLGLALVQRTIEIHGGRVDVESEVGQGS 993 Query: 208 VLSALLE 214 L Sbjct: 994 CFRVTLP 1000 >gi|323491808|ref|ZP_08096983.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] gi|323313943|gb|EGA67032.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] Length = 850 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 56/226 (24%), Gaps = 26/226 (11%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + A +++ H++ +P+ I +LL + ++ ++ + + S L + + Sbjct: 473 MRADFLAKMSHELRTPLNGILGVSQLLKDKMVDQRDIEHVEVLCNSGEHLLAVLNDILDF 532 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWTGEKIDLSRERAK 117 + + + + +R+ + + Sbjct: 533 SKIEQGQFHIESEPFRLVELTNTVERIFKPLLDDKNVAFEVVNKIPHDKWANSDQVRLNQ 592 Query: 118 ILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171 I+ NL A G Q+S + G I + Sbjct: 593 IIFNLVSNAVKFTHHGSVTVTLGCQHQESGCLLNLDVVDTGIGIEQHRLS-HIFEPFVQA 651 Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + E D S + Sbjct: 652 EANTTREYGGSGLGLAIVQSLVTIMGGEIKLESEVDVGTRFSVRIP 697 >gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 594 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 63/237 (26%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 359 MTEERKL----DKLRNDFIANVSHELRTPISMMQGYSEAIVDDIAGTDEEKKEMASVIYD 414 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWT--- 105 L R+ G+ + Q I +K + + Sbjct: 415 ESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEISLEHDLQS 474 Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 +++ NL A P+ G+V + + + ++ +G+ + Sbjct: 475 KGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKVLERSDERGLFIEVRDSGSGIPEEDL 534 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + +K + + H S + + Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFSIFIPR 591 >gi|289628857|ref|ZP_06461811.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867397|gb|EGH02106.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 984 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975 >gi|257484047|ref|ZP_05638088.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298485545|ref|ZP_07003627.1| Two-component sensor CbrA: intrcellular carbon:nitrogen balance [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159945|gb|EFI00984.1| Two-component sensor CbrA: intrcellular carbon:nitrogen balance [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|331013063|gb|EGH93119.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 988 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|225405399|ref|ZP_03760588.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme DSM 15981] gi|225043101|gb|EEG53347.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme DSM 15981] Length = 533 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 62/244 (25%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLD-------EVGI 45 M K + + L A L I HD+ +P+ +I + +L E Sbjct: 283 MEKERLSRIREEEAANARTQQLRADLLRSISHDLRTPLTSISGNAGILMNDTGHLAEERK 342 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVD 97 + + S + + + G++ + + + Sbjct: 343 KQVCQDIYDDSMWLINLVENLLSITRMEGGTMQLNMEGELLEEVIGEAMRHISRKASEHT 402 Query: 98 KRVQVSWTGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V + ++++NL A P G + + + + + +G Sbjct: 403 LSVTQEGDFLLARMDSRLIIQVIINLVDNAIKYTPPGSHIQVRAFRRGDLAVVEIADDGP 462 Query: 157 LARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 ++ D + + + + ++ H V Sbjct: 463 GIPDS-AKERVFDMFYTASNKPVDSKRGMGLGLALCRSIVTAHGGQITVSDRIPHGCVFQ 521 Query: 211 ALLE 214 L Sbjct: 522 FTLP 525 >gi|149177151|ref|ZP_01855758.1| probable sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148844043|gb|EDL58399.1| probable sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 264 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 68/230 (29%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + F ++ L + H+I +P+ + +LELL E + +++ + Sbjct: 35 EEREKFEAQYSEIAT-LAGGLAHEIKNPLSTMSMNLELLTEDLETLDVPAKHRMLKKVES 93 Query: 56 SSMSAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + D + D + +++ Sbjct: 94 VQKECKHLQDILDAFLQFARVGKLALSASNLNDLVSDFIDFFRPQAREASIEISPHFDAD 153 Query: 106 GEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ + + ++L+NL + ++P GG + + + NG Sbjct: 154 LPQVQVDQALFRQVLMNLALNVIQAMPDGGLIELQTSHKDGMVYLDIIDNGKGIDEK-VK 212 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I + + + V + + ++ E + Sbjct: 213 SRIFETFFSTKPGGSGLGLPTVKKIIDAHHGKIECESEQGRGTRFTISFP 262 >gi|30261439|ref|NP_843816.1| sporulation kinase B [Bacillus anthracis str. Ames] gi|47526628|ref|YP_017977.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor'] gi|49184273|ref|YP_027525.1| sporulation kinase B [Bacillus anthracis str. Sterne] gi|65318708|ref|ZP_00391667.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|167639215|ref|ZP_02397487.1| sporulation kinase B [Bacillus anthracis str. A0193] gi|170706192|ref|ZP_02896653.1| sporulation kinase B [Bacillus anthracis str. A0389] gi|177651607|ref|ZP_02934396.1| sporulation kinase B [Bacillus anthracis str. A0174] gi|190568061|ref|ZP_03020971.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I] gi|229600392|ref|YP_002865852.1| sporulation kinase B [Bacillus anthracis str. A0248] gi|254733914|ref|ZP_05191628.1| sporulation kinase B [Bacillus anthracis str. Western North America USA6153] gi|254758883|ref|ZP_05210910.1| sporulation kinase B [Bacillus anthracis str. Australia 94] gi|30255293|gb|AAP25302.1| sporulation kinase B [Bacillus anthracis str. Ames] gi|47501776|gb|AAT30452.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor'] gi|49178200|gb|AAT53576.1| sporulation kinase B [Bacillus anthracis str. Sterne] gi|167512654|gb|EDR88028.1| sporulation kinase B [Bacillus anthracis str. A0193] gi|170128726|gb|EDS97592.1| sporulation kinase B [Bacillus anthracis str. A0389] gi|172082885|gb|EDT67948.1| sporulation kinase B [Bacillus anthracis str. A0174] gi|190560795|gb|EDV14770.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I] gi|229264800|gb|ACQ46437.1| sporulation kinase B [Bacillus anthracis str. A0248] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2] gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 600 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 59/230 (25%), Gaps = 28/230 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 ++ + + + H++ +PI A+ E L + +Q+I S + Sbjct: 366 ENMRSEFVANVSHELKTPIAAVKGFAETLLGGGVKDEETARSFLQIIYDESERLNRLIGD 425 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + L + + + + + + Sbjct: 426 ILELSKIESKRSPLDCSPIHISSFIESLLEKLNNVAAKKRITLHMDIPDELFMEADEDKL 485 Query: 116 AKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +I LNL + +T+ + + +F++ G + +I + Sbjct: 486 QQIFLNLLSNGINYTLDGGKVKIKVITLQRDNDTEKVVFTVSDTGIGIPKKDLP-RIFER 544 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + L E + L Sbjct: 545 FYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594 >gi|262171081|ref|ZP_06038759.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio mimicus MB-451] gi|261892157|gb|EEY38143.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio mimicus MB-451] Length = 597 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLTR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103 I + + ++ + S + + + + + +V Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161 T + ++L+NL A +L + I +Q S+ + + NG Sbjct: 478 TTVWVRVNPIQLEQVLINLLTNALQALDGQAERLVQIRLQISEQQVQIFVDDNGPGVGL- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + + + + + H + L L + Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIITLPR 590 >gi|170686758|ref|ZP_02877978.1| sporulation kinase B [Bacillus anthracis str. A0465] gi|170669281|gb|EDT20024.1| sporulation kinase B [Bacillus anthracis str. A0465] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDICTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|331019093|gb|EGH99149.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 982 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V + + Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEASEHTVDLIVEDEGGGI-SKAIMDRLFE 921 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|320012872|gb|ADW07722.1| integral membrane sensor signal transduction histidine kinase [Streptomyces flavogriseus ATCC 33331] Length = 594 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 58/217 (26%), Gaps = 20/217 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL----- 69 ++ S I H++ +P+ I L+ + + ++ ++ + + +++ Sbjct: 378 VMVSDIAHELRTPLSNIRGWLDAAQDGLADPDSSLVASLQEEAGLLQHIIDDLQVLAAAD 437 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 F + D Q V + ++L NL Sbjct: 438 AGSLRLNFRKLNLRELAEQSLDAHQTAAQAGRVALTGYFTDDLTIEGDPVRLRQVLGNLL 497 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P G V +S + + G+ + + +I D Sbjct: 498 SNAIRHTPPNGSVIVSGYRGEGGVELHVADTGSGIQPEDLP-RIFDRFWRAEQSRSRNTG 556 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + V + L Sbjct: 557 GSGLGLSIVRHLVQAHGGEVHVVSSPGTETVFTVRLP 593 >gi|269102732|ref|ZP_06155429.1| putative sensor histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162630|gb|EEZ41126.1| putative sensor histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 681 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + ++S L AL L + I H+I +PI I ++EL+ + ++ I Sbjct: 431 LNQARHKLVNSEKLAALGELTAGIAHEINNPIAVILGNVELIQFELGDGTAPIKDELEAI 490 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + + + + Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEIIWQHINPIVEESLTLVRSGTKKLDIKIETDLQA 550 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++L+NL M ++ + + + I + +G Sbjct: 551 KCSVEVNRHQLLQVLVNLQMNGVHAMNDSGILQISTQDWTEGKTTIGAIIKITDHGCGIS 610 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + + + + + + + S L Sbjct: 611 EQNLT-RIFNPFFTTRRSGTGLGLSVSQGIIESIGGEIRVQSEVEVGTTFSIFL 663 >gi|255021474|ref|ZP_05293520.1| Nitrogen regulation protein NR(II) [Acidithiobacillus caldus ATCC 51756] gi|254969107|gb|EET26623.1| Nitrogen regulation protein NR(II) [Acidithiobacillus caldus ATCC 51756] Length = 362 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 65/233 (27%), Gaps = 21/233 (9%) Query: 1 MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + + L A + + H+I +P+G + + +LLD ++ + R+ Sbjct: 127 LRQTEEALQERVYLSAQEMLRGLAHEIKNPLGGLRGAAQLLDAELPRADLREYTRIILHE 186 Query: 60 AIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + G SV+ L ++++ + ++ + ++ + Sbjct: 187 VDRLRGLVDRLRGPAGAPVLQSVNIHAVLEHCRRLLQTDLPEGMVLRFDYDPSLPEIQAD 246 Query: 115 RAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +++ + + +V + + +G Sbjct: 247 PGQLVQVFLNLLRNAEQAVQGRGQVLLRTRIERQVPWMQRIHSLAVRVDVVDDGPGIPAD 306 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + V + + + V S Sbjct: 307 FLP-RIFLPLITTRPEGMGMGLAIVQGIVRAHGGAVHCRSRPGE-TVFSVWFP 357 >gi|228475575|ref|ZP_04060293.1| sensor protein YycG [Staphylococcus hominis SK119] gi|228270357|gb|EEK11792.1| sensor protein YycG [Staphylococcus hominis SK119] Length = 608 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+ + + + + R ++ I + + Sbjct: 378 FVANVSHELRTPLTSMNSYIEALEEGAWKDENLAPSFLSVTREETVRMIRLVNDLLQLSK 437 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122 + + + + I + + T + ++ N+ Sbjct: 438 MDNETEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPNETIFTEIDPDKMTQVFDNV 497 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 498 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 557 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 558 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 596 >gi|223936067|ref|ZP_03627981.1| histidine kinase [bacterium Ellin514] gi|223895289|gb|EEF61736.1| histidine kinase [bacterium Ellin514] Length = 552 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 + L ++ + S + H++ +PI ++ E L+ E + E I Sbjct: 307 RQAFRRQLHLSEMKSNFVSSVSHELRAPIASVRLMAEGLERGKISEPKKQHEYFHFIVQE 366 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + D + +++ A ++R+++ + Sbjct: 367 CRRLSSLIENVLDFSRIEQGRKQYEFDPTDLVKLAEQTVKLM-QAYAEEQRIRIELEVKG 425 Query: 109 IDLSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 S + + L+NL A P+G V + ++ ++NE ++ G E Sbjct: 426 KARSVDLDGKAMQQALVNLIDNAVKHSPKGSVVKVGLEFAENEVALWVEDQGEGIPAAEH 485 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + ++L + L + Sbjct: 486 QKIFERFYRLGSELRRETQGVGIGLSIVKHIVEGHGGKVLVRSEVGQGSRFTIELPR 542 >gi|197118982|ref|YP_002139409.1| osmosensitive potassium channel sensor histidine kinase KdpD [Geobacter bemidjiensis Bem] gi|197088342|gb|ACH39613.1| osmosensitive potassium channel sensor histidine kinase KdpD [Geobacter bemidjiensis Bem] Length = 892 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57 A+ + +L ALL S I HD+ +P+ +I +L L + E+ L+ + Sbjct: 654 AEQAQILRARENLERALLNS-ISHDLRTPLVSISGALGALRDRTTYLEEESRRDLLEAAW 712 Query: 58 MSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105 A +F+ D +G +E ++ K Sbjct: 713 EEAGRLNRFVGNLLDMTRLEAGAMKPKRVPSDLQDLIGCALASLEPQLSKRKLTVRVDPG 772 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L+NL A P + + + + + G + Sbjct: 773 LPLVSMDMVLMTQVLVNLLDNALKYAPSNELIELESRALDGKVTLKVADRGPGVPPQDLE 832 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + + E + + ++ L Sbjct: 833 RIFDKFYRVPVPEGAGGTGLGLSICKGIVEAHGGTIHAENREGGGLKITVQLP 885 >gi|56415999|ref|YP_153074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364926|ref|YP_002144563.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130256|gb|AAV79762.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096403|emb|CAR62008.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. W3110] gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K12 substr. W3110] Length = 807 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673 >gi|262195782|ref|YP_003266991.1| PAS/PAC sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262079129|gb|ACY15098.1| PAS/PAC sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 559 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 67/237 (28%), Gaps = 28/237 (11%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL--------------ELLDEVGIEDE 48 + + L L L + + H++ +P+ +I E L+ + E Sbjct: 318 QSQVIQAEKLATLGQLAAGVVHELNNPLTSIVVYASYLEGKLSRGAHRGEALEVDPGDVE 377 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVS- 103 ++ I S+ + + V + + E + Sbjct: 378 KLRRIGASAQRISNLARELVQYAKPAHETVERVSINHVVLQALSLCEHLFENGRVHLARE 437 Query: 104 ---WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLAR 159 + + +I++NL A ++ G VT+ + ++ G+ Sbjct: 438 LAGGLPPVRAIPGQLEQIVINLVTNAVHAVDGEGTVTVRTAAGADEAVVLAVADTGSGV- 496 Query: 160 FPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + V + ++ + + S L Sbjct: 497 AEDLRARIFEPFFTTKTEGRGTGLGLSIVHGIVERHEGSIEVGDEAGGGALFSVTLP 553 >gi|168700859|ref|ZP_02733136.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 435 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 S + AL + + + HD + + I E++ L + + Sbjct: 198 RELLQRSRKMDALGRMVAGVAHDFNNLLTVIIGFGEVIQASAAGTPTQDLAAHVVEAGLR 257 Query: 63 -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 L+F R +D + D + ++ + RV + T + +S + Sbjct: 258 GQALTGQLLRFARAQPFTPEPLDLNRVVADAQPLVARLVGRGVRVTLEPTADLPPVSADP 317 Query: 116 AKILLNLFM---VAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +I L A ++P GG+ V S+ D + G + T++ Sbjct: 318 VQIGQVLLNLASNARDAMPDGGRLTLATVPGSLPDGAPAVCLRVSDTGCGM-TDDVRTRL 376 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + E L Sbjct: 377 FEPFFTTKETGTGLGMSIVADVVARHGGAISMETAPGSGTTFRICLP 423 >gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 948 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|30250022|ref|NP_842092.1| putative two-component sensor [Nitrosomonas europaea ATCC 19718] gi|30139129|emb|CAD85993.1| putative two-component sensor [Nitrosomonas europaea ATCC 19718] Length = 411 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSS---MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR- 54 M + + L A+ + + + H + +P+ L ++ + + Sbjct: 161 MTEAYALREQNRRNQRLAAMGEMAAGLAHQLRTPLSTALLYAGHLSGEALDPQERKRFAV 220 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTG 106 + +R + + + R V Sbjct: 221 KAIERLHHLEHLIRNMLQFVKGEPVPAGRVKLSVLLRKMQRVMAPQMQQRNLRFVVQDNS 280 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + L+ +RA + + A P G VT++ + +++E + G Sbjct: 281 RGVSLNVDRAALSNAVANLLDNAVQVSPVGSLVTLTCETTEDEARLIVSDEGPGIDPT-L 339 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + + V L + + + + + L + Sbjct: 340 RERVFEPFFTTRTEGTGLGLAIVHNLIQSMRGEIRIDSVPGTGTRFTISLPR 391 >gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 800 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 A+ + +L + + H+I +P+ I ELL + DE + + S+ Sbjct: 128 AREDRRTAQEENQAKSLFLANMSHEIRTPMNGIIGFTELLKSTPLNDEQQEFANIIEKSS 187 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSW 104 L + + + + + I + + S Sbjct: 188 HNLLNIINNILDLSKIESNKVEVEHITFETHHELDNTIDNFGVVAAENDIELYYFIDPSI 247 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLA 158 + + +IL NL A GG++++ ++ + F + G Sbjct: 248 SSRLKGDPTKIKEILTNLLNNAVKFTEAGGEISVEIEKLEATQGDRSLIEFRVIDTGIGM 307 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E+ +I + + + +LL E + S Sbjct: 308 -SQEQIKKIFEPFTQADSSITRKYGGTGLGLTITKEYVELMGGKLLVESEEGKGSTFSFT 366 Query: 213 LE 214 L Sbjct: 367 LP 368 >gi|269839128|ref|YP_003323820.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790858|gb|ACZ42998.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 539 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 56/237 (23%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + ++ +L+ + + HD+ +P+ I + + L +E + Sbjct: 294 RRRAMEMEAIKRADELKTSLINA-VSHDLRTPLATISAAADSLLRQDVEWSEEERRGFVR 352 Query: 58 MS----------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + +L+ Sbjct: 353 DIAEESRRLGRLVDNLLDMSRLEGGSLRPHKSWCDLGALVEETIDRLGSLTAHHQLHLEV 412 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + E +++ NL A P+G + I V+ +E ++ G Sbjct: 413 EEDLPPVLLDYVEIGQVVSNLLENAIKYAPQGTTIDIQVRRQGDEVRVAIADRGPGIPPQ 472 Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + R+ E V S L Sbjct: 473 DLSRIFDKFYRVQGSSPAPQGMGLGLSVAKGLIEAHGGRIWGENRPGGGAVFSFTLP 529 >gi|78063726|ref|YP_373634.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77971611|gb|ABB12990.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 1003 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 55/239 (23%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I +P+ AI +LEL+ + + ++ S+ Sbjct: 507 LREARVAADDANKAKSTFLATMSHEIRTPLNAIIGNLELMGRAELPPTEQRRLKTIVSSS 566 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 D L D+ + + V Sbjct: 567 DALLNIINDVLDLSKAESNQMALEHIPFDLRRVLQDVASIFRPLADAKGLSLECHVAAEL 626 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 + +++ NL A GG + + +++ G Sbjct: 627 ADGYVGDPTRLRQLVSNLVGNAIKFTEHGGITIDARLARGDARAGCVEIAVRDTGVGIPG 686 Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + +A L E A L Sbjct: 687 EALPTLFDVYMQADASIYRRFGGTGLGLPLCRRIARLMDGELTVESRLGEGSTFVATLP 745 >gi|306836867|ref|ZP_07469823.1| sensor histidine kinase [Corynebacterium accolens ATCC 49726] gi|304567239|gb|EFM42848.1| sensor histidine kinase [Corynebacterium accolens ATCC 49726] Length = 511 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 63/230 (27%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58 + +++ + + H++ +P+ ++ EL D + I S Sbjct: 275 LQRSVVTAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATNDVDLVFSKIDKESK 334 Query: 59 SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + RL ++ + +G + V Sbjct: 335 RMSLLVEDLLALTRAEGTRLDLRPVDLLELSLSVGSSARAAFPEREVKVVNNAQSIPVVN 394 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 + ++LLNL VT+ ++ + + + +G + F + Sbjct: 395 GDADRLHQVLLNLISNGLRHGGEDATVTLQLRRDNKDILVDVIDDGKGMSSEDAAHIFER 454 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ + + + L Sbjct: 455 FYRADSSRTRDTGGSGLGLAIVHSLVEQHGGSISVDSKMGQGTTFTVRLP 504 >gi|196035406|ref|ZP_03102811.1| sporulation kinase B [Bacillus cereus W] gi|218902546|ref|YP_002450380.1| sporulation kinase B [Bacillus cereus AH820] gi|228926469|ref|ZP_04089541.1| hypothetical protein bthur0010_11880 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120978|ref|ZP_04250220.1| hypothetical protein bcere0016_12870 [Bacillus cereus 95/8201] gi|195992083|gb|EDX56046.1| sporulation kinase B [Bacillus cereus W] gi|218538285|gb|ACK90683.1| sporulation kinase B [Bacillus cereus AH820] gi|228662638|gb|EEL18236.1| hypothetical protein bcere0016_12870 [Bacillus cereus 95/8201] gi|228833293|gb|EEM78858.1| hypothetical protein bthur0010_11880 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|108761502|ref|YP_631002.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465382|gb|ABF90567.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1077 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 62/216 (28%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---------------RL 64 + + H++ +P+ A+ +++L + E + + Sbjct: 702 ATVSHELRTPLTAVLGWVQMLRTGTLPPEKRERALATVERNARAQGQLVEDLLDVSRIMT 761 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 ++L + + + + + + + + G + +++ NL Sbjct: 762 GKLKLDVSSVDVSQVVEAVLESLRPAAEAKGIRIQAALDSGGTIMGDVSRLQQVVWNLLS 821 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDSH 179 A P+GG+V + V+ + ++ G + DG+ Sbjct: 822 NAVKFTPKGGRVQVLVERRNSSVEITVADTGQGISPQFLPHVFERFRQADGSTTRKAGGL 881 Query: 180 DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + ++ + L Sbjct: 882 GLGLAIVRHLVELHGGTVMATSEGEGRGATFIVSLP 917 >gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 729 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/237 (8%), Positives = 61/237 (25%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + ++ + + + H++ +P+ +I +LL E + + ++ + S Sbjct: 474 LLQEKQIAEAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVYGELNERQLKSVGNIS 533 Query: 58 MSAIIRLK---------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 S L + + I + + + + Sbjct: 534 KSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLLSPIADRKNVQIEISID 593 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 S +I+ NL A G V I + + ++ G + + Sbjct: 594 SSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIEARKKGDLVEITVTDTGIGIKPED 653 Query: 163 KFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + + ++ Sbjct: 654 QSKLFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFRSKPGEGSTFAFVIP 710 >gi|84501121|ref|ZP_00999356.1| phosphate regulon sensor histidine kinase, putative [Oceanicola batsensis HTCC2597] gi|84391188|gb|EAQ03606.1| phosphate regulon sensor histidine kinase, putative [Oceanicola batsensis HTCC2597] Length = 346 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 59/234 (25%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64 + + + + H++ +P+ A+ +E L + + + ++ + + Sbjct: 111 QAGQMRRDFVANVSHELRTPLTALLGFIETLRGPASKDPAAQQRFLGIMDREAHRMERLV 170 Query: 65 KFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + R+ Sbjct: 171 RDLLSLSRVEAEERVRPVTRVDIVAILESVQKSLEPLAAEAGVAFSRIDDGTPIHVPGDE 230 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLA---RFPE 162 + ++ NL A RG +V ++V +++ G P Sbjct: 231 DQLRQVFTNLIENAVKYGARGERVEVTVHLSEAVPSLRGPGVEVTVRDFGPGIEEIHIPR 290 Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL E L Sbjct: 291 LTERFYRVDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIESEPGQGCRFIVTLP 344 >gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] Length = 775 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 278 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 337 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 338 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 397 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 398 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 456 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 457 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 515 >gi|228983851|ref|ZP_04144046.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775900|gb|EEM24271.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 424 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 57/219 (26%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 ++ + L I + + ++ ++VS++ + ++++ Sbjct: 257 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 316 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 317 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 376 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 377 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 415 >gi|229127392|ref|ZP_04256387.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4] gi|228656074|gb|EEL11917.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4] Length = 351 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346 >gi|223936387|ref|ZP_03628299.1| integral membrane sensor signal transduction histidine kinase [bacterium Ellin514] gi|223894905|gb|EEF61354.1| integral membrane sensor signal transduction histidine kinase [bacterium Ellin514] Length = 608 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 22/231 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + DL A + H++ +P+ +I ++ L + G E +QLI Sbjct: 375 LRRQAALARMKNDLAA----TVSHELKTPLSSIRVLVDTLLDAEKLDEGTAREYLQLIAR 430 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLS 112 + ++ + + + + I D +++ + + Sbjct: 431 ENERLSRLIQHFLTFSRMERNKQAFHVMPLAVRPIIDIAVEAMPGGRLELQVPSDLPRVM 490 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + L A G V + + +FS++ +G E +I D Sbjct: 491 ADADAVATALINLLDNACKYSETGRHVVLRAEARNGSVLFSVQDHGIGIAARE-TKKIFD 549 Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E + L Sbjct: 550 PFYQVDQRLSRKGGGCGLGLSIVQSIVRAHDGCVSVESEPGRGSTFTITLP 600 >gi|254525181|ref|ZP_05137236.1| two-component system sensor histidine kinase-response regulator hybrid protein [Stenotrophomonas sp. SKA14] gi|219722772|gb|EED41297.1| two-component system sensor histidine kinase-response regulator hybrid protein [Stenotrophomonas sp. SKA14] Length = 661 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------- 50 + ++ ++ L + + H++ +P+ I ELL + + Sbjct: 259 LQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVI 318 Query: 51 ----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + V L L ++ +A K + V Sbjct: 319 ANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLNLLLGEAIGAQELVAEGKALDVHLQL 378 Query: 107 EKID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ + +Q N + ++ G+ Sbjct: 379 PEQPSLVLGDATRLQQVLWNLLSNAIKFTPAEGRIDLQLQADGNHWVITVHDTGDGIAPE 438 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + + H + L Sbjct: 439 FLHHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 497 >gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 1565 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I L S + H++ +P+ ++ +L LL +E + ++Q++ + Sbjct: 1311 QDITERRELDRLKTEFISVVSHELRTPLTSMRGALGLLDSGVLREEPETVEHMLQIVLRN 1370 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTG 106 I + L +G V + +++ ++ D + + + + Sbjct: 1371 CDRLIRLVNDILNLERLESGKVQLIKEACEVDHLLTDAVETVSAMAMEASINIELTSISA 1430 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---------ENIFSLKINGNL 157 +IL NL A P G V ++ Q + +FS+K G Sbjct: 1431 HVWASYDAIIQILTNLLSNAIKFAPEGTTVWLTAQLFDDPDSTDRATSFVLFSVKDQGRG 1490 Query: 158 ARFPE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + + + ++ R+ + I Sbjct: 1491 IPTNKLTTIFGRFQQVDASDARQKAGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYFT 1550 Query: 213 LE 214 L Sbjct: 1551 LP 1552 >gi|49477192|ref|YP_035564.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143998|ref|YP_082830.1| sporulation kinase B [Bacillus cereus E33L] gi|228914010|ref|ZP_04077632.1| hypothetical protein bthur0012_12470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229183632|ref|ZP_04310855.1| hypothetical protein bcere0004_12040 [Bacillus cereus BGSC 6E1] gi|49328748|gb|AAT59394.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977467|gb|AAU19017.1| sporulation kinase B [Bacillus cereus E33L] gi|228599875|gb|EEK57472.1| hypothetical protein bcere0004_12040 [Bacillus cereus BGSC 6E1] gi|228845615|gb|EEM90644.1| hypothetical protein bthur0012_12470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|297159981|gb|ADI09693.1| Histidine kinase [Streptomyces bingchenggensis BCW-1] Length = 557 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+++ + L + H++ +P+ + LE L + E E++ + + Sbjct: 319 MAESLQASEERQR---RLVGDVAHELRTPLANLRGYLEALRDGVVDPEPELLASLHEEVL 375 Query: 59 SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106 + ++ + +D L V T Sbjct: 376 LQQRIVDDLQDLALAEAGALTYHREDIDLGELLETCRTVHRAQAERAGVALTVETPGGEP 435 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162 + + + NL A + GG V +S+ + + G+ P Sbjct: 436 LYAHADADRLRQAVGNLVSNAVRATGPGGTVRLSLARRGAGAVVQVGDTGHGIPAEHLPH 495 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +++ + E + L Sbjct: 496 VFDRFWRADAARGRATGGSGLGLSIARQIVTDHQGTIGVESAVGAGTTFTIELP 549 >gi|229172078|ref|ZP_04299643.1| hypothetical protein bcere0006_11920 [Bacillus cereus MM3] gi|228611421|gb|EEK68678.1| hypothetical protein bcere0006_11920 [Bacillus cereus MM3] Length = 434 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 207 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 266 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 267 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLANVRTHYIKQSTSFFIAG 326 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 327 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGIGM-DTEQVKRLGSP 385 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 386 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 429 >gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 948 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|221134985|ref|ZP_03561288.1| osmolarity sensor protein [Glaciecola sp. HTCC2999] Length = 433 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/204 (9%), Positives = 60/204 (29%), Gaps = 6/204 (2%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY 73 L+ + I HD+ +P+ I + E++DE + + ++ + + Sbjct: 224 LMTAGISHDLRTPLTRIRLATEMIDEQHEWVKEGIVQDIEDMNDIIDQFINYARQDREEQ 283 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 +V+ + ++ Q +++ E ++L NL A Sbjct: 284 RETVNLNTIIEEVVQARHFDDHHTIAQRLNPLPEISLRRVAIKRVLDNLIENAFRYGSDH 343 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDIQFYYVILLA 190 ++ + I ++ G + G+ + + + Sbjct: 344 LEIYTGFSAKEKRIICHIRDFGTGIPEEQLPNLLQPFTQGDRARGSSGSGLGLAIIKRII 403 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + + + +++ L Sbjct: 404 DMHHGEVAFTNHPEGGLLVVFKLP 427 >gi|34497051|ref|NP_901266.1| two-component regulatory protein sensor kinase [Chromobacterium violaceum ATCC 12472] gi|34102908|gb|AAQ59272.1| two-component regulatory protein sensor kinase [Chromobacterium violaceum ATCC 12472] Length = 895 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 78/229 (34%), Gaps = 16/229 (6%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57 A++ + S L + S + HD+ +P+ + +L+ G + E+ Q I+ + Sbjct: 655 AQDAIVAMESERLRNSVLSVVSHDLRTPLTTMLGLANMLNAPTLPPGRQSEIAQSIQDEA 714 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI------EDFIAVDKRVQVSWTGEKIDL 111 + + + V +++V+ + ++++ + + L Sbjct: 715 IRMTKLVTNLLDMAKLQSGVKLNKEWQLLDEVVGSAVRACEHSLRHHKLELKLSRDLPVL 774 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165 + ++L+NL A P G ++ ++ + ++ ++ +G F Sbjct: 775 EYDAVLIERVLVNLLENAGKYTPAGSRIELAARHDGDKVRITVTDDGPGLPASMEHRAFD 834 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G EST + + + + H S L Sbjct: 835 KFTRGAPESTTPGVGLGLAICRAIIENHGGTIEAGNAQPHGARFSFTLP 883 >gi|38234502|ref|NP_940269.1| putative two somponent system sensor kinase protein [Corynebacterium diphtheriae NCTC 13129] gi|38200765|emb|CAE50469.1| Putative two somponent system sensor kinase protein [Corynebacterium diphtheriae] Length = 519 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 62/209 (29%), Gaps = 16/209 (7%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFM---------RLAF 71 H++ +P+ ++ EL D + + I + + ++ + R Sbjct: 302 SHELRTPLTSVKGYAELYRSGATTDADLVIEKIEDEAKRMSLLVEDLLALTRAEGARHDS 361 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 +D + + + +D R + + + ++L NL A Sbjct: 362 KPVDLLDLALNVSSSLRGAYPDRDIDVRSECTDVPVVEGDAARLHQVLTNLVANALKHGG 421 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDIQFYYV 186 +VTI + D+ + + +G + F + + + + V Sbjct: 422 DSARVTIKLADAGSNFAVKVIDDGIGLSEEDASHIFERFYRADSSRARSTGGSGLGLAIV 481 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L + + E H L K Sbjct: 482 KSLVESHGGEVSVESEQGHGTTFIVELPK 510 >gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1] Length = 949 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14] gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14] Length = 499 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ F ++ + + + + + Sbjct: 320 NSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLQSLMMDIEKEQAMKPISEIEIRASFPNE 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ N A + + ++ G+ Sbjct: 380 DVYINTDATRLKQVVCNFINNARKFTEKGYIHFGYAVDPVNADSVNIFVEDTGSGIPQEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + E L Sbjct: 440 QKEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVESEMGKGSRFIVTLP 492 >gi|205360803|ref|ZP_02686544.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205346982|gb|EDZ33613.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 465 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63 LVA+ L + + H+I +P+ +I E G E+ Q++ + Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESYELAQVMAKEADRLNRV 299 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115 + + + L DI + ++ D + Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++LLNL++ A ++ R G +++ ++S + I ++ +G + I + Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 948 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|218777944|ref|YP_002429262.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759328|gb|ACL01794.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 782 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 67/241 (27%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIR 54 + M+ V L + HD + +G I E+ + E++ + Sbjct: 402 QRQLLQAQKMESVGRLAGGVAHDFNNMLGVIVGHAEMALDATAMDSEIREDLTEILDAAK 461 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 S+ L F R ++ + + +++ I + + + + + + + Sbjct: 462 RSANLTRQLLGFARKQTARPIVMNINEAVNSMLKMLRRLIGENIELYWNPSPDVWPVEMD 521 Query: 115 RAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156 +++ L ++ + + + + NG Sbjct: 522 PSQVDQILANLAVNVKDAIQGIGRMTIATYKVCITNMKSPESADFTPGDYVVLEVGDNGK 581 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E I + + + + V + +NK + E V L Sbjct: 582 GM-DEETMHMIFEPFFTTKGVGEGTGLGLATVYGIVRQNKGFIKVESELGQGTVFRIYLP 640 Query: 215 K 215 + Sbjct: 641 R 641 >gi|197123947|ref|YP_002135898.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196173796|gb|ACG74769.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 523 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 78/230 (33%), Gaps = 18/230 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55 + + L + + A+ L + H+I +P+G I +L+ + + E ++LI+ Sbjct: 282 EREVSRRLFHAEKMSAVGQLAGGVAHEINNPLGGILAFAQLMSREERSPEDMESLRLIQD 341 Query: 56 SSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108 ++ A ++ + VD + D ++ + + V Sbjct: 342 AANRAKRIVESLLRFSRRPREEERGPVDLRQVVDDALFLLSPQLRAGRFEVVRRFEPAVA 401 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 I + ++++NL + A ++ G VT++V + S+ G + +I Sbjct: 402 IGNGNQLQQVVVNLLVNALQAMGDRGTVTVAVGPAAPGRLRLSVADTGPGV-PEDAALRI 460 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLE 214 + + + + + E+ + E L Sbjct: 461 FEPFFTTKPEGQGTGLGLSICYQIVEEHGGTIRLEQPGPHRGACFVLELP 510 >gi|118580505|ref|YP_901755.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503215|gb|ABK99697.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 802 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 + FN ++ + +L I HD + + AI ++ L E + +S+ Sbjct: 427 EQELFNAHRLESIGVLAGGIAHDFNNLLTAILGNISLAKMLVSEGDRMFRNLDEAEKASL 486 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR 113 A + + V + L I + F + + Sbjct: 487 RAKGLTQQLLTFSRGGAPVRRTLSLAAIIRESAAFTLSGSGTTCRFILPEDLWPVEADEG 546 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARFP 161 + ++++ NL + A ++P GG+V IS + ++ G Sbjct: 547 QISQVINNLVLNADQAMPGGGEVEISCANVVIDAKSQLPLPAGAHVRIAVSDRGQGI-PQ 605 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E T+I D + + + V + + + + L Sbjct: 606 EAITRIFDPYFTTKRNGTGLGLATVYSIIRNHDGHIAATSRQGGGSTFTIHLP 658 >gi|116748152|ref|YP_844839.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697216|gb|ABK16404.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 611 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 53/228 (23%), Gaps = 25/228 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAII 62 + + + H++ +P+ AI S E L + +++ Sbjct: 368 EKVRQDFVANVSHELRTPLTAIKGSAETLLSEPSPESGTLASFLGIILRNSEHMVKMVDD 427 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------KIDLSRE 114 L+ RL G + + D A + + Sbjct: 428 LLQLARLESRQRGFKPAPVNPADALATAWKACAPQADAKQVGLENALPPAGLEVPAEFDQ 487 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ NL P G + + + +F ++ G + Sbjct: 488 LVQVFRNLLENGIRYGPPGKNLEVFHKMEGKNVVFGVRDQGPGIARQHQQRIFERFFRLE 547 Query: 175 TI-----DSHDIQFYYVILLAHENKIRLLPEI-IDD--HNVVLSALLE 214 S + + + R+ + D L Sbjct: 548 KHRSTLPGSTGLGLAICRHIVRNHGGRIWVQSPNPDGTEGTTFFFSLP 595 >gi|325522091|gb|EGD00759.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia sp. TJI49] Length = 713 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + + H+I +P+ I +LELLD ++ +R Sbjct: 468 LVRQLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLDRHALDLSQRSRVRT 526 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 +A L+ + ++ + + IE + IA + Sbjct: 527 LRTAAAGLLELVSGILDFSKIEAGAMSVESIEFDVMGVIARELGAFAPVAKAKGLSLFCE 586 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155 + S T A++ NL A +G + +++ G Sbjct: 587 IAASRTQRMRGDPTRLAQVFGNLLSNAIKFTAQGHVTARVLVVRGECGAAELAIAVEDTG 646 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + L R+ + Sbjct: 647 IGIGGADLHKLFKAFSQVDATITRRYGGTGLGLALCDRLVTAMGGRISVTSAPGAGSCFT 706 Query: 211 ALLE 214 + Sbjct: 707 VRVP 710 >gi|83646428|ref|YP_434863.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634471|gb|ABC30438.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 796 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 56/236 (23%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS- 59 +A++ + +L + + H+I +P+ + L+ + + + E + + S Sbjct: 66 LARDEAMAANKAK--SLFIANMSHEIRTPLNGVIGMLQAMMQGDLSREQKARAKTALTSG 123 Query: 60 ------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------RVQVSW 104 L F +L LG + + + Sbjct: 124 KLLLTVINDLLDFSKLEADKVNLERIPFSLGRLLDSCFPVVCSQASDKGLTLTLTLAAHL 183 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +I+ NL A RG + G ++ Sbjct: 184 PDQIMGDPTRLKQIICNLLSNAVKFTKRGEVSLYCYPVEDRLVFG-VADTGVGI-PADRQ 241 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + L RL L Sbjct: 242 QQIFEPFSQADDSHTRRYGGTGLGLSISSRLVEAMGGRLKVRSEPGVGADFYFALP 297 >gi|313672158|ref|YP_004050269.1| pas/pac sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312938914|gb|ADR18106.1| PAS/PAC sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 825 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 18/229 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 K ++ + L+ I HD + + AI+N + + + V+ L Sbjct: 453 KKEMIRKEQIETIGLVAGGIAHDFNNILSAINNYMLVAKMSFGENEKVVEFANNVITLCG 512 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--EQVIEDFIAVDKRVQVSWTGEKIDLS 112 A L + + L L V+ + + Sbjct: 513 TGKFLANKLLVLSKGGEHISLVETDLYSLISETARFVLSGTNIKYDVKKADYYCYGFVDQ 572 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-------NIFSLKINGNLARFPEKFT 165 A+I NL + A ++P GG++ I ++ + +++ G + Sbjct: 573 NLVAQIFHNLLINAKQAMPEGGEIKIYIELDDSFLIFEKPSIKITVEDTGPGI-PEDVID 631 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + Y V + ++ R+ + + L Sbjct: 632 KIFQPFFTTKQHGSGLGLYIVKAIVEKHDGRITVQSTKGKGATFTINLP 680 >gi|217961049|ref|YP_002339617.1| sporulation kinase A [Bacillus cereus AH187] gi|229140259|ref|ZP_04268816.1| hypothetical protein bcere0013_33590 [Bacillus cereus BDRD-ST26] gi|217063190|gb|ACJ77440.1| sporulation kinase A [Bacillus cereus AH187] gi|228643192|gb|EEK99466.1| hypothetical protein bcere0013_33590 [Bacillus cereus BDRD-ST26] Length = 510 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + V+ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500 >gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SMS-3-5] gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli SMS-3-5] Length = 949 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQVRADGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689 >gi|158338165|ref|YP_001519342.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158308406|gb|ABW30023.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 417 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIR 54 A+N + + L + + I H++ +P+ AI +LL + V ++ Sbjct: 165 AQNQEL-IKAYRLKSEFIATISHELRTPMNAIMGFSQLLLRQYPDPLSEQQLDMVQRIFD 223 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103 S + + + + ++ + I I + + V Sbjct: 224 NSRNLLTMVNEVLDFSKIEANRLELHPEPFQLSVPILATIQELQALAVEKALTLKAEIPE 283 Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + ++L+NL A G Q ++ S+ G Sbjct: 284 TLQSIQLTNDPECLRRVLVNLISNAIKFTEAGEVTLQLHQPQPDQIKISVVDTGIGMTPE 343 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T I D + L + ++ + L Sbjct: 344 QLST-IFDPFCQADQSLTRHHSGTGLGLAITESLVKAMQGQISVSSQPGVGSTFTVELP 401 >gi|118476909|ref|YP_894060.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam] gi|196040694|ref|ZP_03107993.1| sporulation kinase B [Bacillus cereus NVH0597-99] gi|196046534|ref|ZP_03113759.1| sporulation kinase B [Bacillus cereus 03BB108] gi|225863302|ref|YP_002748680.1| sporulation kinase B [Bacillus cereus 03BB102] gi|229090392|ref|ZP_04221635.1| hypothetical protein bcere0021_12210 [Bacillus cereus Rock3-42] gi|118416134|gb|ABK84553.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam] gi|196022718|gb|EDX61400.1| sporulation kinase B [Bacillus cereus 03BB108] gi|196028484|gb|EDX67092.1| sporulation kinase B [Bacillus cereus NVH0597-99] gi|225788418|gb|ACO28635.1| sporulation kinase B [Bacillus cereus 03BB102] gi|228692975|gb|EEL46693.1| hypothetical protein bcere0021_12210 [Bacillus cereus Rock3-42] Length = 402 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALALITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 933 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQVRADGDYLSIRVRDTGVGIPA 614 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGIGSQFTVRIP 673 >gi|298241431|ref|ZP_06965238.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554485|gb|EFH88349.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 563 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIR 54 M + ++ L S + HD+ +P+ +I + L + + +Q I Sbjct: 319 MQVELLRRTDALRSA--LLSSVSHDLRTPLASIKAAASSLLQEDVSWSEEERAGFIQAIE 376 Query: 55 LSSMSAIIRLKFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + +D LI + Sbjct: 377 RQADRLNRLVGNLLDMSRIEGGALHPEKEWYPIDELIHDVLGHMQTTLEGREIRTSLPED 436 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +++ NL A G + ISV + S+ G + Sbjct: 437 LPPVQIDYLQLDQVVTNLLENAARYTAVGSPIEISVDVMDENMLVSIGDYGPGIPPGDL- 495 Query: 165 TQIVDGNVE--------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D S+ + L + R+ E + + L Sbjct: 496 ERIFDKFYRVSGTRRSSSSTMGTGLGLAVCRGLIEAHGGRIWAENRLEGGAIFRFTLP 553 >gi|224369332|ref|YP_002603496.1| putative pilS, sensory histidne kinase [Desulfobacterium autotrophicum HRM2] gi|223692049|gb|ACN15332.1| putative pilS, sensory histidne kinase [Desulfobacterium autotrophicum HRM2] Length = 437 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 65/217 (29%), Gaps = 16/217 (7%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMR 68 + A+ + + + H+I +P+ +I S++LL E ++L+++ + Sbjct: 213 ERMAAMGEMVAGMAHEIKNPLASISGSIQLLAENTEPGSPNLRLMQIVLRETQRLSAIVT 272 Query: 69 LAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + ++ +++ + Sbjct: 273 DFLLFAKPKSGTVKEMRLDLAIGEVVSLFRLDPICVGRIEVNLKLDSPVWIAMDPGHLKQ 332 Query: 118 ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 +L NL ++ + G +TI + + ++ G + + + D + Sbjct: 333 VLWNLLKNGAEAIEKTGTLTIRMAVTRTDRIHLTISDTGCGIKETD-QETVFDPFFTTKP 391 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + + + E + +L Sbjct: 392 SGSGLGLSIVHRIIDSYQGVIDLETSPGKGTTFTLIL 428 >gi|224476782|ref|YP_002634388.1| putative alkaline phosphatase synthesis sensor protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421389|emb|CAL28203.1| putative alkaline phosphatase synthesis sensor protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 569 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 63/221 (28%), Gaps = 20/221 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 +L + + H++ +PI +I E L + DE + +I S ++ Sbjct: 340 ENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDENSLDEFLNIILKESNRIESLVED 399 Query: 67 MRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERA 116 + + + A K +++ + + + A Sbjct: 400 LLDLSHIEQQTEIRTERVDLSEVTQTTVNTLYAYAQRKAIEIDAEIQNHVMIDAEASKIA 459 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ NL A V + V ++ I ++ +G E F + + Sbjct: 460 QVVTNLVSNAINYSSDESTVYVRVYQKDDKRILEVEDHGIGIAPEEQKHVFERFYRVDKA 519 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + R+ E D + Sbjct: 520 RSRDSGGTGLGLSITKHIVEAYQGRIQIESEPDVGTTFRII 560 >gi|220919457|ref|YP_002494761.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] gi|219957311|gb|ACL67695.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] Length = 627 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 + +N+ M+ V L + HD + + + ELL D + + + Sbjct: 244 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVVLGYSELLVRDLPTTDPRLRECADGIIE 302 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +A L R + + D+ +++ I V + + + Sbjct: 303 AAHRAVGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLGRAIGERIEVTTTLQEQPWPV 362 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDS-------------KNENIFSLKING 155 + ++ L A ++P GG + I+ + +++ +G Sbjct: 363 LADADQLAQVLLNLAVNARDAMPDGGPLHIATANVEVPQALRELSLPAGRYVTLTVRDSG 422 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + + + E + L Sbjct: 423 MGM-TEEVRARIFEPFFTTKETGTGLGLATVYGIVRQAGGAIRVESRPGAGTSFTVYLP 480 >gi|242279664|ref|YP_002991793.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242122558|gb|ACS80254.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 584 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 25/233 (10%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSLE-LLDEVGIEDEV-------MQL 52 + + L ++ L + I H+I +P+ + ++ LL++ E ++ Sbjct: 328 RQMVETGKLASIGELAAGIAHEINNPVAIMIEEAGWVQDLLEDEEGEITSYTEISRALEQ 387 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 +R + T S V + +I ++ ++ + + Sbjct: 388 VRTQGGRCKDITHKLLSFARQTDSRVADVQLPGLIEEIVEISMQQARYAQVELSLDLDKG 447 Query: 108 KIDLS---RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163 + E ++ LNL A ++ G + ++N + S+ G Sbjct: 448 MPPVRASVSELQQVFLNLINNAIQAMESKGGKLMISCHAENEHALVSIADTGPGIPAANL 507 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + L H+ + E + L Sbjct: 508 G-RIFDPFFTTKPVGKGSGLGLSICYGLVHQMGGEIEVESDLGRGARFNIWLP 559 >gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 948 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|197124736|ref|YP_002136687.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] gi|196174585|gb|ACG75558.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] Length = 638 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 + +N+ M+ V L + HD + + + ELL D + + + Sbjct: 255 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVVLGYSELLVRDLPTTDPRLRECADGIIE 313 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +A L R + + D+ +++ I V + + + Sbjct: 314 AAHRAVGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLGRAIGERIEVTTTLQEQPWPV 373 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDS-------------KNENIFSLKING 155 + ++ L A ++P GG + I+ + +++ +G Sbjct: 374 LADADQLAQVLLNLAVNARDAMPDGGPLHIATANVEVPQALRELSLPAGRYVTLTVRDSG 433 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + + + E + L Sbjct: 434 MGM-TEEVRARIFEPFFTTKETGTGLGLATVYGIVRQAGGAIRVESRPGAGTSFTVYLP 491 >gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 948 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|228990403|ref|ZP_04150368.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM 12442] gi|228996504|ref|ZP_04156143.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17] gi|228763136|gb|EEM12044.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17] gi|228768929|gb|EEM17527.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM 12442] Length = 466 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 57/234 (24%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA ++ + + H++ +P+ I E + + + + QLI Sbjct: 228 MANSLEMEDVKRK---EFSANVSHELRTPLSYIKGYSEAILDGVAKGQQQSKFTQLIHRE 284 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + ++ + + Sbjct: 285 AGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPD 344 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164 ++L NL A + G ++I ++ + +K G Sbjct: 345 IIVTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLKKKDRQCELKIKDTGIGIDAEHLEQ 404 Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + H + E + L Sbjct: 405 LGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLP 458 >gi|297563708|ref|YP_003682682.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848156|gb|ADH70176.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 534 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 12/203 (5%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +PI + LEL+ D+ EV++L+ ++ + L Sbjct: 326 HELRTPITIVRGHLELMGDDPEERREVLRLVTDELDRMSRIVEDLLLLAKAQQPDFLREE 385 Query: 83 LGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + ++ D R++ G + + ++ L A G Sbjct: 386 EVSLAELTSDIDAKVRRLGDRDWRLESLAEGVARLDPQRVTQAVVQLAANAVRHTAPGST 445 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG-NVESTIDSHDIQFYYVILLAH 191 + + S ++ +F + G E F + G + V +A Sbjct: 446 LRVGSGFSGDDVLFWVSDQGPGIPAEEHGRIFERFSRGSGAARGDRGAGLGLAIVRAIAE 505 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + R+ + ++ Sbjct: 506 AHHGRVDLRSAPGVGSTFTLVIP 528 >gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 948 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 961 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|254409946|ref|ZP_05023726.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182982|gb|EDX77966.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1957 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----------EVM 50 + + + + ++ A + S HD+ P+ A+ + +LL + ++ ++ Sbjct: 1720 LTQELQRSNQELEQFAYIAS---HDLQEPLRAVASYTQLLQQDYLDQLDESAQDYMAFII 1776 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L + RL + + IA+ + Sbjct: 1777 DGATRMRQLIQALLMYSRLGTRPPEGKPTDCNAILHQVTENLQIAIAESQATISHDSLPT 1836 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQ 166 + + +++ + ++ +Q +N +F +K NG + + Sbjct: 1837 VQADPTQVIQLFQNLIANAIKFCRDRPPHIQIEAQLRENAWLFQVKDNGIGIKPKYL-DR 1895 Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I I + + ++ E L Sbjct: 1896 IFVIFKRLHTRREFSGTGIGLAVCKKIVERHGGQIWVESQPGVGSTFFFTLP 1947 >gi|171060406|ref|YP_001792755.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170777851|gb|ACB35990.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 675 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 80/235 (34%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52 +A L S L A+ L + I H++ +PI I +L++L ++L Sbjct: 435 LAAAQSQLLRSEKLAAVGQLTASIAHEVNNPIAVIQGNLDVLRSQLPAATAATVHTELRL 494 Query: 53 IRLSSMSAIIRLKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104 I + + + VD+ L D ++ +A + Sbjct: 495 IDEQIERMRLIVTQLLQFAKPAEYAGYIAPVDTARVLDDCLVLVGHLLARTRITVQRDFT 554 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 T + E ++L+NL + A ++P GG + ++ +D + + S+ +G E Sbjct: 555 ATRQPGINRNELQQVLVNLLVNAIHAMPEGGALGLATRDVEPDSVAISVTDSGAGLDV-E 613 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLEK 215 Q+ V D + + L L D + LL + Sbjct: 614 LMDQLFQPFVTRKKDGTGLGLWISRSLVERYGGDLRAANRSDGVIGAEFTVLLRR 668 >gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 591 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 62/226 (27%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL-K 65 + + + + H++ +PI A+ E L ++ +Q+I S + Sbjct: 363 ERMRSEFVANVSHELKTPIAAVKGFAETLLGGAVNDEETARSFLQIIYDESDRLNRLIGD 422 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEKIDLSRER 115 + L+ + V +++ + + + + ++++ Sbjct: 423 ILALSKIESKRVPLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQLEMEHGLYVEADEDRL 482 Query: 116 AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +I++N+ P G ++ + G + +I + Sbjct: 483 RQIMMNVIANGVNYTPEGGKVSVNIESIDEDHIRIQISDTGIGIPKKDLP-RIFERFYRV 541 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L +K + L Sbjct: 542 DKARSRSSGGTGLGLSIVKHLVELHKGTIAVTSAVGVGSTFVIELP 587 >gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 948 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|162453153|ref|YP_001615520.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161163735|emb|CAN95040.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 516 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 58/215 (26%), Gaps = 19/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H+ SP+ +I + ELLDE ++ I L + + Sbjct: 300 FAADVAHEFKSPLTSIRGAAELLDEGAADDLEARRRFLRNIELDVARLDRLVSRLLELSR 359 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLSRERAK-----ILLNLFMVA 126 S +++ L V V E + LLNL A Sbjct: 360 IEASSEAMTVLDLEALVARVVERRASPGQPVELRYEMRTRLLRARQTDLETALLNLVDNA 419 Query: 127 HASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQIVDGNVESTID--SH 179 P G V ++V+ + +++ G +I D + Sbjct: 420 VKFSPPGEVVVVTVEGGEGREGERTARIAVRDRGPGVPPQHLP-RIFDRFFTTDEGRDGT 478 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E L Sbjct: 479 GLGLAIVKSVVEAHGGAVTVESAPGEGASFVVELP 513 >gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi] gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 948 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822] Length = 2003 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 59/241 (24%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQL 52 + + + + ++ + + + H++ +P+ I ++ + + ++ Sbjct: 1528 LEQEVRERQRAEEIAEAANRAKSEFLANMSHELRTPLNGILGYAQICKKDKNLNEQQKNR 1587 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103 I + L + + + L + DF+ + Sbjct: 1588 IEIIHQCGEHLLTLINDILDISKIEARKMELCPTDFYFGDFLRGILEICQIKAEQKGISL 1647 Query: 104 -------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + +IL+NL A +G F ++ G Sbjct: 1648 IFQPLSSLPKIVQVDEKRLRQILINLLNNAVKFTEKGSITFKVSYQKGK-VNFQVEDTGI 1706 Query: 157 LARFPEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + G + + LA + + + S Sbjct: 1707 GIAPNQLEEIFLPFQQVGEYSRKTEGTGLGLSISRQLAQMMGGTITVKSSLGKGSIFSLD 1766 Query: 213 L 213 L Sbjct: 1767 L 1767 >gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 534 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 22/229 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKEDKPVPVLLAPTLPNF 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + +++ N A +G + FS+ G P+K Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKEDTCEIEFSVADTGMGI-EPDKVD 477 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ D V S + + + E Sbjct: 478 RVFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGTGSRFWFT 526 >gi|228992330|ref|ZP_04152261.1| hypothetical protein bpmyx0001_30720 [Bacillus pseudomycoides DSM 12442] gi|228767355|gb|EEM15987.1| hypothetical protein bpmyx0001_30720 [Bacillus pseudomycoides DSM 12442] Length = 519 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52 + K S L L + I H+I +P+ A+ L LL E ++ Sbjct: 281 LKKTEKLLRKSEKLAVVGQLTAGIAHEIRNPLTALKGFLTLLQPDISEQNKWYIDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + S + ++ ++ I + + ++ Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEI 400 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ A ++PRGG + I + +N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLP 506 >gi|229134078|ref|ZP_04262898.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196] gi|228649413|gb|EEL05428.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196] Length = 448 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +A N S+ + S + H+ SP+ +I + L +++ Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105 I S K + L Q + ++ +K + V + Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 330 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 I + + ++ N+F + GG + V++ ++ + S+ NG E Sbjct: 331 VPDIFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEKEE 390 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D I+ + V + + + + L K Sbjct: 391 -MDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448 >gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] Length = 740 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 68/228 (29%), Gaps = 23/228 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----- 63 +++ S + H++ +P+ AI L +L++ + + ++ +R S+ Sbjct: 369 ITAQKAKEEFFSNMSHELRTPLNAILGFLNILNKQISDKKHLEYLRHVGTSSKQLLNLIN 428 Query: 64 -----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + +I+ I++ + G I Sbjct: 429 DILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIGDL 488 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171 ++I+LNL A P GG +++ + + + ++ G P+ +I Sbjct: 489 FRISQIILNLLSNAIKFTPDGGTISLYIDYKEEKFSIVVQDTGIGM-SPDVQDKIFKPFV 547 Query: 172 -----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L +L+ E + + Sbjct: 548 QADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGSTFKVKIP 595 >gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] Length = 1232 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 64/240 (26%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + H+I +P+ AI ELL + ++ ++ ++ Sbjct: 660 MEQDLVAAKERAEQASIAKGMFLANMSHEIRTPMNAIIGFTELLLDSALDPVQLKHMQTV 719 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTG 106 SA L + + L ++ + + Sbjct: 720 RQSARSLLGLLNDILDTAKLERGALELDMHVFSLKQLCQQIMAELQIQADKKGLGLHLDY 779 Query: 107 EKIDLSR------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L+NL A G V +SV ++ G Sbjct: 780 VHTTPDQVLGDELRIRQVLVNLLGNAIKFTLTGE-VRLSVDVLGEGVRMQVQDTGIGIAV 838 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ I + + L ++ ++ L Sbjct: 839 -ERIEHIFTPFTQADASMARRFGGTGLGTTIARQLTELMGGKISVTSVEGQGSCFVVWLP 897 >gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483] gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483] Length = 534 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 22/229 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKEDKPVPVLLAPTLPNF 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + +++ N A +G + FS+ G P+K Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKEDTCEIEFSVADTGMGI-EPDKVD 477 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ D V S + + + E Sbjct: 478 RVFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGTGSRFWFT 526 >gi|163940905|ref|YP_001645789.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163863102|gb|ABY44161.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +A N S+ + S + H+ SP+ +I + L +++ Sbjct: 221 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 280 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105 I S K + L Q + ++ +K + V + Sbjct: 281 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 340 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 I + + ++ N+F + GG + V++ ++ + S+ NG E Sbjct: 341 VPDIFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEKEE 400 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D I+ + V + + + + L K Sbjct: 401 -MDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458 >gi|308273634|emb|CBX30236.1| hypothetical protein N47_D30450 [uncultured Desulfobacterium sp.] Length = 598 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 55/227 (24%), Gaps = 25/227 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 ++ + + H+I +P+ AI E L + + +I + I + Sbjct: 369 ENMRRDFAANVSHEIKTPLTAIKGFTETLKAGALNKPEEAFRFVGIIENHTNRLISIIDD 428 Query: 67 MRLAF-------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + L+ I ++ D + + Sbjct: 429 LMKLSFIEQNSAGQEIALMDCMIRPILLSAIQICRLKADEKKIKIVCICDEGLSAKINAA 488 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + +NL A V I S+ + +G E ++ + Sbjct: 489 LIEQAFVNLIDNAIKYSEPETSVEIEALKSETGITIVFRDHGIGI-SSEHIPRLFERFYR 547 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + N + E + Sbjct: 548 VDASRSRKLGGTGLGLAIVKHIVNANGGDISVESKPGKGSSFCIQIP 594 >gi|320326090|gb|EFW82147.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea str. B076] Length = 984 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975 >gi|182418132|ref|ZP_02949432.1| sensor protein KdpD [Clostridium butyricum 5521] gi|237666286|ref|ZP_04526273.1| sensor protein KdpD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377950|gb|EDT75490.1| sensor protein KdpD [Clostridium butyricum 5521] gi|237658376|gb|EEP55929.1| sensor protein KdpD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 468 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 +NI + L + L I HD+ +P+ AI + +L+ ++ Sbjct: 234 RENIRIEMERERLRSNLIRGISHDLRTPLTAIVGASGVVIDNINKLPQETIKDLVKDINE 293 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E + + + ++ + + VD ++ + Sbjct: 294 EALWLNNLVENILNMTRIGEGKLVIKKQDEVVDDIVDESLRHISGLLSNRDVQVSLPREV 353 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++L+NL A + + V + +F + NG Sbjct: 354 ISIPVDGKLIVQVLINLLDNAVKYTDEKCTIYLRVFQKDDFIVFEIADNGEGINES-IID 412 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D V + + + + + + + S L Sbjct: 413 KIFDSFVSYSGKIVDGKRGMGLGLAICKAIINAHGGEITAGKSPEGGALFSFTLP 467 >gi|218779276|ref|YP_002430594.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760660|gb|ACL03126.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 589 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 61/225 (27%), Gaps = 24/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 ++ + + H+I +PI AI +E L D+ +++I + ++ Sbjct: 364 ENMRRDFVANVSHEIKTPITAIKGFVETLLDGALDDKENAKRFLEIISRHTDRLKAIVED 423 Query: 67 MRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + ++L + + + + + Sbjct: 424 LLELSRIEQAGGRELPLERASVKEALETAVQVCEARAISENITVEMDCPDDLTAVFDPTM 483 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 + ++NL A G V + + E + ++ G E ++ + Sbjct: 484 IEQAVVNLLDNAVKYSEEHGVVRVGAKAEGGEVLIWVEDEGPGI-SEEHLPRLFERFYRV 542 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + V + + + + + L Sbjct: 543 DKARSRNLGGTGLGLAIVKHIMAAHGGHVSVKSEKGKGAAFTLHL 587 >gi|297583656|ref|YP_003699436.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142113|gb|ADH98870.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 597 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 66/216 (30%), Gaps = 23/216 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ ++ E L ++ + + +++I S + + Sbjct: 364 FVANVSHELKTPVTSLKGFTETLLEGAVNDDELRMKFLRIIANESDRLETLIFELLELSR 423 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + + D+ + ++S + +IL+N Sbjct: 424 IEGEAFSLNWQTVDIEPLIDEVFDMLGEKASAKQMTIEKKISGSPILAGEGARIKQILIN 483 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A GG +T+ V++ + + ++ G E +I + Sbjct: 484 LINNAIVYTHEGGTITVRVKEQAEQVVLEVEDTGIGLSKKEIP-RIFERFYRVDRARSRN 542 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V LA ++ +L + Sbjct: 543 SGGTGLGLAIVKHLAEAHRAKLSVDSEPGKGTTFRI 578 >gi|310817773|ref|YP_003950131.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309390845|gb|ADO68304.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 760 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 20/234 (8%) Query: 2 AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLS 56 K L + + + HD+ +P+ AI S +L + I S Sbjct: 513 RKQQEERLRQTAEFRERFMGVVSHDLRNPLNAILLSANVLLRTDGVHANHAKVARRIVAS 572 Query: 57 SMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106 + + + + + + + + R+ Sbjct: 573 GERMVRMIGELLDFTRGRLGGGIPVHLHPCHLRQLCRHVLEELEISHPGRELRLNAQGHF 632 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP----- 161 + A++L NL A P G V ++ D + + G Sbjct: 633 PGMWDPDRLAQLLDNLGKNALDYSPAGTPVDFTLLDCGDTLRIEVHNEGPPIPPALMPVI 692 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V +A + + + + L + Sbjct: 693 FEPFRRAVAGDAHPTSGLGLGLFIVQQIAQAHGGTVSVNSQEGQGTTFTVQLPR 746 >gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 764 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 57/240 (23%), Gaps = 29/240 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK + + H+I +P+ I +L+ E Q I + S Sbjct: 376 LAKERAEAADRAK--TDFLAGMSHEIRTPMNTILGMADLMLETDPTPVQRQYIEVFQSSG 433 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SW 104 + L + + + L + + DF+ + + Sbjct: 434 AMLLGIINDVLDLSKIEAGEVRLETVPVDMADFLNRTREIVAGRAAQKGLAFRIEQADHA 493 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162 + ++L+NL G Q + F++ G PE Sbjct: 494 PRRFLGDPVRLRQVLVNLIDNGIKFTESGTVRLAVGQAADPPGRLTFAVTDTGIGI-APE 552 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LE 214 QI + L + E S L Sbjct: 553 SQEQIFQRFTQADASTTRKYGGTGLGLAISRRLVELMGGEIRLESAPGQGSTFSFTVDLP 612 >gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 609 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ + + LE L + I +++I+ + I + + Sbjct: 380 FVANVSHELRTPLTTMKSYLEALAEGAWQDKAIAPRFIEVIQTETERMIRLVNDLLQLSK 439 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121 + + + + + + ++L N Sbjct: 440 LDSKDYKLNKSWVNFSEYFHKVIDRFELTKSENITFVRKIPKEAIFIEIDEDKITQVLDN 499 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P+GGK+T V++ +E I S+ G + F + + + Sbjct: 500 IISNAIKYSPQGGKITFRVRELADEIIVSVSDEGVGIPKADLAKVFERFYRVDKARSRKL 559 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + + L Sbjct: 560 GGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLP 597 >gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 608 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ + + LE L + I +++++ + I + + Sbjct: 379 FVANVSHELRTPLTTMKSYLEALAEGAWQDKAIAPRFIEVVQTETERMIRLVNDLLQLSK 438 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121 + + + + + + ++L N Sbjct: 439 LDSKDYKLNKSWVNFSEYFHKVIDRFELTKSENITFVRKIPKEAIFIEIDKDKITQVLDN 498 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 + A P+GGK+T V++ +E I S+ G + F + + + Sbjct: 499 IISNAIKYSPQGGKITFRVRELADEIIVSVSDEGVGIPKGDLAKVFERFYRVDKARSRKL 558 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + + L Sbjct: 559 GGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLP 596 >gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 875 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 56/247 (22%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRL 55 + + L L + + I H++ +P+ AI +L + + Sbjct: 611 TEELRAALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTEQPLTPTQREDVQ 670 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW 104 S L + +++ + + ++ V + Sbjct: 671 SINRNGRFLLHLINELLDLARIEAGHLNLELGSVDLCQVTAEVCDTVQTLLRNRPVTLRN 730 Query: 105 TGEKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSL 151 + +IL NL A RG + + S+ Sbjct: 731 ALPMVLPDVVADSDRLRQILFNLLSNAIKFTERGTITVSAQVLDEVNEDGKLCRYVAVSV 790 Query: 152 KINGNLARFPEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + S + + L R+ + I Sbjct: 791 SDTGIGIPHERQQDIFGEFVQIHGRRSRLGGTGLGLAITRKLVEAQGGRIWVDSIPGIGS 850 Query: 208 VLSALLE 214 + L Sbjct: 851 TFTFTLP 857 >gi|17232681|ref|NP_489229.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17134328|dbj|BAB76888.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 537 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 61/203 (30%), Gaps = 12/203 (5%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 H++ +PI I LEL+ E + + + + + + ++ Sbjct: 323 HELRTPITIIRGHLELMGNDPKEIQETLTIVIDELERMNRFVNDLMLLAKAERPDFLLLE 382 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGK 135 + E++ + RV + + +R ++ + A Sbjct: 383 TFDVCTFTEELFAKVKGLGDRVWQLEAVARGKIVGDRQRLTQAVMNLAQNATQHTNNTDT 442 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSHDIQFYYVILLAH 191 + + +++ F ++ G + F + + + V +A Sbjct: 443 IALGSMIHRDKISFWVRDTGTGIASADQYRIFQRFARATNSRRLSEGAGLGLSIVQAIAE 502 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 +K R+ + V + +L Sbjct: 503 AHKGRVTLQSELGEGSVFTIILP 525 >gi|310639848|ref|YP_003944606.1| sensor protein [Paenibacillus polymyxa SC2] gi|309244798|gb|ADO54365.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 498 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 64/233 (27%), Gaps = 27/233 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 + + + + H++ +P+ +IH LE+L + ++ + Sbjct: 268 ERELQMQMRR------FIADASHELRTPLTSIHGFLEVLLRGAASNPKQLQSALESMYGE 321 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 S + + L + + + L Q++ ++ Sbjct: 322 SKRMNKLVSDLLLLAKLDRTPELKLEDISLDALLLEMKPQLLMLAGTRKVFFDMTAGVRV 381 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQI 167 + + +++LNLF A V + + ++ NG E+ +I Sbjct: 382 LAEGDKIKQVVLNLFHNAVQHTDMEQGVIHVNLSAGKKLADIQIRDNGPGM-GKEQLERI 440 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + L Sbjct: 441 FERFYRGDESRTRSSGGAGLGLAITKSIVEAHGGSITAESTLGTGSIFKVTLP 493 >gi|301309034|ref|ZP_07214979.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300833060|gb|EFK63685.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 622 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 59/229 (25%), Gaps = 15/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + L + + + H+I +P+ AI +LL ++ + + LI++++ Sbjct: 385 LIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSELRQNYISLIKMNN 444 Query: 58 MS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 M + S + + V+ + Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLDACPDII 504 Query: 108 KIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +I +NL A + +++ + F + G E Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTIEAEEKMIKFYVSDTGCGIPKDELDNI 564 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + + L Sbjct: 565 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 >gi|257057098|ref|YP_003134930.1| signal transduction histidine kinase [Saccharomonospora viridis DSM 43017] gi|256586970|gb|ACU98103.1| signal transduction histidine kinase [Saccharomonospora viridis DSM 43017] Length = 498 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 12/203 (5%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYT 74 H++ +PI + LE+LD + ++L+ + + + F Sbjct: 281 HELRTPITIVRGHLEVLDPADPEDVANTVELVDDELGRMNRMVSDLLLLARSEQPEFLRP 340 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 VD I + D + E + + + ++ L A G Sbjct: 341 EPVDLAALTEAIFDKVTGLGERDWVLDSVARVEAVLDPQRVTQAVVALADNAVHHTSDGA 400 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAH 191 ++ + F + +G + F + G D + V +A Sbjct: 401 RIALGSDHGPGVVRFWVADSGVGVAEEDRERIFERFARGGSGRRSDGAGLGLSIVRAIAV 460 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + R+ + + + Sbjct: 461 AHGGRVTLDSEPGRGATFTVEVP 483 >gi|228945037|ref|ZP_04107398.1| hypothetical protein bthur0007_12030 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814706|gb|EEM60966.1| hypothetical protein bthur0007_12030 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 402 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALALITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|220909974|ref|YP_002485285.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866585|gb|ACL46924.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 701 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ I ++L + + + + + + Sbjct: 337 AVLSHELRTPLNPILAWSQMLQHRKFSQDKLAIGLETIERNAKLQAQLIDDLLDMARILR 396 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------------KILLNLFM 124 + + + + V + + E+ +++ NL Sbjct: 397 DKLVLNPVPLDLGRVIDAAIETVQPSAAAKSVVIEKHFSAVGQVSGDAARLQQVIWNLLA 456 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVESTIDSH 179 A +P GG+V I + + +K NG + + D + T Sbjct: 457 NAVKFVPEGGRVQIGLAQIGDRIQIQVKDNGKGIKPDFLPYVFESFRQADASTTRTFGGL 516 Query: 180 DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V + + + + D + LL Sbjct: 517 GLGLAIVRQIVEMHGGTITADSEGDGQGATFTVLLP 552 >gi|121727836|ref|ZP_01680903.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V52] gi|121629872|gb|EAX62286.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V52] Length = 588 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 67/236 (28%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 349 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 408 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 409 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 468 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGN--LAR 159 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 469 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPSVGI- 527 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 528 --ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 581 >gi|148269219|ref|YP_001243679.1| histidine kinase [Thermotoga petrophila RKU-1] gi|147734763|gb|ABQ46103.1| histidine kinase [Thermotoga petrophila RKU-1] Length = 493 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 54/240 (22%), Gaps = 31/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44 + M + I H++ +P+ AI LE++ + Sbjct: 246 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNTLEELDLGTLKEFLEVIMDQS 303 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 E + L + + + E + V V Sbjct: 304 SHLENLLNELLDFSRLERKSLQINREKIDLCGLIESAVNAIKEFASSHNVNVLFESNVPC 363 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161 E ++LLNL + + + +++ NG Sbjct: 364 PVEAYVDPTRIRQVLLNLLNNGVKYSKKDVPDKYVRVILDEKDGGVLITVEDNGIGI-PD 422 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + ++ E + K Sbjct: 423 HAKDRIFEQFYRVDSSLTYEVPGTGLGLTITKEIVELHGGKIWVESEVGKGSRFFVWIPK 482 >gi|12483718|gb|AAG53733.1|AF178425_3 KinC [Lactococcus lactis subsp. cremoris MG1363] gi|2182992|gb|AAC45385.1| histidine kinase [Lactococcus lactis subsp. cremoris MG1363] Length = 475 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 76/229 (33%), Gaps = 31/229 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLA 70 L S + H++ +P+ ++ LE L++ I+D + + + + L+ Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIDDKETASSFIRCFTNRNQSDDSVISDLLTLS 289 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------------QVSWTGEKIDLS 112 + + ++ ++ I ++ + Sbjct: 290 RMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDT 349 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166 + A+++ N+ A P+GG +TI V+ + + + S+K G ++F + Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITIYVETRERDVLISIKDEGMGIPKSDLLKIFDRFYR 409 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + S + + V + + + + S L Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458 >gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 419 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 63/229 (27%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60 +S+ L + + + H++ +P+ AI L+ + +I ++ Sbjct: 180 ERENAISADKLKSAFIANMSHEVRTPLNAIIGFSGLMATATSEEEKKMYTDIISENNERL 239 Query: 61 IIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107 + + + D+ L ++E + + + V + Sbjct: 240 LRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLNENPLVTLVCEAHLEPIM 299 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L NL A G + +E F + G E+ +I Sbjct: 300 MHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGI-PKEEQEKI 358 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + H R E +L Sbjct: 359 FSRFTKLDREMQGTGLGLTLSQTIVHNLGGRFGVESEVGKGSTFLFILP 407 >gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 624 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 18/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +AK + L + + H+I +P+ AI LL ++ D + LI ++ Sbjct: 392 LAKEKAEESDRLKSAFL--ANMSHEIRTPLNAIIGFSGLLPYIEDAEERDRYIALINHNN 449 Query: 58 MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + L+ + D + Q K + Sbjct: 450 ELLLNIINDVLDLSKIEAGHIELSPVWLNLSDLIDESCTECQRNVPEGVTLKTRYPAIPR 509 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L NL A + + G V IS + ++E S+ G + Sbjct: 510 LIEQDPMRIKQVLSNLVSNALKNTTQ-GYVEISYETGQSEARISVSDTGCGIPQEKLGVI 568 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + Sbjct: 569 FERFEKTDSFVQGAGLGLSICKSIVEHMNGRIEVISAVGEGSTFTVTFP 617 >gi|322833864|ref|YP_004213891.1| Osmosensitive K channel His kinase sensor [Rahnella sp. Y9602] gi|321169065|gb|ADW74764.1| Osmosensitive K channel His kinase sensor [Rahnella sp. Y9602] Length = 898 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52 A+ L L S + HD+ +P+ + E+L ++ Q Sbjct: 649 AETARLETEREQLRNSLLSALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQASQIRQQ 708 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKI 109 + ++ L R+ G + +I + + + +++ E + Sbjct: 709 VLSTTRLVNNLLDMARIQSGGFNLRKEWQSVEEITGSALRMLEPVLAHDNIEIDLPKEMV 768 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163 ++ + ++L+NL AH G + I + NG Sbjct: 769 LVNCDASLIERVLINLLENAHKYAGTGATIGIKATPLDEWLEMEVWDNGPGIPAGAEHTI 828 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + L Sbjct: 829 FEKFARGNKESAIPGVGLGLAICRAIIEVHDGRIWAENGPNGGARFRFRLP 879 >gi|320330256|gb|EFW86241.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 982 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|220927420|ref|YP_002502721.1| cyclic nucleotide-binding protein [Methylobacterium nodulans ORS 2060] gi|219952894|gb|ACL63282.1| cyclic nucleotide-binding protein [Methylobacterium nodulans ORS 2060] Length = 655 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL 52 + K + + AL L + I HD + + + +L+LL E MQ Sbjct: 266 LEKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRARLIDNAMQA 325 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R VD + + +++ + D + + + + Sbjct: 326 VEQGRKLTQQLLAFGRSQTLRPEVVDVTRLILGMNDMLKQSLRGDIGIVLDLAEDLWPVE 385 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLARFPE 162 + A++ + L A ++P+GG+ I S+ G+ P+ Sbjct: 386 VDPAQLQIALINLAVNARDAMPKGGQFRIKTENVTTHDGKVAQSVAISVSDTGHGM-SPD 444 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V A ++ + H + L + Sbjct: 445 VLARAFEPFFSTKEVGKGTGLGLPQVYGFAQQSNGSVRVTSEVGHGTTFTISLPR 499 >gi|116694841|ref|YP_729052.1| osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16] gi|113529340|emb|CAJ95687.1| Osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16] Length = 948 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 25/234 (10%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------EDEVMQLIRLSS 57 ++ S L + L + + HD+ +P+ ++ E + +++ R Sbjct: 702 LSMESERLRSSLLAAVSHDLRTPLTSLIGMAETMQRSDPGLAPSLAETVAAMLEQARRMR 761 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEKIDL 111 + L +L + ++ V +S Sbjct: 762 TMVVNLLDMAKLQGREVRMSKEWQSVEELVGASLAAMREALEHHRVVVVDLSRVPLVECD 821 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV 168 + ++L NL A P G ++ +S +E +++ +G + F + Sbjct: 822 AVLIERVLCNLLENAAKYTPAGTEIRLSAAPVDDEIRIAVEDDGPGVPKGKERQIFEKFT 881 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPE-----IIDDH--NVVLSALLEK 215 G ES + + + R+ E L + Sbjct: 882 RGERESATAGVGLGLAVCEAIVQAHGGRIWVEPAQRPDRPGGQAGARFLVALPR 935 >gi|324327074|gb|ADY22334.1| sporulation kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 801 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLP 795 >gi|308066930|ref|YP_003868535.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|297185563|gb|ADI24138.1| sensor histidine kinase kin99 [Paenibacillus polymyxa] gi|305856209|gb|ADM67997.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 758 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 12/221 (5%) Query: 5 ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIR 54 S L V L + + H+I +P+ + L+L + I + I Sbjct: 534 EELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQQNQVLNMKHNDIMMSELDRIN 593 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113 L +I K + F + + + + + +QV Sbjct: 594 LIVSEFLILAKPQAVHFQKKDVRYIVSDVISLLDSQAHLLGIIFNLQVTDEPALVYAEEN 653 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ +NL + ++ +GG +TI + ++ G E +++ + Sbjct: 654 QLKQVFINLLKNSMEAMSKGGIITIHLFLEGESVKIFIRDQGTGI-PAEMLSKLGEPFFT 712 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K L E + L Sbjct: 713 NKETGTGLGLMVSQRIIQSHKGTLDIESTEGEGTTALVQLP 753 >gi|317129754|ref|YP_004096036.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315474702|gb|ADU31305.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 475 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 73/239 (30%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRL 55 M K + S S I HD+ +PI I ++ + +D + + +I Sbjct: 236 MTKQLKQYRDSRR---HFISHISHDLRTPITYIKGYSAVMKDTVKDDKDDWKQNLNVIYK 292 Query: 56 SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + L L + + ++ + + R+ + Sbjct: 293 EATRMENLVSDLFLLTKLEEGKIKLEKEKVPVASWLKSIYESRALMFNQKNIKHRLNIQD 352 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +++ + + ++ + A P+ G++ +S+ + IFS++ G+ Sbjct: 353 ACKELIVFMDAYRLEQAIINIVENAIRHTPKEGEIELSLYKKSEQIIFSVRDTGSGINNK 412 Query: 162 E---KFTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V + + ++ S L Sbjct: 413 DLPHIWERFYKADTSRNRVINGGTGLGLAIVKEIVEAHGGKVKVASKVGEGTTFSIYLP 471 >gi|222053593|ref|YP_002535955.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221562882|gb|ACM18854.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 350 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 60/234 (25%), Gaps = 25/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + ++VA++ HD+ SP+ + ++ L + L+ Sbjct: 117 TEEKKEKRHREEIVAMMT----HDLKSPLTVLMGYVQALRNEDGTKVHVSLLPCLDEMDR 172 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------------ 103 LK + + + +GL D A+ + Sbjct: 173 SALKLLAMIEDVLDAYRLEVGLLQTTCSWCDLSAILEACCHDMAREASSRGVRLNHNIES 232 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +++ N+ A PR G+VT++ + ++ G + Sbjct: 233 GIPAMNVDGNQLSRVFANIIGNAVKFTPRKGQVTVNAWLGDEKLHVAVTDTGIGIPQKDL 292 Query: 164 FTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + ++ Sbjct: 293 PRIFNKYFRSKGANGFRGTGLGLTISKAIVEAHGGAIAVESAVGEGSCFTIVIP 346 >gi|29653714|ref|NP_819406.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His kinase A (phosphoacceptor) domain protein [Coxiella burnetii RSA 493] gi|153207222|ref|ZP_01945986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His Kinase A (phosphoacceptor) domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|154707337|ref|YP_001425050.1| phosphate regulon sensor protein [Coxiella burnetii Dugway 5J108-111] gi|165918708|ref|ZP_02218794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His Kinase A (phosphoacceptor) domain protein [Coxiella burnetii RSA 334] gi|212213135|ref|YP_002304071.1| phosphate regulon sensor protein [Coxiella burnetii CbuG_Q212] gi|212218190|ref|YP_002304977.1| phosphate regulon sensor protein [Coxiella burnetii CbuK_Q154] gi|29540977|gb|AAO89920.1| phosphate regulon sensor protein [Coxiella burnetii RSA 493] gi|120576710|gb|EAX33334.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His Kinase A (phosphoacceptor) domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|154356623|gb|ABS78085.1| phosphate regulon sensor protein [Coxiella burnetii Dugway 5J108-111] gi|165917643|gb|EDR36247.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His Kinase A (phosphoacceptor) domain protein [Coxiella burnetii RSA 334] gi|212011545|gb|ACJ18926.1| phosphate regulon sensor protein [Coxiella burnetii CbuG_Q212] gi|212012452|gb|ACJ19832.1| phosphate regulon sensor protein [Coxiella burnetii CbuK_Q154] Length = 252 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 24/228 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFM 67 + + + + H++ +P+ I LE L + ++ + + + Sbjct: 23 QLERIRSDFVANVSHELRTPLTVIRGYLETLLKKEVRDSKSYQKIFQQMYQHSARMETII 82 Query: 68 RL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L L + I +++ Sbjct: 83 DDLLLLSRLESDDHPTEEKMNVAVPEILKTLCADAERISGEKQHFIQLKAEPNLYISGSE 142 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 E + N+ + + P G++ + + +FS+ G +I + Sbjct: 143 EELKSLFSNIIINSVKYTPSKGRINVKWYRDDDHAVFSVVDTGIGIAKVHIP-RITERFY 201 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L E + + Sbjct: 202 RVDKARSRESGGTGLGLAIVKHVLMRHDGELHIESEPGKGSIFTCRFP 249 >gi|47564259|ref|ZP_00235304.1| sporulation kinase [Bacillus cereus G9241] gi|47558411|gb|EAL16734.1| sporulation kinase [Bacillus cereus G9241] Length = 801 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 K S L L + + H+I +P+ A+ ++LL E + ++ Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + ++ +S Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ N+ G E+ + + Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + ++ L Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLP 795 >gi|323698718|ref|ZP_08110630.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323458650|gb|EGB14515.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 688 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 62/244 (25%), Gaps = 33/244 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 +N M+ + LL + H+I +P+G I +LL E + + +I + Sbjct: 432 ENQLIQAQKMESLGLLAGGVAHEINTPLGIILGYAQLLQEDVEAGSQIHQDLAIIEKQTQ 491 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113 + + T S + + V + + Sbjct: 492 VCKKIVADLLGFSRQTQSAKREMCFNNSVMEAVSLVRHTLELDKVEIVTQLDDRYPIIYG 551 Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +NL + ++ G + + NG+ E +I Sbjct: 552 DPEKLKQVWINLLTNSRDAMGGQGGTILIRTRLDTPGGIVSLWVADNGSGI-AEEALKKI 610 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI---------------IDDHNVVLS 210 D + + + ++ + + V Sbjct: 611 FDPFFSTKAVDKGTGLGLSVSFGIIEDHGGDIHAASPVPEDFGFPPQARGGAEGGGTVFE 670 Query: 211 ALLE 214 L Sbjct: 671 VNLP 674 >gi|303326351|ref|ZP_07356794.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3] gi|302864267|gb|EFL87198.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3] Length = 464 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 20/224 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59 L A+ L + + H+I +P+ +I E D+ +++ + + Sbjct: 221 RKEKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGQRFPEGSDDREAAAVMVREVDRLNRV 280 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRER 115 + R + V + + ++I + S Sbjct: 281 ITDLIGLSRPSDVRPRPVCLENVVAHVMRLIRQDAEQRNVRLEYRTSRRVPNVLVDSERM 340 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + LLNL + A ++P GG++T+ + +K ++ G I D + Sbjct: 341 GQALLNLCLNALDAMPDGGRMTLVIAKAKRRVCLMVRDTGKGIDPAAL-AHIFDPYFTTK 399 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEI----IDDHN-VVLSALLE 214 + V + + + D H + L Sbjct: 400 GQGTGLGLAMVHKIVAAHNGEISVYSQLAGEDGHGETIFRLWLP 443 >gi|226324179|ref|ZP_03799697.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758] gi|225207728|gb|EEG90082.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758] Length = 391 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + N L S L S I HD+ +PI AI +E + + E M+ + + Sbjct: 145 LRDNAEEKLKSDRESKELISNISHDLKTPITAIKGYVEGIRDGVADTPEKMEKYIGTIYN 204 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102 + + +D+ + + + D V Sbjct: 205 KANEMDTLINELTLYAKIDTNRIPYNFAPLSVNDYFNDCAEDIEMELDSKNVEFGYFNYV 264 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161 + I + +++ N+ + + R + V+D + L+ NG Sbjct: 265 EGDQKIIADPEQLKRVINNIVSNSLKYMEREHGLINLRVKDVGDFIQVELEDNGKGIAAK 324 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ ++ + V+ ++ K Sbjct: 325 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEDHGGKIWATSREGVGTVMYFVIRK 383 >gi|75907566|ref|YP_321862.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701291|gb|ABA20967.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 576 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 75/229 (32%), Gaps = 17/229 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + ++ + L S I HD+ + + I +++LL +V+ + + Sbjct: 204 EAQLLRSQRLESIGTLASGIAHDLNNILTPILMAVQLLQMKLHEPQVQKVLNTLESNVKR 263 Query: 60 AIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 L+ F R G V + +IEQ+++ + Q +S + Sbjct: 264 GANLLRQVLSFARGIEGKKTIVPVRKLILEIEQIVQQTFSKSIICQTYIPENLWYVSGDT 323 Query: 116 ---AKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L+NL + A ++P GG + I+ K+ S++ G + Sbjct: 324 TQLHQVLMNLVLNARDAMPNGGILKITADNVVLSPQGKHYIKLSIEDTGLGIPAKIQKQI 383 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V+ + + + + + L Sbjct: 384 FEPFFSTKEVGKGTGLGLSTVLNIIDNHGGSINVQSTEGKGTRFQVYLP 432 >gi|116618820|ref|YP_819191.1| Signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097667|gb|ABJ62818.1| Signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 366 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELL-----DEVGIEDEV 49 + + + + L AL+ S + H++ +P+ + +ELL D+ + ++ Sbjct: 118 LTRILNRTID--RLQALISAQQQFVSDVSHELRTPVTIVKGHMELLNRWGKDDPEVLEDS 175 Query: 50 MQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106 ++ + + L VD++ + D+ + K + ++ Sbjct: 176 IKSSLAEVQRMETLINEMLNLTRAEQIPVDNVKEITDVGGTMHRVYDNFKMIHPDFSFTL 235 Query: 107 --------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 +IL+ L A ++ ++ + N ++ G Sbjct: 236 DDDLSTKARVKIRQDHMEQILIILADNAVKYSLDRHEIHFALSQTANRVEIGVQDFGEGL 295 Query: 159 RFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + F + + + L + E + + + L Sbjct: 296 KPEDAKRVFDRFYRVDKARSRAKGGTGLGLSIAQRLVEAYGGTIALESAEGSGSIFTVYL 355 Query: 214 E 214 Sbjct: 356 P 356 >gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 590 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 71/234 (30%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57 ++I + + + H++ +P+ I + E L + +E+ + + Sbjct: 347 QDITKQHRLEAMRKEFVANVSHELRTPLTTIKSYAETLLDGALEEAEISRQFTSVINDEA 406 Query: 58 MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108 + + + +D L ++ ++ + + ++ + E Sbjct: 407 DRMTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMDVNIKRKGQTIKANIPEEL 466 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++ + ++ N+ A+ P GGK+ I V+ ++ + K G + Sbjct: 467 PEVFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEYAEKMVKVTFKDTGVGIPKEDLPR 526 Query: 163 KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + + Sbjct: 527 IFERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISSELGKGTSVIIQIP 580 >gi|307825269|ref|ZP_07655489.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307733725|gb|EFO04582.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 885 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 23/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQ 51 N +++ + L+ + S I H++ P+ AI + + L I D+ Q Sbjct: 650 NELAHVTRLGLMGEMASGIAHEVNQPLSAISSYTQVSLNLINIEPPDLARLTEILDKTQQ 709 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKID 110 + +F++ D + + + + + ++ Sbjct: 710 QALRAGRIIHRMREFVKSHAQKRSVADVNNLIHECAGLCVGELKQNNIKLTFELKNNLPP 769 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFP 161 + ++ +I + + +L + N+ +K NG Sbjct: 770 VHVDQIQIEQVIINLIRNSVDALKNLPEKQQRQLTISSRLTLNNDIQVKVKDNGAGI-DE 828 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ +I+ + D + L ++ L L Sbjct: 829 DQKQKILTPFYTTKADGMGMGLSITRSLVEAHEGTLNFNSKAGKGTTFYFTLP 881 >gi|283850505|ref|ZP_06367793.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283574076|gb|EFC22048.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 836 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + LVA+ L + + H+I +P+G I ELL + + + + + + Sbjct: 596 RRMREKMRQTEKLVAVGKLAAGLAHEINNPLGVISCYAELLRQSLTDPQAREDLAVIERH 655 Query: 60 A-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEK 108 A L F R G D + I ++ + + + Sbjct: 656 AVMAKKVLRDLLDFARPRQATPGPCDLAALVASISRIFDIQAQSRRVRLSSRASAGLPLA 715 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFT 165 + ++L NL + A ++ + + NG PE Sbjct: 716 NADASALEQVLSNLLLNALDAVTPDAGEIVLEAGAGPDDRTVYLRVADNGPGI-APEDAP 774 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V L + R+ E V + L Sbjct: 775 RIFDPFFTTKEAGRGSGLGLAVVYGLLRDMNGRIEVENS--GGAVFTVTLP 823 >gi|297568040|ref|YP_003689384.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296923955|gb|ADH84765.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 624 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 64/244 (26%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 K L + + A+ L + HD + + I EL L E ++ I Sbjct: 234 EKMAAQLLQAQKMEAVGTLAGGVAHDFNNILTPIIGYCELAKMQLSPAEQEKMQVEEILQ 293 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS--- 112 ++ A ++ + + L I + F+ + + + Sbjct: 294 AARRARDLVQQILTFSRRQEQERVRLELQPIIKENIKFLRSSLPSTIEISQDLAADCGQV 353 Query: 113 ----RERAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLK 152 + +++LNL A ++ ++ N ++ Sbjct: 354 LADLTQIQQVILNLCTNAAQAMEEQGGVLEINLRRVEIGDSQQLAGEPLPPGNYACLTVS 413 Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G +I + + + V + + RL V+ Sbjct: 414 DTGVGMDGV-TRQRIFEPYFTTKEQGKGTGLGLAMVHGIVRGHGGRLAVYSEPGKGTVVR 472 Query: 211 ALLE 214 L Sbjct: 473 VFLP 476 >gi|229004155|ref|ZP_04161956.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4] gi|228757016|gb|EEM06260.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4] Length = 466 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 57/234 (24%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA ++ + + H++ +P+ I E + + + + QLI Sbjct: 228 MANSLEMEDVKRK---EFSANVSHELRTPLSYIKGYSEAILDGVAKGQQQSKFTQLIHRE 284 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + ++ + + Sbjct: 285 AGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPD 344 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164 ++L NL A + G ++I ++ + +K G Sbjct: 345 IIVTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLKKKDRQCELKIKDTGIGIDAEHLEQ 404 Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + H + E + L Sbjct: 405 LGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLP 458 >gi|224541343|ref|ZP_03681882.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM 15897] gi|224525780|gb|EEF94885.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM 15897] Length = 457 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 26/233 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 +AK S + H+ +P+ AI +L + +I + Sbjct: 219 LAKQETIRQQ-------FISDVSHEFQTPLTAISGFATILKNENLTDEQRKKYADIILFN 271 Query: 57 SMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S K M + + + + + Sbjct: 272 SNRLSHLSKNMLQLTLLDGEDTALDKTEFPLIEQLNRVIEMEDNAALSKDIEIEFIHPKK 331 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 ++ +NL A G VT+ V+ + E + G Sbjct: 332 EFIIEADESRMEQVWINLLSNAIKYTNEHGVVTVEVRRTPTELQVRFEDTGVGMSQDAIS 391 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + TI+ + + V + + ++ E +D V + + Sbjct: 392 HIFERFYRQDKSRTIEGNGLGLSIVKRIIDLHHYKIDVESQEDVGSVFTVYIP 444 >gi|261404373|ref|YP_003240614.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261280836|gb|ACX62807.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 543 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 9/222 (4%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQL 52 M + ++ L + I H++ +P+ + L+L L + ++ Sbjct: 315 MKRTEEVLRNTEKLVFAGQVAVSIAHEVRNPLTTVKGMLQLANKDAALRHYDLIMSELER 374 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 L +I K F + L + + + + + Sbjct: 375 ANLMVGEFMILGKPQAAVFKLENCGEILEEVLHLFAIQASLGGIKMTQCFGRNATILCDR 434 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ LN+ A +LP GG + I + + NG+ + +I + Sbjct: 435 NQIKQVFLNILKNAMEALPYGGNIHIQMDVEDGYQRVTFTDNGSGM-TEDVLRRIGEPFH 493 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + V + + R++ ++ + L Sbjct: 494 TTKPDGNGLGIMIVQRIMESHNGRIVIRSEEERGTSVEIRLP 535 >gi|296502578|ref|YP_003664278.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|296323630|gb|ADH06558.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 357 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 240 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 352 >gi|228909460|ref|ZP_04073285.1| hypothetical protein bthur0013_36120 [Bacillus thuringiensis IBL 200] gi|228850237|gb|EEM95066.1| hypothetical protein bthur0013_36120 [Bacillus thuringiensis IBL 200] Length = 510 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQQWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ RL + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 500 >gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter sakazakii ATCC BAA-894] gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894] Length = 973 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 71/240 (29%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 477 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVDRLVTAM 536 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 S+ + LK + ++ + + E + ++ + Sbjct: 537 HNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYQPLVVRKQLGLYCFI 596 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + V + F ++ G Sbjct: 597 EPDVPMSLLGDPMRLQQVISNLLSNAIKFTDI-GCIILHVGTQGDYLCFRVRDTGVGIPA 655 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + + Sbjct: 656 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTEPGMGSQFTIRIP 714 >gi|109896557|ref|YP_659812.1| osmolarity sensor protein [Pseudoalteromonas atlantica T6c] gi|109698838|gb|ABG38758.1| periplasmic sensor signal transduction histidine kinase [Pseudoalteromonas atlantica T6c] Length = 432 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 9/220 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 MAK I D ALL + I HD+ +P+ I + E+L + E V + ++ Sbjct: 212 MAKGIK---QLEDDRALLTAGISHDLRTPLTRIRLATEMLPEAQDWLKEGIVNDIEDMNE 268 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + VD + D QV + + + + Sbjct: 269 IIDQFINYVRQDQQESMVGVDVNDLIRDAVQVRNIEEHHNIHLHLKPIPTACMRRVALKR 328 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES 174 +L NL A ++ ++N FS++ G + F G+ Sbjct: 329 VLDNLIENAFRYGSEDIEIRSGYDKARNLLFFSIRDFGPGIPDTQIEGLFKPFTQGDKAR 388 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + ++ S + Sbjct: 389 GSLGSGLGLAIIKRIVDMHSGEVTLKNHPEGGLIASIFIP 428 >gi|330995065|ref|ZP_08318982.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|332879513|ref|ZP_08447208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|329576641|gb|EGG58144.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|332682479|gb|EGJ55381.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 491 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56 M KN+ +D S + H++ +PI AI SL+LL++ G+ E +L R Sbjct: 256 MLKNVT-EFQELDTAKTTFISTVSHELKTPISAIMMSLQLLEDKRVGGLNPEQEELSRSI 314 Query: 57 SMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSW 104 ++ L + + +G + + ++I+ I ++ +V+V + Sbjct: 315 KENSERLLSITGELLNMTQVESGKLQLKPKITKPIELIDYAIKANRVQAEKFGIQVEVDY 374 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160 + L + KI L + ++ + Q N ++ G Sbjct: 375 PEKIGKLFVDSEKIAWVLTNLLSNAVRYSSEAGRVVIGARQQDDNHIAMFVQDFGKGIDP 434 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + V + +L Sbjct: 435 RYHESIFEHYFRVPGTKVQGTGLGLSISRDFVEAHGGTLTVDSELGKGSVFTMVLP 490 >gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 807 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 20/228 (8%), Positives = 55/228 (24%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI L+ ++ E + ++ ++ Sbjct: 580 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSGLVSETEDPDERKEYISIVEANNN 637 Query: 59 SAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + G L Q+ + Sbjct: 638 LLLQLISDILDLSKIEAGTFDFMVGDINVNQLCTDLVTSLQMKLKPGVELVFDRNLPEYH 697 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L N + +G + F + G ++ Sbjct: 698 IVSDRNRLYQVLSNFVNNSVKFTFKGSIKVGYEKVDGMRLRFYVSDTGLGIAPDKQKAVF 757 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + + + +L Sbjct: 758 DRFVKLNSFVPGTGLGLSICKSIIQQLGGTIGVDSEEGKGSCFWFILP 805 >gi|301060210|ref|ZP_07201077.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300445722|gb|EFK09620.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 680 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-- 57 K + L AL L + I HD + + + +++L+ + E ++ Sbjct: 294 EKADQLRKRTQKLEALGTLSAGIAHDFNNILAVLLGNVQLVMDDVPEGSRVRNNIDEMTK 353 Query: 58 ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKI 109 L F R + + + + + I + + T + Sbjct: 354 AILLARDMIKQILTFCRQGEQSRSPLSLTPVVKESVKFLRSSIPATIEIIDHIEETDLVM 413 Query: 110 DLSRERAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKI 153 + +++++NL A ++ K V + Sbjct: 414 ADPTQISQVMMNLGSNAAYAMDNRTGILELTLKNVTIDEHHKDRFRVPFEGRYVKMKFRD 473 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G+ +++ D + + + V + + + E V Sbjct: 474 TGSGMPSY-VLSRLFDPYFTTKPEGKGSGMGLAVVHGIVESHGGVIWVESEPGKGAVFKM 532 Query: 212 LLE 214 L Sbjct: 533 LFP 535 >gi|222100696|ref|YP_002535264.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359] gi|221573086|gb|ACM23898.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359] Length = 473 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 58/238 (24%), Gaps = 30/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60 + M + I H++ +P+ AI E + E D + + + + + Sbjct: 230 ERLKRIDRMK--TEFVANISHELRTPLTAIKAYTETMYNSLEELDTDTLKEFLEVVLDQS 287 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------T 105 + ++ + + + I + + + Sbjct: 288 NHLENLLNELLDFSRLERKALQIKKEKTNICELLESAVGAIKEFAASQGVKVFLEKKVPC 347 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPE 162 E ++LLNL + +N + ++ NG Sbjct: 348 FEAEVDPTRMKQVLLNLLSNGVKYSKKDEPEKYVKVVLDKDENGILIVVEDNGIGI-PEH 406 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + R+ E + + Sbjct: 407 AREKIFEQFYRVDSSLTYEVSGTGLGLAITKEIVELHGGRIWVESEEGKGSRFFVWIP 464 >gi|196231544|ref|ZP_03130402.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224397|gb|EDY18909.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 534 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 57/238 (23%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 + + L AL + + + HD + + I ELL + Sbjct: 161 LRTTQQTVVQQERLRALGEMVTGVAHDFNNALSMILGYAELLQHECRKHVAADKFVDYAH 220 Query: 56 --------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ +F R + V Sbjct: 221 TIVTASLDAAEIVNRLREFHRPTEPGESREPLPFNAIVEQAVTFTRPRWSAETIARGMPI 280 Query: 108 KIDLS-----------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 ++ + E ++L NL A ++P+GG++ + + ++ G Sbjct: 281 EVMMELSPIPPLRGNAPELREMLTNLIFNAVDAMPQGGRILLRTRAVGARIELAVVDTGT 340 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + E + Sbjct: 341 GMTEEVRRRCLEPFFTTKGDRGSGLGLSMVYGIVERHEGTVTIESTLGRGTTFTFSFP 398 >gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 646 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 150 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 209 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 210 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 269 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 270 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 328 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 329 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 387 >gi|159901176|ref|YP_001547423.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894215|gb|ABX07295.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 413 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 61/236 (25%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 +A++ L + I HD+ +P+ A+ +E L + ++ + Sbjct: 174 LAQSAERQHELEQSRRDLIAAISHDLRTPLTAVRAMIEALADGVVTEPAMQQRYLNSANS 233 Query: 56 SSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + D + Q V R V+ Sbjct: 234 QLTNLSTLVDDLFEMAQLDAGVLRLELERASLGDLISDTLSNLQPHAAAHGVQLRGSVAP 293 Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ + + +L NL A P G + I Q + G + + Sbjct: 294 EADLVLMNAPKLQRVLYNLISNALRHTPSDGTIAIQAQTINQTVHVEVSDTGEGIQPDDL 353 Query: 164 FTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E H L+ Sbjct: 354 PHIFERTYRGEKSRSRDYGGAGLGLAIVRAIVEAHGGNVWVESQPQHGARFVFTLQ 409 >gi|30020096|ref|NP_831727.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|29895646|gb|AAP08928.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] Length = 348 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 114 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 170 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 171 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 230 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 231 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 290 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + E + + Sbjct: 291 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 343 >gi|194336297|ref|YP_002018091.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308774|gb|ACF43474.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1126 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 68/243 (27%), Gaps = 31/243 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQLI 53 ++ L M+LV L I HD + + I ++E+ + ++ Sbjct: 740 QSALTQLQKMELVGQLAGGIAHDFNNMLAVIIGNIEMAMDQEAAYEEPLPFNLKNILNAA 799 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 S+ L F R ++ + + V+ I + + + + Sbjct: 800 TRSAHLTRQLLAFARKQPVMPLVLELNTMVETMLSVLRRLIGENITIVWIPDTHRCLVKV 859 Query: 114 ER---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKIN 154 + +IL+NL + A ++ + + S++ N Sbjct: 860 DPSQIDQILVNLCINARDAIAGIGKITIQIGRLCEKKTLVPPLHPCKIVGDYVTLSVRDN 919 Query: 155 GNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E I + + + V + +N L + Sbjct: 920 GCGI-EKEHLPHIFEPFFTTKEPGKGTGLGLSTVYGIVKQNNGCLDYKSEPGKGSTFKIH 978 Query: 213 LEK 215 L + Sbjct: 979 LPR 981 >gi|291518265|emb|CBK73486.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain [Butyrivibrio fibrisolvens 16/4] Length = 384 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLI 53 + N L + AL+ S I HD+ +PI AI E + + + + + Sbjct: 135 LKNNAKDRLEDEAEQRALI-SNIAHDLKTPITAIKGYAEGMLDGVADTPEKQEKYIRTIY 193 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQ 101 ++ + + + T + + I +D Sbjct: 194 NKANEMNTLINELTLYSNIDTNKIPYNFQKLNLSSYFTDCIEELGMDLENQHIRLDYSNF 253 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLAR 159 V I + +I+ N+ + + I V+D + + NG Sbjct: 254 VDPEVLIIADPEQLGRIIHNIVSNSVKYMRADVPSRIGIIVKDVGDFVQIEISDNGKGIA 313 Query: 160 FPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + I V + ++ ++ ++ + ++ Sbjct: 314 TQDLPYVFDRFYRADTSRNSAAGGSGIGLSIVKKIVEDHGGKIWVTSKENQGTTMYFVIR 373 Query: 215 K 215 K Sbjct: 374 K 374 >gi|156740839|ref|YP_001430968.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232167|gb|ABU56950.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 722 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLEL-----------LDEVGIEDEVMQLIRLSSMSAIIRLKF-- 66 S + H++ +P+ ++ ++L L + + Q+ +LS + + Sbjct: 496 SMVSHELRNPLHTLNGFVKLVLQGRAGPLTALQKDFLSMADEQIEQLSGRVSELLEYNRF 555 Query: 67 ----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + L + G + + + + ++ ++L NL Sbjct: 556 KAGRLALHPDVGDLSLLIAGTVSRLSLQAEQQQLSLVNETPHLPLCRFDNQRIGQVLTNL 615 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179 A + P GG + IS E + G E F + Sbjct: 616 IENAMKATPAGGTIKISADVHDQEVWVRVSDTGIGIPSSELGKIFQRFYQVAKHRRAQGT 675 Query: 180 --DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + + L Sbjct: 676 HMGLGLAICQQIVEGHGGRIWVESEEGVGTTFTFTLP 712 >gi|324327542|gb|ADY22802.1| sporulation kinase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 510 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 63/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHLDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + V+ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500 >gi|310822109|ref|YP_003954467.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309395181|gb|ADO72640.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 713 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV-------MQLIR 54 L + L +L + I H+I +P+G + E +L ++G + I Sbjct: 461 ETQLLRAEKLATVGVLAAGIAHEIGTPLGVVRGRAEYVLGKLGPAHPQAAGVGVIIDQID 520 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 S + L F RL V L D E + + +++ L+ Sbjct: 521 QVSRTIRQLLDFSRLQPAVARPVALSTLLRDVYELLHLEAERQQVVLELDLPEGLPLLAA 580 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISV----------QDSKNENIFSLKINGNLARFPEK 163 + ++ L + + + S++ +G + Sbjct: 581 DPDQLQQVLVNLVLNACDACSAGGKVHLAAAAPDGSSMGAWGFVTLSVRDDGCGIPVESR 640 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E H + L Sbjct: 641 NQVFDPFFTTKKRGQGTGLGLAIVAQIVRNHGGRVELESEPGHGTCFTLLWP 692 >gi|300088023|ref|YP_003758545.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527756|gb|ADJ26224.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 723 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSS-MDLVA------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 A+ + + M L A ++ S I H+I +P+ + +LL + E ++ Sbjct: 484 AETERRKMEARMALAAHQASIGVMASGIAHEINNPLTGVIGFSQLLAQRPDLPEDIRDDA 543 Query: 55 LSSM--------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWT 105 L F D + + + + + + + + Sbjct: 544 AIIDSGAQRVAGIIRRLLTFADPRPPRQEPADLNNLVSETLKSMAAELEHHGIELILELS 603 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLAR 159 E + + ++I + ++ ++T++ + + NG Sbjct: 604 PELPQVITDASQIQQAFLNIIKNAVTELHKLEGAKRLTVTTEVRGRMTAVTFADNGPGIP 663 Query: 160 FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + N + + V + L Sbjct: 664 PDNLPRIFDPFFTTREVGQGTGLGLSVCHGIITRNSGCITAANRPEGGAVFTVELP 719 >gi|224535913|ref|ZP_03676452.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM 14838] gi|224522473|gb|EEF91578.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM 14838] Length = 1344 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K +S M + + I H++ +P+ I L+ L + + + Sbjct: 817 LDKEKQEEISQMKIRFYV--NISHELRTPLTLIVAPLQELLSRISGHWEHEQLLYIQRNT 874 Query: 61 IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L + Y + + + + ++ Sbjct: 875 NRLLHLVNQLMDYRRAELGIFELRLVSANAYKRVLNSFMNYESLSKKKDIDYNFYTELQD 934 Query: 115 RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + + A G +T+ + + + + G EK Sbjct: 935 KELLFDENYLDLIVNNLLSNAFKYTEEGESITVKLYQEAGDLVLQVTDTGIGI-PKEKQE 993 Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + S + I V L + R+ E S L Sbjct: 994 KIFERFYQVESGREGSGIGLSLVQRLVELHHGRIELESEPGKGSTFSIYLP 1044 >gi|218233444|ref|YP_002368453.1| sporulation kinase A [Bacillus cereus B4264] gi|218161401|gb|ACK61393.1| sporulation kinase A [Bacillus cereus B4264] Length = 510 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ RL + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 500 >gi|119491630|ref|ZP_01623502.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453359|gb|EAW34523.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 397 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 20/225 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------- 62 L + S + HD +P+ I S ELL + Q + Sbjct: 161 EQHQLTSEFVSMMSHDFRNPLSTILLSTELLRDWEQSLSKEQKSSIFQRIRSAGKSLVQL 220 Query: 63 -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115 + + + + V E + + QV + Sbjct: 221 LDEVILVGQADVERLECLPTPLDLESFCQQLVEEARLEASSQHQVELKMQGEFAETLWDE 280 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD 169 I NLF A P+GG + + V N IF L +G + F Sbjct: 281 SLLRHIFSNLFANAIKYSPQGGIIRLEVMAQDNIAIFDLIDHGIGIPPHDLVKLFQAFHR 340 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + V + + E + S L Sbjct: 341 ASNVGKISGTGLGLAIVQRCVEAHGGEISVESEVGVSTTFSVQLP 385 >gi|269838412|ref|YP_003320640.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787675|gb|ACZ39818.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 1448 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 69/250 (27%), Gaps = 38/250 (15%) Query: 1 MAKNICFNLSSMDL-----------VALLCSRICHDIISPIGAIHNSLELL----DEVGI 45 +A + + L A L S H++ +P+ + +LL + + Sbjct: 1187 LADRAALAIENAQLYREAQSAVRVREAFL-STASHELKTPLTTVKGYGQLLLRFLKQPTL 1245 Query: 46 EDEVM--------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQV 89 + E + L R+ G L EQ Sbjct: 1246 DREHLIKLATHLRDQTDRFETLVNDLLDVSRIQQGRLALRPQPTELTELARSVLARFEQS 1305 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 + A + + ++L NL A P GG+V +SV+ +E Sbjct: 1306 PDRTPAHRLVLDAPEPIHGVWDPVRLDQVLTNLISNALKYSPDGGEVRLSVRRHGDEAEL 1365 Query: 150 SLKINGNLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ G E Q+ + + + + + ++ + E + Sbjct: 1366 AVSDEGIGISASE-QAQLFQPFSRTVRARLEMGGTGLGLFISRQIVEQHGGTITLESTEG 1424 Query: 205 HNVVLSALLE 214 + L Sbjct: 1425 VGSTFTVRLP 1434 >gi|229197751|ref|ZP_04324470.1| hypothetical protein bcere0001_32890 [Bacillus cereus m1293] gi|228585696|gb|EEK43795.1| hypothetical protein bcere0001_32890 [Bacillus cereus m1293] Length = 516 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 340 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 341 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + V+ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 506 >gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] Length = 1342 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 829 NISHEFRTPLTLIVSQLEMLMERNDIQPLVYNKLVNIHRNTLRMKRLITELLDFRKQEQG 888 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124 + S + D + A K++ + + E + K++ NL Sbjct: 889 FEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVVQLEKVIYNLLS 948 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181 A GG V++SVQ+ +N + + G + F + + I Sbjct: 949 NAFKYTSLGGTVSLSVQEYENSVVILISDTGIGIAEKSLDKIFDRFYQVDSTDNQKGTGI 1008 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ ++ L Sbjct: 1009 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1041 >gi|206976128|ref|ZP_03237037.1| sporulation kinase A [Bacillus cereus H3081.97] gi|206745582|gb|EDZ56980.1| sporulation kinase A [Bacillus cereus H3081.97] Length = 510 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + V+ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500 >gi|220918716|ref|YP_002494020.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956570|gb|ACL66954.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 523 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 78/230 (33%), Gaps = 18/230 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55 + + L + + A+ L + H+I +P+G I +L+ + + E ++LI+ Sbjct: 282 EREVSRRLFHAEKMSAVGQLAGGVAHEINNPLGGILAFAQLMSREERSPEDMESLRLIQD 341 Query: 56 SSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108 ++ A ++ + VD + D ++ + + V Sbjct: 342 AANRAKRIVESLLRFSRRPREEERGPVDLRQVVDDALFLLSPQLRAGRFEVVRRFEPAVA 401 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 I + ++++NL + A ++ G VT++V + S+ G + +I Sbjct: 402 IGNGNQLQQVVVNLLVNALQAMGDRGTVTVAVGPAAPGRLRLSVADTGPGV-PEDAALRI 460 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLE 214 + + + + + E+ + E L Sbjct: 461 FEPFFTTKPEGQGTGLGLSICYQIVEEHGGTIRLEQPGPHRGACFVLELP 510 >gi|85860827|ref|YP_463029.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85723918|gb|ABC78861.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 506 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 67/228 (29%), Gaps = 22/228 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L + + H+I +P+G+I + + L +E +++ + Sbjct: 284 LEREKSMMLEE------MAPVLAHEIKNPLGSIKGAAQYLATEIDSEENRKILNVIIEET 337 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 M Y +E +++ +++ + Q+ +E Sbjct: 338 DRLNGVMSQFLNYAKPYRYEKTEQKVEPMLQKILSLVEARQIIDRVAIKKEIQENLPAIR 397 Query: 116 ------AKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++LN+ A ++P GG ++++ ++ G + Sbjct: 398 IDSEKIMQVILNIVFNAIEAMPEGGTLTLGARRIEKENREGIEIMVRDTGKGIAREDLKN 457 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I + + + + + + D L Sbjct: 458 -IFKPFYTTKERGVGLGLAICNRIVRSHGGEIKVKSFVDKGSTFRIRL 504 >gi|89897548|ref|YP_521035.1| hypothetical protein DSY4802 [Desulfitobacterium hafniense Y51] gi|89336996|dbj|BAE86591.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 748 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIE--------------DE 48 + + + A LL S + H+I +P+ + E L + E Sbjct: 510 EARMIETDKMAAIGLLASGVAHEINNPLAVVAAYSEDLLDRLDEEDAAPSQEEIKLGFKT 569 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105 V++ I L F R + +D I ++E + Q + Sbjct: 570 VLEQIVRCKQITAQLLGFARKRDSGSDLIDIGIASAQTLGLLEHKARQKHLHLHFQGEDS 629 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + E +++LNL A + G + + + F ++ G + Sbjct: 630 LFALGNENEWQQVVLNLVTNALDASAEEGIIELRSYREGPKIQFIIQDYGEGI-PQDHLK 688 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + Y + + ++ E + ++ L Sbjct: 689 KVFDPFFTTKSLGQGTGLGLYVSYGIIAKMHGEMILESTEGQGTKVTISLP 739 >gi|147675602|ref|YP_001217458.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O395] gi|262167886|ref|ZP_06035586.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae RC27] gi|146317485|gb|ABQ22024.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O395] gi|227013823|gb|ACP10033.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae O395] gi|262023613|gb|EEY42314.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae RC27] Length = 597 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 67/236 (28%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGN--LAR 159 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPSVGI- 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + + + + + + H + L + L + Sbjct: 537 --ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590 >gi|326391417|ref|ZP_08212954.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325992552|gb|EGD51007.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 66/219 (30%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + S I H++ +P+ + + +E + + E ++ + + I +K + Sbjct: 242 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWEPTHERLKSLNEEVLRLINIVKDLETLN 301 Query: 72 GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + + + + + + A++ + Sbjct: 302 KFESDMLKLNKIKFDVSELVKNILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ GGK+ I + +F ++ NG + F + G Sbjct: 362 NLISNSNKYTLVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 421 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ E + + + Sbjct: 422 TGGSGIGLSIAKAIVLAHGGKINVESEINKGSKFTVKIP 460 >gi|323698795|ref|ZP_08110707.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323458727|gb|EGB14592.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 410 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 62/236 (26%), Gaps = 32/236 (13%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVMQLIR-- 54 + + +L + H+I +P+ +I E L + ++++ Sbjct: 172 QAERMATVGVLAEGVAHEINNPLTSIRGFAEALYGHLDRLGVCLKDGEPCTDLLETFEEY 231 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------- 102 + + S++ + +I + + Sbjct: 232 LDIVLKECNRCSEIVHNLLSFGHRDVRAMSIVNINNIILNCLKLLHPRLSILPSGIIKLA 291 Query: 103 --SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + E ++ LNL + A + G + IS + + + G Sbjct: 292 LSEEEPCVMGHPGELMQVALNLILNALYEVRDIGTIDISTRVKGRMVLLRVSDTG-GGFA 350 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + I + ++ + V +L Sbjct: 351 PEDVDKLFEPFFTTKPAGQGIGIGLSTCYNIIMKHGGEITASSEPGEGAVFEVILP 406 >gi|320107337|ref|YP_004182927.1| integral membrane sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319925858|gb|ADV82933.1| integral membrane sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 387 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 + +NI + L L + + H+I +P+ +I + +L + E + ++ Sbjct: 146 LHQNIERLKKTERLTAAGQLSASLAHEIRNPLASISGAAGILTRGQASPESQAECLDILT 205 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKI 109 S L ++ ++V + + Sbjct: 206 KESQRLNKLLTNFLTFARPRLPRFQATLPSEMIYSVAALAQHVAGEKGVALEVETSSDAR 265 Query: 110 DLSRERAKILLNLFMV---AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ + +I L + A + P G V I + G+ E+ + Sbjct: 266 EIDCDPEQIKQLLLNLLLNAIQATPNEGTVLIRTHFIVKALQVEVCDEGSGIAPEER-DR 324 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + +A ++ L + L Sbjct: 325 IFEPFFTTKENGTGLGLAIAANIASQHGGTLTCRANIGGGAIFRMELP 372 >gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 971 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50 + + L A LL S H++ +P+ + N++ L + ++ Sbjct: 711 LRDAAVRAAENERLAATGLLTSGFAHEVRNPLNGLMNAMLPLRESILGSQVDPDTTRAML 770 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTG---SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + + + V+ L V+ I D V + + Sbjct: 771 DVMEECGTRIRHLAESLLSFVRTSDRLVPVNLGASLDSTLSVLAWKIPPDVLVVRDYQCD 830 Query: 108 KIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ +NL A ++ G++ IS + + S+ G PE Sbjct: 831 VPITGDPGSLNQVWVNLIDNALRAVGDKGQLRISTEHDGATAVVSITDTGTGI-KPEDME 889 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + L Sbjct: 890 RLFQPFFSTRAAGEGTGLGLALCRRIVLRHGGLIQLTSEWGKGTRCEVRLP 940 Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 65/251 (25%), Gaps = 40/251 (15%) Query: 2 AKNICFNLSSMDLVALLCS-------------RICHDIISPIG----------------- 31 A+ ++ L A L + + H++ +P+ Sbjct: 293 ARTQELVEANSKLAAALDTQKELIRLKSEFFDNVSHELRTPLTLILLSLESLLQRDPSAY 352 Query: 32 --AIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV 89 ++ L ++ +++LI A + +RL + L L +V Sbjct: 353 PDSVRQHLATMERSA--HRLLKLINNLLDLAQMEAGKLRLRYQAVELHSLLTSLLSPFRV 410 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 + + + + G + NL A +G V + V + + Sbjct: 411 MAEKKGLTLTLVGQAVGPIHGDVERIEVVFQNLVSNALKFTQQGS-VQVRVSEDSSSVFV 469 Query: 150 SLKINGNLARFPE---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ G + F + + I V + + + Sbjct: 470 EVEDTGPGIAPQDIDVIFDRFAQADSTGTRRFGGTGIGLALVKETVDLHSGSIRVSSVVG 529 Query: 205 HNVVLSALLEK 215 L K Sbjct: 530 KGATFRVQLPK 540 >gi|163743303|ref|ZP_02150684.1| phosphate regulon sensor histidine kinase, putative [Phaeobacter gallaeciensis 2.10] gi|161383491|gb|EDQ07879.1| phosphate regulon sensor histidine kinase, putative [Phaeobacter gallaeciensis 2.10] Length = 346 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 17/239 (7%), Positives = 63/239 (26%), Gaps = 27/239 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 +I + + + + H++ +P+ A+ +E L + D + +++ + Sbjct: 108 DITDREQASQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDAPARDRFLTIMQGEAN 167 Query: 59 SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + A + ++ + E Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAEAAEVQLILEIPEEPT 227 Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + ++ + ++ G + NG Sbjct: 228 LVTGDPDQLQQVFTNLVENAIKYGGDQVTLRLRTRDRDPAVRAAAVRVEVIDNGAGIDPV 287 Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + + ++ R+ E V + +L + Sbjct: 288 HLPRLTERFYRVDTHRSREQGGTGLGLAIVKHIINRHRGRMRVESSAATGTVFTVILPR 346 >gi|320354669|ref|YP_004196008.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123171|gb|ADW18717.1| multi-sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 608 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 76/228 (33%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + KN + + AL + +++ H I +PI AI + LL E ++ + + + Sbjct: 381 LQKNKDLLVEAERYSALGHMAAQLAHSIRNPITAIGGTARLLSRKIDNKEWLRFLGMMAG 440 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTGE 107 A K + F + V + +I + Sbjct: 441 EAEKIEKTLEDLFSFVDQVKPEREKIRLIPLIHKSLLLHLAAIKAQGIKKILLLPETDPL 500 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 R + L++L + ++P+GG++ I V + + ++ +G Sbjct: 501 IDADPRLIQQALVHLIRNSVEAMPQGGELFIEVVLEEAQVKILIRDSGTGGTNL---RHA 557 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + V + ++ RL + V + LL + Sbjct: 558 TDPFYTTKLVGTGMGLTLVKRIVEDHGGRLTLDNRQQGGVRATVLLPR 605 >gi|298504481|gb|ADI83204.1| sensor histidine kinase, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 471 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 2 AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50 +N+ L + L V L S I H+I +P+ I +++ L + G + Sbjct: 235 RENLEKRLYEAEHLSKVGQLASGIAHEIRNPLNYISLAVDHLKGEFVAACPDKGERFVPL 294 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSW 104 + L + +G + + E V Sbjct: 295 AEKIKEEVRRANYLVVNFMNYGRPLKLRIGEVCYRELIDRALPLLRERLDEQRIAVATEI 354 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLAR 159 + + + + +F A ++P GG +T S + G Sbjct: 355 PPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFHLTFTDQGVGIP 414 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I S + + E+ +L E + +L Sbjct: 415 PEDLP-KIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTFTVIL 467 >gi|229029110|ref|ZP_04185208.1| hypothetical protein bcere0028_12120 [Bacillus cereus AH1271] gi|228732208|gb|EEL83092.1| hypothetical protein bcere0028_12120 [Bacillus cereus AH1271] Length = 402 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALALITPLANLANVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKRIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|225871872|ref|YP_002753326.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196] gi|225793438|gb|ACO33528.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196] Length = 899 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 23/226 (10%) Query: 10 SSMDLVA--LLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59 + L + LL + + H++ +P+ I + ++L + D++ Q +S Sbjct: 668 QAEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLSKQVRGDDRLSPLLDKITQQTFRASEI 727 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRER--- 115 L F R D + + + F + + + + + Sbjct: 728 VNGLLNFSRTGTSEFRETDVNTLIRETLTLVEHQFKTAQIELVMDLSADLPTIRGNAGKL 787 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ LNLF+ A ++ GG++ +S + ++ G+ PE +I D + Sbjct: 788 QQVFLNLFLNAKDAMHGGGQLRVSTLVNG-HVTIAITDTGSGI-SPENMQKIYDPFFTTK 845 Query: 176 I-------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ ++ E Sbjct: 846 SAPKEGQRRGTGLGLAVTYGIIQEHAGKIRVESEVGCGTTFYLEFP 891 >gi|196249913|ref|ZP_03148608.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196210427|gb|EDY05191.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 518 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ +I E L + + + +I S ++ + Sbjct: 297 FVANVSHELKTPVTSIKGFAETLLDGAMKDEEALEHFLTIILKESERLQTLVEELLDLSK 356 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLSRERAKILLN 121 G+ ++ + I + F + Q+ E +IL+N Sbjct: 357 IEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGLVIRGDRNRLKQILIN 416 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A A P G+V + ++ + E + +K G E +I + Sbjct: 417 LLANALAYTPEHGQVAVEAEEKEKEVLIHVKDTGIGIEEKEIP-RIFERFYRIDKARSRD 475 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + V + K Sbjct: 476 SGGTGLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFPK 515 >gi|39995481|ref|NP_951432.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982244|gb|AAR33705.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 500 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 2 AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50 +N+ L + L V L S I H+I +P+ I +++ L + G + Sbjct: 264 RENLEKRLYEAEHLSKVGQLASGIAHEIRNPLNYISLAVDHLKGEFVAACPDKGERFVPL 323 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSW 104 + L + +G + + E V Sbjct: 324 AEKIKEEVRRANYLVVNFMNYGRPLKLRIGEVCYRELIDRALPLLRERLDEQRIAVATEI 383 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLAR 159 + + + + +F A ++P GG +T S + G Sbjct: 384 PPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFHLTFTDQGVGIP 443 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I S + + E+ +L E + +L Sbjct: 444 PEDLP-KIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTFTVIL 496 >gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 972 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ S+ ++ + + H+I +P+ I L+LL DE + + + S Sbjct: 580 LRQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTTDPNDEQKEYLLGAIRST 639 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104 + + + + + + E I+ + R + Sbjct: 640 NRLTRLLSDILDVSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNL 699 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLAR 159 I +IL NL A +G + DS + ++ G Sbjct: 700 PLRLIGDEVRLRQILFNLVGNAIKFTEKGTIRIDACLLPRASDSSVRVLVTVGDTGIGIS 759 Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + V L + + L Sbjct: 760 EEHLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGSTFYLSLP 819 >gi|94272051|ref|ZP_01292060.1| PAS [delta proteobacterium MLMS-1] gi|93450253|gb|EAT01526.1| PAS [delta proteobacterium MLMS-1] Length = 568 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLI 53 MA+ + + L+ I HD + + I +LL D ++++ Sbjct: 183 MAEARELQADKLSSLGLMAGGIAHDFNNILTPITMHAQLLSRKLPADGSAAGLDQILKAA 242 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + +S L F R V + + + + ++ + + ++ E+ ++ Sbjct: 243 QRASALVRQILDFSRQGKHEPVQVQLGVIIKEAIKFLQAAVPANVTIRREIKSERDRVAA 302 Query: 114 ERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++L + ++ + + + NG+ Sbjct: 303 DPTQMLQVVMNLSLNAVQAIGDSEGVVTIELTEAEPPSGAEKSGVSHWLRLEVCDNGSGI 362 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE Q+ D + + + + + ++ + L Sbjct: 363 -DPEHLPQLFDPFFTTKEQGEGTGMGLPVAHGIVTRHGGQIEVQSDPGAGTCFEVYLP 419 >gi|163848714|ref|YP_001636758.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526657|ref|YP_002571128.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163670003|gb|ABY36369.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450536|gb|ACM54802.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 854 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGI--EDEVMQLIRLSSMS 59 +N + L + + + HD+ SP+ AI S+E LL+ E L+ + Sbjct: 603 ENEALR-QANHLKSTFLAGVSHDLRSPLTAIRASVEDLLERQHHVSPGEHRALLSNIARE 661 Query: 60 AIIRLKF------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108 +F + T +D + + Sbjct: 662 TARLSRFVDQLLDLSRIEAGTLPLDREWVEFNALVQDVVTSFHQQYPTCRVEVCVSPTLP 721 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L NL A P G +T+ + + + S+ G E+ Sbjct: 722 LLYIDPSLITQVLWNLLENAQKYGPSEGPITLEAFCTHTDLVLSVGDRGPGIPASERHRI 781 Query: 167 IVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + ++ + + V L Sbjct: 782 FDRFYRLERDRRSHRSGSGLGLAICHGIVTAHQGSIWVDERPGGGSVFRITLP 834 >gi|302388284|ref|YP_003824106.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] gi|302198912|gb|ADL06483.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] Length = 509 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 70/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++ + L S I HD+ +PI AI +E + + E + + + Sbjct: 264 LKESAEEKVEYDKENKELISNISHDLKTPITAIKGYVEGIMDGVASSPEKLDRYIRTIYN 323 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102 + + + +D+ ++ D V Sbjct: 324 KANDMDKLIDELTFYSKIDTNKIPYTFSKINVAGYFRDCVDEVGLEMEDRSIELGYFNYV 383 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + + +++ N+ + + + + I ++D + ++ NG Sbjct: 384 DEDVVVIADAEQLRRVINNIVSNSVKYMDKRNGIINIRIKDVGDFIQVEIEDNGKGIPAK 443 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ R+ + + +L K Sbjct: 444 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEIHFVLRK 502 >gi|295705395|ref|YP_003598470.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294803054|gb|ADF40120.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 378 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 74/223 (33%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61 + L + LV L + + H+I +P+ ++ ++ L +E + +++ Sbjct: 154 EEKILQLDKLALVGQLAAGLAHEIRNPMQSVRGFIQFLFNENEQAEPFQKIVLDELDRMN 213 Query: 62 IRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSR 113 + L T V+ + + V+ V++ Sbjct: 214 ELINNFLLVTQPTAPKKEIVSIVEVIHDTVAFLKSEAALYNVEMNVRIEGAIPLVSIDPA 273 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +NL A ++ + + ++ +++ ++ + ++ G+ Sbjct: 274 QMRQVFMNLLKNAIEAMEKKKRGEVNLIIKEWEDWALIDIQDTGSGIPLSIINKVGNPFF 333 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +E+ +L E ++ V++ L Sbjct: 334 STKDGTGMGLGLSICKTIINEHNGKLAIESDEN-GTVVTVKLP 375 >gi|289433267|ref|YP_003463140.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946987|gb|ADC74684.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 852 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 70/234 (29%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 +N + L A+ + + I H+I +P+ + ELL D +Q+I Sbjct: 472 ENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIGFSELLAAREDLPEDIMADLQVI 531 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWT 105 S + ++ + V + + + V + R Sbjct: 532 NHGSQRVVEIVRRLLTFARQNKPVKTRLNVHELIDNTLEFRSYVFKTANIEVIRKYDQNL 591 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + ++ LNL + A ++ + TI+ + + +G PE Sbjct: 592 PWITADPGQLQQVFLNLVINAEQAMRKAHDGGKLTITTTREDSFFSICIADDGPGM-TPE 650 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + D + + + ++ + E + + L Sbjct: 651 VKAKIFQPFFTTKGPKDGTGLGLSLAMAIILDHHGTIGVESEYGRDTAFTINLP 704 >gi|254513019|ref|ZP_05125085.1| histidine kinase [Rhodobacteraceae bacterium KLH11] gi|221533018|gb|EEE36013.1| histidine kinase [Rhodobacteraceae bacterium KLH11] Length = 747 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +AK + + AL L + + H++ +P+ + +L E ++ I S Sbjct: 367 LAKQRELLFQNEKMSALGELLAGVAHELNNPLSVVVGHSLMLKEEITNPDLTVRIEKISN 426 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 +A K ++ S I D+ VIE V S Sbjct: 427 AAERCAKIVKTFLAMARQQPSKIEQVDVASVIETAADVVGYGNTSGDVRVTQNIPAGLSP 486 Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPE 162 + ++++NL + A ++ G + Q ++K NG Sbjct: 487 IAADADQITQVIINLIINAEQAMTSSGCGNLIELSASAQPDTGMIEVTVKDNGPGI-PKA 545 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + I + + + ++ + + + L Sbjct: 546 IRARIFEPFFTTKEVGEGTGIGLAFCHRIILSHGGQIRLDQGGEGGTCIRITLP 599 >gi|222097101|ref|YP_002531158.1| sporulation kinase a [Bacillus cereus Q1] gi|221241159|gb|ACM13869.1| sporulation kinase A [Bacillus cereus Q1] Length = 510 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFIAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + V+ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500 >gi|220903470|ref|YP_002478782.1| sensor protein ZraS [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867769|gb|ACL48104.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 521 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 65/225 (28%), Gaps = 22/225 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59 L A+ L + + H+I +P+ +I E ++ + ++ + + Sbjct: 281 RKEKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGQRFPEGSEDRAAANVMVSEVDRLNRV 340 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115 + + R + + + ++I + + Sbjct: 341 IMDLIGLSRPSDVCPRPGRLADVVEHVMRLIRQDAEKRGVEVECRVAPGVPLAMVDPERM 400 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + LLNL + A ++P GG++T +V K ++ G + + D + Sbjct: 401 GQALLNLCLNALDAMPEGGRLTFAVTWHKKGVCLMVRDTGVGIVPRQLP-HVFDPYFTTK 459 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEII------DDHNVVLSALLE 214 + V + + + + L Sbjct: 460 GQGTGLGLAMVHKIVEAHNGEISVTSRQAQSGAAGE-TIFRIWLP 503 >gi|254423237|ref|ZP_05036955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196190726|gb|EDX85690.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 378 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 56/220 (25%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMR------- 68 L + H++ +P+ + LE L + E + + + ++ Sbjct: 154 LVGDLTHELRTPLTIVKGYLEGLADGAISPTPETYDRLANETERLRRLVNDLQELSKLES 213 Query: 69 -LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKILLNL 122 + +V+ + + + D + +++++ +IL+NL Sbjct: 214 GYLPIHPQAVNIVPLVTQVCDRFADQLINSDQLKLTTEFSPDLLPVWGDPARIEQILVNL 273 Query: 123 FMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST- 175 A +V + ++ G + + F + + Sbjct: 274 LSNALRHTKAGEVNVRVYTQATNDAKLVWIAVSDTGEGIKKTDIPRVFERFWRADRSRDR 333 Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L + + L Sbjct: 334 ISGGSGIGLAICRRLVELQGGTITATSEIGVGSTFTFSLP 373 >gi|330973714|gb|EGH73780.1| sensory box histidine kinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 982 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973 >gi|307822100|ref|ZP_07652332.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307736666|gb|EFO07511.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 507 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 65/223 (29%), Gaps = 23/223 (10%) Query: 14 LVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM--------QLIRLSSMSAI 61 L+ + S I H++ P+ AI + L++ + + + Sbjct: 284 LMGEMASGIAHELNQPLTAISTYTQTSINLINTDHPDPVKLLEILSKIHHQASRAGQIIQ 343 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +F++ + + D + + + + ++++ ++ ++ +I Sbjct: 344 RMREFIKSHAKHRSTADINSLIHECVDLCIVELNQNGVKLKLELENNLPSINVDQIQIEQ 403 Query: 121 NLFM---VAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLARFPEKFTQIVDGN 171 L + +L + + +K NG ++ +I Sbjct: 404 VLINLIRNSVDALKNLPEKRQRQITIHSRVTLNNSIQVRVKDNGPGIN-EDQQKKISTPF 462 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + L ++ L + D +L Sbjct: 463 YTTKADGMGMGISISRSLIEAHEGTLYFKSKPDKGTTFYFILP 505 >gi|301308442|ref|ZP_07214396.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300833912|gb|EFK64528.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 287 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 20/228 (8%), Positives = 66/228 (28%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + + + H+I +P+ AI ++L + + ++ + + Sbjct: 53 LERAKEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRLEFSNIIQSNN 112 Query: 61 IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--E 107 + + +D + + +I +I + ++++ Sbjct: 113 ELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRMPSGIELRLNDCEALV 172 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +IL NL + + G + + + F ++ +G + + Sbjct: 173 MEADKNRLTQILTNLLTNSIKHTEK-GFIRFGYKRTAASVEFFVEDSGEGIPRDKIDSIF 231 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +S + L + ++ + L Sbjct: 232 SRFVQLDSWSKGVGLGLAICRGLVEQMGGKIWVTSELGKGSIFYVTLP 279 >gi|297570096|ref|YP_003691440.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926011|gb|ADH86821.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 909 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 72/244 (29%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 K L + A+ L + I HD + + I + EL+ ++ Sbjct: 525 QKEFEAKLQQTKKMEAVGTLAAGIAHDFNNILTGILSYSELILRGNTSDPALRDDISRIL 584 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +L R + L F R + + ++ + + I D V + + + + Sbjct: 585 ELGRRGAGLTRQLLAFSREQEARMQPLKLNELVENLMKTLGRLIGEDIEVTFNLSPDLGN 644 Query: 111 LSRER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 ++ + +++LNL + A ++P + ++ Sbjct: 645 VNGDPGQLEQVILNLVVNARDAMPTGGTIVITTGNVELDAEQAARHPGMTPGPHVMLTVS 704 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ PE I + + + V + +++ + V Sbjct: 705 DTGSGM-DPETQEHIFEPFFTTKEVGAGTGLGLATVYGIIQQHQGSIWVYSEIGGGTVFK 763 Query: 211 ALLE 214 L Sbjct: 764 IFLP 767 >gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980] gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1464 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 66/250 (26%), Gaps = 37/250 (14%) Query: 1 MAKNICFNL--------SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 M + L + L + + + H+I +PI + ELL ++ +++E + Sbjct: 711 MQERENTRLLANEAAAKEASRLKSQFLANMSHEIRTPIAGVIGMAELLTDMNLDEEQQEC 770 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSV------------------DSLIGLGDIEQVIEDFI 94 SA L + ++ D LG + Sbjct: 771 AENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVVVRDVSKMLGFAAERKNLMF 830 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFS 150 D V V + +I+ NL + G +++ ++ E F Sbjct: 831 DSDITVGVDKDLIVMGDPGRVRQIITNLLTNSIKFTSEGRVKFSVIKEREDADTIEVKFV 890 Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ G E ++ + L R+ E Sbjct: 891 VEDTGIGI-EEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVDLMHGRITLESSLG 949 Query: 205 HNVVLSALLE 214 + + Sbjct: 950 QGTTATFWIP 959 >gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] Length = 550 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 58/224 (25%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ AI E L ++ + Q+I + ++ + Sbjct: 303 FVANVSHELRTPVAAIQGFAETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLA 362 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKIL 119 L + A R ++ ++ Sbjct: 363 RLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVWADRHRLDQVW 422 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF---PEKFTQIVD--G 170 NL A P GG VT++V+ + ++ G P F + Sbjct: 423 TNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPRIFERFYRVDP 482 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E V+ + Sbjct: 483 GRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIP 526 >gi|299136801|ref|ZP_07029984.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298601316|gb|EFI57471.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 1013 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 75/241 (31%), Gaps = 31/241 (12%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL------------DEVGIE 46 M K + S L + LL + + H++ +P+ I + ++L + Sbjct: 752 MEKQLT---QSEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLGKQLRGDEANHARLQPVL 808 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWT 105 +++ Q +S L F R+ VD + + + V++ Sbjct: 809 EKITQQTFRASEIVNGLLNFARMGTVDFARVDVNAMLRDTALLLEHQLRSGRVAVEMHLD 868 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARF 160 + +S ++ +N+ M A +L G ++ IS + + + +G Sbjct: 869 PQLPAISGNLGKLQQVAVNMMMNAKDALQDKGSGRIKISTSRTSDSVEILFEDDGPGM-P 927 Query: 161 PEKFTQIVDGNVESTID-------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I D + + + + E+ + L Sbjct: 928 PEVLRKIYDPFFTTKSNPKEGQRKGTGLGLAVTYGIVQEHGGTIEASSTVGEGTAFRLLF 987 Query: 214 E 214 Sbjct: 988 P 988 >gi|224370871|ref|YP_002605035.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223693588|gb|ACN16871.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 597 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 72/234 (30%), Gaps = 25/234 (10%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEVMQ 51 + + L ++ L + + H+I +P+ I +++ ++ + G + ++ Sbjct: 346 QTQLIHASKLASVGELATGVAHEINNPLAIITSTVGVVRDMLNPEFNLDSSPGAIVKELK 405 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I ++ A + + + + +I + + + + E Sbjct: 406 TIESAAFRASRITRQLLDFGRKNEPKKEMHNINNILETVRHGLTKHRFDLADIKIETNYA 465 Query: 112 SR---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ LNL A ++ G +TIS ++ G Sbjct: 466 QNLPDIKIDADQISQVFLNLLNNAEDAIKDKGTITISTDFDNEFVRVMIQDTGEGMPLER 525 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + K + + + + + L Sbjct: 526 IKE-IFNPFYTTKEAGKGTGLGLSISLGIINAMKGTIEVQSLPGKGSLFTISLP 578 >gi|297582942|ref|YP_003698722.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297141399|gb|ADH98156.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 807 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++I L L S + H++ +P+ +I E + ++ I S Sbjct: 573 RDITREAEVDRLKTELVSTVNHELRTPLSSIMGFTERMLNKDVSEERRRVYLETILSESE 632 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + D + + K + + Sbjct: 633 RLSQLVNNFLDLQKIESLPDEMDLEPVKISDSLRQAMSAFHPSEHHELKVIDSLTDTKVN 692 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQI 167 S ++ LNL A P GG +T+ + + + G + ++ Sbjct: 693 GHSASLHQVFLNLLSNAQKYSPEGGTITVETELDDAKKNVLIHISDEGIGIAKKD-HDRL 751 Query: 168 VDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + L + + ++ Sbjct: 752 FMKFSRIKDQHGGTIKGTGLGLALSKELMEAQGGDIRVRSEAGEGSTFTVVIP 804 >gi|157364230|ref|YP_001470997.1| histidine kinase [Thermotoga lettingae TMO] gi|157314834|gb|ABV33933.1| histidine kinase [Thermotoga lettingae TMO] Length = 488 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 59/238 (24%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 K + ++ L + + H++ +P+ AI E + + +Q++ Sbjct: 248 TKELEKLRAADRLKTDFIATVSHELRTPLTAIKAYTETILADPESMDKDTLTGFLQIVYK 307 Query: 56 SSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S+ L + + ++ + V + S Sbjct: 308 ESLHLESLLDELLDFAKLEQKAMVLEKSKFDLTELIMQVIQSMSEFARSKKVKLQCVKSK 367 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161 + + ++L+NL + ++ I S+ NG Sbjct: 368 PIYIVADQKRIRQVLINLISNGIKYSKEEASEKYVKLSAETHQDSVIISVADNGIGIEKQ 427 Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ E V + Sbjct: 428 HQNKIFEKFFRADSVFDYRTEGTGLGLAISKEIVELHGGQIWFESKPHEGTVFYVKIP 485 >gi|86138705|ref|ZP_01057278.1| sensory box histidine kinase/response regulator [Roseobacter sp. MED193] gi|85824765|gb|EAQ44967.1| sensory box histidine kinase/response regulator [Roseobacter sp. MED193] Length = 866 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ A L + + H++ +P+ I +++LL E E + + S+S Sbjct: 375 LRRARDDALAGERAKANLLTVMSHEMRTPLTGILGAIDLLQETDPNAEQSRYLDAMSVSG 434 Query: 61 IIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------S 103 + L + D + + + V Sbjct: 435 ELLLHHVNDVLQLSSLESGIASEAACPFDLREVMERLVGSQQAHARSHGNVLTLNYGLDE 494 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE 162 R + LLNL A G + + F + G + Sbjct: 495 AASMVAGQPRALQQALLNLIGNAIKFTRDGAVLVDVQLSATAGHIEFHVSDTGEGIAKKD 554 Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + + + S L Sbjct: 555 LK-RIFEDFITLDSSYRRGSEGTGLGLAITRRIVEAIGGTITCDSELGEGSLFSLTLP 611 >gi|75759340|ref|ZP_00739437.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896372|ref|YP_002444783.1| sporulation kinase B [Bacillus cereus G9842] gi|228900020|ref|ZP_04064256.1| hypothetical protein bthur0014_12290 [Bacillus thuringiensis IBL 4222] gi|74493172|gb|EAO56291.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542679|gb|ACK95073.1| sporulation kinase B [Bacillus cereus G9842] gi|228859634|gb|EEN04058.1| hypothetical protein bthur0014_12290 [Bacillus thuringiensis IBL 4222] Length = 402 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGIGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|228973644|ref|ZP_04134226.1| hypothetical protein bthur0003_34000 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980200|ref|ZP_04140514.1| hypothetical protein bthur0002_33710 [Bacillus thuringiensis Bt407] gi|228779558|gb|EEM27811.1| hypothetical protein bthur0002_33710 [Bacillus thuringiensis Bt407] gi|228786105|gb|EEM34102.1| hypothetical protein bthur0003_34000 [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 478 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 243 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 302 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 303 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 362 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 363 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIMDEGCGI-PEDRISRL 421 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ RL + ++ L Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 468 >gi|229134251|ref|ZP_04263066.1| hypothetical protein bcere0014_31630 [Bacillus cereus BDRD-ST196] gi|228649181|gb|EEL05201.1| hypothetical protein bcere0014_31630 [Bacillus cereus BDRD-ST196] Length = 429 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + + + + H++ SP+ +I +L + + + Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105 I + + L + V + + Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ N+ + G + +S++ + G + Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDD 366 Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + + L Sbjct: 367 QKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSEPGQGTTFIVTLP 423 >gi|226225795|ref|YP_002759901.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226088986|dbj|BAH37431.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 423 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 55/226 (24%), Gaps = 30/226 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA---IIRLKFMRLAFGYT 74 L + + H++ +P+ A+ ELL++ + + + + + Y Sbjct: 196 LLATLSHELRTPLTALEGYGELLEDEILGPLSHEQRDVITRLRTVGRHLGSLIEDILTYA 255 Query: 75 GSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKIL 119 + + + G + + +IL Sbjct: 256 SLEADRLTARPSAVRLDELLDSLHPFLEPLAREKGIDFVIDPEGGLPGMHTDEAKVRQIL 315 Query: 120 LNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171 LNL A + D F++K G + ++ Sbjct: 316 LNLCQNAIKFTESGSVTLRVSRGSPMPDGGVSLRFAVKDTGIGIATADL-QRLFRPFSQL 374 Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y LA R+ V + +L Sbjct: 375 EDVPTRRRGGTGLGLYIARRLATLLGGRIEVVSRPGEGSVFTLVLP 420 >gi|154244584|ref|YP_001415542.1| PAS/PAC sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] gi|154158669|gb|ABS65885.1| PAS/PAC sensor hybrid histidine kinase [Xanthobacter autotrophicus Py2] Length = 695 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------------G 44 + L AL L + + H++ +P+ + LL E Sbjct: 285 KRQRNALHQKEKLAALGSLLAGVAHELNNPLSVVTGQTMLLREQVLKEANVRSGGLPTLD 344 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKR 99 + I ++ ++ + L D+ + + + A + Sbjct: 345 KVIQRCDRIETATHRCARIVRSFLDMARQREAERRSTNLADVAREAVELLGYNMRASGVK 404 Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSL 151 V + L + ++LLNL + A +L V +N + + Sbjct: 405 VSLDIAPGLPRLMLDAGQIHQVLLNLLVNAQQALEEKAGERRVAVSVAVDADRNAVLIRV 464 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 NG ++I D + I L + L D + Sbjct: 465 ADNGPGIAEN-IRSRIFDPFFTTKPQGVGTGIGLAVSRGLIEAHGGTLELGTGPDGGALF 523 Query: 210 SALLE 214 + L Sbjct: 524 TIQLP 528 >gi|163941058|ref|YP_001645942.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163863255|gb|ABY44314.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 455 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + + + + H++ SP+ +I +L + + + Sbjct: 213 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 272 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105 I + + L + V + + Sbjct: 273 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 332 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ N+ + G + +S++ + G + Sbjct: 333 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDD 392 Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + + L Sbjct: 393 QKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSEPGQGTTFIVTLP 449 >gi|329765160|ref|ZP_08256742.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138363|gb|EGG42617.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 358 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 11/219 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 +L+ L SRI HDI +P+ I ++E L + + M I S Sbjct: 141 ETQVMRERFELIGELSSRIAHDIRNPLSVIRAAVENLKILYSIDDAKLKNMDKIDRSIDR 200 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 +++ + + L +I D I + +V+ I++ ++ +I Sbjct: 201 ITHQIEDVLDFVRSDTMMFEKYALSEILADALDSIHIPNKVRFELPKNDIEIMCDKKRIS 260 Query: 120 LNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 + + ++ G + I D+K I ++ +G+ +I + + Sbjct: 261 VVMVNIILNGIQAINENGNIKIRFNDAKKFAIIEIEDSGSGI-PNHIIDKIFEPMFTTKQ 319 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + ++ + V S + K Sbjct: 320 HGTGLGLSSVKTIINAHAGKISVKCNP---TVFSITIPK 355 >gi|295702530|ref|YP_003595605.1| sporulation kinase KinC [Bacillus megaterium DSM 319] gi|294800189|gb|ADF37255.1| sporulation kinase KinC [Bacillus megaterium DSM 319] Length = 435 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 69/225 (30%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 ++ ++S + + + + H+I +P+ ++ ++++ D + ++ Sbjct: 203 RQDEELMITSEKMSVIGQMAGAVAHEIRNPLTSLKGFVQVMQASKETNDTYLDIMMSEID 262 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKI 109 + M + L +I + + + + Sbjct: 263 RINLISSEMLILGKKQHVSFEKTNLCEILKQVVTLMEAQANLNNVSILLKETAKRPIYVS 322 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S + ++ +N+ ++ G +TI+V++ + + NG E+ Q+ Sbjct: 323 ADSNQLKQVFINVIKNGVEAIMEKGHITITVEEKDTRALIHFEDNGIGM-SQERIEQVGT 381 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + + + Sbjct: 382 PFYSTKEAGTGLGLAVCYKIMERHQGTMHFKSGKGKGTTVIIDMP 426 >gi|256839468|ref|ZP_05544977.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738398|gb|EEU51723.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 846 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 64/233 (27%), Gaps = 22/233 (9%) Query: 2 AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + L + L + + + H+I +P+ AI ++ E+ E E + + Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104 + + L+ + VD G+I + D + Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVVLIFDLGS 592 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + R +++ N A +G + + +K G E Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + ++ + + ++ + + L Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLP 703 >gi|322421777|ref|YP_004201000.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128164|gb|ADW15724.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1047 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEV--GIEDEVMQLIRLS 56 M + M+ V L + HD + + I E LL+E + + ++ I + Sbjct: 664 MVEQQFLQAQKMESVGQLAGGVAHDFNNMLSVILGHAEMGLLEEQVVESQRKHLEAILDA 723 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--QVIEDFIAVDKRVQVSWTGEK-----I 109 + + + + V +I L + + + + + + W + Sbjct: 724 ANRSASITRQLLTFARRQNVVPMVIDLNETVSGMLKMLARLIGEEINLVWAPGQEVARVN 783 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154 + +++ NL + A ++ G +TI + + + S+ Sbjct: 784 VDPSQIDQLMANLCVNARDAIGGVGSITIRTGNVRLAGELFDPASGVAPGSYVMLSVSDT 843 Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E I + + + V + +N+ + E Sbjct: 844 GQGM-TQEVMQHIFEPFYTTKDLGKGTGLGLATVFGIVKQNQGEIKVESEPGGGTTFRIY 902 Query: 213 LE 214 L Sbjct: 903 LP 904 >gi|237654056|ref|YP_002890370.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|237625303|gb|ACR01993.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 680 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 66/236 (27%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS----LELLDEVGI---------E 46 + S L+ + + S + H++ P+ AI + + L + Sbjct: 440 RQQEERLQQSSRLITMGEMASTLAHELNQPLAAIASYTTGCINRLQDEAPLDRSELLDVH 499 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWT 105 + + + + F+R + ++D + D +IE D R++ Sbjct: 500 QRIARQAQRAGEIIRRVHDFVRRSEPKREALDLAAVIRDAIGLIEADARKRGMRIRSELA 559 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLA 158 + + I + + ++ ++ G Sbjct: 560 DGLPQVPADAVMIEQIVVNLVRNAMDSMRDTPPAERVVAVHTAREGRFVTVTVADRGAGI 619 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + +A ++ RL E + + L Sbjct: 620 -PAETAARLFEPFFTTKQEGMGMGLNICRSIAELHRGRLAFESRPGGGTIFTLSLP 674 >gi|150008248|ref|YP_001302991.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|255015397|ref|ZP_05287523.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] gi|298375176|ref|ZP_06985133.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|149936672|gb|ABR43369.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] gi|298267676|gb|EFI09332.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 846 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 64/233 (27%), Gaps = 22/233 (9%) Query: 2 AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + L + L + + + H+I +P+ AI ++ E+ E E + + Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104 + + L+ + VD G+I + D + Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVVLIFDLGS 592 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + R +++ N A +G + + +K G E Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + ++ + + ++ + + L Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLP 703 >gi|83749310|ref|ZP_00946308.1| Sensor protein kdpD [Ralstonia solanacearum UW551] gi|83724041|gb|EAP71221.1| Sensor protein kdpD [Ralstonia solanacearum UW551] Length = 957 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55 A++ + S L L + + HD+ +P+ + E L +Q + Sbjct: 711 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLVGMAETLLRTPPPLSPLQAEAAEAIGEQ 770 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDL 111 + ++ + +A + + IE+++ + V V + Sbjct: 771 ARRMRVMVTNLLDMARLQNHDIKLRLEWQSIEELVGAALKGTPLPAHTVVVDDLADLPLQ 830 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPE- 162 + + L + + T +E ++ +G Sbjct: 831 RCDGPLMERVLSNLLENAGKFAPAGTEVRLSAGVVHDTVRGDEMHVRVRDHGPGVPAGAE 890 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ ES + + + R+ E D L Sbjct: 891 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPADGGACFVVALP 944 >gi|307308357|ref|ZP_07588062.1| histidine kinase [Sinorhizobium meliloti BL225C] gi|307321170|ref|ZP_07600573.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306893161|gb|EFN23944.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306901158|gb|EFN31765.1| histidine kinase [Sinorhizobium meliloti BL225C] Length = 639 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 62/222 (27%), Gaps = 23/222 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLE----LLDEV------------GIEDEVMQLIRLSSM 58 L + I H++ P+GAI ++ E +L I+D+ + + S Sbjct: 414 AGALSASIAHELNQPLGAIRSNAEAAAVILRSERPDLELIGQILVDIQDDDQRAHDVISR 473 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + K + + D I + E V Q S + Sbjct: 474 IRGLLKKRSEIDWQEFDLNDVTTSAIRILRGEAERRSVVVSSSQTSRELPVRADRVHVQQ 533 Query: 118 ILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++LNL A ++ ++++ S+ G E+ + + Sbjct: 534 VILNLATNAMDAMLEVITTEKRLLLETRLTAESKVELSISDTGRGI-PDERLASVFEPFY 592 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ V +L Sbjct: 593 TTKPTGTGLGLSIARAIVETYGGKISAANRPGGGAVFRVVLP 634 >gi|254826317|ref|ZP_05231318.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194] gi|293595558|gb|EFG03319.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194] Length = 459 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S + + H++ SP+ ++ LL + ++ Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + S+D L E V D W+ + +L+ Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL A P+GG + + + + ++ +G E + Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D S + + + + + + + L K Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458 >gi|187922203|ref|YP_001893845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187713397|gb|ACD14621.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 657 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 30/235 (12%) Query: 10 SSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 ++ L + S + H++ +P+ AI ++L+ + G+ + + I Sbjct: 262 QALKLAKAEAERACHAKSEFLSSMSHELRTPLNAILGFAQILEMDDGLSTDQLDSIAEIL 321 Query: 58 MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVS 103 + +VD + D Q+++ + +++ Sbjct: 322 KAGHHLLGLINEVLDLASIESGKTTLSLETVDVSTLIRDCAQLVQPLATSREIDLHLEIP 381 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ +I+LNL G+V + V+ + ++ G Sbjct: 382 ERAAACADNQRLKQIVLNLLSNGIKYNHPSGEVRVIVEPDGSRLRIAVADTGAGICAERL 441 Query: 164 FTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G ++++ I L R+ E L Sbjct: 442 GELFQPFSRLGADHASVEGTGIGLVITRKLTEAMGGRIGVESEPGKGSRFWVELP 496 >gi|118581023|ref|YP_902273.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503733|gb|ABL00216.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 1134 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 62/233 (26%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 ++ ++ + LL I HD + + I ++ L LD ++ +++ Sbjct: 756 QDERVRSQKLESLGLLAGGIAHDFNNILSGILGNISLVCSRLDPDDPLASRLKSCEKATI 815 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERA 116 A + + V +I + + F+ V+ + ++ + Sbjct: 816 RATGLTRQLLTFARGGEPVRKVIDPAPLIRESATFVLRGTNVKGDIRMTEGLSCINVDAG 875 Query: 117 KILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFP 161 +I L + + + + +++ G P Sbjct: 876 QISQVLNNLIINATHSMPGGGVIIISAMNEALHEGNAFNLAPGDYLRITVQDQGCGI-PP 934 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + + + + L Sbjct: 935 ENLPKIFDPYFTTKRRGSGLGLASAYAIIRRHGGAIEVSSRVGVGTTFTLRLP 987 >gi|331091984|ref|ZP_08340816.1| hypothetical protein HMPREF9477_01459 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402883|gb|EGG82450.1| hypothetical protein HMPREF9477_01459 [Lachnospiraceae bacterium 2_1_46FAA] Length = 497 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + N L L S I HD+ +P+ AI E + + ++ ++ I Sbjct: 251 LKTNAEEKLQYDKEGKELISNISHDLKTPVTAIKGYAEGIMDGVADTPEKMEKYIRTIYN 310 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQV 102 + + + + D A V Sbjct: 311 KANEMDRLINELTFYSKIDTNRIPYNFSTISVNDYFDDCAEDLSLELESKGIVFGYSNYV 370 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161 + I + + +++ N+ + + + ++D + L+ NG Sbjct: 371 EGEQKIIADAEQLKRVINNIVTNSIKYMDKEQGRINLRIKDVGDFIQVELEDNGKGISSK 430 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + E+ ++ + V+ ++ K Sbjct: 431 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSKEGTGTVMYFVIRK 489 >gi|297584325|ref|YP_003700105.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142782|gb|ADH99539.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 425 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 70/225 (31%), Gaps = 16/225 (7%) Query: 5 ICFNLSSM-DLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60 I N+ L A+ L + I H+I +P+ I ++LLD + ++ + + + Sbjct: 195 IEKNMQKHGKLEAVSHLSASISHEIRNPLQVIKGFIQLLDAKEYPREKQKEFYQHINDEI 254 Query: 61 IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 K + + + + I+ K + Sbjct: 255 ESAEKIINDYLMFAKPTFDYQVTISVEKEIKKAVSIIQPYAHFHSVTVKEPILVGDHIIR 314 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++++N+ ++ GG++ I V K+ +K NG E+ ++ + Sbjct: 315 CDEHRFKQVIINIARNCIEAMGPGGELVIDVFGGKDSVQIEIKDNGKGM-TTEQIARLGE 373 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + + Sbjct: 374 PYFSNKTSGTGLGMMVVYSILKNIGGAIDVQSVPGEGSIFTLSFP 418 >gi|229119504|ref|ZP_04248799.1| hypothetical protein bcere0017_57320 [Bacillus cereus Rock1-3] gi|228663970|gb|EEL19516.1| hypothetical protein bcere0017_57320 [Bacillus cereus Rock1-3] Length = 811 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 67/226 (29%), Gaps = 15/226 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58 K S L L + I H+I +P+ A+ ++LL + + ++ Sbjct: 583 KTEELLRKSEKLAVVGQLSTAIAHEIKNPLTAMKGFMQLLQSLGNKDTEHYIDIVLSEIE 642 Query: 59 SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKID 110 D + + + ++E ++ S T + Sbjct: 643 RIDSITSEFMTLAKPEALEIKTNDLNVLMKQVVMLLEPQATMNCIQIKTQFTSDTSFILC 702 Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ +N+ A + GG++ I +N+ G E+ + Sbjct: 703 ECNQLKQVFINILKNAIEATSMGGEILIQIEYAPDQNQVNIRFTDYGCGI-EQERIPYLG 761 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +++ ++ E ++ L Sbjct: 762 EPFYSLKENGIGLGLMICYKIIEKHQGKIFIESEVGKGTTVNIDLP 807 >gi|302344055|ref|YP_003808584.1| GAF sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640668|gb|ADK85990.1| GAF sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 778 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 +A L + L AL + + + H+I +P+ +I L + + ++ Sbjct: 538 LAHMRGRLLEADRLAALGEIAAGVAHEIRNPLVSIGGFARRVRNKLGDESPLSRYLDVVI 597 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 + L M + LG+I + D +V + + Sbjct: 598 EEATRLERTLNEMLDFSTDSRDHHDEYDLGEIMDRSVELLQRDLDEKRIKVVRDYAADLP 657 Query: 110 DLSRERAK---ILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + + + LNL++ A ++ R + ++++K + G + Sbjct: 658 RVYCDERQIKHVFLNLYLNAVQAMDRGGTITLRTFTVIREAKKFVAGEVSDTGGGIPM-D 716 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + V + + + + L Sbjct: 717 VIHNIFNPFFTTKDNGSGMGLSIVHKIVTRHLGGVEVHNREGEGASFLVTLP 768 >gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 672 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 16/240 (6%), Positives = 58/240 (24%), Gaps = 28/240 (11%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57 A+ ++ + A + + H++ +P+ A+ +L++ + E ++ + Sbjct: 287 AQRRRLQAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQLVERQPELSAETRAYVQRVT 346 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------- 102 + + ++ + + + + + Sbjct: 347 SAGKALRATINDILDFSKLEAGQVDIKPQPMSVAELTREAVDMFAAQAREKGVLLRLADL 406 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF 160 ++LLNL A G + + +F + G Sbjct: 407 SDLPLLIEADPDRLRQVLLNLIGNAVKFTEVGEIAVQARLDARADHIVFEVSDTGPGM-S 465 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ ++ + + L + + + Sbjct: 466 ADQSKRLFQRFSQVDAGAARKHGGTGLGLAICKGLVEAMGGSIGVDSRQGQGSRFWFTIP 525 >gi|228966539|ref|ZP_04127592.1| hypothetical protein bthur0004_33490 [Bacillus thuringiensis serovar sotto str. T04001] gi|228793261|gb|EEM40811.1| hypothetical protein bthur0004_33490 [Bacillus thuringiensis serovar sotto str. T04001] Length = 510 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 61/227 (26%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYKHDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIYIQTKPFEDTFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1120 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 63/243 (25%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K + +L A L + + H+I +P+ AI +++ + + + Sbjct: 520 RKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDVMLTTDLVAAQRKYV 579 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVD 97 + SA L + + L Q + + ++ Sbjct: 580 TTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVIDMVTSTLSIQTRKKRLDIE 639 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + ++L+N+ A +G + +FS++ G Sbjct: 640 LSLAPELAEYYYGAADRLRQVLMNIVGNAVKFTEKGQVHLSIKPTQDGKVLFSVQDTGIG 699 Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ I + + + L + + Sbjct: 700 I-ASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLMGGEIWASSELGKGSCFEF 758 Query: 212 LLE 214 +L Sbjct: 759 ILP 761 >gi|95931005|ref|ZP_01313733.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132901|gb|EAT14572.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 502 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 63/224 (28%), Gaps = 20/224 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAI- 61 + L ++ + + + H+I +P+ I ++ +L + V ++ + Sbjct: 263 QADRLASIGEMATGMAHEIKNPLAGISGAVTVLADDLAKDDPRRQVVQDILAQIARLNKT 322 Query: 62 --IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSRER 115 L F R VD + + Q++ ++ Sbjct: 323 ATDLLNFGRPGSPQCDFVDVNDVVKQTLFFVAQHPEAKNIHQITELTRDLPPVWADRKQI 382 Query: 116 AKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++LLN+ + A S+P D + + G+ E +I Sbjct: 383 QQVLLNIIINALQSMPNGGSLTVQTELTREHDERRYVRIQIVDTGSGIPV-ETLDKIFTP 441 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L +N + D + L Sbjct: 442 FYTTKNRGTGLGLAICKQLVKQNDGHISVLSSPDEGTSFAISLP 485 >gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 929 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 16/228 (7%), Positives = 46/228 (20%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI ++ + ++ ++ Sbjct: 515 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDDEERKNYYDIVEANNE 572 Query: 59 SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + + Sbjct: 573 RLLQLINEILDLSKIEAGMVEFTIAPMRLHLLCNEIYNALKFRCPMGVELVYEASDEDIV 632 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++ NL A G + +E F + G + Sbjct: 633 IEGDKNRIFQVVSNLIGNAFKFTTNGSVSYGYRRK-GSEIEFHVSDTGIGIEADKLSKVF 691 Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 692 ERFVKVNNFAQGTGLGLSICKTIIERLGGTISVSSEMGKGTTFLFTLP 739 >gi|320354600|ref|YP_004195939.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123102|gb|ADW18648.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 984 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 20/244 (8%), Positives = 52/244 (21%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54 + + ++ + + I HD + + I EL+ + + + Sbjct: 600 LLEQEVRQAQKLEAIGTMAGGIAHDFNNILAGIMGYAELILRDLEQQPQARHQQLLRNIL 659 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111 + A + + S I L D I ++ Sbjct: 660 SAGERARALIHKILTFSRQAESEPQPIRLQQTIDDAVDLIRASLPSTIAIEHRSDSRATV 719 Query: 112 ---SRERAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLK 152 + ++ +NL A ++ + Sbjct: 720 LADPIQIHQVFMNLCTNAGHAMKESGGTLTISLEDVTLDSQFTSDHPELRPGEYVRVEVS 779 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +G +I D + + + V + + + Sbjct: 780 DSGEGI-PEHLLGRIFDPFFTTKKKGEGTGLGLAMVHGIVSSMHGLIQVASQPGQGTRFT 838 Query: 211 ALLE 214 L Sbjct: 839 IHLP 842 >gi|269216257|ref|ZP_06160111.1| sensor histidine kinase [Slackia exigua ATCC 700122] gi|269130516|gb|EEZ61594.1| sensor histidine kinase [Slackia exigua ATCC 700122] Length = 341 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 19/214 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----SSMSAIIRLKFMRLAFGYTG 75 S + H++ +P+ AIH S E + + + E+ S + Sbjct: 125 SDVAHELRTPLTAIHGSAETMLDPDMPPEMRARFCQTIMSESERLTRLANDLLTLQHIED 184 Query: 76 SVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMV 125 DS + ++V + + +R +++ NL Sbjct: 185 GTDSATLERIDLHRVANEVADALEPLIDERGGTIEVIGEAPDVLGNPDRLYQVVYNLAAN 244 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVEST--IDSHD 180 A + + G V I ++ + +I S+ +G FT+ G+ Sbjct: 245 ACRFIGQEGHVVIRLEGFADRSIVSVVDDGPGFGDIDPKLLFTRFYRGDNSRARTTGGSG 304 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + S L Sbjct: 305 LGLAIAKSIVDAHDGTIEAYNVPRGGACFSVSLP 338 >gi|322418315|ref|YP_004197538.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124702|gb|ADW12262.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 484 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQL-I 53 + + + S + + L + + H+I +P+ AI + L+ + ++++ + Sbjct: 253 EEALACLIQSEKMASTGKLVAGVAHEINNPLAAISACMYRLEGKLGPDGDSCWDIIKAGM 312 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108 F R++ V S + E + + V+ Sbjct: 313 ARIENIVKQLSDFSRVSALELQHVPSDQFFQEAEAFGAMLLERGRTALVAVDHCNPPVLL 372 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++LLNL + A A+ G +V + + +++ +G E +I Sbjct: 373 HIDKAKMHQVLLNLLVNAAAASQPGAEVELRAAMDEAGYRLTVRDSGTGI-PEEDQEKIF 431 Query: 169 DGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + I + ++ R+ V S L+ Sbjct: 432 DIFFTTKPAGVGSGIGLAVCKSIVDLHRGRIEVSSRPGE-TVFSVLIP 478 >gi|326384015|ref|ZP_08205698.1| ATP-binding region ATPase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197175|gb|EGD54366.1| ATP-binding region ATPase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 474 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 74/233 (31%), Gaps = 19/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60 A++ S + + + H++ +P+ +I EL+ D+ ++ I + Sbjct: 226 ARSERQAWQSEEKMRRFVADASHELRTPLTSIKGFSELMAMGAVDSDDAVRRISSEADRM 285 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------VQVSWTGEKI 109 + ++ + + G ++ ++ED + + + Sbjct: 286 SLLVEDLLMLARLDAQRPLSRGEVEMVPLVEDAVEAARAGSPGADIAFDVPAQTGDPVIS 345 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 +++ NL A A + +SV+ + E ++ +G + F + Sbjct: 346 GDPSRLTQVVRNLVGNAVAHAGPDAHIQVSVESAPTEVRVTVADDGPGMTAEDAEHVFER 405 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 G+ D + + V L + R+ + +L + Sbjct: 406 FYRGDDSRHRDVPGAGNGLGLSIVAALVDAHGGRVGVDTAPGAGARFWFVLPR 458 >gi|323697590|ref|ZP_08109502.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323457522|gb|EGB13387.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 495 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 16/229 (6%) Query: 2 AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVM 50 + + L S L + + H+I P+ I EL + + ++ Sbjct: 257 KQELERQLRQSDRLAKIGQFSAGVAHEINEPLANILGFAELALQTPGLPEQVTTDLNNIV 316 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + F R +D + ++ E V + Sbjct: 317 DSSLHAREIIRKLMFFGRQLPPQPAFIDFNETVEQALRITESGARRGDIEIVRDFDRSLP 376 Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++NL + A ++ GG VTI + +N+ ++ G Sbjct: 377 KILADPQHMKQVVVNLVVNAIQAMTEGGTVTIRTINHENDAYLVVEDTGPGMTPDVLKMI 436 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D + + + + + E D + L Sbjct: 437 FTPFFTTKDVDQGSGLGLSVIHGIVKAHGGFIQVESSPDAGTRVEVALP 485 >gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 534 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGI-------EDEVMQL 52 MA+ I L L + H++ +P+ AI ELL + D + ++ Sbjct: 288 MAE-INLQLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNNMQRDYINEI 346 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------- 102 S + LA G + I + + + + Sbjct: 347 NESSQQLLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKVKKQQVIIDV 406 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLAR 159 + ++L+NL AH P G++ + + + + I S+ NG Sbjct: 407 EDNIPPVYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVSVSDNGVGIS 466 Query: 160 FP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V+ E + V + + ++ E I + Sbjct: 467 SENLELIFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQGSTFYFSIP 526 >gi|325674849|ref|ZP_08154536.1| phosphate regulon sensor histidine kinase protein PhoR [Rhodococcus equi ATCC 33707] gi|325554435|gb|EGD24110.1| phosphate regulon sensor histidine kinase protein PhoR [Rhodococcus equi ATCC 33707] Length = 464 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 56/216 (25%), Gaps = 18/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + H++ +P+ I EL + D M + R+ + + L L Sbjct: 248 FVADASHELRTPLATIRGFAELYRQGAAPDPEMVMSRIEDQAQRMGLLVEDLLLLARMDA 307 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------------DLSRERAKILLNLFM 124 ++ + AV S + +++ NL Sbjct: 308 QRPFERHPVDLLAVAADAVHDARARSPQRRIMLEVLPGSAPAEVLGDDARLRQVVGNLVG 367 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179 A P VT+ V + + + G + F + + T Sbjct: 368 NALDHTPAEADVTVRVGTDGADAVVEVADTGPGLAEGDAARVFERFYRADASRTRTSGGS 427 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + + L + Sbjct: 428 GLGLSIVAAIVAAHGGTVDVDSAPGNGATFRVRLPR 463 >gi|228940724|ref|ZP_04103287.1| hypothetical protein bthur0008_33670 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228818968|gb|EEM65030.1| hypothetical protein bthur0008_33670 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941356|gb|AEA17252.1| sensor protein atoS [Bacillus thuringiensis serovar chinensis CT-43] Length = 510 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIMDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ RL + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 500 >gi|229177846|ref|ZP_04305219.1| hypothetical protein bcere0005_12100 [Bacillus cereus 172560W] gi|228605637|gb|EEK63085.1| hypothetical protein bcere0005_12100 [Bacillus cereus 172560W] Length = 402 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 67/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSGTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIVG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|229917891|ref|YP_002886537.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469320|gb|ACQ71092.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 432 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 69/232 (29%), Gaps = 21/232 (9%) Query: 1 MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 M + + N + +L +++ H+ +P+ +I LL G ++ ++ Sbjct: 202 MTETLETNETKNEELASVM----AHEFKTPVASILGYATLLKRGGTSEKQIEYADKIERE 257 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKI 109 + + +++GL E + D KR+++ T +++ Sbjct: 258 GKRLSRLSQDVLRLAKLDHTIVGLHATELSLSEQIRETILSLDSEMTRKRMKLDLTMDEV 317 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 + + ++ NL A + + V++ ++ G + Sbjct: 318 VMKGDASLLQQVWTNLLQNAVEYAYEESTLHLLVKEDATHITCEIRDEGEGMTPEQVDRA 377 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + + + + + K Sbjct: 378 FERFYQADTSRHRNGSGLGLAIARQIVQLHGGEITLSSEKQIGTTAKVVFPK 429 >gi|138896292|ref|YP_001126745.1| sensory box histidine kinase PhoR [Geobacillus thermodenitrificans NG80-2] gi|134267805|gb|ABO68000.1| Sensory box histidine kinase PhoR [Geobacillus thermodenitrificans NG80-2] Length = 583 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ +I E L + + + +I S ++ + Sbjct: 362 FVANVSHELKTPVTSIKGFAETLLDGAMKDEEALEHFLTIILKESERLQTLVEELLDLSK 421 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLSRERAKILLN 121 G+ ++ + I + F + Q+ E +IL+N Sbjct: 422 IEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGLVIRGDRNRLKQILIN 481 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A A P G+V + ++ + E + +K G E +I + Sbjct: 482 LLANALAYTPEHGQVAVEAEEKEKEVLIHVKDTGIGIEEKEIP-RIFERFYRIDKARSRD 540 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + V + K Sbjct: 541 SGGTGLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFPK 580 >gi|325262999|ref|ZP_08129735.1| sensor histidine kinase KdpD [Clostridium sp. D5] gi|324032093|gb|EGB93372.1| sensor histidine kinase KdpD [Clostridium sp. D5] Length = 892 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + I L L A L I HD+ +P+ +I + E L ++ + + Sbjct: 654 QQEIDMKLQKEQLRANLLRSISHDLRTPLTSISGNAETLLINEGKVEKEQRKKIYKDIYD 713 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTG 106 S + + + G+++ + + V V+ Sbjct: 714 DSMWLINLVENLLSVTRIENGTMELNLQGEIVEDVIEEALHHVNRRGKEQKIHVECDELL 773 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L+NL A P G + I + + + S+ NG E+ ++ Sbjct: 774 MAKMDVKLMLQVLINLTDNAVKYTPAGSDIRIKAEKQGDRAVISVTDNGLGI-PAEQKSR 832 Query: 167 IVDGNVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L V LE Sbjct: 833 LFQMFYTAGHAVSDGRRGMGLGLTLCKSIVNAHGSELKVYDNVPKGTVFRFELE 886 >gi|300117558|ref|ZP_07055345.1| sensor histidine kinase [Bacillus cereus SJ1] gi|298725093|gb|EFI65748.1| sensor histidine kinase [Bacillus cereus SJ1] Length = 357 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 72/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLMKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ +G + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352 >gi|229084116|ref|ZP_04216405.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44] gi|228699152|gb|EEL51848.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44] Length = 453 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + +S + S + H+ SP+ +I + L + S Sbjct: 213 MAKKLR---NSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNNLTKSEQTHYLEIIESE 269 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 R+ + S+D D + W K +L+ E Sbjct: 270 SRRMSSLCKQLLLLASLDKEDLTLRKRSFDLGKQIKDIIFMLEWEWRKKELAVEMDVPNI 329 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++ +NLF + GG + ++ + E S+ G E Sbjct: 330 QIYGDENLLYQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 389 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + ++ + V + + + + S L+K Sbjct: 390 FDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTTFSIYLQK 443 >gi|66044087|ref|YP_233928.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63254794|gb|AAY35890.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 984 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975 >gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 915 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 419 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 478 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 479 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 538 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 539 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 597 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 598 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 656 >gi|302185889|ref|ZP_07262562.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642] Length = 984 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975 >gi|299147467|ref|ZP_07040532.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298514745|gb|EFI38629.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1341 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R ++ + A GG +++ + D +E +FS+ NG + Sbjct: 925 CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|298482475|ref|ZP_07000661.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298271454|gb|EFI13029.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1341 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R ++ + A GG +++ + D +E +FS+ NG + Sbjct: 925 CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|295088146|emb|CBK69669.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1341 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R ++ + A GG +++ + D +E +FS+ NG + Sbjct: 925 CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|293371658|ref|ZP_06618069.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f] gi|292633355|gb|EFF51925.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f] Length = 1341 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R ++ + A GG +++ + D +E +FS+ NG + Sbjct: 925 CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 879 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 383 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 442 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + ++ + Sbjct: 443 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFI 502 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G V +DS ++ G Sbjct: 503 EPDVPVAMNGDPMRLQQVISNLLSNAIKFTDIGCIVLHVQRDSD-YLSIRVRDTGVGIPA 561 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 562 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 620 >gi|258513455|ref|YP_003189677.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] gi|257777160|gb|ACV61054.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] Length = 686 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 81/223 (36%), Gaps = 11/223 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQ 51 M + + S ++LVA L + I H+I +P+ + L++L + E + Sbjct: 464 MEREMD-RFSRLNLVAELAAGIGHEIRNPLTTVRGFLQMLRSKKNAQYMEYYDLMIEELD 522 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + L +I + + Q + ++++ E + Sbjct: 523 RANSIISEFLSLARNKPLDLHKQNLKQIIINISPLIQAEAIISDKNIKLELEDIPELLLD 582 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +E +++LNL + A ++ GG +TI + ++ + ++K G + +I Sbjct: 583 KKEIHQLILNLVLNAIEAMFPGGTITIKTYTANDKVVLAIKDEGQGIKPN-ILEKIGTPF 641 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A + + E + VL + Sbjct: 642 FTTKENGTGLGLSMCHSIAGRHNATIKYESGINGTTVLVEFIP 684 >gi|269792981|ref|YP_003317885.1| PAS/PAC sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100616|gb|ACZ19603.1| PAS/PAC sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 1362 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 59/221 (26%), Gaps = 26/221 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H+I +P+ AI ++L+ + + + + L + +++ Sbjct: 903 ANMSHEIRTPMNAILGYTQILERDPSLGPKQREKVQAIIRSGNHLLELLNDLLDLSKIEA 962 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSW-----------------TGEKIDLSRERAKILLNL 122 + E + D V R+ ++L+NL Sbjct: 963 GVLEIRQEVFPLRKMLQDVEVMFRGGAEAKGLHLLLEGLDQAPHWVSGDQRKLRQVLVNL 1022 Query: 123 FMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 A G ++ + + + F ++ G E F G+V Sbjct: 1023 LGNAIKFTSEGMVVLRAQEIHRDQEGGRTQLRFQVEDTGPGIPEEELEVIFDPFGQGSVG 1082 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + H V + + Sbjct: 1083 LKAGGTGLGLAISKRIVEAMGGDIRVSSQVGHGTVFTVTVP 1123 >gi|237715249|ref|ZP_04545730.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405093|ref|ZP_06081643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646474|ref|ZP_06724113.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a] gi|294808662|ref|ZP_06767396.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b] gi|229444558|gb|EEO50349.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262355968|gb|EEZ05058.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638187|gb|EFF56566.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a] gi|294444101|gb|EFG12834.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b] Length = 1341 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R ++ + A GG +++ + D +E +FS+ NG + Sbjct: 925 CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|160885605|ref|ZP_02066608.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483] gi|156109227|gb|EDO10972.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483] Length = 1341 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R ++ + A GG +++ + D +E +FS+ NG + Sbjct: 925 CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|94968686|ref|YP_590734.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94550736|gb|ABF40660.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 384 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 19/222 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAII 62 ++ L S I HD + + AI + +L + MQ ++ + Sbjct: 136 RLEAAGKLASGIAHDFNNMLTAILSYADLQLQHVESGSAMQRYVLGIQAAAERAAQTTHQ 195 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKIL 119 L F R + ++I I D + ++ + ++ Sbjct: 196 LLAFCRRQKMQFAETQVNDVIQQSSELIGRLIGEDIELAFDLDRGIPEVWADAGQLNQVF 255 Query: 120 LNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 +NL + A ++PR ++ + G + I + + Sbjct: 256 VNLAVNARDAMPRGGRLLFATSKRGTEEKDKRVSIFVHDTGMGI-GADVLPHIFEPFFTT 314 Query: 175 TIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + K +L L Sbjct: 315 KEQGKGTGLGLATVYGIVKQMKGEILVSSEPGRGTTFEIALP 356 >gi|308271787|emb|CBX28395.1| hypothetical protein N47_G37190 [uncultured Desulfobacterium sp.] Length = 318 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGA----IHNSLELLDE----VGIEDEVMQ 51 K+ + S L A+ L + I H++ +P+ + I + +EL++E I+ E++ Sbjct: 73 EKSQQQLIQSESLAAIGQLVAGIAHELNNPLSSTASLIQSDIELINEIKDKRDIDHEILA 132 Query: 52 LIRLSSMSAIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS 103 +R S R Y +V+ L D + + + + + + Sbjct: 133 DLRFSLREMNRAETIVKSVLGLSRQTQTYAENVNINKILDDALRVLHNQYSSSNIEIVKD 192 Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNL 157 + +++ A ++ +N+ A +LP N + G Sbjct: 193 FDENLPEINGNFANLGQVFINVIKNALQALPDDKGFIYLKTRYNKETNCIEIECRDTGEG 252 Query: 158 ARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y + ++ + L Sbjct: 253 IPNEIIKDIFKPFFTTKDVGKGSGLGLYISHEIIKKHGGLISVSSNKGKGSTFVIALP 310 >gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 667 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 294 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E V + Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 354 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ + ++ + S+ +G+ Sbjct: 355 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 414 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473 >gi|297568908|ref|YP_003690252.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924823|gb|ADH85633.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 639 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 68/230 (29%), Gaps = 19/230 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSM 58 + M+ + ++ I HD + + AIH ++ L + +Q ++ M Sbjct: 269 EEEAIRAQKMESLGVMAGGIAHDFNNALTAIHGNVSLARLQLPANGETAGLLQSAEVAIM 328 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113 A + + + ++ + + + + I V+ + + Sbjct: 329 QASGLARQLLTFAKGGKPIRKVVPMATLIRDSVEMILRGSAVRAEFELATDLRPAEVDAG 388 Query: 114 ERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++L NL + A ++P + + + G PE Sbjct: 389 QITQVLQNLAVNARQAMPEGGVLQVKADNHQGPPPDPAIPHWLCLIISDQGPGI-PPELQ 447 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + + ++ + + LL Sbjct: 448 ERVFDPYFTTKEGGNGLGLAICQAIVSKHNGTIKATASAGGGTEFTILLP 497 >gi|222151384|ref|YP_002560540.1| hypothetical protein MCCL_1137 [Macrococcus caseolyticus JCSC5402] gi|222120509|dbj|BAH17844.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 585 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 58/233 (24%), Gaps = 23/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSM 58 + M + + + H++ +PI + E + + DE + +I S Sbjct: 347 TEEKKIDQMKQ--MFIANVSHELRTPIQMLQGYTEAILDGIVSEKSDVDEFLNIILDESK 404 Query: 59 SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGE 107 + + + D + + + + S + Sbjct: 405 RLNRLVNELLNVARIDAGEQVLNLEATDIEELIERTIMNFKHVAEKHETELQTHYSHHSK 464 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + +++ N+ A G ++I + I + G F Sbjct: 465 AWLDYDKMIQVITNIIDNALRYTVAGDVISIHTDEDDENLIIRISDTGVGIAPEHIDNIF 524 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + + + + + K Sbjct: 525 ERFYKVDQARTRGKHGTGLGLFIVKSIVEGHHGSINVDSTVGKGTTFVISIPK 577 >gi|171780276|ref|ZP_02921180.1| hypothetical protein STRINF_02064 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281624|gb|EDT47059.1| hypothetical protein STRINF_02064 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 489 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 56/221 (25%), Gaps = 23/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S + H++ +PI I L LL D+ E + + I + M Sbjct: 265 FVSDVSHELRTPIAVIKGHLGLLQRWGKDDPETLCESLDAAYHEADRMSILVNDMLDMVR 324 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAKILLN 121 GS D G + D + + R+ + + +L Sbjct: 325 VQGSFDLHKGEITDLKQSIDLVLGNFRILYPDFRFSLTSTIDDCIYAEIYKHHFEQAILI 384 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----- 176 L + +++ I ++ G + Sbjct: 385 LIDNGVKYSSGSRNIHVTLDVLGENAIVKVRDEGEGISQDDLNHIFERFYRTDKSRNRVS 444 Query: 177 --DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + +++ + D + ++ + Sbjct: 445 TQGGLGIGLAILKQIVDAYNLKVSVSSVVDEGTEFTLVIPR 485 >gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492] gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492] gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 497 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 59/233 (25%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--SM 58 + + + S +L ++ + + H+I +P+ AI LL + +++ + Sbjct: 261 LNEALQKAQRSDELKSVFLANMSHEIRTPLNAIVGFSTLLACGDADLSRQEIMEFTSLIE 320 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + + V L I + + + + Sbjct: 321 KNSQLLMVLISDILDLSKIESNTMEFHFEKVSLNGILESIYSAQKMNLRKGVELLLDLPD 380 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A G ++ G E Sbjct: 381 RAAVIYTDPTRLGQVVNNLINNAVKFTAEGRITIGYRLKDFATLEVFVEDTGTGM-SEEV 439 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ + +L Sbjct: 440 LAHIFERFYKGDAFVQGTGLGLAICRTIVERFHGKIEVASTLGKGSRFAIVLP 492 >gi|39995948|ref|NP_951899.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982712|gb|AAR34172.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 787 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 31/245 (12%) Query: 1 MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 M M+ V L I HD + +GAI S EL E E+++++ Sbjct: 399 MQLESQLRHAQKMEAVGTLAGGIAHDFNNILGAIIISTELALDDAKEGASNPELLEIVLN 458 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEK 108 ++ + + + + I + + + Sbjct: 459 AAERGRNLVTQILAFSRQGEQKRQTVRIAPIVKECLKLLRASLPTTIDIRPTISCEDAMA 518 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLK 152 + ++++NL A ++ + T + S+K Sbjct: 519 SIDPTQIHQVIVNLCTNAAHAMHGKVGMLEVTLTAVTLHDDITGTHPDLHAGPYVELSVK 578 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ E +I D + + V + ++ ++ E + Sbjct: 579 DTGHGM-GSEVLERIFDPFFTTKEQGRGTGLGLPVVYGIVKDHGGGIVVESEPGSGTTVR 637 Query: 211 ALLEK 215 L+ + Sbjct: 638 VLIPR 642 >gi|320160584|ref|YP_004173808.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994437|dbj|BAJ63208.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 534 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 72/230 (31%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-- 57 ++ + + + A+ L + + H+I +P+ ++ N L L ++ E + Sbjct: 300 EESQQALVQAEKMAAVGRLVASLAHEINNPLQSLQNCLHLALRADLDPEQRSHYLNMTET 359 Query: 58 ---------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + ++ + D+ + V+ V + E Sbjct: 360 ELNRLIQTVRRMLEFYRPSSRERTPIRLAKAVQHVLDLMRSEVHSRGVEVAVHIPEEIEI 419 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQ 166 L + ++ NL + A ++ I ++ + + + +++ +G P+ + Sbjct: 420 TGLEDQIQQVFFNLVLNAMDAVEECETKRIWIECVSDEKDWVITVEDSGRGV-PPDIRDR 478 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215 I + + + + + + + L K Sbjct: 479 IFEPFISTKKNGTGLGLAVSYGIIEAHGGTLALIPGKYGQGACFEIRFPK 528 >gi|228986732|ref|ZP_04146862.1| hypothetical protein bthur0001_34090 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773063|gb|EEM21499.1| hypothetical protein bthur0001_34090 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 510 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIHTCNMQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|218441012|ref|YP_002379341.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218173740|gb|ACK72473.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 477 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 64/236 (27%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ L+ + L S + H++ +P+ + L+ L + E ++ Sbjct: 238 LARTFEQMLTRLSDAWEHQRQLVSDVSHELRTPLTIVSGYLQSTLRRGSNLTPTQREALE 297 Query: 52 LIRLSSMSAIIRLKFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + I L+ + + + + + D+++ Sbjct: 298 IAGMEADRTIKLLQDLLNLARVDSGQMHFKLESINLNDWLTQVKSKTEKYSDRQINWEIP 357 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE- 162 I + + ++L L+ + ++ T + I + G + Sbjct: 358 PNLIIIKADPDRLLQVLYNLIDNAIKYSDPQTPITVKLDRQQQAIIQVCDRGVGIPLQDQ 417 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V + V S Sbjct: 418 ARIFERFYRVDETRSRSTGGTGLGLSIVKTFVEGMGGNISVSSQPGKGSVFSLTFP 473 >gi|169335527|ref|ZP_02862720.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM 17244] gi|169258265|gb|EDS72231.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM 17244] Length = 896 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSS--MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56 KN L + L A L I HD+ +P+ +I + +L + ++ +L Sbjct: 654 EKNEKALLEAKQEKLRANLLRSISHDLRTPLTSISGNASVLLKDFDSLDNNKKHELYEDM 713 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTG 106 ++ + + T D + L ++ + +V+ ++V Sbjct: 714 YDDSMWLINLVENLLSVTRIEDGSMNLNIEPELLSEVIGEALKHINRKSVEHNIKVENND 773 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E I + ++++N+ A P G +TI V S+ NG E Sbjct: 774 ELIMAKMDSRLIMQVIINIVDNAIKYTPEGSDITIKVNKKNGYVYTSIIDNGKGI-SDEG 832 Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y + + + L+ + + + L+ Sbjct: 833 KKNLFKMFYTGGNIADSRRGLGLGLYLCKTIVNAHGGELMVKDNTPKGTIFTFSLK 888 >gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 713 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +++ S + ++ + + H+ +P+ I +L+ + + E IR Sbjct: 187 RSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLDTPLSPEQETYIRAVKT 246 Query: 59 SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQV 102 S + + G +D D ++E + + + Sbjct: 247 SGEALLSLIDGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAPRAQDKGLEIAADLAE 306 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + S +ILLNL A GG + + E +++ G Sbjct: 307 DLPLQVVGDSDRVRQILLNLAGNAVKFTESGGVGVTAERA-GAEIALTVRDTGPGIPEER 365 Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DG+ + + L R+ D +L Sbjct: 366 LPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTSRPDEGSCFRVVLP 422 >gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] Length = 623 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA 70 S + H++ +P+ ++ + E L + I+D + + R + + + L+ Sbjct: 388 QFVSNVSHELRTPLTSVRSYSEALADGAIKDSELAVEFLGVIQRETDRMIRMISDLLNLS 447 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------------- 115 + + + L D + ++ + + S + +R Sbjct: 448 RMDSNRQEMNLELIDFQGLVNHILDRFDMMIQSEDYVNEEYHIQRELTKSPIWVEADQDR 507 Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171 +++ N+ A P GG +T+ + + NE I S++ G F + + Sbjct: 508 LTQVIDNILNNAIKYSPDGGTITVRLMTTHNEAILSVQDQGLGIPQKALGHVFDRFYRVD 567 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ I++ L Sbjct: 568 KARSRQQGGSGLGLAIAKEVVELHHGKIWANSIENKGSTFFISLP 612 >gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253] Length = 949 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 21/240 (8%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + + + ++ G Sbjct: 572 EPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLARDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIP 689 >gi|325262522|ref|ZP_08129259.1| sensor protein KdpD [Clostridium sp. D5] gi|324032354|gb|EGB93632.1| sensor protein KdpD [Clostridium sp. D5] Length = 478 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 75/234 (32%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMS 59 + + + + + I HD +P+ I L+ E + L+ + Sbjct: 241 QEQTKLEVQREHMKSSMLRSISHDFRTPLTGIMGDCSLMIENHSMDKHTRDDLLHDITEQ 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---------- 109 ++ +K M T + +V++D + ++ + + Sbjct: 301 SMWLMKMMENVLSMTKIESGQQFIEKHPEVVDDIVYEVQKHVIGLKNRRDFRVSLPDQVV 360 Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L+NL A GG ++++V +N F +K +G+ + + Sbjct: 361 VAEMDGKMIMQVLVNLLDNAVKHTQDGGSISLNVSYRENRVYFVVKDDGDGI-EEDMKEK 419 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + + + ++ E + + LE Sbjct: 420 IFNEFVSLSDKSTDSKRGIGLGLAICKEVVEAHGGKIWAENRREGGARFTFWLE 473 >gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 655 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56 K+I + + S + H++ +P+ +I SL LL + ++ + + Sbjct: 420 KDITERQAMEKMKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPQKSERMLDIAMFN 479 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTG 106 + + L ++G + ++ ++ V Sbjct: 480 CDRLMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGVDLCVVPLEF 539 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++L NL + ++ + + +N + S++ G + T Sbjct: 540 KVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENHVLISVRDRGRGIPPDKIETI 599 Query: 167 IVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E I L Sbjct: 600 FGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGDGSTFFVSLP 652 >gi|293400683|ref|ZP_06644828.1| sensory box histidine kinase PhoR [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305709|gb|EFE46953.1| sensory box histidine kinase PhoR [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 404 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 67/236 (28%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + ++I L + + H++ +PI + +E+L D+ E E + + Sbjct: 170 LFQDISKTLEGEKMQKRFIADASHELKTPISVLKGMVEILNRDDFDDPITEKEFLSQMAK 229 Query: 56 SSMSAIIR----LKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTG 106 + L+ RL+ + + + ++ +Q + Sbjct: 230 EVQRLDVLVKDLLQLSRLSLSNVILEREKCDVCALFDKACDSLWKNAQQKQLNIQKDYQT 289 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +++LNL A G + ++ ++ G + + Sbjct: 290 LEYAFCDPKRMLQVILNLLSNAIKYSDSGTITLRTRMETTYYI-LEVEDEGCGIQKKD-M 347 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + V + + + E + L+ Sbjct: 348 EKIFDRFYRVDDARSRQSGGSGLGLPIVRSIIEAHGGNIEVESTYGKGTLFRIKLK 403 >gi|228991502|ref|ZP_04151450.1| hypothetical protein bpmyx0001_22540 [Bacillus pseudomycoides DSM 12442] gi|228768226|gb|EEM16841.1| hypothetical protein bpmyx0001_22540 [Bacillus pseudomycoides DSM 12442] Length = 368 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 83/222 (37%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E + + Sbjct: 139 RSKLVKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPDLPQESREQYIEHILGELN 198 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLS 112 + +I ++ A + VD+++ +++++I + + ++ + + Sbjct: 199 RAQVIIDDYLTFAKPASQKVDNIVIDQELKRIISMMMPLCNMNSINVSENLVTGSITGNT 258 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++ GGK++I +N+ +K +G E+ + + Sbjct: 259 QHFQQCFLNLIKNSIEAMLNGGKLSIKSSACENKITIVIKDSGIGM-TQEQINRFGEPYF 317 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L I + L+ Sbjct: 318 STKTRGTGLGTMVAVKIIETMNGTLDINSIVNKGTTLTITFP 359 >gi|148658559|ref|YP_001278764.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148570669|gb|ABQ92814.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 718 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLI------RLSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++ ++L L E +Q + + + Sbjct: 496 SMVSHELRNPLHTLNGFVKLVLQERAGPLTSLQQDFLKMADEQIEQLSSRVAELLEYNRF 555 Query: 73 YTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 G + + + ++ + + V+ + ++L NL Sbjct: 556 KAGRLALQPDVGDLALLIAGTVNRLKLQAEQQQLALVSHVTHLPLCRFDGQRIGQVLTNL 615 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS- 178 A + P GG +++S E + G E F + Sbjct: 616 IENAIKATPAGGTISVSADVHDQEVRVRVSDTGVGIPASELGKIFQRFYQVAKHRRTHGN 675 Query: 179 -HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + + L Sbjct: 676 NLGLGLAICQQIVEGHGGRIWVESEEGVGTTFTFTLP 712 >gi|254773641|ref|ZP_05215157.1| PhoR [Mycobacterium avium subsp. avium ATCC 25291] Length = 465 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +P+ I EL + D M L R+ S ++ + L L V + Sbjct: 245 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 304 Query: 83 LGDIEQVIEDFIAVDKRVQVS-------------WTGEKIDLSRERAKILLNLFMVAHAS 129 ++ + AV + T E ++L NL A Sbjct: 305 HHRVDLLALASDAVHDAQAMDPKRTITLEVLDGPGTPEVFGDEPRIRQVLGNLIANALQH 364 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V ++ + + G + F + + + Sbjct: 365 TPESADVTVRVGTDGDDAVLEVADRGPGMNEQDASRVFERFYRTDSSRARASGGTGLGLS 424 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 425 IVESLVRAHGGTVGVTTAPGQGCCFRVTLPR 455 >gi|224026600|ref|ZP_03644966.1| hypothetical protein BACCOPRO_03357 [Bacteroides coprophilus DSM 18228] gi|224019836|gb|EEF77834.1| hypothetical protein BACCOPRO_03357 [Bacteroides coprophilus DSM 18228] Length = 1342 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV---MQLIRLSS 57 K ++ L + + + H+ +P+ I + L+ LL E +++ + + Sbjct: 794 EKQHIEEVNRAKL--VFFTNVSHEFRTPLTLIISHLDALLQEQLPVQLYNKLLKIKQNTQ 851 Query: 58 MSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGE---- 107 + + + V + + + A +++ ++ E Sbjct: 852 YMTNLITELLDFRKFTQNHVILHLASQDICLMLEEIYLTFTDYAQQRKIDYTFESEPKNI 911 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + K+ NL A P GG + + N+ I +G EK Sbjct: 912 LCWIDRTQMEKVFFNLLSNAFKYTPDGGSIRLKACIQANQLIIQTTDSGTGIPENEKQRI 971 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + I + L Sbjct: 972 FERFFQGEDQKGQEKYPGTGIGLALTKNIVEAHHGTITVSSILHQGSTFTVTLP 1025 >gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 915 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 419 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 478 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 479 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 538 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 539 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 597 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 598 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 656 >gi|167630635|ref|YP_001681134.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167593375|gb|ABZ85123.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 490 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 71/222 (31%), Gaps = 12/222 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSSMS 59 + ++ ++++A + + + H+I +P+ + L++ +DE +L+ Sbjct: 261 EQELLSIDRLNIIARMAAGLGHEIRNPMTTVRGFLQIMSKMDENEERRRYFELMISELDR 320 Query: 60 AIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 A + + + + Q +++++ + I Sbjct: 321 ANAIITEFLSFTRRKSKDPQPSNLKRLVEDFFPLLQADALREDKWIQLELADVPDLILDE 380 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +E ++L NL ++ G VTI + + ++ G+ + + Sbjct: 381 KEIRQLLFNLVRNGLEAMAPGKCVTIRTAVDDDVVVLQIEDQGSGISDKD-MKNLGVPFF 439 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A +K ++ E S Sbjct: 440 TTKDKGTGLGLPIAYNIASRHKAKITVESSS-KGSCFSVHFP 480 >gi|118464141|ref|YP_879978.1| sensor histidine kinase [Mycobacterium avium 104] gi|118165428|gb|ABK66325.1| sensor histidine kinase PhoR [Mycobacterium avium 104] Length = 478 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +P+ I EL + D M L R+ S ++ + L L V + Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 317 Query: 83 LGDIEQVIEDFIAVDKRVQVS-------------WTGEKIDLSRERAKILLNLFMVAHAS 129 ++ + AV + T E ++L NL A Sbjct: 318 HHRVDLLALASDAVHDAQAMDPKRTITLEVLDGPGTPEVFGDEPRIRQVLGNLIANALQH 377 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V ++ + + G + F + + + Sbjct: 378 TPESADVTVRVGTDGDDAVLEVADRGPGMNEQDASRVFERFYRTDSSRARASGGTGLGLS 437 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 438 IVESLVRAHGGTVGVTTAPGQGCCFRVTLPR 468 >gi|115379567|ref|ZP_01466656.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1] gi|115363425|gb|EAU62571.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1] Length = 766 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV-------MQLIR 54 L + L +L + I H+I +P+G + E +L ++G + I Sbjct: 514 ETQLLRAEKLATVGVLAAGIAHEIGTPLGVVRGRAEYVLGKLGPAHPQAAGVGVIIDQID 573 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 S + L F RL V L D E + + +++ L+ Sbjct: 574 QVSRTIRQLLDFSRLQPAVARPVALSTLLRDVYELLHLEAERQQVVLELDLPEGLPLLAA 633 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISV----------QDSKNENIFSLKINGNLARFPEK 163 + ++ L + + + S++ +G + Sbjct: 634 DPDQLQQVLVNLVLNACDACSAGGKVHLAAAAPDGSSMGAWGFVTLSVRDDGCGIPVESR 693 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E H + L Sbjct: 694 NQVFDPFFTTKKRGQGTGLGLAIVAQIVRNHGGRVELESEPGHGTCFTLLWP 745 >gi|114797394|ref|YP_759952.1| sensory box sensor histidine kinase FixL [Hyphomonas neptunium ATCC 15444] gi|114737568|gb|ABI75693.1| sensory box sensor histidine kinase FixL [Hyphomonas neptunium ATCC 15444] Length = 388 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 60/245 (24%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIED 47 + + M L A+ + S + H++ P+ A+ N LE LLD E Sbjct: 138 QQRSELRMQEMQSELVHFSRLSAVGTMASALAHELNQPLTAVANYLEASRDLLDSPDPEM 197 Query: 48 EVM---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VD 97 + + + + ++ + L D + + D Sbjct: 198 KDVLREALTEAARQAVRAGEIVRKLRSYVSRGEVDARPLGLGPLLADAIALSKLSRDLAD 257 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFS 150 +++ + + +I + + ++ + Sbjct: 258 IPIKLDQEEATDHVMGDPIQIQQVVINLIRNAMDALPNTQDARIMVRVYSAEEPGFVAIE 317 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + NG + I + + + + + + Sbjct: 318 VCDNGPGL-TDDLRENIFKPFATTKSQGMGLGLSICQTIVEAHGGVIRAITPPEGGTCFR 376 Query: 211 ALLEK 215 L K Sbjct: 377 FTLRK 381 >gi|41406690|ref|NP_959526.1| PhoR [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395040|gb|AAS02909.1| PhoR [Mycobacterium avium subsp. paratuberculosis K-10] Length = 478 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +P+ I EL + D M L R+ S ++ + L L V + Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 317 Query: 83 LGDIEQVIEDFIAVDKRVQVS-------------WTGEKIDLSRERAKILLNLFMVAHAS 129 ++ + AV + T E ++L NL A Sbjct: 318 HHRVDLLALASDAVHDAQAMDPKRTITLEVLDGPGTPEVFGDEPRIRQVLGNLIANALQH 377 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V ++ + + G + F + + + Sbjct: 378 TPESADVTVRVGTDGDDAVLEVADRGPGMNEQDASRVFERFYRTDSSRARASGGTGLGLS 437 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 438 IVESLVRAHGGTVGVTTAPGQGCCFRVTLPR 468 >gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ECD227] Length = 949 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 21/240 (8%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + + + ++ G Sbjct: 572 EPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLARDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIP 689 >gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 623 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 26/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIR-----------L 64 + + H++ +P+ AI E+L + + + S S Sbjct: 364 ANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVNTILDMSK 423 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILL 120 + + +++ + ID R +ILL Sbjct: 424 IESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKRACKQILL 483 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174 NL A P GKV I + N S+ +G + ++ D + Sbjct: 484 NLLSNAVKFTPANGKVKIRLAPEGNHLGISVIDSGIGIAPADL-ARLGDPFFQASASHDR 542 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + V L + + E ++ L Sbjct: 543 THEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLP 582 >gi|319781532|ref|YP_004141008.1| osmosensitive K channel His kinase sensor [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167420|gb|ADV10958.1| Osmosensitive K channel His kinase sensor [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 909 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 58/233 (24%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 + L + L + I HD+ +P+ AI + L + E++ + S Sbjct: 658 RAKLAAEADRLRSALLTSISHDLKTPLAAIMGAAGTLRDFSAALPEPDRAELLSTVLDES 717 Query: 58 MSAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + +G+++ + ++ + +++ E Sbjct: 718 ERLNRFIANLLDMTKIESGAMEPNYAFHYVGDIVGSALQRARKIIGEHKIETDIPRDLPM 777 Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + L NL A P G + + + + G + Sbjct: 778 LKVDPVLFEQALFNLLDNAAKYAPAGSTIRVQGWTDNGSVLLQIMDEGPGIPPGDLERIF 837 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215 D + + D V + + K Sbjct: 838 DTFYRVRKRDQIRAGTGLGLSICRGFIEAMGGTITAANRTDGSGAVFTIKMPK 890 >gi|301056179|ref|YP_003794390.1| sensor histidine kinase [Bacillus anthracis CI] gi|300378348|gb|ADK07252.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 484 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI +I +E + + E M + + Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106 + + +D E V + + ++ Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160 + +++ NL + + + K S N I + NG+ Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + E+ + E + LEK Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHDGNIWAESELGKGTSIFFSLEK 478 >gi|316931900|ref|YP_004106882.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599614|gb|ADU42149.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 449 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 25/259 (9%), Positives = 68/259 (26%), Gaps = 46/259 (17%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------- 48 + + + + +L L + + H++ +PI I+ ++ +LD Sbjct: 190 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFIYGNIHMLDRYRERMAAYLAAIHGGA 249 Query: 49 ---------------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 ++ S + G T +D Sbjct: 250 DPAEIDALRRRLKIDALLADYASLIEGTLEGAMRVSDVVKNLRRLSFPRTGETQPIDVDR 309 Query: 82 GLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139 + + + + + +I++NL A ++ + I Sbjct: 310 IVRTAARWAVRAKPGHVDLAFDIVPDLTVVGNEGQFHQIMVNLVDNAIDAVRGRPEPRIE 369 Query: 140 V--QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195 + + E ++ NG +I + + + + + + E+ Sbjct: 370 ISARRQDGEVTITVADNGPGLPDGMI-DKIFEPFFTTKPVGEGTGLGLWISYGIVREHGG 428 Query: 196 RLLPEIIDDHNVVLSALLE 214 L D+ + L Sbjct: 429 TLAAANRDEGGAAFTVTLP 447 >gi|268609738|ref|ZP_06143465.1| hypothetical protein RflaF_09602 [Ruminococcus flavefaciens FD-1] Length = 358 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 60/218 (27%), Gaps = 18/218 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIR--------- 63 L S + H++ +P+ I N + LL G+ E++ M+ + Sbjct: 129 LRTDFVSNVSHEMKTPLAVIQNYVALLRSPGLSENDRMEYALAIDDATKRLAALVTNILK 188 Query: 64 -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + + + ++ + + + Sbjct: 189 LNKLENQQIFPENKVIVLSELVCECMLELENEWEKKNIEIETDIDDDIMINADPELLSIV 248 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST 175 NLF A GG V+++V+ S+ G F + G+ Sbjct: 249 WNNLFSNAIKFTDEGGTVSVAVKRMNGGAAVSISDTGCGIDSETGRHIFDKFYQGDTSHA 308 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + V + + + +L Sbjct: 309 SKGNGLGLALVKRIIDIIGGEITVSSELGKGSTFTVIL 346 >gi|269794985|ref|YP_003314440.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269097170|gb|ACZ21606.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 554 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 68/216 (31%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLEL-LDEVGIED--EVMQLIRLSSMSAIIR--------LKF 66 L + + H++ +P+ +I LEL LD+ + ++++ +S + + Sbjct: 334 LIASVSHELRTPLTSILGYLELVLDDELPDHARPSLEIVERNSNRLLDLVTEILSASRQA 393 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRERAKILLNLF 123 + VD + + + V + + +++ N+ Sbjct: 394 SKPLEITPVPVDLGATVLQSAESLLPRARERDVVVDTSGVHNVLTVADPFRMRQVVDNVL 453 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDS 178 A G+V ++++ + ++ + +++ G E S + Sbjct: 454 SNAIKYNVDHGRVDLALEQAGDQLVLTVRDTGIGISGEELPQLFEHFFRSAAVRNSAVHG 513 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ L + ++ + Sbjct: 514 SGLGMGIAREIVRKHGGDLTVDSALGQGTTVTITVP 549 >gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1] gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 535 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ + + + + + H+I +P+ AI ++LL+E ++ ++ +++ S+ Sbjct: 152 LARSKKLAEEATEQKSRFLANMSHEIRTPLNAITGFIKLLEENEKDETKLKYLKIVENSS 211 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLS 112 L+ + + + + + E F + + + Sbjct: 212 ESLLQIINDILDISKIESGNLMIEPYNFNPYEDLIMIAELFQTRAAEKNIIFQIRYNNNM 271 Query: 113 R--------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +I NL A P G V + + +K G ++ Sbjct: 272 PKILFGDALRIKQIFTNLLSNAIKFTPEGSVVKCIIWYKNGQLNIRVKDYGIGISEKKQK 331 Query: 165 TQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + ++ + + L L + + + + + Sbjct: 332 A-IFEPFMQADSSTVRNYGGTGLGLSISLELTRMLGGTLTLKSEKEKGSIFTLSIP 386 >gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] Length = 732 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 23/221 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR------- 68 A L + H+I +P+ + ELL+E + +E + S+ L + Sbjct: 193 AFLA-NMSHEIRTPMNGVIGMAELLEETDLNEEQRMCTKTVVESSNALLSLVNDVLDFSK 251 Query: 69 -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RERAKIL 119 + + + + + ++ ++L Sbjct: 252 ADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGRLRQVL 311 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFTQIVDGNV-----E 173 +NL A G + +++++ + ++ G + T Sbjct: 312 INLVGNAIKFTETGFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQVNSETT 371 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + L L + L Sbjct: 372 RRYDGAGLGLAISKKLIELMGGTLGVTSKLGEGSEFTFALP 412 >gi|156740993|ref|YP_001431122.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232321|gb|ABU57104.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 396 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 54/236 (22%), Gaps = 40/236 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L + + H++ +P+ +I +E L +++ + + + + Sbjct: 160 LVANVSHELRTPLASIKLLVETLQSDPPAPVAQRMLSQIAQEVDAITQLVEELHELSQIE 219 Query: 78 D---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + I +E + ++LLNL Sbjct: 220 SGRVALQLVPTPLAPLVAHTIERIRPQMERKSIRVIACLPDDLPPALIDGNRVGQVLLNL 279 Query: 123 FMVAHASLPRG------------------GKVTISVQDSKNENIFSLKINGNLARFPEKF 164 A P G S + S+ NG + Sbjct: 280 LHNASKFTPDGGQVAIEASVIMVGDGSPLPPGIPSSHLPGQWLLVSIADNGIGIPARDL- 338 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + L + R+ ++ + L Sbjct: 339 ARIFERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSVEGEGSIFYLTLP 394 >gi|92114524|ref|YP_574452.1| periplasmic sensor signal transduction histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91797614|gb|ABE59753.1| periplasmic sensor signal transduction histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 652 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 + + + L L L + I H++ P+ AI E Sbjct: 403 LRATRDELVQAAKLAVLGQLAAGINHELNQPLAAIRAYTENARAFIARQRHEAADANLAQ 462 Query: 50 -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104 ++L + + +F R + +V ++ + I ++ Sbjct: 463 VLELTERMAEISAQLRQFSRKSGDNLTAVSVASCFAYALRLFQSRIHESGVRVEQHWPEQ 522 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE 162 ++L+NL A ++ ++ + + NG Sbjct: 523 AVWVRADPVRLEQVLVNLIGNALQAMNDTAAPCLTLAIVAESTTVYLDVADNGPGIDEAR 582 Query: 163 KFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 QI + + + + + +L + L + Sbjct: 583 L-AQIFEPFYTTKSMGSGLGLGLSISRRIVEDLDGQLDACNLPGGGARFRVRLPR 636 >gi|313905694|ref|ZP_07839055.1| histidine kinase [Eubacterium cellulosolvens 6] gi|313469518|gb|EFR64859.1| histidine kinase [Eubacterium cellulosolvens 6] Length = 278 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 17/222 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLS 56 L L+ S I H +P+ I +LL+E +++E + + S Sbjct: 58 EKEKLAELI-SDISHQTKTPLANILLYTQLLEEKNLDEECCTLVEEISCQSKKLDFLVQS 116 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + G++D++I + + + + + + S+ Sbjct: 117 LVKTSRLETGTFQMTALPGNLDTMIAAAIEQILPYAESKGIRVIYEPASQNAVFDSKWTQ 176 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 + L N+ A P +VT+ V+ + + + NG E F + G Sbjct: 177 EALFNILDNAVKYSPENSEVTVKVEPYEMFSCILVSDNGIGIADDEKTAVFGRFYRGRNV 236 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I Y + E + E +V L + Sbjct: 237 KDRKGVGIGLYLARQIIEEQGGYITVESAIPKGLVFRIYLPR 278 >gi|266619522|ref|ZP_06112457.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479] gi|288868933|gb|EFD01232.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479] Length = 468 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M+ + + + HD SP+ +I LE + + + ++ + + Sbjct: 233 MSDELNKMEEYQK---TFIANVSHDFRSPLTSIKGYLEAILDGTIPPEMYEKYLTRVITE 289 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKID 110 + + M DI +VI+D +K + T Sbjct: 290 TERLNKLTQGMLTLNTLDSKGYLNRTNFDINRVIKDTAASFEGTCEEKNINFDLTFSNNI 349 Query: 111 LSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162 + +++ NL A + I + S+K G + Sbjct: 350 QMVYADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGKYEKIFISVKDTGIGIPKDSIKK 409 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ D + V + + + + L K Sbjct: 410 IWERFYKSDLSRGKDKKGTGLGLAIVKEIIQSHGENIDVVSTEGVGTEFIFSLPK 464 >gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1271 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 57/240 (23%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + I H+I +P+ A+ ELL + + I S Sbjct: 790 LKDQKDKAEQAGRAKSEFMANISHEIRTPLNAVIGFSELLSARAQDSKAASYINSIKTSG 849 Query: 61 IIRLKFMRLAFGYTGSV----------------DSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + + + + I + + Sbjct: 850 KALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKLGYFIAADT 909 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 + ++LLNL A R +V D + + S+K G Sbjct: 910 PKTMMLDISRLRQVLLNLIGNAVKFTERGEVSISVRCEAVNDERVDLYISVKDTGIGI-P 968 Query: 161 PEKFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ I + + L + E + +L Sbjct: 969 KEEMEDIFQAFRQRAGHNINKYGGTGLGLSISSKLVDMMGGEIRVESKVGIGSTFTVILP 1028 >gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] Length = 949 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 21/240 (8%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + + + ++ G Sbjct: 572 EPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLARDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + + Sbjct: 631 KEVV-RLFDPFFLVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIP 689 >gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 528 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 A+ + + L + + H++ +P+ AI +++L E + Sbjct: 136 ARRLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEEAT-PADLAQGLEVI 194 Query: 58 MSAIIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKRVQ 101 + + ++ + + + + Sbjct: 195 ERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPTADAKDIRLTSLL 254 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 G + +I+ NL A P G++ +++ +K+ + NG Sbjct: 255 ADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQVTMHRAKSNVEVIVSDNGQGIAPE 314 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 I LA + L + L Sbjct: 315 FLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSSLGLGKGASFTLSLP 373 >gi|254410903|ref|ZP_05024681.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182258|gb|EDX77244.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 493 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 26/228 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRL 64 + + H++ SP+ AI S+E++ + I ++ + Sbjct: 266 QQLK---QFTADASHELRSPLTAIKASVEVMQTHPERIHPADVEKLDAIASATSQMSRLV 322 Query: 65 KFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + + L + + + + + ++ + Sbjct: 323 EDLLLLARTDATTPAPTREWAVIPLDELLEDVEERLEPNAEAQDMTLKLLLQPDVFVNGN 382 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168 + + ++ NL A GG VT+S+ + + S++ G P F ++ Sbjct: 383 ASQLFRVFCNLLENALQYTSSGGTVTLSMSTDETWVVVSIEDTGIGIAPEHLPFIFDRLW 442 Query: 169 DGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A + + L Sbjct: 443 RADRARTQRQEGSGLGLAIAKAIAQRHGGDITVRSKLGVGSCFQVYLP 490 >gi|220923418|ref|YP_002498720.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219948025|gb|ACL58417.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 662 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL 52 + K + + AL L + I HD + + + +L+LL E MQ Sbjct: 266 LEKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRARLIDNAMQA 325 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R VD + ++ +++ + D + + + + Sbjct: 326 VEQGRKLTQQLLAFGRSQTLRPEVVDVTRLILGMDDMLKQSLRGDIGIVLDLAEDLWPIE 385 Query: 113 RERAKILLNLFM----------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + A++ + L + VT + S+ G+ P+ Sbjct: 386 ADPAQLQIALINLAVNARDAMPNGGQFRIKTENVTTHDGEVAQSVAISVSDTGHGM-PPD 444 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V A ++ + + L + Sbjct: 445 VLARAFEPFFSTKEVGKGTGLGLPQVYGFAQQSNGSVRVTSEVGRGTTFTISLPR 499 >gi|218779891|ref|YP_002431209.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761275|gb|ACL03741.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 865 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 63/245 (25%), Gaps = 33/245 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 + S + A+ L I HD + + I E+L + EV+ Sbjct: 482 LRLERQLR-QSHKMEAIGTLAGGIAHDFNNILSPIIGYTEMLRDTLKGDKAAVRDLSEVL 540 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + R + L F R + V + D+ +I + ++ Sbjct: 541 KAARRAKELVSQILTFSRKSEEKPQLVALAPIVSDVLNLIRATLPATIQIHKDIDLSCGS 600 Query: 111 LSRERAKILLNLFMVAHASLPRGGKV-------------------TISVQDSKNENIFSL 151 + + ++ + + + + S S+ Sbjct: 601 VMADSTQMHQVVMNLCTNAYQVMRQTGGVLEVTLKETQLKEKDLSPASSIQPGRYAWLSV 660 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE +I + + + + + +++ + + V Sbjct: 661 SDTGEGM-PPEIQERIFEPYFTTKPIGEGTGMGLAVAHAIVTKHRGEIRVQSSPGRGTVF 719 Query: 210 SALLE 214 + Sbjct: 720 DVFIP 724 >gi|78357413|ref|YP_388862.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219818|gb|ABB39167.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 795 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 K + L + + A+ L I HD + +G + E+ + E MQ Sbjct: 412 RKQLEAQLRQAQKMEAIGTLAGGIAHDFNNILGVMMGYTEMSMDETTEGSAMQRRLDAVL 471 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 R + L F R ++ + + + +++ + + + + Sbjct: 472 SAGRRARDLIHQILTFSRHEEPSRHPLNLVSPVKETVKLLRASLPANIAIDLRTDTVPPV 531 Query: 111 LSR--ERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKI 153 + + ++++NL A ++ + + + Sbjct: 532 NANLSQIQQVVMNLCANAAHAMRGPGGNLLLALDSTLLTAEEARPLSVPAGTYVRLRVSD 591 Query: 154 NGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ + + + V + + + + + L Sbjct: 592 TGHGIDPQILHSIFDPFFTTKKPDEGTGMGLALVHGIITAHGGTVSVSSVPGQGTDFTIL 651 Query: 213 LE 214 L Sbjct: 652 LP 653 >gi|116750937|ref|YP_847624.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116700001|gb|ABK19189.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] Length = 757 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 73/233 (31%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSA 60 + + ++ + +L I HD + + AI ++ L + ++ +S A Sbjct: 371 EEEHLKIEKLESLGILAGGIAHDFNNILTAILGNISLAKIYARDKVRKRLEEAERASAKA 430 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---- 116 + + V + L ++ + F V+ ++ + Sbjct: 431 RDLTQQLLSFAKAGAPVKRTLSLAELIRESASFGLSGSNVRCEFSIPDGLWLVDVDEGQI 490 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNLARFP 161 +++ NL + A ++P GG + +S ++ S++ +G+ Sbjct: 491 SRVITNLVINADQAMPEGGTIEVSAENAAFRTAENARLPLRPGKYVKISVRDHGDGI-PG 549 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + V + ++ + E L Sbjct: 550 EHLAKIFDPYFSTKEKGTGLGLATVYSIVSKHGGCVDVESRPGIGSTFHFYLP 602 >gi|330685290|gb|EGG96951.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU121] Length = 608 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ ++++ +E L+E + + + + R + I + + Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDDNLAPQFLSVTREETERMIRLVNDLLQLSK 438 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122 D + + + I + T ++ ++ ++ N+ Sbjct: 439 MDNESDQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 498 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175 A +V V+ + N +++ NG + F + + Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ ++ + L Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVESQGTSIFITLP 597 >gi|299534473|ref|ZP_07047806.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1] gi|298730101|gb|EFI70643.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1] Length = 438 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 53/215 (24%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRL------ 69 S I H++ +P+ I ++L + + + +I + +K + Sbjct: 213 SSIAHELRTPLTFIKGYTDILAKRDLTEQDRQKYLAIIIEETNRLSRLIKDLFDLAKMDE 272 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 Y + + + V+ +IL+NL Sbjct: 273 NSFVIEKHYLHLEPFFTSIEEKLSPAFQDKGIYLVVRCDSGLTLYADEARLEQILINLLN 332 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179 A G T++V+ +++ G + + Sbjct: 333 NALIYCAPGDMTTVTVKKDSGTLSITVEDTGKGIPKKDLPYIFDRFYRVEKSRSRALGGS 392 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + + + Sbjct: 393 GLGLAIVKELVQAHGGEIKVRSEINKGTTFELSFK 427 >gi|229068990|ref|ZP_04202283.1| hypothetical protein bcere0025_11980 [Bacillus cereus F65185] gi|228714102|gb|EEL65984.1| hypothetical protein bcere0025_11980 [Bacillus cereus F65185] Length = 402 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 67/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIVG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|154483202|ref|ZP_02025650.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC 27560] gi|149736010|gb|EDM51896.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC 27560] Length = 899 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + L + D QL Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDSFDNDTKKQLYMYIYD 717 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + + D + + + + + + V E Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRITEDLMDDVITEALHHINRKSEEHHISVESKEEF 777 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++N+ A P+ + I + + I S+ +GN E Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKQGKQAIVSISDDGNGI-ADEIKP 836 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + S + + + + L H V + L Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891 >gi|158521661|ref|YP_001529531.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510487|gb|ABW67454.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 612 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57 +A+ S A+ + + + H+I +P+ ++ LE + + + E + R++ Sbjct: 370 LAETRLIAERSEKFAAMGRMGAAVAHEIRTPLTSLKLFLESVQDLARLSAEDQEDFRIAM 429 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKI 109 + + + + D+ + + + V Sbjct: 430 EQIQRMEGTINRFLDFARPREPVFSEIDMADLVASVVMMIRPLANRQECALHVHTEENLP 489 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLA 158 ++ +R + L A + P G VT+S +K G+ Sbjct: 490 PVTGDRPLLSETLINLIVNALEATPDHGTVTVSATTDHFEKEGVRTPCVRIDVKDTGHGI 549 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + + + V+ + L S L Sbjct: 550 AEDRVNT-IFEPFFTTKASGTGLGLPLVLHTVESHGGSLRITSKLKEGTTFSVFLP 604 >gi|116326605|ref|YP_796526.1| Signal transduction histidine kinase [Lactococcus lactis subsp. cremoris SK11] gi|3687664|gb|AAC62214.1| LcoS [Lactococcus lactis] gi|76574959|gb|ABA47428.1| histidine kinase sensor protein [Lactococcus lactis] gi|116108973|gb|ABJ74095.1| Signal transduction histidine kinase [Lactococcus lactis subsp. cremoris SK11] Length = 464 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 69/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +AK+I +D S + H++ +P+ I ++ + + + +++ Sbjct: 225 LAKSIEDLAEKLDFMKRERNEFLSSVAHELRTPLTFIKGYADIANRSTTSLEDKTQYLRI 284 Query: 53 IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 IR S ++ + + + + + ++ + Sbjct: 285 IREESRHLTQLMEDLMNLAQLEENGFKVEKHQVLIQELINEVVSKVSGVFSEKRINFLIS 344 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++L+NL M A+ + ++ K + G Sbjct: 345 GEGNFYANIDFMRIEQVLVNLLMNAYKYSADESDIKLAFIPEKENFKIVISDKGEGIPEQ 404 Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + T + V + ++ +++ E I + L Sbjct: 405 DLPYIFERFYRVDKSRTRTTGGVGLGLAIVQDIVKKHNGKIIVESIQNQGTTFIIELP 462 >gi|325289763|ref|YP_004265944.1| integral membrane sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324965164|gb|ADY55943.1| integral membrane sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 502 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 61/237 (25%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------- 48 M + + + + + H++ +P+ +IH LE+L + Sbjct: 260 MLERLELSFKAEQEAKEQMRRFVADASHELRTPLTSIHGFLEVLLRGAVNQPDKLEKSLK 319 Query: 49 -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----VDKRVQVS 103 ++ L+ +L + I+++ + + Sbjct: 320 SMLTESERMKKLIQDLLQLAKLDRTPQIELKEGRLDNLIKEMEPQLKMLAGLRKVTINLG 379 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---R 159 + +++LNLF A +D+ N +K NG Sbjct: 380 SALRCRFDEDKIKQVILNLFQNAVQHTEAEEGRIELSLKDTANGVEIEVKDNGPGIAAKH 439 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + + + + ++ L Sbjct: 440 LPYLFDRFYRCDSSRTRKHGGSGLGLSITRSIVELHGGTIKVATVEGKGTAFQVGLP 496 >gi|294500033|ref|YP_003563733.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294349970|gb|ADE70299.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 378 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 73/223 (32%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61 + L + LV L + + H+I +P+ ++ ++ L +E + +++ Sbjct: 154 EEKILQLDKLALVGQLAAGLAHEIRNPMQSVRGFIQFLFNENEQAEPFQKIVLDELDRMN 213 Query: 62 IRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSR 113 + L T V+ + + V+ V++ Sbjct: 214 ELINNFLLVTQPTAPKKEIVSIVEVIHDTVAFLKSEAALYNVEMNVRIEGAIPLVSIDPA 273 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ +NL A ++ + + ++ +++ + + ++ G+ Sbjct: 274 QMRQVFMNLLKNAIEAMEKKKRGEVNLIIKEWEGWALIDIQDTGSGIPLSIINKVGNPFF 333 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +E+ +L E ++ V++ L Sbjct: 334 STKDGTGMGLGLSICKTIINEHNGKLAIESDEN-GTVVTVKLP 375 >gi|196247851|ref|ZP_03146553.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196212635|gb|EDY07392.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 425 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + I H+I +P+ ++ ++++ E ++ + + L + Sbjct: 211 LAAGIAHEIRNPLTSLKGFMQVMQETREVNDDHVRIMLSELGRVNQIVSELLVLAKPQSP 270 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + + +I ++ + + ++LLN+ A Sbjct: 271 DYRPFLLEEAISYVINLIGHEATLNNVSISVRNNAPKACVYGDQNQIVQVLLNVMKNAIE 330 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG + + V ++++ + G E+ +I + + + Sbjct: 331 AMPNGGNLHVHVSEAESLIRLDIADTGIGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + E+K + E V+ Sbjct: 390 IVQEHKGTMQIESEVGKGTVVHLTFP 415 >gi|138894544|ref|YP_001124997.1| sporulation kinase A [Geobacillus thermodenitrificans NG80-2] gi|134266057|gb|ABO66252.1| Sporulation kinase A [Geobacillus thermodenitrificans NG80-2] Length = 418 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + I H+I +P+ ++ ++++ E ++ + + L + Sbjct: 204 LAAGIAHEIRNPLTSLKGFMQVMQETREVNDDHVRIMLSELGRVNQIVSELLVLAKPQSP 263 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + + +I ++ + + ++LLN+ A Sbjct: 264 DYRPFLLEEAISYVINLIGHEATLNNVSISVRNNAPKACVYGDQNQIVQVLLNVMKNAIE 323 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG + + V ++++ + G E+ +I + + + Sbjct: 324 AMPNGGNLHVHVSEAESLIRLDIADTGIGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 382 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + E+K + E V+ Sbjct: 383 IVQEHKGTMQIESEVGKGTVVHLTFP 408 >gi|116624978|ref|YP_827134.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228140|gb|ABJ86849.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 613 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 M + L +L L + HD + + + + L+ E E+M Sbjct: 235 MELEEQLR-QTQKLESLGVLAGGMAHDFNNLLTGVMGNASLIAEELGPESSAAPRLSEIM 293 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L + +D + I +I I +++ + Sbjct: 294 HASERAAQLVRQMLAYAGKGRFVMQHLDISEQIAGIAPLIRTSITPSVQLEFNLAENLPA 353 Query: 111 LSRERAKILLNLFMV-------AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++I + + + + S+ + + +K G + Sbjct: 354 VECDASQIQQLIMNLATNAGEAIESHGTVTITTSTHRTGSERQVVIEVKDTGCGMDETTR 413 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V+ + + + E + L Sbjct: 414 -ARIFDPFFTTKFTGRGLGLAAVLGIIRSHNGSISVESTPGRGSTFTVALP 463 >gi|315646921|ref|ZP_07900036.1| sensor histidine kinase [Paenibacillus vortex V453] gi|315277851|gb|EFU41175.1| sensor histidine kinase [Paenibacillus vortex V453] Length = 486 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49 + +I L + L S I HD+ +PI +I +E + + + Sbjct: 245 LQASIQLRLQDEENRKELISNISHDLRTPITSIKGYIEGIRDGVADTPEKMDKYVNIIYA 304 Query: 50 --MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102 + L +L + + VD + L D + E I ++ + Sbjct: 305 KAVDLDKLVGELFLYSKLDSKQVPFMFEPVDIIGFLDDCIDELQFILDEKGIQLEWMERT 364 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARF- 160 + E I + + +LN+ A + + K ++ NG Sbjct: 365 ADRVEVIADLEKLKRTVLNIIGNAQNFMDKQPKTIRVSIRISPEWVTVEIQDNGMGIPRD 424 Query: 161 --PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + S+ + + + + E L L++ Sbjct: 425 AIPHIFERFYRVEPSRNSSTGGSGLGLAIASQIIEGHGGAIWAESELGVGTSLFFTLKR 483 >gi|229095926|ref|ZP_04226903.1| hypothetical protein bcere0020_11760 [Bacillus cereus Rock3-29] gi|229102038|ref|ZP_04232751.1| hypothetical protein bcere0019_12030 [Bacillus cereus Rock3-28] gi|229114877|ref|ZP_04244290.1| hypothetical protein bcere0017_11740 [Bacillus cereus Rock1-3] gi|228668569|gb|EEL23998.1| hypothetical protein bcere0017_11740 [Bacillus cereus Rock1-3] gi|228681425|gb|EEL35589.1| hypothetical protein bcere0019_12030 [Bacillus cereus Rock3-28] gi|228687497|gb|EEL41398.1| hypothetical protein bcere0020_11760 [Bacillus cereus Rock3-29] Length = 402 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 864 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---------------- 44 MAK + + + + H++ +P+ AI+ E++ Sbjct: 604 MAKIRAEQANHAK--SEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEYAGDI 661 Query: 45 --IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ LI + I M L F + + + + + + RV + Sbjct: 662 LSSGQHLLALINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKMRVHL 721 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + R +ILLN+ A P GG +T+S + + + G + Sbjct: 722 PQLPDIQADYRALKQILLNILTNAIKFTPSGGTITVSAVPTDSFMHLYVADTGIGIAPKD 781 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ T + + L + RL + +S +L Sbjct: 782 -MERLARPFEQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVILP 838 >gi|315644820|ref|ZP_07897949.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315279762|gb|EFU43063.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 535 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 9/222 (4%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQL 52 M + ++ L + I H++ +P+ + L+L L + ++ Sbjct: 313 MKRTEEVLRNTEKLVFAGQVAVSIAHEVRNPLTTVKGMLQLANKDARLRHYDLIMSELER 372 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 L +I K + L + + + + ++ + Sbjct: 373 ANLMVGEFMILGKPQAAVLKQEDCGEILEEVLHLFAIQAELSGIEMTQCFVQNAVILCDR 432 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + ++ LN+ A +LP GG + I + + NG+ E +I + Sbjct: 433 NQIKQVFLNILKNAMEALPYGGNIHIRLDVQEGYQRVIFTDNGSGM-TEEVLQRIGEPFH 491 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + V + + R++ ++ + L Sbjct: 492 TTKPDGNGLGIMIVHRIMESHHGRIVIRSEEERGTSVEIGLP 533 >gi|325964129|ref|YP_004242035.1| PAS domain S-box [Arthrobacter phenanthrenivorans Sphe3] gi|323470216|gb|ADX73901.1| PAS domain S-box [Arthrobacter phenanthrenivorans Sphe3] Length = 556 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 21/224 (9%) Query: 12 MDLVA--LLCSRICHDIISPIGAIHNSLEL-LDE-----VGIEDEVMQLIRLSSMSAIIR 63 L A L S + H+ SP+ +I +++L LD+ + + +++ ++ Sbjct: 325 EALAANQELVSNVSHEFKSPLNSIIGNIDLVLDDVGADLPPQVAQRLLVVQRNAERLAAL 384 Query: 64 LKFMRLA-----FGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER 115 + + + + D + V Sbjct: 385 VSDLTASASTALNVHPKRTDLASLVETSLGSALAEAERAHIQLNTDVPSPLWAYADPLRI 444 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + L NL A P GG V+IS + K+ S+ G + Sbjct: 445 GQALDNLVSNAIKYSPDGGTVSISARSGKDWVQLSVSDTGMGMSREDTARVFKRFFRSEA 504 Query: 176 -----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + ++ + + E + L Sbjct: 505 ARKAAISGAGLGLSITKMIVEGHGGTITCESGQGKGSTFTLTLP 548 >gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 592 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 22/217 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + H++ +P+ +I L+ L E + + +++ + + Sbjct: 373 FVANVSHELRTPLTSILGYLDTLLESDIEDQKTKEKFLKIIKEETNRLSLLITDLLNLSK 432 Query: 76 SVDSLIGLGDIEQVIEDFIAVD-------------KRVQVSWTGEKIDLSRERAKILLNL 122 L + + + + + ++L+NL Sbjct: 433 IESQSFELYPGDFLKTFQKVYHLLEKNAQLKDININLEIEDDLPQVYMVREQVEQVLINL 492 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176 A GG + ISVQ ++ F ++ NG E +I + + Sbjct: 493 IDNAIKYSSSGGTINISVQKKSDKLYFEIQDNGIGIPVDE-QERIFERFYRVDKARSREL 551 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I V + ++ + E S L Sbjct: 552 GGTGIGLSIVRNIIKQHGSEIKVESRVGEGSKFSFYL 588 >gi|262173923|ref|ZP_06041600.1| sensor protein TorS [Vibrio mimicus MB-451] gi|261891281|gb|EEY37268.1| sensor protein TorS [Vibrio mimicus MB-451] Length = 968 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL E + +++ + S Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L NL + + IS F+++ +G + Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPEGQGIHFAVEDSGIGIAEQDQA 636 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + L L S L Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFTLP 689 >gi|229031295|ref|ZP_04187301.1| hypothetical protein bcere0028_33480 [Bacillus cereus AH1271] gi|228730053|gb|EEL81027.1| hypothetical protein bcere0028_33480 [Bacillus cereus AH1271] Length = 526 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 + + S L L + I H+I +P+ ++ L LL E + L Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEENKWYVDVMLSE 340 Query: 55 LSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 +S M +I + I + + Sbjct: 341 ISQMESITSQFMAMSKPQVLSIKTCNIQALIEEVVTFILPTAIMHSVHIIMDHFDYKHDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG V I + ++ + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNVYIQTKPFEDAFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|224476604|ref|YP_002634210.1| respiratory response protein SrrB [Staphylococcus carnosus subsp. carnosus TM300] gi|222421211|emb|CAL28025.1| staphylococcal respiratory response protein SrrB [Staphylococcus carnosus subsp. carnosus TM300] Length = 584 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 60/218 (27%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + E + + ++ + + + Sbjct: 362 ANVSHELRTPIALLQGYTESIVDGVVSEPDEIRDSLSIVLDETQRLNRLVNELLNVARMD 421 Query: 74 ----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERAKILLNL 122 + + + +E++ + + +Q+ + ++L NL Sbjct: 422 AEGLSVNKEVQPIDPLLERMQMKYRQQAEDLQIDINLAPNTEGQLWYYDTDRMEQVLTNL 481 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID-- 177 A G + IS +S +I + G+ F + + Sbjct: 482 VDNASRYTSPGDAIKISTSESDKYDILYVTDTGSGIAPEHIDLVFDRFYKVDASRKRGKE 541 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ + + L K Sbjct: 542 GTGLGLFICRMIIEAQGGTIDLKSRLGEGTTFIIKLPK 579 >gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 667 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 59/244 (24%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 A+ S A + + H+I +P+ + + +LL + E + Sbjct: 273 AREELLQAKSEAEAANTAKSEFLANMSHEIRTPMSGLIGNAQLLRLTQLNAEQTGYLTNI 332 Query: 57 SMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 A + + A S + + ++ I + + Sbjct: 333 ETDAKNLMSLINDVLDISKIEAGKLELESAPFSLRSCVAQLLKSQEARIAAKAIVLTHEI 392 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGN 156 +IL NL A +G D K FS+ G Sbjct: 393 AADLPDSLFGDQLRLKQILYNLVGNAIKFTAKGEIRVKVELLERHDDKARFCFSVTDTGI 452 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 PE +I + + L + + E + S Sbjct: 453 GI-RPEAREKIFAPFIQADASVTRRFGGTGLGLSICSRLVQQMGGGITVESEEGKGSTFS 511 Query: 211 ALLE 214 L Sbjct: 512 VTLP 515 >gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 948 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] Length = 878 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 62/234 (26%), Gaps = 24/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S ++ + + H+I +P+ I E+L + + +++ S+ Sbjct: 377 AKENAEAASQAK--SVFLANMSHEIRTPLNGIIGMAEILSDSHLSSSQKEILSDIDTSSH 434 Query: 62 IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWT 105 + L+ + + ++ V+ +V + Sbjct: 435 ALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNMLTSKALKQDVELKVDFADNLP 494 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L+NL A +G + + + + + +G + Sbjct: 495 DNIEIDDFRFKQVLMNLLSNAVKFTQQGSVSVELLIE-GQQLVCHVADSGVGISPEKLTE 553 Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G++ + L + + + + Sbjct: 554 IFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISVSSTPGVGSRFTVSVP 607 >gi|254000326|ref|YP_003052389.1| histidine kinase [Methylovorus sp. SIP3-4] gi|253987005|gb|ACT51862.1| histidine kinase [Methylovorus sp. SIP3-4] Length = 559 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 + ++ + L + + + H++ +P+G + +S + LL E + +E ++ Sbjct: 328 LERSKENLTRAAKLAVVGEMAAAMSHEVRTPLGILRSSAQVLLREPTLSEEGREVCGFII 387 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGE 107 K + D + ++ + + Q+ Sbjct: 388 SETERLNKLVSTLIDSARPRLPNFTPVDISQLCSQSAAMLRMQAEKKHIALETQLDAGLI 447 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + ++LLNL + A LP GG++ + + ++ NG E+ Q+ Sbjct: 448 AICDPEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGI-PEEQREQV 506 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + + + LL Sbjct: 507 FDPFFTKRSGGIGLGLSVVRQIVQAHHGSIRAITSTLGGAEFRILLP 553 >gi|153007209|ref|YP_001381534.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp. Fw109-5] gi|152030782|gb|ABS28550.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. Fw109-5] Length = 641 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 61/239 (25%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58 + +N+ M+ V L + HD + + I ELL + + Sbjct: 258 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVILGYSELLMRDLPAGDARSRESAEGIVE 316 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +A L R + + D+ +++ I + + Sbjct: 317 AAHRAAGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLARAIGERIELTTRLQDGLWPV 376 Query: 112 SRERAKILLNLFM---VAHASLPR-------------GGKVTISVQDSKNENIFSLKING 155 + ++ L A ++P + +++ G Sbjct: 377 LADADQLAQVLLNLAVNARDAMPDGGPLAIETANVELSEPPRDLPIPAGRYVSLAVRDGG 436 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I D + + V + + + + +A L Sbjct: 437 CGM-TEEVRSRIFDPFFTTKETGTGLGLATVYGIVRQAGGAIRVDSEPGQGATFTAFLP 494 >gi|119899005|ref|YP_934218.1| putative sensory box sensor histidine kinase [Azoarcus sp. BH72] gi|119671418|emb|CAL95331.1| putative sensory box sensor histidine kinase [Azoarcus sp. BH72] Length = 393 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 18/234 (7%), Positives = 62/234 (26%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMD---LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----Q 51 + L++ L A+ + + + H + +P+ A L + + + Sbjct: 144 TETHRMRLAAERNERLAAMGEMVAGLAHQLRTPLAAALLYTGNLRQPELGAPERAKVADR 203 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + + A G + + ++ + + Q+ ++ Sbjct: 204 AIERLRYLERLIRDMLLFARGDSLGRQHFGVCDLVAELTHTLEPLARARQIEFSSACSCG 263 Query: 112 ----SRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIFSLKINGNLARF 160 +R + L + ++ + + + F + +G Sbjct: 264 ELSLYGDRKALGGALTNLLENAIQATEAGGTVSCSASCAQGADGEQVRFVVSDSGRGI-P 322 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + +A + + + L Sbjct: 323 AELQERLFEPFFTTRAEGTGLGLAIARGVARGHGGDISLSSAPGQGSTFTLNLP 376 >gi|120601142|ref|YP_965542.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|120561371|gb|ABM27115.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] Length = 486 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 + + L +L L S I H + +P+ I S ++L + + +++ Sbjct: 250 LENRQNQLVQEKKLASLGVLTSGIAHQLNNPLNNISTSCQILQEDIGSGDAELHARMLRN 309 Query: 53 IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTG 106 I + + L+F R + ++ + + V Sbjct: 310 IHQEVLRSRDIVKGLLEFAREKDFSLVPQRLADVVERAVSLVSSEVPAGVTLSASVPPDM 369 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163 ++ + L+NL + A ++P + ++ ++ G PE Sbjct: 370 VVPLDAQHMQEALINLLINAIQAIPAPPGTITVSATRLPGRDMVALRVEDTGTGI-PPEH 428 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + V + ++ R+ E L Sbjct: 429 LGRIFDPFFTLKAVGKGTGLGLSIVFGVVKKHGGRVTVESEPGKGTAFIIHL 480 >gi|77919621|ref|YP_357436.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77545704|gb|ABA89266.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 613 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 66/230 (28%), Gaps = 18/230 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 +++ +L + S + H++ +P+ AI + L D + + + +I+ S Sbjct: 381 RDVSERQRIEELKDDMLSSVSHEMRTPLTAIMGFTDYLLKSNDRPERQKDYLSIIQQQSE 440 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108 ++ G V+ L L + + D+ Sbjct: 441 RLKELVENHLNLQRLRAGHGVGAIHPVEVLPLLHGVSNMFSSARGRDRIRIQCPEDLPPV 500 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 + + L NL A ++ + + + + + +K G F Sbjct: 501 RGDENQLYRALYNLLSNAIKYSSEDQEILLGARRADDAAVLFVKDQGVGIPNEHQATIFD 560 Query: 166 QIVD-GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + R+ + + L Sbjct: 561 RFFRVPAGDHGMRGSGLGLSLVQEIIKAHNGRIWLDSVPGQGSCFYLKLP 610 >gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396] gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396] Length = 1437 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++ + + + H+I +P+ AI + LL +E+ + + SA Sbjct: 774 LREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRTNLEERQQDYVHKAESSA 833 Query: 61 IIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + + +G+ + + + V + Sbjct: 834 RALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITANLGDKPLEVLFDIDPKI 893 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160 +IL+NL A +G S+ E FS++ G Sbjct: 894 PDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRLKSEEEDRLVLSFSVRDTGIGI-S 952 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ +I +G + + L + E + V + Sbjct: 953 AEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIAAESEEGEGSVFRFSI 1011 >gi|51246743|ref|YP_066627.1| Ntr two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50877780|emb|CAG37620.1| related to two-component system sensor histidine kinase (Ntr family) [Desulfotalea psychrophila LSv54] Length = 499 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 65/222 (29%), Gaps = 17/222 (7%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLK 65 + LV + + + H+I SP+G + ++ ELL + + L + Sbjct: 277 QAERLVHLGTMVATVSHEIKSPLGIVRSTAELLQKRIKKIAPGNEMLAGIIIDETTRLND 336 Query: 66 FMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + + + V A ++ + + + Sbjct: 337 IVIEFLDFARPQKMNFVVATVDEIITKVLTFVTPQLKAQGVKLVTDFAPDLRATMLDQDA 396 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LLN+ M A ++ GG++ I+ + + ++ G E QI + Sbjct: 397 FYRALLNIVMNALQAMEEGGELQITTANLDDGAVLLRVRDTGRGI-SEENQAQIFNPFFT 455 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + Sbjct: 456 DRHKGTGLGLAITSNIIETHGGTVTVTSEPGLGSCFAIKLPR 497 >gi|226943192|ref|YP_002798265.1| sensory histidine protein kinase [Azotobacter vinelandii DJ] gi|226718119|gb|ACO77290.1| sensory histidine protein kinase [Azotobacter vinelandii DJ] Length = 488 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57 A+ ++ L + + S + HD+ +P+ + + L + ++ +R + Sbjct: 245 ARETELRRAAESLRSSILSALSHDLRTPLTVMVGLADTLALGKASPERQKNMLNALRNQA 304 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTGEKID 110 +S + + L D+ + + Sbjct: 305 LSINQLVTNLLDMARLRSGNIELNEAWQPIDEVIGATLRQVRTQWKDREITLDIPLGLPP 364 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164 L + ++L NL A P V + V+ + + G E F Sbjct: 365 LCFDAVLVERVLWNLLENAIKYSPADTPVELVVRRFGDWLDVMVCDWGPGLPPEGAEELF 424 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G ES I + +A + ++L E L Sbjct: 425 GLFRRGQTESNIPGVGLGLAIARSIAEAHGGQVLAENRMGGGACFRLRLP 474 >gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 936 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 66/228 (28%), Gaps = 20/228 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI +LL D+ +++++ ++ Sbjct: 695 AKERAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLAESDDREERFGYLKIVQENNE 752 Query: 59 SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + F + ++ L + + +V++ + + Sbjct: 753 LLLQLISDILDLSKIEAGTFKFINDRVNVYQLCNEIVRSYSIKIKNHQVKLIFDEQSPVY 812 Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L N A +G +E + G EK Sbjct: 813 YITSDKNRVIQVLSNFINNALKFTSQGTITLGYELLPNHELKLYVCDTGQGI-AEEKQKV 871 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I D V + + + L + ++ + Sbjct: 872 IFDRFVKLNTFVQGTGLGLSICKSLVKQMGGQIGVNSKEGEGSCFWFT 919 >gi|297569826|ref|YP_003691170.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925741|gb|ADH86551.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 489 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 74/234 (31%), Gaps = 21/234 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 + + L S + A+ L + + H++ +P+ + + + + E+ Q Sbjct: 256 QRQLEERLRQSEKMAAIGGLAAGVAHELGTPLSLVAGKAQRMLRRQQSPENAAAFQEIRQ 315 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKID 110 + S L F R VD I QV ++ A ++++ + Sbjct: 316 AVERMSHIVRQLLDFGRNNQPRRKLVDPEIIAGNAAAQVRDEAEAAGVKIKLEDSQPPPR 375 Query: 111 LSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEK 163 L + ++ L + ++ V + + F ++ NG E Sbjct: 376 LRLDPIRLEQALVNLLRNAIQACQAGGAASPLVRLRWFTDDQQAGFQVEDNGPGI-AKEL 434 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++++ + + + V ++ + + D + L K Sbjct: 435 YSRLFEPFFTTKEVGRGTGLGLAVVHSAVQDHGGSITVDRSDSGGACFTIYLAK 488 >gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1125 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 20/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ SP+ I +LL ++++ +L S + + Sbjct: 763 AVVSHELRSPLNPILGWSQLLKRGTLDEKRTKLALASIERNAQLQVQLIGDLLDISRILR 822 Query: 80 LIGLGDIEQVI-----------EDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMV 125 + D V +K + + T + + +++ NL Sbjct: 823 NKLILDKAPVDLESIIFAALETVKQATAEKSIHIETTITPCTVVGDAVRLQQVVWNLLSN 882 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA-----RFPEKFTQIVDGNVESTIDSHD 180 A PR G +T++V +E + + G F + + + + Sbjct: 883 AVKFTPRDGSITVTVTADVSEVVIEVSDTGKGIAADFLPFVFEHFRQENYSTTRKFGGLG 942 Query: 181 IQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215 + V + + + ++ S L + Sbjct: 943 LGLAIVRQIVDLHDGTVAVRSPGENQGTTFSVCLPR 978 >gi|312138243|ref|YP_004005579.1| two component system sensor kinase phor [Rhodococcus equi 103S] gi|37813699|gb|AAR04622.1| PhoR [Rhodococcus equi] gi|311887582|emb|CBH46894.1| two component system sensor kinase PhoR [Rhodococcus equi 103S] Length = 464 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 57/216 (26%), Gaps = 18/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + H++ +P+ I EL + D M + R+ + + L L Sbjct: 248 FVADASHELRTPLATIRGFAELYRQGAAPDPEMVMSRIEDQAQRMGLLVEDLLLLARMDA 307 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------------DLSRERAKILLNLFM 124 ++ + AV S + +++ NL Sbjct: 308 QRPFERHPVDLLAVAADAVHDARARSPQRRIMLEVLPGSAPAEVLGDDARLRQVVGNLVG 367 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179 A P G VT+ V + + + G + F + + T Sbjct: 368 NALDHTPAGADVTVRVGTDGADAVVEVADTGPGLAEGDAARVFERFYRADASRTRTSGGS 427 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + + L + Sbjct: 428 GLGLSIVAAIVAAHGGTVDVDSAPGNGATFRVRLPR 463 >gi|116748066|ref|YP_844753.1| histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697130|gb|ABK16318.1| histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 313 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 61/234 (26%), Gaps = 26/234 (11%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----------------D 47 + S L A+ L S I H+I +P+ I +E + + Sbjct: 72 RQLIQSQKLAAIGELSSGIAHEINNPLAIIGQEVEWMKHQAKDAGTGGGGNLAEFLDSLM 131 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTG 106 E+ + + L F R + D + D+ ++ + + ++ + Sbjct: 132 EIGKQVDRCREITHKLLDFARKREPLIQTTDINKLVEDMVRLVEREAVKRKIKIDRDYQP 191 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPE 162 + + + ++ + + + S+ G E Sbjct: 192 DLPVVQTDAPQLRQVVLNLLINANAAIDAGGCITVATRVVDNGYVELSVSDTGCGI-PEE 250 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + R+ + L Sbjct: 251 NRDKIFDPFFTTKPPGKGTGLGLSICHGIITKLDGRITVASEVGKGTTFAVRLP 304 >gi|94985370|ref|YP_604734.1| response regulator receiver sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94555651|gb|ABF45565.1| response regulator receiver sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 416 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 18/215 (8%), Positives = 56/215 (26%), Gaps = 2/215 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +++L + H++ +P+ A+ L + + +Q + + + Sbjct: 176 LEEQAQQLEEALNLQKTFLAETSHELRTPLTALLGYLRRAEREVGGSQTLQDAQRVAENM 235 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + ++ ++ + E I ++ + Sbjct: 236 TRLVNDLLQLSRGELVQGIEMHFVNLGNLVRQVGRDYGVKVKAPDLEIIGDPGRLTQVFV 295 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH- 179 NL A V++ V ++ +G +I D Sbjct: 296 NLVSNAIRVCGTPELVSLEVWQEGRHACAAVIDHGPGI-PDHIKPRIFDKFYRGKEAGSA 354 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + H + + L Sbjct: 355 GLGLTIAQQVVHTHGGTIEVLDTPGGGATFRVCLP 389 >gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 581 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 22/226 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKF 66 + + I H++ +P+ +I +E L + + +I+ + + Sbjct: 355 EKVRTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDHCKYFLGIIKQETDRMTRLINE 414 Query: 67 MRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116 + VD + + + +V + + Sbjct: 415 LLYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKVNLKLPENIAHILSNEDS 474 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 +I++NL A P GG ++I V+++ + ++ NG E F + + Sbjct: 475 LLQIMINLLDNAIKYTPEGGTISIMVEETLENVLITVADNGIGIAEDELDRIFERFYRVD 534 Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + V L + + E + + + K Sbjct: 535 RARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTVYIPK 580 >gi|313202284|ref|YP_004040942.1| histidine kinase [Methylovorus sp. MP688] gi|312441600|gb|ADQ85706.1| histidine kinase [Methylovorus sp. MP688] Length = 539 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 + ++ + L + + + H++ +P+G + +S + LL E + +E ++ Sbjct: 308 LERSKENLTRAAKLAVVGEMAAAMSHEVRTPLGILRSSAQVLLREPTLSEEGREVCGFII 367 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGE 107 K + D + ++ + + Q+ Sbjct: 368 SETERLNKLVSTLIDSARPRLPNFTPVDISQLCSQSAAMLRMQAEKKHIALETQLDAGLI 427 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + ++LLNL + A LP GG++ + + ++ NG E+ Q+ Sbjct: 428 AICDPEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGI-PEEQREQV 486 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + + + LL Sbjct: 487 FDPFFTKRSGGIGLGLSVVRQIVQAHHGNIRAGTSTLGGAEFRILLP 533 >gi|302342972|ref|YP_003807501.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] gi|301639585|gb|ADK84907.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] Length = 517 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 66/228 (28%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57 + + S + A+ L + + H+I +P+ A+ ++ L + + + +++ Sbjct: 284 LERLRREMAQSQHMAAVGRLAASVAHEIRNPLSALRGLVQFLVKDQPKDSRQAEYGKVAV 343 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGD-----------IEQVIEDFIAVDKRVQVSWTG 106 + + Y + D + Sbjct: 344 EEVDRLERVVSGLLEYARPKEPRRVTMDLAESAESTLALMHDDPRAQGVRITVSAADDLP 403 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++LNL + A +L G + + ++ + +G + + Sbjct: 404 LIQADPDQIRQLILNLVVNALEALDGRGSLDLRLRREGKFLVLEAADDGPGL-PDDVGEE 462 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +A + +L D L+ L Sbjct: 463 LFNPFFSTKERGSGLGLAIARRIAQAHGGQLFAGRSDLGGASLTLRLP 510 >gi|269926605|ref|YP_003323228.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790265|gb|ACZ42406.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 590 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 17/212 (8%) Query: 20 SRICHDIISPIGAIHNSLE----LLDEVGIEDEVM----------QLIRLSSMSAIIRLK 65 S I HD+ +P+ + + LL E G+E E QL R+ Sbjct: 364 SLISHDLRTPLSVVIGHSQILKTLLREKGLEREERNVDAIIGGGRQLTRMVENLLDRASL 423 Query: 66 FMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 VD IE+V + + ++L NL Sbjct: 424 EAGAVKLKLQRVDLESWLPDAIERVTVPANRSRVHLVIERGCTLDVDVDRIERVLGNLVT 483 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQ 182 A V + + S N I S+K G + + + + Sbjct: 484 NALKYSAPETDVIVRAKVSSNNLIISVKDQGPGIKPEDVPKLFQKYYRTNRGRNEGLGLG 543 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y L+ + + E S L Sbjct: 544 LYISRLIVEAHGGHIWVESEPSKGSTFSFSLP 575 >gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 538 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 67/238 (28%), Gaps = 26/238 (10%) Query: 1 MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53 M ++ + ++ L + + + H++ +P+ +I + ++ + + + + ++ Sbjct: 286 MEQD-NIKIKELERLKSEFLATMSHELRTPLNSIIGFVSMILQGISGDINEEQRKQLSMV 344 Query: 54 RLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 SS+ + + + + ++ +I Sbjct: 345 HSSSIHLLNLINDILDISKIEAGKMSFSKDRFNIKDVISEVVQNVSPLISKKEVKLITEI 404 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 E +ILLNL A +G D ++ S+ G + Sbjct: 405 PDEIPEVYSDKTRVFQILLNLVSNAIKFTEKGEIRIKCEVD-GDKLKISVSDTGKGIKEE 463 Query: 162 EKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + G+ + Y L + E + L Sbjct: 464 DMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFTLP 521 >gi|99081104|ref|YP_613258.1| histidine kinase [Ruegeria sp. TM1040] gi|99037384|gb|ABF63996.1| histidine kinase [Ruegeria sp. TM1040] Length = 346 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 15/238 (6%), Positives = 57/238 (23%), Gaps = 27/238 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSM 58 +I + + + + H++ +P+ A+ +E L D ++++ + Sbjct: 108 DITDREQASQMRRDFVANVSHELRTPLTALMGFIETLRGAARNDAAARDRFLEIMEGEAS 167 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---------DKRVQVSWTGEKI 109 + + ++ + + Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPKERIDLLAHLQSTIKSLAPLAESGGTQLTLDAPAGAV 227 Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + ++ + +L G + + +G Sbjct: 228 EIPADPDQLQQVFTNLIENALKYGGDNVTVSLMALERDPALRCPAVRVQVIDDGPGIDPV 287 Query: 162 EKF---TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL E + +L Sbjct: 288 HLPRLTERFYRADNHRSRELGGTGLGLAIVKHIINRHRGRLRVESDLGKGATFTVILP 345 >gi|298241796|ref|ZP_06965603.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554850|gb|EFH88714.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 69/244 (28%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMD-----------LVALLCSRICHDIISPIGAIHNSLELL-----DEVG 44 +A+ I L +++ L + H++ +P+ + +SLEL+ + Sbjct: 227 LARTINGMLHALEEAYQHVQQVNDLQRRFLADASHELRTPLTIMLSSLELMKKEEGRDPE 286 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + ++ I + + L I +I + Sbjct: 287 FQTNALENISTEAERMARLTTRLLLLARTDARAPFAPQPLLIVDIISEAYRQGCPSHRKI 346 Query: 105 TGEKID-----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + + ++ L L A P GG+VTI + + E + ++ Sbjct: 347 AMQCQGLETLEDAVVSGNADYLKQVFLILLENACKYTPDGGQVTIIGERKERELVVTVAD 406 Query: 154 NGNLARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G + F + S + + + ++ + E + Sbjct: 407 TGIGIAQDDVPRLFERFYRAPNASIQPGMGLGLSIALSIVEQHNGTIKVESTLGQGSRFT 466 Query: 211 ALLE 214 L Sbjct: 467 ISLP 470 >gi|292490729|ref|YP_003526168.1| ATP-binding region ATPase domain protein [Nitrosococcus halophilus Nc4] gi|291579324|gb|ADE13781.1| ATP-binding region ATPase domain protein [Nitrosococcus halophilus Nc4] Length = 555 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 60/226 (26%), Gaps = 20/226 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 + + L +L L + I H+I +P+GAI ++ +LL E E ++++I Sbjct: 319 LARQAQQLKLASLGRLTASIAHEIRNPLGAISHASQLLRESSTLNPSERRLLEIILNHCG 378 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKID 110 +K + S + L + + + Sbjct: 379 RVNDIIKNVLQLSRRKHSRLEALLLKPWLLHFLEEFCRTHGIDRAAVVLQVDPGKVRVHV 438 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFT 165 + +IL NL A + + G E Sbjct: 439 DPSQLHQILWNLCDNARRHSQDSDGSPCLQISVGIKANTGQVFLDVMDRGPGI-AKEAVD 497 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 +I + + + Y L+ N L + Sbjct: 498 KIFEPFFTTQGAGTGLGLYLARELSECNDASLEYYPVPGGGSCFRL 543 >gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 592 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 61/220 (27%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ ++ E L + + ++ + +I S + + Sbjct: 367 FVANVSHELKTPVTSLKGFTETLLSGAVHDEQLREKFLTIISNESERLESLIHDLLELSK 426 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + L + + + + +V + ++ +N Sbjct: 427 IEGSQFVLNWDLVNIDVLLSDVFMMLESKAQNKNIHFSKEVIGDTVIEADAHRIKQVFIN 486 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A P G+V + V + I ++ G E +I + Sbjct: 487 IINNAIMYTPNDGEVHVKVIEKAETVIVEVQDTGIGISKKEIP-RIFERFYRVDRARSRN 545 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L ++ + + +K Sbjct: 546 SGGTGLGLAIVKHLIEAHRATMSVDSEVGQGTTFKMEFKK 585 >gi|281356726|ref|ZP_06243217.1| integral membrane sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281316853|gb|EFB00876.1| integral membrane sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 532 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRL 55 M N + + + + + HD+ +P+ + E+ E E + Sbjct: 300 MNSNTEKLFNELKM---VTDNVAHDLRTPLTRMRGLAEVTVEGPPELGRYRELAGVVADE 356 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 S I + + + L D+ ++I + + + Sbjct: 357 CSQMIQIINTMLEITKTESNIETPEAELLDLREMIARAAELFQPLAEDGDVRLAAELPDA 416 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + +++ NL A P GG +T+S+ +N +F + G R + Sbjct: 417 AVPFRGDRIKLQRVVSNLIDNALKFTPPGGTITLSLTVKENTILFRVADTGCGIREEDLE 476 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + T + + V + + + + L K Sbjct: 477 HIFERFFRSDASRTRPGNGLGLALVRAIVRAHHGEITAASKLGEGSCFTVELPK 530 >gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 498 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 70/245 (28%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEV 49 +N ++ L + + + H+ +P+ AI +L + + + Sbjct: 250 EQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQKRN 309 Query: 50 MQLIRLSSMSAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--- 105 +Q I + + + + + G + + + +++++ +A + Sbjct: 310 LQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKLVV 369 Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGN 156 E ++ +I+LNL A G + + S+K G Sbjct: 370 DAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDTGI 429 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E +I + + LA R+ + + Sbjct: 430 GI-AQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTFT 488 Query: 211 ALLEK 215 L + Sbjct: 489 LHLPR 493 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 57/239 (23%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K L S + + + H++ +P+ + LELL + + ++++ S Sbjct: 259 LKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTELTPNQREYVQVACGSG 318 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + Y + Q + + V + Sbjct: 319 ETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLAAQAQRKDLEIGYVVAENV 378 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160 + +IL+NL A +G + K F ++ G Sbjct: 379 PLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEKKAKKLVLHFEVRDTGIGIPL 438 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L L E D + + Sbjct: 439 EFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDLGVENNLDKGSLFWFTVP 497 >gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] Length = 675 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 73/234 (31%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL ++ + + + + Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLAAIERSA 344 Query: 62 I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + ++ +G V I + + + + +A +K++ + Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMAREKQITIDTEYPPVP 404 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG + +SV S + +++ G P Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASPEGLVATVRDTGIGIEPTFLPHV 464 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 F + + + L + R+ + ++ L Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITATSNGTNLGTTMTVTLP 518 >gi|196044454|ref|ZP_03111689.1| sporulation kinase A [Bacillus cereus 03BB108] gi|225865624|ref|YP_002751002.1| sporulation kinase A [Bacillus cereus 03BB102] gi|196024489|gb|EDX63161.1| sporulation kinase A [Bacillus cereus 03BB108] gi|225787607|gb|ACO27824.1| sporulation kinase A [Bacillus cereus 03BB102] Length = 510 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEIDEEHKWYIDVMLSE 334 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 700 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 66/230 (28%), Gaps = 23/230 (10%) Query: 8 NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 + ++ + + + H++ +P+ I +LL + ++ E + S Sbjct: 170 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 229 Query: 64 -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110 + + G +D D+ + + + + + ++ Sbjct: 230 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 289 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEK---F 164 + +IL+NL A GG S ++ + +++ G F Sbjct: 290 DADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEEQGEGLVLTVEDTGPGIPEERIPILF 349 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ ++ + + L + +L Sbjct: 350 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTMGRGSTFRVMLP 399 >gi|322435171|ref|YP_004217383.1| histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321162898|gb|ADW68603.1| histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 657 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 22/234 (9%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----------D 47 AK + L S L A+ L + + H++ +P+ A+ LELL Sbjct: 407 AKQLEQELDVSRRLAAIGRLTAGVGHEVKNPVNAMVVHLELLRAKLEAAGQGRGFLQGAQ 466 Query: 48 EVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRV 100 + ++ F R + +D + + + V+ R Sbjct: 467 RHVDILASEMERLDRVVQTLADFTRPMELHLSEIDLREVVERVVDLTGAEMAEHNVEVRC 526 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +LNL + A ++ +GG + + V+ + + + G Sbjct: 527 ALEPAVMVRADGEMLRQAMLNLMLNAMQAMEQGGILRVGVRRDGDTALLVVADEGPGI-P 585 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + I + + + + L Sbjct: 586 PELMPRIFELYFTTKPKGSGIGLAMTYRIIQMHGGAMEVTSEVGAGAAFTMRLP 639 >gi|229916990|ref|YP_002885636.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229468419|gb|ACQ70191.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 381 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 M ++ + + + + HD +P+ AIH ELL +++ ++ Sbjct: 133 MWRDQTEAVRFEERKDSFLAELSHDFRTPLTAIHGYTELLMTRHQGSEKSYQMLTQVKQE 192 Query: 57 SMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 S + + D L D+ + + + Sbjct: 193 SERLERLVDNFLDYQKERYTADQLTVTTFALRPLLEDVMSSYQTTSPLHTVTFETNDVSI 252 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ ++L NL A P GG V V + I S+ G Sbjct: 253 QADEKKLRQLLHNLIGNAIKYSPDGGTVHTRVFECAGTIILSVSDTGIGIPEEALPYVFD 312 Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I + +A + + + + + L Sbjct: 313 EYYRVESAAHQSIKGTGLGLRICKRIAEAHGWGIHADSVYGEGTTFTIEL 362 >gi|223935238|ref|ZP_03627156.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223896122|gb|EEF62565.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1060 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 66/242 (27%), Gaps = 30/242 (12%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 K + L MD + L + HD + + I LL G ++ M Sbjct: 672 QKRLEDQLRHSQKMDAIGQLAGGVAHDFNNILTVIQGHASLLRSSGKLEDFMITSAEQIV 731 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Q ++ L F R +D + + ++ +++ + D +Q ++ Sbjct: 732 QAADRAAGLTRQLLTFSRRQMMQPKLLDLNVVVSNMTKMLGRILGEDIALQFNYAPNLPL 791 Query: 111 LSRE---RAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLK 152 + + ++LLNL + + ++ G + + + Sbjct: 792 VHADSGMMEQVLLNLAVNSRDAMRGGGQLTVKIFGMEITGLEMNEHPEGRTGHFVCLKVS 851 Query: 153 INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G I + V + +++ + Sbjct: 852 DTGCGIEPKNLPHIFEPFFTTKAIGKGTGLGLATVYGIVKQHQGWIEVTSSPGVGTTFQV 911 Query: 212 LL 213 L Sbjct: 912 FL 913 >gi|149276959|ref|ZP_01883102.1| sensor histidine kinase with PAS signal sensor domains [Pedobacter sp. BAL39] gi|149232628|gb|EDM38004.1| sensor histidine kinase with PAS signal sensor domains [Pedobacter sp. BAL39] Length = 813 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 56/215 (26%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + + H++ +PI ++ L++L+ + + + S K + Sbjct: 598 AMVSHELKTPITSVQAYLQILERNARAQDNAFVTGILEKSVSQIKKMTTMIDGFLNVSRL 657 Query: 71 -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAKILLNLFM 124 F D L + E+ + + + + + +++ NL Sbjct: 658 ESGKIFIERKPFDMAGLLKESEEESKTMFSSHHIIYAPVLPMVIVADRNKIGQVINNLMS 717 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----TIDSH 179 A G + + + S+K G E I Sbjct: 718 NAVKYAVAGSSIWVKCEYIGGYVQVSVKDEGMGIAQEEINKLFDRYFRSRYVTEGNISGF 777 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y + + ++ E + Sbjct: 778 GIGLYLSAEIIQRHGGKIWAESELGKGSTFYFTIP 812 >gi|229166865|ref|ZP_04294612.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621] gi|228616493|gb|EEK73571.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621] Length = 351 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 74/233 (31%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + L + + + +K +++ +K+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ K S+ G + Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ ++ E ++ + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 346 >gi|209963477|ref|YP_002296392.1| Nitrogen regulation protein NtrY [Rhodospirillum centenum SW] gi|209956943|gb|ACI97579.1| Nitrogen regulation protein NtrY [Rhodospirillum centenum SW] Length = 764 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 27/226 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQLIRLSSMSAIIRLKF 66 A + RI H+I +P+ I S E L + + I + Sbjct: 514 ADVARRIAHEIKNPLTPIQLSAERLRRKYLKEIQSDPETFRTMTDTIVRHVDDIGRMVDE 573 Query: 67 MRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 V L ++ + E + + + +I L Sbjct: 574 FSAFARMPSPVMKPTNLQELCRQAMLLHATAHPAIHFEADLPSEPLVVICDGRQIGQALT 633 Query: 124 MVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + G+V + ++ + ++ NG ++ ++ + Sbjct: 634 NLLKNAGEAVEGREETAGGKTLPAGRVMVQLRADEERVTLLVEDNGKGL-PTDQRDRLTE 692 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + V + ++ L E + +L + Sbjct: 693 PYVTTRAKGTGLGLAIVKKIMEDHGGALTLEDRPGGGARVGLVLPR 738 >gi|270308281|ref|YP_003330339.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154173|gb|ACZ62011.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 1258 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQL 52 + S L A+ + + I H+I +P+ + +L E E +Q+ Sbjct: 884 EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPRDVMEQLQI 943 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107 I S + +K M V + + ++ + V + Sbjct: 944 INSGSQRVVDIVKRMLTFARQAKPVRHQVNITELIDNTLELRSYVLKTANIAVIKQYEPG 1003 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFP 161 L+ + ++ + + + K + + S + +G P Sbjct: 1004 LPLLTVDPGQMQQVILNLILNAEYSMKKAHEKGTLNITVSKAGDRVKLSFRDDGLGM-PP 1062 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + E+ + E L Sbjct: 1063 EILAKLFQPFFTTKEPGEGTGLGLSLSHGIILEHGGTIRGESTPGEGAEFIIELP 1117 >gi|154498434|ref|ZP_02036812.1| hypothetical protein BACCAP_02423 [Bacteroides capillosus ATCC 29799] gi|150272502|gb|EDM99687.1| hypothetical protein BACCAP_02423 [Bacteroides capillosus ATCC 29799] Length = 490 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 68/224 (30%), Gaps = 19/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 S L + + + H++ +P+ AI+ E + + + M +I + + Sbjct: 264 QSEKLKSEFIASVSHELRTPLTAINGWAETIQNGEVRDAEDVRKGMSIIVSEARRLTNMV 323 Query: 65 KFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111 + + VD L D ++F + + E+ Sbjct: 324 EELLEFSRIEDGRFTLSIEPVDIKAELEDAVYTYKEFFRKEGIILNYEDTEEEFPTIEAD 383 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-QIVDG 170 ++ NLF A G ++ +++ +++ I +++ G E + Sbjct: 384 PERLRQVFSNLFDNAAKHGGSGKRIDTAIRREEDQIIITIRDYGPGIPEEELPHVKYKFY 443 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + L + V++ L Sbjct: 444 KGSSKARGSGIGLAVCDEIITRHNGTLDIGNAEGGGCVVTIHLP 487 >gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1334 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 821 NISHEFRTPLTLIVSQLEMLMERSDIQPLVYSKLVNIHRNTLRMKRLITELLDFRKQEQG 880 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124 + S ++ D + A K++ + + E + K++ NL Sbjct: 881 FEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVVQLEKVIYNLLS 940 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181 A P GG +++SVQ+ N + ++ G + F + + + I Sbjct: 941 NAFKYTPLGGTISLSVQEYGNSVMVTVSDTGVGIAEESLDKIFDRFYQVDSMNNQKGTGI 1000 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ ++ L Sbjct: 1001 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1033 >gi|312126426|ref|YP_003991300.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] gi|311776445|gb|ADQ05931.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] Length = 357 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 20/231 (8%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 N+ NL + ++ S I H+I SP+ +I L + +I + Sbjct: 119 NMAANLKAMEEMRQEFISNISHEIGSPLTSIRGFASALKNENLSFEQRKHYLDIIENECI 178 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDL 111 + + L + + +K + ++ + ++I + Sbjct: 179 RLSKLSENLLRLTMLDSEQYPLHLTTYRLDKQIQLTILEFEPQWSEKELDITLSLDEIII 238 Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ ++ NL A +GG + I + + I ++ G + Sbjct: 239 TADQDLLKQVWQNLIDNAIKFTLKGGAIKIQLYKKETYAIVTISDTGIGISEQDLPRIFE 298 Query: 169 DGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ L Sbjct: 299 RFFKADKSRNRAVSGSGLGLSIVKKIVELHNGKIFVNSQLGKGTEFIIQLP 349 >gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] Length = 1334 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 821 NISHEFRTPLTLIVSQLEMLMERSDIQPLVYSKLVNIHRNTLRMKRLITELLDFRKQEQG 880 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124 + S ++ D + A K++ + + E + K++ NL Sbjct: 881 FEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVVQLEKVIYNLLS 940 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181 A P GG +++SVQ+ N + ++ G + F + + + I Sbjct: 941 NAFKYTPLGGTISLSVQEYGNSVMVTVSDTGVGIAEESLDKIFDRFYQVDSMNNQKGTGI 1000 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ ++ L Sbjct: 1001 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1033 >gi|253700700|ref|YP_003021889.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775550|gb|ACT18131.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1260 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 67/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 K + L + + A+ L + HD + + I +LL ++++ Sbjct: 876 RKKLEEQLRQAQKMEAVGQLAGGVAHDFNNILTVIMGFGQLLQHSLPAGDPMLESMEQIL 935 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R V+ + + I D ++ + EK+ Sbjct: 936 DAADRATHLTRSLLAFSRKQVMLLHQVELSDLARKHAKFLVRIIGEDVTLKTYFCEEKLM 995 Query: 111 LSRERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLK 152 + + +I L A ++P + + ++ Sbjct: 996 VMADSGQIEQVLMNLATNARDAMPGGGELIIKTEAVQLDKAFHRLHGYGMPGRYALITVT 1055 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G PE +I + + + + V + ++ + S Sbjct: 1056 DTGTGM-DPETQQKIFEPFFTTKLPGRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFS 1114 Query: 211 ALLE 214 L Sbjct: 1115 IYLP 1118 >gi|228997624|ref|ZP_04157234.1| hypothetical protein bmyco0003_21980 [Bacillus mycoides Rock3-17] gi|228762133|gb|EEM11069.1| hypothetical protein bmyco0003_21980 [Bacillus mycoides Rock3-17] Length = 247 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 84/222 (37%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E + + Sbjct: 18 RSKLVKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPDLPQESREQYIEHILGELN 77 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLS 112 + +I ++ A + VD+++ +++++I + + ++ + + Sbjct: 78 RAQVIIDDYLTFAKPASQKVDNIVIDQELKRIISMMMPLCNMNSINVSENLVTGSITGNT 137 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GGK++I +N+ +K +G E+ + + Sbjct: 138 QHFQQCFLNLIKNSIEAMPNGGKLSIKSSACENKITIVIKDSGIGM-TQEQINRFGEPYF 196 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L I + L+ Sbjct: 197 STKKRGTGLGTMVAVKIIETMNGTLDINSIVNKGTTLTITFP 238 >gi|256830398|ref|YP_003159126.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579574|gb|ACU90710.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 566 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 59/238 (24%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE-------- 46 + + + + L A+ L + + H+I +P+ + + +LL Sbjct: 324 LQQMQKHVMDAGKLAAIGELAAGVAHEINNPLAIMMENAGWIQDLLKSDDPHSEENTEEI 383 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQ 101 +Q I + S + + + + + ++ Sbjct: 384 FSSLQTITTQGHRCREITHKLLSFARKADSATKAVNINSLLDDIAGFARQKAKYRNVEIR 443 Query: 102 VSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNL 157 +S E +I+LNL A ++ + ++ ++ NG Sbjct: 444 LSLDPNAGEVDSSPAEIQQIILNLVNNAIDAIEHDDGMVQLRSFREHSFVRIDVEDNGQG 503 Query: 158 ARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + V L Sbjct: 504 IPADILPQIFEPFFTTKDAGKGTGLGLSICRDLLSKMGGSISVDSAPGQGCVFHVRLP 561 >gi|218437801|ref|YP_002376130.1| histidine kinase [Cyanothece sp. PCC 7424] gi|218170529|gb|ACK69262.1| histidine kinase [Cyanothece sp. PCC 7424] Length = 363 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 61/208 (29%), Gaps = 11/208 (5%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L +I H++ +P+ I E L ++ + + + + + Sbjct: 157 LIHKIGHELRNPLSLISLMAENLKLSFPQETGQKQVLSIQETIKDLNQSLTQLIDCGKRS 216 Query: 78 DSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNLFMVAH 127 + L D+ ++ + + + + ++ NL A Sbjct: 217 RLKLELSDLRLIVLKSLKNFQPLLTSKSITLNYPQDKEAIIAVDHLQIQQVFGNLLSNAI 276 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 P GG +T + Q + E I ++ G + I + V Sbjct: 277 YFSPEGGIITCNWQIFQQEIIVTITDQGQGLSSQDLK-HIFTPFYSRRPGGTGLGLTIVQ 335 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + E + + +L + Sbjct: 336 KIIMDHGGSIWAENLPSVGTKFTFILPR 363 >gi|126658342|ref|ZP_01729491.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110] gi|126620274|gb|EAZ90994.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110] Length = 438 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 70/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ + L+ + L S + H++ +P+ + L+ L I+ E ++ Sbjct: 201 LAQTLQTTLTRLSNAWEDQRQLVSNVSHELRTPLTVVSGYLQSTLRRGNNLTDIQREALE 260 Query: 52 LIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + L+ + + ++ L +IE ++ + + Sbjct: 261 TASSEADRTVQLLQDLLDLARAEHGGMYFNLETIFLNELLTEIEGMVYQYPISVNLSLPN 320 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + ++ LNL A + I + +K + + G + Sbjct: 321 ELIKVKGDKNRLKQVFLNLIDNAVKYSHSSEPILIKLTQNKQQAKIEVCDRGVGIPLADQ 380 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V L + + + + LL Sbjct: 381 TRIFERFYRVDEARSRNVGGTGLGLSIVKTLVEGMGGTINVISQPNQGTIFTILLP 436 >gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI] gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 487 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 70/243 (28%), Gaps = 32/243 (13%) Query: 4 NICFNLSSMDLVAL---------LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEV 49 ++ L + AL + + H++ +P+ + E L + + Sbjct: 244 SLSLRLQD-KVAALERLDQTRREFVANVSHELRTPLSIMLGYTEALIDGLAHSDTDRQKY 302 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + I + + + + + +A K V++ Sbjct: 303 LNNIHEEILRLRRLVTELLDLSRMEAGQVNAEMHETDVAAVAGRVFDKFQAVAAKKGVEL 362 Query: 103 SWT-----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + ++ +NL A P GG V ++ + KNE S+ G+ Sbjct: 363 RNSLPSVLHPVLANPDRLEQVFINLLDNAIRVTPAGGVVEMTAYELKNELRVSISDEGHG 422 Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E + + + T + + V + + + + + S Sbjct: 423 IPPEEQPLVWERFYKVDKSRTRTGEGTGLGLAIVKKIVEAHGGSVEIASMPEKGSTFSFT 482 Query: 213 LEK 215 + K Sbjct: 483 IPK 485 >gi|27382035|ref|NP_773564.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27355205|dbj|BAC52189.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 455 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/258 (11%), Positives = 69/258 (26%), Gaps = 44/258 (17%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPI--------------GAIHNSL------- 37 + + + + +L L + + H++ +PI AI L Sbjct: 196 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLIRYRAAIVAYLDAIHGKG 255 Query: 38 ---------------ELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 E++++ + + M+ S + G V+ Sbjct: 256 RASDLAALKKSLRIDEVMEDFGPLIEGTMEGAVRISEIVKNLRRLSFSKLGEVERVNIER 315 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMVAHASLPRG--GKVT 137 + V +Q+ + ++++NL A ++ ++ Sbjct: 316 LINTAVLWAVRTKQVRIDLQMELEPELWISGNEGQLHQVIVNLVENAIDAMRDTELPRLV 375 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIR 196 +S NE +F + NG + + + + E+ Sbjct: 376 VSAARKGNEILFRISDNGPGIDKDHISHIFEPFFTTKRVGEGTGLGLWISYGIVREHGGE 435 Query: 197 LLPEIIDDHNVVLSALLE 214 LL D S L Sbjct: 436 LLAANEPDGGATFSFALP 453 >gi|114567432|ref|YP_754586.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338367|gb|ABI69215.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 878 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 65/221 (29%), Gaps = 13/221 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M K + L+ + V + + I H++ +P+ + L+L+ + + Sbjct: 646 MEKEM-LRLAQLQTVGEMAAGIGHEVRNPMTTVRGFLQLMSQNTELTKYQAYFDTMLEEL 704 Query: 61 II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 K + D + L + +++ + Sbjct: 705 DRANSIISEFLSLAKNKMVNLHNLNLNDIITQLYPLLLADAMVSDKYILLELGEIPNLLL 764 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +E ++++NL ++ G + IS + E I S+K G + ++ Sbjct: 765 DDKEMRQLIINLVRNGLEAMEGGQSLEISTRLEAEEVILSIKDQGKGIDKSY-WGKLGTP 823 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + +A + + + + Sbjct: 824 FFTTKDKGTGLGLAICYSIARRHNASIRVDSS-NRGTTFEV 863 >gi|47567925|ref|ZP_00238632.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|229157216|ref|ZP_04285296.1| hypothetical protein bcere0010_34000 [Bacillus cereus ATCC 4342] gi|47555403|gb|EAL13747.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|228626280|gb|EEK83027.1| hypothetical protein bcere0010_34000 [Bacillus cereus ATCC 4342] Length = 510 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIHTCNMQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] Length = 2370 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 18/217 (8%), Positives = 56/217 (25%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ I +L+ ++ + + + Sbjct: 2003 AVLSHELRTPLNPILGWTKLMRSRKLDQATSDRALETIERNAKLQTQLIEDLLDVSRILQ 2062 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----------------AKILLNLF 123 + + + V + + + + +++ N+ Sbjct: 2063 GKLNLNFGPINLVSVIEAAIETVRLSAQAKSIEIQTIFEFGVGSVLGDANRLQQVIWNIL 2122 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178 A P G+V I ++ ++ + G + + DG Sbjct: 2123 SNAIKFTPSEGQVKIKLEQVGSQVQICVTDTGKGIAPEFLPYVFDYFRQADGATTRQFGG 2182 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V L + + E ++ + L Sbjct: 2183 LGLGLAIVRHLVELHGGTVQAESLGEEQGATFTVRLP 2219 >gi|330967202|gb|EGH67462.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 984 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + + V + + Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEASEHTVDLIVEDEGSGI-SKAIMDRLFE 923 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 924 PFFTTKDPGEGTGLGLALVYYIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975 >gi|315178838|gb|ADT85752.1| osmolarity sensor protein EnvZ [Vibrio furnissii NCTC 11218] Length = 435 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ +E + + ++ + + Sbjct: 221 IQALEADRALLMAGISHDLRTPLTRIRLATEMMSPEESYLAEGIISDTEECNEIISQFMD 280 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFM 124 +++ + L + + E V V + + + NL + Sbjct: 281 YLKPVNKQSFEQVDLNEIANDVATSEGGYEVQVDVSLHPEFVPAFGNPIAIKRAVSNLVV 340 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K ++ NG + F G+ + + Sbjct: 341 NALRYGNGWVKVSTGLTVDKKMAWVCVEDNGPGIEPSQVNKLFEPFTRGDTARGSEGTGL 400 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + + Sbjct: 401 GLAIVKRIISQHHGSVAVNNRSEGGLKAQISFP 433 >gi|260770796|ref|ZP_05879725.1| osmolarity sensory histidine kinase EnvZ [Vibrio furnissii CIP 102972] gi|260614033|gb|EEX39223.1| osmolarity sensory histidine kinase EnvZ [Vibrio furnissii CIP 102972] Length = 435 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ +E + + ++ + + Sbjct: 221 IQALEADRALLMAGISHDLRTPLTRIRLATEMMSPEESYLAEGIISDTEECNEIISQFMD 280 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFM 124 +++ + L + + E V V + + + NL + Sbjct: 281 YLKPVNKQSFEQVDLNEIANDVATSEGGYEVQVDVSLHPEFVPAFGNPIAIKRAVSNLVV 340 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K ++ NG + F G+ + + Sbjct: 341 NALRYGNGWVKVSTGLTVDKKMAWVCVEDNGPGIEPSQVNKLFEPFTRGDTARGSEGTGL 400 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + + Sbjct: 401 GLAIVKRIISQHHGSVAVNNRSEGGLKAQISFP 433 >gi|206968327|ref|ZP_03229283.1| sporulation kinase B [Bacillus cereus AH1134] gi|228951820|ref|ZP_04113918.1| hypothetical protein bthur0006_12340 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229078624|ref|ZP_04211181.1| hypothetical protein bcere0023_12890 [Bacillus cereus Rock4-2] gi|206737247|gb|EDZ54394.1| sporulation kinase B [Bacillus cereus AH1134] gi|228704694|gb|EEL57123.1| hypothetical protein bcere0023_12890 [Bacillus cereus Rock4-2] gi|228807743|gb|EEM54264.1| hypothetical protein bthur0006_12340 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 402 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLTNLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 468 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +P+ I E L E ++LI + ++ + Sbjct: 246 ANVSHELRTPLSYIKGYSEALLSGLARTKEEEQSHLRLIHRETERMERLVRDLLDLAQLE 305 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + D+ + I + + + + +++ NL Sbjct: 306 GQSVPLERAPVAFAQVIEDVMDMYRPIITQKRLTLTCDLDYELIVDGDADRLEQVVRNLL 365 Query: 124 MVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTID 177 A P GG VT+ + S E ++ G + + Sbjct: 366 DNAIRYTPEGGAVTVRLSRFSDTEGELVIRDTGKGIPKDQLPLLGQRFFRVDRARTRKEG 425 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + +S L Sbjct: 426 GTGLGLAIVKQIVALHGGAIQFDSDLGQGTTVSVRLP 462 >gi|160880259|ref|YP_001559227.1| integral membrane sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] gi|160428925|gb|ABX42488.1| integral membrane sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] Length = 464 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 74/230 (32%), Gaps = 18/230 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 N+ +L + + L S + H++ +P+ I +E + E E ++ Sbjct: 234 NLASSLEKQEGIRKQLTSDVSHELRTPLTTIGTHIEAMIEGVWEPTTERLKSCYEEINRI 293 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +K + + ++ +I E + + + Sbjct: 294 TNLVKDLEQLAKVENDNLKLNITSVNILEVIDTIKDNFETEIYNKSLDVSVIGTASTILV 353 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 +++++NL A P GK+ IS++D + + +K NG E F + Sbjct: 354 DKERISQVIINLLSNAIKYTPDFGKIVISLEDYETNLVIQMKDNGIGIPEEELPFIFERF 413 Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I V + H + ++ + V +L + Sbjct: 414 YRADKSRNRRTGGAGIGLAIVKSVVHSHGGKVEVSSKLETGTVFRVILPR 463 >gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 58/254 (22%), Gaps = 40/254 (15%) Query: 1 MAKNICF---NLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47 M N + + +L + + + H+I +P+ + LL + D Sbjct: 139 MESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDLSD 198 Query: 48 EVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIE 91 E ++ S + + + + Q Sbjct: 199 EQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDHRPFSPRELVEEVAVLLRPQAAA 258 Query: 92 DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKN 145 IA+ V ++LLNL A GG Sbjct: 259 QNIALTSEVSPDIPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHC 318 Query: 146 ENIFSLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPE 200 F++K +G + F + + + L + E Sbjct: 319 SLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLVELMGGEIGVE 378 Query: 201 IIDDHNVVLSALLE 214 + + Sbjct: 379 SEEGKGSTFWFTVP 392 >gi|86160727|ref|YP_467512.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777238|gb|ABC84075.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 591 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 + + L A+ L + + H++ +P+ A+ ++L E + E ++ Sbjct: 324 LRSMQAAAEHAERLAAIGRLVAGVVHELNNPLTAVTMYSDVLLERFTARGQDPADVEKLR 383 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 I+ + + + TG+ + L R Sbjct: 384 AIKDAGQRIQRLARDLVTYARPTGARTEAVDLVPAVDEAGRMAKPALKEAGAALVRDGGD 443 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++L L A ++P GG+V + + + E + ++ G PE Sbjct: 444 GPYVVEGNRPSLVQVVLALVTNAAQAVPPGGEVRVGLAREEGEVVLTVADEGAGM-PPEV 502 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + + ++ L Sbjct: 503 AARAFEPFFTTRAGVGIGLGLPIVQGIVERHGGSVSLTTAAGRGTTVTVRLP 554 >gi|73662383|ref|YP_301164.1| alkaline phosphatase synthesis sensor protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494898|dbj|BAE18219.1| alkaline phosphatase synthesis sensor protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 562 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 63/221 (28%), Gaps = 20/221 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKF 66 +L + + H++ +PI +I E L + +E +++I S + Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLLDGAKNDEQTLNEFLKIISKESDRIETLVFD 398 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERA 116 + + + + ++ E I + + ++ + + Sbjct: 399 LLDLSHVEQQTEIVTEYVSLSEIAESTIKNMQNIAEEKQITIVNEIKPDIVIDANKDKVS 458 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN-- 171 ++ LNL A + +V + V N+ I ++ G F + + Sbjct: 459 QVALNLLSNAVSYSKASSEVIVRVYKDANKRIMEVQDFGIGISAEDQQHIFERFYRVDKA 518 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + R+ + Sbjct: 519 RSRDSGGTGLGLSITKHIMEAHNGRINVFSRPNEGSTFRVT 559 >gi|115378758|ref|ZP_01465903.1| SdeK [Stigmatella aurantiaca DW4/3-1] gi|115364242|gb|EAU63332.1| SdeK [Stigmatella aurantiaca DW4/3-1] Length = 828 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 20/234 (8%) Query: 2 AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLS 56 K L + + + HD+ +P+ AI S +L + I S Sbjct: 581 RKQQEERLRQTAEFRERFMGVVSHDLRNPLNAILLSANVLLRTDGVHANHAKVARRIVAS 640 Query: 57 SMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106 + + + + + + + + R+ Sbjct: 641 GERMVRMIGELLDFTRGRLGGGIPVHLHPCHLRQLCRHVLEELEISHPGRELRLNAQGHF 700 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP----- 161 + A++L NL A P G V ++ D + + G Sbjct: 701 PGMWDPDRLAQLLDNLGKNALDYSPAGTPVDFTLLDCGDTLRIEVHNEGPPIPPALMPVI 760 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V +A + + + + L + Sbjct: 761 FEPFRRAVAGDAHPTSGLGLGLFIVQQIAQAHGGTVSVNSQEGQGTTFTVQLPR 814 >gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] Length = 1390 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMS 59 + L+ +DL S I H+ +P+ I E+L ++ V + + L+ + Sbjct: 338 QQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSELDVRVREELELAHRN 397 Query: 60 AIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107 + VD ++ V I Sbjct: 398 GLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAGLEFTVDCPPL 457 Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 K++LNL A G D ++ G E Sbjct: 458 AEPVFVDRDMWEKVVLNLLSNALKFTREGAVTVRVTADDGVAV-VTVADTGVGIPEAE-M 515 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + I V L + + + + + + Sbjct: 516 PRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGRGTTFTIQMP 571 >gi|308272282|emb|CBX28888.1| hypothetical protein N47_B20340 [uncultured Desulfobacterium sp.] Length = 478 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + K + + L ++ L S I H + +P+ I S ++L + ++ Sbjct: 242 LEKRQEQLVQTKKLSSIGILTSGIAHQLNNPLNNISTSCQILLEEGSKADPEFMHRMLSN 301 Query: 53 IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 I A L+F R + +++ + +Q + + Sbjct: 302 IEQEVNRARDTVKGLLEFSRDRDFALVPASLDEVVERSIRLVSSQVPSGIEIQKNIPKDL 361 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL---KINGNLARFPEK 163 + ++ LNL + A ++ + ++ + G E Sbjct: 362 VLDIDKQRIQEVFLNLMINAVQAIESSSGIIKISAKPDRAASMAVITFEDTGGGI-PEEN 420 Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F I D + + V + ++K + E L Sbjct: 421 FDMIFDPFFTTKEVGVGTGLGLSIVYGILQQHKGSISVESKLGEGTRFIINLP 473 >gi|298249886|ref|ZP_06973690.1| response regulator receiver sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547890|gb|EFH81757.1| response regulator receiver sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 30/239 (12%) Query: 5 ICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 L S + A S + H++ +P+ +I +LL + E Q ++L Sbjct: 134 EREKLISEQMAAQELEKRKNEFMSMVVHEVKTPLTSIKGYAQLLSKRYKRSEDDQALQLV 193 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------- 108 + K L G+ I + F + K + Sbjct: 194 NRMNAQVSKLTSLLDDLLDVTRISGGMLSISEEFFPFDELVKEIVEDLQAVNEQFTLEVE 253 Query: 109 -------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +++ N A ++ + + S + ++ G Sbjct: 254 GESNATIWGDRMRLGQVITNFLTNAMKYASNSTRIVVKIFLSDQDVTLCVQDFGPGI-AK 312 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + +I + + + +++ R+ E + L Sbjct: 313 DVQEKIFTPFFRQEHPEQRSIPGLGLGLHIASEIIRQHEGRIWVESEEGQGATFCFSLP 371 >gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 432 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 491 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 492 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 551 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + S++ G Sbjct: 552 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSISVRDTGVGIPA 610 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 611 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 669 >gi|119717079|ref|YP_924044.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] gi|119537740|gb|ABL82357.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] Length = 712 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + + ++ + + + H++ +P+ ++ LELL E + + Sbjct: 475 QEVTDLMRAIQVKDEFVASVSHELRTPLTSVLGHLELLGERDDLTDEVAAQLRVVQRNAA 534 Query: 63 RLKF---------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 RL+ + L G + + + + D V RV+ T Sbjct: 535 RLQALLSDLLLIGQIADGTLELNSGPVDLRTVVDEAVEAVRAVADQSDVSIRVEAPGTLP 594 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L NL A G VT+ ++ + + + G ++ Sbjct: 595 AVADGQRLRQVLDNLLSNAIKYGRAGCSVTVELRRADDGVELLVADTGMGIADHDREHVF 654 Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E L Sbjct: 655 GRFFRGGEAVRQHLPGTGLGLSIVASIVAAHGGTVTVESELGRGSTFRVALP 706 >gi|309388596|gb|ADO76476.1| multi-sensor signal transduction histidine kinase [Halanaerobium praevalens DSM 2228] Length = 593 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 20/223 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLK 65 L + + H++ SP+ +I S E+L + IE+E Q +++ S+ A + + Sbjct: 367 EKLQREFVANVSHELKSPLTSIKGSAEILLDGIIENEAQQKEYLKMILKESNSLAHLIDE 426 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RA 116 + LA +G V+ ++ + +D ++ + + + Sbjct: 427 TLTLAEIDSGGVELNKEKIKVKTLFQDLEIFFDNIKKEEQSLEFEFEADLELYANREKIR 486 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 ++L+NL + + GK+ + + S+ NG E + + + Sbjct: 487 QVLINLLTNSVKYSAKKGKIKLKALQMAEKIKISVSDNGIGIPKAEQKNIWERFYKIDKA 546 Query: 174 STID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + V + E++ +L + S +L Sbjct: 547 RTPGERSSGLGLAIVKQIIQEHQGKLALKSQVGEGSTFSFILP 589 >gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220] gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220] Length = 928 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + + V +L+ Sbjct: 432 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPNGVDRLVTAM 491 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + ++ + Sbjct: 492 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFI 551 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +++ NL A G + + VQ + ++ G Sbjct: 552 DPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCDGDYLSIRVRDTGVGIPA 610 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 611 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 669 >gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 435 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 19/264 (7%), Positives = 57/264 (21%), Gaps = 50/264 (18%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIE------- 46 + ++ + + D+ + + + H++ +P+ AI +LL+ + Sbjct: 162 LEDSLRELIQARDVAEKASQAKSQFLAMMSHELRTPLNAIIGYSQLLEMEAQDQDLNEFI 221 Query: 47 -------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 L+ + S + + + ++ + + Sbjct: 222 PDLQQISHAGQDLLEIFSNILEMCQIEAGKHRFNVYEFEVKALIDEVIAQNQPLADKNNN 281 Query: 100 ----VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG--------------------K 135 V+ G + +L L + G Sbjct: 282 TLTVHFVNDPGSVCADRIWMRQCVLQLLSNSCKFTHNGTITVSLERHNRSQLQSKSSVYN 341 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLA 190 S ++ + G + + L+ Sbjct: 342 QVNSTDCLEDVILVKCNDTGIGIKAEYVSQIFEPFFQVDGSTTRKYGGVGLGLAIAKSLS 401 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + E + + L Sbjct: 402 QLMGGDISVESVFGQGSTFTLWLP 425 >gi|99080803|ref|YP_612957.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99037083|gb|ABF63695.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 823 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ L + + H++ +P+ I SL++L+ + E + ++ +S Sbjct: 335 LRRARDDALAGEQAKDRLLTVMSHEMRTPLTGILGSLDVLEGLTPSAEQQRYLQAMRVSG 394 Query: 61 IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--- 110 + L + + L ++ + I + + + Sbjct: 395 ELLLHHVNDVLQLSRLESGAEADAPIRFDLDELVRGIGESQQANAARNNNDLSVFCSLGA 454 Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R ++LLNL A G ++ + FS+ G + Sbjct: 455 ETGVEGHCRYVQQVLLNLIGNALKFTQDGAVSVDVMRTEGDLVEFSVADTGKGIAAEDLE 514 Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D N + + LA + E + S + Sbjct: 515 RIFDEFTMVDPNYNRGCEGTGLGLAISRRLARLMGGEITCESEPGEGSLFSFTIP 569 >gi|27364305|ref|NP_759833.1| osmolarity sensor protein [Vibrio vulnificus CMCP6] gi|27360423|gb|AAO09360.1| Osmolarity sensory histidine kinase EnvZ [Vibrio vulnificus CMCP6] Length = 432 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + ++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 216 IQELEADRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 275 Query: 66 FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ + VD GD+ + + + + NL + Sbjct: 276 YLKPVNTQSFTEVDINGISGDVASSEGGYEVQIETAFQPSIRTAFGSPIAIKRAVSNLVV 335 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A K++ + ++ NG + F G+ + + Sbjct: 336 NALRYGNGWVKISTGMTADSKLVWVCVEDNGPGIEKSQVAKLFEPFTRGDTARGSEGTGL 395 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + + Sbjct: 396 GLAIVKRIVSQHHGSVVVNNRSEGGLKVQLSFP 428 >gi|37678421|ref|NP_933030.1| osmolarity sensor protein [Vibrio vulnificus YJ016] gi|320157696|ref|YP_004190075.1| osmolarity sensory histidine kinase EnvZ [Vibrio vulnificus MO6-24/O] gi|37197160|dbj|BAC93001.1| osmolarity sensor protein EnvZ [Vibrio vulnificus YJ016] gi|319933008|gb|ADV87872.1| osmolarity sensory histidine kinase EnvZ [Vibrio vulnificus MO6-24/O] Length = 432 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + ++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 216 IQELEADRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 275 Query: 66 FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ + VD GD+ + + + + NL + Sbjct: 276 YLKPVNTQSFTEVDINGISGDVASSEGGYEVQIETAFQPSIRTAFGSPIAIKRAVSNLVV 335 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A K++ + ++ NG + F G+ + + Sbjct: 336 NALRYGNGWVKISTGMTADSKLVWVCVEDNGPGIEKSQVAKLFEPFTRGDTARGSEGTGL 395 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + + Sbjct: 396 GLAIVKRIVSQHHGSVVVNNRSEGGLKVQLSFP 428 >gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 883 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 25/228 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRL 64 + L L + H++ +P+ +I +++L + E +++I+ + + ++ + Sbjct: 651 ADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVSATQREPLRVIKNNVVRLVVLI 710 Query: 65 KFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLS 112 + + + I + F + + V + + Sbjct: 711 DELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFREREIELHVDFQEGLPHVVADR 770 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +I +NL A PRGG V I + + E ++ G E + I Sbjct: 771 QRIEQIAVNLIGNACKYTPRGGTVWIGMHNGNGELRVDVRDTGVGI-SEEAKSHIFTPFY 829 Query: 173 E------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + R+ E + S +L Sbjct: 830 RADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGSTFSFVLP 877 >gi|299529485|ref|ZP_07042922.1| osmosensitive K+ channel signal transduction [Comamonas testosteroni S44] gi|298722348|gb|EFI63268.1| osmosensitive K+ channel signal transduction [Comamonas testosteroni S44] Length = 897 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + L S + HD+ +P+ I + + + ++ A Sbjct: 658 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTGILGAAQAALPHAPQGPAHHMLVQIRNQAQ 717 Query: 62 IRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + L +Q S + L Sbjct: 718 ALQQLVDNLLAMARLQQGGVQLKREWLPVDELVGSALAQMRERLAAHALQTSLPADLPLL 777 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL A P G +T++ + + + S++ G Q+ Sbjct: 778 QLDAVLMERVLVNLLDNAIKYTPEGTTITVAASVADGDCVLSVQDAGPGLPGHLSPEQLF 837 Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + + + RL V S L Sbjct: 838 EPFTRGQAESAVFGMGLGLALAQRIVQAHGGRLRVAAADPGPGTVFSISLP 888 >gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 781 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 59/240 (24%), Gaps = 29/240 (12%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + + H+I +P+ + +E+L + + D + + S Sbjct: 253 TRRMIERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDTPLNDSQKHYLDVIFRSG 312 Query: 61 IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 L+ + Y+ D L D Q+ + Sbjct: 313 ESLLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPET 372 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159 + +I++NL A G + FS+ +G Sbjct: 373 PTQLRGDPTRLRQIVVNLIGNAFKFTSNGHVMVLVKSLQDRTSEHPLLRFSIVDSGIGI- 431 Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E + + LA + E + Sbjct: 432 SKEIQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVESEYGKGSTFWFTI 491 >gi|229162473|ref|ZP_04290434.1| hypothetical protein bcere0009_32450 [Bacillus cereus R309803] gi|228620952|gb|EEK77817.1| hypothetical protein bcere0009_32450 [Bacillus cereus R309803] Length = 516 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 71/227 (31%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ I + + K D+ Sbjct: 341 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFKHKHDI 400 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ A ++P GG + I ++ N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINVLKNAIEAMPNGGNIFIQIKPLDDNFIVIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|169830722|ref|YP_001716704.1| nitrogen-specific signal transduction histidine kinase NtrB [Candidatus Desulforudis audaxviator MP104C] gi|169637566|gb|ACA59072.1| signal transduction histidine kinase, nitrogen specific, NtrB [Candidatus Desulforudis audaxviator MP104C] Length = 579 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 12/217 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRL 64 L ++L+ + + I H+I +P+ A+ L++ E + + L+ A + Sbjct: 354 RLDRLNLIGEMAAGIVHEIRNPLTAVRGFLQMFRERKEWSDYTKHLDLMTAELDRAGAIV 413 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSRERAK 117 L I + I + ++ + + E + Sbjct: 414 TGFLSLAKNRPLNQKPHNLNAIISSLLPLIQADALTGDKYVQANLNEVPDLLLDENEIRQ 473 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 ++LNL ++ G++T++ E + +++ G +I V + Sbjct: 474 LILNLARNGLEAMSASGRLTLNTFMDGGEVVLAVQDQGPGIEPG-LVDKITRPFVTNKEQ 532 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ + E Sbjct: 533 GTGLGLAVCDSIAAQHNATMTFETSP-AGTTFYVRFP 568 >gi|149280459|ref|ZP_01886578.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] gi|149228771|gb|EDM34171.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] Length = 769 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 56/210 (26%), Gaps = 18/210 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVM----------QLIRLSSMSAIIRLKFMRLAFG 72 H++ +P+ ++ SL+LL+ + + + + + S L R+ G Sbjct: 557 SHELKTPLTSLKASLQLLERMKDQPNPLSFPRLITQAAKSMDKISELVDDLLNVSRINEG 616 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + D+ +Q + + ++L+NL A Sbjct: 617 QMLIRKDWFDIDDLLHSCCATFRENSGKQFPIQTTAGLKVFADEHRIEQVLVNLISNAIK 676 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----SHDIQFY 184 P + + + ++ NG + + + Y Sbjct: 677 YAPESAVINLIAVQISSSVKVEVRDNGPGISQEKIPHLFDRYYRGDSSGIQVSGLGLGLY 736 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + L Sbjct: 737 ISADIVRRHGGEIGVESRLNEGSTFWFTLP 766 >gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] Length = 1338 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 59/239 (24%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + L + S + H++ +P+ I E + + Sbjct: 808 QQKEEIASQAEKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQILHSAESTTTQSHSKS 867 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRV 100 +A LK + ++ V + E + K + Sbjct: 868 ILSNAQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLANQKNIGLKLL 927 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + K+ NL A P G VTI V+ + + G Sbjct: 928 LHQEEIMGEFDHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEEMVQIKVSDTGIGIPP 987 Query: 161 ---PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + G+ T + I V L + + D L Sbjct: 988 QSLPFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDKGTTFFIQLP 1046 >gi|51245738|ref|YP_065622.1| Pho family two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50876775|emb|CAG36615.1| related to two-component system sensor histidine kinase (Pho family) [Desulfotalea psychrophila LSv54] Length = 602 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +PI AI +E L + ++ + ++ S + + Sbjct: 377 FVANVSHELRTPITAIRGYVETLLDGALDQKEDARRFLAIVLRQSSRLSDIINDLLALSR 436 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KIL 119 + + + + A + Q+ + I L + L Sbjct: 437 IELDSSTDNIELEEQHICSVVRAALQTCQIDAEQKGIILQLHCPEDIRVPLNPHLIEQAL 496 Query: 120 LNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--V 172 +NL + A P ++ + V + E S+ +G P F + + Sbjct: 497 VNLIVNAVRYSPEKSEIRVEVLACEEGQEVSISVADDGCGIGAEHLPRVFERFYRSDKAR 556 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + S L Sbjct: 557 SRELGGTGLGLAIVKHIVQAHNGRVAVNSEEGVGTEFSFFLP 598 >gi|254426378|ref|ZP_05040094.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196187792|gb|EDX82758.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 515 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLS 56 A L + L I H++ +PI I LE+L + E + L+ Sbjct: 237 ATTFNAMLDRLQLAFNVQQEFLKDISHELRTPITVIQGQLEMLPYRPEKQPETIALVTSE 296 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEK 108 + + L ++ D++ + E+ + +++ Sbjct: 297 LAQMDRLVNDLTLLTKAERPDFLILKPEDLDWLTEELYLKARTLSDERNWQLETKGLYPA 356 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ ++NL A G + + + F + G ++ +I Sbjct: 357 TIDKQRFSQAVMNLVQNAVRHTQPGDTIALGSLATDGYLQFWVSDTGEGVATADQS-RIF 415 Query: 169 DGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + ++ Sbjct: 416 KRFARATNNNRQFEGAGLGLSIVSAIVQAHGGRIELTSKLGQGSTFTLIVP 466 >gi|182625795|ref|ZP_02953562.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721] gi|177908951|gb|EDT71438.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721] Length = 473 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + + E +L+ + + Sbjct: 248 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 307 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A + +++ + + I+L ++ + Sbjct: 308 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSRNIKIEYEKKNINLYCDKDKITQ 367 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 368 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 427 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 428 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 470 >gi|168216704|ref|ZP_02642329.1| sensor histidine kinase [Clostridium perfringens NCTC 8239] gi|182381212|gb|EDT78691.1| sensor histidine kinase [Clostridium perfringens NCTC 8239] Length = 467 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + + E +L+ + + Sbjct: 242 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 301 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A K +++ + + I+L ++ + Sbjct: 302 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 361 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 362 ALVNILSNAIRYSNEGSTIFIEERLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 421 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 422 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 464 >gi|206969280|ref|ZP_03230235.1| sporulation kinase A [Bacillus cereus AH1134] gi|206736321|gb|EDZ53479.1| sporulation kinase A [Bacillus cereus AH1134] Length = 510 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNEGTIVDIELP 500 >gi|162453632|ref|YP_001615999.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164214|emb|CAN95519.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 692 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 26/234 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLI 53 A+ L L + HD+ +P+ +I + LL+ + Q+ Sbjct: 461 AEQRARRLREEALA--IA---AHDLRNPLSSIILAASLLERSAPADAGGQPIRNRARQIK 515 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT 105 R + + + + + A + I + E + ++ Sbjct: 516 RAAERAVEMLGELLDAAIIEAKGLKLDIQPCEVGSLVREVTEMLAPLAEQKRIQLHTLLP 575 Query: 106 GEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 G ++L NL A G ++TI + S+ G R + Sbjct: 576 GSGLELSCDRGRMLQVLSNLVGNALKFTAEGREITIGAERQGPHVRLSVSDTGTGIRPED 635 Query: 163 KFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y V + + ++ + S + Sbjct: 636 IPRLFDRYWQGRAARCAGAGLGLYIVKGIVEAHGGQISVDSELGAGTTFSCTIP 689 >gi|315919855|ref|ZP_07916095.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693730|gb|EFS30565.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 632 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + + L + + + H+I +P+ AI +L + E LI ++ Sbjct: 399 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYADLIETNT 458 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + Y +D L +IEQ ++ + + Sbjct: 459 DLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTCTFVERLPE 518 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N + A G F + G E+ Sbjct: 519 CTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCGM-SSEQCI 577 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + ++ E ++ L Sbjct: 578 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628 >gi|260171541|ref|ZP_05757953.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 654 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + + L + + + H+I +P+ AI +L + E LI ++ Sbjct: 421 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYADLIETNT 480 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105 + + Y +D L +IEQ ++ + + Sbjct: 481 DLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTCTFVERLPE 540 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N + A G F + G E+ Sbjct: 541 CTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCGM-SSEQCI 599 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + ++ E ++ L Sbjct: 600 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650 >gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 792 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ + + + + H+I +P+ + ++L++ + ++++L S Sbjct: 409 LTNTARDANAANEAKSAFLATMSHEIRTPMNGVLGLTQILEKEITDPNHREVLQLILSSG 468 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105 + + + + + L + + ++ K S Sbjct: 469 NHLVSILNDILDISKIENEALTLEHSPFKMIEILSPVKNTYQSLCSEKGLLFEVIDNTPP 528 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + I +ILLNL A +G V + F +K G Sbjct: 529 YTQFIGDEVRLRQILLNLVGNALKFTQKGSIVISVEVNVGGMCRFEVKDTGIGITPDRLD 588 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L +L + + LL Sbjct: 589 SVFEKFEQAEASTTRQFGGTGLGLSIVKSLVELMGGEILVDSKVGRGSTFTVLLP 643 >gi|302392132|ref|YP_003827952.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302204209|gb|ADL12887.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 617 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 18/222 (8%), Positives = 62/222 (27%), Gaps = 21/222 (9%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFM 67 + + S + H+ +P+ +++ + +L + + E++++ + + + Sbjct: 393 MKSEFVSMVSHEFRTPLTSMNMGINMLLEENIGEINEEQKELLEVAKEDCEHLNNLVDDL 452 Query: 68 RL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 +V Q ++ +++ + KI Sbjct: 453 LDLSKIESGEIDLEFDAVAVKKIFEASIQPFMTQAEEQGVDLITEETNGLEVYADFNKIT 512 Query: 120 LNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----GNV 172 + A +G K+ + ++ S+ G + G+ Sbjct: 513 WVITNLIGNALRYTGKGDKIKLLADKKGHKMHISVADTGEGIPKEYRHKIFKKFVRVGDD 572 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E + + L+ Sbjct: 573 KDEETGTGLGLAISKEIIEAHGGRIWVESEVGEGSIFTFTLK 614 >gi|288556614|ref|YP_003428549.1| signal transduction histidine kinase [Bacillus pseudofirmus OF4] gi|288547774|gb|ADC51657.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus pseudofirmus OF4] Length = 580 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 63/222 (28%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + +++ L + I H+I +P+ AI +L ++ ++I Sbjct: 349 EKEMIRSEKLNIAGQLAAGIAHEIKNPLTAIKGFYKLFKLNMGKEFYYKIIDDELNRIEQ 408 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTGEKIDLSR 113 +V + + I Q ++ + +Q S Sbjct: 409 IANEFLALSKPHSNVFEVHSISKIIQEVKTLLETEAILKGNEIITSLQKSDELFIYCEET 468 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ +NL A + G + I+ + S++ G ++ + Sbjct: 469 KMKQVFVNLIKNAIEATTN-GHIFITTKLRGENVEISIQDQGCGISETTLK-KVGEPFFT 526 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E + ++ + Sbjct: 527 TKETGTGLGLLICDKIIDTHNGTRSIESQEGVGTKVTIRFPR 568 >gi|228957711|ref|ZP_04119455.1| hypothetical protein bthur0005_12270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229144043|ref|ZP_04272459.1| hypothetical protein bcere0012_12060 [Bacillus cereus BDRD-ST24] gi|296502020|ref|YP_003663720.1| sporulation kinase [Bacillus thuringiensis BMB171] gi|228639440|gb|EEK95854.1| hypothetical protein bcere0012_12060 [Bacillus cereus BDRD-ST24] gi|228801954|gb|EEM48827.1| hypothetical protein bthur0005_12270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323072|gb|ADH06000.1| sporulation kinase [Bacillus thuringiensis BMB171] Length = 402 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKID 110 + + ++ A L ++ + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQILQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|149919622|ref|ZP_01908101.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149819565|gb|EDM78993.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 1928 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 29/233 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK 65 ++ + L S + H+I +PI I N ELL + DE + I S ++ Sbjct: 1683 QRLESIGTLASGVAHEINNPIQGIRNYAELLRGESCDEATVDEFAREIIHESERVTTFVR 1742 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------GEKIDLSR 113 + GS + + + D ++ + + + + Sbjct: 1743 GLLTFARREGSEQAPALERVAPRELVDASSLLVKTILRRDGVELRTRFAPALPQVPCRPQ 1802 Query: 114 ERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L+NL A + + +V ++ F ++ G + Sbjct: 1803 QIQQVLMNLVTNARDALVEAELPRERMTLELEVDACEREGATWVRFQVRDRGPGIPESAR 1862 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ D + + +A E+ RL E + L Sbjct: 1863 -AQLFDPFFTTKARDKGTGLGLAISHGIATEHGGRLSFETELGVGTCFTLELP 1914 >gi|118478878|ref|YP_896029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|229185874|ref|ZP_04313047.1| hypothetical protein bcere0004_34220 [Bacillus cereus BGSC 6E1] gi|118418103|gb|ABK86522.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|228597586|gb|EEK55233.1| hypothetical protein bcere0004_34220 [Bacillus cereus BGSC 6E1] Length = 516 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEIDEEHKWYIDVMLSE 340 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 341 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|167647511|ref|YP_001685174.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349941|gb|ABZ72676.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 702 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 73/233 (31%), Gaps = 21/233 (9%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +++ L + + A+ L + HD + + I ++EL+ ++ + + Sbjct: 296 RRDLEEALVQARKMEAVGQLTGGVAHDFNNLLTVILGNIELIQRRSGDEHPLARHVAAVR 355 Query: 59 S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R +VD + + + ++ + + + + Sbjct: 356 QAAERGGALTRQLLAFSRRQRLDPATVDIIDLVREFTPLLRQAVGEAVTIDLEIGATPVW 415 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEK 163 + + A++ L A ++ GG ++IS + + + S++ G E Sbjct: 416 VHVDAAQLESALLNLAVNARDAMDAGGVLSISARVEASAGAALAVISVRDTGPGM-SEEI 474 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + + + V ++ + L Sbjct: 475 ASRVFEPFFTTKEVGKGSGLGLSQVYGFVRQSGGEITLRSAPGQGATFEIRLP 527 >gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] Length = 1277 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 24/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60 + M S + H++ +P+ AI SL L+ + + Q++ ++ ++ Sbjct: 1041 TERKRIEQMK--NEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQTMRQMLAIAHSNS 1098 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--------------FIAVDKRVQVSWTG 106 + + V + ++++ V+ R+QV Sbjct: 1099 LRLSALINDLLDMEKLVAGKMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQVEDDA 1158 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ A+++ NL A P GG V + +Q S+ NG K Sbjct: 1159 LVNVDTQRLAQVMANLLSNAAKFSPPGGNVVVCLQTLGEALRVSVSDNGPGIPEAFKPRI 1218 Query: 167 IVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + L Sbjct: 1219 FSKFSQADSGDTRQQGGTGLGLAICKEIIERMGGQIGFDSSPGQGATFWFELP 1271 >gi|315920397|ref|ZP_07916637.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694272|gb|EFS31107.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1308 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 774 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 831 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 832 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 891 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R +I + A GG + + + D E +FS+ NG + Sbjct: 892 CLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVK 951 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 952 IFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1004 >gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 589 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L + + D + +I S ++ + Sbjct: 364 FVANVSHELKTPITSIKGFSETLLDGAMNDKDTLEYFLSIILKESDRLQSLIEDLLDLSK 423 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERAKILL 120 + F + L + VI + A +K + + + K +L ++ + Sbjct: 424 IEKQGFRLNPQYLEINELLEEIFVILEGKAREKEIDLVLSKPKKELYLFADASRIKQVFI 483 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A A P GG+V + V++ E + + G E +I + Sbjct: 484 NLINNAIAYTPAGGEVKVKVEEVDKEVVIVVSDTGIGMEQDEIP-RIFERFYRVDKARSR 542 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + + L K Sbjct: 543 NSGGTGLGLAIVKHIVEAHHGSISVTSELNKGTAFTVKLSK 583 >gi|302342593|ref|YP_003807122.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639206|gb|ADK84528.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1211 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/244 (9%), Positives = 63/244 (25%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50 K + L + + A+ L I HD + + AI + EL + + ++++ Sbjct: 826 TKRLEAQLRQAQKMEAIGTLAGGIAHDFNNILTAISGNAELALDRARQGAATPAELEKIL 885 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + F R + ++ + D +IE I V++ Sbjct: 886 GAADRARRLIKKIMFFSRKVEFHPQPLNLNKVVTDAVSIIERAIPKMISVELRLEPTPWT 945 Query: 111 LSRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 + + ++ + A ++ + + + ++ Sbjct: 946 IKGDATQLEQIILNLASNAQDAMQNGGRLIIETANVCLDEKDAASHFHMAAGDYLRLTVS 1005 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G I + + + V + + V Sbjct: 1006 DTGVGI-DKHILEHIFEPFYTTKEIGKGTGMGLASVYGAVQNHGGHIYCYSEPGQGTVFK 1064 Query: 211 ALLE 214 L Sbjct: 1065 CYLP 1068 >gi|262401994|ref|ZP_06078559.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC586] gi|262351966|gb|EEZ01097.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC586] Length = 438 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124 +++ L + E V + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQADLTPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K ++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|260172086|ref|ZP_05758498.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1341 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R +I + A GG + + + D E +FS+ NG + Sbjct: 925 CLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|297568853|ref|YP_003690197.1| GAF sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924768|gb|ADH85578.1| GAF sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 577 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/244 (9%), Positives = 67/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IR 54 + + L + + AL L I HD + + I + ++ ++ +++ I Sbjct: 181 RQQMEDQLFQARKMEALGILAGGIAHDFNNILTPILINAQMAKLEARDNPILEQSLQQIE 240 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGE 107 ++ A ++ + I LG + + + Sbjct: 241 QATERAGALIQQILDFNRQGKHEPQPIQLGPIIKEALKFLRSTVAPNIEMEYTKKVDHDM 300 Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 + ++++NL + A ++ + ++ ++ Sbjct: 301 VAADPTQMLQVIMNLALNAAYAMRDSGGRLEIELNAGDRLPPVAAPDAEQQESWLKMVVR 360 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +G PE +I D + + + V + + + Sbjct: 361 DHGPGIN-PEHLHRIFDPFFTTKGKGEGSGMGLAVVHGIVSNHGGTINCYSQPGQGATFE 419 Query: 211 ALLE 214 LL Sbjct: 420 ILLP 423 >gi|237719620|ref|ZP_04550101.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229450889|gb|EEO56680.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1341 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56 K ++ L + I H+I +PI I ++LL G + + + + Sbjct: 807 EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108 + + + G + + E + + E+ Sbjct: 865 GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +R +I + A GG + + + D E +FS+ NG + Sbjct: 925 CLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVK 984 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + ++ + E L+K Sbjct: 985 IFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037 >gi|229111063|ref|ZP_04240622.1| hypothetical protein bcere0018_33100 [Bacillus cereus Rock1-15] gi|228672426|gb|EEL27711.1| hypothetical protein bcere0018_33100 [Bacillus cereus Rock1-15] Length = 490 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 255 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 314 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 315 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 374 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 375 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 433 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ RL + ++ L Sbjct: 434 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 480 >gi|17548102|ref|NP_521504.1| two-component sensor kinase KDPD transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430409|emb|CAD16882.1| probable two-component sensor kinase kdpd transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 937 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55 A++ + S L L + + HD+ +P+ + E L +Q + Sbjct: 691 AQDALLRIESERLRNSLLAAVSHDLRTPLTGLAGMAETLLRTQPPLSPLQAEAAEAIGEQ 750 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTGEK 108 + + + +A V + IE++ ++ Sbjct: 751 AQRMRAMVTNLLDMARLQNHDVKLRLEWQSIEELVGAALKGTPLPTHAVVVDDLADLPLL 810 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPE- 162 ++L NL A P G +V I +E ++ +G Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVVHDAAHGDEMCVRVRDHGPGVPAGAE 870 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ ES + + + R+ E D L Sbjct: 871 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPADGGACFVVALP 924 >gi|327395665|dbj|BAK13087.1| sensor protein KdpD [Pantoea ananatis AJ13355] Length = 497 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 58/227 (25%), Gaps = 18/227 (7%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56 + L L S + HD+ +P+ + E+L ++ + + Sbjct: 258 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 317 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 L R+ G + + + V++ + + + Sbjct: 318 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGREVELDLPEDIVLIKG 377 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + ++ NL + I ++ G + F + Sbjct: 378 DSTLLERVFTNLIENSLKYAGNCAPRGIRAWCENTRLEIAIWDGGPGIAQNDLTRIFDKF 437 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ ES + + + + ++ E + L Sbjct: 438 SRGDKESAVPGVGLGLAICKTIIESHGGQIWAENRAEGGACFRLSLP 484 >gi|225870884|ref|YP_002746831.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047] gi|225700288|emb|CAW94548.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047] Length = 450 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 26/224 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68 L S + H++ +P+ ++ + LE LDE +++++ + L R Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270 Query: 69 LAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + T + + + I L + Sbjct: 271 IDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDNDKM 330 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171 +++ N+ A P GGK+ ++++ + + I S+ G + F + + Sbjct: 331 TQVIENILNNAIKYSPDGGKIIVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + +L Sbjct: 391 ARSRAQGGAGLGLAIAKEIIKQRRGFIWAKSDYGKGSTFTIVLP 434 >gi|116873948|ref|YP_850729.1| sensor histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742826|emb|CAK21950.1| sensor histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 459 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + D+ Sbjct: 227 KMASELEKSETARQEFVANVSHELQSPLTSMQGFARLLSSGTLTDKEQAEYLTVLSEETA 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+ G + + + + ++ NG + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQVRLYEKATNVFVEVQDNGVGISKTDMAKIFE 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + ++ + + + L K Sbjct: 407 RFYKSNQSRTREEGSSGLGLSICQKIIALHHGEIIVKSTPEKGTTFTVKLPK 458 >gi|39998228|ref|NP_954179.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39985174|gb|AAR36529.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298507165|gb|ADI85888.1| response receiver histidine kinase [Geobacter sulfurreducens KN400] Length = 484 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 +I + + S + H++ +P+ A+ E L + ++ ++ I + Sbjct: 252 DITERKEMERMKDEMISAVSHEMHTPLTAMMGFTEFLLENEVDRDLQKNYLKTIYRETER 311 Query: 60 AIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + ++ L + + R+ V + + Sbjct: 312 LNELITNFLQLQRLKASMVKFRITPVAVGLLVADVVSLYAAASKKHRIVVECPPDLPPVR 371 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++ + A P GG VTI + + ++ G F + Sbjct: 372 GNEEQLYQAISNLVSNAIKYSPDGGDVTIGASAAADIVTLWVRDQGIGISPEFQEKIFER 431 Query: 167 IVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + R E L Sbjct: 432 FFRVDNSDRRKVGGAGLGLTLVREIVATHGGRSWVESSPGKGSTFFISLP 481 >gi|328951449|ref|YP_004368784.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] gi|328451773|gb|AEB12674.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] Length = 429 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 65/222 (29%), Gaps = 12/222 (5%) Query: 1 MAKNICFNL------SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 +A+ + L + AL + + H++ +P+ + LE L E D + R Sbjct: 200 LAQALNQALENIRARQQAERAAL--AEVAHELAAPLSLVAGHLESLAETHAGDARLLAAR 257 Query: 55 LSSMSAIIRLKFMRL--AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ + + + ++ + + V E Sbjct: 258 DAARELLYTSQDLLTLARGELERPLELRVFDLAEVAARVAREYPGVALAVEGPAEVAGSP 317 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++ NL A + V +++ ++ E ++ G E ++ + Sbjct: 318 ERMTQLVRNLVRNAVQASGGTAGVRVALWATEEEVYLEVRDQGPGIPPEELP-RVFERFY 376 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ + + +L Sbjct: 377 TRR-GGAGLGLSVAQRIARQHGGEIRVASEVGKGSRFTVVLP 417 >gi|323464229|gb|ADX76382.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus pseudintermedius ED99] Length = 566 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 22/224 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 +L + + + H++ +PI ++ E L + DE + +I S ++ Sbjct: 343 ENLRSEFVANVSHELKTPITSMKGFTETLIDGAKNDEASLDLFLNIILKESNRIQSLVED 402 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERA 116 + + L D+ V + +V + + Q+ + + + Sbjct: 403 LLDLSKIEQNTTLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNVTAMADENKIS 462 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 ++++NL A P VT++V + + G EK+ +I + Sbjct: 463 QVIVNLMTNAVNYSPENRTVTLAVYRENQHPVIEVIDQGIGIGEKEKY-RIFERFYRVDK 521 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +L Sbjct: 522 ARSRDSGGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565 >gi|319892739|ref|YP_004149614.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus pseudintermedius HKU10-03] gi|317162435|gb|ADV05978.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus pseudintermedius HKU10-03] Length = 566 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 22/224 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 +L + + + H++ +PI ++ E L + DE + +I S ++ Sbjct: 343 ENLRSEFVANVSHELKTPITSMKGFTETLIDGAKNDEASLDLFLNIILKESNRIQSLVED 402 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERA 116 + + L D+ V + +V + + Q+ + + + Sbjct: 403 LLDLSKIEQNTTLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNVTAMADENKIS 462 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 ++++NL A P VT++V + + G EK+ +I + Sbjct: 463 QVIVNLMTNAVNYSPENRTVTLAVYRENQHPVIEVIDQGIGIGEKEKY-RIFERFYRVDK 521 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +L Sbjct: 522 ARSRDSGGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565 >gi|15893609|ref|NP_346958.1| sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15023161|gb|AAK78298.1|AE007546_4 Sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] gi|325507731|gb|ADZ19367.1| Sensory transduction histidine kinase [Clostridium acetobutylicum EA 2018] Length = 498 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +++ + L S I HD+ +PI +I +E + + E M+ + + Sbjct: 255 LKESVELQAQYENNRKELISNISHDLKTPITSIKGYIEGIRDGVADTPEKMEKYVNTIYN 314 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + ++ +D + D + + EK ++ Sbjct: 315 KTQSMNYLIEELLTYSKLDLKKLPFYFIDMDFVSYMNDLMEEFKFDVEKNNMEFSYDNHI 374 Query: 116 -------------AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160 +++ N+ + + + GK+++ V + E + +K NG Sbjct: 375 KGKANVRIDVQNINRVISNIISNSIKYMDKEHGKISVEVDSNNEEVLVGIKDNGMGISEE 434 Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214 P F + + + + E+ + + H S L+ Sbjct: 435 ALPYVFDRFYREDFSRNTSKGGSGLGLAICKKIIEEHGGSIWAKSQKGHGTEIWFSIKLK 494 >gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 1021 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA++ S L + + + H+I +P+ AI +L ++ + + + Sbjct: 647 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 704 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + Y L L + V + Sbjct: 705 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 764 Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A G + N F ++ G ++ Sbjct: 765 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKD 824 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + K + + ++ L Sbjct: 825 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGKGSKFWFTLP 874 >gi|196231886|ref|ZP_03130742.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224008|gb|EDY18522.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 672 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 15/232 (6%), Positives = 54/232 (23%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L + L+ L I H++ + + + E+L ++ + Sbjct: 289 QRRLEQRLQQKEKSVLLDTLAGGIAHELNNKLLPVLGYAEMLQLRARDNMELSGWCDVIR 348 Query: 59 SAI----IRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKI 109 + + L + + + + + Sbjct: 349 QSTVEAAELTGQLLQLSRPPALEPRACDLVAIVHAAMNMLRFRLRELSCEPVLDLPARLV 408 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKF 164 L + A++ + + ++ + ++ G+ Sbjct: 409 PLHADPAQLKQVIVNLCFNAIDAMSGGDRPRLHLSLLDEDDGVCLRVQDAGSGIPEECLP 468 Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ + E + L Sbjct: 469 -RIFDPFFTTKGVQQGTGLGLSVCFSIIQQHGGTIEVESTGPEGTTFAIWLP 519 >gi|170764235|ref|ZP_02638867.2| sensor histidine kinase [Clostridium perfringens CPE str. F4969] gi|170715233|gb|EDT27415.1| sensor histidine kinase [Clostridium perfringens CPE str. F4969] Length = 423 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + + E +L+ + + Sbjct: 198 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 257 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A K +++ + + I+L ++ + Sbjct: 258 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 317 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 318 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 377 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 378 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 420 >gi|110798722|ref|YP_697021.1| sensor histidine kinase [Clostridium perfringens ATCC 13124] gi|110673369|gb|ABG82356.1| sensor histidine kinase [Clostridium perfringens ATCC 13124] Length = 310 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + + E +L+ + + Sbjct: 85 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 144 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A K +++ + + I+L ++ + Sbjct: 145 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 204 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 205 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 264 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 265 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 307 >gi|18311313|ref|NP_563247.1| two-component sensor histidine kinase [Clostridium perfringens str. 13] gi|168210365|ref|ZP_02635990.1| sensor histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|18145996|dbj|BAB82037.1| two-component sensor histidine kinase [Clostridium perfringens str. 13] gi|170711535|gb|EDT23717.1| sensor histidine kinase [Clostridium perfringens B str. ATCC 3626] Length = 467 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + + E +L+ + + Sbjct: 242 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 301 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A K +++ + + I+L ++ + Sbjct: 302 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 361 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 362 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 421 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 422 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 464 >gi|323698747|ref|ZP_08110659.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323458679|gb|EGB14544.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 305 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 67/231 (29%), Gaps = 23/231 (9%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLI 53 + S ++AL L + I H+I +P+ I EL+ + +I Sbjct: 73 EQLIQSQRVLALGELSTGIAHEINNPLNIILQEAELMRYDLALAPTAETMEEVRSSLDVI 132 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEK 108 + V + + + + + + + + + Sbjct: 133 YAQVSRCSDITHKLLDLARNRKPVSQPADINRLVEDMLELVEREAGPREIHLHRRLSQDL 192 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++LNL + A ++ + G + I+ N ++ G E Sbjct: 193 PTVISDPPLLRQVILNLLINAIQAVDKDGDIFITTHREGNMAYTEIRDTGPGI-SEENRK 251 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + +E + + + Sbjct: 252 RIFNPFFTTKAPGQGTGLGLSVSLRIINELGGDIQVASAPGKGATFTVRIP 302 >gi|302036149|ref|YP_003796471.1| putative sensor protein PilS [Candidatus Nitrospira defluvii] gi|300604213|emb|CBK40545.1| putative Sensor protein PilS [Candidatus Nitrospira defluvii] Length = 619 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 24/224 (10%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L L + + + H+I +P+GA+ ++++L + G +D +L+ ++ A + Sbjct: 377 LANLGEMSAGMAHEIRNPLGALAGAMQMLRQDVGSDDTSQRLMDIAIREARRLDNIITEF 436 Query: 71 FGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKI 118 Y D L D +I+ + + + ++ Sbjct: 437 LQYARPPALNLAEHDLNKVLADTLDLIQHEARSRTGITIVSRMAPNQLMAQVDQDQLKQV 496 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNEN--------IFSLKINGNLARFPEKFTQIVDG 170 NL A ++ GG +TI+ + E + + NG + F +I Sbjct: 497 FWNLATNAFDAMSAGGTLTIATGSRQVEVGGRRSDVIEIAFQDNGEGI-PKQNFDKIFLP 555 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + E H L Sbjct: 556 FFTTKKEGSGLGLAQVHRIVELHEGWIKVESEIGHGARFVVCLP 599 >gi|295112251|emb|CBL29001.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain. [Synergistetes bacterium SGP1] Length = 513 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 18/223 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 L L + + H++ +P+ + + +E + + E + L ++ + Sbjct: 264 EQERLRQRLMTDVVHELRTPLTVVRSQIEAIADGVWEASPERLALCVSEMERLSGLIRDV 323 Query: 68 RLAFGY--------TGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA 116 VD L + R ++ + Sbjct: 324 ESVTRMEGDAVAIKPEPVDLSAFLSSVLDAFRPLFGRTGVALRRSLAPSLHAEVDEDRFR 383 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 ++ NL A P+GG V + ++ +E + ++ +G+ + F + + Sbjct: 384 HVMDNLLSNALRYTPKGGWVEVRLRRRGDEAVIEVQDSGSGISPQDLPHVFDRFYRADES 443 Query: 174 ST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 444 RARVTGGRGVGLSIARAVVEAHGGTIGVESESGVGSCFTVTLP 486 >gi|229077963|ref|ZP_04210572.1| hypothetical protein bcere0023_6530 [Bacillus cereus Rock4-2] gi|228705301|gb|EEL57678.1| hypothetical protein bcere0023_6530 [Bacillus cereus Rock4-2] Length = 463 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFFTRIAEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVIV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + + Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHDGNITVTSEVDYGSCFIISLP 454 >gi|182678949|ref|YP_001833095.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634832|gb|ACB95606.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 847 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 69/236 (29%), Gaps = 31/236 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S + A+ L + HD + + AI +LL + + I+ ++ A Sbjct: 470 QSQKMQAIGQLAGGVAHDFNNVLTAIIGYSDLLLANQRPTDPSFQDIMQIKQNANRAAGL 529 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116 ++ + ++ LGD+ ++ + + + Sbjct: 530 VRQLLAFSRRQTLRPQVLQLGDVLSDLQMLLRRLVGETIELDLRHGRDLWLVKADLNQFE 589 Query: 117 KILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161 ++++NL + A ++P + + ++ NG Sbjct: 590 QVIVNLVVNARDAMPDGGRIALRTRNIEPEACAAFSEKTVRPAEYVLIEVEDNGQGIPI- 648 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + + V + + + + + S LL + Sbjct: 649 DVKDKIFEPFFTTKEVGKGTGLGLAMVYGIVKQTGGTVFCDSVLGVGTTFSILLPR 704 >gi|126732983|ref|ZP_01748743.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Sagittula stellata E-37] gi|126706555|gb|EBA05632.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Sagittula stellata E-37] Length = 640 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + S L ++ + + + H+I +P+ I +L++L E + LI Sbjct: 402 LEDTWRQLVMSEKLASIGEITAGVAHEINNPVAVIQGNLDVLRETLGDAAQPVQTEIDLI 461 Query: 54 RLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104 + + +VD + D ++E + ++ Sbjct: 462 DGQVGRINAIVGKLLQFARPDDFSGTERAVDLAPVVRDCLVLVEHVLTRADIRVETELDE 521 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 E ++++NL + A ++ + +D + ++ G Sbjct: 522 APRVAIGGGEMQQVVINLVVNAVHAMEHSGTIFLTLNAEPRDGRPGAALRVRDTGPGVPD 581 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L R+ + L Sbjct: 582 KLLDTVFDPFFTTKQAEGTGLGLSISQTLIQRAGGRISYRNPPEGGAEFLVWLP 635 >gi|30019490|ref|NP_831121.1| sporulation kinase [Bacillus cereus ATCC 14579] gi|29895034|gb|AAP08322.1| Sporulation kinase [Bacillus cereus ATCC 14579] Length = 354 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 127 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 186 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 187 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 246 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 247 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 305 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 306 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 349 >gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 589 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + E+ Q+I Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410 Query: 56 SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S+ + + Y + I + + + + Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNITLHQDISL 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + + ++ NL A G V+I+V K+ +K +G+ + Sbjct: 471 TEEEFMFDEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDGLKIDIKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + D + + Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFTFYIP 586 >gi|269103904|ref|ZP_06156601.1| osmolarity sensory histidine kinase EnvZ [Photobacterium damselae subsp. damselae CIP 102761] gi|268163802|gb|EEZ42298.1| osmolarity sensory histidine kinase EnvZ [Photobacterium damselae subsp. damselae CIP 102761] Length = 450 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 22/207 (10%), Positives = 68/207 (32%), Gaps = 8/207 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 ALL + + HD+ +P+ I + E++ ++ + + +++ + + +++ Sbjct: 232 ALLLAGVSHDLRTPLTRIRLATEMMSPEDGYLAESMIKDTEECNEIISQFMDYLKSTKKQ 291 Query: 74 TGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 V+ L ++ + + ++ G + + + NL + A Sbjct: 292 EEEDVELNTLLQEVAEAEGGYERHIEQELGQVPGVVRANTVALKRCVSNLVVNAIRYGDG 351 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVI 187 K++ + F ++ NG E S + + V Sbjct: 352 WIKISSGASADRQTAWFCVEDNGPGIAPDEVTRMFQPLTRGDSARGSDAEGTGLGLAIVK 411 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 + +++ + + + + L Sbjct: 412 RIIDQHEGTINVTNRSEGGLRVQINLP 438 >gi|228920151|ref|ZP_04083500.1| hypothetical protein bthur0011_11680 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839607|gb|EEM84899.1| hypothetical protein bthur0011_11680 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 402 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|220934271|ref|YP_002513170.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219995581|gb|ACL72183.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 915 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 64/244 (26%), Gaps = 31/244 (12%) Query: 2 AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQ 51 KN L+ + L + I H++ +P+ AI ELL++ + ++ Sbjct: 269 QKNRELTLARGKAEEANQRKSQLLASISHELRTPLSAIQGYAELLEQYGDLDDRDLGWLE 328 Query: 52 LIRLSSMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +I SS + + + + G S + + + + V Sbjct: 329 IINTSSKDTLKLVNDLLDVARLESGRITIHRSQFQLGKCLSEVIGICRRSLRDRQVDVTL 388 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKING 155 + +++ NL A G + + + ++ G Sbjct: 389 IMSPETPASITSDHLRFKQVITNLLSNALKFTANGQVNVHASVRQEGRTRQLEICVRDFG 448 Query: 156 NLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + ++L + + + Sbjct: 449 PGIEPDDLPHIFEPFFQSRHPEVRRHSGAGLGLNITRGITELLGGQILVDSAPGTGSLFT 508 Query: 211 ALLE 214 LL Sbjct: 509 LLLP 512 >gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 571 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 16/234 (6%), Positives = 57/234 (24%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 ++I + + + H++ +P+ +I +E L + +++ S+ Sbjct: 331 QDITALRQLEQMRRDFVANVSHELRTPLTSIQGIIEGLIDGVIPAAEAGRYLRVAHGESL 390 Query: 59 SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ + R + I ++ ++ + Sbjct: 391 RMNRLVQDLLDLAALEAGRADWELHAVELGEILDRVEIRLQAPRSEKGLAIRREVPPDLP 450 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE--- 162 L ++ L + ++ + N +++ G + Sbjct: 451 PLLANENRLEQVLTNLVENAVRFSPPGGEITVAAEKRPHNRITVTVRDQGPGIPPEDLPH 510 Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + E L Sbjct: 511 VWDRFYRVEKSRARETGGTGLGLAIVKQIVEAQGGEVAVESSPGEGASFFFTLP 564 >gi|307319788|ref|ZP_07599212.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894519|gb|EFN25281.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 1229 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 30/239 (12%) Query: 4 NICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54 L+ L A L + I H++ P+ AI + + + ++ + Sbjct: 988 QEELRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANSHACYRWLSADPVNIERAK 1047 Query: 55 LSSMSAII--------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 +++ I K G D + + + + Sbjct: 1048 ITTERVIRDAKSAADVVSRIRALFKQSVENRGILVLSDVISEACSLVAAEALRRRIRLHI 1107 Query: 101 QVSWT-GEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGN 156 V + ++L+NL ++ V + + +E + NGN Sbjct: 1108 DVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNKTVDVRMHQVDDEVRIEIGDNGN 1167 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 FPE +I + + + + + + RL E + L K Sbjct: 1168 GVAFPE---RIFEPFFTTKENGMGMGLAISRSIVEAHGGRLWAEKNEPRGARFVFTLPK 1223 >gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 784 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 34/246 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L + +AL + + H+I +P+ AI ++L + + + Sbjct: 356 RKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLLGHLEDPDNRNCV 415 Query: 54 RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + L + + + + + QV D VD + Sbjct: 416 MIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQ 475 Query: 100 VQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKIN 154 V+ ++L+NL A G FS+ Sbjct: 476 VEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGADPPVVEFSIVDT 535 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G E+ ++ V + L + E Sbjct: 536 GIGI-SKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEMSLESELGEGST 594 Query: 209 LSALLE 214 L Sbjct: 595 FFVRLP 600 >gi|323698745|ref|ZP_08110657.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323458677|gb|EGB14542.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 558 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 67/230 (29%), Gaps = 25/230 (10%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------------VGIEDEVM 50 + S + +L L + + H++ +P+ I S + + ++ Sbjct: 317 IQSSKMASLGKLAAGVAHEVNNPLSIIRESAGWIRDIINDGELGEGPAVDELQEAVSDID 376 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + + + L F R VD + + + + V + Sbjct: 377 RHVERARTVTHRMLGFARRMEPLQEDVDLNMLANQTASFLENETRHRNIEVVTELDPDLP 436 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ + +I + A ++ R G++T+ + + ++ +G E + Sbjct: 437 LITTDANQIQQVILNLLENAIDAIDRDGQITVITRTDDMGVVLNIADSGPGI-PKEYLAK 495 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + V + + + L Sbjct: 496 VFDPFFTTKPTGEGTGLGLSIVYSTLSKLGGTIKVNSESGQGTTFTIHLP 545 >gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 595 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 65/236 (27%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + E+ Q+I Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEDDRKEIAQIIYD 410 Query: 56 SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S+ + + A Y + + + + Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTALHYVKVNLDEFLEKIFRKFSGVAKEKNISLTDDISL 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + + + ++ NL A GG V I+VQ K+ +K +G+ + Sbjct: 471 NETEFAFDEDKMEQVFTNLIDNALRHTQSGGTVHIAVQSVKDGLKIDVKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + D + + Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIP 586 >gi|289674924|ref|ZP_06495814.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 334 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 95 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 154 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + Sbjct: 155 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCHPEHWAV 214 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 215 GDSQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 273 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 274 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 325 >gi|322419866|ref|YP_004199089.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126253|gb|ADW13813.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 663 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 + + M+ V L + HD + + I +L E + E+++ I ++ Sbjct: 285 LMEEQLRQSQKMEAVGQLAGGVAHDFNNVLTVIAGYANILKMDIPEESAQHELVEQIAVA 344 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109 + A + + LG++ +E F+ + + Sbjct: 345 AERAAQLTRGLLAFSRKQAMAPQRTDLGEVVHRVEQFLTRVIGEDIQLKTELLPEPLPVL 404 Query: 110 DLSRERAKILLNLFMVAHASL------------PRGGKVTISVQDSKNENIFSLKINGNL 157 + ++L+NL A ++ S + + NG Sbjct: 405 VDFGQIEQVLINLAANARDAMPDGGVFTIATGLYDPEGAGHHASASGRRAVIIVADNGKG 464 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + ++K + V + L Sbjct: 465 M-DEETSRRIFEPFFTTKEVGKGTGLGMAIVYGIVQQHKGDIKVGSRPGEGTVFTIELP 522 >gi|254744763|ref|ZP_05202441.1| sporulation kinase A [Bacillus anthracis str. Kruger B] Length = 478 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 243 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 302 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 303 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 362 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + + + G ++ +++ Sbjct: 363 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 421 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 468 >gi|162454289|ref|YP_001616656.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164871|emb|CAN96176.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 539 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 24/226 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAII 62 S L A+ L + + H+I +P+ + L+ + + ++ I++ Sbjct: 312 QSEKLAAVGTLAAGLAHEIRNPLNGAQLHVTFLERGLARAGLKDPDTLEAIQVVRDEIRR 371 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLSR 113 + + + + + E V+V I L Sbjct: 372 LSALVSEFLDFARPKPLDLRPTPVVPLCERAARVAASSDGAGAQAAVKVDLPSTDIMLDL 431 Query: 114 ER---AKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++LLNL A ++ G VT+ + + ++ +G P+ I Sbjct: 432 DPAKIEQVLLNLLRNAIEAVDAAGGGTVTLRARRQPRHAVVEVEDDGPGIASPDAP--IF 489 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + +++ + + + L Sbjct: 490 DPFFSTKPNGTGLGLAIAHRIVTDHEGTIEFQSRPGK-TLFRVTLP 534 >gi|90409825|ref|ZP_01217842.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum 3TCK] gi|90329178|gb|EAS45435.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum 3TCK] Length = 940 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 61/243 (25%), Gaps = 32/243 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------M 50 + + L + + + + H+I +P+ + +LL + + E + Sbjct: 385 TQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKTDLTQEQRHHLLTLL 444 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---------DKRVQ 101 + L F ++ G + + D+ IE + Sbjct: 445 DSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKGLGFSIQCN 504 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + +IL N+ A +G + I + + G Sbjct: 505 FDYNSWFFADKSRIRQILFNVINNAIKFTDKGEVSVSLNQDQCDDPRERRLIITTQDTGI 564 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 ++ QI D + V L + + E + Sbjct: 565 GI-AEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVSQLVNLMNGDIQLESTYGKGSTFT 623 Query: 211 ALL 213 L Sbjct: 624 ITL 626 >gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 543 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 53/228 (23%), Gaps = 20/228 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDNKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCEDIIRNYDIKEDKPVPVLLAPDLPEY 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + +++ N A G V +++ F++ G + Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIVLEYHYKAESNEIEFAVTDTGMGIAPDKVNQ 478 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 S + + + E + Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGNGSRFWFT 526 >gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 508 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 60/223 (26%), Gaps = 25/223 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR--------- 63 A L + H++ +P+ AI E+L E + + ++ +R S Sbjct: 280 AFLA-NMSHELRTPLNAIIGFSEVLIEQMFGEVNAKQLEYLRDIHASGHHLLTLINDVLD 338 Query: 64 ------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + L + + + G+ + R+ + Sbjct: 339 LSKIEAGRMELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDGLGDWVADPRKIKQ 398 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE--- 173 +++NL A P GG VT+ + ++ G E+ + Sbjct: 399 VVVNLLSNAVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEFRQAGTD 458 Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + + L Sbjct: 459 PLRKSEGTGLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLP 501 >gi|153854045|ref|ZP_01995378.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814] gi|149753427|gb|EDM63358.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814] Length = 899 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + L + D QL Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNSDSFDNDTKKQLYMDIYD 717 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + + D + + + + + + V E Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRITEDLMDDVITEALHHINRKSEEHHISVESKEEF 777 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++N+ A P+ + I + + I S+ +GN E Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKRGKQAIVSISDDGNGI-ADEIKP 836 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + S + + + + L H V + L Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891 >gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 946 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50 + + L A LL S H++ +P+ + N++ L + ++ Sbjct: 686 LRDAAVRAAENERLAATGLLTSGFAHEVRNPLNGLMNAMLPLRESILGSQVDPDTTRAML 745 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTG---SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + + + V+ L V+ I D V + + Sbjct: 746 DVMEECGTRIRHLAESLLSFVRTSDRLVPVNLGASLDSTLSVLAWKIPPDVLVVRDYQCD 805 Query: 108 KIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ +NL A ++ G++ IS + + S+ G PE Sbjct: 806 VPITGDPGSLNQVWVNLIDNALRAVGDKGQLRISTEHDGATAVVSITDTGTGI-KPEDME 864 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + L Sbjct: 865 RLFQPFFSTRAAGEGTGLGLALCRRIVLRHGGLIQLTSEWGKGTRCEVRLP 915 Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 65/251 (25%), Gaps = 40/251 (15%) Query: 2 AKNICFNLSSMDLVALLCS-------------RICHDIISPIG----------------- 31 A+ ++ L A L + + H++ +P+ Sbjct: 268 ARTQELVEANSKLAAALDTQKELIRLKSEFFDNVSHELRTPLTLILLSLESLLQRDPSAY 327 Query: 32 --AIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV 89 ++ L ++ +++LI A + +RL + L L +V Sbjct: 328 PDSVRQHLATMERSA--HRLLKLINNLLDLAQMEAGKLRLRYQAVELHSLLTSLLSPFRV 385 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 + + + + G + NL A +G V + V + + Sbjct: 386 MAEKKGLTLTLVGQAVGPIHGDVERIEVVFQNLVSNALKFTQQGS-VQVRVSEDSSSVFV 444 Query: 150 SLKINGNLARFPE---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ G + F + + I V + + + Sbjct: 445 EVEDTGPGIAPQDIDVIFDRFAQADSTGTRRFGGTGIGLALVKETVDLHSGSIRVSSVVG 504 Query: 205 HNVVLSALLEK 215 L K Sbjct: 505 KGATFRVQLPK 515 >gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 708 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 57/240 (23%), Gaps = 30/240 (12%) Query: 5 ICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + L + + + + H++ +P+ AI E+L+E+ ++ + L+ Sbjct: 461 LQEALHKAEAASRAKSTFLANMSHELRTPLNAIIGYSEMLEELASDEGLEDLLPDIQKIR 520 Query: 61 IIRLKFMRLAFGYTGSVDSL------------------IGLGDIEQVIEDFIAVDKRVQV 102 + L + + + + Sbjct: 521 SAGKHLLTLINDILDLSKIEAGKMELYLESFDLADLVGDVIATLHPLAHKNSNKLEVSCC 580 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLAR 159 S G + +IL NL A G + ++ + + G Sbjct: 581 SDLGVVFTDLTKVRQILFNLLSNALKFTENGTVRLSATREMGSNSDWVYLCVADTGIGMS 640 Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + E + L+ Sbjct: 641 VEQQQCLFEVFNQGDASTTRKYGGTGLGLAISRRFCQMMGGDITVESELGVGSTFTVHLK 700 >gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 948 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V + + ++ G Sbjct: 572 EPDVPLTLHGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVCRAGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDTEPGMGSQFTIRIP 689 >gi|239906645|ref|YP_002953386.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796511|dbj|BAH75500.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1136 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 70/240 (29%), Gaps = 31/240 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L S + A+ L I HD + + +I NS EL + ++ ++ + + Sbjct: 752 ERQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSTELALMDMAPDDPMEDDLRRVLKAGE 811 Query: 59 SAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +K + + ++ + + +I + + ++ V + + Sbjct: 812 RGSRLVKQILSFTRPSQAGFAPINVADVVNEAAGLIRASLPRNIKIVVETPDAPVACRAD 871 Query: 115 R---AKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGN 156 +I++NL A ++ + + ++ G Sbjct: 872 PTQLHQIVMNLCTNAFQAMRPTGGVLALRLTEDSLDEDQAGQVGTRAGRCARITVADTGP 931 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + V + ++ + + V L Sbjct: 932 GI-AGDIVDKIFDPFFSTKQKNEGTGLGLAVVRGIVKSHRGGVRVTSAPGEHTVFDIFLP 990 >gi|229132830|ref|ZP_04261675.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196] gi|228650657|gb|EEL06647.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196] Length = 351 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 74/233 (31%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + L + + + +K +++ +K+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKELELDLDMDKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ K S+ G + Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + +K ++ E ++ + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHKGKIKVESVEGNGTEFIVRIP 346 >gi|94967538|ref|YP_589586.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94549588|gb|ABF39512.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 478 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 +A + S L + L + H+ +P+ +I S+ L + E++ +I Sbjct: 241 LATSRAAR-ESEQLRSALLDSVTHEFRTPLTSIKASVTTLLEGSLADAAARAELLTIINE 299 Query: 56 SSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--- 105 + + +L + + + V V Sbjct: 300 ETDRLNRLVGEAAEMARLDSRVITLQRRQFALSEVVETVLDEQISTLRKHPVTVELPKGL 359 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++L +L A + IS + + + S+ G E Sbjct: 360 PPVYADFDRIRQVLTHLVENAAKYSENDTPIRISAELKGDFIVTSVADRGPGIDSFEQTL 419 Query: 163 KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G + + +L + L V S L Sbjct: 420 IFDKFYRGEKQRYAAAGTGMGLAISKVLIEAHGGTLTVVSQIGQGSVFSFTLP 472 >gi|255012238|ref|ZP_05284364.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 548 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K ++ L + + H+ +P+ I + +EL+ + + Sbjct: 8 EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 65 Query: 62 IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105 ++K + D + + A K + Sbjct: 66 QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 125 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + K+L NL A +P GK+ I + ++ I ++K +GN E Sbjct: 126 VFIWIDDWQMRKVLFNLLSNAFKHVPDKGKINILTSTTPDQVIIAVKDSGNGISKEE-QE 184 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D ++ I + + + E + L K Sbjct: 185 RIFDRFYQADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 240 >gi|311235341|gb|ADP88195.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 492 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 + + L +L L S I H + +P+ I S ++L + + +++ Sbjct: 250 LENRQNQLVQEKKLASLGVLTSGIAHQLNNPLNNISTSCQILQEDIGSGDAELHARMLRN 309 Query: 53 IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTG 106 I + + L+F R + ++ + + V Sbjct: 310 IHQEVLRSRDIVKGLLEFAREKDFSLVPQRLADVVERAVSLVSSEVPAGVTLSASVPPDM 369 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163 ++ + L+NL + A ++P + ++ ++ G PE Sbjct: 370 VVPLDAQHMQEALINLLINAIQAIPAPPGTITVSATRVPGRDMVALRVEDTGTGI-PPEH 428 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + V + ++ R+ E L Sbjct: 429 LGRIFDPFFTLKAVGKGTGLGLSIVFGVVKKHGGRVTVESEPGKGTAFIIHL 480 >gi|237755742|ref|ZP_04584348.1| putative integral membrane sensor signal transduction histidine kinase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692106|gb|EEP61108.1| putative integral membrane sensor signal transduction histidine kinase [Sulfurihydrogenibium yellowstonense SS-5] Length = 673 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV---------------GIED 47 + S L L + I H+I +P+ I+ S ++ + Sbjct: 436 ENQIIQSEKLAVIGRLAAGISHEIKNPLAIINQSAFMVKRRIQKLCSNVDNIDSILESIE 495 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWT 105 + + + ++ L F + + V+ + + ++ Sbjct: 496 RIERNVIRATDIIERLLNFSKPYYTKAEKVNLREVIEEAIKLAILQAQKSNISFSKKLMD 555 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEK 163 ++ +NL + A ++ GK+TI + + +K G E Sbjct: 556 AYIKGDKNALIQLFINLILNAIEAIENKGKITIKIVPLKREGNVKVVIKDTGKGI-PEEI 614 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + ++ ++L + + Sbjct: 615 MDKIFEPFFTTKEKGTGLGLAVSYRIVQDHGGKMLVNSKEGEGTEFILIFP 665 >gi|218233859|ref|YP_002366122.1| sporulation kinase B [Bacillus cereus B4264] gi|228938554|ref|ZP_04101162.1| hypothetical protein bthur0008_12190 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971433|ref|ZP_04132059.1| hypothetical protein bthur0003_12130 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978046|ref|ZP_04138425.1| hypothetical protein bthur0002_12500 [Bacillus thuringiensis Bt407] gi|229108895|ref|ZP_04238499.1| hypothetical protein bcere0018_11710 [Bacillus cereus Rock1-15] gi|229126756|ref|ZP_04255768.1| hypothetical protein bcere0015_12130 [Bacillus cereus BDRD-Cer4] gi|229149640|ref|ZP_04277871.1| hypothetical protein bcere0011_11990 [Bacillus cereus m1550] gi|218161816|gb|ACK61808.1| sporulation kinase B [Bacillus cereus B4264] gi|228633850|gb|EEK90448.1| hypothetical protein bcere0011_11990 [Bacillus cereus m1550] gi|228656696|gb|EEL12522.1| hypothetical protein bcere0015_12130 [Bacillus cereus BDRD-Cer4] gi|228674551|gb|EEL29791.1| hypothetical protein bcere0018_11710 [Bacillus cereus Rock1-15] gi|228781707|gb|EEM29906.1| hypothetical protein bthur0002_12500 [Bacillus thuringiensis Bt407] gi|228788300|gb|EEM36253.1| hypothetical protein bthur0003_12130 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821152|gb|EEM67169.1| hypothetical protein bthur0008_12190 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939063|gb|AEA14959.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 402 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|166030485|ref|ZP_02233314.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC 27755] gi|166029737|gb|EDR48494.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC 27755] Length = 899 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + L + D QL Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDSFDNDTKKQLYMDIYD 717 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + D + + + + + + V E Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRIMEDLMDDVITEALHHINRKSEEHHISVESKEEF 777 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++N+ A P+ + I + + I S+ +GN E Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKRGKQAIVSISDDGNGI-ADEIKP 836 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + S + + + + L H V + L Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891 >gi|162450071|ref|YP_001612438.1| sensory box hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161160653|emb|CAN91958.1| sensory box hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 504 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 66/230 (28%), Gaps = 18/230 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + +++ +A L + H+I +P+ A L LL + Sbjct: 256 ERRAADAEALNAMAPLALGLAHEIRNPLNAAVLELHLLSRGIDRLSDEAIREPMKRRVGI 315 Query: 60 --------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + D+E+ V+ ++ Sbjct: 316 VEAEIARLGRLLGEFLELARPRAPHREPVDLARVVRDVLDLEEEAFASHHVEVVRDLADD 375 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++LNL + A +P GG + +E S+ G Sbjct: 376 CFALGDVEKLKQVVLNLVVNALDVMPDGGVLRACASGDAHEVWLSIGDTGPGIAPTILAE 435 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D + + V + ++ R+ + + L + Sbjct: 436 -IFDPFFTTKAAGTGLGLAIVRKIVDQHAGRVDVDAHAADGTTVRVRLPR 484 >gi|260061102|ref|YP_003194182.1| sensory transduction histidine kinase [Robiginitalea biformata HTCC2501] gi|88785234|gb|EAR16403.1| sensory transduction histidine kinase [Robiginitalea biformata HTCC2501] Length = 484 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 65/231 (28%), Gaps = 22/231 (9%) Query: 6 CFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR 54 LS+ L + ++ H+I +P+ + S++ + + D Q+ Sbjct: 252 ELELSATKLARSEREQAWREMAKQVAHEIKNPLTPMRLSVQSFERKFDPRDPDVGRQVAE 311 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKI 109 S +A ++ + V+E I + + ++I Sbjct: 312 FSKTLIQQIDTLSSIASAFSNFAKMPAQQNETLNVVEIVKLALDIFNEPYIHFMADEQEI 371 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKF 164 +R +++ + + ++ +V + NG + Sbjct: 372 IAKMDRTQLIRVVTNLVKNAIQAVPEVDHPRILVSVAAEDGFVKIMVADNGIGI-EADNR 430 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V + R+ V + L + Sbjct: 431 DKVFEPKFTTKSSGMGLGLGMVKTIVETYGGRIEFTSQKGKGTVFTVYLPR 481 >gi|326387436|ref|ZP_08209045.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370] gi|326208092|gb|EGD58900.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370] Length = 431 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 19/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSSMSAIIRLKFM 67 + H++ +P+ +I +E L + V++ + + Sbjct: 195 FVANASHELRTPLASIIGYIETLSDPEAKIDAATSARFHATVLREAKRLQHLVEDLMSLS 254 Query: 68 RL----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 R+ VD I ++ + ++ + + ++ +++ NL Sbjct: 255 RIEAEKHDIPRDRVDLGQLAASIGAEVDATLGEERIIVSTDEAIVQGDRQQLDQVIRNLI 314 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDS 178 + V + V E + S+ +G + Sbjct: 315 DNSMKYGDPKQPVEVHVARDGREAVLSVTDHGEGIHPDHIPYLTRRFYRTDPGRSRMAGG 374 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + ++ +L ++ L Sbjct: 375 TGLGLAIVKHIVERHRGKLDVTSKLGSGTTVTVRL 409 >gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1] gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1] Length = 949 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 S S+ + LK + ++ + + E + ++ + Sbjct: 512 SNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + QDS S++ G Sbjct: 572 DPDVPPQMVGDPMRLQQVISNLLSNAIKFTDMGCIILHLRQDSD-YLSISVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAVDSEPGMGSQFTIRIP 689 >gi|229189521|ref|ZP_04316537.1| hypothetical protein bcere0002_12000 [Bacillus cereus ATCC 10876] gi|228593966|gb|EEK51769.1| hypothetical protein bcere0002_12000 [Bacillus cereus ATCC 10876] Length = 402 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397 >gi|170764066|ref|ZP_02631165.2| sensor histidine kinase [Clostridium perfringens E str. JGS1987] gi|170663362|gb|EDT16045.1| sensor histidine kinase [Clostridium perfringens E str. JGS1987] Length = 411 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + + E +L+ + + Sbjct: 186 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 245 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A K +++ + + I+L ++ + Sbjct: 246 QKLNKYDEASIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 305 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 306 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 365 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 366 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 408 >gi|206970639|ref|ZP_03231591.1| sensor histidine kinase [Bacillus cereus AH1134] gi|206734275|gb|EDZ51445.1| sensor histidine kinase [Bacillus cereus AH1134] Length = 357 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L E + +I Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQEDNFSEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 240 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 352 >gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 1287 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/255 (10%), Positives = 65/255 (25%), Gaps = 41/255 (16%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H++ SP+ AI +LL + D + + Sbjct: 878 LQQQTEQLREANRMKDEFLAILSHELRSPLNAILGWAQLLRSRKLSDIQIAKAMETIERN 937 Query: 61 IIRLKF---------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + L V + + + +D R+ + + Sbjct: 938 ARMQTQLVEDLLDISRMIRGKLHLHVCTCNLVPLIESAVETVHLAAQAKEIDLRISLIPS 997 Query: 106 GEKIDLSRER---------AKILLNLFMVAHASLPRGGKVTISVQD-----------SKN 145 E +I+ NL A P GG++ I + + Sbjct: 998 PEMPQDHSRFLVSGDIERLQQIIWNLLSNAIKFTPTGGRIEIRLCQSVEDDEKLARTITS 1057 Query: 146 ENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPE 200 + G + F + + + + V L + + + Sbjct: 1058 YAQIQVIDTGIGIKPEFLPYVFDRFRQADSSSTRSYGGLGLGLAIVRHLVELHGGIISVD 1117 Query: 201 II-DDHNVVLSALLE 214 ++ + L Sbjct: 1118 SQGENEGATFTVKLP 1132 >gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] Length = 956 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 63/232 (27%), Gaps = 24/232 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 F + M + S + H++ +P+ +I EL+ + + + + I + Sbjct: 577 TKEFEVDQMK--SEFVSTVSHELRTPLASILGFTELMLNRELKPDKQKKYLTTIYNEARR 634 Query: 60 AIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + Y + + + + +Q+ D + + Sbjct: 635 LTSLINDFLDVQRMEAGKQTYEKKYLRLLPIIEQVIEKQQINTDIHKIKIDDRSIGNDVI 694 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + ++ NL A P GG + I + + ++ G + ++ Sbjct: 695 LGDKSKVEQVFTNLISNAVKYSPGGGDIIIRLYQEDKSVLAEVEDKGLGI-PEDALDKLF 753 Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + + + + Sbjct: 754 TKFYRVDNSDRRRIGGTGLGLSIVQEIMKAHSGSISVASSYGKGSIFTLSFP 805 >gi|312868769|ref|ZP_07728961.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus oris PB013-T2-3] gi|311095755|gb|EFQ54007.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus oris PB013-T2-3] Length = 491 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 66/237 (27%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50 M + + +D + S + H++ +P+ I LE+L G +D + Sbjct: 246 MFNEMLDRMQRYLDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPQVLDDSLAASL 305 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + ++ + + ++ + + + + D + + Sbjct: 306 VETKRMKNLVQEMLDLSRAEQVEINFRDQRTVVNDVVHQVFNNFKMLYPDFTFTLDDDVD 365 Query: 108 K----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L+ L A ++ +++ N ++ G PE Sbjct: 366 EKISVNIYRDHLEQVLVILCDNAVKYSGERKEIHLTLSRGMNTVEIGVQDFGEGI-APED 424 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + L + E + +L Sbjct: 425 AQRVFDRFYRVDKARSRKKGGNGLGLSIAQRLVEGYHGSISLESSLGAGSLFKVVLP 481 >gi|304394453|ref|ZP_07376374.1| phosphate regulon sensor protein PhoR [Ahrensia sp. R2A130] gi|303293363|gb|EFL87742.1| phosphate regulon sensor protein PhoR [Ahrensia sp. R2A130] Length = 375 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 +I +++ + + + + H++ SP+ A+ +E L D+ D + L++ + Sbjct: 133 DISEQIAAEQMRSDFVANVSHELRSPLTALSGFIETLQGPAKDDADASDRFLTLMQAETG 192 Query: 59 SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + A I V + DK ++ E Sbjct: 193 RMTRLIADLLNLSKVEGRQAARPTDEIELQRILARACTLVQQRADDADKVIRFDIPSELP 252 Query: 110 DLSRERA---KILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLAR 159 + + +++ NL A T + S +++ +G Sbjct: 253 SIRGDEDELVQLVQNLLENAVKYSAPGTAIDVSVTPDTRTPGISGPTLTVAVRDHGEGI- 311 Query: 160 FPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E ++ + + V + ++ RL E + L Sbjct: 312 AREHLPRLTERFYRVDDHRGRKSGGTGLGLAIVKHVVQRHRGRLHIESEVGKGSIFKVHL 371 Query: 214 E 214 Sbjct: 372 P 372 >gi|294497206|ref|YP_003560906.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294347143|gb|ADE67472.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 713 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 13/225 (5%) Query: 2 AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 K L S L L + + H+I +P+ ++ + LL E I + + Sbjct: 486 RKKAEEKLRTSEKLAVVGELAAGVAHEIKNPLTSLKGFVHLLKEQHPKDALYIDIMETEL 545 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKI 109 + + ++ K + + + + + V + + Sbjct: 546 ERMNGIVEEFLMLGKPQVMKVESLNMQALVQEVCSLLEPEAVEKEVAFIFERDDQLPKVY 605 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG + I+++ +N L G PE+ +I + Sbjct: 606 GDKNQLKQVFINIIKNSIEAMPEGGAIHITIKIKENHLWLQLADEGQGI-PPERLAKIGE 664 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ D + L Sbjct: 665 PFYSTKEKGTGLGLMVSYRIIKAHHAQMTFSSQLDKGTSVDILFP 709 >gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 915 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 419 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 478 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 479 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLGLYCFI 538 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V+ + ++ G Sbjct: 539 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 597 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 598 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 656 >gi|220908400|ref|YP_002483711.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865011|gb|ACL45350.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 500 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 21/231 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + K + S I H+ SP+ I ++++LL++ + + Q +R S Sbjct: 268 LEKEQELSQMKNK----FISMISHEFRSPMAIISSAIDLLEDNELSEDEKIKFYQKMRSS 323 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + L TG V+ + + Q+ V +G Sbjct: 324 IDQTLQLIDEVLLLGRATGRVELEHSPLDLEKYCSEIVETLQLTTGREHQIIYVCEGTSG 383 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + S +I+ NL A P+ G + ++ N+ IF ++ G + Sbjct: 384 QVGMDSFLLKQIIDNLLSNAIKYSPKSGMIRFTLSLQSNQAIFCIQDWGIGIPEQDQAKL 443 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 FT I + V ++ E + + L Sbjct: 444 FTAFKRAGNVYKIQGTGLGLAIVKQCVDLLHGKIEVESQEGCGTTFTVTLP 494 >gi|189460351|ref|ZP_03009136.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136] gi|189432903|gb|EDV01888.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136] Length = 484 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 73/238 (30%), Gaps = 26/238 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 M KNI L S S I H++ +PI AI SL+LL++ + DE +L + Sbjct: 248 MLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDSRVGDLNDEQKELAQS 305 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + +G + + ++IE I ++ + + Sbjct: 306 IQDNSERLLNITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRVQAEKFNIQIEVQ 365 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLA 158 E +L NL A P G++ I Q N ++ G Sbjct: 366 YPENKIGKLFVDSEKIAWVLTNLLSNAIRYSPENGRIIIGVRQTDDNYIEMYVRDFGKGI 425 Query: 159 RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E + L+ Sbjct: 426 DPRYHQSIFDHYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESEVGKGSCFTLRLK 483 >gi|171322587|ref|ZP_02911366.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171092081|gb|EDT37503.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1001 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 56/239 (23%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I +P+ AI +LEL++ + E + ++ S+ Sbjct: 506 LREAREAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAPLPAEERRRLQTVMSSS 565 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 D L D+ + A R+ Sbjct: 566 DALLRVINDVLDLSKVESNQMVLEAVPFDLRAVLRDVAAIFRPLAAARHLALECRIDPQL 625 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160 + +I+ NL A RG + + ++ G Sbjct: 626 ADGYVGDPTRLRQIVSNLVSNAIKFTERGSVTIEARPTGAVGQAHGVEVVVRDTGIGIAP 685 Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + LA L E L Sbjct: 686 ESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVETRPGEGATFIVSLP 744 >gi|311104394|ref|YP_003977247.1| sensor protein KdpD [Achromobacter xylosoxidans A8] gi|310759083|gb|ADP14532.1| sensor protein KdpD [Achromobacter xylosoxidans A8] Length = 928 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56 A+ ++ S L L + + HD+ +P+ ++ + L + ++ +R Sbjct: 684 AQQALVSMESEKLRNSLLAAVSHDLRTPLTSLVGMTDTLMRQQAALPPGIHDTIRAMRDQ 743 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------- 107 + + + L + + R ++ Sbjct: 744 AQRMHALVVNLLDMARLQNRDTPLRLEWQSIEELVGASLAAMREPLAAHRVAVDSLSQLP 803 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 ++L NL A P G + + + E ++ NG Sbjct: 804 LVECDGVLIERVLCNLLENAAKYTPAGSTLRVHADVHEGELRVAVSDNGPGVPPGAERRI 863 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214 F + G+ ES + + + ++ E L Sbjct: 864 FEKFTRGDRESATPGVGLGLAVCEAIIAAHHGKIWVEHAPGQESGAQFVFTLP 916 >gi|308188532|ref|YP_003932663.1| sensor protein KdpD [Pantoea vagans C9-1] gi|308059042|gb|ADO11214.1| sensor protein KdpD [Pantoea vagans C9-1] Length = 892 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 18/227 (7%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56 + L L S + HD+ +P+ + E+L ++ + + Sbjct: 653 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 712 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 L R+ G + + VQ+ + + + Sbjct: 713 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGHEVQLDLPDDIVLIKG 772 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + ++ NL + I + ++ +G + F + Sbjct: 773 DSTLLERVFTNLIENSLKYAGNSAPRGIRAWRAATRLEIAVWDSGPGVAEDDLTRIFDKF 832 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ ES + + + + ++ E + L Sbjct: 833 WRGDKESAVPGVGLGLAICKTIIESHGGQIWAENRPEGGAAFRLSLP 879 >gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 551 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 70/241 (29%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLI 53 +++ + ++++ A L S + H++ +P+ AI E+L E + + ++ + Sbjct: 170 LSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVYGSLNPKQLKSV 229 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQ 101 S L + + + L + V + + Sbjct: 230 CTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMVRPQAQKQNITLS 289 Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + +++ + ++L NL A P+GG V++ + + G Sbjct: 290 HHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQATADTEQVQVRVTDTGIGI 349 Query: 159 RFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + V L H + + E L Sbjct: 350 ATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVESEVGSGSTFIVTL 409 Query: 214 E 214 Sbjct: 410 P 410 >gi|91774571|ref|YP_544327.1| signal transduction histidine kinase [Methylobacillus flagellatus KT] gi|91708558|gb|ABE48486.1| signal transduction histidine kinase [Methylobacillus flagellatus KT] Length = 531 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 17/228 (7%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLS 56 + + L AL L + I H+I +P+ AI ++ +LL E ++Q+I + Sbjct: 302 SQLQTQAQQLKLAALGRLTANIAHEIRNPLSAISHATQLLQEDESHDPASQRMLQIISDN 361 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEK 108 +K + + I L D + D +++ Sbjct: 362 VQRMEQMIKDVLELNRRDRTRQQEIRLTDFLREFHDQFYQVEKIPPQGFVLDTDVLEPTI 421 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQI 167 + R ++L NL + S+ + +GN + Sbjct: 422 MFDHRHLHQVLWNLCRNGWRHSRQRNGSLTLSLRSEARKWLIEVHDDGNGIPDSAL-AHL 480 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + Y L N + + +EK Sbjct: 481 FEPFFTTESTGTGLGLYIARELCEANGATIE-HAAVEQGCSFVIHIEK 527 >gi|6174691|dbj|BAA85983.1| NtrB [Shewanella violacea] Length = 347 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 22/230 (9%) Query: 5 ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 L + A L + H+I +P+G + + +LL + E+ + + A Sbjct: 116 QQLTLDAQQQAAQYLVRNLAHEIKNPLGGLRGAAQLLSRELHDPELHEFTDMIIEQADRL 175 Query: 64 LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + +++ + + + + + D++ + +I Sbjct: 176 RNLVDRLLGPQKPTQHTQQNIHEVIQKVLKLVTMALPENIQFKQDYDPSIPDINMDPEQI 235 Query: 119 LLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + ++TI Q K S+ NG PE Sbjct: 236 QQAVLNIVQNAVQALEGVGGNIIIKTRAQHQITIGTQRHKIVIALSVIDNGPGI-KPELM 294 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + A + R+ + + LL Sbjct: 295 DTLFYPMVTGRDQGSGLGLSISHNFARLHGGRIDCQSTPGE-TEFTILLP 343 >gi|119716160|ref|YP_923125.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] gi|119536821|gb|ABL81438.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] Length = 920 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 68/231 (29%), Gaps = 24/231 (10%) Query: 8 NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA 60 L +D+ + S + H++ +P+ +I ELL++ + +++ I + Sbjct: 687 RLRQLDVAKSEFVSTVSHELRTPVASIVGYTELLEDGTVVDPAPEQRPMLESIARNGQRL 746 Query: 61 IIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I+ + A+ + + + E + D + + + + Sbjct: 747 ILLCDDLLTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQLTGRDLELSMLAEPAPVLV 806 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +R ++ L A GG++ V +E S+ G E+ Sbjct: 807 LGDRVQLERALINLLGNAVKFTEDGGRIECRVGRQDDEAWLSISDTGLGIPVEEQNGLFQ 866 Query: 169 DGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + R+ + + L Sbjct: 867 RFFRSSTAQAHAIQGTGLGLSIVAATVAAHGGRIDVDSAHLQGTTFTVRLP 917 >gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 706 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 59/241 (24%), Gaps = 31/241 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + S + H++ +P+ I +LL E + + + + SA Sbjct: 452 AKERAESAARAK--TTFLSTMSHELRTPMHGILGMTQLLLESDLNERQRRQLDTVKRSAD 509 Query: 62 IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWT 105 + + G D ++I D + V Sbjct: 510 TLLAILADILDYTRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAEKKGLGFVLDSSRPAP 569 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI------FSLKINGNLAR 159 G I +R +IL L A G + D++ + G Sbjct: 570 GFVIVDARRLQQILDKLTANAVKFTHEGEIRLATWLDTETPAGGSGRLAICVTDTGIGI- 628 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I + + LA L E D + + Sbjct: 629 PDALHESIFEPFVQADGSHTRRYGGTGLGLAIARRLAEALGGTLSVESEPDQGSRFTLSI 688 Query: 214 E 214 Sbjct: 689 P 689 >gi|254418240|ref|ZP_05031964.1| PAS fold family [Brevundimonas sp. BAL3] gi|196184417|gb|EDX79393.1| PAS fold family [Brevundimonas sp. BAL3] Length = 486 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 63/242 (26%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAI----HNSLELLDEVGIED 47 + L + L A+ + + + H++ P+ AI S LL + Sbjct: 237 RRAQERRLQELQSELVHVSRLTAMGEMATALAHELNQPLSAIASYTMGSTTLLASPKPDL 296 Query: 48 EVM--------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDK 98 + + + +F+ D + + + + Sbjct: 297 DKVRNALSAAGDQALRAGDIIKRLREFVAKGETEHVLADPVKLMEEASALALVGAKDQGM 356 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD------SKNENIFSLK 152 RV +++ + ++ ++ + ++ G + F++ Sbjct: 357 RVDLAFDRNTGPVIVDKVQVQQVALNLIRNAIDAMGDAPKRALHIAVAEDDGDMVRFTVS 416 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ V + D I + + R+ E + Sbjct: 417 DTGPGVPET-VLERLFQPFVTTKPDGMGIGLSICRGIIMAHGGRIWAENPPEGGARFIFT 475 Query: 213 LE 214 L Sbjct: 476 LP 477 >gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 584 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 59/227 (25%), Gaps = 25/227 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLK 65 + + + H++ +P+ I E L + + + +I+ + ++ Sbjct: 356 EKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPQRAERFLLIIQNHADRLSGLVR 415 Query: 66 FMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSR 113 + + + + I Q + + V Sbjct: 416 DLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRG 475 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 ++L+NL A G V + + S++ +G + ++ + Sbjct: 476 RLEQVLINLLDNAIKYSETGKSVGVETAREGDLVRVSVRDSGIGIPEKDLP-RLFERFYR 534 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L + V S L Sbjct: 535 VDEARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLP 581 >gi|167629664|ref|YP_001680163.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592404|gb|ABZ84152.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 328 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 57/234 (24%), Gaps = 36/234 (15%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L S I H++ +P+ AI L + + + E + +I + ++ + Sbjct: 88 QLVSDISHELGTPMTAIQGYLRAMLDGIVAPDQENLTMIYEKVLLVNQLVEDLFDLSKLE 147 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------------WTGEKIDLSRERAK 117 S + + + + Sbjct: 148 FGQPSFDLKSVKPHLFASDLIRKYGADIRRRGYRFESTLDLPFPEADEFVLSVDMMRIEQ 207 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNE--------------NIFSLKINGNLARF--- 160 ++ NL A P GG + + +++ S+ +G Sbjct: 208 VMNNLIANALKYTPPGGTIRLCFCCERSDGKALPGGQAPPTAVFTVSVVDDGPGIDEAAL 267 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + + + + R+ E L Sbjct: 268 PHVFDRFYRAERSRSTEGAGLGLAIARQIVIGHGGRIGVESQPGKGSTFYFTLP 321 >gi|85703111|ref|ZP_01034215.1| phosphate regulon sensor histidine kinase, putative [Roseovarius sp. 217] gi|85672039|gb|EAQ26896.1| phosphate regulon sensor histidine kinase, putative [Roseovarius sp. 217] Length = 348 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 18/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 +++ + + + + H++ +P+ A+ +E L + D + +++ + Sbjct: 102 EDLTEREHAAQMRRDFVANVSHELRTPLTALMGFIETLQGPARHDQAAIDRFLGIMQSEA 161 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108 ++ + + + Sbjct: 162 ARMERLVRDLLSLSRVESEERVRPRDEVNLGQVIGSVLHALRPLARDRACDISFDPPEGM 221 Query: 109 IDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNE-------NIFSLKINGNLAR 159 + + ++ NL A G +TI+++ + + + ++ G Sbjct: 222 VVRGNDDQLQQVFTNLIENAIKYGGTGNHITITLERTPRDATLRAPAIVARVRDQGPGID 281 Query: 160 FPEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL S +L Sbjct: 282 PLHIPRLTERFYRVDTHRSREMGGTGLGLAIVKHIVNRHRGRLRISSTPGEGAEFSVILP 341 >gi|115359896|ref|YP_777034.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285184|gb|ABI90700.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 1022 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 63/245 (25%), Gaps = 33/245 (13%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + D + L + H+I +P+ I +LELL+ ++ ++ Sbjct: 484 LVHQLEEAVRAADSANAAKSSFLAAT-SHEIRTPLNVILGNLELLERTALDASQQSRVQT 542 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 SA L + ++ + + IE + I + Sbjct: 543 LRASAEGLLAIVSDILDFSKIEAGAMTVESIEFDVIAVIERELAAFAPVARAKGLPLFAD 602 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155 + S A+++ NL A G V E ++ G Sbjct: 603 IDASAAQRMRGDPTRLAQVVGNLLGNAIKFTSEGRIVARVAVGHDVRGRPELAIGIEDTG 662 Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + ++ + + L + + Sbjct: 663 IGIDPAQ-HARLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISVHSAPGVGSLF 721 Query: 210 SALLE 214 + L Sbjct: 722 TVRLP 726 >gi|329923220|ref|ZP_08278706.1| sporulation kinase A [Paenibacillus sp. HGF5] gi|328941546|gb|EGG37836.1| sporulation kinase A [Paenibacillus sp. HGF5] Length = 357 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 69/224 (30%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMS 59 + + S L L + I H+I +P+ +I ++L+ DE +I Sbjct: 131 QEEKRLIQSDKLSMAGQLAAGIAHEIRNPMTSIKGFVQLIRSGAGRKDEYFDIISSEIER 190 Query: 60 AI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDL 111 L + D L + ++ + ++ Sbjct: 191 IELIVSELLFLAKPQSVKFERADIRQLLDQVITLLNTQAIIHNVEIITDFGEQEANVDGD 250 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ +N A S+P GGK+TI + S NG +++ + Sbjct: 251 VNHLKQVFINFIKNAVESMPDGGKLTIRLERGSDQTVAIHFTDNGCGIPES-ILSRLGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + F + +++ ++ ++ +L Sbjct: 310 FFTTKEKGNGLGFMISKKMIEDHRGQVHVTSKLQEGTTITVMLP 353 >gi|328949556|ref|YP_004366891.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] gi|328449880|gb|AEB10781.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] Length = 373 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 24/227 (10%) Query: 11 SMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAII 62 + L A L + I H++ +P+ + + LE L + + E ++ + Sbjct: 136 ADRLAAEEAQTRRLVADIAHELRTPLTVLKSELEALADGLLSPDPETLERLVEEVDLLAR 195 Query: 63 RLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLS 112 + +R V + + + A + V + Sbjct: 196 LVGDLRLLSLAEAGGLELAREDVPLRDLVRRVAEGFAPRAAAKGVRLVVTAAPVTVHADP 255 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD 169 ++LLNL A P GG + + V + G P F + Sbjct: 256 GRLRQVLLNLLDNALRHTPAGGCIAVGVHAEGAAV-LEVADTGPGIPEAHRPHVFERFYR 314 Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V L + R+ + V L Sbjct: 315 PDPARSRAFGGSGIGLAIVKALVEAHGGRVEAMNRPEGGAVFRVRLP 361 >gi|319653175|ref|ZP_08007277.1| hypothetical protein HMPREF1013_03892 [Bacillus sp. 2_A_57_CT2] gi|317395096|gb|EFV75832.1| hypothetical protein HMPREF1013_03892 [Bacillus sp. 2_A_57_CT2] Length = 358 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 19/215 (8%), Positives = 53/215 (24%), Gaps = 17/215 (7%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L I H+I +P+ + L+LL +++ ++ A + A Sbjct: 142 AGQLA-GIAHEIRNPLTTVKGFLQLLKPYLLEIGKEQYAEIAIEEINRANDIIYEFLNAS 200 Query: 72 GYTGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + + I + + + + V + +I L + Sbjct: 201 KPPQNKRTEIEVNRLVKEMKIFFESEAHIRNINISVCLCPNNPIFYGDVKQIKQVLINII 260 Query: 127 HASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 ++ + + +++ NG ++ + Sbjct: 261 RNAMEACESIPAPEGKIDLKAKALNQKVSITIQDNGLGMSEKTIS-KLFVPFYTTKEKGT 319 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + E+ ++ V Sbjct: 320 GIGLSICQKIIEEHDGKINVHSKMSQGTVFEIEFP 354 >gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1142 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 MA++ N + + +A++ H++ +P+ A+ ++L + I+++ + +I + Sbjct: 754 MAESQAANRAKDEFLAVM----SHELRTPLTAVLGWTQMLRTRRNDPAIQEKGLDVIERN 809 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----W 104 + S ++ + + +VD + +V+ V Sbjct: 810 ARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVMEAGVG 869 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161 G ++ NL + A P GG+V + V+ E +K +G R P Sbjct: 870 GGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALP 929 Query: 162 EKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 F + G+ + V L + + E H + L Sbjct: 930 HLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 985 >gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1263 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 67/240 (27%), Gaps = 31/240 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H+I +P+ A+ +LL + + +E +R S+ Sbjct: 532 ARREAERASRAK--SEFLANMSHEIRTPMNAVIGLSQLLAQTELNEEQRDQVRKIHQSSR 589 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + V + ++V + + + Sbjct: 590 MLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVHAGGLELLYDIPPHLP 649 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIFSLKINGNLAR 159 + S ++IL+NL A RG +V V + + F ++ G Sbjct: 650 RTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVANDQATLRFHVRDTGIGM- 708 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ ++ + L + L E S L Sbjct: 709 SKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEVESAPGKGSTFSFTL 768 >gi|154490985|ref|ZP_02030926.1| hypothetical protein PARMER_00902 [Parabacteroides merdae ATCC 43184] gi|154088733|gb|EDN87777.1| hypothetical protein PARMER_00902 [Parabacteroides merdae ATCC 43184] Length = 576 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 24/234 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE + L Sbjct: 342 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLKLLEDKRIGDMNDEQIALAGS 399 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 S+ L+ +++ G + + ++I+ I + ++V Sbjct: 400 IRESSDRLLEITGELLKMTQVEAGKLQLNPKITKPIELIDYAIKANRVQAERFNCHIEVE 459 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + L + KI L A P G++ I + ++ G Sbjct: 460 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIVIGAHQVDKKVEIFVQDFGKGIDP 519 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + + + + Sbjct: 520 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTIRVDSEVGKGSTFVIT 573 >gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 687 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 58/236 (24%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H++ +P+ AI E+L E + LI + Sbjct: 192 AKQAAEAANQAK--SSFLANMSHELRTPLNAIIGYSEMLQEEMEDLGQDDLIPDLAKIHS 249 Query: 62 I-------RLKFMRLAFGYTGSVDS--------LIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ G +D + + + + V G Sbjct: 250 AGRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQKNGNTLVVDGAG 309 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKF 164 E + + K+ LF + + TI+ + F++ G E Sbjct: 310 EIGAMEADLTKVRQTLFNLLSNASKFTSDGTITLSTRRQGEWIEFAVADTGIGMAPAEL- 368 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + L Sbjct: 369 DRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGRGTTFTVRLP 424 >gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 968 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 64/234 (27%), Gaps = 24/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S + + + H+I +P+ AI ELL E + E ++ + + + + Sbjct: 585 AKERAEAASQAK--SEFLAMMSHEIRTPMNAILGITELLQEQPSKKEQLEFLTVQAKAGQ 642 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 T D L + ++E + + Sbjct: 643 ALLTLINDILELSRLEAGREQLQTAPFDLYELLRSVSTLLEPSAKHKGLSVHLEIAEGLS 702 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 I R ++L+NL RG + IS Q N +K +G Sbjct: 703 PNWIGDERRLRQVLINLVGNGIKFTNRGS-IWISAQPMANGLEIRVKDSGAGINPRHHDK 761 Query: 164 -FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + L + E D + L Sbjct: 762 IFERFHQVDSTATRKHGGTGLGLAITKKLMDLMGGEIRMESQPDQGSCFTLALP 815 >gi|258593570|emb|CBE69911.1| Periplasmic sensor signal transduction histidine kinase precursor [NC10 bacterium 'Dutch sediment'] Length = 493 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 72/247 (29%), Gaps = 36/247 (14%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLI 53 K + L + L ++ L S I H+I +P+ I+ S++ L + G +E L+ Sbjct: 243 KELEQRLHQAERLSSIGQLASGIAHEIRNPLNFINLSIDHLQSRFSPADPGSREEFTYLV 302 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWT 105 + Y + ++ V + Sbjct: 303 SWVKSEIHRLNTMITNFLTYGKPLKLQPRPSDLTSLLHDVVKMVSGKAEEQGIEIDCGSL 362 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK---------------NEN 147 LS + +I A ++P+GGK+ I+ + Sbjct: 363 EALPILSVDGEQIRTCFVNVLVNALQAMPQGGKLAIATRLVNETDSSGGPSPLAASRRWI 422 Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 S + G+ + ++ + + + + E+ + E I + Sbjct: 423 EVSFQDTGHGIATADLP-RVFEPYFTTKEVGIGLGLALTKKIVEEHGGTIALESIPNRGT 481 Query: 208 VLSALLE 214 +S L Sbjct: 482 TVSIRLP 488 >gi|260778718|ref|ZP_05887610.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604882|gb|EEX31177.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 675 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 62/235 (26%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + + + + L AL L + I H+I +P I ++EL+ + E + I Sbjct: 430 LNQTRDKLVINEKLAALGELTAGIAHEINNPTAVILGNVELMQFELGNDSQRVQEEIDAI 489 Query: 54 RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + AV + Sbjct: 490 HAQIDRVRNITRSLLQYSRQGGVQDEITWQHINPIIEESITLVKTGSKKRAVQFITDLKA 549 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL+NL M ++ D + I + G Sbjct: 550 KNSVEVNRHQLLQILVNLEMNGIHAMSGEGTLTISSEDWIENDQELGAIIHVADEGCGI- 608 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + + + L E S L Sbjct: 609 KPENLARIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGIGSKFSIYLP 663 >gi|320011789|gb|ADW06639.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces flavogriseus ATCC 33331] Length = 384 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 51/221 (23%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 156 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 215 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 VD + Q R V L + ++ Sbjct: 216 ISRIDSGRLELRRQPVDISAAVERHVQAHTANGQSPDRFLVRTRQPLPALWADPDKVDQV 275 Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 L NL A ++ ++ ++ G Sbjct: 276 LGNLLENAVRHGEGTVTIEIAPAPAPAKNDESGTAVTVSDEGPGIPEESMGRVFTRFWRG 335 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + + +L Sbjct: 336 SKRGGTGLGLYIVKGIVEAHGGTITVDRAPGGGAEFRFILP 376 >gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 533 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + +++ N A G + +++ F++ G + Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 S + + + E Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGAESEIGVGSRFWFT 526 >gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 533 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + +++ N A G + +++ F++ G + Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 S + + + E Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGAESEIGVGSRFWFT 526 >gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 664 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + + + H++ +P+ I ELL +E + + +I Sbjct: 268 LESERTARNEAESMARFKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPTYKGLSVI 327 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M + L E E + + Sbjct: 328 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVHEALTTQELAAEGKDQILEVHV 387 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ ++++ + S++ +G+ Sbjct: 388 PDTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSVRDSGDGIAAE 447 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 448 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 506 >gi|315646641|ref|ZP_07899758.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315277967|gb|EFU41288.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 484 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 60/212 (28%), Gaps = 18/212 (8%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72 S I H++ +P+ +I E LD + MQ+I + I ++ + Sbjct: 250 SSISHELRTPLTSIKGWSETLDSGGYDPEETKIGMQIITKETDRLIGLVEELLDFSKLQQ 309 Query: 73 --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + L + + + ++ + ++ LN+ Sbjct: 310 NEMKLVKGIVNLRELLQEIMLNLWTKAEKKGIQIKLVSDEKPIIYGDANRLKQVFLNIVD 369 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182 A G + +S + I ++K +G E ++ D + + Sbjct: 370 NAVKFSHENGAINLSFTIEEKFVIVTVKDHGIGI-SDEHLRRVKDRFFQVNPLNGGTGLG 428 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L + + E + L Sbjct: 429 LAITQQLIELHGGAMEMESELGQGTSVIVKLP 460 >gi|167769066|ref|ZP_02441119.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM 17241] gi|167668706|gb|EDS12836.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM 17241] Length = 877 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + + L A L I HD+ +P+ AI + L D E + Sbjct: 636 KEAAAVLAKNEQLRANLLRSISHDLRTPLTAISGNASNLLSNGKLFDAQTKEQMYTDIYD 695 Query: 55 LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + T +D +I + + Sbjct: 696 DAMWLINLVENLLSVSRLEEGRMNLHMSTELMDEVIAEALRHINRKSADYHLIVREPDEY 755 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 R ++L+N+ A P G + I + + + S+ NG K Sbjct: 756 ILVQIDVRLIVQVLINIIDNAIKYTPVGSDIRIEWKKQGDFVLVSIADNGPGISAEAKPH 815 Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + S + + + + + H + + + Sbjct: 816 IFEMFYSASAKIADSRRSMGLGLALCKSIVNAHGGEISVADQIPHGTIFTFSIP 869 >gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus] Length = 1177 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 28/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 A L + H+I +P+ + LELL + + E L+ +S SA L+ + ++ Sbjct: 523 AFLA-NMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFSK 581 Query: 76 SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119 + + E + D + + + I +IL Sbjct: 582 LEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQIL 641 Query: 120 LNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNV--- 172 NL + RG +Q + F ++ G P+ ++ Sbjct: 642 TNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRDTGIGI-APDVQARLFQPFTQAD 700 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E L Sbjct: 701 GSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLP 745 >gi|313149369|ref|ZP_07811562.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138136|gb|EFR55496.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 398 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 69/230 (30%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 AK N L + + H+I +P+ AI ELL E + + ++++ +S Sbjct: 21 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAATEEKEKQKYLEILHTNSE 78 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105 + + VD + L D+EQ+ I D VQ+ + Sbjct: 79 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFHMKIGYDSPVQIITEAGLPS 138 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A G +N F + G+ + Sbjct: 139 CMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPC-ENGLRFYVTDTGSGISADKLGG 197 Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++S + + + ++ + E + L Sbjct: 198 VFDRFVRLQSDKNGTGLGLSICKTIVNKLGGEIGAESVVGQGSTFWFTLP 247 >gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 557 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 69/230 (30%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 AK N L + + H+I +P+ AI ELL E + + ++++ +S Sbjct: 180 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAATEEKEKQKYLEILHTNSE 237 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105 + + VD + L D+EQ+ I D VQ+ + Sbjct: 238 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFHMKIGYDSPVQIITEAGLPS 297 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A G +N F + G+ + Sbjct: 298 CMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPC-ENGLRFYVTDTGSGISADKLGG 356 Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++S + + + ++ + E + L Sbjct: 357 VFDRFVRLQSDKNGTGLGLSICKTIVNKLGGEIGAESVVGQGSTFWFTLP 406 >gi|229012457|ref|ZP_04169632.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048] gi|228748816|gb|EEL98666.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048] Length = 448 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +A N S+ + S + H+ SP+ +I + L +++ Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105 I S K + L Q + ++ +K + V + Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 330 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 I + + ++ N+F + GG + V++ ++ + S+ NG E Sbjct: 331 VPDISIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGM-EQE 389 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I D ++ + V + ++ + + L K Sbjct: 390 EMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHQGNVSVYSTKGEGTTVRVELPK 448 >gi|158521787|ref|YP_001529657.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510613|gb|ABW67580.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 519 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 62/241 (25%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 + + L ++ L + I H+I +P+G + LE+L++ + ++ Sbjct: 268 QNRQNELIRAEKLASVGRLAAGIAHEIGNPVGIVLGYLEMLNDPALSPADRQDYLKRCEA 327 Query: 56 SSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW---TGE 107 L F R A V + + + D + Sbjct: 328 EINRINTTIRELLDFSRPAGEKPCPVALSRVIEETLRMLNVQPGMKDITFSCDFAAANDT 387 Query: 108 KIDLSRERAKILLNLFMVAHAS------------LPRGGKVTISVQDSKNENIFSLKING 155 + ++ +NL + A + + S+ NG Sbjct: 388 VMAPPDRLRQVFVNLVINAADALASVSDQQEGRITITTKNHCPDAGNGPEMVEASVIDNG 447 Query: 156 NLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P+ + D + + ++ + + VL L Sbjct: 448 PGIAAPDL-DLVFDPFYTTKEPGKGTGLGLSVCFMIIESLGGTIRIDSNRGQGTVLRIEL 506 Query: 214 E 214 Sbjct: 507 P 507 >gi|332703196|ref|ZP_08423284.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553345|gb|EGJ50389.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 585 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 24/228 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSS 57 + + ++ L + + H+I +P+ I+ L+ + + M I S Sbjct: 341 HADKMASIGRLAAGVAHEINNPLAIINEKAGLIKDLFTYRQEYQSDPRLMKHMDSIIASV 400 Query: 58 MSA----IIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112 L F R V + ++ + ++ V++ D+ Sbjct: 401 QRCGTITKRLLSFARHLDVCLQPVGVRKVVEEVLGFLHKEAEYRSIEVKLQGGENLPDVV 460 Query: 113 RER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +R +I LNL A ++ GG + ++ +G + +I Sbjct: 461 SDRGQLQQIFLNLINNAFQAMSDGGHLAIAISPEPNGGLSVAVSDDGCGISETD-QKRIF 519 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L E R+ H + L Sbjct: 520 EPFYTTKASKGGTGLGLSITYSLVQELGGRVDLVSEVGHGTTFTVRLP 567 >gi|310825009|ref|YP_003957367.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398081|gb|ADO75540.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 837 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 75/240 (31%), Gaps = 28/240 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47 K + L S + ++ L + I H++ +P+ + +LE + V Sbjct: 458 RKQMQARLMLSDRMASMGTLSAGIAHELNNPLSYVIANLEFVHATLQPAEFDPARVPEWR 517 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +V+ R + ++ ++ + L + + + + + + Sbjct: 518 QVLDEAREGAERVRQIVRQLKTFSRVEEERQEQVELHRVLDSVAQMATSEVKHRARLVKQ 577 Query: 108 KID------LSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGN 156 + ++ LNL + A ++P G + +D + + ++ G Sbjct: 578 YGPLPAITGNDGKLFQVFLNLVINAAHAIPEGCVEDHEIRLATFEDERGWAVVEVRDTGG 637 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I + + + + L + + E V +L Sbjct: 638 GI-RPENLSRIFEPFFTTKPQGVGTGLGLSICLTLVRAHGGDITVESTVGKGTVFRVMLP 696 >gi|310824308|ref|YP_003956666.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397380|gb|ADO74839.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1212 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 60/243 (24%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + + + + A+ L + + H+I +P+ I ++L + + Sbjct: 818 LQSTRERLVHAEKMAAVGTLAAGVGHEINNPLAFIISNLHYASLEVKHAAQQEPDQERWA 877 Query: 58 -----------------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 F R+ + VD L + + RV Sbjct: 878 EVEQALSEALLGADRVRRIVQDLKTFSRVQPEHPQRVDLHEVLELALSFADAEVRHRARV 937 Query: 101 QVSWTGEK--IDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKI 153 + ++ LNL + A + P + QD K + + ++ Sbjct: 938 VKDYGTVPAVFGDEARMGQVFLNLVINAAQATPEGHADEHEIRITTRQDEKGQAVVAVSD 997 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G PE +I + + + + Sbjct: 998 TGIGI-PPEVLPRIFEPFFTTKPVGVGTGLGLSICHGYVQALGGDIRVHSTLGSGTTFEV 1056 Query: 212 LLE 214 L Sbjct: 1057 TLP 1059 >gi|229016688|ref|ZP_04173621.1| hypothetical protein bcere0030_12590 [Bacillus cereus AH1273] gi|229022900|ref|ZP_04179420.1| hypothetical protein bcere0029_12460 [Bacillus cereus AH1272] gi|228738435|gb|EEL88911.1| hypothetical protein bcere0029_12460 [Bacillus cereus AH1272] gi|228744596|gb|EEL94665.1| hypothetical protein bcere0030_12590 [Bacillus cereus AH1273] Length = 402 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCSEKERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQKLQVEEELLHALSLITPLANLTNVRIHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+F ++P GG + +++ +K G PE+ ++ Sbjct: 295 ERQKLNQCLLNIFKNCIEAMPNGGDLILTLVPDHKHIQLYIKDTGVGM-DPEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVIQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|254412809|ref|ZP_05026582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180544|gb|EDX75535.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 622 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 59/229 (25%), Gaps = 22/229 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57 ++ + ++ A + S HD+ P+ I + +LL D+ + I ++ Sbjct: 396 DLARSNQDLEQFAYVAS---HDLREPLRKIRSYSDLLVKRYRGKLDERADKYIAYITDAT 452 Query: 58 MSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + I + + + + Sbjct: 453 QRMQSLISDLLTYSRVSKPELIPEPTDLGHILKKTLADLSPLIKENKAIITTDSLPQVNA 512 Query: 111 LSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L NL + ++ I+ +++ NG + +I Sbjct: 513 NPTQMAQLLQNLITNGIKFRTQQPPRIHITATREGQFWQIAVQDNGIGM-DTQYCDRIFV 571 Query: 170 GN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ E L Sbjct: 572 IFQRLHYREEYPGTGIGLAVSKKIVERHGGQIWVESELGQGTTFYFTLP 620 >gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1 str. Okra] gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] Length = 569 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + ++ + I + + Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEKIPLLIGNKDKYNQ 463 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G E +I + Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565 >gi|197119322|ref|YP_002139749.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088682|gb|ACH39953.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1004 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 19/233 (8%), Positives = 51/233 (21%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHN---SLEL-LDEVGIEDEVMQLIRLSSM 58 + N+ ++ + +L I HD + + I +L L + + Sbjct: 626 EAQMLNMQKLESLGVLAGGIAHDFNNILTGIVGNISFAQLALPAAHKAGAPLLKAEKACQ 685 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113 A + + + + + V Sbjct: 686 RAAELASQLLTFARGGQPIKKAFSVKPLVGESLSLVLRGTNVKGVIDIADDLCVIEADEG 745 Query: 114 ERAKILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + N+ + A ++P S G Sbjct: 746 QINQAFNNIIINAVHAMPGGGTLTVTGEDAVMEAGNRFGLTQGPYVRLSFSDQGCGIPKA 805 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + + +L + + + L Sbjct: 806 DL-EKIFDPYFTTKTSGTGLGLASTHSIVTRHGGMILVDSAPEKGSTFTIYLP 857 >gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1459 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 61/227 (26%), Gaps = 29/227 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-------SAIIRLKFMR 68 + + I H+I +PI AI LL + ++ + ++ L F + Sbjct: 825 SEFLATISHEIRTPINAIMGMAGLLLDTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSK 884 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKIL 119 + ++ L + + + D +A + V + + +IL Sbjct: 885 IESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQIL 944 Query: 120 LNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-- 171 NL A P+G Q F ++ G PEK ++ Sbjct: 945 ANLLSNAIKFTPQGEVVVTVEAQEQDPQAQVQWVSFQVQDTGIGI-PPEKQDRLFKPFSQ 1003 Query: 172 ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + + Sbjct: 1004 VDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIP 1050 >gi|323706069|ref|ZP_08117638.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534513|gb|EGB24295.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 456 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 69/215 (32%), Gaps = 19/215 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLKFMRLAFGY 73 S + H++ +P+ + +EL+D G +++ + L + I+ + + LA G Sbjct: 241 SNVSHELRTPLSILKGYIELIDRWGKDNKDVLEESIGALKKEEQEMEILIERLLMLARGD 300 Query: 74 TGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 +++ L ++ ++I F + + E ++L + Sbjct: 301 NKTLNINKKLFNVYELIAEIVRDAKVIFNGKNIEIFCDKNLEVYADRNLIKELLRIILDN 360 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--TIDSHD 180 A G + ++ N ++K +G E F + + Sbjct: 361 ALKYTDIDGNIKFYAGEADNNVAVTIKDDGIGIPEEEIPYIFDRFYRVDKARSKETGGMG 420 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + L+ + + + + + K Sbjct: 421 LGLSIAKLIVELHGGSIEVKSKLNEGSEFKITIPK 455 >gi|302341482|ref|YP_003806011.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638095|gb|ADK83417.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 597 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 16/223 (7%), Positives = 58/223 (26%), Gaps = 21/223 (9%) Query: 13 DLVAL--LCSRICHDIISPIGAIH----NSLELL---DEVGIEDEVMQLIRLSSMSAIIR 63 L ++ L + + H+I +P+ I+ +LL D+ D+ ++ + S Sbjct: 344 KLASIGRLAAGVAHEINNPVAIINEKVGLMKDLLAVSDDFAHRDKFLKQAAVIQDSVKRV 403 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEKIDLSRER 115 G+ + +E + + + + + + + ++ Sbjct: 404 SDITHRLLGFARHLPVKYEQIHLEALLREVLGFLGREAQYRNVTIDMDIHDDLTAIEADK 463 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGN 171 ++ + + ++ + ++ +G + Sbjct: 464 GQLQQVFLNIINNAMAAVADGGRIAIAAGLDDARHVAVTVSDDGVGIPPEDLKRIFEPFF 523 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ +L Sbjct: 524 STKGERGTGLGLSITYGIVRKLGGRIEVSSAPGEGTTFKIVLP 566 >gi|322420355|ref|YP_004199578.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126742|gb|ADW14302.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 947 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHN---SLELLDEV-GIEDEVMQLIRLSSM 58 + + ++ + LL I HD + + + ++L + + + +S+ Sbjct: 567 QQEQLKIEKLESLGLLAGGIAHDFNNILTGVMGNISFAQMLLDPSHKSFKPLAEAEKASL 626 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 A + + V +I L D+ + + V+ + + Sbjct: 627 RATELARQLLTFARGGEPVRKIISLQDVVNESVELVLSGSNVKGIIDIPDATHAIDADEG 686 Query: 117 ---KILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++L N+ + A ++P + + + ++ G Sbjct: 687 QLSQVLHNIVINAAQAMPGGGTLTVTARNETLTETNDMSLNPGSYVRLTIADRGCGM-PE 745 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T+I D + + + + + + + + D V + L Sbjct: 746 AVMTKIFDPYFTTKSAGNGLGLASAYSIVTRHGGHIGVDSVLDRGTVFTIHLP 798 >gi|228919504|ref|ZP_04082868.1| hypothetical protein bthur0011_5290 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840147|gb|EEM85424.1| hypothetical protein bthur0011_5290 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 463 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 18/218 (8%), Positives = 63/218 (28%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + E + + I ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAKKVNAIYKERYIKVSFSCPPTLLVNLDEQRFEQVII 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV +++ G + Sbjct: 356 NILNNAYRHSKEHSHINISVTKEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + + + +H L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNISVTSEVNHGSCFIISL 453 >gi|229195757|ref|ZP_04322518.1| hypothetical protein bcere0001_13220 [Bacillus cereus m1293] gi|228587717|gb|EEK45774.1| hypothetical protein bcere0001_13220 [Bacillus cereus m1293] Length = 423 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------I 109 + + + + + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISINYNFSTELDNILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum Bf] gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum Bf] gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 569 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + ++ + I + + Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAENKNIKINIVGEKVPLLIGNKDKYNQ 463 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G E +I + Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565 >gi|189425347|ref|YP_001952524.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421606|gb|ACD96004.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 678 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 73/264 (27%), Gaps = 51/264 (19%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------------- 42 + L + + LL + + HDI +PIG + N+LE L Sbjct: 408 LTSRQAIILHQDKMASIGLLAAGVAHDINNPIGFVTNNLEELRIYLTRLQAFIEEQQAII 467 Query: 43 ----------------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + E ++ S F R+ Sbjct: 468 QASAPPEELKKLHEDWNQLGIEYILDDFGALIAESLEGAGRVSDIVKNLRNFSRVDDFAF 527 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPR 132 D L ++ + + +V + + ++ + +NL + A ++ + Sbjct: 528 KLADINECLESSIKITQHELRHKAQVHRQFGEIPKIFCCPQQLNQAFMNLLVNAAHAIDK 587 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190 G+VT+ + S+ G E +I + + + V + Sbjct: 588 HGEVTLKSWSDSDGVHISIADTGCGI-PDELLPKIFEPFFTTKEAGKGTGLGLSIVADII 646 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + L Sbjct: 647 KLHQGEINVQSRPGQGTTFTITLP 670 >gi|222053640|ref|YP_002536002.1| histidine kinase [Geobacter sp. FRC-32] gi|221562929|gb|ACM18901.1| histidine kinase [Geobacter sp. FRC-32] Length = 482 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 2 AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52 +N+ L + L V L S I H+I +P+ I +++ L E+ + Sbjct: 237 RENLEKRLYEAEHLSKVGQLASGIAHEIRNPLNYISLAIDHLKSELLPTCPERSKELEAI 296 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSW 104 + Y + + + RV + Sbjct: 297 TDNIKEEVRKANYMVLNFMNYGRPLKLRTSEVRYADLIGKALPLLQDKLDEQRIRVAMDI 356 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLAR 159 + + + + LF A ++P GG +T + + I + G Sbjct: 357 PADLPAMQVDAELMRNCLFNFITNAAQAMPEGGTITLGAAFAPEEKRFILTFADQGAGIA 416 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + E+ L + +L Sbjct: 417 AGDIG-KIFQPYFTTKEAGIGLGLAITERIVREHGGELRVNSTVGSGTTFTMVLP 470 >gi|89054779|ref|YP_510230.1| histidine kinase [Jannaschia sp. CCS1] gi|88864328|gb|ABD55205.1| histidine kinase [Jannaschia sp. CCS1] Length = 346 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 61/234 (26%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64 + ++ + + H++ +P+ ++ +E L + +D + ++ + + Sbjct: 111 ETEEMRRDFVANVSHELRTPLTSVMGFIETLRGPARNDPAAQDRFLGIMEAEAGRMNRLI 170 Query: 65 KFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + R +V + + +D + + Sbjct: 171 SDLLSLSKVEAAERKRPTEQVDLAVLLEEVIAALRPRADDAGNRLELIHDDAPALVRGDH 230 Query: 113 RERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164 + ++ LNL A R + + + + G Sbjct: 231 DQLMQVFLNLAENALKYGGPGQPVTLRLSRGQGGGINGRAMIRVDVTDQGPGIDSQHLPR 290 Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL H S L Sbjct: 291 LTERFYRVDAHRSREMGGTGLGLAIVKHIVNRHRGRLKITSQQGHGSTFSVQLP 344 >gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] Length = 1177 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 28/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 A L + H+I +P+ + LELL + + E L+ +S SA L+ + ++ Sbjct: 523 AFLA-NMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFSK 581 Query: 76 SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119 + + E + D + + + I +IL Sbjct: 582 LEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQIL 641 Query: 120 LNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNV--- 172 NL + RG +Q + F ++ G P+ ++ Sbjct: 642 TNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRDTGIGI-APDVQARLFQPFTQAD 700 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E L Sbjct: 701 GSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLP 745 >gi|99080247|ref|YP_612401.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040] gi|99036527|gb|ABF63139.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040] Length = 658 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + + S L ++ + + + H+I +P+ I +++++ + LI Sbjct: 414 LEETFRQLVMSEKLASIGEITAGVAHEINNPVAVIQGNVDVMRMTLGDAAEPVRTELDLI 473 Query: 54 RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104 M + + + VD + D +++ I+ + Q Sbjct: 474 DNQVMRIGAIVGKLLQFARPSEFGTFAEHVDVAAVVRDCLVLVDHVISKQEVRVLTQFDA 533 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160 E ++++N+ + A ++ G + I V+D++ + G Sbjct: 534 APHVRIDPGELQQVVINIIINASQAMEGKGTLAISVAGEVRDAQTGVALRIADTGPGIPM 593 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L R+ L Sbjct: 594 ERIDHIFDPFFTTKQGEGTGLGLSISQTLIQRAGGRITVRNRRARGAEFLIWLP 647 >gi|254415487|ref|ZP_05029247.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177668|gb|EDX72672.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 512 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 60/232 (25%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K + +L + + H+ +P+ I +S ELL+ G + + + Sbjct: 277 RKALAKEKELSELKSRFVTMTSHEFRTPLTTILSSAELLEHYGHKWTPDKKLTHIHRIQG 336 Query: 62 IRLK-----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++L V+ GL + Q+ Sbjct: 337 TVKHLVQVLEDVTLIGKAEAGKLQLQPVSLDLVEFCHGLIEELQLSLGQHHSLVFTHQCP 396 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + IL NL A P G VT+++ + IF +K G + Sbjct: 397 NLNVCMDEKLLRHILTNLISNAIKYSPNCGIVTLNLVCQDSSAIFQIKDQGIGIPLADQE 456 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F I + V + + + L Sbjct: 457 KLFEAFHRAQNVGNISGTGLGLAIVKRAVDLQGGEITVNSQVGEGTMFTVTL 508 >gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] Length = 1065 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 ++ L + + +L + + H+I +P+ I E+L + DE + + + S+ Sbjct: 402 KEDKLIALQANEAKSLFLANMSHEIRTPLNGIVGFTEILRSTDLNDEQREFLSIIDKSSE 461 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105 L + + + I + ++ + + + + Sbjct: 462 NLLSIINNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNIDLNFYMDPTIN 521 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLAR 159 + + +IL+NL A D FS++ NG Sbjct: 522 PKLKGDPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIKFSVQDNGIGM- 580 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ +I D V + +L E D + Sbjct: 581 TQDQQERIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDQGTTFFFTI 640 Query: 214 E 214 Sbjct: 641 P 641 >gi|53802741|ref|YP_115486.1| sensor histidine kinase [Methylococcus capsulatus str. Bath] gi|53756502|gb|AAU90793.1| sensor histidine kinase [Methylococcus capsulatus str. Bath] Length = 591 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 74/228 (32%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSS 57 + ++ + + L + + + H++ +P+G +H S ++L + E ++L R Sbjct: 358 LQQSRQQVIHAAKLAMVGEMAAIMAHEVRTPLGILHTSAQMLQREPLLSAEGLELTRFML 417 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKI 109 + + + + D+ ++ + R+ S E Sbjct: 418 DESARLERLISTLLECARPRPPRMRSCDVHAIVRRVADLLATQARKKNIRLGCSLKAENS 477 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ LNL M A P GG+V + + + +G + + Sbjct: 478 TTACDEELLMQVFLNLVMNAIQITPSGGRVEVRSSSDREALSVEVDDDGPGIPEQNRP-K 536 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + R++ E + L Sbjct: 537 VFDPFFTTREGGIGLGLTVTRQIVDAHHGRIVAEASEWGGARFKVSLP 584 >gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 919 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 56/238 (23%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFI-----AVDKRVQVSWT 105 + + Y D L D + + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L+NL A G + ++S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|30263588|ref|NP_845965.1| sporulation kinase A [Bacillus anthracis str. Ames] gi|47528986|ref|YP_020335.1| sporulation kinase A [Bacillus anthracis str. 'Ames Ancestor'] gi|49186436|ref|YP_029688.1| sporulation kinase A [Bacillus anthracis str. Sterne] gi|65320913|ref|ZP_00393872.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165871086|ref|ZP_02215737.1| sporulation kinase A [Bacillus anthracis str. A0488] gi|167641500|ref|ZP_02399749.1| sporulation kinase A [Bacillus anthracis str. A0193] gi|170689539|ref|ZP_02880726.1| sporulation kinase A [Bacillus anthracis str. A0465] gi|170709172|ref|ZP_02899597.1| sporulation kinase A [Bacillus anthracis str. A0389] gi|177652421|ref|ZP_02934888.1| sporulation kinase A [Bacillus anthracis str. A0174] gi|190564914|ref|ZP_03017835.1| sporulation kinase A [Bacillus anthracis Tsiankovskii-I] gi|227813528|ref|YP_002813537.1| sporulation kinase A [Bacillus anthracis str. CDC 684] gi|229602000|ref|YP_002867831.1| sporulation kinase A [Bacillus anthracis str. A0248] gi|254686206|ref|ZP_05150065.1| sporulation kinase A [Bacillus anthracis str. CNEVA-9066] gi|254726028|ref|ZP_05187810.1| sporulation kinase A [Bacillus anthracis str. A1055] gi|254738679|ref|ZP_05196382.1| sporulation kinase A [Bacillus anthracis str. Western North America USA6153] gi|254752997|ref|ZP_05205033.1| sporulation kinase A [Bacillus anthracis str. Vollum] gi|254759268|ref|ZP_05211294.1| sporulation kinase A [Bacillus anthracis str. Australia 94] gi|30258223|gb|AAP27451.1| sporulation kinase A [Bacillus anthracis str. Ames] gi|47504134|gb|AAT32810.1| sporulation kinase A [Bacillus anthracis str. 'Ames Ancestor'] gi|49180363|gb|AAT55739.1| sporulation kinase A [Bacillus anthracis str. Sterne] gi|164713297|gb|EDR18823.1| sporulation kinase A [Bacillus anthracis str. A0488] gi|167510582|gb|EDR85979.1| sporulation kinase A [Bacillus anthracis str. A0193] gi|170125927|gb|EDS94829.1| sporulation kinase A [Bacillus anthracis str. A0389] gi|170666496|gb|EDT17272.1| sporulation kinase A [Bacillus anthracis str. A0465] gi|172082095|gb|EDT67162.1| sporulation kinase A [Bacillus anthracis str. A0174] gi|190564231|gb|EDV18195.1| sporulation kinase A [Bacillus anthracis Tsiankovskii-I] gi|227005630|gb|ACP15373.1| sporulation kinase A [Bacillus anthracis str. CDC 684] gi|229266408|gb|ACQ48045.1| sporulation kinase A [Bacillus anthracis str. A0248] Length = 510 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 380 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 +A + ++ + L + H++ +P+ AI +E L + E Q I Sbjct: 137 LALSFNQMADKLEKTETMRRQLIGDVAHELRTPLAAIKGYIEGLMDGVIPAEGNTYQQIH 196 Query: 55 LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + L D + + +I + ++Q+ Sbjct: 197 DEINRLQRLVDDLQELSRVESGAFHLKPELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIE 256 Query: 104 WTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++R ++L NL A P GGKVT+ + + E + S+ G Sbjct: 257 PNLPPVLIDKDRILQVLTNLVGNALQYTPSGGKVTVQISKQRTEILISVSDTGIGISPEH 316 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 I L + R+ E + L Sbjct: 317 LPFIFNRFYRTDKSRARASGGSGIGLTIAQALVKAHHGRIWAESGGEGKGSTFYFTLP 374 >gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 1054 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 59/236 (25%), Gaps = 30/236 (12%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----- 63 + + L + + H+I +P+ I +LL + + + I + S+ Sbjct: 374 VEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNTPLSPDQQEFISVIENSSDNLLSIVN 433 Query: 64 -----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + E I V S + Sbjct: 434 DILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPKTLVGDP 493 Query: 113 RERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++++NL A G + D F+++ G E+ +I Sbjct: 494 TKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGI-TEEQKAKI 552 Query: 168 VDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLEK 215 + L + +L E + L K Sbjct: 553 FGAFSQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGSTFFFTLTLPK 608 >gi|302533482|ref|ZP_07285824.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. C] gi|302442377|gb|EFL14193.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. C] Length = 435 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 56/214 (26%), Gaps = 15/214 (7%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 213 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 272 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 VD +G Q + +R V + D + KI Sbjct: 273 ISRIDSGRLEVRRQPVDLAAAVGRHVQALTANGQAPERFLVRVSSPLPDCWADPDKIDQI 332 Query: 122 LFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 L + ++ G VTI V + ++ G S Sbjct: 333 LGNLLENAVRHGDGTVTIDVAPHEKGTAVTVTDEGPGIPEESMARVFTRFWRGSKRGGTG 392 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y V + + + +L Sbjct: 393 LGLYIVKGIVEAHGGTITVGRGPGGGAEFRFILP 426 >gi|169347138|ref|ZP_02866080.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495] gi|169296821|gb|EDS78950.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495] Length = 467 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + + E +L+ + + Sbjct: 242 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 301 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A K +++ + + I+L ++ + Sbjct: 302 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 361 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 362 ALVNILSNAIRYSNEGSTIFIEERLKGNKVIISIEDQGIGISEEDLKYVFERFYRVDKSR 421 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 422 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 464 >gi|85858087|ref|YP_460289.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721178|gb|ABC76121.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 561 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 61/237 (25%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 +N ++ V +L + HD + I AI ++ L L+ + S + Sbjct: 183 ENELLRAQKLEAVGILAGGLAHDFNNLIAAILGNISLVKAGLNPEEKNCIRLIRAEQSCL 242 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113 A + + L Q + F V + Sbjct: 243 QARELTNRLITFSDGGKPRRHITSLTSFLQKMVFFTPQSASVLCRYRLPKNLYSVRIDEN 302 Query: 114 ERAKILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++ L+L A ++P S++ +G P Sbjct: 303 QIQQVFLHLLRNAEEAMPDGGEIVIEAENFCAASDLPPGLKKGRYVRCSVRDHGKGI-AP 361 Query: 162 EKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I + S + + ++ + + S L Sbjct: 362 EFQSRIFEPYYTSKPKGAEKGSGLSLAICYSIIRKHGGTITFSSESGQGTMFSFYLP 418 >gi|70732212|ref|YP_261968.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5] gi|68346511|gb|AAY94117.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5] Length = 567 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 66/228 (28%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + L AL + + H+I +P+G I + +LL + ++ + Sbjct: 328 LQHLEAQLRRRDRLHALGEVAMGLAHEIRNPLGIIKTATQLLHRRANLPENDKRHLEYVI 387 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + ++ Sbjct: 388 SEVSRINDLITEFLDFAKPSAPIRATQLARPLVEELLGFCTPELATHNIDARIDDQAPGA 447 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 L + ++ A ++P GG++T+ + +E I S+ G P+ + Sbjct: 448 TLHADARQLKQACLNLILNAIDAMPDGGRLTLGISQRDDETIISVSDTGQGI-EPDMLER 506 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + V + + + D S + Sbjct: 507 IFTPFVTTKASGTGLGLAKVFSIMESHDGHIECTSEKDAGATFSLYIP 554 >gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 678 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 282 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 341 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E V + Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 401 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ + ++ + S+ +G+ Sbjct: 402 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 461 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 462 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520 >gi|117928655|ref|YP_873206.1| periplasmic sensor signal transduction histidine kinase [Acidothermus cellulolyticus 11B] gi|117649118|gb|ABK53220.1| periplasmic sensor signal transduction histidine kinase [Acidothermus cellulolyticus 11B] Length = 524 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 55/225 (24%), Gaps = 19/225 (8%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAI 61 S L L H++ +P+ +I EL + ++ ++ + Sbjct: 265 AASEERLRRFLA-DASHELRTPLTSIRGYAELFRRGAARRPDDLEKAMRRIEEEATRMGV 323 Query: 62 IRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + LA G + E RV + Sbjct: 324 LVDELLLLARLDQGRQPVREPVLLAELVADACEDFRAAAPDRQVRVDADPDVVVSGDELQ 383 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD-- 169 +++ NL P G V I + + + G + F + Sbjct: 384 LRQVVTNLLTNVRVHTPPGTPVDIRLAAENGWAVLEVTDYGLGLPAADLPRVFDRFYRAD 443 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + L Sbjct: 444 PSRTRDHGGAGLGLAIVASVVQAHGGRVGVRNVPGAGACFRVELP 488 >gi|317402202|gb|EFV82793.1| sensor protein [Achromobacter xylosoxidans C54] Length = 456 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56 A+ ++ S L L + + HD+ +P+ ++ + L + ++ +R Sbjct: 212 AQQALVSMESEKLRNSLLAAVSHDLRTPLTSLVGMTDTLMRRQDALPADIQDTIRAMRDQ 271 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTG 106 + + + L +S Sbjct: 272 AQRMHALVANLLDMARLQSRDTPLRLEWQSIEELVGASLAAMREPLASHRISVDSLSGLP 331 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 ++L NL A P G + + E ++ NG Sbjct: 332 LVECDGVLIERVLCNLLENAAKYTPAGSAIRLHATAQDGELRVAVCDNGPGVAPGAERRI 391 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214 F + G ES + + + R+ E L Sbjct: 392 FEKFTRGERESATPGVGLGLAVCEAIVSAHHGRIWVEHAPGQSSGAQFVFTLP 444 >gi|229011293|ref|ZP_04168485.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048] gi|228749949|gb|EEL99782.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048] Length = 351 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + S + + + +K +++ +K+ Sbjct: 174 TTRLSKLSQNLLKLTILESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ K S+ G + Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ ++ E ++ + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 346 >gi|225386428|ref|ZP_03756192.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme DSM 15981] gi|225047467|gb|EEG57713.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme DSM 15981] Length = 468 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 58/235 (24%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M+ + + + HD SP+ +I LE + + + + + + Sbjct: 233 MSDELNKMEEYQK---NFIANVSHDFRSPLTSIKGYLEAILDGTIPPEMYGKYLSRVISE 289 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWT 105 + + M + + D + D E V Sbjct: 290 TERLHKLTESMLTLNSLDNRGYLSRSNFDINRVIKDTAASFEGTCDNKNIVFDLTFSDNI 349 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162 + ++L NL A + I + S+K G + Sbjct: 350 QMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASSRYEKIFISVKDTGIGIPKDSLKK 409 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ D + V + + + + L + Sbjct: 410 IWERFYKTDLSRGKDKRGTGLGLSIVKEIIQAHGENIDVVSTEGVGTEFIFSLPR 464 >gi|170737057|ref|YP_001778317.1| histidine kinase [Burkholderia cenocepacia MC0-3] gi|169819245|gb|ACA93827.1| histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1120 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 64/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ + + + + H+I +P+ +LELL +G+ E + ++ S Sbjct: 522 LRESRARAQAESHEKGMFLATMSHEIRTPLHGALGNLELLSRMGLTQEQRSRLLIAQDSF 581 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + ++ + + + + Sbjct: 582 GSLLSLINGVLDLSRIEAGEFLLQEQPQHIDQLVEQASRTFAADAQKNGVRLLCLIDPAL 641 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 G I +I+ NL A G + + +G E Sbjct: 642 RGTWICDGYRFTQIVTNLIGNAVKFTSHGAITVSLGSTEIGQVRLRVADSGRGIPEDEI- 700 Query: 165 TQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V+ + + +A + E + + +L Sbjct: 701 EKIFMPYVQGSAGPKSSRAGTGLGLSLCQKIAERMGGSITAESEVGVGSIFTVVLP 756 >gi|330890664|gb|EGH23325.1| sensory box histidine kinase [Pseudomonas syringae pv. mori str. 301020] Length = 360 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 121 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 180 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 181 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 240 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 241 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 299 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 300 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 351 >gi|255022541|ref|ZP_05294527.1| sensor histidine kinase [Listeria monocytogenes FSL J1-208] Length = 459 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLILASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165 ++ NL A P+ G + + + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQVHLYEETTNIFVEIQDSGVGISKADIAKIFE 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + ++ + + + + L K Sbjct: 407 RFYKVNESRTREEGSSGLGLSICKKIITLHRGEITVQSSPEKGTTFTVKLPK 458 >gi|167755205|ref|ZP_02427332.1| hypothetical protein CLORAM_00710 [Clostridium ramosum DSM 1402] gi|237734954|ref|ZP_04565435.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705255|gb|EDS19834.1| hypothetical protein CLORAM_00710 [Clostridium ramosum DSM 1402] gi|229381730|gb|EEO31821.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 896 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 68/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSM 58 + + + +L A L I HD+ +P+ +I + +L + + +++ Sbjct: 655 KREVEIKANQEELRANLLRSISHDLRTPLTSISGNAGVLLDSADKLSNERKIEIYSDIYE 714 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + + + + D +Q+ + E Sbjct: 715 DSMWLIDLVENLLSITRIENGNIQINKEAQLINEIVLEAMHHISKDSADHIIQLDLSDEF 774 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I + + ++++N+ A P G + I+ + + +G ++ Sbjct: 775 IFVKIDARLIMQVIINIVNNAIKYTPLGSTIKITTKKLNQVLSLEISDDGEGV-PDDQKE 833 Query: 166 QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + ++ + L Sbjct: 834 KLFEMFYTRNNLNGDSRRGLGLGLALCKSIVEAHDGKIKVIDNYPRGSIFVINLP 888 >gi|163868491|ref|YP_001609700.1| sensor histidine kinase [Bartonella tribocorum CIP 105476] gi|161018147|emb|CAK01705.1| sensor histidine kinase [Bartonella tribocorum CIP 105476] Length = 848 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 63/245 (25%), Gaps = 32/245 (13%) Query: 2 AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 K + + S + A+ L I HD + + AI S +LL + I+ Sbjct: 458 QKTLEDKIMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSSDPAHADLINIK 517 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107 ++ A ++ + + + I + K + Sbjct: 518 NNANRAAALVQQLLAFSRKQTLRPEEVDFTEFLSDIRNLILPLLGNNIQLKIIHGRDLWN 577 Query: 108 KIDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLK 152 ++++NL + A ++ + + ++ Sbjct: 578 VEVDQASFQRVVMNLVINARDAMFDGGIVTIATNNITKQQSAEFNHLGLVIGEYVQLTIS 637 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G ++ + + + V + ++ + E + Sbjct: 638 DTGTGISAA-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQSGGYIYCESKEGEGATFH 696 Query: 211 ALLEK 215 L + Sbjct: 697 IFLPR 701 >gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 499 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 A+ + + L + + H+I +P+ AI +++ + ++LI + Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319 Query: 56 SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 +S + + ++ F +I + + + + + + Sbjct: 320 NSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKEQTMKPISEIEIRALLPNE 379 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ N A + ++ G+ Sbjct: 380 DVYINTDATRLKQVISNFINNARKFTEKGYIHFGYAVDSVDASSVHVFVEDTGSGIPKEC 439 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + E L Sbjct: 440 QKEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVESEMGKGSRFIVTLP 492 >gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 579 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 69/228 (30%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL DE + M L++ ++ Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 395 Query: 58 MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + ++ G +D ++ L D V++ + Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDSAVELRFDENSPQ 455 Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L N A +G + +++ F + G +K Sbjct: 456 IVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +S + + L ++ E + Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVKRMGGKIGVESREGEGSCFWFT 563 >gi|296392537|ref|YP_003657421.1| integral membrane sensor signal transduction histidine kinase [Segniliparus rotundus DSM 44985] gi|296179684|gb|ADG96590.1| integral membrane sensor signal transduction histidine kinase [Segniliparus rotundus DSM 44985] Length = 569 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 63/233 (27%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-- 58 +A S + + H++ +P+ A+ EL + + R+ S Sbjct: 322 LASEEKAKSSERRMR-QFVADASHELRTPLTAMRGFAELHRTGAGVSTTIAMSRIESEAI 380 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 ++ + + D+ Q++ D + K + S T Sbjct: 381 RMGKLVEDLLVLARTDEERPLEKEPVDMLQLMTDAVHDAKAIAPSRTIRFEFQPSGGAPV 440 Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 ++L NL A VT+S+ ++ + + G + F Sbjct: 441 VLGDDASLRQVLSNLVSNALLHTGEDATVTLSLGGDAHDVLVEVCDTGPGLAPEDAERVF 500 Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + + L L + Sbjct: 501 ERFYRVDPSRTRSSGGSGLGLAIVNAIVRAHGGHASVRSELGVGTTLRVTLPR 553 >gi|293376810|ref|ZP_06623030.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] gi|292644562|gb|EFF62652.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] Length = 444 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 58/216 (26%), Gaps = 21/216 (9%) Query: 21 RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67 + H++ +PI AI E+L ++ DE + +I + +K + Sbjct: 226 NVSHELKTPISAIKGCTEILLNGAKNDPAALDEFLTMISDENNRMEQLVKDLLLINRYEF 285 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 ++ + L + +++ + + LNL Sbjct: 286 DQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLEAPEQYQIEGDYIQLKHCFLNLLT 345 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--GNVESTIDSH 179 A +T+ + + G P F + Sbjct: 346 NAIHYSGENTTITVKAKAVGEYYQIQVIDQGIGIPSADLPHIFERFYRVDRARSRHTGGT 405 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +K R++ + + L K Sbjct: 406 GLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPK 441 >gi|229059659|ref|ZP_04197037.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603] gi|228719672|gb|EEL71271.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603] Length = 351 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 73/233 (31%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + L + + + +K +++ +K+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ K S+ G + Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E ++ + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESVEGNGTEFIVRIP 346 >gi|167044201|gb|ABZ08882.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [uncultured marine microorganism HF4000_APKG5H11] Length = 795 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------- 51 + L L + + HD+ +P+GAI N LL + V + Sbjct: 561 LETARQLAFRGEKLAVIGQLSAGMAHDLRNPLGAIRNVTYLLKNELVTKGVFEGNAKLNT 620 Query: 52 -------LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + S+ S + F +L + + L + + +D + Sbjct: 621 CIEIIDNQVNKSNQSITDLMDFAKLKEATLVETNLDVVLAQALETLSQRDDIDLLKNIEP 680 Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + E+ + + +NL A ++P GG +TI+ ++ + G+ E Sbjct: 681 NIQPVMADGEQLQRVFVNLANNAQEAMPDGGSLTIAAKNVNGTVQITFSDTGDGI-SQEN 739 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE--IIDDHNVVLSALLE 214 +I D + + + + + + + + Sbjct: 740 LEKIFDPLFTTKVKGTGMGLAVCLEIVEGHAGTISVHRNAEPPGGTTFDVRIP 792 >gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 603 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54 M L L + + H++ +PI + E + + ++ + Sbjct: 357 MRDMTEERLHD-KLRKDFIANVSHELRTPISMLQGYSEAIIDDVAGSDEEKKELAQIIYD 415 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104 S + + + LA G + + ++ + +E + V Sbjct: 416 ESLRMGRLVNELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVADDNNVELMGEIDQ 475 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E +++ NL A G V + +++ ++ G + Sbjct: 476 SDTEAYVDPDRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGFRLDVEDTGAGIPEEDL 535 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + +K R+ S L Sbjct: 536 PFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEGTTFSVFLP 591 >gi|83312725|ref|YP_422989.1| sensor protein fixL [Magnetospirillum magneticum AMB-1] gi|82947566|dbj|BAE52430.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1] Length = 548 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 26/233 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 + + + ++ A + S HD+ P+ I + L LL+ G E + R + Sbjct: 315 ELERSNAELEQFAYVAS---HDLREPLRMISSYLSLLERRYAPKLEGDGLEFLAFARDGA 371 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------TGE 107 + + ++ + + + + ++ S Sbjct: 372 QRMDRLVLDLLDFSRIQRKGSPIVAMDADPLLHQALRHLAPAIEESGGAVEVAEGGEAVR 431 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ NL A +S Q + E + NG P+ F Sbjct: 432 VMGDPDQVIRLFQNLIGNAVKYRAPDRAPLVKVSWQRTGGEWECVVADNGIGI-DPQYFE 490 Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I I + + R+ E + D V L Sbjct: 491 RIFGIFQRLHTPDAYAGTGIGLAICKKIVERHGGRIWVESVPDQGSVFHFTLP 543 >gi|114565065|ref|YP_752579.1| periplasmic sensor signal transduction histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114336358|gb|ABI73740.1| periplasmic sensor signal transduction histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 714 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 75/231 (32%), Gaps = 22/231 (9%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQ 51 +++ L AL L + I H+I +P I ++ELL E IE + Q Sbjct: 462 TRQQLVTNEKLTALGELIAGIAHEINNPTAVILGNMELLKYELGDNAAIVEEEIELVIQQ 521 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---- 107 + R++++ + F ++ + + + ++ + V++ Sbjct: 522 VGRITTIIRSLLQYSRPGEFNAPITLQPVTPIVEEMLLLARHSIEQQEVKLIKEFTATGS 581 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLARFPE 162 + ++L+NL + A ++ G++ + D ++ G + Sbjct: 582 VEVNRPQLLQVLINLMVNAAHAIENKGRIWLRTYDWLEDGIAIGVKIEVEDEGMGISKQD 641 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + D + + + + + L Sbjct: 642 LS-RIFDPFYTTRKDGTGLGLSLSYGIIKRLGGTIEVNSTVGKGTIFTIGL 691 >gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2] gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2] Length = 465 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 67/234 (28%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 + +L + L L S I H++ +P+ I +++ + D+ + +I Sbjct: 222 SRLASDLHYLKLERNDFLAS-ISHELRTPLTYIKGYADIVHKRNLSIEDRDKYLNIIHEE 280 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + +K + D ++ + ++ V Sbjct: 281 ANRLSDLIKDLFDLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDVICPKE 340 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I +I+ NL A P G K +SV + K + ++ NG + Sbjct: 341 AVIIADPTRLEQIIFNLLDNAIKYSPPGAKTILSVNNKKKDVYIKVRDNGKGIPEEDLPY 400 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + V L + + + + + Sbjct: 401 ILNRFYRVDKSRTRSLGGTGLGLAIVKELVLAHGGTVSVRSKEGKGTEFELVFK 454 >gi|309792751|ref|ZP_07687196.1| GAF sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225203|gb|EFO78986.1| GAF sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 471 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + L S L A+ L + + H+I +P+ A NSL L L + + + + Sbjct: 234 LNTAQAQLLQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLAADDPQRAFLTIAQ 293 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + MR + + +V L ++ + S Sbjct: 294 QELGRIARIITRMRDFYRPTRAELASTSINVLLRETLELVQTHLRHSHINAVTELGSDIP 353 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARF 160 I + + ++ LN+ + A ++P ++ + ++ + G Sbjct: 354 AIIAHADQLRQVFLNIILNACDAMPDGGDLRVRTRMLQARHEAPTTIEIDICDTGAGI-P 412 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + + + + + ++ R+L E S LL Sbjct: 413 PEHLPHLFEPFYTTKTHGTGLGLAISAHIISQHNGRILVESEVCQGSTFSILLP 466 >gi|258620421|ref|ZP_05715459.1| Osmolarity sensor protein envZ [Vibrio mimicus VM573] gi|258587300|gb|EEW12011.1| Osmolarity sensor protein envZ [Vibrio mimicus VM573] Length = 438 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIARDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K ++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGITADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432 >gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 1021 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 MA++ N + + +A++ H++ +P+ A+ ++L + I+++ + +I + Sbjct: 773 MAESQAANRAKDEFLAVM----SHELRTPLTAVLGWTQMLRTRRNDPAIQEKGLDVIERN 828 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----W 104 + S ++ + + +VD + +V+ V Sbjct: 829 ARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVMEAGVG 888 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161 G ++ NL + A P GG+V + V+ E +K +G R P Sbjct: 889 GGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALP 948 Query: 162 EKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 F + G+ + V L + + E H + L Sbjct: 949 HLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 1004 >gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1353 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 60/239 (25%), Gaps = 34/239 (14%) Query: 8 NLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 L L A L + + H+I +P+ A+ LL + + ++ ++ + Sbjct: 809 ELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDTPLNEQQRDFLQTLHQA 868 Query: 60 AIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVD-----KRVQVS 103 L + ++ D + D+ ++ Sbjct: 869 GEALLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPE 928 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARF 160 + +IL+NL G ++ K+ F ++ G Sbjct: 929 TPAQIKGDVTRLRQILVNLVGNGIKFTHEGQVAVHVGVLKREGKDFLQFQVQDTGIGI-P 987 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ ++ + L + E + + + Sbjct: 988 RDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTTFTFTI 1046 >gi|119386645|ref|YP_917700.1| PAS/PAC sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] gi|119377240|gb|ABL72004.1| PAS/PAC sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] Length = 350 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 18/234 (7%), Positives = 57/234 (24%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64 + + + + H++ +P+ A+ +E L + + ++ + + Sbjct: 111 ETEQMRRDFVANVSHELRTPLTALMGFIETLRGPARNDPAARARFLDIMEREAGRMNRLV 170 Query: 65 KFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + A R+++ K+ + + Sbjct: 171 ADLLSLSRVEQDERRRPAQNLDLAGLLRSVVATLTPAAAAAGVRLELQGAAGKVPVPGDA 230 Query: 116 AKILLNLFMVAHASLPRGGKVT----------ISVQDSKNENIFSLKINGNLARFPEKF- 164 +++ + +L GG S+ G Sbjct: 231 DQLVQVFHNLVENALKYGGGGGVATVTLERLAHEPVLRGPAWAVSVADQGEGIDQQHLPR 290 Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + ++ RL E + +L Sbjct: 291 LTERFYRVDTHRSREQGGTGLGLAIVKHIVNRHRGRLRIESERGKGSRFTVILP 344 >gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 935 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 32/243 (13%) Query: 2 AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + +L + A S + H+I +P+ AI ELL E + E + Sbjct: 534 QRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGEHDLPAEACDFL 593 Query: 54 RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + + + + + + I V + R Sbjct: 594 KTIRRNGDYLLDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRSIMDVRASEKDLQIR 653 Query: 100 VQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 V + +IL+NL A + G V ++V+ F + +G Sbjct: 654 VCYDGKLPRRIQSDPKRLKQILINLVGNAIKFTRQ-GHVDLAVRYVDGHLQFDITDSGIG 712 Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ ++ V + LA + + +A Sbjct: 713 M-SDDQKAKLFQPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIYVQSQLRQGSTFTA 771 Query: 212 LLE 214 ++ Sbjct: 772 TIQ 774 >gi|241888981|ref|ZP_04776285.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379] gi|241864230|gb|EER68608.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379] Length = 642 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 60/227 (26%), Gaps = 22/227 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRL 64 S + H++ +P+ +++ +E +L++ + + + I + I + Sbjct: 407 RQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVLEDKELAPQFIDTIHKETTRMIRMV 466 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------- 116 + + + + I + + + Sbjct: 467 NELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKNFIKHIPKSPIFVEGDQDK 526 Query: 117 --KILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ N+ A P V + N S+K G Sbjct: 527 LTQVFDNIVNNAIKYSPNGKNITVRVRQNYHHNRVSISIKDEGVGIPLVHIDKIFNRFYR 586 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + +K R+ + + + ++ L Sbjct: 587 VDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLP 633 >gi|168702165|ref|ZP_02734442.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 881 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 73/243 (30%), Gaps = 31/243 (12%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 K + + + A+ L + HD + + I+ +LL ++ V Sbjct: 497 RKRLEAQFRQAQKMEAVGRLAGGVAHDFNNLLTVINGYTDLLLGGPLAENDRAALAAVRD 556 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L F R A +D + E+++ I D + V+ + Sbjct: 557 AGERAAGLTSQLLAFSRKAIVAPQVLDLKEVVAQAERLLRRLIGEDVALTVTSHAGPCWI 616 Query: 112 SRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKN---------------ENIFSLKI 153 + + +++NL + A ++P GG++T + +++ Sbjct: 617 EADLNQLDQVIMNLAVNARDAMPTGGRLTFETRRIPVAPGSSTDSGELRAGWYVSLAVRD 676 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G E ++ + + + V + + + E Sbjct: 677 TGCGM-SNEVKARLFEPFFTTKGPGKGTGLGLAVVHGIVKQAGGHIWAESAPGAGTTFHI 735 Query: 212 LLE 214 L Sbjct: 736 LFP 738 >gi|168700887|ref|ZP_02733164.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 441 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 60/232 (25%), Gaps = 23/232 (9%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RL 55 +++ AL L + + HD + + LL + Sbjct: 188 ERSVAHEKAAALEQLAAGVAHDFRNLLTVFLGYGGLLARRDDLPHDARKQAKDIVTAAEQ 247 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + A L+F +D + V++ I ++Q + E + E+ Sbjct: 248 GTALAKGLLEFAHPQTAPPAVLDLGAVAAEFMPVLKAAIGSKYKIQYTQPDELGQVFIEK 307 Query: 116 AKILLNLFMVAHASLPRGG------------KVTISVQDSKNENIFSLKINGNLARFPEK 163 + L +A + K+T + + + G+ E Sbjct: 308 GQFTRLLLNLAVNASEAMPAGGLVAIRLAPVKLTGNPSYLGRFVLLEVTDTGSGI-DAET 366 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ D + + V + + E + + Sbjct: 367 QRRMFDPYFTTKSKGTGLGLAIVRRIVDRVGGLIRVESSESKGTTFRVFFPR 418 >gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 596 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 53/223 (23%), Gaps = 25/223 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF--- 66 + + + H++ +P+ AI E++ + + + L+ + + Sbjct: 362 STFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQNDLIADLDRVVLAGRHLLNLINDILE 421 Query: 67 --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAK 117 +++ + + + + V V + Sbjct: 422 LARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRNQNTLTVTVEPNLPPVKADPTRLRQ 481 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +LLNL A +G + G PE+ + + Sbjct: 482 VLLNLIGNACKFTEQGQIHVRCYSPQPGIIQIDVSDTGIGI-PPEQLASLFQPFMQVDNG 540 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L ++ E S L Sbjct: 541 TTRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGSTFSVRLP 583 >gi|315127977|ref|YP_004069980.1| osmolarity sensor protein [Pseudoalteromonas sp. SM9913] gi|315016491|gb|ADT69829.1| osmolarity sensor protein [Pseudoalteromonas sp. SM9913] Length = 437 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 63/205 (30%), Gaps = 8/205 (3%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 LL + + HD+ +P+ I + E++ + + +I I +F+ + Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMVDED-DYLREGIIYDIEDMNGIIDQFIEYLRHHKRE 285 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPR 132 S + + + +RV + + +++ N+ A Sbjct: 286 EQSYEDINALVAEVVQSELKHQRVITFESNPNLGNIPISSVAIKRVVTNMIENALRYSQG 345 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILL 189 +V +K I ++ NG E F G+ + + + + Sbjct: 346 DIEVQSYFNSNKKYVIIAVNDNGPGIPESELESVFEPFKQGDAARGSEGSGLGLAIIKRI 405 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + +++ + + L Sbjct: 406 IDMHNGKVVLSNRPEGGLSAQIYLP 430 >gi|309792039|ref|ZP_07686515.1| ATPase domain-containing protein [Oscillochloris trichoides DG6] gi|308225932|gb|EFO79684.1| ATPase domain-containing protein [Oscillochloris trichoides DG6] Length = 801 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 27/234 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 + + I H++ +P+ I +LL E + +L+ + Sbjct: 551 TEAVLMDQAK--TDFIATISHELRTPLTVIRGYTDLLLRGRGEEAPTTDQAELLEQVRLR 608 Query: 60 AIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 A+ + A L+ + + + F + + + + + Sbjct: 609 AVDMTNIVNNAIMIADLESGQLETDLQPQDVELVLSMALSPLRQGFESKNLSINLELAPD 668 Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +R ++ A +GG + + +E G E Sbjct: 669 LPPVLADREQLRRAFGQILDNALRYTHQGGVTIQATVRNAHEIEVHFSDTGTGI-PAEML 727 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ S + L + + L Sbjct: 728 PRLFMRFQRVEGNNSAQRGSGLGLAITRQLIERQGGHVTVISTPGEGSTFTITL 781 >gi|300172611|ref|YP_003771776.1| two-component sensor kinase [Leuconostoc gasicomitatum LMG 18811] gi|299886989|emb|CBL90957.1| Two-component sensor kinase yycG [Leuconostoc gasicomitatum LMG 18811] Length = 623 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 66/241 (27%), Gaps = 33/241 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 + S + S + H++ +P+ ++ + ++ L D+ + + +++ + Sbjct: 369 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAIDDPEMAQNFLGVVQDETQ 426 Query: 59 SAIIRLKFM---------------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 I + + L D +I + Sbjct: 427 RMIRMINDLLALSRLDQGTMDVRLEVVNLNSLFNFVLNRFDMIIESDAKNTDTPNKNYNI 486 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +R + + ++L N+ A P GG +T + +K I S+ G Sbjct: 487 QREFTNEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 546 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + +++ Sbjct: 547 IPRKDLDSIFNRFFRVDKSRSRAQGGTGLGLAISKEVVERFNGRIWVDSVENRGSTFYIS 606 Query: 213 L 213 L Sbjct: 607 L 607 >gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 534 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 57/229 (24%), Gaps = 22/229 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKEDKPVPVLLAPTLPNF 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFT 165 + +++ N A +G + E FS+ G P+K Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKEDTSEIEFSVADTGMGI-EPDKVD 477 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ D V S + + + E Sbjct: 478 RVFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGTGSRFWFT 526 >gi|237734956|ref|ZP_04565437.1| two-component system sensor protein kdpD [Mollicutes bacterium D7] gi|229381732|gb|EEO31823.1| two-component system sensor protein kdpD [Coprobacillus sp. D7] Length = 486 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 60/234 (25%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + + L + L I HD+ +P+ +I L + D + +I+ S Sbjct: 246 KEEARLQVEREKLKSTLLRSISHDLRTPLTSIAGGANFLVNNLDTVESDTSLNIIQDISK 305 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------------IEDFIAVDKRVQVSWT 105 A+ + T + + +V + Sbjct: 306 EAMRLNGMVENLLNMTRIQEGNFKINKKLEVVDDIISTAVSAITNRKENHELVVKETKDI 365 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+NL A P KV + N IF + NG + Sbjct: 366 ILFPCDAQLIVQVLVNLLDNAFKHTPDASKVMLKAFVRNNNIIFQVIDNGKGIEIKQLNH 425 Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D S + + +K + D L Sbjct: 426 IFDDFFTTSLDNGDHKRGIGLGLAICKAIVEAHKGEIKAFNNDLGGATFELSLP 479 >gi|227873738|ref|ZP_03991968.1| possible sensor histidine kinase [Oribacterium sinus F0268] gi|227840418|gb|EEJ50818.1| possible sensor histidine kinase [Oribacterium sinus F0268] Length = 348 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + +N L L + I HD+ +PI +I E + + + + +Q I Sbjct: 102 LKQNQEEKLKDEQENRELVTNIAHDLKTPITSIKGYAEGILDGVASTEEKKRKYIQTIYH 161 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113 ++ + + + +V+ + + G + + Sbjct: 162 KAVEMNRLIDELNYYAKIETNRIPYHFCQLPALEYFQDFSVEVAMDLDAMGYRFETDFLL 221 Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 + K+L N+ A + + V D+ + + NG Sbjct: 222 EESVEVIADPEQLRKVLNNIISNAIKYMDKKDPKIRFVLSDAGDFVEVEISDNGKGIEKK 281 Query: 162 EKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + I V + ++ R+ E + +L K Sbjct: 282 DLPNIFERFFRTDAARNTETGGSGIGLSIVKKIIEDSGGRIWAESELGEGTSIHFVLRK 340 >gi|311740195|ref|ZP_07714027.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304750|gb|EFQ80821.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC 33035] Length = 503 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSS 57 + +++ + + H++ +P+ ++ EL +D + ++ S Sbjct: 265 LQRSVVRAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATKDVDLVFSKIDDESK 324 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113 +++ + L +D + A S Sbjct: 325 RMSLLVEDLLALTRAEGTRLDLHPVDLLELALSVGSSARAAFPGREIKVANDAKSIPVVN 384 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++LLNL VT+ ++ N+ + + +G + F + Sbjct: 385 GDASRLHQVLLNLVTNGIRHGGEDATVTLRLRREANDVLIDVSDDGKGMSQEDAAHIFER 444 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ + + + L Sbjct: 445 FYRADTSRTRDTGGSGLGLAIVHSLVEQHDGSISVDSELGRGTTFTVRLP 494 >gi|220908950|ref|YP_002484261.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865561|gb|ACL45900.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1432 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 78/238 (32%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 ++ ++ + L S + HD+ + + I S +LL + G E++++I ++ Sbjct: 1058 ESQFLRAQRLESIGTLASGMAHDLNNMLTPILASSQLLQKQFPEGRSQEILKIIEANARR 1117 Query: 60 AIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + + L +I+Q+ E + + + + Sbjct: 1118 GADLIRQVLTFARGTEGKRIPLQVKHLLTEIQQICERTFPKSITIVLDVVSTLSTILADP 1177 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDS--------------KNENIFSLKINGNLA 158 ++L+NL + A ++ GG++ + ++D + ++ G Sbjct: 1178 TQLHQVLMNLCVNARDAMSVGGQLQLRLEDFFIDENYARLLALQSGAYIVITVADTGTGI 1237 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + + E H L Sbjct: 1238 -APEVLERIFDPFFTTKAVGQGTGLGLSVAEGIIRSHGGIITVESEVGHGSQFKLYLP 1294 >gi|329768145|ref|ZP_08259650.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341] gi|328838056|gb|EGF87675.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341] Length = 641 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 18/227 (7%), Positives = 59/227 (25%), Gaps = 22/227 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRL 64 S + H++ +P+ +++ +E +L++ + + + I + I + Sbjct: 406 RQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVLEDKELAPQFIDTIHKETTRMIRMV 465 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------LSRE 114 + + + + I + + Sbjct: 466 NELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKNFIKHISKTPIFVEGDQDK 525 Query: 115 RAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ N+ A P + + N S+K G Sbjct: 526 LTQVFDNIVNNAIKYSPNGKNITIRVRQNYHHNRVSISIKDEGVGIPLVHIDKIFNRFYR 585 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + +K R+ + + + ++ L Sbjct: 586 VDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLP 632 >gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1043 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 65/242 (26%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 + + L + L + + H++ +P+ A+ +LL + ++ I + Sbjct: 645 LHQRAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQLLRSRKFDEEKTARALETIDRN 704 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + S ++ + VD + + + + + E+ Sbjct: 705 TKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVVEAAIETVIPAAQAKSIQIIPLLDER 764 Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSK------NENIFSLKINGNLA 158 I+ +++ NL A P GG VTI++ + G Sbjct: 765 IERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIAIHRVGSELEGNFCAEIEVTDTGQGI 824 Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSAL 212 + + + V L + + + + Sbjct: 825 NPEFLPHVFDRFSQADSTTTRSYSGLGLGLAIVRHLVELHGGTVKADSQGSGKGSAFTVR 884 Query: 213 LE 214 L Sbjct: 885 LP 886 >gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. 230613] Length = 522 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 297 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 356 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + R+ + I + + Sbjct: 357 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 416 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G E +I + Sbjct: 417 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 475 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 476 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 518 >gi|258623924|ref|ZP_05718877.1| sensor protein TorS [Vibrio mimicus VM603] gi|258583718|gb|EEW08514.1| sensor protein TorS [Vibrio mimicus VM603] Length = 968 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL E + +++ + S Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L NL + + IS F+++ +G + Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPDGQGIRFAVEDSGIGIAEQDQV 636 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + L L S L Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFTLP 689 >gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. Langeland] gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. Langeland] Length = 569 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + R+ + I + + Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 463 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G E +I + Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565 >gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 739 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 57/226 (25%), Gaps = 28/226 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63 + + + H+I +P+ AI ++L + E ++++R + Sbjct: 345 SEFLANMSHEIRTPMTAILGFTDILINDLNQTEEIEVVRTIHQNGEYLLGLINDILDLSK 404 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--KIDLSRERAKIL 119 + + + + + + + QV + V +IL Sbjct: 405 IEDGKLDVEWLDCSPHEIVNDVISLLQVRAVAKGIPLEVNFEGPVPELIHTDPARLRQIL 464 Query: 120 LNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +NL A G + Q + + F + G E+ + Sbjct: 465 INLIGNAIKFTEHGSVQLVIRLVSNQQSDQQKLHFDVFDTGIGI-AAEQIENLFLPFTQA 523 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + S ++ Sbjct: 524 DSSTTRQYGGTGLGLAICKRLVELLGGTIQVSSTVGKGSTFSVIIP 569 >gi|78043258|ref|YP_358963.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995373|gb|ABB14272.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 485 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 79/237 (33%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++ + L + I HD+ +PI AI +E + + E + + Sbjct: 244 LKESEELKKQYEENRKELIANISHDLKTPITAIKGYVEGIRDGVADSPEKLSRYVDTIYR 303 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------------VIEDFIAVDKRVQVSWTG 106 I+ + + +D + E+ + D +++ Sbjct: 304 KILEVDGLIDELFLFSKLDLKKLPFNFEKVNLNRYLSDVAEELEFDLRKKGIELKLHLPC 363 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLAR--- 159 +++ + +R +++ N+ + + + +V I+V+D + I + NG Sbjct: 364 QQVFVWADREKLKRVINNIVDNSVKFMDKENSQVVINVKDEEKRVIIEIADNGRGIPLDA 423 Query: 160 FPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P+ F + + + + E+ + + + +S L+K Sbjct: 424 IPKIFERFYRVDSARTGTSGSGLGLSIAAKIIEEHGGEIWANSVLNEGTTISFTLKK 480 >gi|15894978|ref|NP_348327.1| sensor histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15024665|gb|AAK79667.1|AE007679_13 Sensory histidine kinase (with HAMP and PAS domains) [Clostridium acetobutylicum ATCC 824] gi|325509115|gb|ADZ20751.1| Sensory histidine kinase (with HAMP and PAS domains) [Clostridium acetobutylicum EA 2018] Length = 566 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 20/222 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L ++ + E + +I + + Sbjct: 344 ENMRTQFVANVSHELKTPLTSIKGFAETLRYVEDDNQKGEFLDIIDDEVDRLTRLISDIL 403 Query: 68 ---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + + + + +V I + + ++ Sbjct: 404 TLSDIEIRPFMKKEEFDVNEIIKAVCGLLEKSASRKNISLKVFGEDVPNLIGDNDKFKQM 463 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172 ++NL A GG+V++ + +K++ I S+K NG E +I + Sbjct: 464 IINLVDNAIKYTEAGGEVSVYKKYTKDDVIISVKDNGVGI-PKEHLQRIFERFYRVDKAR 522 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + Sbjct: 523 SRANGGTGLGLAIVKHIVLNFNGSINIESKLGVGTEFIITIP 564 >gi|94972033|ref|YP_594073.1| periplasmic sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94554084|gb|ABF43999.1| periplasmic sensor signal transduction histidine kinase (and HAMP domain) [Deinococcus geothermalis DSM 11300] Length = 367 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMR-LAFGYTG 75 L + + H++ +PI A+ E L + ++ + ++ + + + ++ G Sbjct: 145 LIANVAHELRTPIAALRGYTEALADGVMDPVAAREALQREVSALERLARDLSLVSQVERG 204 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFM 124 ++ + +++ + A++L NL Sbjct: 205 RLELHLSTFSPADLLQAARERFEGAYDEKGVELGVQLPPGLPPVRADFGRAAQVLANLLT 264 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTIDSH 179 A P GG+VT+ F + G+ P F + Sbjct: 265 NALRHTPPGGQVTVGAVADGPFVQFLVTDTGSGIAAEHLPRVFERFYRADPARSRADGGS 324 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E + + L Sbjct: 325 GVGLTIARGLVERMGGHIRAESVPGQGSRFAFTLP 359 >gi|332701877|ref|ZP_08421965.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552026|gb|EGJ49070.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 550 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 70/232 (30%), Gaps = 27/232 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE------------DEVM 50 + S + AL + + + H++ +P+ I S +LL E E D++ Sbjct: 318 MQSNKMAALGKMAAGVAHEVNNPLTLIRESAGWIKDLLTEEDPEAIKNYEEIAEAVDKID 377 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKI 109 Q + + L F R +VD + + + + + ++ + Sbjct: 378 QNVERAKGVTHRMLGFARRMEPMQENVDLNQVAKQTMAFLQNEALHRNIELRAELAPDLP 437 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKF 164 + + A++ L + ++ ++S S+ G E Sbjct: 438 HTATDTAQLQQVLLNLLENAIDAVDHDGTVTIRTRTEESGKRIQLSVIDTGKGI-PKEMQ 496 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D V + + + + + E + + L Sbjct: 497 GRIFDPFVTTKGVGEGTGLGLSISYGIMERLGGGIAVESEEGEGATFTLTLP 548 >gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 992 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 61/230 (26%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI +L E+E + + + + Sbjct: 617 LTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTDEEEEKQEYVSIIENNN 676 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105 + L+ + + L L Q+ V + Sbjct: 677 TLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKN 736 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++L+NL A G + + E F + G ++ + Sbjct: 737 CFIHTEKNRLSQLLINLISNAIKFTTE-GYIRFGYELRGKEIYFYVSDTGCGIPKDKQKS 795 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + + L Sbjct: 796 IFGRFVKLNSFEQGTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 845 >gi|296111787|ref|YP_003622169.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU 11154] gi|295833319|gb|ADG41200.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU 11154] Length = 451 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 21/227 (9%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIR 63 L + + + + H++ +P+ AI +E L + + ++ + Sbjct: 224 LQAERMQSDFLANASHELKTPLTAITGFVETLQGPAGESLETRQQFLGIVAEEAQRLTSL 283 Query: 64 ----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + D + Q + V + V Sbjct: 284 VSDILSLSRVQQKSEAVSLEMAVHDMVNDQWQHVQTLASVKHVALKNDVPSDFFVRGFKN 343 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170 + A IL NL + A G + I+ ++K G + F + G Sbjct: 344 DMATILQNLIVNAVKYNKPNGHILITAYKDHQHWQINVKDTGIGIPKNQQSRIFERFYRG 403 Query: 171 NVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ L +S L Sbjct: 404 DESRQRTIASGTGLGLSIVNEIVRKHNGDLKVNSQVGVGTTISVTLP 450 >gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1014 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 61/230 (26%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI +L E+E + + + + Sbjct: 639 LTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTDEEEEKQEYVSIIENNN 698 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105 + L+ + + L L Q+ V + Sbjct: 699 TLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKN 758 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++L+NL A G + + E F + G ++ + Sbjct: 759 CFIHTEKNRLSQLLINLISNAIKFTTE-GYIRFGYELRGKEIYFYVSDTGCGIPKDKQKS 817 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + + L Sbjct: 818 IFGRFVKLNSFEQGTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 867 >gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] Length = 992 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 61/230 (26%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI +L E+E + + + + Sbjct: 617 LTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTDEEEEKQEYVSIIENNN 676 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105 + L+ + + L L Q+ V + Sbjct: 677 TLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKN 736 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++L+NL A G + + E F + G ++ + Sbjct: 737 CFIHTEKNRLSQLLINLISNAIKFTTE-GYIRFGYELRGKEIYFYVSDTGCGIPKDKQKS 795 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + + L Sbjct: 796 IFGRFVKLNSFEQGTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 845 >gi|154482552|ref|ZP_02025000.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC 27560] gi|149736577|gb|EDM52463.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC 27560] Length = 436 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 67/226 (29%), Gaps = 21/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 S + + + H++ +P+ +I EL++ ++ +Q + RL + Sbjct: 207 KSSKMRQEFTANVSHELKTPLASISGYAELIETGMAKEGDIQHFASEIHKSANRLLSLIN 266 Query: 70 AFGYTGSVDSLIG-------------LGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSR 113 +D + + ++ + + + + Sbjct: 267 DIIELSQLDVMDHQLSTTNVSLNEEVVSCVDMLQMNAEKHNITIATDIIEKDCIIKANQE 326 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170 +++ NL A G V SV + I +K +G + F + Sbjct: 327 MIQEVIYNLCDNAIRYNKPEGHVWASVFKKDDNIILQVKDDGIGIPEDDLNRIFERFYRV 386 Query: 171 NVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V ++ +++ + + +S + + Sbjct: 387 DKARSKKTGGTGLGLAIVKHISEQHEAEIQIDSTLGEGTTISIIFK 432 >gi|115373113|ref|ZP_01460415.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1] gi|115369869|gb|EAU68802.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1] Length = 1172 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 60/243 (24%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + + + + A+ L + + H+I +P+ I ++L + + Sbjct: 778 LQSTRERLVHAEKMAAVGTLAAGVGHEINNPLAFIISNLHYASLEVKHAAQQEPDQERWA 837 Query: 58 -----------------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 F R+ + VD L + + RV Sbjct: 838 EVEQALSEALLGADRVRRIVQDLKTFSRVQPEHPQRVDLHEVLELALSFADAEVRHRARV 897 Query: 101 QVSWTGEK--IDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKI 153 + ++ LNL + A + P + QD K + + ++ Sbjct: 898 VKDYGTVPAVFGDEARMGQVFLNLVINAAQATPEGHADEHEIRITTRQDEKGQAVVAVSD 957 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G PE +I + + + + Sbjct: 958 TGIGI-PPEVLPRIFEPFFTTKPVGVGTGLGLSICHGYVQALGGDIRVHSTLGSGTTFEV 1016 Query: 212 LLE 214 L Sbjct: 1017 TLP 1019 >gi|17228774|ref|NP_485322.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130626|dbj|BAB73236.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 498 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 56/236 (23%), Gaps = 26/236 (11%) Query: 5 ICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + L L +L S + H+ +P+ I ++EL++ G + Sbjct: 259 LEQALQKERELNHLKSLFISTVSHEFRNPLSVIQTAIELIELHGQNLTETKKNTYIRRIK 318 Query: 61 IIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + L + +E Sbjct: 319 GAVQSMKLLMEDVLFMGKSEAAKLECNLVLLNLKEFCQELIEEFTAVETSGHEIIFTCSD 378 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR-- 159 T R I +NL A P+ + +K IF ++ G Sbjct: 379 ETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTCDQTKGVAIFQIQDEGIGIPIA 438 Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + +I + V +K + + + L Sbjct: 439 DQSHLFESFYRASNSQSIQGTGLGLVIVKRCVEAHKGEIAFSSQEGMGTTFTITLP 494 >gi|294142893|ref|YP_003558871.1| nitrogen regulation protein NR(II) [Shewanella violacea DSS12] gi|293329362|dbj|BAJ04093.1| nitrogen regulation protein NR(II) [Shewanella violacea DSS12] Length = 370 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 22/230 (9%) Query: 5 ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 L + A L + H+I +P+G + + +LL + E+ + + A Sbjct: 139 QQLTLDAQQQAAQYLVRNLAHEIKNPLGGLRGAAQLLSRELHDPELHEFTDMIIEQADRL 198 Query: 64 LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + + +++ + + + + + D++ + +I Sbjct: 199 RNLVDRLLGPQKPTQHTQQNIHEVIQKVLKLVTMALPENIQFKQDYDPSIPDINMDPEQI 258 Query: 119 LLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + ++TI Q K S+ NG PE Sbjct: 259 QQAVLNIVQNAVQALEGVGGNIIIKTRAQHQITIGTQRHKIVIALSVIDNGPGI-KPELM 317 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + A + R+ + + LL Sbjct: 318 DTLFYPMVTGRDQGSGLGLSISHNFARLHGGRIDCQSTPGE-TEFTILLP 366 >gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 801 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 34/246 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L + +AL + + H+I +P+ AI ++L + + + Sbjct: 373 RKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLLGHLEDPDNRNCV 432 Query: 54 RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + L + + + + + QV D VD + Sbjct: 433 MIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQ 492 Query: 100 VQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKIN 154 V+ ++L+NL A G FS+ Sbjct: 493 VEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGADPPVVEFSIVDT 552 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G E+ ++ V + L + E Sbjct: 553 GIGI-SKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEMSLESELGEGST 611 Query: 209 LSALLE 214 L Sbjct: 612 FFVRLP 617 >gi|116619533|ref|YP_821689.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222695|gb|ABJ81404.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 532 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 65/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----------GIED 47 + L S L +L L + + H+I +P+ + N L+ + Sbjct: 276 LKAAQKKLLQSDRLASLGQLSASVAHEINNPVSGVLNLSMLMQRMLKDDGIPPERLAEFR 335 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101 + + + + + + + + I + + ++ Sbjct: 336 KYLGQVTSETARVGRIVSDLLAFSRRGKPQQAPADINRIVAMTLSLVEHKMKLSNVAVKV 395 Query: 102 --VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNL 157 + +++LNL + A + ++V S + + NG Sbjct: 396 TLCEQLPPAHCDPSQIQQVVLNLVLNAAEATQARPDRHVTVSTSSSEGMAQIFVSDNGEG 455 Query: 158 ARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I D + + + + + + + L Sbjct: 456 I-PPENLSKIFDPFFTTKPEGKGVGLGLAVTYGIIEAHSGDIEVKSTVGKGTTFIVSLP 513 >gi|255016502|ref|ZP_05288628.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 622 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 15/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + L + + + H+I +P+ AI +LL +++ + + LI++++ Sbjct: 385 LIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDLELRQNYISLIKMNN 444 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGE 107 + + + V + D+ I+ + + Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLDACPDII 504 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166 +I +NL A +G +D F + G E Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCGIPKDELDNI 564 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + + L Sbjct: 565 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 >gi|228956707|ref|ZP_04118494.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802972|gb|EEM49803.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 314 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREALIEFLPELSKHNIKLQVLIPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ E + G + Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E + K Sbjct: 252 QNIFERMYRSEQSRNSSYGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308 >gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] Length = 946 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + VQ + + S++ G Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQCAGDYLQISVRDTGEGIPA 628 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + E + + Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687 >gi|219847783|ref|YP_002462216.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542042|gb|ACL23780.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 384 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50 + + S + +L L + + H+I +P+G + N+L L E E Sbjct: 144 LKAAQTQLVQSEKMRSLGQLVAGVAHEINTPLGYVANNLAFLAERLPALRAAPTDELGWR 203 Query: 51 QLIRLSSMSA----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + S F R D GL +++ + Sbjct: 204 DVTDAIRESQTGIERIAAIVRALRVFARPDEDSLVPADVNEGLASTVRMVRAVSGPRVTI 263 Query: 101 QVSWTGEKI--DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + E ++ LNL + A + G V +++ G Sbjct: 264 HEEYAQVPRVLCHPGELNQVFLNLLLNAVHACRGTGTVIAQTMSDGTSITVTIRDTGIGM 323 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + +L + + +L Sbjct: 324 DAATL-ARLGEPFFTTWPDGEGTGLGLAISREIVARHGGQLRFQSEPGRGTTVEVILP 380 >gi|115371970|ref|ZP_01459282.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115370935|gb|EAU69858.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 463 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 58/219 (26%), Gaps = 22/219 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG---- 72 + + HD+ +P+ + S ELL +L + + R+ Sbjct: 240 QFLAGVAHDLRTPLNTLKLSTELLLRAPTPPPPEKLRESLLRISAQLDRLNRMVGDLLDQ 299 Query: 73 ----------YTGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSRERAKILL 120 D + ++ ++ + ++L Sbjct: 300 TRIEAGNLELRLEDTDLCTLVREVAELHRPLSQQHQIELTVPDGPVPVRGDPTRLIQVLT 359 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176 NL A P GG+V + ++ S+ E + S+ G E + +I S Sbjct: 360 NLLSNAIKYSPLGGRVRVLIEQSQEEVLLSVSDEGVGIPPGE-YERIFAPFKRSASASAE 418 Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L Sbjct: 419 LPGIGLGLSVSRRIVRAHGGNIEVVSQEGAGSTFRVRLP 457 >gi|288960772|ref|YP_003451112.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288913080|dbj|BAI74568.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 593 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 65/217 (29%), Gaps = 15/217 (6%) Query: 12 MDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIRLSSMSAI 61 L + I H+I +P+G I S ++L V+ + Sbjct: 368 EKLAILGEAAAVIAHEIRNPLGIIKTSSQVLRMKSQPPEASDRLIGFVLDEVGRMEALVQ 427 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAK 117 L + R VD L ++ + I + + + + + Sbjct: 428 ELLDYARPKAAMRQVVDLGAELRNVLEFIAAEMFRRRVLPKVELPDGPLPVQGDPSQLHQ 487 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LLN+ + A ++P GG ++++ +E S+ G + ++ + V + Sbjct: 488 ALLNILLNAMEAMPDGGALSVTALREGDEVAVSIADTGVGI-PEDLRDRVFEPFVTTKRR 546 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + L Sbjct: 547 GTGLGLARVQDIMERHGGSVHFVSAPAVGSTFILRLP 583 >gi|262166717|ref|ZP_06034454.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus VM223] gi|262026433|gb|EEY45101.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus VM223] Length = 438 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + L NL + Sbjct: 280 YLKPVNREAFEAVDINEIANDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K ++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432 >gi|261409395|ref|YP_003245636.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261285858|gb|ACX67829.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 357 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMS 59 + + S L L + I H+I +P+ +I ++L+ DE +I Sbjct: 131 QEEKRLIQSDKLSMAGQLAAGIAHEIRNPMTSIKGFVQLIRSGAGRKDEYFDIISSEIER 190 Query: 60 AI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDL 111 L + D L + ++ + ++ Sbjct: 191 IELIVSELLFLAKPQSVKFERADIRQLLEQVITLLNTQAIIHNVEIITDFGEQEANVDGD 250 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ +N A S+P GG++TI + S NG +++ + Sbjct: 251 VNHLKQVFINFIKNAVESMPDGGELTIRLERGSDETVAIHFTDNGCGIPES-ILSRLGEP 309 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + F + +++ ++ ++ +L Sbjct: 310 FFTTKEKGNGLGFMISKKMIEDHRGQVYVTSKLQEGTTITVMLP 353 >gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum NCTC 2916] gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum NCTC 2916] gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 569 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + ++ + I + + Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEKVPLLIGNKDKYNQ 463 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G E +I + Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565 >gi|30021739|ref|NP_833370.1| sensor protein atoS [Bacillus cereus ATCC 14579] gi|229146207|ref|ZP_04274582.1| hypothetical protein bcere0012_33520 [Bacillus cereus BDRD-ST24] gi|296504142|ref|YP_003665842.1| sensor protein AtoS [Bacillus thuringiensis BMB171] gi|29897294|gb|AAP10571.1| Sensor protein atoS [Bacillus cereus ATCC 14579] gi|228637266|gb|EEK93721.1| hypothetical protein bcere0012_33520 [Bacillus cereus BDRD-ST24] gi|296325194|gb|ADH08122.1| sensor protein atoS [Bacillus thuringiensis BMB171] Length = 510 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500 >gi|325660820|ref|ZP_08149448.1| hypothetical protein HMPREF0490_00180 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472894|gb|EGC76104.1| hypothetical protein HMPREF0490_00180 [Lachnospiraceae bacterium 4_1_37FAA] Length = 415 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ I + L ++ ++ ++L Sbjct: 174 KEEAAVMAQNEQLRANLLRAISHDLRTPLTVISGNASNLLSNEDKFDKETKLRLYGDIYD 233 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + SV+ + + + + ++ + E Sbjct: 234 DSMWLINLVENLLSVTRIEDGRLNLKMSVELIDEVTAESIRHLPRKSAEYQIHLKKNDEF 293 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++NL A P G + ++ Q +N S+ NG E Sbjct: 294 LMAKMDVRLILQVIINLIDNALKYTPPGSVIEVASQKKENMVEVSVSDNGPGI-SAEAKE 352 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + T S + + ++ + E H + + L Sbjct: 353 HIFEMFYTGTHKIVDSRRSLGLGLSLCRSIIEAHEGSIRVEDNHPHGCIFTFTLP 407 >gi|304406309|ref|ZP_07387966.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304344893|gb|EFM10730.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 503 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 25/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I L D L S I HD+ +PI I +E + + E + + + Sbjct: 245 LNESIQLQLQYEDNRKQLISNISHDLKTPITTIKGYVEGIRDGLADSPEKLDKYVGTIYA 304 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-------------EDFIAVDKRVQVSWTG 106 + + + +D E+V + RV + Sbjct: 305 KVTDMGRLVDELLLYSKLDLRREPYSFERVDLAAFIEDAVEESGFELEEQGIRVTLEGER 364 Query: 107 EKIDLSRERAK----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160 + + +L NL + + + + + ++ NG Sbjct: 365 LQDTDVMADRQKLRRVLGNLIQNSVKFMDKPDRSITLRLREEGRATLVVEVTDNGAGIAD 424 Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + + E + L K Sbjct: 425 EALPHIFERFYRAEASRNSRTGGSGLGLAIAKQIIEGHGGTIEAESQLGAGTTMRIRLRK 484 >gi|254421559|ref|ZP_05035277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196189048|gb|EDX84012.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 466 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ +S + S I H++ +P+ +H L+ L + E ++ Sbjct: 232 LAQTCNTMISRLSAAWDQQRRFVSDISHELRTPLTLVHGYLQSTLRRSCNLSAPQKEGLE 291 Query: 52 LIRLSSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + I L+ + + + ++ +VI R+ + Sbjct: 292 IAAAEADRTIKLLQELLDLARADSGNFQFKIERESLDDITREVIGICRYATGRIHLKLEP 351 Query: 107 EKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++LLNL A +T++++ N+ +K G + Sbjct: 352 ATALVDRNRLKQVLLNLIDNALKYSIASEPITVTLKKMGNQAYIEVKDTGRGIPPSDLN- 410 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + V L L + V + L Sbjct: 411 KIFDPFYRVDEDRSRATGGTGLGLSIVKTLVEGMNGTLKVQSKLGEGSVFTVSLP 465 >gi|42780657|ref|NP_977904.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987] gi|42736577|gb|AAS40512.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987] Length = 423 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L D Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLRDYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|116747680|ref|YP_844367.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116696744|gb|ABK15932.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 836 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 + S ++ + +L I HD + + AI ++ L + G E + + M Sbjct: 454 QEERIKASKLESIGVLAGGIAHDFNNILTAIIGNISLAKLYGGQGGRVSEKLTEAERACM 513 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSR 113 A + + + +I + D F Sbjct: 514 RAKNLTQQLLTFSKGGEPIKKVIDVSDFLHEAVHFVLTGSNVRSVFFLPDDLWPVQCDEG 573 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD-------------SKNENIFSLKINGNLARF 160 + +++ NL + A ++P GG + IS ++ +K G+ Sbjct: 574 QMGQVINNLIINAKQAMPDGGTIEISAENVILNAGDQALPLKPGRYLRIGVKDYGHGI-P 632 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E T+I D + + + + +++ + E L Sbjct: 633 EEALTRIFDPYFTTKLKGSGLGLATAYSIIKKHEGYIQVESRVGEGAAFHIYLP 686 >gi|329766325|ref|ZP_08257872.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137227|gb|EGG41516.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 365 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 69/220 (31%), Gaps = 13/220 (5%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 F + ++L+ + S++ HDI +P+ + ++L+ + E + + Sbjct: 144 KNFENNRLELIGKMSSKMAHDIRNPLSVLKMQVDLMKLKQKKQEDEIMSSSITRMDKAIS 203 Query: 65 KFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L DI + + + +V ++ + + + + KI Sbjct: 204 DITNQINDVLTFIRQPNLELISCDLKDIINNSIEQLQIPDKVTITQSVDSRMIRCDMTKI 263 Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + ++ G+++I V++++ + +G +I + + Sbjct: 264 KGIITNILHNGIQAINGEGEISIVVEENEKTIDIKITDSGPGIPEN-IMDKIFEPMFTTK 322 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + L K Sbjct: 323 ALGTGLGLASCVQFLDMHGGTIKVKNNP---TTFTITLPK 359 >gi|307634756|gb|ADI83684.2| sensor histidine kinase response regulator, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 754 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 31/245 (12%) Query: 1 MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 M M+ V L I HD + +GAI S EL E E+++++ Sbjct: 366 MQLESQLRHAQKMEAVGTLAGGIAHDFNNILGAIIISTELALDDAKEGASNPELLEIVLN 425 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEK 108 ++ + + + + I + + + Sbjct: 426 AAERGRNLVTQILAFSRQGEQKRQTVRIAPIVKECLKLLRASLPTTIDIRPAISCEDAMA 485 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLK 152 + ++++NL A ++ + T + S+K Sbjct: 486 SIDPTQIHQVIVNLCTNAAHAMHGKVGMLEVTLTAVTLHEDITGTHPDLHAGPYVELSVK 545 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ E +I D + + V + ++ ++ E + Sbjct: 546 DTGHGM-GSEVLERIFDPFFTTKEQGRGTGLGLPVVYGIVKDHGGGIVVESEPGSGTTVR 604 Query: 211 ALLEK 215 L+ + Sbjct: 605 VLIPR 609 >gi|307318241|ref|ZP_07597677.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306896282|gb|EFN27032.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 505 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIR---- 54 + L+ ++ + + S + H++ P+ AI N LL ++ Sbjct: 264 QAELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLRDMDDAVATRIREALEEV 323 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWT 105 + +F+ D + + + + + Sbjct: 324 ASQSLRAGQIIKHLREFVTKGETEKAPEDIRKLVEESAALALVGSREQGVRTVFEYLPGA 383 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + + ++L+NL A ++ + ++ E ++ G E Sbjct: 384 EMVLVDRIQVQQVLINLMRNAIEAMRHVDRRELTIRTMPADPGEVAVVVEDTGGGI-PEE 442 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ V + I + + + + L Sbjct: 443 VAGQLFKPFVTTKASGMGIGLSISKRIVEAHGGEMTVSKNEAGGATFRFTLP 494 >gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 946 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + VQ + + S++ G Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQCAGDYLQISVRDTGEGIPA 628 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + E + + Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687 >gi|115376646|ref|ZP_01463875.1| hypothetical protein STIAU_3979 [Stigmatella aurantiaca DW4/3-1] gi|115366327|gb|EAU65333.1| hypothetical protein STIAU_3979 [Stigmatella aurantiaca DW4/3-1] Length = 722 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 75/240 (31%), Gaps = 28/240 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47 K + L S + ++ L + I H++ +P+ + +LE + V Sbjct: 343 RKQMQARLMLSDRMASMGTLSAGIAHELNNPLSYVIANLEFVHATLQPAEFDPARVPEWR 402 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 +V+ R + ++ ++ + L + + + + + + Sbjct: 403 QVLDEAREGAERVRQIVRQLKTFSRVEEERQEQVELHRVLDSVAQMATSEVKHRARLVKQ 462 Query: 108 KID------LSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGN 156 + ++ LNL + A ++P G + +D + + ++ G Sbjct: 463 YGPLPAITGNDGKLFQVFLNLVINAAHAIPEGCVEDHEIRLATFEDERGWAVVEVRDTGG 522 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++I + + + + L + + E V +L Sbjct: 523 GI-RPENLSRIFEPFFTTKPQGVGTGLGLSICLTLVRAHGGDITVESTVGKGTVFRVMLP 581 >gi|16263123|ref|NP_435916.1| FixL oxygen regulated histidine kinase [Sinorhizobium meliloti 1021] gi|307305157|ref|ZP_07584906.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|120208|sp|P10955|FIXL_RHIME RecName: Full=Sensor protein fixL gi|49404|emb|CAA79897.1| FixL [Sinorhizobium meliloti] gi|14523785|gb|AAK65328.1| FixL oxygen-regulated histidine kinase [Sinorhizobium meliloti 1021] gi|306902497|gb|EFN33092.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 505 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIR---- 54 + L+ ++ + + S + H++ P+ AI N LL ++ Sbjct: 264 QAELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLRDMDDAVATRIREALEEV 323 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWT 105 + +F+ D + + + + + Sbjct: 324 ASQSLRAGQIIKHLREFVTKGETEKAPEDIRKLVEESAALALVGSREQGVRTVFEYLPGA 383 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + + ++L+NL A ++ + ++ E ++ G E Sbjct: 384 EMVLVDRIQVQQVLINLMRNAIEAMRHVDRRELTIRTMPADPGEVAVVVEDTGGGI-PEE 442 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ V + I + + + + L Sbjct: 443 VAGQLFKPFVTTKASGMGIGLSISKRIVEAHGGEMTVSKNEAGGATFRFTLP 494 >gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 454 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 55/238 (23%), Gaps = 28/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H++ +P+ A+ E + ++ Sbjct: 214 AKQEAEAANRAK--SQFLATMSHELRTPLNAVIGFSEAILAGAAGPASLERCVEYMELIH 271 Query: 62 IRLKFMR-------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + +R + +E V Sbjct: 272 SAGQHLRALIEDILDVSRIEAGRTELDEEDCDPTELVRAAARLLEHKSVVSGVDFTVVIA 331 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 R +ILLNL A P GGKV I + + G PE Sbjct: 332 PGLPRMRLDPRRIRQILLNLAGNALKFTPTGGKVGICATLVPDGLALVVSDTGIGI-APE 390 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + V + + + ++ LL Sbjct: 391 HHAKIWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLDSAPGQGTRITVLLP 448 >gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] Length = 725 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/248 (10%), Positives = 70/248 (28%), Gaps = 35/248 (14%) Query: 3 KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + L S + A + + H+I +P+ I LL +++E + I Sbjct: 177 REYNAELKSAKMQAEQANQKKSEFLANMSHEIRTPMNGIIGMASLLKGTPLDEEQREFIE 236 Query: 55 LSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRV 100 + S++ L + ++ + + + ++ ++ Sbjct: 237 MLETSSLSLLDIINDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTKEKGLEFEC 296 Query: 101 QVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKIN 154 + T + + ++++NL A G Q ++ F ++ Sbjct: 297 GLDQNLTPLLVGDAPRLRQVMINLVGNAVKFTQSGKVSVSIRQVAEAGDNITVTFEVEDT 356 Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV- 208 G + T DG++ + + + E + Sbjct: 357 GIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGEIEVESREGEGSRF 416 Query: 209 -LSALLEK 215 + E+ Sbjct: 417 FFTVTFER 424 >gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 586 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 59/230 (25%), Gaps = 28/230 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +PI A+ E L + +Q+I + Sbjct: 351 ERMRSEFVANVSHELKTPIAAVKGFAETLLAGGVKDEETTRSFLQIIYDEGDRLNRLIGD 410 Query: 67 MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + L ++ + ++ V Sbjct: 411 LLELSKIESKRVPLEYAPVQLSELFDSLYEVLLPAAEKKSISMSHDVPEHLFIEADEDRL 470 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQIVDG 170 +I +NL A + GGKV +S + + G + +I + Sbjct: 471 RQIFMNLLSNAISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIGIPKKDLP-RIFER 529 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ + E L Sbjct: 530 FYRVDKARSRSSGGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILELP 579 >gi|237797945|ref|ZP_04586406.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. oryzae str. 1_6] gi|330874562|gb|EGH08711.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965664|gb|EGH65924.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. actinidiae str. M302091] gi|331020796|gb|EGI00853.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. oryzae str. 1_6] Length = 436 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|222095188|ref|YP_002529248.1| sensor histidine kinase, putative [Bacillus cereus Q1] gi|221239246|gb|ACM11956.1| sensor histidine kinase, putative [Bacillus cereus Q1] Length = 423 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|146309327|ref|YP_001189792.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145577528|gb|ABP87060.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 965 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 65/237 (27%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54 M ++ + + + S + H++ +P+ AI SL L++ + +++ + + Sbjct: 475 MDQSEVKRIERLK--SEFVSTVSHELRTPLTAIAGSLGLINGGALGVVPEGMRQMLSIAQ 532 Query: 55 LSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 +S + + + L + + + A + Sbjct: 533 ANSQRLSHLINDLLDMDKLEAGKMQFDLQPCELAGQLEEALASNQAYAAQRQVQLRLLDC 592 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + ++L N A P G+V + + + G+ + Sbjct: 593 PPVRVRVDNMRLQQVLANFISNAVKYSPPAGEVLLRAERRDTRVRVEVSDQGSGIAAAFR 652 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + L ++ + + L Sbjct: 653 -DRIFAKFSQADASDSREKGGTGLGLAISKELIERMGGQIGFDSVVGQGSTFWFELP 708 >gi|89069582|ref|ZP_01156926.1| phosphate regulon sensor histidine kinase, putative [Oceanicola granulosus HTCC2516] gi|89044917|gb|EAR51007.1| phosphate regulon sensor histidine kinase, putative [Oceanicola granulosus HTCC2516] Length = 346 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 19/240 (7%), Positives = 68/240 (28%), Gaps = 35/240 (14%) Query: 9 LSSMDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMS 59 +++++ + + + H++ +P+ A+ +E L + + + ++ + Sbjct: 106 ITALEEAGQMRRDFVANVSHELRTPLTALVGFVETLRGPAKDDAAARERFLGIMEKEAGR 165 Query: 60 AIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107 ++ + + + D+ ++ A + Sbjct: 166 MARLVEDLLSLSRVEEEERLRPATPLPLADLVRDVAELFRPLAARNGLELVVRVPDAPFS 225 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A GG+ +++ +G Sbjct: 226 VPGDAGQVRQVLNNLLENAIKYGTGGGRVELTLSGPRQEPSLRGEGVRLAVRDHGEGIDS 285 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + ++ RL E + +L Sbjct: 286 HHL-ARLTERFYRVDTHRSREVGGTGLGLAIVKHIVNRHRGRLRIESERGKGSRFTVILP 344 >gi|304439016|ref|ZP_07398936.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372505|gb|EFM26091.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC BAA-1640] Length = 593 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 64/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +PI I + E + +V ++ +++I + + + Sbjct: 373 FVANVSHELKTPITTIGSYTETMLDVDMDLDSIRNFLRVIDRENNRMARLVTDLLQLSNM 432 Query: 74 TGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 +I + +V + + + +R ++ N Sbjct: 433 DYKETKWNYEAVDTYDFLSTNINSLDMLIKEKHHKVTLDVPMDINSMYVDRHGADQVFRN 492 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176 +F A +GG++ ++ + ++ NG + + F + + + Sbjct: 493 IFSNALKYTRKGGEIKVTAKSEGASVEIIVEDNGIGIQREDLNKIFERFYRVEKSRSREM 552 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ E ++ Sbjct: 553 GGTGLGLSIAKEILESMGGRISIESEIGVGTKMTLRFP 590 >gi|253698911|ref|YP_003020100.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251773761|gb|ACT16342.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1108 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 67/236 (28%), Gaps = 31/236 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------- 59 S + A+ L I HD + + AI +L E +Q + Sbjct: 734 QSQKMEAIGTLTGGIAHDFNNILTAIIGYTTMLHLELDEAHPLQRKVGEILRASERAASL 793 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 L + R G + +++ +++ I + ++ E++ + + +I Sbjct: 794 TRSLLAYSRRQAGNPAPTGLNAIVNNVDILLQRLIPENIELKSQLAPEELSIMADSGQIE 853 Query: 120 LNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161 + A ++P R + + S+ +G Sbjct: 854 QVIMNLVVNARDAMPEGGVLSLSTESMTLDREFVAKHGYGRPGSYALLSVADSGVGMDER 913 Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + + V + ++ + H V L + Sbjct: 914 TR-DRIFEPFFTTKAPGKGTGLGLAMVYGIVKQHGGFINCYSEPGHGTVFRIYLPR 968 >gi|146309326|ref|YP_001189791.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] gi|145577527|gb|ABP87059.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 640 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56 +I L S + H++ +P+ AI SL L++ +++++ + + Sbjct: 401 SDISERKRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVPENMQQMLEIAQSN 460 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---T 105 S + + + L + + + Sbjct: 461 SQRLRHLIDDLLDMDKLVAGKMRFDLQPLALRPLLQQALHDNQPYAERQQVRLQLLAGSD 520 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ ++L NL A G V +S S++ G K Sbjct: 521 CQVLADAKRVEQVLANLLANAAKFSSPGQPVELSAAPRDGWVRISVRDQGLGIPTSFKPR 580 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L R+ + + L Sbjct: 581 IFSKFAQADAGDTRQQGGTGLGLAISKELIERMGGRIGFDSQEGQGSTFWFELP 634 >gi|91794886|ref|YP_564537.1| osmolarity sensor protein [Shewanella denitrificans OS217] gi|91716888|gb|ABE56814.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] Length = 438 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 10/219 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 MA+++ ALL + I HD+ +P+ I + E++ ++ +++ ++ I Sbjct: 223 MAQSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKEGIVTDIEDMDA 279 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + ++R D + L E + + + E S ++ Sbjct: 280 IINQFIAYIRHDRETPREPDQIHRLIQEIAQQEMHREGEIELDLQDCPEIPMQSVAIKRV 339 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST 175 L NL A K++ + N FS++ NG + E F G+ Sbjct: 340 LSNLVENAFRYGNGWIKISAYSER--NYVCFSVEDNGTGIAADKIDELFQPFTQGDSARG 397 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 398 SMGSGLGLAIIKRIVDRHHGKVKLSNRAQGGLCAKVWLP 436 >gi|52143462|ref|YP_083368.1| sensor histidine kinase [Bacillus cereus E33L] gi|51976931|gb|AAU18481.1| sensor histidine kinase [Bacillus cereus E33L] Length = 347 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 70/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G + Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGAISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + + + V + ++ + E + + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVRI 345 >gi|56961826|ref|YP_173548.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56908060|dbj|BAD62587.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 502 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 K + S L A+ + + + H++ SP+ AI + +L+ ++ I+ Sbjct: 261 RKMEVQLIHSGKLAAIGEMAAGVAHELNSPLTAILGNSQLILRNMNNHDSLFPLLTDIKN 320 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 + + V + + + ++ + Sbjct: 321 CGDRCKRIINSLLTFSRQDDFVFESCSINEAVNETLNLLKYQLEKEKVIIKTELQKDIPF 380 Query: 111 LSRERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +A+I + + + L ++ I +E S+ NG Sbjct: 381 IEGNQAQIEQIIINLLLNAKAALEETLREKKEILIKTSFQFHEVHLSVTDNGIGIEEERL 440 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + I +A + + + L Sbjct: 441 SE-IFHPFHTTKSSKEGTGLGLSVSIGIAKSHGGTIEVHSKWNKGSTFILKLP 492 >gi|238793867|ref|ZP_04637487.1| hypothetical protein yinte0001_24800 [Yersinia intermedia ATCC 29909] gi|238726770|gb|EEQ18304.1| hypothetical protein yinte0001_24800 [Yersinia intermedia ATCC 29909] Length = 904 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + + V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETALNHHHINVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH +G + I + + NG + Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGQGALLGIWAAVQGDWLNVEVWDNGPGVTLGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E D L Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVENNKDGGASFRFTLP 883 >gi|332526668|ref|ZP_08402770.1| histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332111071|gb|EGJ11103.1| histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 598 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 64/246 (26%), Gaps = 35/246 (14%) Query: 2 AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 A+ + L A + + H++ +P+ I +L+L+ + ++ L+ Sbjct: 203 AEAVNTTLQRAKQAADAASIAKSQFLATMSHEMRTPMNGILGALDLMRDTPLDKRQRALV 262 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------------- 98 R + S L + ++ + L + A Sbjct: 263 RTAVASGESLLCIIDDVLDHSTIESGKLKLDPTPMSMHAVAASAAALLRSTAEQRGLKVD 322 Query: 99 -RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKI 153 +++ + + ++LLNL RGG F + Sbjct: 323 LQIEADVPDAVVGDASRLKQVLLNLIGNGIKFTERGGVTLRLSRAPAPPGMCGVRFEVAD 382 Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G ++ + + + R+ + ++ Sbjct: 383 TGIGIPAQAVP-KLFQPFSQVDATRSRSHGGTGLGLSISQRIVAAMGGRITVDSVEGRGS 441 Query: 208 VLSALL 213 S L Sbjct: 442 RFSFTL 447 >gi|320108478|ref|YP_004184068.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319926999|gb|ADV84074.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 858 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 2 AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 + + + L + S I H+I +P+ +I N + LL G + + L Sbjct: 629 EREAALRMTEKLALTGRMTSVIAHEINNPLESITNLMYLLRTEVSKVGPAADYIALAESE 688 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKI 109 + K T +G + + V ++ Sbjct: 689 LLRISGITKQTLRWNRETTGAPERSIVGALFSEVLRLFAGKIRNRQVKVTIRTGEEVSIY 748 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S + +++ NL A + GG V +S +++ + ++ +G Q+ Sbjct: 749 GTSGQLLQVIANLVSNAVDAANVGGNVWLSATETETGAVIEVEDDGIGINAK-VQAQLFK 807 Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + Y +A + L E L Sbjct: 808 PFFSTKGDLGNGLGLYISKEIAERHGGELSVESTVGAGTTFRFSLP 853 >gi|291447256|ref|ZP_06586646.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|291350203|gb|EFE77107.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] Length = 542 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55 + K + + + + + H++ +P+ AI E+L++ + M L+ Sbjct: 293 LEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVS 352 Query: 56 SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + + D + + + Sbjct: 353 ETRRLNDLVENLMEVTRFDAGTARLVLDDVDVADQVTACIDARAWLDAVHLDAERGMMAR 412 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 R IL NL A V + V+ E + ++ +G P F + Sbjct: 413 LDPRRLDVILANLIGNALKHGG--SPVGVRVRTEGEELVIEVRDHGPGIPEEVLPHVFDR 470 Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + AH + + D V + L + Sbjct: 471 FYKASASRPRSEGSGLGLSIAVENAHIHGGDISAANSPDGGAVFTLRLPR 520 >gi|228953917|ref|ZP_04115956.1| hypothetical protein bthur0006_32930 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805885|gb|EEM52465.1| hypothetical protein bthur0006_32930 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 510 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500 >gi|196034278|ref|ZP_03101688.1| sporulation kinase A [Bacillus cereus W] gi|218904768|ref|YP_002452602.1| sporulation kinase A [Bacillus cereus AH820] gi|195993352|gb|EDX57310.1| sporulation kinase A [Bacillus cereus W] gi|218539246|gb|ACK91644.1| sporulation kinase A [Bacillus cereus AH820] Length = 510 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 923 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 62/243 (25%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + K + + V+ + + H+I +P+ I +LLD+ + + Q + Sbjct: 400 LEKAQEVEIERANEVSRAKTDFLATMSHEIRTPLNGILGMAQLLDDSPLSAQQRQWLDAV 459 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102 + S + L + + + L I ++ + Sbjct: 460 AQSGSLLLAILNDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAFLTEY 519 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKING 155 + I + +++LLNL A + + F + G Sbjct: 520 PALPARLIGDPAKISQVLLNLVGNAVKFTHSGEVVLSVNWAPDEQRPDRGRMEFRVTDTG 579 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + ++ E V + Sbjct: 580 IGIARQAVPHVFDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVESTLGCGSVFT 639 Query: 211 ALL 213 +L Sbjct: 640 VVL 642 >gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] Length = 953 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 80/231 (34%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 ++I + + L S + H++ +P+ ++ ELL + ++ ++ I + Sbjct: 569 RDITREHEVDKMKSELVSTVSHELRTPLSSVLGFTELLLNKQLKPEKQERYLKTIYKEAK 628 Query: 59 SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + +E+ + + + Sbjct: 629 RLTNLINDFLDLQRMESGDQVYRMDKLAVNELIIETVEKFRTQNMHSIVFIDDASDVIVE 688 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK------ 163 A++L+NL A P+GG VTIS+++ N ++K G + Sbjct: 689 GDRERIAQVLMNLVGNAIKFSPQGGSVTISMKNDLNNLSVTIKDEGIGIPTEDIPKLFSK 748 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F +I + + I + + +++ ++ E ++ + L Sbjct: 749 FQRIDNSS-RRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGTAVHFELP 798 >gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 775 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K +S M L + I H++ +P+ I ++ + + + + + + + Sbjct: 244 KERQKEVSEMKLRFFI--NISHELRTPLTLILAPVQEMLDKVSDRWLHRQLEHVQKNTNR 301 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------------- 107 L + Y + + L +I + + + Sbjct: 302 LLHLVNQLMDYRRAELGVFNLKVRLNLIHNVVEKNFLFYERLAQRKRIAYNLSSNAEGRE 361 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ +E + +K G+ +K +I Sbjct: 362 IFCDPDYMELIVNNLLSNAFKYTGEGKSITMTLKEENHELLLQVKDTGSGIPI-DKQGKI 420 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + I V L + R+ E + S L Sbjct: 421 FERFYQADNEHLGSGIGLSLVQRLVELHHGRIELESEEGVGSTFSIYLP 469 >gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens DSM 2228] Length = 921 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 62/241 (25%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + S + H+I +P+ +I ELL E + ++ + I + + Sbjct: 389 LKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQETELSEQQQKYINIFQNAG 448 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + I + + + + R+ Sbjct: 449 ESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMISLRAFKKGLELPLRIAAEV 508 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158 I S +IL+NL A +G + + + IF++K G Sbjct: 509 PECVIGDSERIRQILINLLGNAVKFTEKGQVFLDLRIDSEFKSKDQKQVIFAIKDTGIGI 568 Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + L ++ + L Sbjct: 569 EKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQLVELMGGKIWLKSTPQLGSTFYFSL 628 Query: 214 E 214 Sbjct: 629 P 629 >gi|295702577|ref|YP_003595652.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294800236|gb|ADF37302.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 713 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 13/225 (5%) Query: 2 AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 K L S L L + + H+I +P+ ++ + LL E I + + Sbjct: 486 RKKAEEKLRTSEKLAVVGELAAGVAHEIKNPLTSLKGFVHLLKEQHPKDALYIDIMETEL 545 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKI 109 + + ++ K + + + + + V + + Sbjct: 546 ERMNGIVEEFLMLGKPQVMKVESLNMQALVQEVCSLLEPEAVEKEVAFIFERDDQLPKVY 605 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +N+ + ++P GG + I+++ +N L G E+ T+I + Sbjct: 606 GDKNQLKQVFINIIKNSIEAMPEGGAIHITIKVKENHLWLQLADEGQGI-PSERLTKIGE 664 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ D + L Sbjct: 665 PFYSTKEKGTGLGLMVSYRIIKAHHAQMTFSSELDKGTSVDILFP 709 >gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 948 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + V+ + ++ G Sbjct: 572 EPNVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|160937677|ref|ZP_02085037.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC BAA-613] gi|158439322|gb|EDP17074.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC BAA-613] Length = 468 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 58/235 (24%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M+ + + + HD SP+ +I LE + + + ++ + + Sbjct: 233 MSDELNKMEEYQK---NFIANVSHDFRSPLTSIKGYLEAILDGTIPAEMYEKYLSRVISE 289 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105 + + M + + D + D E Sbjct: 290 TERLHKLTESMLTLNSLDARGYLSRTNFDINRVIKDTAASFEGTCESKNVSFDLTFSDDI 349 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162 + +++ NL A + I + S+K G + Sbjct: 350 QMVFADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGRYEKIFVSVKDTGIGIPKDSLKK 409 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ D + V + + + + L + Sbjct: 410 IWERFYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENIDVVSTEGVGTEFIFSLPR 464 >gi|303248593|ref|ZP_07334849.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490034|gb|EFL49956.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 481 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 71/231 (30%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS 56 + + + L ++ L + + H + +P+ I S ++ + + +L+ Sbjct: 239 ERRQDQLVQTKKLSSIGTLTAGVAHQLNNPLNNISTSSQIALDELETADPAFLRKLLANI 298 Query: 57 SMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGE 107 + L+F R V G +++ R+ Sbjct: 299 HQETLRARDIVQGLLEFSRAREFSLRPVPLSELAGRTLRLVSSQGGSGVRLTSDVPDDLV 358 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFT 165 + + LLNL + ++ G+V+ + + ++ G E + Sbjct: 359 IPADASRLQEALLNLLINGIQAVDGKGEVSLAARRDADAGQAVITVSDTGPGI-PEEIRS 417 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + V + ++ ++ + V + L Sbjct: 418 RVFDPFYTTKEEGKGTGLGLSIVYGIVEKHAGKITVDSAPGKGAVFTIRLP 468 >gi|304310075|ref|YP_003809673.1| Two-component sensor [gamma proteobacterium HdN1] gi|301795808|emb|CBL44007.1| Two-component sensor [gamma proteobacterium HdN1] Length = 973 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRL 55 M S L ++ L + + H+I +P+ I + L E + E + I Sbjct: 731 MRLLEQKLTHSERLASIGRLAAGVAHEIGNPVTGIACLAQNLREESEDHETLWAADQIID 790 Query: 56 SSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + D+ + ++ + Sbjct: 791 QTKRISRIVHSLVSFSHSGPRQTEFEPVHLQVVVQEAIDLLYLNKENAEYRFQNDCDSAH 850 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ A++ +NL A + G + I Q S++ I ++ +G+ PE + Sbjct: 851 WVTGDAQKLAQVFINLLGNARDASAPGTTIRIYSQISEHSVITHVEDHGSGI-PPELVER 909 Query: 167 IVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214 I + V + + V + E+ ++ + ++ L Sbjct: 910 IFEPFVTTKEPGKGTGLGMALVYTMVEEHFGQISIASPIHENGTGTRVTVTLP 962 >gi|258626034|ref|ZP_05720890.1| Osmolarity sensor protein envZ [Vibrio mimicus VM603] gi|258581685|gb|EEW06578.1| Osmolarity sensor protein envZ [Vibrio mimicus VM603] Length = 438 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + L NL + Sbjct: 280 YLKPVNREAFEAVDINEIANDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K ++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432 >gi|228916268|ref|ZP_04079838.1| hypothetical protein bthur0012_34840 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928689|ref|ZP_04091725.1| hypothetical protein bthur0010_33830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947254|ref|ZP_04109548.1| hypothetical protein bthur0007_33840 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123156|ref|ZP_04252362.1| hypothetical protein bcere0016_34460 [Bacillus cereus 95/8201] gi|228660249|gb|EEL15883.1| hypothetical protein bcere0016_34460 [Bacillus cereus 95/8201] gi|228812501|gb|EEM58828.1| hypothetical protein bthur0007_33840 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831008|gb|EEM76609.1| hypothetical protein bthur0010_33830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843466|gb|EEM88544.1| hypothetical protein bthur0012_34840 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 516 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 340 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 341 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|153007294|ref|YP_001381619.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030867|gb|ABS28635.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 661 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 74/231 (32%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIE 46 + +++ + L + L + + H++ +P+ A++ ++L +V Sbjct: 423 LVRSLQAAAEHAERLAGIGRLVAGVVHELNNPLTAVNMYSDVLVEKLQNAGHDPADVEKL 482 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVS 103 + + + A + + + + T ++ L + ++ + + V + + Sbjct: 483 RAIREGGQRIQRLARDLVTYAKPSGARTEPLELASVLEEAARLAKPALKEPSAVLERRFA 542 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +NL A ++ GG+V++ + + ++ +G+ Sbjct: 543 PAPTVEGNRPSLVHVFVNLLRNAAQAVGEGGRVSLVLAQEGDAVKVEVRDDGSGMPPAVA 602 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E + ++ L Sbjct: 603 ARAFEPFFTTRPGVGIGLGLPIVQGIVERHGGTVSLESAEGRGTTVTVRLP 653 >gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 1291 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 58/219 (26%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFM---- 67 S + H++ +P+ AI SL L++ +++ + +S + + Sbjct: 1068 FVSTVSHELRTPLTAIAGSLGLINGGALGAVPDNMRQMLAIAHSNSQRLSALINDLLDMD 1127 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L Q + V+ R+QV + ++ A+++ Sbjct: 1128 KLVAGKMHFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDDAQVRVDAQRLAQVMA 1187 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NVEST 175 NL A P G V + +Q S+ +G K Sbjct: 1188 NLLSNAAKFSPPGTCVDVRLQHGGEVLRVSVTDSGPGIPEAFKPRIFSKFSQADSGDTRQ 1247 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 1248 QGGTGLGLAICKEIIERMGGHIGFDSSPGQGATFWFELP 1286 >gi|42780529|ref|NP_977776.1| sporulation kinase B [Bacillus cereus ATCC 10987] gi|42736449|gb|AAS40384.1| sporulation kinase B [Bacillus cereus ATCC 10987] Length = 402 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQQLQIEEELLHALSLITPLANLTNVRIHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+F ++P GG + +++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNIFKNCIEAMPTGGDLVLTLVPEHKHIQLYIKDTGIGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|217978820|ref|YP_002362967.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217504196|gb|ACK51605.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 666 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 21/222 (9%), Positives = 61/222 (27%), Gaps = 22/222 (9%) Query: 14 LVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAII------ 62 L+ + I H++ P+ AI + L E EV + + Sbjct: 440 LLGQFAASIAHEVNQPLAAITTYAQSGRRWLTREAPAAQEVRDCLDHIVENGRRASEVVA 499 Query: 63 -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAK 117 + + + + ++ +A ++ + + + + Sbjct: 500 GLKALTKKGAAPKNPLPLAEAIEEAVALMRRELATGAINLRQSFAADLPPVLGDRVQIQQ 559 Query: 118 ILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++NL M ++ + + S++ +G+ + + + Sbjct: 560 VVINLAMNGAQAMAAIDPRRRDLCVATQREGAGFARISVRDSGDGI-KEQNPDAVFEPFF 618 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E DD L Sbjct: 619 TTKTSGTGMGLSICRSIVEAHGGRIWAENNDDGGATFHFTLP 660 >gi|170739551|ref|YP_001768206.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168193825|gb|ACA15772.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 628 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 67/234 (28%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54 + + + + L AL + + I H++ P+ A+ + LL+ ++ L + Sbjct: 387 LREAQAGLVHAEKLAALGQMSAGIAHELNQPLTAVRTLSDNAKVLLERNRLQAATANLSK 446 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SW 104 +S +S + S + + + + VD+ +++ S Sbjct: 447 ISELSEHMGQIVAHWKRVARKSEPITGIVSARQSISNALLIVDRSMKLKEINIVTKIPSE 506 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162 ++++NLF A ++ I V ++ + NG Sbjct: 507 DVILKCDPNRLEQVIINLFSNAVDAVANVHHPEIVVSVSRHQDRGAICVHDNGPGISDS- 565 Query: 163 KFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L Sbjct: 566 VMPHLFEPFFTTKEAGSGLGLGLAISADIVAAMGGTIHAHDRPEGGAEFILDLP 619 >gi|328883820|emb|CCA57059.1| Two-component system, sensor protein [Streptomyces venezuelae ATCC 10712] Length = 519 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSS 57 + S V + H++ +P+ +I EL G E + I + Sbjct: 270 SALDARQQSETRVRQFVADASHELRTPLASIRGYAELTRRGGEECGPDTRHALGRIESEA 329 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGE 107 ++ + L D+ ++ D + Sbjct: 330 TRMTGLVEDLLLLARLDAGRPLSYEPTDLLPLVVDAVSDARAAGPGHHWSLELPEDGAPP 389 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164 ++L+NL A P G KVT V+ I ++ +G P F Sbjct: 390 VRADGARIQQVLVNLLANARTHTPPGTKVTARVRTDGAGVIVQIEDDGPGIPPELLPAVF 449 Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ S + V + + + E V + L Sbjct: 450 ERFARGDASRSRNAGSTGLGLAIVRAVVGAHGGDVDVESAPGR-TVFTVRLP 500 >gi|324325573|gb|ADY20833.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 423 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 57/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------I 109 + + + + + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISINYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|288555371|ref|YP_003427306.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus pseudofirmus OF4] gi|288546531|gb|ADC50414.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus pseudofirmus OF4] Length = 722 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 61/226 (26%), Gaps = 15/226 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + + LV L + H+I +P+ I +++ + ++ Sbjct: 490 EQELIRSEKLQLVGQLAAGFAHEIRNPLTTIRGFMQIFHQSDATKDEHKVHYDVMIKEID 549 Query: 59 SAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + L + + + + + R+QV Sbjct: 550 RVNSIIGELLQMANPKSGTSKTETNIGEVLTDIHTLYEPEANEQGIKMRLQVEPLPTVYL 609 Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++++NL ++ G + + + ++ G P+ ++ Sbjct: 610 DRSKLHQVVMNLVKNGLEAIDGSGSLALSAYENTEREIIEIKVEDTGIGMN-PQTMEKLG 668 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E +LL + L Sbjct: 669 TPFFTTKETGTGLGLMTSFRIVEEIGGKLLVTSKEGVGTTFMIQLP 714 >gi|262045482|ref|ZP_06018504.1| sensory box sensor histidine kinase/response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037175|gb|EEW38424.1| sensory box sensor histidine kinase/response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 360 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 66/221 (29%), Gaps = 18/221 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS----AIIRLKFM 67 M V L + HD + + I SLEL++ + + ++ L F Sbjct: 1 MKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAERGVLLTQRLLAFS 60 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM--- 124 R + +V L ++ +++ + +++ + ++ L Sbjct: 61 RKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWIDVGQLENALINLVM 120 Query: 125 VAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 A ++ +VT S ++ + +G+ ++ + + Sbjct: 121 NARDAMAGRGGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGMSQV-VKARVFEPFFTT 179 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V ++ R+ E + L + Sbjct: 180 KATGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 220 >gi|206978279|ref|ZP_03239157.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217959034|ref|YP_002337582.1| sensor histidine kinase [Bacillus cereus AH187] gi|229138250|ref|ZP_04266846.1| hypothetical protein bcere0013_13720 [Bacillus cereus BDRD-ST26] gi|206743528|gb|EDZ54957.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217067887|gb|ACJ82137.1| sensor histidine kinase [Bacillus cereus AH187] gi|228645282|gb|EEL01518.1| hypothetical protein bcere0013_13720 [Bacillus cereus BDRD-ST26] Length = 423 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 57/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------I 109 + + + + + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISINYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|153005300|ref|YP_001379625.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028873|gb|ABS26641.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 375 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 67/241 (27%), Gaps = 29/241 (12%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +++ + L A+ + + + H+I +P+ A L +L+ E + +++ Sbjct: 133 KRDLSRRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRVQRLEKSAQGALLEP 192 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQV 102 + L + + + + + D+ + AV + Sbjct: 193 LTLVRDEIRRLDHILEDFLQFARPREFVAKPVEVGVLVNRVLDLLGAQAERRAVRLERDL 252 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153 ++L+N + A + R D + + Sbjct: 253 ETVAAVAGDEERLRQVLVNFGLNALEAVKDGGLVRVSCREAPPASGRPDGPRQVAIVIDD 312 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +G E +I + + + V + ++ + + + L Sbjct: 313 DGPGV-PAESRDRIFEPFFTTKAKGSGLGLSIVHAIVTQHGGTITVSESPEGGARFTLEL 371 Query: 214 E 214 Sbjct: 372 P 372 >gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426] gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 542 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 80/238 (33%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQ 51 M + + + + L SR+ H+I +P+ + +LL+ + V + Sbjct: 153 MEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLNGVLGFAQLLEMDPSLKGRQREFVQE 212 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------------AVDKR 99 ++ + + + + LA TG + + + +I++ I + R Sbjct: 213 ILGGARHLLNLINEMLDLARIETGRLPLTYDVVHPDDIIKESIKLVEPLANKKNIDIQAR 272 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 S + ++LLNL A GG V I + + + + +K NG Sbjct: 273 SSFSEQVYLYTDATRVRQVLLNLLDNAIKYNRDGGTVLIEGKYDQEKVVIHVKDNGIGI- 331 Query: 160 FPEKFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ I + + +D + I +V + + + S L Sbjct: 332 PDEEQENIFEPFYRIKGTHVDGNGIGLAFVKQIIRLLGGTIEVKSKLGVGSDFSFSLP 389 >gi|320156972|ref|YP_004189351.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio vulnificus MO6-24/O] gi|319932284|gb|ADV87148.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio vulnificus MO6-24/O] Length = 595 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L + + I H++ +P+ AI + + L E V + + Sbjct: 357 LRLTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSR 416 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S K + + + L E + + ++ + Sbjct: 417 ISALTERMAKISQQLRSFARKSAGDELVEARLMPVLLSANELMKPSLKSARVQLGTDFPE 476 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160 I L ++ L A ++ + + + + + NG Sbjct: 477 HDIHLVINTIQLEQVLINLITNAIEAMENTEAKQLRITVDRALEQQICVHIDDNGPGI-D 535 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P KF Q+ + + + + + +L + +L Sbjct: 536 PAKFAQLCEPFHTTKKNGLGLGLSISQQILAGMNGKLQVSHSPLGGARFTIMLP 589 >gi|310639570|ref|YP_003944328.1| sensor protein [Paenibacillus polymyxa SC2] gi|309244520|gb|ADO54087.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 717 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 12/221 (5%) Query: 5 ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIR 54 S L V L + + H+I +P+ + L+L + I + I Sbjct: 493 EELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQQNQVLNMKHNDIMMSELDRIN 552 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113 L +I K + F + + + + + +QV Sbjct: 553 LIVSEFLILAKPQAVHFQKKDVRYIVSDVISLLDSQAHLLGIVFNLQVTDEPALVYAEEN 612 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ +NL + ++ +GG +TI + ++ G E +++ + V Sbjct: 613 QLKQVFINLLKNSMEAMSKGGIITIHLFLEGESVKIFIRDQGTGI-PAEMLSKLGEPFVT 671 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K L E + L Sbjct: 672 NKETGTGLGLMVSQRIIQSHKGTLDIESTEGEGTTALVQLP 712 >gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] Length = 683 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + + S + H++ +P+ AI +LL+ G++D + ++ + + L + Sbjct: 432 RANKAKSEFLSSMSHELRTPMNAILGFSQLLELEGLDDRHLTYVKGIKSAGVHLLALIDE 491 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRER 115 I L I + + Sbjct: 492 VLDLAKIESGRIDLQPEWIDICTVVEECINLVKIQADGQDIKLTHSGMADKVLYTDRIRF 551 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFTQIVDGNVE 173 +I+LNL A +GG V I +++S N + +G + Sbjct: 552 KQIILNLIHNAIKYNRKGGWVHIELKNSDNPGYLKIIVIDSGIGIAANRLTQ-LFQPFNR 610 Query: 174 -----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I+ I + R+ E L Sbjct: 611 LDAAGSAIEGTGIGLSLTRRIIEMMGGRIGVESELGVGSTFWFELP 656 >gi|229179925|ref|ZP_04307271.1| hypothetical protein bcere0005_32720 [Bacillus cereus 172560W] gi|228603606|gb|EEK61081.1| hypothetical protein bcere0005_32720 [Bacillus cereus 172560W] Length = 510 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 61/227 (26%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTTIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++ GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMQNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500 >gi|169832051|ref|YP_001718033.1| histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638895|gb|ACA60401.1| histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 772 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLS 56 + I N + + +L L S I HD + + I +L+L E + ++ + Sbjct: 381 RRWIQENSRAEKMRSLGILTSGIAHDFNNLLAVIIGNLQLAREKTTDRFLQANLEQAYTA 440 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + A ++ ++ + L+ + ++ + G I++ ++ Sbjct: 441 ARDASALVRRVQEFYRPAAREFRLVSVSELVRDAVTLTRNRWHNAALAEGVHIEIVQDLR 500 Query: 117 KILL-------------NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPE 162 N+ + A ++ G VTI D+ + S+ +G Sbjct: 501 SAAFVSGAASALRDALVNILINAFDAVNGRGGTVTIRTWDTGSSINVSVSDDGCGIPPEA 560 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + +L Sbjct: 561 LPYVFDPFFTTKGERGSGLGLGITHNIITAHGGSIGVQSTPGQGTTFDIVLP 612 >gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] Length = 570 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL DE + M L++ ++ Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRYVYMSLVQENN 395 Query: 58 MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + ++ G +D ++ L D V++ + Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDTAVELRFDENSPQ 455 Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L N A +G + +++ F + G +K Sbjct: 456 IVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +S + + L + ++ E + Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVNRMGGKIGVESREGEGSCFWFT 563 >gi|197118785|ref|YP_002139212.1| response receiver sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088145|gb|ACH39416.1| response receiver sensor histidine kinase response regulator, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 773 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 70/243 (28%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 +A + + M+ + L I HD + + I+ LL D+ + + I + Sbjct: 378 LAIDQLRQVQKMEAIGQLAGGIAHDFNNLLTVINGYSTLLVRSLDKGSPTHKEAEQILRA 437 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKI 109 A + + ++ + + ++ + + G Sbjct: 438 GERAADLTRQLLSFSRRQIMEPRVLDINKQVRAVQKMLERLIGEHIGLVTTLSEDAGFIR 497 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154 + +I++NL + A + GG +T++ + + S+ Sbjct: 498 MDPGQMEQIVMNLIVNARDASETGGVITMATEKVDLDQNFSHLHPGSVPGSYVRLSVADQ 557 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E ++ + + + V + ++ + + Sbjct: 558 GQGM-TEEVKQRLFEPFFTTKEMGRGTGLGLATVYGIVKQSGGYIEVVSEPGQGACFNIY 616 Query: 213 LEK 215 L + Sbjct: 617 LPR 619 >gi|116623028|ref|YP_825184.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226190|gb|ABJ84899.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 684 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 21/236 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + ++ + S + ++ L + HD + + I+ ++ L EV + IR Sbjct: 307 LRESQERYMQSQKMESIGRLAGGVAHDFNNILTVINGYSDIVYHQLSEVDPRRAQVNEIR 366 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R G V+ + + E+++ + D R+ Sbjct: 367 KAGAHAAELTQQLLAFSRKQVGRPRPVNLNSVVSEAEKMLRRILGEDVRLITRLDPSTGL 426 Query: 111 LSRER---AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++L+NL + A ++P + S+ S+ G+ Sbjct: 427 ILADPGYVHQMLMNLAVNARDAMPDGGSLVIETSDAQRHDEEGSRIAVCLSVTDTGSGMD 486 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + +++ + L + Sbjct: 487 EETRKNIFEPFFTTKGTKGTGLGLATVYGIVQQSQGSIEVLTEPGKGSTFRVYLPR 542 >gi|46200837|ref|ZP_00207864.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 794 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 70/245 (28%), Gaps = 32/245 (13%) Query: 2 AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 +N+ S + A+ L + HD + + A+ +LL + + ++ Sbjct: 405 QRNLEMQFAQSQKMQAMGQLAGGVAHDFNNLLTAMIGFCDLLLQRHGAGDPSFADIMQVK 464 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108 ++ A ++ + L+ + D + + + + Sbjct: 465 QNANRAASLVRQLLAFSRRQALQPRLLNVTDALAELSNLLRRLLGETIELRMVHGRALGL 524 Query: 109 -IDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152 + ++++NL + A ++P + + + + + + Sbjct: 525 VRVDPGQFDQVIINLAVNARDAMPGGGALTIRTNTVHVDQPVQRGPELMPAGDYVQIEVA 584 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E +I + + + V + + + E + S Sbjct: 585 DTGTGI-GKENLARIFEPFFSTKEVGAGTGLGLSTVYGIVRQTDGFIFVESEPGQGTIFS 643 Query: 211 ALLEK 215 L + Sbjct: 644 IYLPR 648 >gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 589 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + E+ Q+I Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410 Query: 56 SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S+ + + + + V ++ Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALHHDISL 470 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E + + ++ NL A GG V+ISV K+ +K +G+ + Sbjct: 471 TEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + D + + Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIP 586 >gi|312883424|ref|ZP_07743150.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122] gi|309369040|gb|EFP96566.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122] Length = 963 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H+I +P+ + + +LL + G++ + + + + S Sbjct: 459 ARKEAEQANRAKSAFL--ATMSHEIRTPMNGVLGTAQLLKDDGLDSKQRHYVDVINRSGT 516 Query: 62 IRLKFMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ + + + + + ++ Sbjct: 517 TLLAILNDVLDYSKIEAGFIDIRPINFDIHSMIKDTCELVGARAQEKNLKLDYFIESDVE 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + A++L NL A D + +F + G E+ Sbjct: 577 QYWHGDATRLAQVLNNLVGNAVKFTDAGHVDLYVALNPDYEGYILFEVTDTGCGIDEVEQ 636 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + + + + + Sbjct: 637 STLFEPFTQASNGISSKGGTGLGLAISKRIVEAMGGEMFFDSTLGVGSRFGFTIP 691 >gi|294338507|emb|CAZ86835.1| Sensor protein kdpD [Thiomonas sp. 3As] Length = 914 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 79/236 (33%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51 A++ + + + L S + HD+ +P+ A+ + E+L D + + + Sbjct: 657 AQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLVAHPPGDAATLHSQALS 716 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSW 104 L++ S A + + +A +G V +E+++ + +Q+ Sbjct: 717 LLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDL 776 Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-- 159 + + + ++L+NL A P G + + + E ++ G Sbjct: 777 PADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAG 836 Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F G+ ES I + + + R+ + + L Sbjct: 837 RERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892 >gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 570 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL DE + M L++ ++ Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 395 Query: 58 MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + ++ G +D ++ L D V++ + Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDTAVELRFDENSPQ 455 Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L N A +G + +++ F + G +K Sbjct: 456 IVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +S + + L + ++ E + Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVNRMGGKIGVESREGEGSCFWFT 563 >gi|197106737|ref|YP_002132114.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] gi|196480157|gb|ACG79685.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] Length = 643 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 57/235 (24%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ L + + H+I +P+ + E++ + + + + S Sbjct: 241 LESARDAANAANVLKTQFLANMSHEIRTPLNGVLAMAEVMALGELAPLQRERLDVIRRSG 300 Query: 61 IIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAV---------DKRVQVSW 104 + L + + +D L + D + + V Sbjct: 301 GLLLAVLNDVLDLSKIEAGKLTLLDEDFELEPELDQVRDNFRIVALGKGLGFEVTVAEEA 360 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161 G + +I+ NL A +GG + G P Sbjct: 361 QGWWRGDADRLRQIVGNLLSNAVKFTMQGGVRAHVDLTPAGALRIVVSDTGVGIAPEKLP 420 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + L + E + + L Sbjct: 421 TLFEKFTQADNSATRRFGGTGLGLAICRELTQMMGGSIDVESREGDGSTFTVELP 475 >gi|167629027|ref|YP_001679526.1| sensor histidine kinase domain protein [Heliobacterium modesticaldum Ice1] gi|167591767|gb|ABZ83515.1| sensor histidine kinase domain protein [Heliobacterium modesticaldum Ice1] Length = 659 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 66/217 (30%), Gaps = 12/217 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII----- 62 L ++LVA + + I H+I +P+ + L++L + L Sbjct: 424 RLDRLNLVAQMAAGIGHEIRNPMTTVRGFLQILRAKDELANHWEHFDLMIEELDRANAII 483 Query: 63 -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 K + L + + R+++ E +E + Sbjct: 484 SEFLSLAKHKVDDLRLQNLNAIIRALYPLLEADASLGKKAIRLELGPIPETYLGEKEIRQ 543 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 ++LNL ++ GG++ I + + ++ G+ P+ Q+ + Sbjct: 544 LVLNLVRNGLEAMGEGGELIIRSYREGDAVVLAVCDQGSGI-SPDALAQLGTPFFTTKEQ 602 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ R+ E + Sbjct: 603 GTGLGLAVCQNIVVRHRARMTVE-TGEQGTTFFVHFP 638 >gi|220925301|ref|YP_002500603.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949908|gb|ACL60300.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 641 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 71/242 (29%), Gaps = 29/242 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 K + L + + AL L + HD + + AI SLEL + Sbjct: 261 QKQLEARLRQADKMQALGTLAGGVAHDFNNLLTAIMGSLELALPKVAGDARLSRLMTNAA 320 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Q + + L F R VD + ++ ++ + +V + + Sbjct: 321 QAAQRGAALTKRLLSFSRQRELQARVVDLNGVIRGMDDLLGRSLGGFVQVDHDLSPDLWP 380 Query: 111 LSRERAKI---LLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKING 155 + ++ +LNL + ++P + + ++ G Sbjct: 381 ARVDPEQLELAILNLCINGRDAMPEGGVVTISTRNVSVTGSPDPDLPDGDYAVIAIADTG 440 Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +++ + + + V L ++ + + + L Sbjct: 441 TGI-PPEILSRVFEPFFTTKAQGQGTGLGLAMVFSLLQQSGGTIRIDSEVGRGTRVELYL 499 Query: 214 EK 215 + Sbjct: 500 PR 501 >gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 421 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54 + K+ L + + I H+I +PI +I ELL++ + + + I Sbjct: 184 LKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMGKLNNNQKMCLNTIL 243 Query: 55 LSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + + + + VD L + ++ + ++ + Sbjct: 244 ENVIRLGRLVSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAPIALKKHIKLSLEIP 303 Query: 106 GEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPE- 162 ID ++R ++ N+ A P KV I+ ++ ++ + S+K NG E Sbjct: 304 NITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDILISIKDNGIGISKNEF 363 Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + + ++ E + L K Sbjct: 364 EKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESELNQGSTFYISLPK 420 >gi|197117813|ref|YP_002138240.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087173|gb|ACH38444.1| sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 653 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 70/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIR 54 + L + + A+ L + H+I +P+ AI +++++ + E + Sbjct: 413 LEATFDELLVAKKVAAVGHLALGLAHEIRNPLSAIQMNMQMIRKKIEPTGVLCENFSIAD 472 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 LK + + + L + V + E Sbjct: 473 GEIQRLNRLLKDVLDFARPRPLRLQTVDLAEIVRRLLQLVDQRLAQYGVTPTTDIESPLE 532 Query: 108 KIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++LLNL + A ++ + + +++ + +G P+K Sbjct: 533 LVCDPEQIHQVLLNLVLNAMEAMDGVAGDRTLKVIAYRKESQAYVLVSDSGRGI-GPDKC 591 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ D + + + + + + + + +L Sbjct: 592 EQLFDPFYTTKVSGGGLGLSILQTIVLSHGGSVSVTGGTGAGATFTVVLP 641 >gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 790 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 67/244 (27%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDE----------VGIED 47 MA+ + L S I H++ +P+ I SL+L++ Sbjct: 511 MAQKQQLIHEMQECDRLKTEFFSNISHELRTPLNVILGSLQLMNLYTNKEASMTYPNNLS 570 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103 + + ++R +S + + + + I + I + + Sbjct: 571 KHVGIMRQNSYRLLRLVNNLIDMTKIDSGFCEMQLQNHNIVSIVEEITLSVAAFIENRQI 630 Query: 104 --------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + +I+LNL + GG++T+ +++ + + S+K G Sbjct: 631 TLLFDTEVEERMIACDPDKIERIILNLLSNSVKFTNYGGQITVYIEEIEGNVVISIKDTG 690 Query: 156 NLARF---PEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 F + + + I L + + Sbjct: 691 IGIETEKLDMIFQRFRQADDLLTRRNEGSGIGLSLAKSLIELQGGTISVTSEYGRGSEFT 750 Query: 211 ALLE 214 Sbjct: 751 VTFP 754 >gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 938 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + + L S + H++ +P+ ++ ELL + + + ++ I + + Sbjct: 579 MKSELVSTVSHELRTPLSSVLGFTELLLAKEIKPERQKKYIETIHKEAKRLTNLINDFLD 638 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---------LSRERAKILL 120 + + + + ++ +D ++L Sbjct: 639 IQRIESGQQVYSMNKISLTALIEDVLKNFQIDPQHNIRFVDESTNAIVSADEERIIQLLF 698 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE--ST 175 NL A P GG++ I +Q+ S++ G F + + Sbjct: 699 NLIGNAIKFSPNGGEIIIRMQNINETVQVSIQDCGIGIPESAIPSLFQKFKRVDNSSRRK 758 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++K + E + + L Sbjct: 759 IGGTGLGLALSKEIISKHKGDIWLESEEGIGTTIFFTLP 797 >gi|317496244|ref|ZP_07954604.1| hsp90-like protein [Gemella moribillum M424] gi|316913819|gb|EFV35305.1| hsp90-like protein [Gemella moribillum M424] Length = 647 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 62/227 (27%), Gaps = 22/227 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64 S + H++ +P+ +++ +E L+ + + + + I + I + Sbjct: 412 RQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVINDKELAPQFIDTIHKETNRMIRMV 471 Query: 65 KFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + +D + I E ++ + + Sbjct: 472 NELMQLGKMDIKEEHYEKEFIDINKLIEQISNRFELTHPEKNFIKHTSKTPIFVEGDQDK 531 Query: 117 --KILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ N+ A P + + + N S+K G Sbjct: 532 LTQVFDNIMNNAIKYSPNGKNITIRVRQNYNHNRVNISIKDEGVGIPLVHIDKIFNRFYR 591 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + +K R+ + + + ++ L Sbjct: 592 VDKSRQRSMGGTGLGLALAKNIIEAHKGRIWAQSREGYGTIIFVTLP 638 >gi|295107890|emb|CBL21843.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. [Ruminococcus obeum A2-162] Length = 226 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 14/226 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + F + + L S H+I +P+ I + L++L + + + + + Sbjct: 1 MQEKNKFEQQKKEFQSTL-SMFSHEIRNPLALITSELQMLSDHHPQLCLDEHWDNIMENL 59 Query: 61 IIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + Y + + ++ L Sbjct: 60 NYIRELLDEISRYQNAGHLSLVSTDTSLWLDRIANTFRPALDYLGIALETDIPKNLPHLE 119 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLKINGNLARFPEKFTQIV 168 ++ KI LF + + ++ + ++ NG E+ QI Sbjct: 120 LDQTKIRQALFNLLRNAQEAIQHAHGKIRIIASAVSDGIQITVHDNGCGM-TAEQLEQIF 178 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + L E + LL Sbjct: 179 FPFVTYKPGGTGLGLAVTRQIIEAHHGTLRVESVPGEGTTFYILLP 224 >gi|255091520|ref|ZP_05320998.1| two-component sensor histidine kinase [Clostridium difficile CIP 107932] gi|255313248|ref|ZP_05354831.1| two-component sensor histidine kinase [Clostridium difficile QCD-76w55] gi|255515938|ref|ZP_05383614.1| two-component sensor histidine kinase [Clostridium difficile QCD-97b34] Length = 389 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGIE 46 K L L I HD+ +P+ +I S +ELL + + Sbjct: 146 KKANLEAERERLRGNLLRSISHDLRTPLTSILGSSSTILENDDVIDKETRVELLKNIYED 205 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + +S + VD +I + K Sbjct: 206 TSWLTHSVENILSMTRIDEGKLDIEKRPEVVDEIIAESILRVKKFANSRDIKTNIPDEII 265 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++L+NL A P+ K+ ++V+ N+ +F + NG + Sbjct: 266 IVHVDVLLIEQVLVNLIDNAIRHTPKNSKIELTVKKESNQVLFEVADNGKGIPNEDIGNI 325 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + N ++ + + + ++ + Sbjct: 326 FNRFYTKNKSRNLERRGIGLGLEICKSIVEAHGGEIVAFNNPSGGATFRFSIP 378 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 60/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + + H++ SP+ I LL + ++ + + Sbjct: 1048 AVLSHELRSPLNPILGWARLLQTREFQPAEIKKAIATIERNAKLQAQLIEDLLDVSRILQ 1107 Query: 71 ------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLF 123 V + + ++ + + + + + ++ +R +++ NL Sbjct: 1108 GKLNLKMFPVNLVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWNLL 1167 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDS 178 A P GK+ I ++ ++ ++ G + DG Sbjct: 1168 SNAVKFTPEEGKINIQLERIDSQAQITVSDTGKGISPEFLPHVFEYFRQADGTTTRRFGG 1227 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V L + + E + + L Sbjct: 1228 LGLGLAIVRHLIELHGGTIWAESLGEGQGAIFRVRLP 1264 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 57/237 (24%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + L+ +D + S + H+ +P+ + LE L + +L + Sbjct: 338 ERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPLEETLANCATLLPAHEREQLEMVQ 397 Query: 60 AIIR------LKFMRLAFGYTGSVDSLIGLGDIEQVI-----------EDFIAVDKRVQV 102 + + G V + ++ E Sbjct: 398 RNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVERAGMELSVNCP 457 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 S KI+LNL A G + F++K G E Sbjct: 458 SLPAPVYVDREMWEKIVLNLLSNAFKFTMTGKIAVSLQWAND-HIEFAVKDTGIGIPAEE 516 Query: 163 KFT---QIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G T + I V L + + + + + Sbjct: 517 IPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAGSCFTISIP 573 >gi|126698101|ref|YP_001086998.1| two-component sensor histidine kinase [Clostridium difficile 630] gi|254974120|ref|ZP_05270592.1| two-component sensor histidine kinase [Clostridium difficile QCD-66c26] gi|255099626|ref|ZP_05328603.1| two-component sensor histidine kinase [Clostridium difficile QCD-63q42] gi|255305510|ref|ZP_05349682.1| two-component sensor histidine kinase [Clostridium difficile ATCC 43255] gi|255649030|ref|ZP_05395932.1| two-component sensor histidine kinase [Clostridium difficile QCD-37x79] gi|260682221|ref|YP_003213506.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260685820|ref|YP_003216953.1| two-component sensor histidine kinase [Clostridium difficile R20291] gi|115249538|emb|CAJ67354.1| Two-component sensor histidine kinase [Clostridium difficile] gi|260208384|emb|CBA60898.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260211836|emb|CBE02241.1| two-component sensor histidine kinase [Clostridium difficile R20291] Length = 535 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGIE 46 K L L I HD+ +P+ +I S +ELL + + Sbjct: 292 KKANLEAERERLRGNLLRSISHDLRTPLTSILGSSSTILENDDVIDKETRVELLKNIYED 351 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + +S + VD +I + K Sbjct: 352 TSWLTHSVENILSMTRIDEGKLDIEKRPEVVDEIIAESILRVKKFANSRDIKTNIPDEII 411 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++L+NL A P+ K+ ++V+ N+ +F + NG + Sbjct: 412 IVHVDVLLIEQVLVNLIDNAIRHTPKNSKIELTVKKESNQVLFEVADNGKGIPNEDIGNI 471 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + N ++ + + + ++ + Sbjct: 472 FNRFYTKNKSRNLERRGIGLGLEICKSIVEAHGGEIVAFNNPSGGATFRFSIP 524 >gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306] gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 631 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 294 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E V + Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 354 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ + ++ + S+ +G+ Sbjct: 355 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 414 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473 >gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 599 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 50/219 (22%), Gaps = 25/219 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFG 72 S + H++ +P+ AI E L E + ++ L + A Sbjct: 366 SMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSDLDRIITAGRHLLTLINDILDYARL 425 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSRERAKILLN 121 +V + +I + + + + ++LLN Sbjct: 426 EANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDLPPVLADPVRLRQVLLN 485 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VEST 175 L A +G + + E + G + + Sbjct: 486 LVGNACKFTGQGEIRVHCYRSTTAEIQIDVSDTGIGIAADQL-QHLFKPFVQVDNGPTRR 544 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L +L S L Sbjct: 545 YGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTFSVRLP 583 >gi|329939380|ref|ZP_08288716.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] gi|329301609|gb|EGG45503.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] Length = 595 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 +A+ L + + + + H++ SP+ I + LE + + +++ L+ + Sbjct: 364 LAERREL-LEAQR--TSMVNDVAHELRSPLTNIRSWLEAAQDGIAPTDRQLLDLLFDEAG 420 Query: 59 SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + +R + D L + ++ + V + V Sbjct: 421 ALQHIIDDLRDLAAADTGELALHYEMVRVADILDQVVAGQRSRAEHAGVALEIHVDEDKH 480 Query: 108 KIDLSR-ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++ +++ NL A P GG+++++ + +E ++ G+ + Sbjct: 481 EVCADPLRLRQVIGNLVGNAVRHTPSGGRISLTCRHLGDEVRIEVRDTGSGIAPEDLPHI 540 Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + L + + + + + Sbjct: 541 FDRFWRAEKSRNRRTGGSGLGLSIARKLTEAHGGTITVRSTLAEGTTFTVAVPR 594 >gi|317501464|ref|ZP_07959662.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897093|gb|EFV19166.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 894 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + S L A L I HD+ +P+ +I S L D+ + + Sbjct: 653 KEEAAVFAKSEQLRANLLRAISHDLRTPLTSISGSAGNLMANYNKMDDEMRKQTFADIYD 712 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108 S + + + V+ + +++V + + ++V + E Sbjct: 713 DSMWLINLVENLLAVTRIEGERVNLNQTIELMDEVIAEALKHINRKGKEYTIKVDSSEEL 772 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I + ++++NL A P G + I Q S+ NG E+ T Sbjct: 773 ILAKIDVKLVVQVIINLVDNAIKYTPSGSIIHIHTQKQGKWVEVSISDNGPGI-PDEQKT 831 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + S + + + + + + L Sbjct: 832 KIFDMFYSGANKIADSRRSLGLGLSLCKSIVTAHGGMISVSDNQPKGTIFTFTLP 886 >gi|312792509|ref|YP_004025432.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179649|gb|ADQ39819.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 458 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 73/237 (30%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50 +AK + + + S H++ +P+ I+ + L+D G D+ + Sbjct: 221 LAKTFNEMIERLKISFEKQNQFVSDASHELRTPLSVINGYINLIDRWGKNDKEVLQESIV 280 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQV 102 ++ + L R G ++ L + + I + + Sbjct: 281 AIKNEVKYMTELVERLLFLARGDSGVIKLQKEVVNLNQLVEEIVKEGKLVAPNRNWSYNL 340 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + R ++L + + GG + ISV+ ++ +K NG E Sbjct: 341 KGRIDIFADGRLMKQMLRAIIDNSIKFTQEGGTINISVEKHLDKVKIVVKDNGIGIPREE 400 Query: 163 K---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V + + +L E +S LL Sbjct: 401 IGKIFDRFYRVDKVRSKTTGGSGLGLSIVKWIVEAHNGEILVESELGKGTEVSVLLP 457 >gi|251787895|ref|YP_003002616.1| osmolarity sensor protein [Dickeya zeae Ech1591] gi|247536516|gb|ACT05137.1| histidine kinase [Dickeya zeae Ech1591] Length = 470 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 + S + L+A LL + + HD+ +P+ I + E++ + E + Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSQEDEYLAESINKDIEE 276 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ D LG++ + Sbjct: 277 CNAIIEQFIDYLRTGQEMQMEVADLNAILGEVVASESGYEREIDSELARGELLMKVSPLS 336 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171 + + NL + A +V+ + F ++ +G F V G+ Sbjct: 337 IKRAVANLVVNAARYGNGWIRVSSGRELQ--RAWFQVEDDGPGIDPSQLAHLFQPFVRGD 394 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + + A L Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHNGSLDVGSSERGGLRVRAYLP 437 >gi|229071148|ref|ZP_04204374.1| hypothetical protein bcere0025_33220 [Bacillus cereus F65185] gi|228712088|gb|EEL64037.1| hypothetical protein bcere0025_33220 [Bacillus cereus F65185] Length = 510 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500 >gi|297567023|ref|YP_003685995.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296851472|gb|ADH64487.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 475 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 62/211 (29%), Gaps = 20/211 (9%) Query: 23 CHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM-------RLAF 71 H++ +P+ AI + L + E ++++R + + Sbjct: 258 SHELRTPVTAILGHVSYLLRRTPLTEQQRESLEIVRREGERMKKLVGDLLELSKTGGTWR 317 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKILLNLFMVAHAS 129 V L +I + R+Q+ + ++ N+ A + Sbjct: 318 VELSPVHLHTLLAEIAEEYGQSFPQGGRIQLEVPEDLWVLGDVERLHQVFANMVSNAQKA 377 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID--SHDIQFY 184 + ++ + +D + + ++ NG P F + + + + Sbjct: 378 --QASEIRLVARDLQERVVIRVEDNGEGIPPEHLPHLFERFYRVDKARDRERGGSGLGLS 435 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + + E V S L + Sbjct: 436 IVKAIVEAHGGSVWVESEVGRGSVFSVSLRR 466 >gi|220933265|ref|YP_002512164.1| PAS/PAC sensor signal transduction histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219994575|gb|ACL71177.1| PAS/PAC sensor signal transduction histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 505 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 20/223 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSA 60 LVA+ L + + H++ +P+G+I +LL + + + + + S Sbjct: 277 REKLVAMGQLAAGVAHELNTPLGSILGYSQLLIDSCEDPQRARHFARTISEQTKRCSRII 336 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSRERA 116 L + R D + ++ + + + + E Sbjct: 337 HNLLNYARKEKCQGEFCDVNALVDEVVDTLISCRLKRYEISLERDLKDSPIVDGGCGELD 396 Query: 117 KILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 +L NL + A +L K I V + ++ NG E ++I + Sbjct: 397 IVLTNLLINAVQALKGVEKPMIRVSTGLNEGGFAYIIVEDNGPGI-PGELRSRIFEPFFS 455 Query: 174 ST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + L Sbjct: 456 TKDVGEGSGLGLSISHAMVSRRGGTLRYDSDYRDGARFVIRLP 498 >gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 876 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 55/247 (22%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRL 55 + + L L + + I H++ +P+ AI +L + + + Sbjct: 612 TEELRVALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTDQPLTPTQREDIQ 671 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S L + +++ +I V I + V ++ Sbjct: 672 SINRNGRFLLHLINELLDLARIEAGHLNLEISNVNLYNITSEVCDTVQTLLRNRPVTLRN 731 Query: 116 ----------------AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSL 151 +IL NL A R S+ Sbjct: 732 AVPVTLPDIAADGDRLRQILFNLLSNAIKFTERGTITVSARVHDEVNEDGKVGRYVAVSV 791 Query: 152 KINGNLARFPEKFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + + S + + L R+ + Sbjct: 792 SDTGIGIPLERQHEIFNEFVQIHGRRSRLSGTGLGLAITRKLVLAQGGRIWVDSTPGIGS 851 Query: 208 VLSALLE 214 + + Sbjct: 852 TFTFTIP 858 >gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437] Length = 463 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M N L + + S + H+I SP+ +I + L + +E + + Sbjct: 228 MMANSLERLEA--MRQEFVSNVSHEIQSPLASIQGFSQTLRTESLPEEEREQYLSIIENE 285 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + S+D D + + + W +L+ + Sbjct: 286 SRRLSSLSKQLLMLASLDKEETALDQTEFDVAAQIREVLRMLEWNWRDKELAIKTDLPPT 345 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE--- 162 ++ NL A GG +T+++ D + ++ G + Sbjct: 346 RIRADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDDFEEGGIEVKVRDTGVGIPGEDLPH 405 Query: 163 KFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + E + L Sbjct: 406 IFERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHGGTISVESEPGAGTGIRVWLP 461 >gi|300689765|ref|YP_003750760.1| sensor histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Ralstonia solanacearum PSI07] gi|299076825|emb|CBJ49437.1| sensor histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Ralstonia solanacearum PSI07] Length = 937 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55 A++ + S L L + + HD+ +P+ + E L +Q + Sbjct: 691 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLAGMAETLLRTQPPLPPLQAEAAEAIGEQ 750 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----DKRVQVSWTGEKIDL 111 + + + +A V + IE+++ + V V + Sbjct: 751 AQRMRAMVTNLLDMARLQNRDVKLRLEWQSIEELVGAALKATPLPAHPVVVDDLADLPLQ 810 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLAR---F 160 + + L + + T +E ++ +G Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVEHDAAHGDEMRVRVRDHGPGVPAGTE 870 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ ES + + + R+ E D L Sbjct: 871 RIIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPVDGGACFVVALP 924 >gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1108 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLS 56 K + + + + H++ +P+ +I ++L+ + + + Sbjct: 849 KANELAAQAEYANKSKSEFLANMSHELRTPLNSIIGFSDILNGETFGKLTQKQEKYTANI 908 Query: 57 SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + S L M + I + ++D + Sbjct: 909 NKSGKHLLYLINEILDLSKIEAGKMEFVCDDFKLNSVFSDIESIISLQAQKKSIDLEISK 968 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP 161 S E + +I+ NL A G+V++S + ++K G Sbjct: 969 SVDIEINADKSKIKQIIFNLLSNAIKFTDENGRVSMSARKVDRDRVEIAVKDTGIGI-PE 1027 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +KF I D + + V ++ + E + Sbjct: 1028 DKFETIFDPFMQVDASTSRKYGGTGLGLALVKKYVEKHGGEVWVESEIGKGSTFMFTIP 1086 >gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] Length = 946 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + VQ + + S++ G Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQCAGDYLQISVRDTGEGIPA 628 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + E + + Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687 >gi|317132921|ref|YP_004092235.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] gi|315470900|gb|ADU27504.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] Length = 476 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIR--------LKF 66 S + H++ +P+ AI E + + + M++I + Sbjct: 260 SSVSHELRTPLTAIKGWAETIQGCAPGDTDTIHKGMRVITDETGRLSAMVEDLLDFSRMQ 319 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLNL 122 +D L +G+ + D + + + ++ +N+ Sbjct: 320 SGRFRMAIDKIDILAEMGEAVLMFSDRAHREGLTFIYNEPASLPPMMGDRNRLRQVFVNI 379 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179 A GG V + D N + G + + GN Sbjct: 380 LDNAFKYSDAGGVVKVDAIDCGNHVRIIVSDTGCGIPARDLSRVKQKFFKGNATRR--GS 437 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + L + ++ L Sbjct: 438 GIGLAVADEIVCLHGGTLEIASEEGKGTAVTITLP 472 >gi|259505959|ref|ZP_05748861.1| sensor histidine kinase [Corynebacterium efficiens YS-314] gi|259166440|gb|EEW50994.1| sensor histidine kinase [Corynebacterium efficiens YS-314] Length = 471 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 60/242 (24%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCS------------RICHDIISPIGAIHNSLELLDEVGIEDE 48 +A + L + ++L + H++ +P+ ++ EL D Sbjct: 226 LANALNIMLEQLQ-ASILSAQEKESQMRRFVGDASHELRTPLTSVKGYSELYHSGATRDA 284 Query: 49 V--MQLIRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + I + + ++ + VD L + + Sbjct: 285 DWVLSKISGEAQRMSVLVEDLLSLTRAEGQQMEKRPVDVLELSLSVASSMRAAWPERSIT 344 Query: 101 QVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 V+ TG + + ++L NL V I + + + +G Sbjct: 345 VVNKTGSLPVVEGDATRLHQVLTNLVNNGLNHGGPDASVEIEISAEGGSVLVRVVDDGVG 404 Query: 158 ARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L ++ + + V + Sbjct: 405 MTAEDAQHIFERFYRTDTSRSRASGGSGLGLAITKSLVEGHRGTITVDSEVGEGTVFTIT 464 Query: 213 LE 214 L Sbjct: 465 LP 466 >gi|255261966|ref|ZP_05341308.1| alkaline phosphatase synthesis sensor protein PhoR [Thalassiobium sp. R2A62] gi|255104301|gb|EET46975.1| alkaline phosphatase synthesis sensor protein PhoR [Thalassiobium sp. R2A62] Length = 344 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 19/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++I + + + + + H++ +P+ A+ +E L + D + ++ + Sbjct: 103 QDITASREAEQMRRDFVANVSHELRTPLTALLGFIETLSGAARDDAAARDRFLSIMGTEA 162 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----------VIEDFIAVDKRVQVSWTG 106 ++ + +++ + + + Sbjct: 163 GRMSRLVEDLLSLCRVEEDQRVRPTDTVELMGLIQSAADTLKTSRPYMSRNCDILGPESC 222 Query: 107 EKIDLSRERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E + + +++LNL A + R + + + G+ Sbjct: 223 EITGDADQLRQVMLNLIENALKYGYANSAVIVRVATTSHDRALGQAAVKIDVTDTGDGIE 282 Query: 160 FPEK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + ++ +L S LL Sbjct: 283 PHAIGRLTERFFRVDSHRSREMGGTGLGLAIVKHIVDRHRGKLRISSEKGVGSTFSVLLP 342 >gi|228934915|ref|ZP_04097746.1| hypothetical protein bthur0009_33690 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824815|gb|EEM70616.1| hypothetical protein bthur0009_33690 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 510 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 918 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L+NL A G + ++S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|165870457|ref|ZP_02215112.1| sporulation kinase B [Bacillus anthracis str. A0488] gi|227815814|ref|YP_002815823.1| sporulation kinase B [Bacillus anthracis str. CDC 684] gi|254753786|ref|ZP_05205821.1| sporulation kinase B [Bacillus anthracis str. Vollum] gi|164713952|gb|EDR19474.1| sporulation kinase B [Bacillus anthracis str. A0488] gi|227003232|gb|ACP12975.1| sporulation kinase B [Bacillus anthracis str. CDC 684] Length = 402 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGAGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397 >gi|164686355|ref|ZP_02210385.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM 16795] gi|164601957|gb|EDQ95422.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM 16795] Length = 433 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++I + ++ + + H++ +P+ +I +E L + + + +I S Sbjct: 195 EDITELVKLENMRKDFVANVSHELKTPLTSITGFVETLKINDDIDKNTRNHFLDIIEKES 254 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTG 106 ++ + L D + V ++ + + + Sbjct: 255 NRLKGLIEDILLLSSIENGQDLSYEKVKLFDVFKEVCEITEYIASSKNITISYNFEDEDV 314 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164 +I LNL P+ G + + + I K NG E Sbjct: 315 CIYGFRDNIKQIFLNLIDNGIKYTPKDGHIEVVQHYDENRQNIILEFKDNGIGI-PKESL 373 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + I + + + E I + Sbjct: 374 NRIFERFYRVDKARSRDIGGTGLGLAITKHMVKSLGGNITVESILGIGSDFIVTIP 429 >gi|77917797|ref|YP_355612.1| two component signal transduction histidine kinase/response regulator hybrid [Pelobacter carbinolicus DSM 2380] gi|77543880|gb|ABA87442.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 749 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 31/243 (12%) Query: 3 KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56 KN+ L + + A+ L + HD + + I + L + ++ I + Sbjct: 368 KNLQKQFLHAQKMEAMGRLAGGVAHDFNNLLTVISGYSQYLLQKYSDEALQGCLEQIVKA 427 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111 A + + L + +E + V + Sbjct: 428 GEQAASLTSQLLAFSRRQVMQTKEMDLNGVTADMEKMLHRILGADVDLVVLRDPRLGLVN 487 Query: 112 --SRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKIN 154 + ++++NL + A ++P GGK + + + S+ Sbjct: 488 ADRGQIEQVIVNLAVNARDAMPEGGKLTIETINIELDEIYSTWHTGLAPGHYVMMSVTDT 547 Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G PE +I + + + V + ++ + Sbjct: 548 GIGM-DPEIMGKIFEPFYTTKETGKGTGLGLSTVYGIVQQSGGHIYVYSEPGMGTTFKIY 606 Query: 213 LEK 215 L + Sbjct: 607 LPR 609 >gi|329765965|ref|ZP_08257527.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137514|gb|EGG41788.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 540 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 84/226 (37%), Gaps = 17/226 (7%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQL 52 K L + L + L R+ HD+ +P+ I SL+LL + + + ++L Sbjct: 315 KKTQELLKAERLSTIGELSGRLAHDLRNPLSVIKISLDLLKQSPADTKISDDVTTKRLEL 374 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 I S ++ + + S + I + I+V +++ +G +++ Sbjct: 375 IESSVERISHQIDDVLDYVRNSPLKLSRRSIRKIILGSIEKISVPHNIKILVSGLDAEIN 434 Query: 113 RERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + KI +NL + + + P GG + I ++ ++ I +G+ E QI + Sbjct: 435 CDYIKIDAAFINLILNSIQANPEGGTIEIKIKSDHDDVIIDFIDSGSGI-PDEVMNQIFE 493 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + +K ++ + + L K Sbjct: 494 PLFTTKQQGTGLGLASCKNIVELHKGKITVKNNP---TTFTVRLPK 536 >gi|239943793|ref|ZP_04695730.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|239990246|ref|ZP_04710910.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 11379] Length = 509 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55 + K + + + + + H++ +P+ AI E+L++ + M L+ Sbjct: 260 LEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVS 319 Query: 56 SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + + D + + + Sbjct: 320 ETRRLNDLVENLMEVTRFDAGTARLVLDDVDVADQVTACIDARAWLDAVHLDAERGMMAR 379 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 R IL NL A V + V+ E + ++ +G P F + Sbjct: 380 LDPRRLDVILANLIGNALKHGG--SPVGVRVRTEGEELVIEVRDHGPGIPEEVLPHVFDR 437 Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + AH + + D V + L + Sbjct: 438 FYKASASRPRSEGSGLGLSIAVENAHIHGGDISAANSPDGGAVFTLRLPR 487 >gi|228996990|ref|ZP_04156622.1| hypothetical protein bmyco0003_15730 [Bacillus mycoides Rock3-17] gi|228762731|gb|EEM11646.1| hypothetical protein bmyco0003_15730 [Bacillus mycoides Rock3-17] Length = 393 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 15/226 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58 K S L L + I H+I +P+ A+ + LL + + ++ Sbjct: 163 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMHLLKSSENKKNEHYIDIVLSEIE 222 Query: 59 SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++ +T + + Sbjct: 223 RIESITNEFMALAKPQTLEIKTNDLNVLMKQVVMILQPQAMMNNIQITTEFTSDTSFILC 282 Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ + ++ + I KN+ G + Sbjct: 283 EGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPDKNQVNIRFTDYGCGIEKDRIPY-LG 341 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + +++ ++L E ++ L Sbjct: 342 EPFYSIKEDGIGLGLMICYKMIEKHQGKILIESEVGKGTTINVNLP 387 >gi|229004655|ref|ZP_04162392.1| hypothetical protein bmyco0002_16080 [Bacillus mycoides Rock1-4] gi|228756543|gb|EEM05851.1| hypothetical protein bmyco0002_16080 [Bacillus mycoides Rock1-4] Length = 638 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 15/226 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58 K S L L + I H+I +P+ A+ + LL + + ++ Sbjct: 408 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMHLLKSSENKKNEHYIDIVLSEIE 467 Query: 59 SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++ +T + + Sbjct: 468 RIESITNEFMALAKPQTLEIKTNDLNVLMKQVVMILQPQAMMNNIQITTEFTSDTSFILC 527 Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ + ++ + I KN+ G + Sbjct: 528 EGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPDKNQVNIRFTDYGCGIEKDRIPY-LG 586 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + +++ ++L E ++ L Sbjct: 587 EPFYSIKEDGIGLGLMICYKMIEKHQGKILIESEVGKGTTINVNLP 632 >gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 764 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 54/225 (24%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72 A L + H+I +P+ + ELL + +++E S L + Sbjct: 218 AFLA-NMSHEIRTPMNGVVGMAELLCDTELDEEQRLYASTIKNSGEALLVIINDVLDYSK 276 Query: 73 --------YTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKIL 119 + D L ++ +++ + ++L Sbjct: 277 IEADKLELHPEPFDLERCLHEVVMLLQPTARDKGIALLVDYDLFLPTRFTGDPGRIRQVL 336 Query: 120 LNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 NL A G S D + +++ G + + N Sbjct: 337 TNLAGNAVKFTKEGHVTLRVTGITSPDDKQCAVHVNIEDTGIGIPQEKISHIFGEFNQVE 396 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + + L Sbjct: 397 DERNRQFEGTGLGLAISKRLIEMMGGEIWVDSEEGKGSCFGFRLP 441 >gi|56479283|ref|YP_160872.1| histidine kinase [Aromatoleum aromaticum EbN1] gi|56315326|emb|CAI09971.1| Histidine kinase [Aromatoleum aromaticum EbN1] Length = 766 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 63/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56 +A++ L AL L + + H++ +P+ + +L+E IR++ Sbjct: 393 LARHRESLHQREKLAALGSLLAGVAHELNNPLSVVVARAVMLEEQGDPATQAAAAKIRIA 452 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111 + ++ + + ++ V + + Sbjct: 453 AERCARIVRTFLAMARQQQPERVSVAINEVVSAALDITSYAVRTSGIDVSLDLADNLPAV 512 Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEK 163 + ++ LNL + A +L + + + NG Sbjct: 513 LADTDQLHQVFLNLIINAQQALQDQPGPRRIRLTSRYDPTGDVIRIIVADNGPGIPAG-L 571 Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + L + + + L Sbjct: 572 RARVFEPYFTTKPVGVGTGVGLAVCLGIVEAHGGTLTVDCPVEGGAEFTIALP 624 >gi|67920146|ref|ZP_00513666.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67857630|gb|EAM52869.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 415 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 71/237 (29%), Gaps = 23/237 (9%) Query: 2 AKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSS 57 ++ L + S + HD +P+ I S LL++ + ++ + ++ Sbjct: 149 RTTQLLKAQELNQLKSEFVSMLSHDFRNPLNTILLSTGLLEDSYEQLTREQQLSYFQMIR 208 Query: 58 MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + +D + I + ++ +++ G Sbjct: 209 NAVHDMNQLLSEVLLLGKADSGKLKTNFIELDIQLFCKQIIHSLHLSFEDKNQIILNFDG 268 Query: 107 EKI-----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF- 160 + + IL NL A P+GGK+ +++ + FS+K G Sbjct: 269 DFPSELELWDEKLLWHILHNLLNNALKYSPQGGKIFLNIIAEEKTVTFSIKDQGIGISQE 328 Query: 161 --PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + V + E D+ +L + Sbjct: 329 SQQHLFETFYRADNVGNISGTGLGLSIVRKCVEAYNGNIFVESELDNGTTFRVILPR 385 >gi|186685045|ref|YP_001868241.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467497|gb|ACC83298.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 449 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 M + + +L + L + H+ +P+ IH+S ELL+ + ++ I+ Sbjct: 209 MRQALAKEREFSELKSRLLTTASHEFRNPLTTIHSSAELLEHYRHLWSDERQQIHLRRIQ 268 Query: 55 LSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S M L + + ++ + D+ + +E + S Sbjct: 269 TSVMHITQLLNDLLVLNQDETGKLEFNPTPLNLVEFCRDLLEELEQSDRSQHAIVFSSEC 328 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + +IL NLF P G V SV + IF + +G + Sbjct: 329 QCPSANLDAKLLRQILTNLFSNCLKYSPIGSTVKFSVTTANERAIFQTQDSGIGIPPADI 388 Query: 164 ---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I + V + ++ E D + +L Sbjct: 389 EHIFEPFHRASNTGNIPGMGLGMSIVKQGVDLHGGEIIVESAIDAGTTFTVILP 442 >gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 870 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 50/225 (22%), Gaps = 18/225 (8%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 + + L + + + H+I +P+ AI +LL + E + LI + + Sbjct: 642 AMQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLNAFSKEEVQEFVGLINTNCTLLLA 701 Query: 63 RLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110 + + + DI + +++ Sbjct: 702 LINDILDLSRIEAGTMEFNLAEFNLNYIMQDIYDSQYLSMPQGVELRIECPVEEGKSIHT 761 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++ NL A +G D ++ G Sbjct: 762 DIVRLKQVVNNLVNNAKKFTVQGSITIGYTVDEPEYTTVYVEDTGKGIPEEAAKHIFERF 821 Query: 171 NVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + Sbjct: 822 YKVDNFVQGAGLGLSICQTIVEHLRGTISVFSQVGRGTRFEVRMP 866 >gi|308273268|emb|CBX29871.1| hypothetical protein N47_F15660 [uncultured Desulfobacterium sp.] Length = 665 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 58/233 (24%), Gaps = 27/233 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLK 65 M+ LL + HD + + I EL + ++ I +++ ++ + Sbjct: 291 QKMEAAGLLAGGVAHDFNNMLNVILGYTELAMDKTDTDLPLHADLEEIHKAAIRSMDITR 350 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDLSRERAKI 118 + + ++ L + + + + + +I Sbjct: 351 QLLTFARKQTIIPVVLNLNQTVESMIKMLRHLMGEDIDLAWLSGADPCPIKMDPSQIDQI 410 Query: 119 LLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKINGNLARFPEK 163 L NL + A ++ G + + + S+ +G Sbjct: 411 LANLCVNARDAITGVGKVTIETGNAVFDEIYCAGHTGFVAGEYVLLSVSDDGCGMDKEIL 470 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + V + +N + L + Sbjct: 471 NQIFEPYFTSKEIGQGTGLGLSTVYGIVKQNNGFINVYSEPGKGTTFRIYLPR 523 >gi|293370846|ref|ZP_06617391.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|299148649|ref|ZP_07041711.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|292634062|gb|EFF52606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298513410|gb|EFI37297.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 654 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + + L + + + H+I +P+ AI +L + E ++LI ++ Sbjct: 421 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYVELIGTNT 480 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----T 105 + + Y +D L +IEQ ++ + + Sbjct: 481 DLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTFTFAERLSQ 540 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N + A G F + G E+ Sbjct: 541 CTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCGM-SSEQCI 599 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + ++ E ++ L Sbjct: 600 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650 >gi|237721425|ref|ZP_04551906.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229449221|gb|EEO55012.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 632 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + + L + + + H+I +P+ AI +L + E ++LI ++ Sbjct: 399 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYVELIGTNT 458 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----T 105 + + Y +D L +IEQ ++ + + Sbjct: 459 DLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTFTFAERLSQ 518 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N + A G F + G E+ Sbjct: 519 CTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCGM-SSEQCI 577 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + ++ E ++ L Sbjct: 578 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628 >gi|228913013|ref|ZP_04076653.1| hypothetical protein bthur0012_2580 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846633|gb|EEM91645.1| hypothetical protein bthur0012_2580 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 314 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 63/237 (26%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + I + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E I + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 308 >gi|164687351|ref|ZP_02211379.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM 16795] gi|164603775|gb|EDQ97240.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM 16795] Length = 438 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 +N+ + ++ + + H++ +PI +I +E L + ++ + +I + Sbjct: 196 ENVTEYVKLENMRKEFVANVSHELKTPITSIKGFVETLKMTDNLDDDTKNRFLTIIENEA 255 Query: 58 MSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + V+ + E+V E + K+ + E + Sbjct: 256 TRLTRLIDDILLLSTIENKTKKKVEKVDLFEVFEEVHEVVNYIAKKKNIKVKYEFKNKYI 315 Query: 114 ERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +ILLN+ A G V I + +K NG + + Sbjct: 316 DLWEYSGYIRQILLNIISNAIKYTGENGSVNIKQYIKAKKVFIEVKDNGIGIPQEDI-ER 374 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + ++ + + + E L Sbjct: 375 IFERFYRVDKARSRSVGGTGLGLAITKHMVKALNGNIKVESELGVGSKFIIELP 428 >gi|163939802|ref|YP_001644686.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163861999|gb|ABY43058.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 357 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 74/233 (31%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + L + + + +K +++ +K+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ K S+ G + Sbjct: 240 CVTADKESMSQVWINLIHNSIKFTPNGGMITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ ++ E ++ + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 352 >gi|116624965|ref|YP_827121.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228127|gb|ABJ86836.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 633 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 + + ++ + +L I HD + + I ++E+ L E++ + Sbjct: 253 LMEEELLRARKLESLGVLAGGIAHDFNNFLTIIRGNIEVAMERLQPDDPVQEIVAETATA 312 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDL 111 A + + V L + DI + V V + Sbjct: 313 CRRAELLASQLLTFAKGGAPVRRLASVKDIVTDAVQLLRAGSSVSVDVSIAADLRFAYLD 372 Query: 112 SRERAKILLNLFMVAHASL--------PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +++ NL A ++ V D+ +++ G + Sbjct: 373 AGQIGQVIHNLLRNAREAMGEGGIIEVRAENVVCPDAIDTDPRVRIAIRDYGRGI-PADI 431 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + V + +++ +L E + V + L Sbjct: 432 RPRIFDPYFTTKPGASGLGLATVYAIVAKHEGHILVESMPGVGSVFTVDLP 482 >gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 918 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L+NL A G + ++S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 570 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL DE + M L++ ++ Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 395 Query: 58 MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + ++ G +D ++ L D V++ + Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDTAVELRFDENSPQ 455 Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L N A +G + +++ F + G +K Sbjct: 456 IVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +S + + L + ++ E + Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVNRMGGKIGVESREGEGSCFWFT 563 >gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 918 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L+NL A G + ++S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDESGRERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|297570521|ref|YP_003691865.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926436|gb|ADH87246.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 528 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 69/245 (28%), Gaps = 35/245 (14%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 M + + L + + A+ L I HD + + AI ++L+ D+V Sbjct: 144 MERRL---LQAQKMAAIGNLAGGIAHDFNNILTAIGGYVQLILLKSGNDQRISQDADQVR 200 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I+ ++ L F R S+ + + +++ I ++ S I Sbjct: 201 AAIKRATDLVSQLLTFSRQTEHPKKSIQVAPVVQEALKLLRASIPASIELRQSLDSAAII 260 Query: 111 --LSRERAKILLNLFMVAHASL-----------------PRGGKVTISVQDSKNENIFSL 151 + ++++NL A S+ + +++ + + Sbjct: 261 LGDPTQLHQVVMNLATNASHSMLEGGGTLGVSLREIAIEEYERRPQLTMLPTGRYLCLEV 320 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G E +I + + + + + + Sbjct: 321 SDTGCGM-TQEIVGKIFEPYFTTKEIDQGTGLGLSVAHGIVSSHGGTINVYSEPGQGTTF 379 Query: 210 SALLE 214 L Sbjct: 380 QVYLP 384 >gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2] gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2] Length = 948 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +++ NL A G + + VQ S + ++ G Sbjct: 572 DPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCSGDYLSIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689 >gi|225175908|ref|ZP_03729900.1| multi-sensor hybrid histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168496|gb|EEG77298.1| multi-sensor hybrid histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 678 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 26/239 (10%) Query: 1 MAKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLI 53 + K + + L + L A+ L + HD + + + +L + +D ++ I Sbjct: 298 LRKRMEEDVLQATKLEAVSVLAGGVAHDFNNLLTVVLGNLSIAKMYAAKDTQILHKLKEI 357 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ + + ++ L D Q F+ V VS++ Sbjct: 358 ENAAQQTKELTRQLLTLSKGAALSKKVVSLEDFLQETASFVVRGTNVNVSFSFADDLPPV 417 Query: 114 E-----RAKILLNLFMVAHASLPRGGKVTIS-------------VQDSKNENIFSLKING 155 + ++++ NL + A ++P GG + I + + S+ G Sbjct: 418 DIDAGQFSQVMNNLLINAIQAMPEGGTIRICAETLNIIHNGLLFMLEPGRYIKISVSDEG 477 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + + ++ L E + L Sbjct: 478 GGIAPEDLS-KIFEPFFTTKEEGTGLGLVTSYNIVRQHGGHLAVESEVGAGTTFNIYLP 535 >gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 686 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 67/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 A+++ S + + + + H++ +P+ I +LL + + E + Sbjct: 161 ARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTPLNPEQRTYVEAFR 220 Query: 58 MSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQ 101 S + + G +D D+ + + + + + Sbjct: 221 TSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIA 280 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL---KINGNLA 158 T ++ + +IL+NL A GG + + + + + G Sbjct: 281 DDLTALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARAGEGQREGFVLTIEDTGPGI 340 Query: 159 RFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G ++ + + L + + +L Sbjct: 341 PEERIPILFEEFEQGEDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSIFRVVLP 399 >gi|330957178|gb|EGH57438.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 418 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 193 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 249 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 250 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 309 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 310 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 369 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 370 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 408 >gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 909 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53 MA+ + +L L + + H+I +P+ AI EL+ ++ ++E M +I Sbjct: 533 MAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPAEKEEYMSII 592 Query: 54 RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-Q 101 + ++ + + + L + Q V+ ++ Sbjct: 593 QSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKITNPDVEFQMDN 652 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 S ++ +N A G + + + ++ +G Sbjct: 653 SSPDCWIFLDRSRLKQVWMNYLTNAVKCTKS-GYIKMGYSIEREGIRIYVEDSGVGI-PE 710 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + A + Sbjct: 711 ELQERVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTFWAWIP 765 >gi|255526545|ref|ZP_05393454.1| histidine kinase [Clostridium carboxidivorans P7] gi|296187651|ref|ZP_06856045.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|255509795|gb|EET86126.1| histidine kinase [Clostridium carboxidivorans P7] gi|296047608|gb|EFG87048.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 472 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 20/230 (8%) Query: 5 ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61 + L + + L + S + H+I +P+ + +E L + +E Q+ I Sbjct: 237 LAETLQNQEMLRKRMTSDMAHEIRTPLTTLKTHVEALLDGIWEPTEERFQVFYDEIERLI 296 Query: 62 IRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKID 110 + ++ + + L E + + Sbjct: 297 NLVNKLQNLAKLEQADLKLNSTKFNLSEELKKTISNFEPLYLKNNYTIEAKIYKDIWVYM 356 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + +I+ NL ++ L GKV + +++ + +K NG + F + Sbjct: 357 DRDKLKQIMHNLLSNSYKYLKSNGKVVVELKE-EEGICIKVKDNGIGIPEKDLPYIFERF 415 Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ I L + ++ E + K Sbjct: 416 YRTDLSRTKNTGGSGIGLTITKSLVECHNGKISVESKEKEGSTFVVWFPK 465 >gi|229089400|ref|ZP_04220672.1| hypothetical protein bcere0021_2490 [Bacillus cereus Rock3-42] gi|229182668|ref|ZP_04309910.1| hypothetical protein bcere0004_2520 [Bacillus cereus BGSC 6E1] gi|228600808|gb|EEK58386.1| hypothetical protein bcere0004_2520 [Bacillus cereus BGSC 6E1] gi|228693934|gb|EEL47625.1| hypothetical protein bcere0021_2490 [Bacillus cereus Rock3-42] Length = 314 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + K S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 72 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 131 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + I + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E I + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 308 >gi|219852596|ref|YP_002467028.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546855|gb|ACL17305.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 761 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 25/231 (10%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55 S+ +L A + S HD+ P+ +I + ELL+ + ++ + ++ Sbjct: 525 EKLMASNEELQRYAYVAS---HDLQEPLRSIVSFSELLNRRYRGKLDKDADEYIRFIVDG 581 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++++ T + I + + V V + Sbjct: 582 GVRMQNLIKDLLQVSRIETQAQPFAPTDARTVVADSIRSLETPIHEISAVVTVDPLPIVM 641 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ NL A I++ + + FS++ NG E F +I Sbjct: 642 ADPSQLEQVFTNLIGNAIKYRRPEVPPVITISAERYGDWWEFSVRDNGIGI-ESEFFDRI 700 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + R+ E L Sbjct: 701 FEMFRRLHTIDEYEGTGIGLAIVKRIVERHGGRIRVESKPGEGSTFFFTLP 751 >gi|196229114|ref|ZP_03127979.1| integral membrane sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196226346|gb|EDY20851.1| integral membrane sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 1040 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 30/238 (12%) Query: 5 ICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE----LLDEVGIE----DE 48 L +L L + + H++ P+ AI ++ + L++ + Sbjct: 786 ERARLQDAELARVGRVSLLGELSASLAHELSQPLAAILSNAQAALRFLEDEPADVAETRA 845 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVS 103 ++ I S A ++ MR + + + + D + V Sbjct: 846 CLRDIAASDQRASEIIRHMRSMMKKGEAQLEPRDINLDIEGVLALLHSDLVTRQVVVTTE 905 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTI-----SVQDSKNENIFSLKING 155 + + + ++ L + ++ + +D S+ +G Sbjct: 906 LQPDLPSVRGDHIQLQQVLLNLIVNSGDAMRSADPEARSIVVSTRRDGAGLVRVSVADSG 965 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P+K +I D + + + + + L E L Sbjct: 966 PGI-EPDKLERIFDPFYSTKSNGLGMGLSICRAIIKAHGGHLWAESELGRGATFHFTL 1022 >gi|253575465|ref|ZP_04852802.1| sporulation kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845112|gb|EES73123.1| sporulation kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 66/211 (31%), Gaps = 8/211 (3%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 LS + + + + I H++ +P+ A+ L+LL + + + Sbjct: 18 TLSRLASIGQIAAGIAHEVRNPLTAVKGFLQLLQREVSHSYLDFACSELEQAISTLQDLL 77 Query: 68 RLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKIDLSRERAKILL 120 +++ +++ L + + +D I + + + + K Sbjct: 78 QVSKPDLEDESCIAINLCSELESLLYLFQDQIYRVQIAKKFRNSDEIIYGKRNQLKKAFF 137 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL A ++P G +TI + + G EK + + + Sbjct: 138 NLLKNAFEAIPNEGTITIEHYRVGDIIYVIISDTGVGV-PKEKLQLLGTPFFTTKDEGTG 196 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V +++ + + + + Sbjct: 197 MGLTQVYSTIYQHGGTIDVKSREGIGTTFTI 227 >gi|218260509|ref|ZP_03475779.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii DSM 18315] gi|218224494|gb|EEC97144.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii DSM 18315] Length = 519 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + L + + + H+I +P+ AI LL ++ + E + +I ++ Sbjct: 289 LQYEVKKADEANRLKSAFLANMSHEIRTPLNAIIGFSNLLVEANDPEEKKEFVHIITSNN 348 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104 + + + D + D+ Q ++ V++ + Sbjct: 349 ELLLQLINDIIDMAKIESGTLDFTYSDTDINQLMEDLCQQMKMKNTRPDSVKIEFVQRQS 408 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 S +I++N A +G + + + F ++ G +K Sbjct: 409 ECIINTDSNRIMQIMINFMTNAMKFTEQGSITFGYKKS-EKDIYFFVRDTGIGI-PSDKK 466 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI D V + + ++ + + + L Sbjct: 467 EQIFDRFVKLNTFAQGTGLGLPICAMIVDKFGGTIGVDSQQGEGATFWFRLP 518 >gi|52079997|ref|YP_078788.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52785372|ref|YP_091201.1| KinA [Bacillus licheniformis ATCC 14580] gi|319646226|ref|ZP_08000456.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52003208|gb|AAU23150.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52347874|gb|AAU40508.1| KinA [Bacillus licheniformis ATCC 14580] gi|317391976|gb|EFV72773.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 603 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 13/226 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57 + + S L L + I H+I +P+ AI L+L+ E + S Sbjct: 379 KQTEELMVRSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEENEHYFNIIFSELS 438 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKI 109 +I + + LA ++ + L + + + + + Sbjct: 439 RIELILSELLMLAKPQQNALKEKLDLIRLIREVTALLETQANLNGILINTILTDDKIYIK 498 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL A S+P GG V ++V+++ + + ++ G +I + Sbjct: 499 GDQNQLKQVFINLIKNAVESMPNGGTVHLTVRETDDSVVVEVEDEGEGI-PEHVLKRIGE 557 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + + + L K Sbjct: 558 PFLTTKEKGTGLGLMVTFNIIENHNGTIEVDSKAEKGTTFKILFPK 603 >gi|46199441|ref|YP_005108.1| two-component system histidine kinase [Thermus thermophilus HB27] gi|46197067|gb|AAS81481.1| two-component system histidine kinase [Thermus thermophilus HB27] Length = 468 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 56/207 (27%), Gaps = 17/207 (8%) Query: 23 CHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLK---------FMRLAFG 72 H++ +PI AI + LL + + + + + A K Sbjct: 255 SHELRTPITAILGHVGYLLRRTPLTEAQRESLEVVKREAERMGKLVSDLLDLSQSGTWRI 314 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 V L L ++ + V+ + +++ NL A + R Sbjct: 315 RPVPVRVLDLLEEVREEFAKSFDGAILVEAPEDLYVLGDPDRLHQVMANLVSNALKAGAR 374 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SHDIQFYYVI 187 + ++ + ++ +G P F + + + + V Sbjct: 375 HVWLRAFDL--GDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVK 432 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E S L Sbjct: 433 AILEAHGGEVWVESQVGKGTAFSFSLP 459 >gi|150017892|ref|YP_001310146.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904357|gb|ABR35190.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 463 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SMSAIIR 63 L L + H++ +P+ + + +E L + E +LI Sbjct: 239 EQEKLRQRLTKDVSHELRTPLSTLQSHMEALIDGIWEPTPERLISCHEEILRLKRLVGDL 298 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERAK 117 K + + +G+ + I + + + ++ Sbjct: 299 EKLAQYESENLVLNKTEFNIGEAVKNIVLNFEKEFLNKGVSLIFHEKDIVGYLDKDKISQ 358 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174 +++NL A +GGKV +++ + N S+K G + F + + Sbjct: 359 VVVNLISNALKYTQKGGKVDVNISEDNNYIEISVKDTGIGISQDDLPYVFERFYRADESR 418 Query: 175 T--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + I + K Sbjct: 419 NKLTGGAGIGLTISKSIVEAHGGNITVDSIIGKGTNFVVKVPK 461 >gi|119716163|ref|YP_923128.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119536824|gb|ABL81441.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 423 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 58/218 (26%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLEL-LDEVGIED---EVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +P+ +I + + L+ ++ + + + ++ + + Sbjct: 198 FVALVSHELRTPLTSIVGYVAVALERDDLDPVLRTQLDAVDRNGKRLERLVQDLLDEVQH 257 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VSWTGEKIDLSRERAKILLNL 122 +G L VI R+Q V + A+++ NL Sbjct: 258 SGRPLPLREQDTDLAVIVRECVAGARLQAARGGVRLDADVPDSIAFTGDPERLAQVVDNL 317 Query: 123 FMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 A GG + S++ G E+ I Sbjct: 318 VSNAIKYTEPGGSARVQAIVVADGSVRISVQDTGIGIDPAERARLFSRFFRGAEASRRAI 377 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + +L Sbjct: 378 QGIGLGLSITKSIVESHGGRIEVDSEPGRGSEFRVVLP 415 >gi|262384808|ref|ZP_06077940.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262293524|gb|EEY81460.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 494 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 15/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + L + + + H+I +P+ AI +LL +++ + + LI++++ Sbjct: 257 LIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDLELRQNYISLIKMNN 316 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGE 107 + + + V + DI I+ + + Sbjct: 317 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMQDIYNSIQLRKPEGVEITLDACSDII 376 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166 +I +NL A +G + F + G E Sbjct: 377 FNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEAEGKMVKFYVSDTGCGIPKDELDNI 436 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + + L Sbjct: 437 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 485 >gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41] gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41] Length = 561 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 59/238 (24%), Gaps = 29/238 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54 M + L + + + H++ +PI + E L + + + Sbjct: 327 MTEQHRL----EKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKIIY 382 Query: 55 LSSMSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S + S I + E + + + Sbjct: 383 DESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHVHLLFDSE 442 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L NL A G VT+ V+ S++ G+ Sbjct: 443 FNDDAMINIDEDRIEQVLTNLVDNALRHTDEGS-VTVKVEKEPTFAKISVQDTGHGIPQD 501 Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + + ++ + + + L Sbjct: 502 DLPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 559 >gi|118587243|ref|ZP_01544671.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163] gi|118432385|gb|EAV39123.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163] Length = 630 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 61/228 (26%), Gaps = 30/228 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++++ +E L E + + + + + L+ Sbjct: 392 FVSNVSHELRTPLTSVNSYIETLQEGALTQRKIAREFLGVAHDETQRMIHMINDLLELSR 451 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------------- 114 G + + I + + D + Sbjct: 452 MDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDS 511 Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N+ A P GG + I + ++ + I S+K +G + Sbjct: 512 DKFMQVVDNVINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYR 571 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E + L K Sbjct: 572 VDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 619 >gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 499 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 23/222 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + + H++ +P+ +I +LL E + R + +I ++ Sbjct: 250 SEFIATVSHELKTPLNSIIGFSDLLLEDSSGKLSERQARYINNISISGKHLLQFIDDILD 309 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------------------KIDLSRERAK 117 G +E +F + K ++ + + Sbjct: 310 LSKIEAGKTFLEPENFEFTKIFKDIEKVFRPRVSGKKLSLNFEVDSGIKSFYADKMMFKQ 369 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NV 172 IL NL A P G +T+S N +K G + + Sbjct: 370 ILYNLISNAVKFTPEEGSITVSAAKIGNMVRICVKDTGIGISREDMDSFFQPFKQPDSFF 429 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + E + L Sbjct: 430 KRRYERTGLGLFLVKRFVEMHGGNIQAESVPGEGSSFIIELP 471 >gi|255325894|ref|ZP_05366986.1| two-component system sensor kinase TcsS1 [Corynebacterium tuberculostearicum SK141] gi|255297106|gb|EET76431.1| two-component system sensor kinase TcsS1 [Corynebacterium tuberculostearicum SK141] Length = 503 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSS 57 + +++ + + H++ +P+ ++ EL +D + ++ S Sbjct: 265 LQRSVVRAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATKDVDLVFSKIDDESK 324 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113 +++ + L +D + A S Sbjct: 325 RMSLLVEDLLALTRAEGTRLDLHPVDLLELALSVGSSARAAFPGREIKVANDAKSIPVVN 384 Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++LLNL VT+ ++ N+ + + +G + F + Sbjct: 385 GDASRLHQVLLNLVTNGIRHGGEDAAVTLRLRREANDVLVDVSDDGKGMSQEDAAHIFER 444 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ + + + L Sbjct: 445 FYRADTSRTRDTGGSGLGLAIVHSLVEQHDGSISVDSELGRGTTFTVRLP 494 >gi|212639859|ref|YP_002316379.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561339|gb|ACJ34394.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 423 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56 + ++ L M++V+ L + I H+I +P+ + ++L+ I E + Sbjct: 197 LIRSKAIKLEKMEVVSQLAASISHEIRNPLTVVKGFMQLMKAKDISAETKEQYMNIALEE 256 Query: 57 -SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKID 110 + + +I ++ A + +++ ++E+VI+ V Sbjct: 257 LNRACMIIDDYLTFAKPFPEKMETFHVERELEKVIDMLRPFANMYGVQIVATLMPATMEG 316 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LN+ + GGKV + + ++ G E+ + + Sbjct: 317 NAQYFRQCFLNIIKNGIEATTNGGKVYVDAYADEKTVTIVVRDEGEGM-TKEQLARFGEP 375 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA---LLEK 215 + + I + + ++ LLEK Sbjct: 376 YFSTKEKGTGLGAMVSIRIIETMNGTWRIQSEKGRGTTMTVSFMLLEK 423 >gi|209523203|ref|ZP_03271759.1| histidine kinase [Arthrospira maxima CS-328] gi|209496354|gb|EDZ96653.1| histidine kinase [Arthrospira maxima CS-328] Length = 258 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 59/230 (25%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLS 56 N S+ +L S + HD+ P+ ++ +LL + V +I S Sbjct: 28 NQQLLRSNQELE-QFASVVSHDLQQPLTSLKAFAQLLQIECHDELREKPREYVNHIINAS 86 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEKID 110 + + T S + + + + + + +Q + Sbjct: 87 IRMQTMIQDLLIYCGCDTHSPNLELIDCNQLLAQILIDLRLEIDKNNATIQYDNFPKIKA 146 Query: 111 LSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQ 166 ++ NL A + IS Q++ IF NG E + Sbjct: 147 NHIHLTEVFQNLISNAIKYRSDDLAPSINISCQETDTNWIFCCADNGIGIESKDFENIFK 206 Query: 167 IVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I I + ++ E K Sbjct: 207 IFTRLHTFKKYPGTGIGLSICKKIIESYGGKIWLESNPGVGTQFYFTFPK 256 >gi|198277470|ref|ZP_03210001.1| hypothetical protein BACPLE_03692 [Bacteroides plebeius DSM 17135] gi|198269968|gb|EDY94238.1| hypothetical protein BACPLE_03692 [Bacteroides plebeius DSM 17135] Length = 1340 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 58/215 (26%), Gaps = 21/215 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 I H+ +P+ I + LE L + I + ++++ + + + + + G Sbjct: 818 NISHEFRTPLTLILSQLETLLQTDYLSTAIHNRILRIYKNAWNMRKLISELLDFQKQEEG 877 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------IDLSRERAKILLNLFM 124 + + ++ + + E + K+ NL + Sbjct: 878 GLKLKVEEHNMVSFVHQIYTSFHEIASQKEIEYHFQASTENLPVWFDELQMHKVFSNLLL 937 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-----IDSH 179 A P G + I + + + I ++ G + + Sbjct: 938 NAFKYTPTHGCINIEIYSNNKDAIITVSDTGIGISEKDIQKIFNQFYQVESQPNSLTPGT 997 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ + L Sbjct: 998 GIGLSIAKNIVELHHGNIIVHSTLQKGTRFTVSLP 1032 >gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 918 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L+NL A G + ++S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] Length = 683 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 74/234 (31%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL+ ++ + + + + Sbjct: 293 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRGIEAIERSA 350 Query: 62 I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++ +G V + + + + + +A K + + + Sbjct: 351 RTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERARETIEPMARQKNITIDTEFLPVP 410 Query: 111 LSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + + ++ NL A P GG + +SV S + +++ G P Sbjct: 411 MLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPSPEGVVATVRDTGIGIEPAFLPHI 470 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + L + R+ D ++ L Sbjct: 471 FDRFQQADLSNTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGTTMAVSLP 524 >gi|126649869|ref|ZP_01722105.1| two-component sensor histidine kinase [Bacillus sp. B14905] gi|126593588|gb|EAZ87533.1| two-component sensor histidine kinase [Bacillus sp. B14905] Length = 485 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 66/216 (30%), Gaps = 12/216 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR 63 ++++V + + I H+I +P+ ++ +LL ++ M L + Sbjct: 249 QALNVVGQMAASIAHEIRNPLTSLKGFTDLLKINADDESRMYLSVIDSELQRMEQILSEL 308 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDLSRERAKIL 119 L + + ++ + + + + + + + + ++L Sbjct: 309 LVLSKPSTMKVELLELDHIVKQVIEFMLPDALMKNIMIQYISIPNQVYIGGSENRLKQVL 368 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +NL A S+ GG +T+ + + ++K G + + Sbjct: 369 MNLIKNAMESMNNGGTITVEMTTNDCAIVELTIKDEGVGMDSTTL-QNLFQPFYTTKSTG 427 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +V + E+ + Sbjct: 428 TGLGLAFVKKVIEEHDGVIGVNSELQKGTCFHLQFP 463 >gi|148654377|ref|YP_001274582.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566487|gb|ABQ88632.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 556 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 64/235 (27%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSM 58 + I + + S I H++ +P+ I E L + + + + Sbjct: 283 EQKIEAEMQNT-----FISVISHELRTPVSIIKGYAETLARQDAAWDAATLREGLMVIIE 337 Query: 59 SAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 A + + + + + + ++ + Sbjct: 338 EADRLAQQINTLLEASRLQTDGMRLELSDWPVRPLVERVVERFMPQAGERFTFEIDIPDD 397 Query: 108 KIDLSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + + +L NL A P GG V I+ + S + I S+ G F E Sbjct: 398 LPPVHADYERTRTVLENLVSNAIKYSPNGGLVRIAARVSGDYAIISVSDQGIGIPFEEQK 457 Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + ++ R+ + S + Sbjct: 458 KLFRRFYRVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRFSFTVP 512 >gi|315187284|gb|EFU21040.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta thermophila DSM 6578] Length = 584 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 18/237 (7%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 + +N L + + + ++ H+I +P+ I + E + ++ ++ + Q Sbjct: 347 LERNREKLLQAEKIATWQDIAQQLAHEIKNPLTPIRLAAERIRRKAEGVEDEALQRVLDQ 406 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVS 103 ++ + + ++ + + ++ ++ + Sbjct: 407 STQIILHEVNRLTRLLEEFRDFSRLREPTLTPCNLRSLLSHILSSYDAPETPYRFHLDTP 466 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158 + L NL A + + +D ++ ++ G+ Sbjct: 467 EDIVIQADEEHLKQALGNLIQNAIDAGAGKEQTITVRLLRTSRDGRSYATIEIRDEGHGI 526 Query: 159 RFPEKFTQI-VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + V + ++ ++ L Sbjct: 527 --PEDQQRLVFLPYYTTKRQGTGLGLAIVQRIVLDHNGKIWFTSEVGKGSTFYIELP 581 >gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 419 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 63/229 (27%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60 +S+ L + + + H++ +P+ AI L+ + +I ++ Sbjct: 180 ERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMATATSEEEKKMYTDIISENNERL 239 Query: 61 IIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107 + + + D+ L ++E + + + V + Sbjct: 240 LRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLNENPLVALVCEAHLEPIM 299 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L NL A G + +E F + G E+ +I Sbjct: 300 MHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGI-PKEEQEKI 358 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + H R E +L Sbjct: 359 FSRFTKLDREMQGTGLGLTLSQTIVHNFGGRFGVESEVGKGSTFWFILP 407 >gi|291619340|ref|YP_003522082.1| KdpD [Pantoea ananatis LMG 20103] gi|291154370|gb|ADD78954.1| KdpD [Pantoea ananatis LMG 20103] Length = 891 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 58/227 (25%), Gaps = 18/227 (7%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56 + L L S + HD+ +P+ + E+L ++ + + Sbjct: 652 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 711 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 L R+ G + + + V++ + + + Sbjct: 712 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGREVELDLPEDIVLIKG 771 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + ++ NL + I ++ G + F + Sbjct: 772 DSTLLERVFTNLIENSLKYAGNCAPRGIRAWCENTRLEIAIWDGGPGIAQNDLTRIFDKF 831 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ ES + + + + ++ E + L Sbjct: 832 SRGDKESAVPGVGLGLAICKTIIESHGGQIWAENRAEGGACFRLSLP 878 >gi|229191724|ref|ZP_04318702.1| hypothetical protein bcere0002_33840 [Bacillus cereus ATCC 10876] gi|228591770|gb|EEK49611.1| hypothetical protein bcere0002_33840 [Bacillus cereus ATCC 10876] Length = 510 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500 >gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] Length = 529 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFN--LSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSM 58 KNI S L ++ + + H+I +P+ AI +L + + + Sbjct: 289 QKNIELAKAQESNKLKSMFLANMSHEIRTPLNAIVGFSSILADMQEEDMDERHFYVDIIN 348 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------ 112 L + +++ +++ I + + Sbjct: 349 KNSDLLLQLINDILDFSKIEAGTFDIHLKKFDFKEICEEIYAVHALKIPDHVCFSFNRDL 408 Query: 113 ---------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +++ N A G + + S+ G E Sbjct: 409 PSVELNSDPKRLTQVISNFLTNAIKFTSDGEIKLDYLLEKDK-IYVSVTDTGIGI-SEEA 466 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D V + + + + ++ L Sbjct: 467 CNNIFDRFVKLNTHKQGTGLGLSISKSIIEKLGGKIGVYSTLGKGSTFWFTLP 519 >gi|153005861|ref|YP_001380186.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029434|gb|ABS27202.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 549 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 53/219 (24%), Gaps = 22/219 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRL- 69 L + + HD+ +P+ AI L + +I+ S+ + + Sbjct: 330 QLLAVVSHDLRTPLSAIRMGAHRLRASAASAVPEALGAIADVIQRSAGRMERLIGDLLDV 389 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-----DLSRERAKI 118 S L + V++ ++ Sbjct: 390 AAVQAGRLTVDPSPRRPGELVREAVESMQSLVRGHGVELDVDAAPDLPLVLADHDRILQV 449 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--- 175 L NL A GG++ + + F++ G E +I + Sbjct: 450 LGNLVSNAVKVTEAGGRIGVRAEPRAAAVRFAVSDTGPGIAPDEL-ERIFEPYRRGAGAT 508 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E L Sbjct: 509 YSGTGLGLAIARGIVEAHGGRIGVESAVGAGSTFWFTLP 547 >gi|319651215|ref|ZP_08005345.1| hypothetical protein HMPREF1013_01957 [Bacillus sp. 2_A_57_CT2] gi|317396995|gb|EFV77703.1| hypothetical protein HMPREF1013_01957 [Bacillus sp. 2_A_57_CT2] Length = 538 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICF----NLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL 55 M + M+ + L + + H+I +P+ + L++ L + + +E I+L Sbjct: 306 MERTKILKELQRAEKMNAIGQLAASVAHEIRNPMTVVKGFLQIFLAKEEMTEEEKMYIKL 365 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW 104 + + + + + ++S Sbjct: 366 MIDEMDRAETIINDYLSLAKPDIEQVEAINAGELAAGVIDLMNSYAMMSKNISVASEISE 425 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + E ++L+N++ ++ GG +++SV +F + G E+ Sbjct: 426 GIWIQGNASELKQVLINIYKNGIEAMKNGGCLSLSVSTEGIYGVFEISDTGIGM-TREEM 484 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + K R+ V + Sbjct: 485 DRLGTAFYSLKEKGTGMGLLVCYQIVDRMKGRIEVNSEKGKGTVFRIFIP 534 >gi|290889604|ref|ZP_06552694.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429] gi|290480802|gb|EFD89436.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429] Length = 619 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 30/228 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++++ +E L E + + + + + + L+ Sbjct: 381 FVSNVSHELRTPLTSVNSYIETLQEGALTQKKIAREFLGVAHDETQRMIHMINDLLELSR 440 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------------- 114 G + + I + + D + Sbjct: 441 MDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDS 500 Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N+ A P GG + I + ++ + I S+K +G + Sbjct: 501 DKFMQVVDNVINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYR 560 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E + L K Sbjct: 561 VDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 608 >gi|257094403|ref|YP_003168044.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046927|gb|ACV36115.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 884 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 29/227 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + S + H+I +P+ I E+L+ + +E + +R S + + Sbjct: 364 SQFLSNMSHEIRTPLNGILGMAEVLERTPLNNEQARYLRAISSAGQALHGLLGDILDLAK 423 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRERAKIL 119 I L DI+ +E + ++L Sbjct: 424 IEAGKIVLEDIDFDLESLLVQLAETFRELASASGKSLTADFVGVARLCLRGDPTRLRQLL 483 Query: 120 LNLFMVAHASLPRGGKVTI------SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-- 171 NL A RGG +D++ FS++ G PE ++ Sbjct: 484 SNLLTNAVKFTERGGITLNVVRLASRPEDARVWLRFSVRDTGIGI-APEAAARLFQPFVQ 542 Query: 172 ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + +A L Sbjct: 543 ADQSTTRRFGGSGLGLVICKQLVELMGGSISVDSTVNQGSTFTAELP 589 >gi|225017491|ref|ZP_03706683.1| hypothetical protein CLOSTMETH_01418 [Clostridium methylpentosum DSM 5476] gi|224949730|gb|EEG30939.1| hypothetical protein CLOSTMETH_01418 [Clostridium methylpentosum DSM 5476] Length = 500 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 56/220 (25%), Gaps = 18/220 (8%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 +L L + I HD+ +P+ I E++ + E +Q+I + + + Sbjct: 278 ELRRELIANISHDLRTPLTMITAYSEVMRDLPGENTPENVQVIIDEARRLTTLVNDLLDI 337 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------KIL 119 L + V G I ++ +++ Sbjct: 338 SKIQSGAQELCLTEYNLTESIHTTLLRYSKLVENDGYHIRFVSDQEVFVQADESKLSQVI 397 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176 NL A + VTI N + G+ E + + + Sbjct: 398 YNLINNAVTYTGKDKAVTIRQIVLGNAVRIEVADTGDGIPADELPYIWDRYYKVDKTHKR 457 Query: 177 D--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R I L Sbjct: 458 ARVGTGLGLSIVKAVLEMHGARYGVSSIPGQGSTFWFELP 497 >gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1218 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 24/233 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53 +A+ N +L + S H+ +P+ I +S ELL E + ++ Sbjct: 988 LAREQELN----ELKSRFISMTSHEFRTPLTTILSSTELLKYYSSKFTEEKKQIHFERIQ 1043 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + L G +D D+ Q + + ++ Sbjct: 1044 SNVHHITQMLNDILLLGKAEAGKLDFNPAQMDVRQFCQQLVEEFQQGIGHRHSLCFTHQG 1103 Query: 114 ER----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + IL NL A P V + + NE IF +K G + Sbjct: 1104 QLTPVSLDEKLLRHILGNLLSNALKYSPIDRPVCLELTCRHNELIFRIKDQGIGISETDQ 1163 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F G I + V + + E + ++ Sbjct: 1164 QRLFESFHRGTNVGNISGTGLGLSIVKKAVDRHGGTINLESKLGVGTTFTVVI 1216 >gi|188587492|ref|YP_001919037.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352179|gb|ACB86449.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 612 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 75/245 (30%), Gaps = 40/245 (16%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 L+ + + + H++ +P+ ++ + +E L + I +++++ + + Sbjct: 358 EQEKLIQMRQEFVANVSHELRTPLTSVKSYVETLLDGAHKDDEIAPRFLKVVQQETDRMV 417 Query: 62 IRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 +K + + + + D + + D+++++ + ++ Sbjct: 418 TMVKDLLVLSQLDRKEPIIECRDINFMDVLDRSISAIESLTKDQKIELHLDYKSLEGEYI 477 Query: 114 -----------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + ++ N+ A P G + I+V+D S+K NG Sbjct: 478 DVFNEKPEFIRISGDSDKLTQVFTNILENAIKYSPSGEWIQITVEDYYENIKISVKDNGM 537 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + +I + + + + + + + Sbjct: 538 GIPAEDLP-RIFERFYRVEKARSRARGGSGLGLAISREIIRNHGGDINVSSQEGRGTEVI 596 Query: 211 ALLEK 215 L K Sbjct: 597 VYLPK 601 >gi|218898733|ref|YP_002447144.1| sporulation kinase A [Bacillus cereus G9842] gi|228959824|ref|ZP_04121499.1| hypothetical protein bthur0005_32990 [Bacillus thuringiensis serovar pakistani str. T13001] gi|218544091|gb|ACK96485.1| sporulation kinase A [Bacillus cereus G9842] gi|228799954|gb|EEM46896.1| hypothetical protein bthur0005_32990 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 510 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500 >gi|156741161|ref|YP_001431290.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232489|gb|ABU57272.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 359 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+ + L + H++ +P+ + LE L + + E + ++ Sbjct: 117 MAEALA---QVEQQRVTLIGNVAHELRTPLAGLEGYLEGLLDGVLPGDPETISAMQHEVR 173 Query: 59 SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106 + ++ + D + + I + + Sbjct: 174 RLRRLVDDLQHLSRVEAGQMPLQSQVFDLVALVQRIVAQLRPQLIEQCLEIAVEAPDRAV 233 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 A++L+NL A P G +T+ V+ +++ G P Sbjct: 234 LAYADPDRTAQVLVNLVGNAIRYTPEDGCITLRVRSEVEHVQVAVEDTGIGIPAEALPYL 293 Query: 164 FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215 F + + I LA + V + L + Sbjct: 294 FERFYRVDPSRSRASGGSGIGLTIARHLARAMGGEITATSPGIGQGSVFTLTLPR 348 >gi|156743358|ref|YP_001433487.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234686|gb|ABU59469.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 899 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 21/218 (9%), Positives = 63/218 (28%), Gaps = 24/218 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF------- 66 + + H++ SP+ I+ ++LL G + ++++ +R +K Sbjct: 664 ATVSHELRSPLTVIYGYVDLLLRGLVGELSGDQYDLLEAVRNRVELMNNIVKNVILVASI 723 Query: 67 -MRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL---N 121 D + + + + F + V+ + + +R ++++ Sbjct: 724 EANTLQTDLAPQDVRRLIDETIAPMRKAFERKGLTLTVNTPDDLPPVRADREQLMIILGQ 783 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A P+G + + + G ++ ++ S Sbjct: 784 VIDNARRYTPQGEVAITAHRRDDGMVQIDVADTGPGI-PADQMPRLFTRFFRVEGNNSPE 842 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + ++ + S L Sbjct: 843 RGSGLGLVITRQLVERHGGKVWAQSEVGRGSTFSIALP 880 >gi|116490222|ref|YP_809766.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus oeni PSU-1] gi|116090947|gb|ABJ56101.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus oeni PSU-1] Length = 633 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 30/228 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ ++++ +E L E + + + + + + L+ Sbjct: 395 FVSNVSHELRTPLTSVNSYIETLQEGALTQKKIAREFLGVAHDETQRMIHMINDLLELSR 454 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------------- 114 G + + I + + D + Sbjct: 455 MDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDS 514 Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N+ A P GG + I + ++ + I S+K +G + Sbjct: 515 DKFMQVVDNVINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYR 574 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E + L K Sbjct: 575 VDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 622 >gi|148657916|ref|YP_001278121.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148570026|gb|ABQ92171.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 392 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 53/235 (22%), Gaps = 38/235 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-- 75 L + + H++ +P+ ++ +E L +++ + + + Sbjct: 156 LVANVSHELRTPLASMKLLVETLQSDPPPPVAKRMLDQIAQEVDAITQLVEELHELAQIE 215 Query: 76 ---------SVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNL 122 + + I + + + ++LLNL Sbjct: 216 SGRVALQLVPAPLAPLVARTIERIRPQMDRKHLQMTTDVPDDLPQALIDCNRVGQVLLNL 275 Query: 123 FMVAHASLPRGGK------------------VTISVQDSKNENIFSLKINGNLARFPE-- 162 A P GG + S+ NG + Sbjct: 276 LHNASKFTPEGGCVSIAARVITVGDGSPPPPGLPPSHAPGQWLLLSVTDNGIGIPATDLS 335 Query: 163 -KFTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + D + L + R+ I+ L Sbjct: 336 RIFERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSIEGEGSTFYLTLP 390 >gi|55981472|ref|YP_144769.1| sensor histidine kinase [Thermus thermophilus HB8] gi|55772885|dbj|BAD71326.1| sensor histidine kinase [Thermus thermophilus HB8] Length = 468 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 57/207 (27%), Gaps = 17/207 (8%) Query: 23 CHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLK---------FMRLAFG 72 H++ +PI AI + LL + + + + + A K Sbjct: 255 SHELRTPITAILGHVGYLLRRTPLTEAQRESLEVVKREAERMGKLVSDLLDLSQSGAWRI 314 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 V L L ++ + + V+ + +++ NL A + R Sbjct: 315 RPVPVRVLDLLEEVREEFAKSFDGEILVEAPEDLYVLGDPDRLHQVMANLVSNALKAGAR 374 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SHDIQFYYVI 187 + ++ + ++ +G P F + + + + V Sbjct: 375 HVWLRAFDL--GDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVK 432 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E S L Sbjct: 433 AILEAHGGEVWVESQVGKGTAFSFSLP 459 >gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 558 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 59/254 (23%), Gaps = 41/254 (16%) Query: 2 AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L A SR I H+I +P+ I +EL + + + + Sbjct: 155 RKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVELALLTASDVQTREYL 214 Query: 54 RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 S + + L + E + + Sbjct: 215 GFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMAKEKDLPLR 274 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIF 149 + ++L N+ A RG V + + +F Sbjct: 275 WSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRVDRTEPEGLAGGESVQLLF 334 Query: 150 SLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 S++ G +K +I + + L R+ E Sbjct: 335 SVRDTGIGI-PADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRIWVESDP 393 Query: 204 DHNVV--LSALLEK 215 + L + Sbjct: 394 GKGSTFHFTVRLSR 407 >gi|328953464|ref|YP_004370798.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453788|gb|AEB09617.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 740 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 76/240 (31%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLI 53 MA+ + L + L +L L + + H+I +P+ I ++L E + +++Q I Sbjct: 491 MARKMEEQLYFTEKLASLGQLAAGVAHEINNPLAIILGYTDMLLEKTEADSKQYKILQTI 550 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEK 108 + ++ + V + ++ Q+ Sbjct: 551 ERQGNNCKRIVENLMTFARAPEEVQHDTDVNRNIEMVLEVVRNTLFTRKIEYQLELEERL 610 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEK 163 ++ + ++ LNL A ++P GG++TI+ + + E G E Sbjct: 611 PRVNGDAAQLQQVFLNLITNAVKAMPEGGRLTIATRSLKNGAEVQILFIDTGVGI-KKEH 669 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI-------IDDHNVVLSALLE 214 +I D + + + + + + ++ + L Sbjct: 670 LPKIYDPFFTTRKVGEGTGLGLSVSYGIITKFGGSINCVSKAQEEVGKEESGSTFTITLP 729 >gi|323494554|ref|ZP_08099658.1| nitrogen regulation protein NR(II) [Vibrio brasiliensis LMG 20546] gi|323311157|gb|EGA64317.1| nitrogen regulation protein NR(II) [Vibrio brasiliensis LMG 20546] Length = 348 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 68/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+ + + + ++ A Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERTLPDPSLAEYTQIIIEQA 175 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + + L + Q+++ ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGKKQPENLHLILEKVRQLVDLEANQSVSIERDYDPSLPEILMDS 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I L + + + I Q K + NG Sbjct: 236 DQIEQALLNIVSNAGQILKGQQNGEIVIRTRTVHQANIHGQRCKLAARIEITDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + L +++ ++ E + L Sbjct: 295 ADLQDTLFYPMVSGREGGTGLGLSIAQNLIDQHQGKIDVESWPGR-TTFTIYLP 347 >gi|298387105|ref|ZP_06996659.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298260255|gb|EFI03125.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1354 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I +++ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYHKILGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + S E Sbjct: 875 ITELLDFRKQEQGHMKIKVSRHNLVNFLYENYLLFLEYASSKQINFKFNKQSDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V I +K G E Sbjct: 935 QKQMQKVVNNLLSNALKHTKAEDTISINVSQEDKYVIIEIKDTGTGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D I + + + E L+ Sbjct: 995 QTERLDSLNTGAGTGIGLALTKGIIELHHGTIRVESEPGKGSRFIITLK 1043 >gi|298249702|ref|ZP_06973506.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547706|gb|EFH81573.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 520 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 24/232 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + L + S + H++ +P+ +I +LL + + Q + + Sbjct: 276 SERKRLEQLK--DNFISMVSHELKTPVTSIKGYTQLLQKHFQRSDEKQSLYFLAKMNYQL 333 Query: 64 LK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK 108 K + + D + + + + + A K +++ Sbjct: 334 DKLTDLINEILSISQLDLGMLNLRPKVFDLVEVVREELESQQATTATHKLQLKGVEKLTI 393 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++ +L A P +V I + S + ++ G E F+++ Sbjct: 394 TGDCERIGQVIHHLVSNAIKYSPGRKQVCIEICHSDQAALIHIQDYGIGI-DSEHFSRLF 452 Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T I Y + ++ + E S L Sbjct: 453 ERFYRVDEPLEQTFPGLGIGLYLAHEIIQRHQGHIWVESQKGQGSTFSFSLP 504 >gi|296449313|ref|ZP_06891096.1| sensor histidine kinase KdpD [Clostridium difficile NAP08] gi|296880755|ref|ZP_06904705.1| sensor histidine kinase [Clostridium difficile NAP07] gi|296261840|gb|EFH08652.1| sensor histidine kinase KdpD [Clostridium difficile NAP08] gi|296428250|gb|EFH14147.1| sensor histidine kinase [Clostridium difficile NAP07] Length = 535 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGIE 46 K L L I HD+ +P+ +I S +ELL + + Sbjct: 292 KKANLEAERERLRGNLLRSISHDLRTPLTSILGSSSTILENDDVIDKETRVELLKNIYED 351 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + +S + VD +I + K Sbjct: 352 TSWLTHSVENILSMTRIDEGKLDIEKRPEVVDEIIAESILRVKKFANSRDIKTNIPDEII 411 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++L+NL A P+ K+ ++V+ ++ +F + NG + Sbjct: 412 IVHVDVLLIEQVLVNLIDNAIRHTPKNSKIELTVKKESSQVLFEVADNGKGIPNEDIGNI 471 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + N ++ + + + ++ + Sbjct: 472 FNRFYTKNKSRNLERRGIGLGLEICKSIVEAHGGEIVAFNNPSGGATFRFSIP 524 >gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 963 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------------- 47 + + L + + + + + H++ +P+ AI ++LD ++ Sbjct: 579 LEEARNAALQASEAKSRFLAHMSHELRTPLNAIIGFSQMLDMGALDPLTAQQQTAVSHIR 638 Query: 48 ----EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 +++LI A I L + + + + D + Sbjct: 639 DSGRHLLELINDILDLARIESGQSELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGE 698 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++LLNL A GG+VTI V+ + + G Sbjct: 699 AGLHVYADRTRLRQVLLNLTSNAIKYNRLGGRVTIDVEPAGEWVRIRVSDTGAGIDES-L 757 Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + I+ I L + + + L Sbjct: 758 REEIFQPFQRLGAEKTAIEGTGIGLIICKHLIEVMGGSIDFDSVPGQGSRFWFEL 812 >gi|254436808|ref|ZP_05050302.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198252254|gb|EDY76568.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 716 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 32/243 (13%) Query: 3 KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 KN+ + S + A+ L + HD + + AI +LL D+ + + IR Sbjct: 332 KNLEMQFVQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDGDYADLVQIRQ 391 Query: 56 SSMSAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +S A + + D L D ++ + + + + Sbjct: 392 NSNRAAALVGQLLAYSRKQNLQPEVLDLRNTLSDSTHLLNRLVGERVTLTLDHNPRLSQI 451 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD---------------SKNENIFSLKI 153 ++ ++ L A ++ GG + I ++ + Sbjct: 452 RADKRQLEQVLMNLVVNARDAMTDGGNIRIETENTVLGEGLSRDRVTVPPGRYVELRVHD 511 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G +K +I + + + + + + + + S Sbjct: 512 TGTGI-PEDKREKIFEPFWTTKKTGEGTGLGLSTAYGIIKQTGGYIFVDSTIGVGTTFSI 570 Query: 212 LLE 214 L+ Sbjct: 571 LIP 573 >gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM 17393] gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM 17393] Length = 381 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 A+ N L + + H+I +P+ AI ELL + + ++++ ++ Sbjct: 135 AREKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLASASTEEEKTQFLEIVHSNNE 192 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------W 104 + VD + DIEQ+ + V Sbjct: 193 LLQQLIADILDLSKIEAGTLEFTFSEVDVKQLMLDIEQLFRMRLEDKAAVIQIIRETPAD 252 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++ N A G + ++ F +K G+ + Sbjct: 253 ECIMYTDRNRLQQVVSNFMTNAVKFTDEGSITFGYNRCAEG-LYFYVKDTGSGIPEDKVN 311 Query: 165 TQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 VE + ++ + ++ E +L Sbjct: 312 HIFERFVRVEQNKKGTGLGLAICEMIIRKLGGKIGVESEYGKGSTFWFILP 362 >gi|220919452|ref|YP_002494756.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957306|gb|ACL67690.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 687 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 68/249 (27%), Gaps = 37/249 (14%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43 K + L+ + +V++ L + + H++ +P+ + +L LDE Sbjct: 292 RKQLHARLALADRMVSVGTLAAGVAHELNNPLAYVIANLSYLDEQLTVLAPRVAAAGSSR 351 Query: 44 ---------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 + + F R + G V L V + I Sbjct: 352 EPDLASALLDAVHDARDGAERMRIIVRDLKTFSRPDEEHAGPVSLGPLLDSCVSVAWNEI 411 Query: 95 AVDKRV--QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNEN 147 R+ + ++ LNL + A ++P G +Q + Sbjct: 412 RHRARLLRAPTDVPPIQGCQARLGQVFLNLLVNAAQAIPEGHVDEHQIQVSARALPGGQV 471 Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH 205 + G+ PE +I D + + + + E + Sbjct: 472 AVEVSDTGSGI-APEHLPRIFDPFFTTKPPGVGTGLGLSICQSIVSAMGGEIQVETMLGR 530 Query: 206 NVVLSALLE 214 +L Sbjct: 531 GTTFRVILP 539 >gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 836 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 17/242 (7%), Positives = 62/242 (25%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + + + + D + + H+I +P+ + ++++ + + + + L Sbjct: 445 LQRKLENAVVAADSANIAKTQFLATMSHEIRTPMNGVLGMVQVMLSEAKDKQQKENLSLI 504 Query: 57 SMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAV-----DKRV 100 S + + + + + + + + Sbjct: 505 LESGNHLISILNDILDLTKVEQNKIELESCPFNIEQIIAPLRSTYQAVCQEKGIELNIEC 564 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLA 158 + + +++ NL A R V + + + FS++ +G Sbjct: 565 HIDANMTFLGDRNRVRQVMYNLLNNAIKFTERGGVTVVITNNPTTPSLLRFSVQDSGIGI 624 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +I + + V L + + Sbjct: 625 ETSAL-ERIFEPFVQADASTTREYGGTGLGLAIVKQLVEKMGGTIDATSEQGQGTRFEFE 683 Query: 213 LE 214 ++ Sbjct: 684 IK 685 >gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] Length = 740 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 60/234 (25%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H+I +P+ I ELL++ + E + S SA+ Sbjct: 210 ARKRAEEAERIKSAFL--ANMSHEIRTPMNGIIAMSELLEQGTLNPEQRSMTSTISSSAV 267 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105 L + ++ + + + + + + Sbjct: 268 ALLAIINDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAAAKGVEICVESVLEMP 327 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + S + LLN+ A G + + + + G + Sbjct: 328 LMVMGDSARLRQCLLNVIGNAVKFTATGNVHIWLNRSEDGQIVVKVTDTGVGIAEDKLDH 387 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + L L D V L Sbjct: 388 IFEEFSQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPDEGSVFEMRLP 441 >gi|52141898|ref|YP_084929.1| sporulation kinase A [Bacillus cereus E33L] gi|196038501|ref|ZP_03105810.1| sporulation kinase A [Bacillus cereus NVH0597-99] gi|51975367|gb|AAU16917.1| possible sporulation kinase A [Bacillus cereus E33L] gi|196030909|gb|EDX69507.1| sporulation kinase A [Bacillus cereus NVH0597-99] Length = 510 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|29348743|ref|NP_812246.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340649|gb|AAO78440.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1354 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I +++ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYHKILGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + S E Sbjct: 875 ITELLDFRKQEQGHMKIKVSRHNLVNFLYENYLLFLEYASSKQINFKFNKQSDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V I +K G E Sbjct: 935 QKQMQKVVNNLLSNALKHTKAEDTISINVSQEDKYVIIEIKDTGTGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D I + + + E L+ Sbjct: 995 QTERLDSLNTGAGTGIGLALTKGIIELHHGTIRVESEPGKGSRFIITLK 1043 >gi|307292787|ref|ZP_07572633.1| multi-sensor signal transduction histidine kinase [Sphingobium chlorophenolicum L-1] gi|306880853|gb|EFN12069.1| multi-sensor signal transduction histidine kinase [Sphingobium chlorophenolicum L-1] Length = 750 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 28/237 (11%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 +I LS A + RI H+I +P+ I + E L + +L Sbjct: 487 DITQQLSDQRRAAWSDVARRIAHEIKNPLTPIQLAAERLQRRYAGEVTSDKATFTRLTGT 546 Query: 56 SSMSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + VD + + + V Sbjct: 547 IVRQVGDLRRIVDEFSSFARMPKPVFRRERVDDIARHALFLHEVAHPDIRFEYHSVDADV 606 Query: 107 EKIDLSRERAKILLNLFMVAHASL---------PRGGKVTISVQDSKNENIFSLKINGNL 157 E + R+ + L N+ A ++ G V ++V+ + ++ NG Sbjct: 607 EMVCDRRQLGQALTNIVKNAVEAIEPKPAADDGQWRGHVCMTVEHDEGHLQIEVRDNGIG 666 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I++ + + + V + E+ + + + ++ Sbjct: 667 LPPE--RERILEPYMTTRTKGTGLGLAIVKKIVEEHMGEIRFDDAEGGGARVTLRFP 721 >gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 589 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + E+ Q+I Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410 Query: 56 SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S+ + + + + V ++ + Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALQNDISL 470 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E + + ++ NL A GG V+ISV K+ +K +G+ + Sbjct: 471 TEEEFMLDEDKMEQVFTNLIDNALRHTSSGGSVSISVHSVKDGLKIDIKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + D + + Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIP 586 >gi|288554259|ref|YP_003426194.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288545419|gb|ADC49302.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 471 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 17/215 (7%), Positives = 59/215 (27%), Gaps = 22/215 (10%) Query: 22 ICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 I H++ +P+ +E+L + + + L+ S ++ + Sbjct: 248 ISHELRTPLTYFKGYVEILLNGEAKSEEDKVKYLTLLYKQSGRLQRLIQDLFDLSTMEQK 307 Query: 77 ---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM--- 124 + + ++ + + + V + I + + ++ + Sbjct: 308 GFTLQETQISLETVMINALDLIGPSIEQKEIELHVQLSPFPIYILGDEYRLQQVIINLLE 367 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VESTIDSH 179 A GG + + N I + G + + ++ + Sbjct: 368 NAKKYSSAGGVIKVLTYKDNNNCIIEVIDYGIGIPKKDIHRIWERLYRVDKSRSRETGGS 427 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +++ E + +L Sbjct: 428 GLGLTICKRIIELHGGQIIVESEEGKGSTFKIILP 462 >gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 575 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 19/246 (7%), Positives = 63/246 (25%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53 + + ++ ++ + + H++ +P+ A+ +LL + + ++ I Sbjct: 325 LEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAADLSLSGEFTSDLETI 384 Query: 54 RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101 + + + Y D + + ++ ++ I + + Sbjct: 385 NSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVLTVKPTIEKNNNILEIYC 444 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--------NIFSLKI 153 G ++LLNL A G ++ ++ F++ Sbjct: 445 DEHLGTMYADQTRMRQVLLNLLSNAAKFTTNGSIKLTVRREKEDFLAEMPFGAISFTVSD 504 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G ++ + ++ + Sbjct: 505 TGIGMSPSQQLQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQPGLGST 564 Query: 209 LSALLE 214 + L Sbjct: 565 FTVYLP 570 >gi|25029049|ref|NP_739103.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|23494336|dbj|BAC19303.1| putative sensor kinase [Corynebacterium efficiens YS-314] Length = 475 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 60/242 (24%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCS------------RICHDIISPIGAIHNSLELLDEVGIEDE 48 +A + L + ++L + H++ +P+ ++ EL D Sbjct: 230 LANALNIMLEQLQ-ASILSAQEKESQMRRFVGDASHELRTPLTSVKGYSELYHSGATRDA 288 Query: 49 V--MQLIRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + I + + ++ + VD L + + Sbjct: 289 DWVLSKISGEAQRMSVLVEDLLSLTRAEGQQMEKRPVDVLELSLSVASSMRAAWPERSIT 348 Query: 101 QVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 V+ TG + + ++L NL V I + + + +G Sbjct: 349 VVNKTGSLPVVEGDATRLHQVLTNLVNNGLNHGGPDASVEIEISAEGGSVLVRVVDDGVG 408 Query: 158 ARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L ++ + + V + Sbjct: 409 MTAEDAQHIFERFYRTDTSRSRASGGSGLGLAITKSLVEGHRGTITVDSEVGEGTVFTIT 468 Query: 213 LE 214 L Sbjct: 469 LP 470 >gi|87310341|ref|ZP_01092471.1| PAS/PAC sensor signal transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87286840|gb|EAQ78744.1| PAS/PAC sensor signal transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 588 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 24/227 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 ++ S + H++ +P+ A+ E L +++ + I S+ ++ Sbjct: 362 ENMRREFVSSVSHELKTPLAAVRAYTETLQLGAIEDIENRGYFLSQIMDSADRLHELIQD 421 Query: 67 MRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 M + L V + + Sbjct: 422 MLHLARIESREEAFDITEVPIADVIENVLQVQRDVAASRQIALRIHPPEVEISVLGDEEG 481 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 IL NL A P GG V ++ + ++K G +I + Sbjct: 482 VRTILGNLIDNAMKYTPEGGSVDVAWGLEGSHVAITVKDTGLGIPQAAL-ERIFERFFRV 540 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V A + E + L + Sbjct: 541 DKARSREMGGTGLGLSIVKHTAQAMNGGVTVESQVGEGSKFTVRLPR 587 >gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 526 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 50/234 (21%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMS 59 +++ +L S I H++ +P+ I L + + + Sbjct: 282 RDVTAQRREAELQNTFISVISHELKTPVSIIKGYASTLARTDATFSPDMLREGLTVIEEE 341 Query: 60 AIIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 A + ++ + + + + Sbjct: 342 ADRLARQIQDLLDVSRLAAGGARLDRCDFALSSLVADVVRSFAAQVEGHFEFELRLADDM 401 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L NL A P GG + I + + + G E Sbjct: 402 PPIHGDYERLRQVLSNLISNAIKYSPEGGTIRIGARAEAERAVVYVADQGIGIAPEEHEQ 461 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + R+ E L Sbjct: 462 IFQRFYRVDNRLRRQTQGSGLGLYLARAIIEAHGGRIWVESQLGRGARFLFTLP 515 >gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1239 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK+ +S A + + H+I +P+ AI E++ + ++DE + + + SA Sbjct: 647 LAKDKAEQAASAK--ATFLANMSHEIRTPMNAIIGFSEIMMDTEMQDEQRRYMNTINNSA 704 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEK 108 L + + L ++ + + +Q+ Sbjct: 705 KSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAKRKNLDLQLELDPNT 764 Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +IL+NL + G + Q +E FS+ G ++ Sbjct: 765 ASYYLGAPDRIRQILMNLLGNSIKFTEHGYVKLVVKQLDNHELSFSIIDTGIGI-PQDRL 823 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + L RL + + +L Sbjct: 824 DVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEIGSGSCFTMILP 879 >gi|153011100|ref|YP_001372314.1| osmosensitive K+ channel signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151562988|gb|ABS16485.1| osmosensitive K+ channel signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 912 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55 + + L + L + I HD+ +P+ AI + L + D V ++ Sbjct: 670 ERAKLAAEADKLRSALLTSISHDLKTPLAAILGAATTLRDYSSSLPDTDRSDLVATVVDQ 729 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------G 106 S + + G++ + L + +I + ++ V Sbjct: 730 SERLNRFIANLLDMTRIEAGAMKPNLSLHYVGDLIGAALNRAAKILVHHQVNIAVPADLP 789 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L NLF A P +TI + + + G + Sbjct: 790 MVQLDAVLFEQVLFNLFDNAAKYAPENTPITIKAHAAPSRITLEISDRGPGIPPGDLERV 849 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 D + + + V + L Sbjct: 850 FDTFYRVRKGDHVQAGTGLGLSIARGFIEAMGGSIRAGNRHEGTGAVFTIALP 902 >gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] Length = 918 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLARFP 161 ++L+NL A G + +S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] Length = 918 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLARFP 161 ++L+NL A G + +S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1334 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 821 NISHEFRTPLTLIVSQLEMLMERSDIQPLVYSKLVNIHRNTLRMKRLITELLDFRKQEQG 880 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124 + S + D + A K++ + + E + K++ NL Sbjct: 881 FEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDKNLEVWFDVVQLEKVIYNLLS 940 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181 A P GG +++SVQ+ +N + ++ G + F + + + I Sbjct: 941 NAFKYTPLGGTISLSVQEYENSVVVTVSDTGVGIAEESLDKIFDRFYQVDSMNNQKGTGI 1000 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ ++ L Sbjct: 1001 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1033 >gi|260220991|emb|CBA29109.1| Phosphate regulon sensor protein phoR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 420 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 61/237 (25%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 ++++I + + + + H+I +P+ + +E L + + L+ Sbjct: 176 LSRDITALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQTLPLDESERQSYLNLMSQQ 235 Query: 57 SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + + + + D + V Sbjct: 236 ATRMQSLVNDLLTLSRLEGSPAPSGSDLVDMVQLLQQCKQEAHNLSSLVWGKPQDIQFLV 295 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFP 161 S E + NL A P + ++ E S++ G P Sbjct: 296 SDAVAVTGSPSELHSAVFNLIGNAIRYTPADKSIRVHWHKTAEGEGELSVQDTGPGI-AP 354 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E ++ + + V +A + LL E I + Sbjct: 355 EHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVAQRHGAELLIESIPGRGSTFTLR 411 >gi|218781801|ref|YP_002433119.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763185|gb|ACL05651.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 681 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 30/242 (12%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54 +N+ L S L A+ L I HD + + + + EL + + ++++ Sbjct: 289 RNMQRRLSQSHKLEAIGTLAGGIAHDFNNLLSVVLGNAELAVSDTPHDSPAAESLLEIQS 348 Query: 55 LSSMSA---IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + L+F + VD + + + + + I +QV K + Sbjct: 349 AGMRARDVVRQLLEFAKPEGKRKQLVDFIGIVQESIRFLRATIPSTVDIQVKILINKAPV 408 Query: 112 SRER---AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKI 153 + ++++NL A ++ G S+ Sbjct: 409 MADPSNLYQVMINLCTNAAHAMAGRGGVLGVNVARHESNGEDPDFFALAPGEYVRLSVSD 468 Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + + + V + + R+ E + + + Sbjct: 469 TGIGMDAQTQNKIFDPYFTTRDVGEGAGMGLAVVHGILETHGGRIHVESEPEKGSTFTVV 528 Query: 213 LE 214 Sbjct: 529 FP 530 >gi|70731413|ref|YP_261154.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345712|gb|AAY93318.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 815 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 65/242 (26%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + K + + A+ L + HD + + I +S +LL ++ I Sbjct: 432 LRKTEDILRQAQKMEAVGQLTGGVAHDFNNLLTVIRSSTDLLRRNLSEERRQLYIKAISD 491 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111 + A + +G Q +I I +++ + + Sbjct: 492 TVDRASKLTGQLLAYARQQNLRPETFDVGASVQLLAQMINPLIGACIELRIELPQQPCYI 551 Query: 112 SRERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKING 155 + + L+N+ + A ++ + + + SL G Sbjct: 552 HADAGQFDTALINMAVNARDAMQGEGLLVVAVERVAQIPPSASQGAQAGDFVAVSLTDTG 611 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I + + + V A ++ L + L Sbjct: 612 AGIDPQQI-ERIFEPFFTTKEVGKGTGLGLSQVFGFAQQSGGGLAVHSQPGQGTCFTLYL 670 Query: 214 EK 215 + Sbjct: 671 PR 672 >gi|110634091|ref|YP_674299.1| multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA [Mesorhizobium sp. BNC1] gi|110285075|gb|ABG63134.1| cell cycle control histidine kinase CckA [Chelativorans sp. BNC1] Length = 866 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 72/245 (29%), Gaps = 32/245 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 K + + S + A+ L I HD + + AI + +LL + I+ Sbjct: 462 QKALEAQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMASDLLLTNHRPSDPSFPDIMNIK 521 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 ++ A ++ + ++ L D+ I ++ VS + E Sbjct: 522 QNANRAASLVRQLLAFSRRQTLRPEVLNLTDVLADIRMLLSRLVGNDVSLSVEHGQDLWP 581 Query: 114 ------ERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152 + ++++NL + A ++P K + + ++ Sbjct: 582 VKADIGQFEQVIVNLAVNARDAMPEGGQLKIRTRNVTAEDCAKYPYRELQPADYVVVEVE 641 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G P+ +I + + + V + + + + Sbjct: 642 DTGTGI-APDVQKKIFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGFIYCDSEVGKGTTFR 700 Query: 211 ALLEK 215 L + Sbjct: 701 IFLPR 705 >gi|302338730|ref|YP_003803936.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635915|gb|ADK81342.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 626 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 71/228 (31%), Gaps = 17/228 (7%) Query: 3 KNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58 K + L + + L I HD + + I+ E+ L + + Sbjct: 255 KQLEGKLQQTERIHAIGTLAGGIAHDFNNILAVIYGYAEMGLSNSEGKPRFHRYFSEIIR 314 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTGEKI 109 S+ + ++ ++ + + D ++++ V+ + + + Sbjct: 315 SSDRAKELIKQILTFSRMEEGKRDIIDPAPIVKEALKMIRATIPSTVELKAHIESGHHIL 374 Query: 110 DLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +I+LNL A ++ + + IS+ +N ++ G PE +I Sbjct: 375 ANISHIHQIILNLCTNAAYAMKKKPGTLRISLDSIENFCRLQVQDTGVGI-TPETMKRIF 433 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + K + + LL Sbjct: 434 LPYFTTKDVNEGTGLGLSVVHGIVEKYKGSIDVASKPGEGTCFTILLP 481 >gi|298374183|ref|ZP_06984141.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268551|gb|EFI10206.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 1045 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA++ S L + + + H+I +P+ AI +L ++ + + + Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDNLEDKKEFADIIENNN 728 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + Y L L + V + Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788 Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A G N F ++ G ++ Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFYVEDTGCGIPENKRKD 848 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + K + + ++ L Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGKGSKFWFTLP 898 >gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1385 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 61/237 (25%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 + L+ +D S I H+ +P+ I +E L G + V + + + Sbjct: 340 QQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRTQLAGADARVREELEIIHR 399 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103 + + VD D+ V + + Sbjct: 400 NGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVTADLASVFRSAVDKAGLDFRIDCPP 459 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + K++LNL A G ++ ++ G E+ Sbjct: 460 LQEQVYVDRGMWEKVILNLLSNALKFTFDGSIGVTVRARDEHAV-ITVTDTGIGV-SREE 517 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + I V L + + + + + L Sbjct: 518 MPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGEGTRFTIRLP 574 >gi|229080856|ref|ZP_04213373.1| hypothetical protein bcere0023_34990 [Bacillus cereus Rock4-2] gi|228702434|gb|EEL54903.1| hypothetical protein bcere0023_34990 [Bacillus cereus Rock4-2] Length = 516 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 340 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 341 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 506 >gi|254414213|ref|ZP_05027980.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178888|gb|EDX73885.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 531 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 + + +L + + + I H+ +P+ I +S ELL + + Q I L Sbjct: 296 RQALEKEKELGELKSHIITTISHEFRTPLTTIQSSSELLKLYDKKLTEDKKLKHFQKIGL 355 Query: 56 SSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L M+ D L + Q D K Sbjct: 356 CVEHITQLLNDVILIGQSEAGQMKFNPISLEVADLCHDLIEEFQSNLDPRYTLKVFIAES 415 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + K L +L A P+GG +T + ++ ++ G + Sbjct: 416 PIKGLFDEAMLRKSLNHLLSNAVKYSPKGGTITFQLGCHSDKVTVQIQDEGIGIPSIDQS 475 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F G+ STI + V + ++ E ++ L Sbjct: 476 RLFESFYRGSNISTIGGTGLGLAIVKKYVDLHGGQIQIESEVGIGTTVTVTLP 528 >gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31] gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31] Length = 698 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 56/229 (24%), Gaps = 23/229 (10%) Query: 8 NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 L + + + H+I +P+ + ++++ G+ + +++ S L Sbjct: 317 RAERASLAKSQFLANMSHEIRTPLNGVLGMAQVMERSGLGSPHREHLKIIRDSGETLLAI 376 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQVSWTGEKID 110 + + L D + + I R + G Sbjct: 377 LNDVLDLSKIEAGRFELDDHVFDLAETIGAACRPFALLARQKDVAFVKDIAPDALGAWCG 436 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167 S ++L NL A G S+ F+L G F + Sbjct: 437 DSVRLRQVLSNLASNAVKFTHEGQIRLTVGATSEG-LTFTLTDTGIGIAPDRIASLFEKF 495 Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + L L + L Sbjct: 496 VQADSSTTRRFGGTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLP 544 >gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 483 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 21/250 (8%), Positives = 58/250 (23%), Gaps = 39/250 (15%) Query: 4 NICFNLSSMDLVA------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 + S L A + + H+I +P+ A+ +LLD+ ++ Q Sbjct: 192 RREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSHQRQ 251 Query: 52 LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + S + + D + +++ Sbjct: 252 YVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLE 311 Query: 101 QVSWTGEKIDL-----SRERAKILLNLFMVAHAS------LPRGGKVTISVQDSKNENIF 149 V + ++L+NL A + + + Sbjct: 312 FVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEGRVMVELACLPAAPPYPGPFFRC 371 Query: 150 SLKINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ G ++ D ++ + L ++ + Sbjct: 372 TVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREG 431 Query: 205 HNVVLSALLE 214 + + Sbjct: 432 GGSTFTMEIP 441 >gi|307719868|ref|YP_003875400.1| nitrogen regulation protein NtrY [Spirochaeta thermophila DSM 6192] gi|306533593|gb|ADN03127.1| nitrogen regulation protein NtrY [Spirochaeta thermophila DSM 6192] Length = 584 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 18/237 (7%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 + +N L + + + ++ H+I +P+ I + E + ++ ++ + Q Sbjct: 347 LERNREKLLQAEKIATWQDIAQQLAHEIKNPLTPIRLAAERIRRKAEGVEDEALQRVLDQ 406 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--------FIAVDKRVQVS 103 ++ + + ++ + + ++ ++ + Sbjct: 407 STQIILHEVNRLTRLLEEFRDFSRLREPTLTPCNLRSLLSHILSSYDAPQTPYRFHLDTP 466 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158 + L NL A + + +D ++ ++ G+ Sbjct: 467 EDIVIQADEEHLKQALSNLIQNAIDAGAGKEQTITVRLLRTSRDGRSYATIEIRDEGHGI 526 Query: 159 RFPEKFTQI-VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + V + ++ ++ L Sbjct: 527 --PEDQQRLVFLPYYTTKRQGTGLGLAIVQRIVLDHNGKIWFTSEVGKGSTFYIELP 581 >gi|293474311|ref|ZP_06664720.1| conserved hypothetical protein [Escherichia coli B088] gi|291321341|gb|EFE60782.1| conserved hypothetical protein [Escherichia coli B088] Length = 211 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 65/202 (32%), Gaps = 13/202 (6%) Query: 25 DIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTGS 76 +I +P+ +I E G ++ Q++ + L+ ++ + Sbjct: 1 EIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTHLALQA 60 Query: 77 VDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 VD + Q++ + E ++LLNL++ A ++ + Sbjct: 61 VDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQ 120 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 G ++++V +S S+ +G + I + + + V + + Sbjct: 121 HGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTKAEGTGLGLAVVHNIVEQ 179 Query: 193 NKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 180 HGGTIQVASQEGKGSTFTLWLP 201 >gi|229047322|ref|ZP_04192921.1| hypothetical protein bcere0027_33100 [Bacillus cereus AH676] gi|228724064|gb|EEL75410.1| hypothetical protein bcere0027_33100 [Bacillus cereus AH676] Length = 510 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500 >gi|221633256|ref|YP_002522481.1| two-component sensor histidine kinase [Thermomicrobium roseum DSM 5159] gi|221155388|gb|ACM04515.1| two-component sensor histidine kinase [Thermomicrobium roseum DSM 5159] Length = 477 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 57/220 (25%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + + H++ +P+ I L E +E +Q+I S A L + Sbjct: 252 LLANVAHELRTPLTVIQGYAHALREGLLTEAPEREEALQVIASESERAARLLTQLLHLTR 311 Query: 73 --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 VD + + + + + + +S + + + Sbjct: 312 LETGQIALERQPVDLAALVQRVLARHRLEAQQRRITLTATIPDALLVSGDPDLLEQAIEN 371 Query: 125 VAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVES- 174 + +L G + + +++ G P F + G Sbjct: 372 LVQNALVHGRDGMDIVISARSIPATPPRVALTVRDTGPGIPPDALPHLFDRFYRGAPAQN 431 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + L Sbjct: 432 DRNGFGLGLAIVREIVTLHGGTVSVASELGVGTTFTLELP 471 >gi|197304014|ref|ZP_03169046.1| hypothetical protein RUMLAC_02751 [Ruminococcus lactaris ATCC 29176] gi|197296982|gb|EDY31550.1| hypothetical protein RUMLAC_02751 [Ruminococcus lactaris ATCC 29176] Length = 351 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 30/242 (12%) Query: 4 NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQ 51 + + + + VA L S I HD+ +PI AI +E + + ++ + Sbjct: 102 RLRLKVQAEEKVAFDRENKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIRT 161 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKR 99 + ++ ++ + + T + ++ R Sbjct: 162 IYNKANEMNLLINELTLYSKIDTNRIPYNFTTISAKGYFGDCAEDLSVELESKGAEFTYR 221 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLA 158 + + I + +++ N+ + + + L NG Sbjct: 222 NFMDDDCKVIVDPEQLRRVINNIVSNSLKYTDKPKVEITMDVKDVGDFIQIELGDNGRGI 281 Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + I V + E+ + + + ++ Sbjct: 282 AAKDLPFIFDRFYRADASRNSSKGGSGIGLSIVKKIVEEHGGNIWATSEEGVGTTMYFVI 341 Query: 214 EK 215 K Sbjct: 342 RK 343 >gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 678 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL+ ++ + + + + Sbjct: 288 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRGIEAIERSA 345 Query: 62 IRLKFMRLAFGYT---------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + D L + + + + + Sbjct: 346 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIETEFLPVP 405 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG + +SV + + +++ G P Sbjct: 406 MLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPTFLPHI 465 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + L + R+ D ++ L Sbjct: 466 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGTTMAVSLP 519 >gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 835 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ S + + + H+I +P+ AI +LL + + E +L+ S+ +A Sbjct: 316 LARKDAEEASRAK--SDFLATMSHEIRTPMNAIIGINQLLVDTPLTQEQRRLLDDSTTAA 373 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104 L + + + L Q I++ V Sbjct: 374 ESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGT 433 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP- 161 +IL NL A P GG VT+ + +F++ G Sbjct: 434 PRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAK 493 Query: 162 ----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + L + E S L Sbjct: 494 QESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLP 550 >gi|89097112|ref|ZP_01170002.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89087935|gb|EAR67046.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 361 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 65/240 (27%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMS 59 + + L + I HD+ +P+ +I + + + E ++ Sbjct: 121 LKEAERMQKQYERNRQELIASISHDLKTPLTSIKGYVSGIQDGIAGTPEKLERYMNKISR 180 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110 + + +D E+V D D ++S+ E+ + Sbjct: 181 NANDMDALIDELFLYSKLDLEQMPFHFEKVRLDSFFADYIEELSYKMERENGRAELILEG 240 Query: 111 --------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFP 161 + + ++N+ + + + K S + +K NG Sbjct: 241 EQSFLAEADREKLNRAVMNITQNSLKYMDKTSKRIQIRLTSGTEDLEVEIKDNGAGIGKE 300 Query: 162 EKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I D + + + + R+ + L+K Sbjct: 301 DLP-RIFDSFYRTDASRNSATGGSGLGLSIARKIIEGHGGRIWAASEPGKGTSIHFTLKK 359 >gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 419 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 64/229 (27%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60 +S+ L + + + H++ +P+ AI L+ + +I ++ Sbjct: 180 ERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMATATSEEEKKMYTDIISENNERL 239 Query: 61 IIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107 + + + D+ L +++ + + + V + Sbjct: 240 LRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELKGLFGMRLNENPLVTLVCEAHLEPIM 299 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L NL A G + +E F + G E+ +I Sbjct: 300 MHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCHMEGTDEVCFYVSDTGIGI-PEEEQEKI 358 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ H R E +L Sbjct: 359 FSRFTKLDREMQGTGLGLTLSQIIVHNLGGRCGVESEVGKGSTFWFILP 407 >gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 701 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 63/239 (26%), Gaps = 30/239 (12%) Query: 3 KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + + + +R+ H+I +P+ +I ++L + + E + Sbjct: 164 RELSVAMEGLKESSRAKGDFLARMSHEIRTPLSSIMGYTDILFDTCLAPEQTDYVTNIKK 223 Query: 59 SAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 S + + + QV + + R+ Sbjct: 224 SCDVLLGIVNDVLDFSRVESGEIGLDPIEFDPEVLCFECLEMVRTQVDTSRVELLCRICD 283 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLA 158 G ++LLNL A G + S++ G+ Sbjct: 284 CVPGCVRADPNRFRQVLLNLLGNAAKFTVNGVIELSLKVKEKTKTGIVLCASVRDTGSGI 343 Query: 159 RFPEK------FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 F Q+V G + + + +A + E + V + Sbjct: 344 PTAALGVIFKPFQQVVRGRIAKGLRGMGLGLSICRKIARRMGGNITVESREGEGSVFTF 402 >gi|168334601|ref|ZP_02692754.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp. 'N.t. morphotype B'] Length = 609 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 25/216 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR--------- 63 + + H++ +P+ I E L DE + + ++ + Sbjct: 380 FVANVSHELRTPLTTIKTYTETLISGAIDEKETALDFLSVMEKETDRMTTLVHDLLELSK 439 Query: 64 ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + S+ Q + + ++ Sbjct: 440 IDNKQMQLNIQVMDIYSLLLDTIRAQAIQAKCKHHQIKLSYNKNKEYLIEGDPARIGQVF 499 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 N+ A G++ I++ + + + +K G + +I + Sbjct: 500 HNILSNAIKYTEDNGQIKINLSSNDQQVVIKVKDTGIGMSKKDL-ERIFERFYRADKARS 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + + + E H + Sbjct: 559 RKMGGTGLGLSIAKEMVELHGGSIKMESALGHGTTV 594 >gi|303240382|ref|ZP_07326900.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592109|gb|EFL61839.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 488 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 50/217 (23%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H+ +P+ I SLE L ++ Q + + + + Sbjct: 266 FVANVSHEFRTPLTVIRGSLEALSDGTIEDTEDIKRFYQRMLSETRGLERLVSDLLELSR 325 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + ++ + + + + ++ + Sbjct: 326 LQSGKITIHKEHVHIPSLLSDIIKSMQTIADKKEIQIDFITDDNVPPVLGDYDRLRQLFV 385 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177 A P VT++ + ++ G E + + + Sbjct: 386 IFIDNAIKYSPDKTIVTVTTHVKDS-LEILIQDQGYGIAVEELPYVWDRFYKTDKSRKSS 444 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L N + + + L Sbjct: 445 GTGLGLAIAKHLIKLNGGSVELKSAAGKGTTIEIQLP 481 >gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510] gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510] Length = 781 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 57/220 (25%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + H+I +P+ AI L+ D E +I +S + + Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSHLMTIADNAEDEKLYSDIINQNSEILLQLIND 476 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + ++ + V + + Sbjct: 477 ILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +++ NL A G++ + + F +K G + + Sbjct: 537 MQVVTNLITNAIKFT-FKGEIRFGFEVREEYIDFYVKDTGMGISEEKIKMIFERFVKLNT 595 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + E + + Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635 >gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 631 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 294 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E V + Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHA 354 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ + ++ + S+ +G+ Sbjct: 355 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 414 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473 >gi|289580010|ref|YP_003478476.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] gi|289529563|gb|ADD03914.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] Length = 789 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 63/229 (27%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRL 55 + + + ++ A S HD+ P+ + + L+L+D ++ E ++ Sbjct: 557 EQRLEESNKRLEQFAYAAS---HDLQEPLRMVTSYLQLIDRRYTDELDKDGEEFIEFAID 613 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEK 108 + ++ + D + + + + ++ S Sbjct: 614 GADRMRNMIEGLLEYSRIETRGDPFEPIDLDTVLADVRQDLQMCIEESGAEITAESLPRV 673 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 + ++ NL A +V IS + + + S+ G + F Sbjct: 674 EGDPGQLRQVFQNLLSNAIEYSDDTPRVEISAVRNGPKVVVSVADEGIGIDPDDGERVFE 733 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + + E S L Sbjct: 734 IFQSLHAQDEYAGTGIGLAICKRIIERHGGDIWVESDPGEGATFSFTLP 782 >gi|195541945|gb|ACF98145.1| putative FixL oxygen regulated histidine kinase [uncultured bacterium 1062] Length = 451 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 67/233 (28%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR--- 54 A++ L+ ++ + + S + H++ P+ AI N ++ +LD++ E Sbjct: 210 ARSELARLARLNELGEMASTLAHELNQPLSAIANYVQGCRRMLDKIDEEHANRMRGALDE 269 Query: 55 ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107 + +F+ G D + + + + + + Sbjct: 270 AAKQALRAGDIIRHLREFVTRGETDKGPEDINHLVEEAGALALVGSRERGIKSVFDFGAD 329 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161 + + +R +I L + ++ + S ++ G Sbjct: 330 RSKVVVDRVQIQQVLINLMRNAMEAMRDSPSKELIIRTRHVSPEWLRVEVQDTGPGI-AD 388 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + V + + I + + L + + + L Sbjct: 389 EIAPLLFQPFVTTKPNGMGIGLSISRRIIESHGGELTVDRNEAGGATFAFSLP 441 >gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42] gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42] Length = 593 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + + E+ Q+I Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASTEEEKKEIAQIIYD 410 Query: 56 SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S+ + + Y + + + Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDISV 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + + ++ NL A GG V I+ Q K+ +K +G+ + Sbjct: 471 SQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDGLKIDIKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + D + + Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTTFTFYIP 586 >gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 781 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 57/220 (25%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + H+I +P+ AI L+ D E +I +S + + Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSHLMTIADNAEDEKLYSDIINQNSEILLQLIND 476 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + ++ + V + + Sbjct: 477 ILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +++ NL A G++ + + F +K G + + Sbjct: 537 MQVVTNLITNAIKFT-FKGEIRFGFEVREEYIDFYVKDTGMGISEEKIKMIFERFVKLNT 595 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + E + + Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635 >gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] Length = 423 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 S + H++ +P+ +IH E LL++ + E+++ S R+ + ++ Sbjct: 195 SNVSHELRTPLTSIHGYAEALLEDNLDDKELIRRFLTIIESEAARMTRLINDLLDLEKLE 254 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---------------LSRERAKILLNLF 123 S E++ I R + + + +++LNL Sbjct: 255 SGNTQFIFEKINFTEILEHVRNIIEPLTKDYNVDVEFVSPDKIELIGDKDRLTQMVLNLV 314 Query: 124 MVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR---FPEKFTQIVDGN--VES 174 A K V N +K G + F + + Sbjct: 315 DNAVKYTSLKEKGEKKVLVEAYKDNNHVKLIVKDTGVGIPEKAQKKLFERFYRVDKARSR 374 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + L Sbjct: 375 KMGGTGLGLSIVKTIVEKHNGTIEFTSKEGVGTKFIVTLP 414 >gi|189426572|ref|YP_001953749.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422831|gb|ACD97229.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 584 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 30/259 (11%), Positives = 76/259 (29%), Gaps = 46/259 (17%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN-----------SLELLDEVGIED 47 + +N + + + AL L S + H+I +P G I +LELL++ + Sbjct: 305 LRRNQQQLVQADKMAALGVLVSGVAHEINNPNGLILLNMPILKDVCADALELLEQHCPDQ 364 Query: 48 ------------------EVMQLIRLSSMSAIIRLKFMRLAFGY-----TGSVDSLIGLG 84 +++ ++ + ++ ++ ++ + Sbjct: 365 DQIRLGGLPYRRIRQELPQMLDEMQDGARRIKRIVEDLKDFARQDDAALMEPLNLNHVVQ 424 Query: 85 DIEQVI----EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140 +++ + S+ +IL+NL + A +L + Sbjct: 425 AAVRLVERSLRTATNRFEAEYAEPLPLVQGNSQRIEQILVNLLLNACQALTDQNRGIFLR 484 Query: 141 QDSKN---ENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKI 195 + S++ G PE ++ D + + + E+ Sbjct: 485 TFIDHATNSVGVSVRDEGCGI-APEHLDRLTDPFFTTKRESGGTGLGLSVSAGIVKEHGG 543 Query: 196 RLLPEIIDDHNVVLSALLE 214 L ++ LL Sbjct: 544 SLQFSSPPGQGTTVTLLLP 562 >gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 835 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ S + + + H+I +P+ AI +LL + + E +L+ S+ +A Sbjct: 316 LARKDAEEASRAK--SDFLATMSHEIRTPMNAIIGINQLLVDTPLTQEQRRLLDDSTTAA 373 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104 L + + + L Q I++ V Sbjct: 374 ESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGT 433 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP- 161 +IL NL A P GG VT+ + +F++ G Sbjct: 434 PRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAK 493 Query: 162 ----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + L + E S L Sbjct: 494 QESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLP 550 >gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 660 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 264 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPNYKGLSVI 323 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E + + Sbjct: 324 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHV 383 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ +S++ + S+ +G+ Sbjct: 384 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGIAAE 443 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 444 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 502 >gi|228990915|ref|ZP_04150879.1| hypothetical protein bpmyx0001_16760 [Bacillus pseudomycoides DSM 12442] gi|228768852|gb|EEM17451.1| hypothetical protein bpmyx0001_16760 [Bacillus pseudomycoides DSM 12442] Length = 638 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 15/226 (6%) Query: 3 KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58 K S L L + I H+I +P+ A+ + LL + + ++ Sbjct: 408 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMHLLKSSENKKNEHYIDIVLSEIE 467 Query: 59 SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSR 113 D + + + + + + ++ +T + + Sbjct: 468 RIESITNEFMALAKPQALEIKTNDLNVLMKQVVMILQPQAMMNNIQITTEFTSDTSFILC 527 Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ + ++ + I KN+ G + Sbjct: 528 EGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPDKNQVNIRFTDYGCGIEKDRIPY-LG 586 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + +++ ++L E ++ L Sbjct: 587 EPFYSIKEDGVGLGLMICYKMIEKHQGKILIESEVGKGTTINVNLP 632 >gi|222082734|ref|YP_002542099.1| two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel) [Agrobacterium radiobacter K84] gi|221727413|gb|ACM30502.1| two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel) [Agrobacterium radiobacter K84] Length = 903 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 58/233 (24%), Gaps = 21/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLS 56 + + L + L + I HD+ +P+ AI + L + + S Sbjct: 660 RAKLAVEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYLETMSHEDRVDLLSTVVDES 719 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + +G+++ L ++ + ++ E + Sbjct: 720 ERLNRFIANLLDMTKIESGAMEPNYALHYGGDIVGSALRRGAKILARHRVETQMPADLPM 779 Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL A P + + + +F + G + Sbjct: 780 VKVDPVLFEQVLFNLLDNAAKYAPEESTIRLEAWADVDNVVFRIMDEGPGIPPADLERVF 839 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLEK 215 D + + D V + L K Sbjct: 840 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMAGTITAGNRTDRQGAVFTIRLPK 892 >gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1149 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 59/238 (24%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I +P+ I LL E +E+E + S+ Sbjct: 616 LRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSETTLENEQHDYVDTIRASS 675 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSW 104 L + ++ + + +I + D + Sbjct: 676 EALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQATEKGLDVSYVFGKEV 735 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 G + ++++NL A + ++D F + G Sbjct: 736 PGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVRVDPFHIKDDDVILHFKVTDTGIGI-P 794 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ ++ + L + E D Sbjct: 795 ADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMGGSMWVESEDGEGSTFHFT 852 >gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 899 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 57/247 (23%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57 + ++ S + + + + H++ +P+ +I E+L E + ++ ++ Sbjct: 490 LRQSAEQLRQSSNYKSEFLANMSHELRTPLNSILILSEMLAENHENHLSDDELEYAKVIH 549 Query: 58 MSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S + + I + + + + V Sbjct: 550 DSGEDLLNLINDILDLSKVEAGKMDLWFREMDVYEIPQHIQNLFMPIANQKGLELSVDVA 609 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASL---------PRGGKVTISVQDSKNENIFSLK 152 + ++L NL A R Q S S+ Sbjct: 610 NDLAEIFHTDVKRFHQVLNNLLSNALKFTEEGSVTVKVDRARITPAMRQLSDTWITVSVT 669 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G ++ DG + + + + Sbjct: 670 DTGIGIPKNKQNIVFESFQQADGATVRKYGGTGLGLSICREVTKLLGGWITLSSTEGQGS 729 Query: 208 VLSALLE 214 + L Sbjct: 730 TFTVYLP 736 >gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 694 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 54/223 (24%), Gaps = 23/223 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70 + + + H++ +P+ I ELL + + ++ S + Sbjct: 318 SQFLANMSHELRTPLNGIIAMTELLRDHQTDSRGREMAATIISSGHTLEYVVNDILDVAK 377 Query: 71 ------FGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERAKIL 119 D L Q+ I + + +G ++++ Sbjct: 378 IEAGLLQFEAAPFDLDDLLKAATQLHGAAAAAKGITLRLTIHDDASGVYRGDRTRVSQVI 437 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVE--S 174 NL A GG + + E S+ G F + +V Sbjct: 438 SNLISNAVKFTETGGVQVTARRHGDRELCLSVSDTGVGFDRATAARLFQRFEQADVSVSR 497 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLEK 215 + L R+ + L + Sbjct: 498 RYGGTGLGLAICASLTEIMGGRVTVRSVPGKGSTFFAHLALPR 540 >gi|262170360|ref|ZP_06038038.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus MB-451] gi|261891436|gb|EEY37422.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus MB-451] Length = 438 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + L NL + Sbjct: 280 YLKPVNREAFEAVDINEIANDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K ++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGITADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432 >gi|229829768|ref|ZP_04455837.1| hypothetical protein GCWU000342_01865 [Shuttleworthia satelles DSM 14600] gi|229791757|gb|EEP27871.1| hypothetical protein GCWU000342_01865 [Shuttleworthia satelles DSM 14600] Length = 498 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 62/237 (26%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 L L S I HD+ +PI AI E + + ++ ++ I + Sbjct: 257 SRQKLENEKEQLA--LISNIAHDLKTPITAIKGYAEGILDGIARTPEKQEAYVRTIYNKA 314 Query: 58 MSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + ++ I + Q+ Sbjct: 315 GEMDKLINELTTYTKIDTSGIPYNFRHMSARDYFDDCAGELTVELSNQQIRLGYANQLPE 374 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E I + +++ N+ + + G + + V+D + + +G + Sbjct: 375 ETEVIADPEQLQRVISNIVGNSVKYMGHADGHINMLVKDVGDFVQVEMSDDGQGITAADL 434 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S I V + ++ ++ + +L K Sbjct: 435 PYIFDRTFRADSSRNSNTGGSGIGLAVVKKIIEDHGGKVWARSTPGKGTCIYFVLRK 491 >gi|228922347|ref|ZP_04085654.1| hypothetical protein bthur0011_33370 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837402|gb|EEM82736.1| hypothetical protein bthur0011_33370 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 516 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 340 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 341 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIKLP 506 >gi|255282095|ref|ZP_05346650.1| sensor histidine kinase ResE [Bryantella formatexigens DSM 14469] gi|255267414|gb|EET60619.1| sensor histidine kinase ResE [Bryantella formatexigens DSM 14469] Length = 348 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 51/211 (24%), Gaps = 17/211 (8%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------------RLSSMSAIIRLKF 66 + H+ +PI +I LL + E S + Sbjct: 134 NVSHEFKTPISSIAGYATLLQNHSLSAEKRDHYIEKILDNSGKLSVLCSSILMLSRLENQ 193 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + +D I + + + ++ N+ A Sbjct: 194 ETVMHKKPYRLDEQIRRCILLFEARWTQKNIEFDISLPRQLFCGNEQLMEQVWSNIIDNA 253 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQF 183 P G + +S+ ++ ++ G F + G+ D + + Sbjct: 254 IKHSPDNGVIRVSLAKTRTHLAVTIADQGAGIAPEVQRHIFEKFYQGDSSRKADGNGLGL 313 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + + + L Sbjct: 314 ALVKRIVDLCQGTVSVKSAPGSGAAFTVTLP 344 >gi|329940075|ref|ZP_08289357.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] gi|329300901|gb|EGG44797.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] Length = 594 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 61/216 (28%), Gaps = 18/216 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL----- 69 ++ S I H++ +P+ I L+ + + +++ ++ + + +++ Sbjct: 378 VMVSDIAHELRTPLTNIRGWLDAAQDGLAEPDADLLASLQEEAGLLQHIVDDLQVLAAAD 437 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + V+ V ++L NL Sbjct: 438 AGTLRLHPRVLDLRELVEQTMSAHRATARAGGVETAVLAPGRLTVTADPVRLRQVLGNLL 497 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178 A P GG+VT+ + ++ G + F + + Sbjct: 498 SNAIRHTPPGGRVTLGARRVPGAVAIEVRDTGCGIGEEDLPRVFDRFWRAERSRSRRTGG 557 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + +L V + L Sbjct: 558 SGLGLSIVRQLVRAHGGDVLVRSRPYEETVFTVRLP 593 >gi|310824646|ref|YP_003957004.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397718|gb|ADO75177.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 473 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 58/219 (26%), Gaps = 22/219 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG---- 72 + + HD+ +P+ + S ELL +L + + R+ Sbjct: 250 QFLAGVAHDLRTPLNTLKLSTELLLRAPTPPPPEKLRESLLRISAQLDRLNRMVGDLLDQ 309 Query: 73 ----------YTGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSRERAKILL 120 D + ++ ++ + ++L Sbjct: 310 TRIEAGNLELRLEDTDLCTLVREVAELHRPLSQQHQIELTVPDGPVPVRGDPTRLIQVLT 369 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176 NL A P GG+V + ++ S+ E + S+ G E + +I S Sbjct: 370 NLLSNAIKYSPLGGRVRVLIEQSQEEVLLSVSDEGVGIPPGE-YERIFAPFKRSASASAE 428 Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L Sbjct: 429 LPGIGLGLSVSRRIVRAHGGNIEVVSQEGAGSTFRVRLP 467 >gi|262273558|ref|ZP_06051372.1| osmolarity sensory histidine kinase EnvZ [Grimontia hollisae CIP 101886] gi|262222536|gb|EEY73847.1| osmolarity sensory histidine kinase EnvZ [Grimontia hollisae CIP 101886] Length = 447 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 65/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + + HD+ +P+ I + E++ + + + +++ + + ++R Sbjct: 229 EEDRALLMAGVSHDLRTPLTRIRLATEMMSPQDSYLAESMIKDTEECNEIINQFMDYLRS 288 Query: 70 AF-GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +D + D+ + V+ G + + NL + A Sbjct: 289 VQLQDMSEIDLNLVAEDVSVADGATGHELEVVKGELVGNLEANEVAIRRAVTNLVVNAVR 348 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 K++ + +++ NG + G+ + + Sbjct: 349 YGNGWVKISTGTSADRRHQWIAVEDNGPGIAADQVETVMQPFTRGDTARGSEGTGLGLAI 408 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ L + +L Sbjct: 409 VKRIVEQHNGALKLSERSQGGLRAQIVLP 437 >gi|330807015|ref|YP_004351477.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375123|gb|AEA66473.1| Putative histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 744 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQ 51 +A+ + ++ L + + HD+ SP+ I ++ + D + Sbjct: 506 LARQVRKERQAVQARDELVAVVSHDLRSPMTVISMLCGMMRKAFSSDGSHSSKRISSAID 565 Query: 52 LIRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 ++ ++ L+ + + + + A+D Sbjct: 566 TMQQATSRMNALLEDLLDTSRIDAGRYTINPQPMDVSQIFEDACSLLTPLATAKAIDISF 625 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++L NL A P+ G V IS +E +FS++ G Sbjct: 626 HAEPNLRINADPERLFQVLSNLIGNAIKFTPQQGTVGISAMSVGDEIVFSVRDTGEGI-A 684 Query: 161 PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE+ + + + + Y + + +L E + K Sbjct: 685 PEQLPHVFERYWTTKEGNPNGTGLGLYISKGIVQAHGGKLHAESQPGQGSEFRFTVPK 742 >gi|304397940|ref|ZP_07379816.1| Osmosensitive K channel His kinase sensor [Pantoea sp. aB] gi|304354651|gb|EFM19022.1| Osmosensitive K channel His kinase sensor [Pantoea sp. aB] Length = 891 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 18/227 (7%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56 + L L S + HD+ +P+ + E+L ++ + + Sbjct: 652 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 711 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 L R+ G + + VQ+ + + + Sbjct: 712 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGHEVQLDLPDDIVLIKG 771 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + ++ NL + I + + ++ G + F + Sbjct: 772 DSTLLERVFTNLIENSLKYAGNSAPRGIRAWRAASRLEIAVWDGGPGIAEEDLTRIFDKF 831 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 GN ES + + + + ++ E + L Sbjct: 832 WRGNKESAVPGVGLGLAICKTIIESHGGQIWAENRPEGGAAFRLSLP 878 >gi|258623619|ref|ZP_05718612.1| sensor protein TorS [Vibrio mimicus VM573] gi|258584107|gb|EEW08863.1| sensor protein TorS [Vibrio mimicus VM573] Length = 968 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL E + +++ + S Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L NL + + IS F+++ +G + Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDLEGQGIRFAVEDSGIGIAEQDQA 636 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + L L S L Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFTLP 689 >gi|261368039|ref|ZP_05980922.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176] gi|282570027|gb|EFB75562.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176] Length = 482 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 19/231 (8%), Positives = 65/231 (28%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 MA+++ + L S + H++ +P+ +I +E + + + + + + Sbjct: 242 MAEDLA---ETDRLKNEFISSVSHELRTPLTSIKGWVETIKNIDDPTNENYRRGLAIIGT 298 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------- 104 + ++ + + ++ ++ + V+ Sbjct: 299 ETDRLYTMVEELLDFSRLQNGIQLHCEVLDLVAEATDAALFVEARIRQEGLHFVYEEPPE 358 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ +N+F A GG + +++ + +++ G + Sbjct: 359 PYPVWADPARLRQVFVNIFDNAIKYSDPGGTIFLTITRTPETVTAAVRDQGRGIAPEDLD 418 Query: 165 TQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V + ++ +S L Sbjct: 419 KVKQKFFKAKNSVRGSGIGLAVVDEIVQALGGKVEIASALGQGTTVSITLP 469 >gi|255284210|ref|ZP_05348765.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] gi|255265235|gb|EET58440.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] Length = 368 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 61/213 (28%), Gaps = 18/213 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF-------- 71 S + H+ +P+ I+ + +LL++ + E + + + + RL + Sbjct: 143 SDVSHEFKTPLSVIYTNAQLLEKEELPKETRRECTRNILRSSERLGNLITNMLKLNKLEK 202 Query: 72 GYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 V L + ++ ++ + + NL Sbjct: 203 QVIQPVSQSYDLCRQLSDCALQFENQWEEKNIEFEAELEERVTIMADEGLLELVWTNLLS 262 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P GG +T+S S+ G F + G+ + + + Sbjct: 263 NAVKFTPSGGTITLSQVSDGENVTVSVADTGCGMDEETVKHVFDKFYQGDASHSTQGNGL 322 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + E V + L Sbjct: 323 GLALVKRILQLSDGSITVESTAGKGSVFTVTLP 355 >gi|220702379|pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of Geobacillus Stearothermophilus Kinb With The Inhibitor Sda gi|220702380|pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of Geobacillus Stearothermophilus Kinb With The Inhibitor Sda Length = 244 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 14/221 (6%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----SMS 59 + + + A+ L + I H+I +P+ A ++L++E + + + + Sbjct: 4 MVIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRA 63 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRE 114 I ++ A + + L +IE+VI+ + V I + Sbjct: 64 EAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGEREK 123 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + LLN+ A ++P GG + + V + + G E+ ++ + + Sbjct: 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGM-TKEQLERLGEPYFTT 182 Query: 175 T-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + E +S L Sbjct: 183 KGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLP 223 >gi|206889934|ref|YP_002248110.1| sensory box histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741872|gb|ACI20929.1| sensory box histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 363 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 64/203 (31%), Gaps = 11/203 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT------- 74 I H+I +P+G+I ++ E E R S S + + +T Sbjct: 160 IAHEIRNPLGSIELFANMISEDLKESIHGDYARRISSSVRMLRNTLENMLSFTRGINPKK 219 Query: 75 ---GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 + + + Q + + ++ ++ S + L+NL + A+ ++P Sbjct: 220 TSVCINELIEEIIKEFQELFSRVGIEVCNKIKDRFVIYLDSSLIRQALINLIVNAYQAMP 279 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191 GG +TI +K G E +I D + + + Sbjct: 280 DGGTITIDAYKDGEFVKLIIKDTGQGI-DSEIVEKIFDPFFSTKDRGTGLGLSITNSIIS 338 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + R+ + + L Sbjct: 339 AHGGRIEVKSKISKGTEFAIYLP 361 >gi|162451219|ref|YP_001613586.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56'] gi|161161801|emb|CAN93106.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56'] Length = 498 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 62/219 (28%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ AI + E L + E + +I + + + Sbjct: 278 FVANVSHELRTPVTAISTAAETLQLGALKDPHEAAEFVDVIDRHAKRLRHLVDDLLDLSK 337 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 + +D + + Q++ + + + +R ++L+N Sbjct: 338 IEAKNFRLALSELDIAPAIEHVTQLLAEAARRRRVTLTVDASALPPVRCDRRALEQVLMN 397 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176 L A G VT+ + + ++ +G F + + Sbjct: 398 LLDNAIKYAGEGAHVTVRARSVDQQVTLAVADDGPGIPPHHLGRIFERFYRVDAGRSRDL 457 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + E + L + Sbjct: 458 GGTGLGLAIVKHLVELMNGSIEVESAIGRGTQFTVRLAR 496 >gi|229151836|ref|ZP_04280035.1| hypothetical protein bcere0011_33780 [Bacillus cereus m1550] gi|228631649|gb|EEK88279.1| hypothetical protein bcere0011_33780 [Bacillus cereus m1550] Length = 478 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 63/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 243 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 302 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 303 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 362 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + +N + + G ++ +++ Sbjct: 363 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLENNFILIRIIDEGCGI-PEDRISRL 421 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 468 >gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 833 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 60/246 (24%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L A SR + H+I +P+ I +LL + I E + + Sbjct: 154 RKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTDLLLDSTIAGEQREYL 213 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------------- 99 + SA L + ++ + + I+ + ++ R Sbjct: 214 QTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETCRALALRASQKGLELY 273 Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKI 153 V +IL+NL A G +N F ++ Sbjct: 274 YDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRVRCVQRNGGAASIEFLVRD 333 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G + + + L R+ + + Sbjct: 334 TGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRIGVDSVPGAGSR 393 Query: 209 LSALLE 214 L Sbjct: 394 FEVTLP 399 >gi|225181716|ref|ZP_03735155.1| PAS/PAC sensor hybrid histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225167587|gb|EEG76399.1| PAS/PAC sensor hybrid histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 734 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 68/235 (28%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56 + ++ +++L I HD + + I L ++ + ++ I + Sbjct: 355 EEEIIKAEKLESISILAGGIAHDFNNILTIILGYLSVVRKPFNAGKSIETYSHLKEIEKA 414 Query: 57 SMSAIIRLKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ AI K + V + + + Sbjct: 415 TIQAIGLTKQLLTFAKGGAPVKSAASIEELIEETVMFTSSGSNVRCQFAFADDLMPVEVD 474 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLAR 159 + +++L NL + A ++P GG + ISV++ N S++ G Sbjct: 475 RGQISQVLNNLIINAVQAMPGGGTIFISVENIAVDKTSSLPLQEGNYIQISVRDEGEGI- 533 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E QI + + + ++ + + + L Sbjct: 534 PEEVRRQIFTPFFSTKSTGTGLGLTTSYSIIKQHGGHITVDSQVGAGATFAFYLP 588 >gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM 17393] gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM 17393] Length = 534 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 51/227 (22%), Gaps = 18/227 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK NL + L + + H+I +P+ AI +L D+ +++++ ++ Sbjct: 303 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASMLVEEDDKKERQGYIEIMQENTE 360 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGE 107 + + + + + I ++ Sbjct: 361 LLLQLISDILDLSKIEAGTLDFNMGYLNIKDFCEDILRGYEIKEDKPVPVLLASNLPDYR 420 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166 + +++ N A G FS+ G Sbjct: 421 IYTDKKRLMQVVTNFINNALKFTSEGQITLEYHFKEDTNEIEFSVTDTGIGIAPDAVGQV 480 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + E Sbjct: 481 FDRFVKLNTFSKGTGLGLSICRSIIEHLGGTIGLESEVGVGSRFWFT 527 >gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 567 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 61/239 (25%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + + + + + H+I +P+ AI ++L + + + + ++R ++ Sbjct: 172 LKVSREMAVVANRAKSEFLANMSHEIRTPMNAILGFVDLTLATELNAEQSKYLGMVRSAA 231 Query: 58 MSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S + + SV + + + + ++ Sbjct: 232 QSLMRLLEDVLDISKIESGQLVVEQQPFSLASVLRSAVDLLSVKASDKALQLRYQIPAGV 291 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160 + + ++L+NL A G + + F ++ G Sbjct: 292 PEVLVGDANRLTQVLVNLLSNAVKFTDAGEVVLGLDILEQDHRQISLRFYVRDTGIGIAP 351 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L R+ E L Sbjct: 352 DRLEAVFEKFYQVDSSSTRRFGGSGLGLAIVRQLVENMGGRVWVESELGKGSTFYVTLP 410 >gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 969 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 58/214 (27%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR----------- 63 + + HD+ +P+ AI +L ++ I S Sbjct: 743 AIVSHDLRTPLSAIIMGARVLGGGAAEDPERVRATATRIASSGERMNRLIGDLLDLASLE 802 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNL 122 + + D+ + + +D R + + + +R ++L NL Sbjct: 803 RGRLSMRRSAHAPSTLAREAADVIRPAAEAKGLDVRWRAADDLPLVPCDHDRILQVLGNL 862 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHD 180 A + G V I ++ +F ++ G E + Sbjct: 863 TSNAVKATAS-GHVAIGASARGDQVLFEVQDTGPGIPSEELPHVFDRFRRGRSAAYAGTG 921 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + R+ E V+ L Sbjct: 922 LGLAIARALVEAHGGRIWAESTPGLGTVVRFSLP 955 >gi|262392681|ref|YP_003284535.1| nitrogen regulation protein NR(II) [Vibrio sp. Ex25] gi|155172|gb|AAA27524.1| nitrogen regulator 1 [Vibrio alginolyticus] gi|262336275|gb|ACY50070.1| nitrogen regulation protein NR(II) [Vibrio sp. Ex25] Length = 348 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIVIERDYDPSLPEILMDA 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I + K + NG Sbjct: 236 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347 >gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum H04402 065] Length = 522 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 297 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 356 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + R+ + I + + Sbjct: 357 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 416 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G E +I + Sbjct: 417 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 475 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 476 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSQPKKGTKFIVKIP 518 >gi|298530845|ref|ZP_07018247.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfonatronospira thiodismutans ASO3-1] gi|298510219|gb|EFI34123.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfonatronospira thiodismutans ASO3-1] Length = 555 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 75/226 (33%), Gaps = 13/226 (5%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 M + S L A+ + + H+I +P+ ++ + + E + + Sbjct: 326 MRELESSLEHSRRLAAVGRFAAGLAHEIRNPLSSLKGFAQYFQQKFSGEEPASEYARTMV 385 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + L + + + VQ+ ++++ Sbjct: 386 SEADRLNRVINDLMYLARPRSLQRVELNLADLFQEVRTLLEMDLRSGSVQLILEPGEVEV 445 Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +R + +LNL + + + +GG++++ K+ ++ G + + + Sbjct: 446 KADRDLIKQAVLNLVLNSLQASRQGGEISLRATREKDRVRIEVQDRGCGMDAATR-EKAL 504 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + + ++ ++ LL Sbjct: 505 EPFFSAREKGSGLGLAIVHRIVQDHGGEIEIDSMEGKGTRVALLLP 550 >gi|224367903|ref|YP_002602066.1| two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein) [Desulfobacterium autotrophicum HRM2] gi|223690619|gb|ACN13902.1| two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein) [Desulfobacterium autotrophicum HRM2] Length = 879 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 69/246 (28%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54 K + ++ + AL L I HD + + AI EL E++ ++ Sbjct: 489 RKTMESHIQQTQKMEALGTLAGGIAHDFNNILSAIIGFTELAKLGAAENKRLKDNLDNVL 548 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R A + + + + + + + I + +Q + Sbjct: 549 TAGLRARELVKHILAFSRKADVHKDIIQIVPLIKESLKFLRASIPANIDIQTRFMITDAT 608 Query: 111 ---LSRERAKILLNLFMVAHASLP----------------RGGKVTISVQDSKNENIFSL 151 + ++L+NLF A ++ + + ++ Sbjct: 609 ILADQTQIHQVLMNLFNNAAYAMKEKGGVLAVELDNFDMVTDIPPQFNELQPGSYVRLNI 668 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G +I + + + + + + K + D Sbjct: 669 SDTGVGI-EKHVMERIFEPFFTTKVRGEGTGMGLSLSYGIIKAMKGHISVSSEPDMGTTF 727 Query: 210 SALLEK 215 L+ K Sbjct: 728 QILIPK 733 >gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 923 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 57/239 (23%), Gaps = 29/239 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK S + + + H+I +P+ + ELL +E Q + S Sbjct: 258 LAKEAAEAGSQAK--SEFLATMSHEIRTPMNGVLGMTELLLGTELEPTQRQFVEAVERSG 315 Query: 61 IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 L + ++ D L + ++ + Sbjct: 316 KHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLELVADLPPDE 375 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160 +I+ NL A G + +D+ + + G Sbjct: 376 KLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALVVSDTGIGIPL 435 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I + + L R+ E + L Sbjct: 436 -DAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGKGAAFTVEL 493 >gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH 1] Length = 1739 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ + + + + H+I +P+ AI ELL ++ + E + ++ + Sbjct: 1349 LRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQDIIQDTEGLHHLQTIRRNG 1408 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104 L + + + + I + + Sbjct: 1409 DYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKEAGLELTVEYGQQI 1468 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163 ++ ++L+NL A P G + +S+ + G PE+ Sbjct: 1469 PASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMESEPIRLCIDVIDTGIGI-TPEQ 1527 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 Q+ V T + LA + + + Sbjct: 1528 QEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGSTFTL 1581 >gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 444 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 70/244 (28%), Gaps = 31/244 (12%) Query: 2 AKNICFNLSSMDL--VALL----CSRICHDIISPIGAIHNSLELLDEV-------GIEDE 48 + + + L + L + + H++ +P+ AI ++L D Sbjct: 155 RQQEQIQMQNFKLLEASRLKSHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSNQQADM 214 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103 V +++ ++ + + + G +D + D+ +VI + + + + Sbjct: 215 VERILNNGKHLLMLLNEVLDFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLADAKKLSL 274 Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + +IL NL A G + N+ ++ G Sbjct: 275 LVQNDLQNPFIFNDPVRIRQILTNLLSNAIKFTESGEIWVEVKELPTNQVAIIVRDTGIG 334 Query: 158 ARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F +I + + V L ++ E + Sbjct: 335 IASRD-FKRIFEAFRQVDQTITRKYPGTGLGLAIVDSLVRMMGGKIFLESKLGIGSMFKI 393 Query: 212 LLEK 215 L + Sbjct: 394 ELPR 397 >gi|332704946|ref|ZP_08425032.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332356298|gb|EGJ35752.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 395 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 60/220 (27%), Gaps = 22/220 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIR------ 63 A S + HD +P+ I LL + + ++LIR + + Sbjct: 168 AEFVSMLSHDFRNPLNTILLCSGLLQDKEEQLPQEKKLVHLRLIRSAIKNMAQLLDEVSL 227 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 +D + + ++ + ++ + GE + + + Sbjct: 228 ISKADSGRLLCQPTRLDLKRFCHQLVEELQISTNNNHQLVFTSQGELREALWDERLLRHI 287 Query: 122 LFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--- 175 A P GG V + IF ++ G PE Q+ ++ Sbjct: 288 FSNLLTNAIKYSPTGGTVQFELIAQTECVIFRIQDQGMGI-PPEDQQQLFQPFHRASNVG 346 Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + + + L Sbjct: 347 TIPGSGLGLAIVQQCVEAHGGEISLKSQLGDGTTFTVSLP 386 >gi|325845381|ref|ZP_08168680.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] gi|325488596|gb|EGC91006.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] Length = 444 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 59/216 (27%), Gaps = 21/216 (9%) Query: 21 RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67 + H++ +PI AI E+L ++ + DE + +I + +K + Sbjct: 226 NVSHELKTPISAIKGCTEILLNGAKNDPAVLDEFLTMISDENNRMEQLVKDLLLINRYEF 285 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 ++ + L + +++ + + LNL Sbjct: 286 DQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLEAPEQYQIEGDYIQLKHCFLNLLT 345 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--GNVESTIDSH 179 A +T+ + + G P F + Sbjct: 346 NAIHYSGENTTITVKAKAVGEYYQIQVIDQGIGIPSADLPHIFERFYRVDRARSRHTGGT 405 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +K R++ + + L K Sbjct: 406 GLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPK 441 >gi|323463630|gb|ADX75783.1| signal transduction histidine kinase HssS [Staphylococcus pseudintermedius ED99] Length = 463 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 17/228 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L +D + + H+I +P+ IH+ L L + + + I Sbjct: 228 TMRLELKQLDDMRQHFVQNVSHEIKTPLTHIHHLLTQLQQEHTTPQQARYIERIYDETHR 287 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110 + +R + + D + ++ + I Sbjct: 288 LSQLVRQLLLLSELDNDTHLQFDDTFLANACILDILKHENYAIDQKNQVLLYDLEAVTIR 347 Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A+ N+ A G + I + ++ I ++ +G +I + Sbjct: 348 GNSRLIAQAFENVIRNAIKYTEAFGTIEIDLTAENDQMILKVRDDGPGMNDA-VKQRIFE 406 Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S DS+ + + + R+ E DH + L + Sbjct: 407 RFYKSSSHTDSNGLGLAISKSIIERHGGRIEVESKIDHGTTFTIFLPR 454 >gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] Length = 1053 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 65/240 (27%), Gaps = 29/240 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 ++ + + ++ + + H+I +P+ I ELL + G+++E + + + S+ Sbjct: 376 KQDKEAAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTGLKEEQQEFVEIIEKSSE 435 Query: 62 IRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 L+ + + E I + + Sbjct: 436 NLLEIINNILDLSKIESNKLEIEDVIFNPIEEFESAVDVYAVRASEKHIDLGCFIDPELE 495 Query: 106 GEKIDLSRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++++NL A + S Q+ F ++ +G Sbjct: 496 QPLKGDPTKIKEVVINLLSNAVKFTSSSGAINVDIRKLQSPQEGTTRVKFEVQDSGIGV- 554 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ ++I + + + +L L Sbjct: 555 TSEQKSRIFEAFSQADTSITRKYGGTGLGLTISARFIELMGGQLDLHSEPGEGTTFFFTL 614 >gi|296283973|ref|ZP_06861971.1| two-component signal transduction histidine kinase [Citromicrobium bathyomarinum JL354] Length = 421 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 64/219 (29%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIRLKFMR--- 68 + H++ +P+ +I +E L E + + + I + + + Sbjct: 171 FVANASHELRTPLSSIIGYVETLSENPEDIDQATARKFLDTIHREAQRLQNLVSDLMSLS 230 Query: 69 -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNL 122 V + + +++ + S E + ++ +++ NL Sbjct: 231 RVEAEKHDRPEQPVPLNALVERAAREGAGPNRIERLAFEASEDFEVLGDPQQLEQLVRNL 290 Query: 123 FMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFT---QIVD--GNVESTI 176 A G VT+ + +S E ++ G+ + Sbjct: 291 VDNALKYGREGTPVTVRLSESALGEAKLEVEDRGDGIEAEHLPHLTRRFYRTDPGRSRQS 350 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + RL + H +++ L + Sbjct: 351 GGTGLGLAIVKHIVERHHGRLDIDSEVGHGTIVTVRLPR 389 >gi|296134571|ref|YP_003641813.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia K12] gi|295794693|gb|ADG29483.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia K12] Length = 914 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 79/236 (33%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51 A++ + + + L S + HD+ +P+ A+ + E+L D + + + Sbjct: 657 AQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLAAHPPGDAATLHGQALS 716 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSW 104 L++ S A + + +A +G V +E+++ + +Q+ Sbjct: 717 LLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDL 776 Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-- 159 + + + ++L+NL A P G + + + E ++ G Sbjct: 777 PADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAG 836 Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F G+ ES I + + + R+ + + L Sbjct: 837 RERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892 >gi|229092613|ref|ZP_04223764.1| hypothetical protein bcere0021_33750 [Bacillus cereus Rock3-42] gi|228690766|gb|EEL44542.1| hypothetical protein bcere0021_33750 [Bacillus cereus Rock3-42] Length = 516 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 340 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 341 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|225862322|ref|YP_002747700.1| putative sensor histidine kinase [Bacillus cereus 03BB102] gi|225786427|gb|ACO26644.1| putative sensor histidine kinase [Bacillus cereus 03BB102] Length = 337 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + K S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 95 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 154 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + I + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E I + K Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 331 >gi|225387740|ref|ZP_03757504.1| hypothetical protein CLOSTASPAR_01510 [Clostridium asparagiforme DSM 15981] gi|225046158|gb|EEG56404.1| hypothetical protein CLOSTASPAR_01510 [Clostridium asparagiforme DSM 15981] Length = 418 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 60/221 (27%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H+ +P+ I E+L + + +I + + + Sbjct: 191 FVSNVSHEFRTPMTLISGYAEMLRMWDEVTKEERTKALDVIEQETKRLKKLVSELLTLSR 250 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRERAKIL 119 VD + I +ED + VS + ++L Sbjct: 251 LDRQEGEERNLPFVDVEAVIEQILWSLEDMANKRRVELVSDVEVDYPVLRANEQFFYQML 310 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 LNL G+V + ++ N ++ +G +I D Sbjct: 311 LNLIENGIKYNREQGRVKVWARNDGNVLRITVSDSGRGIEEKH-QERIFDRFYRIDEDRN 369 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + I V + + + R+ E L Sbjct: 370 SRHGGNGIGLSIVSSVVEQMRGRIRVESRPGEGSEFKIELP 410 >gi|225567890|ref|ZP_03776915.1| hypothetical protein CLOHYLEM_03963 [Clostridium hylemonae DSM 15053] gi|225163291|gb|EEG75910.1| hypothetical protein CLOHYLEM_03963 [Clostridium hylemonae DSM 15053] Length = 889 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54 K L L A L I HD+ +P+ +I + E L + Sbjct: 651 RKEADVKLQKEQLRANLLRSISHDLRTPLTSISGNAETLMGNDSELSRQQRNAIYKDIYD 710 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTG 106 S + + + GS++ I + V V+ Sbjct: 711 DSMWLVNLVENLLSVTRIENGSMELNIQGEILEDVITEALRHVNRRGREQVITVECDELL 770 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++NL A P ++ I + ++ + ++ NG + E + Sbjct: 771 MARMDVKLMLQVIINLTDNAVKYTPPHSEIMIKARRHGDKAVVTVADNGPGIKEDE-KDR 829 Query: 167 IVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + + H V LE Sbjct: 830 LFQMFYTSSNTVSDGRRGMGLGLTLCQAVVGAHGSEIKVYDNVPHGAVFRFELE 883 >gi|46581618|ref|YP_012426.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|120601223|ref|YP_965623.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|46451041|gb|AAS97686.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|120561452|gb|ABM27196.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|311235260|gb|ADP88114.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 565 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 21/230 (9%), Positives = 65/230 (28%), Gaps = 27/230 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELL--DEVGIEDEVMQLIRLSSMSA 60 L S + AL L + + H++ +P+ I + +LL ++ +L+ + Sbjct: 319 LQSSKMAALGKLAAGVAHEVNNPLMLIRENAGWIKDLLVEEDPAAMRNHKELVTAADKIE 378 Query: 61 IIRLKFMRLAFGY----TGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + + Sbjct: 379 MHVDRAKGVTHRMLGLARRLEPLQDDVCVNLLTEQTIKFLETEALHRHITLVKELADDLP 438 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKF 164 ++ + ++ L + ++ G+ + +E S+ G PE Sbjct: 439 PITTDATQVQQVLLNILDNAIDAVGRDGTITIRTGAAPDRSEVFVSVSDTGEGI-PPELL 497 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++I D + + + + + R+ + Sbjct: 498 SRIFDPFYTTKKVGEGTGLGLAICHSILEKLGGRIHAASAPGQGATFTVT 547 >gi|323359460|ref|YP_004225856.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] gi|323275831|dbj|BAJ75976.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] Length = 471 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 60/225 (26%), Gaps = 14/225 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58 M + ++ + L + H++ +PI + LE++D + E L Sbjct: 223 MLDRLAMSVDAQR---QLLDDVRHELKTPITIVRGHLEMMDPADPHDVAETRNLGIAELD 279 Query: 59 SAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + T +D + +++ ++ G Sbjct: 280 RLSRLVDDIDALAVVEAGALTTEVIDVAALTDRVGELVSAIPHHTWTIESRGRGSIHGDH 339 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD 169 + L L A P G + I + ++ +G F + Sbjct: 340 DRLIQAWLQLADNAAKYTPDGTPIEIGSNIGDSNVDLWVRDHGPGIPPAARHRVFRRFDR 399 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + V +A + ++ L Sbjct: 400 ISTRRGVEGSGLGLSIVDAIAKAHDGYCSVSDTPGGGATVTLHLP 444 >gi|283852085|ref|ZP_06369359.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572475|gb|EFC20461.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 724 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 31/243 (12%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50 KN+ L S + A+ L I HD + +G I E+++ + D ++ Sbjct: 325 RKNLEMRLRQSQKMEAIGTLAGGIAHDFNNILGIIMGFAEMIEAEAEQDGSLARRVDHIL 384 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 R + + L F R + + + ++I + + S + Sbjct: 385 SACRRARDLVLQILTFSRQNDQEATPLHVGPLVKETLKLIRATVPNTIALVESIRPGRDT 444 Query: 111 LSRERAKILLNLFMVAHASLPRGG-----------------KVTISVQDSKNENIFSLKI 153 + E +I L + + + ++ Sbjct: 445 ILAEPTQIQQILMNLCANAAHAMRETGGVLEVGLEEAPAGLCPIPGEANPGECLRLWVRD 504 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G P+ ++ D + + + + + + + + Sbjct: 505 TGPGI-GPDILERVFDPFFTTKKPGEGTGMGLSVAHGVVRKYHGDIKVKSDPGQGALFDV 563 Query: 212 LLE 214 L Sbjct: 564 YLP 566 >gi|265765063|ref|ZP_06093338.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263254447|gb|EEZ25881.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161449|emb|CBW20989.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 549 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K ++ L + + H+ +P+ I + +EL+ + + Sbjct: 9 EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 66 Query: 62 IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105 ++K + D + + A K + Sbjct: 67 QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 126 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + K+L NL A +P G+++I + ++ + ++K +GN E Sbjct: 127 ISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QE 185 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D ++ I + + + E + L K Sbjct: 186 RIFDRFYQADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESESNEGSCFIVKLPK 241 >gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] Length = 997 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 55/229 (24%), Gaps = 18/229 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + L + + H+I +P+ AI +L + +E + I + + Sbjct: 626 AKEKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSSILADAEEPEEKEEYINIIENNNT 683 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +D ++E+ D V Sbjct: 684 LLLQLVGDILDLSKIESGTLEFVYSDIDLNALFQELEESARLRQKNDAVVIRYLPEMPDC 743 Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ N+ A P G + + F + G +K T Sbjct: 744 FVNIEKNRLTQVVTNMMNNAMKFTPSGSITFGYHLKNTDFLYFYITDTGYGIEKDKKDTV 803 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E L Sbjct: 804 FGRFVKLDSFSQGTGLGLSICQSIVENLGGEIGVESEPGKGSTFWFTLP 852 >gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces ambofaciens ATCC 23877] Length = 1368 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 60/239 (25%), Gaps = 31/239 (12%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLS 56 + +L L S I H+ +P+ I +E L G + + + + + Sbjct: 320 EAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPVEELRTQLAGADAHIREELDVV 379 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101 + + D + D+ V I Sbjct: 380 HRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAIDKAGLGFHIDC 439 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 K++LNL A G + ++V + ++ G Sbjct: 440 APLPEPVYTDRGMWEKVILNLLSNALKFT-FDGSIRVTVHAEDTHAVVTVADTGIGVPAA 498 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + I V L + + + + + L Sbjct: 499 E-MPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGGGTRFTVRLP 556 >gi|320161092|ref|YP_004174316.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994945|dbj|BAJ63716.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 651 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 23/233 (9%) Query: 3 KNICFNLSSMDLVALL---CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54 + I ++ ALL S H++ +PI I+ L++L + ++ + +L + Sbjct: 414 EAIRIRTQQLEQRALLGEVTSVFAHEVRNPINNIYTGLQVLSATLPPDDANQEHLTRLQQ 473 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + L + T + Sbjct: 474 DCVRLNNLMESVLNFSRNTQYKFEPVDLKDFLQRILDRWRPRFGKVNIEAQLFVQEGTPK 533 Query: 108 KIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFP 161 R ++ NL A ++ + ++E + ++ +G Sbjct: 534 AYADPRSLEQVFTNLISNAVDAMSKKGGHLTFQVSPKIGSLGRSEVVIAVLDDGPGI-PD 592 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + V + + + + + + V L+ Sbjct: 593 EIRERIFEPFVTTKPNGTGLGLAITKRIVTAHHGSIQVNSFPG-GTVFEVTLQ 644 >gi|312878350|ref|ZP_07738262.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] gi|311794868|gb|EFR11285.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] Length = 458 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50 +AK + + + S H++ +P+ I+ + L+D G D+ + Sbjct: 221 LAKTFNEMIERLKISFEKQNQFVSDASHELRTPLSVINGYINLIDRWGKNDKEVLQESIV 280 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQV 102 ++ + L R G ++ L + + I + Sbjct: 281 AIKNEVKYMTELVERLLFLARGDSGVIKLQKEVVNLNQLVEEIVKEGKLVAPNRNWSYNH 340 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + R ++L + + GG + ISV+ ++ +K NG E Sbjct: 341 KGRIDIFADGRLMKQMLRAIIDNSIKFTQEGGTINISVEKHLDKVKIVVKDNGIGIPREE 400 Query: 163 K---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V + + +L E +S LL Sbjct: 401 IGKIFDRFYRVDKVRSKTTGGSGLGLSIVKWIVEAHNGEILVESELGKGTEVSVLLP 457 >gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis TXDOH] Length = 926 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 M K L + + + + H+I +P+ AI +LELL + ++ + Sbjct: 424 MRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSER 483 Query: 53 IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + L D L +I Sbjct: 484 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQL 543 Query: 102 VSW-----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 +S +IL NL A RG Q + + Sbjct: 544 LSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQGDSAIEIWVN 603 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + LA + + + D Sbjct: 604 DTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGT 663 Query: 208 VLSALLE 214 ++ +L Sbjct: 664 TVTVVLP 670 >gi|162456214|ref|YP_001618581.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161166796|emb|CAN98101.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 695 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 63/229 (27%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + ++ S L + L S + HD+ +P+ I ++L+ RL Sbjct: 399 LFRSRLEREQSERLTTIGRLLSGVMHDMRTPLTVISGYVQLMAGAPDAATREDHARLILK 458 Query: 59 SAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + R + + + V +++ G Sbjct: 459 QFDVISAMQREVLEFARGERSILVRKVYLTKFFGDIEKQLEHELAGTGVSLSLELEDRGT 518 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L NL A ++ GG VTI + + G E + Sbjct: 519 ARFDEAKMTRLLHNLVRNAVEAMRPGGGTVTIRAYRDGGDLAICVADTGKGI-PKEIQGR 577 Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V S + V + E+ + D + L Sbjct: 578 LFQSFVTSGKRGGTGLGLAIVKKIVDEHAGTITVASS-DKGAKFTIRLP 625 >gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 1236 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/246 (10%), Positives = 66/246 (26%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +++ + + + H++ +P+ AI E+L E + ++ Sbjct: 679 LKQAKEAAIAASRAKSTFLANMSHELRTPLNAIIGYSEILTEEAEDSGYRHIVPDLERIC 738 Query: 61 II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + ++ G +D + I +IE I+ + + + Sbjct: 739 TAGRNLLTLINDILDISKIEAGRMDLYLEDFSISALIESVISTAQPLVDRNSNTLEVECS 798 Query: 114 ER-----------AKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKING 155 ++ +ILLNL A + + + F + G Sbjct: 799 DQIDILYADITKVRQILLNLLSNAAKFTTAGQIKLKVSPQPAEFPNTAPSLIQFQVSDTG 858 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 PE+ + + + + D Sbjct: 859 IGM-SPEQLDLLFQPFTQGDASTTRRYGGTGLGLTISQRFCQMMGGTITIDSQLDCGSTF 917 Query: 210 SALLEK 215 + +L + Sbjct: 918 TVILPR 923 >gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 834 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 59/241 (24%), Gaps = 32/241 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK S + + + H+I +P+ AI L+ ++ + +++A Sbjct: 210 LAKEQAETASEAK--SFFVANVSHEIRTPMNAILGMCYLMQRTDLDARQTDFLNRINVAA 267 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSW 104 + + G + ++ V++ ++ V Sbjct: 268 KSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKAAEKQLELIFSVSQDV 327 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-------KNENIFSLKINGNL 157 +ILLNL A RG V FS++ G Sbjct: 328 PQRLKGDPDRLGQILLNLVNNAIKFTERGKIVVTVRLYKKEAGDEGPVMLRFSIRDTGVG 387 Query: 158 ARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ + + L ++ + Sbjct: 388 IAPKNLS-RLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGKIWAKSTPGKGSTFVF 446 Query: 212 L 212 Sbjct: 447 T 447 >gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1397 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 64/243 (26%), Gaps = 31/243 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + ++ + + H+I +P+ + ++L + + M+++ L SA Sbjct: 698 LEQARHEAEQANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQTSLSGYQMEMVDLIRESA 757 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSW 104 L+ + ++ + + +E + + + Sbjct: 758 FALLEIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLAARKAVELTLFLDPAI 817 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGN 156 E + + ++L+NL A + F + NG Sbjct: 818 PDEVLGDALRLRQVLVNLANNAIKFSSGLQEPGRVSVRALLVEHDQDTVTVEFEITDNGI 877 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E +++ + L + V + Sbjct: 878 GMN-EEVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGGSIQVRSAPGEGSVFT 936 Query: 211 ALL 213 L Sbjct: 937 VRL 939 >gi|148264784|ref|YP_001231490.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146398284|gb|ABQ26917.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 929 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + F +D + +L I HD + + I ++ + ++ + +S Sbjct: 552 EEELFKARKLDSLGILAGGIAHDFNNLLTGILGNVSMARMIIPPDHDAYLLLDRAQKASE 611 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----R 113 A + + V L G+ I F V+ + Sbjct: 612 RARDLTQQLLTFSKGGAPVKRLTGIEHILVDSATFALRGSNVRCEFAIPADLWPAEIDAG 671 Query: 114 ERAKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++++ NL + A ++P D ++K G E Sbjct: 672 QMSQVINNLVINADQAMPDGGVISIQAENIETFSDGDNPDDGRIIQLTIKDTGIGI-LEE 730 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + + + L Sbjct: 731 HLQRIFDPYFTTKHHGSGLGLATVYSIVKNHNGEIRVVSQTGVGTTFIIRLP 782 >gi|116625338|ref|YP_827494.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228500|gb|ABJ87209.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 489 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 24/217 (11%) Query: 21 RICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM-------- 67 + H++ +P+ +I E L + + +IR ++ + + Sbjct: 256 NVSHELRTPLASIQGYTETLIDGALTDPDHNMRFLGIIRHNAERLARLTEDLLTLSRVEQ 315 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDLSRERAKILLNLF 123 + + + D +++ + V S ++IL NL Sbjct: 316 KRQKFEFDLHSANALIHDAFELVSPIARKNYIELVEERAPEDAVVCCDSEAVSQILSNLL 375 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GK+T+ + F ++ G + ++ + + Sbjct: 376 DNAIKYTPADGKITMGATPVGSMVEFFVRDTGAGIPEEDLP-RLFERFYRVDKARSRELG 434 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + L Sbjct: 435 GTGLGLSIVKHMVAAHSGATRVESVVHQGSTFYFTLP 471 >gi|312144079|ref|YP_003995525.1| integral membrane sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311904730|gb|ADQ15171.1| integral membrane sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 459 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 57/234 (24%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 M + S H++ +PI I ++LL ++ + DE ++ I+ Sbjct: 226 MLDRLERAFKKQK---QFVSDASHELRTPISVIKGYVDLLNRWGKEKPKVRDEAIKAIKK 282 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TG 106 + + ++ + L S + I + ++ Sbjct: 283 ETENMKQLMENLLLLARGDDSELIKNEELFNLNNLIKEIIKEFKLLKDDIEINFQEKAEI 342 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFT 165 +++ + + + + ++ I S++ G + Sbjct: 343 NFWGDKNLFKQLIRIFIDNSIKFTSNSENIKLMIDKTETSNCIISIEDKGQGIAAEDLPH 402 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 403 VFDRFYQADKSRTRKKEGSGLGLAIAKEIVDSYNGEIDVESTEGEGTTFRIYLP 456 >gi|210609627|ref|ZP_03288078.1| hypothetical protein CLONEX_00262 [Clostridium nexile DSM 1787] gi|210152817|gb|EEA83823.1| hypothetical protein CLONEX_00262 [Clostridium nexile DSM 1787] Length = 514 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + +L +E +++ QL Sbjct: 273 REEAVTKAKNEQLRANLLRSISHDLRTPLTSISGNAAILLNNEEAFDKEKRRQLYTGIYD 332 Query: 59 SAI-------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ + VD +I + Sbjct: 333 DSMWLINLVENLLSVTRLEESSMQLNMQVELVDEVIEEALKHISRKREEHQLVYEPSEEL 392 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 SR ++L+NL A G ++ +S + S+ NG E Sbjct: 393 LLAKMDSRLIVQVLINLVENAIKYTQEGSRIEVSAVQKADMIEISVADNGKGI-KEEAKE 451 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + H + + + S L+ Sbjct: 452 KIFDMFYTAENKPADSRRGLGLGLFLAKSIIHAHGGTIWVADNVPSGTIFSFTLQ 506 >gi|196232629|ref|ZP_03131481.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] gi|196223391|gb|EDY17909.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] Length = 1047 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 28/235 (11%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 M+ V L S + HD+ + + I S+ LL + D V+ I Sbjct: 667 LRAQRMESVGTLASGVAHDLNNILAPIMMSVPLLRQQLPPDTLDAVVSNIETCVERGARI 726 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116 ++ + + +G + + + ++ + + Sbjct: 727 VQQVLAFGRGLEGERLPLKIGAVIDEMMAIMRETFPKDITLECLPVAKMPPVVGDATQLH 786 Query: 117 KILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLARFP 161 ++LLNL + A ++P GGK + + + +G+ P Sbjct: 787 QVLLNLCVNARDAMPGGGKLRLSATHLEVDASYASMLPEAKPGPYVLLEVADSGSGI-PP 845 Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + + + L Sbjct: 846 EVVERIFEPFFTTKETGKGTGLGLSTVHGIVRSHGGFIKVATEPGKGTTFQVYLP 900 >gi|15891164|ref|NP_356836.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15159515|gb|AAK89621.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 900 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 58/232 (25%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------LIRLS 56 + L L + I HD+ +P+ AI S L + + ++ S Sbjct: 658 RARLAAETDRLRTALLTSISHDLKTPLAAILGSAGTLKDFADDIPPDARAELLSTIVEES 717 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------GE 107 + + +G+++ GL + ++ ++ ++ V Sbjct: 718 ERLNRFISNLLDMTRIGSGAMEPNYGLHFLGDMVGTALSRAAKIVVRHEVVLDIPSDLPM 777 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL A P + I S+ G + Sbjct: 778 LKVDPVLFEQVLFNLIDNAAKYAPEHTTIAIRGWRQGKNIFLSVADEGPGIPPDDLERVF 837 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLE 214 +D + + E D + L Sbjct: 838 DSFYRVRKVDHVQAGTGLGLSICKGFIEAMGGSIRAENRADRGGAQFTIGLP 889 >gi|332701608|ref|ZP_08421696.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551757|gb|EGJ48801.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 828 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 60/232 (25%), Gaps = 22/232 (9%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 K + + L + L + + H+I +P+G I +LL + + +++ Sbjct: 580 EKRVLARMQQGEKLATVGKLAAGLAHEINNPLGVILCYAQLLRDSLAGVQEKEDVEVIIR 639 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 R + L F R +D +V + + + + Sbjct: 640 HTRQARNVLQDLLNFARPKKDGPEVLDVRRVAEAAAKVFQVHAENKRIRLTVESSGEPLR 699 Query: 112 SRERAKILLNLFMVAHASLPRGGKV-------TISVQDSKNENIFSLKINGNLARFPEKF 164 ++L + + + E + + NG E Sbjct: 700 MYAPQQVLEQILTNLLNNALDAVTPGEGEVVIRTFREAEHKEIVLQVIDNGPGV-PEEHM 758 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + V L + R+ V + Sbjct: 759 AHLFDPFFTTKEVGQGTGLGLAVVYGLVRDLGGRIEVGSA--SGAVFTLFFP 808 >gi|319938401|ref|ZP_08012796.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1] gi|319806489|gb|EFW03153.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1] Length = 562 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 67/231 (29%), Gaps = 20/231 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57 +I + + + S + H++ +P+ +I +LL DE + ++ + Sbjct: 325 DITVAKKAEKMRSEFFSNVSHELKTPMTSIRGYSDLLVQGLVHDETQKHMMLEKIQEEVN 384 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI------EDFIAVDKRVQVSWTGEKIDL 111 + + + L+ ++ + ++ ++ + + + Sbjct: 385 SMSTLINDILMLSRIENMDIEVEMMPMKMKGLVDEVLESYQVELSKHDITMHTDFTDLTY 444 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 +I L A G V ++V+D ++K G + F Sbjct: 445 IGNHQQIYTLLNNLIGNAIKYNIDHGHVFVNVEDQGQAMKVTVKDTGIGIPLADQSRIFE 504 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + K + + +L Sbjct: 505 RFYRVDKGRSKQRGGTGLGLAIVKHIVSHYKGVIHLTSELGQGTTIEIILP 555 >gi|317478901|ref|ZP_07938049.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904935|gb|EFV26741.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 294 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 + + S L + + H+I +P+ AI +L + ++ I Sbjct: 52 LQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAEMDDLDRETRMAFLKEIND 111 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSW---- 104 + S + + + + L D E+ + +QV + Sbjct: 112 NKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEFVERL 171 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + A+++ NL A G + S + F + G + Sbjct: 172 PQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGIDEVGR 231 Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + E L Sbjct: 232 HAIFERFVKMNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283 >gi|258591201|emb|CBE67498.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 942 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVM----QLIR 54 ++ ++ + LL I HD + + I EL L E + +L R Sbjct: 559 EDQLHQAQKLEAIGLLAGGIAHDFNNLLNGIIGFAELALRELSEGSKGALYLSRVPRLGR 618 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 ++ L F R A +D L + ++++ +QV E + + + Sbjct: 619 QAAGLIGQLLTFARKAPLERKPLDLNPLLKESGKLLQRTFPETITIQVEPAFEPLIANAD 678 Query: 115 ---RAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 +I+LNL A ++P GG + + ++ G Sbjct: 679 LGNVQQIILNLATNARDAMPHGGTLTLRLAPVILTEASLGDRLHRRPGAFACLTVADTGT 738 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + H+++ L E + L Sbjct: 739 GIPAA-IRDRIFEPFFTTKGPGHGTGLGLASVYGIVHQHEGWLEVETAEGQGSAFYVFLP 797 >gi|160889895|ref|ZP_02070898.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492] gi|270294144|ref|ZP_06200346.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156860887|gb|EDO54318.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492] gi|270275611|gb|EFA21471.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 294 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 + + S L + + H+I +P+ AI +L + ++ I Sbjct: 52 LQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAEMDNLDRETRMAFLKEIND 111 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSW---- 104 + S + + + + L D E+ + +QV + Sbjct: 112 NKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEFVERL 171 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + A+++ NL A G + S + F + G + Sbjct: 172 PQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGIDEVGR 231 Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + E L Sbjct: 232 HAIFERFVKMNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283 >gi|158523274|ref|YP_001531144.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512100|gb|ABW69067.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1134 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 68/240 (28%), Gaps = 31/240 (12%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRL 55 + + + A+ L + HD + + I EL + +E++ R Sbjct: 755 AQLIQARKMEAVGRLAGGVAHDFNNMLNVIVGHAELALDETRPDDPVCETLNEILGAARR 814 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S+ L F R + +D +GD +V++ + D + + + + + Sbjct: 815 SAEITRQLLAFARKQTIHPRVLDLNATMGDRLKVLQRLLGEDVDMAWTPGPDLWPVRMDP 874 Query: 116 ---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNL 157 +++ NL A ++ V S++ G Sbjct: 875 SQIDQVMANLLDNARDAIDGVGRVEIETDNVRLGPWDCVDCPGLVPGEYVRLSVRDTGRG 934 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + V + +N + + L + Sbjct: 935 MDRKTL-DNLFEPFFTTKGVGEGTGLGLATVYGIIKQNNGFIYAASRPGQGTAFTVYLPR 993 >gi|121998928|ref|YP_001003715.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121590333|gb|ABM62913.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 680 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 51/212 (24%), Gaps = 23/212 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------------ 69 + HD+ +P+ A+ +LL E + E Q RL + Sbjct: 314 VSHDLRTPLNALMGFSQLLAETDLTPEERQRYAEHCRRGGERLHGLIDSLLELSRLQSGG 373 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLFM 124 +T + + + + ++ + L NL Sbjct: 374 MRAHTEPLALPALIEEQCALFRPAAERKGIELACQISADLPRWIQGDRTRLEQALSNLID 433 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----HD 180 A G V I+ + +++ G E +I H Sbjct: 434 NAIKYTEA-GHVRITASAEGEQITLAVEDTGPGI-PAENRDRIFAAFDRGNYQGEQQGHG 491 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + +A L + + Sbjct: 492 LGLAIAREIAQLMGGNLHLDSEQGRGTTFTLT 523 >gi|315171704|gb|EFU15721.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX1342] Length = 463 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 70/229 (30%), Gaps = 20/229 (8%) Query: 6 CFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 + L L + I H++ +P+ + ++E + + + + +Q Sbjct: 234 DLSSQLEKQAGLRKRLTTDISHELRTPLATLKGNIEAMIDGVWELTPDRLQSCYDEVDRL 293 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-------- 112 ++ + L + D+L + + + + ++ +++ Sbjct: 294 TRLIRNIELVNKIETNYDNLEKTNFDLYQLCESVIDNFASKIEEKHLTVNVHGEKVNLFA 353 Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQI 167 + ++L NL A + GK+ +V+ K + ++ NG F + Sbjct: 354 DKDKINQVLTNLLSNAVKFTQKEGKIIFTVKKEKENALLIIEDNGIGIEIDQLVHIFDRF 413 Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + + + + + Sbjct: 414 YMADPSRSRNLGGQGIGLAIVKSVVEAHNGTIEAKSNLGLGTTFTISIP 462 >gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 586 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 63/232 (27%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 L S L + + H++ +P+ + E L + + + + +I ++ Sbjct: 345 TREKKLES--LRREFVANVSHELRTPLTYLQGYTEALIDGMVKQPEEKKKYLNIILEETL 402 Query: 59 SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + L + + + + V+ ++ Sbjct: 403 RLRRLVNDLLDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKKRVNITAELKELPL 462 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 ++L+NL A GG++ I +K G E + Sbjct: 463 IYADEDRMEQVLINLIDNALRYTENGGEIIIEASAGTESVTVCVKDRGPGIPEDELPFIW 522 Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + ++ + + D V + Sbjct: 523 ERFYKVDKARTRDNGGTGIGLAIVKNIIEAHGGKVWAKNLRDSGAVFCFNIP 574 >gi|260584709|ref|ZP_05852455.1| sensor histidine kinase [Granulicatella elegans ATCC 700633] gi|260157732|gb|EEW92802.1| sensor histidine kinase [Granulicatella elegans ATCC 700633] Length = 354 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 72/234 (30%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A+N+ + + + H++ +PI A+ +LL + +++ + + Sbjct: 115 LAQNVNQMAEDLKKSSQHRADFIANFSHELKTPIAALVGVSDLLADEKLDEATRRDLTHI 174 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTG 106 S +RL + ++ ++ +K + ++++ Sbjct: 175 LQSESMRLSRLCDDIVTLTKMEKDFLPQKTRVQLDEQIRHAVILMTEKWKEKDIHLTFSS 234 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + + + ++ NL A ++ I++ + ++ G Sbjct: 235 KPVYCQTDADLMMQVWTNLIDNAIKYSGDTVELIITILEENEHIKVQIEDKGIGLSPEAQ 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F Q + + + V + H + + E + LL Sbjct: 295 RHIFEQFYQAEHSHVQEGNGLGLAIVQSIVHRLQGEISVESELGKGSIFEILLP 348 >gi|258516234|ref|YP_003192456.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779939|gb|ACV63833.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 546 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 68/225 (30%), Gaps = 14/225 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + I L ++LV + + I H+I +P+ + L+ L + L Sbjct: 314 MEREIA-RLDKLNLVGEMAAGIGHEIRNPLTTVRGFLQFLATKEECAKYKSYYSLMIEEL 372 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKID 110 + + ++ +I +++ + + Sbjct: 373 DRANSIITEYLSLAKDKPLKFNMTNLNSIITTLFPLIQADALKKNSSVNLEMKDVPDLLL 432 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 E +++LNL A ++P G +TI + + ++ G + +I Sbjct: 433 DENEIRQLILNLVRNALEAMPLSGNLTIKTFSDVDNVVLEIQDEGKGIPL-DIMEKIGTP 491 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA-LLE 214 + D + +A + ++ + S L Sbjct: 492 FFTTKDDGTGLGLAVCYSIAARHDAKINVK-TGSSGTTFSVRFLP 535 >gi|256618609|ref|ZP_05475455.1| sensory transduction histidine kinase [Enterococcus faecalis ATCC 4200] gi|256598136|gb|EEU17312.1| sensory transduction histidine kinase [Enterococcus faecalis ATCC 4200] Length = 406 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 70/229 (30%), Gaps = 20/229 (8%) Query: 6 CFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 + L L + I H++ +P+ + ++E + + + + +Q Sbjct: 177 DLSSQLEKQAGLRKRLTTDISHELRTPLATLKGNIEAMIDGVWELTPDRLQSCYDEVDRL 236 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-------- 112 ++ + L + D+L + + + + ++ +++ Sbjct: 237 TRLIRNIELVNKIETNYDNLEKTNFDLYQLCESVIDNFASKIEEKHLTVNVHGEKVNLFA 296 Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQI 167 + ++L NL A + GK+ +V+ K + ++ NG F + Sbjct: 297 DKDKINQVLTNLLSNAVKFTQKEGKIIFTVKKEKENALLIIEDNGIGIEIDQLVHIFDRF 356 Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + + + + + Sbjct: 357 YMADPSRSRNLGGQGIGLAIVKSVVEAHNGTIEAKSNLGLGTTFTISIP 405 >gi|255527743|ref|ZP_05394597.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296187582|ref|ZP_06855976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|255508559|gb|EET84945.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296047539|gb|EFG86979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 591 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK- 65 + + + + H++ +P+ I ++ L ++ + +I ++ Sbjct: 360 EKMRSEFVANVSHELKTPLTTIIGFVDTLKRKPGEDKEKRQRFLGIISEEVERLKRLIED 419 Query: 66 -----FMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRE 114 + + I + + + + + Sbjct: 420 ILLLSHLENQSSSNNLEEVNIYKELDDILYMLTPSANRKNIGINLIIEKNFTLYVKSKDW 479 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN 171 + ++NL A G + +S +N + +K NG + F + + Sbjct: 480 FKQAVMNLIDNAIKYTQPEGHINVSAYIKENNALIIVKDNGVGIPKEDISRVFERFYRVD 539 Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E + + L Sbjct: 540 KSRSRSEGGTGLGLAIVKHIVSELDGSIYLNSELNKGSEFIIQLP 584 >gi|226228668|ref|YP_002762774.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091859|dbj|BAH40304.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 741 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQ 51 A+ + S L A+ L I HD + + + N E++ DE++ Sbjct: 349 AQLESQLMQSQKLEAVGRLAGGIAHDFNNMLTVVRNYAEMVRSELEPESPMSKDMDEILH 408 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L F R +D + + ++++ + ++ + Sbjct: 409 ATSHAAQLIRQLLAFSRQQILQPVRLDLNDVIRNAHRMLQRVLPSHVEFRLDLGHPISTV 468 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----------------NENIFSLK 152 + +I L A ++P+GG++T S+ ++ Sbjct: 469 LADPGQIEQVLMNLTVNASDAMPQGGRLTFRTTMSELDDTTEPAAAGVVGARRYVCLTVV 528 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G +I + + + V + + + Sbjct: 529 DTGIGM-DHATTARIFEPFFTTKPVGKGTGLGLAGVHGIIAQLGGSIWVYSQPGRGTTFK 587 Query: 211 ALLE 214 L Sbjct: 588 VYLP 591 >gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B] gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B] Length = 465 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 63/233 (27%), Gaps = 22/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAII 62 + + + I H++ +P+ AI E LL+ + + + + Sbjct: 230 ELEKLKQLDKMKTEFVANISHELRTPLTAIKAYTETLLNMEVDRESQREFLETVYEQSER 289 Query: 63 RLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + S L L +A +V+++ + E I +S Sbjct: 290 LESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKVKINVSCESISIS 349 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPE---K 163 ++ +I + + + + + ++ NG + Sbjct: 350 ADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEENLSIIIEDNGIGISQEDKEKI 409 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + + V + + ++ ++ Sbjct: 410 FEKFYRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGTTFELVIP 462 >gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 64/254 (25%), Gaps = 42/254 (16%) Query: 2 AKNICFNLSSMDL-----VALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDE 48 K N S +L A SR + H+I +PI + L+L+ + + DE Sbjct: 166 RKERELNESREELCWAKEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQLVLDTELGDE 225 Query: 49 VMQLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV- 96 + ++ SA R + D + +++ Sbjct: 226 QRHCLEMAKRSADALLRLVNDILDFSRIEARKMVFESRPFDLTACVNSAVEILAFEARRK 285 Query: 97 ----DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNE 146 R+ + ++L+NL A RG + + Sbjct: 286 GLAVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDRGKVEVTAARAERQSDPLRTA 345 Query: 147 NIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPE 200 S++ G E+ ++ + + + E Sbjct: 346 IRISVRDTGIGIAPQER-ERLFRVFSQVDGACNRRFGGTGLGLALTRDIVEAMGGAIDVE 404 Query: 201 IIDDHNVVLSALLE 214 + + Sbjct: 405 SQSGQGSTFTITIP 418 >gi|27381827|ref|NP_773356.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27354996|dbj|BAC51981.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 625 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 A+ M+ V L I H+ + + I ++E+L + ++ + + Sbjct: 207 AEEQLIQAQKMEAVGQLTGGIAHEFNNMLTVITGTIEILADAVKDNPPLATITKLISEAA 266 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + L F R +D L ++ +++ + + Sbjct: 267 DRGAALTSSLLSFARKQALQPTEIDVNELLEELAKLLLATFDKKIEIVTKLDSKVWLAFV 326 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQ---------------DSKNENIFSLKING 155 +R ++ L A ++ GG++T++ + + + + G Sbjct: 327 DRGQLSSALLNLAINARDAMLDGGRLTLTTRNVVFGVREAVAVGAGYAGDYVEIEIADTG 386 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + V ++ + + + L Sbjct: 387 TGI-RRAILERIFDPFFSTKEVGKGTGLGLSMVFGFVKQSGGGIKVASEEGRGTTFTIYL 445 Query: 214 EK 215 K Sbjct: 446 PK 447 >gi|313889990|ref|ZP_07823627.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121648|gb|EFR44750.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 444 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRL 69 L S H++ +P+ +I E + + + + + + ++ + Sbjct: 215 EKLNMDFVSNASHELRTPVTSIRGFAETIKQMSEDDIELKEEFLDIIYKESLRLEHIVEH 274 Query: 70 A------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 D L +G+ + D +++ ++ Sbjct: 275 MLALSKVKNTQLQKTQFSINDFLHDIGNSMKHQLDQKKQSLAFELTQDFAVETDKYLLSQ 334 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +LLNL A GGK+T+S + + S+ G R E +I + Sbjct: 335 VLLNLLSNAIRYTDEGGKITLSTVFDEQKLKISVSDTGIGIRQMEL-ERIFERFYRVNKG 393 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + L Sbjct: 394 RSRQSGGTGLGLSIVKELIQLLGGTVTVRSQLGEGSQFTISLP 436 >gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 587 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 +A++ + + + H++ +P+ AI E+L + + +L Sbjct: 318 LARSAAERADAAK--TRFLATMSHELRTPLNAIIGFSEMLMQEQALVLNAARRREYAQLI 375 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101 + S L + + L + + Sbjct: 376 NDSGQHLLSVVNGILDMSKMESGNFELTPEPFAPRAALINCCNLLALRARENGVDLSADV 435 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 R +I++NL A RGG+V +S + + + G Sbjct: 436 PHDLPTITGDPRAFKQIVINLVSNAIKFTERGGRVMVSAAIEGPQLLLRITDTGVGIAAD 495 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + V L + + + E D +S L Sbjct: 496 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVNLHGGEMSIESKLDEGTTVSIALP 553 >gi|82702418|ref|YP_411984.1| multi-sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410483|gb|ABB74592.1| multi-sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 662 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM-- 50 + ++ + A + + HD+ +P+ AI + L D+ G E + Sbjct: 423 LMADLESANEELKSFAYV---VSHDLKAPLRAIGALADWLSTDYLDKFDDEGREHMRLLV 479 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKI 109 + L++ R+ V+ + + + + + + V T + Sbjct: 480 SRVHRMGNLIDGILQYSRVGRVREAPVEVKVDEVLRDVIDFIAPSPNVTITVENTLPSIV 539 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV 168 +I NL A + + FS+ NG F +I Sbjct: 540 IEPTRIQQIFQNLLSNAIKYMDKPQCEIRIGCIAEGEHWRFSISDNGPGIESRH-FEKIF 598 Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++S + V + + E L K Sbjct: 599 QLFQTLAPRDRVESTGVGLTLVKKIVEMYGGSIWVESTPGEGTTFFFTLPK 649 >gi|78358637|ref|YP_390086.1| periplasmic sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221042|gb|ABB40391.1| periplasmic sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 479 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFN--LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIR 54 + K S L ++ + + I H+I +P+G I +S ELL + + + ++++ Sbjct: 244 LEKERLERDLHQSEKLASMGRMVASIAHEIRNPLGIISSSAELLLRRTGDADPLTGRILQ 303 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + + Y DI V+ + +E Sbjct: 304 AIFDEAKRLGQTVNDFLDYARPRRPGRDPVDIAAVLRQATGFMEGEFARSQVALHADLQE 363 Query: 115 R----------AKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159 + NL + ++ G + + + NG Sbjct: 364 GLLVAGDKDLLYRAFYNLMANSLQAMQGGTVQDATLTLCTRMTRDGQVEVRIADNGPG-F 422 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +++D + + + V + ++ + + + L Sbjct: 423 PRQGREKLLDPFYTTRDEGTGLGLAIVNNIITSHEGSMELTDAPEGGAEVRVTLP 477 >gi|302338876|ref|YP_003804082.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636061|gb|ADK81488.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 391 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 14/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIR 54 + L S L L S I HDI +PI + +LL + ++ IR Sbjct: 161 LQTAQSELLKSERLSTLGKFSSMILHDIRNPISVVKAYTDLLLISEGIPQKNMDYIRNIR 220 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTG 106 + + +D L + + + ++ G Sbjct: 221 FEAERLNQLANELLDYSRGEIRLDMGSVDLDGFFLRLEEWVRRRFASRRCEITLRNGHQG 280 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 I + L NL A ++ GG +++ +D+ +F++ G Sbjct: 281 PVIFDQERMFRALTNLSDNARKAMTMGGSFSLTAEDNDGWLLFTVSDTGEGMNKEVLERV 340 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + V + + + + + Sbjct: 341 FEPFYSSSKGGGTGLGMAIVKSTVEAHGGNIEIDSAPGKGTRIFLRIP 388 >gi|229128913|ref|ZP_04257889.1| hypothetical protein bcere0015_33580 [Bacillus cereus BDRD-Cer4] gi|228654618|gb|EEL10480.1| hypothetical protein bcere0015_33580 [Bacillus cereus BDRD-Cer4] Length = 490 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 255 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 314 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 315 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 374 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 375 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 433 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 434 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 480 >gi|114561405|ref|YP_748918.1| osmolarity sensor protein [Shewanella frigidimarina NCIMB 400] gi|114332698|gb|ABI70080.1| periplasmic sensor signal transduction histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 446 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 10/219 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 MA ++ ALL + I HD+ +P+ I + E++ D+ +++ ++ I Sbjct: 225 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEDDQYLKEGIVTDIEDMDA 281 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + ++R D + L E + ++ + S ++ Sbjct: 282 IINQFIAYIRNDREGVREPDQINRLIQEISQQESHREETIELSLADCPDVPMNSVAIKRV 341 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175 L NL A G + IS N FS++ NG E F G+ Sbjct: 342 LSNLVENAFRY--GNGWIKISSYHQGNAVCFSVEDNGPGINEAEVEHLFQPFTQGDTARG 399 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + L Sbjct: 400 SIGSGLGLAIIKRIIDRHHGKVKLSNRPQGGLKAQVWLP 438 >gi|256004534|ref|ZP_05429513.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|255991539|gb|EEU01642.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|316940005|gb|ADU74039.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 504 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 N+ L +++ + + + H++ +P+ +IH +E + + E + + ++R Sbjct: 265 NMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPPEKEKDYLLIVRDEIR 324 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + +E I + Sbjct: 325 RLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCIIKLENFITQKDIEVEANFEEEDM 384 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++L+NL A + + GK+ +S KN+ + ++ NG E Sbjct: 385 YVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTSSYKNKVLVCVEDNGIGIDRNEIDLI 444 Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + +++K + E L+K Sbjct: 445 WERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIWVESEVGKGTKFYFTLDK 498 >gi|239834065|ref|ZP_04682393.1| osmosensitive K+ channel signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] gi|239822128|gb|EEQ93697.1| osmosensitive K+ channel signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] Length = 901 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 54/233 (23%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------L 55 + + L + L + I HD+ +P+ AI + L + Sbjct: 659 ERAKLAAEADKLRSALLTSISHDLKTPLAAILGAATTLRDYSASLPDADRSELVATVVDQ 718 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------G 106 S + + G++ + L + +I + R+ Sbjct: 719 SERLNRFIANLLDMTRIEAGAMKPNLSLHFVGDLIGAALNRASRILACHQVNVAVPVNLP 778 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + L NLF A P +T+ + + G + Sbjct: 779 MVHLDAVLFEQALFNLFDNAAKYAPENSPITVKAHADTSNITLEISDRGPGIPHDDLEHV 838 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 D + + + V + L Sbjct: 839 FDTFYRVRKGDHVQAGTGLGLPIARGFIEAMGGSIRAGNQQEGTGAVFTVTLP 891 >gi|308535234|ref|YP_002138198.2| CHASE/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|308052579|gb|ACH38402.2| sensor histidine kinase response regulator, CHASE and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 848 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + M+ V L + HD + + I + EL L+E D +++I ++ Sbjct: 469 EEQYRQSQKMESVGRLAGGVAHDFNNMLSVILGAAELSRRKLEEGEPIDAYLEVITNAAK 528 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R +D + + +++ I+ D + + +S + Sbjct: 529 RSSEITRQLLAFSRKEVVSPRPLDLNQLIRESNKILARLISEDINLSFTPDPGLWLVSID 588 Query: 115 RAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156 +++ L A ++P + ++ G Sbjct: 589 PSQVDQILMNLAVNARDAMPNGGRLSIETRNLRLTGDCSHVHPDAHPGDYVQLTVSDTGQ 648 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + +N+ + V L Sbjct: 649 GMDKATV-EHIFEPFFTTKELGKGTGLGLATVYGIVTQNRGFINVYSEPGQGTVFRINLP 707 Query: 215 K 215 + Sbjct: 708 R 708 >gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 992 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 56/239 (23%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + A L + H+I +P+ + LL + ++ E SA Sbjct: 347 AQQVAERANQAK-AAFLA-TMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAE 404 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDFIAVDKRVQVSWT 105 L + ++ + L + I + V Sbjct: 405 SLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLP 464 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161 +IL+NL A + D F ++ G Sbjct: 465 AWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDETSPDGAGRLRFDVRDTGIGI-PQ 523 Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ ++ + L + E + L Sbjct: 524 DAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLP 582 >gi|125973802|ref|YP_001037712.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|281417958|ref|ZP_06248978.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|125714027|gb|ABN52519.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|281409360|gb|EFB39618.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] Length = 504 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 22/234 (9%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 N+ L +++ + + + H++ +P+ +IH +E + + E + + ++R Sbjct: 265 NMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPPEKEKDYLLIVRDEIR 324 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + +E I + Sbjct: 325 RLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCIIKLENFITQKDIEVEANFEEEDM 384 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 ++L+NL A + + GK+ +S KN+ + ++ NG E Sbjct: 385 YVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTSSYKNKVLVCVEDNGIGIDRNEIDLI 444 Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + +++K + E L+K Sbjct: 445 WERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIWVESEVGKGTKFYFTLDK 498 >gi|320451054|ref|YP_004203150.1| signAl transduction histidine kinase containing a receiver domain [Thermus scotoductus SA-01] gi|320151223|gb|ADW22601.1| signAl transduction histidine kinase containing a receiver domain [Thermus scotoductus SA-01] Length = 723 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + L S + + L + H+I +P+ ++ +LEL E E++ + S Sbjct: 76 LRERELALLKSQEETSRLLGLLLHEIKNPLMSVLGALELTLEVEGLPEEAKELLSIAEKS 135 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + L R V L E++ +++ + Sbjct: 136 ARRIQDLLNKAREYLRLGQGVRLKSERVDLKALLLQVAEEMRPLARRKGIALRLILPKRE 195 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +R + +LN+ A P GG+V + + + ++ G E+ Sbjct: 196 AWVYGDREWLYQAVLNVVNNAIKYTPEGGRVAVRLLVGPEQYGIAVSDTGPGI-PKEEQE 254 Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + ++ + V + + + LL + Sbjct: 255 RVFEPFYRASTRGEVEGTGLGLALVKRVLEAHGGEVRLRSRLGQGSTFLLLLPR 308 >gi|317151792|ref|YP_004119840.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942043|gb|ADU61094.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 584 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDEV------------- 43 + L M+ + ++ L + + H+I +P+ I+ L+ ++ Sbjct: 336 QTRANALHQMEHTNRMASIGRLAAGVAHEINNPLAIINEKAGLIKDLFSFKEQYAHDRRL 395 Query: 44 -GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQ 101 D ++ + L F R + ++ + ++ + + Sbjct: 396 LANIDSILASVERCGRITKRLLSFARHIDVNVEVLRFKDVAEEVLSFLHKEAEYRNIAIV 455 Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNL 157 +S + +R +I LNL A ++ GG+ + + + F+++ NG Sbjct: 456 MSIPENMPEFVSDRGKLQQIFLNLVNNAFQAMNDGGRLSISAARGEGDTLDFTVRDNGCG 515 Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ +I + + + L E + E + L Sbjct: 516 IPEADRK-RIFEPFFSTKKKTGGTGLGLSITYGLVQELGGSMAVESEVGKGTAFTITLP 573 >gi|260913806|ref|ZP_05920281.1| aerobic respiration control sensor protein ArcB [Pasteurella dagmatis ATCC 43325] gi|260632119|gb|EEX50295.1| aerobic respiration control sensor protein ArcB [Pasteurella dagmatis ATCC 43325] Length = 617 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 65/237 (27%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + L +++ + L + I H++ +P+ I +L + + D+ ++ Sbjct: 105 EKKLSIALDNIEKTSRDKTQLMATISHELRTPLNGIIGLSRILLDSELTDKQRDYLKTIH 164 Query: 58 MSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---- 102 +SAI V+ L DI A K Sbjct: 165 ISAISLGHIFSDIIDLEKIDARRIELSPKEVELQHLLADISNFGTLMAADKKLCFQLIES 224 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++IL NL A +G V ++V ++N F + G Sbjct: 225 SPLPQWLMLDYARVSQILWNLIGNAVKFTSKGS-VQLNVSTNENNIYFIVSDTGVGIPQE 283 Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + I +A L E + L Sbjct: 284 ELHRVFEMYYQVKSSGQKPLGSGIGLAVSKTIAQLMGGDLTVESELGKGASFTLTLP 340 >gi|218134830|ref|ZP_03463634.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC 43243] gi|217990215|gb|EEC56226.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC 43243] Length = 473 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 58/216 (26%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YT 74 S I HD SP+ +I LE + + + + + ++ + + Sbjct: 250 SNISHDFRSPLTSIKGYLEAMSDGTIPPELHQKYIGIVLFETERLTKLTNNLLTLNDLDP 309 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLF 123 SV DI VI I + V + +++ NL Sbjct: 310 KSVRLNYSDFDINDVIRHTIETFEGVCTEKKITFKLTFSSRQLMVHADMEKIQQVVYNLV 369 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID--S 178 A + IS S+K NG + + + + D Sbjct: 370 DNAVKFSHPDSFIAISTTTKNGRAFISVKDNGIGIPKDDLKKIWERFYKTDNSRGRDKKG 429 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ + L+ Sbjct: 430 SGLGLAIVREIIQTHGERIDVISTEGVGTEFVFSLK 465 >gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1240 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 23/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77 +R+ H+I +P+ + ELL + + + + S L + ++ Sbjct: 568 ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627 Query: 78 ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123 + L D+ ++E + S +IL NL Sbjct: 628 KLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 687 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A G + +F + +G P+ Q+ + Sbjct: 688 GNAIKFTEHGHVALSAEYSDDGRIVFKIADSGIGI-APDVAAQLFRPFQQADSSTARKYG 746 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L + V + Sbjct: 747 GTGLGLAISRQLAEMMGGTLALDSTPGKGSVFTVTTP 783 >gi|150006769|ref|YP_001301512.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149935193|gb|ABR41890.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 622 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + + + H+I +P+ AI +LL +++ + + LI++++ Sbjct: 388 AKEKAEEADMLK--STFLANMTHEIRTPLNAIVGFSDLLGVEEDLELRQNYISLIKMNND 445 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108 + + + V + D+ I+ + + Sbjct: 446 LLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLDACPDIIF 505 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167 +I +NL A +G +D F + G E Sbjct: 506 NIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCGIPKDELDNIF 565 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L + + + L Sbjct: 566 ARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 613 >gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 908 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53 MA+ + +L L + + H+I +P+ AI EL+ ++ ++E M +I Sbjct: 532 MAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPAEKEEYMSII 591 Query: 54 RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + ++ + + + L + Q V+ ++ Sbjct: 592 QSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCGELYTMIQPKITNPDVEFQMAN 651 Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 S I ++ +N A G + ++ +G Sbjct: 652 SGPDCWIFLDRNRLKQVWMNYLTNAIKCTKSGHIKMGYGIERGG-IRIYVEDSGVGIPI- 709 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + D A + Sbjct: 710 ELQERVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEVGFTSTPDVGSTFWAWIP 764 >gi|239907078|ref|YP_002953819.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796944|dbj|BAH75933.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 666 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 20/241 (8%), Positives = 58/241 (24%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------------- 42 + + + + + L + + I H++ P+ AI + L Sbjct: 417 LVEKDAQLIQASKMKTLGEMSAGIAHELNQPLNAIKMGSDYLKMVAETGGLPSPVALAAV 476 Query: 43 VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 G E + + Y + + G+ I ++ +++ Sbjct: 477 TGQVSEQVDRAAAIIGHLRDFGRKSEPKLEYVDINEPIKGVFTIIGHELALQGIEVVLRL 536 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKING 155 + + ++ NL + A ++ + S+ G Sbjct: 537 AAVAPIKAHANRLEQVFFNLVVNARDAMTGISCPAERPRRLTIVSESRDGLVDVSVADTG 596 Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + + + + + + E + V Sbjct: 597 CGI-PEAARRKIFEPFFTTKQTGQGMGLGLAITYGIVRDYGGEIEVESAPEKGSVFRLTF 655 Query: 214 E 214 Sbjct: 656 P 656 >gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] Length = 821 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 62/236 (26%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + L + L + + + H++ +P+ ++ +L + ++ + + Sbjct: 309 LEQANQELLEADRLRSEFVANMSHELRTPLNSVIGFSSVLMKNRNQSLLEKDLNFVEKIH 368 Query: 58 MSAIIR------LKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWT 105 + + + V+ L + A + ++V Sbjct: 369 RNGKHLLSLINDILDLSKIEAGRMEVELRPVLVQDVVRDTSEMLQTQAEAKNVALRVEGQ 428 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163 + + + K+ L + +L + VT+ V + G + Sbjct: 429 LDLPYIQTDGDKLRQVLINLVGNALKFTERGSVTLKVGVESQWLRIDVIDTGIGIAEDKL 488 Query: 164 F-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + R+ + + S L Sbjct: 489 MTVFEPFRQADAGTTRQYGGTGLGLAITRSIVEMLDGRVELDSVQGQGSTFSVYLP 544 >gi|220918949|ref|YP_002494253.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956803|gb|ACL67187.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 592 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/248 (10%), Positives = 60/248 (24%), Gaps = 35/248 (14%) Query: 1 MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELLDE-------V 43 +A L + L A+ S H++ +P+ A+ +LE + Sbjct: 328 LAHRAAQALENARLYGEAQAAVAARDEFLSIASHELRTPLTALRLALENMRRVASREALE 387 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + ++ + ++ RL+ + A + +IE V + QV Sbjct: 388 SLPAAYVERVLATAERQGQRLEKLVAALLDVSRIHMGRLELEIEDVDLGHAVSEAVAQVE 447 Query: 104 WTGEK--------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 + +++ NL A Sbjct: 448 DEAAQAGSQVTVQGEPVRGRWDRLRISQVATNLLSNAVKYGAGKPVEVSFGTRDGR-AYL 506 Query: 150 SLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 ++ G + F + + Y V + + + E Sbjct: 507 RVRDQGIGIDPADQRQIFERFERAVSSRNYGGLGLGLYIVKRIVEAHGGAVRVESAPGEG 566 Query: 207 VVLSALLE 214 L Sbjct: 567 AAFEVTLP 574 >gi|116617704|ref|YP_818075.1| Signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096551|gb|ABJ61702.1| Signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 326 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 M ++ L + A + H+ +P+ AI +E L + + +Q++ Sbjct: 95 MLYDLTEVLKLERMQADFLANASHEFKTPLTAITGFVETLQGDAGADEETRTQFLQIVAD 154 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + VD I + + + D + ++ Sbjct: 155 EAKRLSALVNDILSLSRMQHKVDEKISNLEISAIVEQQLEKIDTKTITVHNDIAPDFSVS 214 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++ + + I+ NL + G+V IS + + +G + F + Sbjct: 215 GIASDVSTIVQNLLTNSVKYNKIDGEVWISAYKDTQQWQIKVSDSGIGIPLNQQSRIFER 274 Query: 167 IVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + V + +++ + + +S +L Sbjct: 275 FYRGDESRQRKIASGTGLGLAIVNEIVNQHNGEINIKSQVGVGTTISVILP 325 >gi|70726426|ref|YP_253340.1| respiratory response protein SrrB [Staphylococcus haemolyticus JCSC1435] gi|68447150|dbj|BAE04734.1| staphylococcal respiratory response protein SrrB [Staphylococcus haemolyticus JCSC1435] Length = 585 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 18/218 (8%), Positives = 54/218 (24%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + H++ +PI + E + + + + ++ + + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPEEIRDSLSIVLDETKRLNRLVNELLNVARMD 424 Query: 75 GS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDLSRERAKILLNL 122 V+ + + + ++L NL Sbjct: 425 AEGLTVNKEKQPIKPLLSKMQMKYRQQAEDLELNMSLEPNIDDELWEYDADRIDQVLTNL 484 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177 A G ++I+ + +K G+ F + + Sbjct: 485 IDNATRYTQPGDSISITTTTDDSYQTLHIKDTGSGISPEHLELVFDRFYKVEASRTRGKQ 544 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + E + L K Sbjct: 545 GTGLGLFICKMIIEEHGGTIKVESKVNKGTTFIIKLPK 582 >gi|128598|sp|P19906|NTRB_VIBAL RecName: Full=Nitrogen regulation protein ntrB Length = 350 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIVIERDYDPSLPEILMDA 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I + K + NG Sbjct: 236 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347 >gi|319653495|ref|ZP_08007594.1| hypothetical protein HMPREF1013_04211 [Bacillus sp. 2_A_57_CT2] gi|317394694|gb|EFV75433.1| hypothetical protein HMPREF1013_04211 [Bacillus sp. 2_A_57_CT2] Length = 419 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 74/230 (32%), Gaps = 18/230 (7%) Query: 2 AKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49 +N+ + + L A+ + + I H+I +P+ A ++LL E + Sbjct: 182 KRNLDIRENLVRAEKLEAVEQMGAAISHEIRNPLTAAIGFVQLLQEQRLPPRKRVEYLGI 241 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ + + K L+ + +I + + +V+ + Sbjct: 242 VKAELESAEQVIQNYLTFSKPSLDKIEEINVKKELMQVMNILKPTANQNSVEINAHFALL 301 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 G ++ + LN+ + ++PRGG++ I S ++ +K G + Sbjct: 302 GSIKGDRQKFHQCFLNVIKNSIEAMPRGGQLYIETHYSSSQITIEIKDTGVGMTSDQL-Q 360 Query: 166 QIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + + V Sbjct: 361 RLGEPYYSTKGSKGTGLGMMVVFSIVRAMDGNVRVKSEVGKGTVFRFTFP 410 >gi|317478508|ref|ZP_07937667.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316905322|gb|EFV27117.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1326 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ M L + I HD+ +P+ I + L++L ++D + + + + +A Sbjct: 813 LEQEQKLLLNEMKLK--FFTNISHDLRTPLTLIISPLQMLLSETLDDGIRKKLNTINKNA 870 Query: 61 IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + + V+ + + Q + Sbjct: 871 QQLLTSINSLLDFRKLDVGAETAHYKSGDIVNFIREICSTFQEYALDHTISFCFMCEVEN 930 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + K++ NL A P G++ + + + + NG + Sbjct: 931 LNMSFDPVKIKKVMNNLLSNAFKYTPDKGEINVHLYREDDNVCICVADNGQGIIDKDKKH 990 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + S I + H +K + V + L Sbjct: 991 IFERFYQVQQTSEKTGSGIGLHIANEYVHLHKGTISVTDNFPKGSVFTVKLP 1042 >gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 498 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 65/230 (28%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54 + + + + ++ A + S HD+ +P+ I + +LL+ + + ++I+ Sbjct: 268 EEELARSNAELEQFAYVAS---HDLQAPLSTIASYAQLLEGRYRDKIDANAMKFIQKMIK 324 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEK 108 S + + + S D + + V Sbjct: 325 GSVRMQSLIDDLLEYSRVSKKSKDFEPTDCNQIFEEACGNLHLAIRKNQATVSRCDLPTV 384 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---KF 164 I + ++ NL A + + + + + +FS+ NG F Sbjct: 385 IGDCSQMVQVFQNLIGNAIKYRRDEPPIIHLNAERRETDWLFSVSDNGIGIDSKHSERIF 444 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + ++ E + L Sbjct: 445 QIFQRLHTQEEYTGTGIGLAICQKIVERHGGQIWVESQLGAGAIFYFTLP 494 >gi|270295515|ref|ZP_06201716.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274762|gb|EFA20623.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1336 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ M L + I HD+ +P+ I + L++L ++D + + + + +A Sbjct: 823 LEQEQKLLLNEMKLK--FFTNISHDLRTPLTLIISPLQMLLSETLDDGIRKKLNTINKNA 880 Query: 61 IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + + V+ + + Q + Sbjct: 881 QQLLTSINSLLDFRKLDVGAETAHYKSGDIVNFIREICSTFQEYALDHTISFCFMCEVEN 940 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + K++ NL A P G++ + + + + NG + Sbjct: 941 LNMSFDPVKIKKVMNNLLSNAFKYTPDKGEINVHLYREDDNVCICVADNGQGIIDKDKKH 1000 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + S I + H +K + V + L Sbjct: 1001 IFERFYQVQQTSEKTGSGIGLHIANEYVHLHKGTISVTDNFPKGSVFTVKLP 1052 >gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 1007 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI EL+ E D + + + Sbjct: 630 LQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAGEEEKADYIQIINSNNE 689 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + L+ GSV+ D + + ++ Sbjct: 690 LLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCC 749 Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 A+I+ N A +G F +K G +K Sbjct: 750 QVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGG-VYFYVKDTGIGIADDKKGKV 808 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ E + + + A L Sbjct: 809 FQRFEKLDEFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLP 857 >gi|228939122|ref|ZP_04101717.1| hypothetical protein bthur0008_17830 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971999|ref|ZP_04132617.1| hypothetical protein bthur0003_17770 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978609|ref|ZP_04138982.1| hypothetical protein bthur0002_18130 [Bacillus thuringiensis Bt407] gi|228781105|gb|EEM29310.1| hypothetical protein bthur0002_18130 [Bacillus thuringiensis Bt407] gi|228787713|gb|EEM35674.1| hypothetical protein bthur0003_17770 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820545|gb|EEM66575.1| hypothetical protein bthur0008_17830 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 351 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 70/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + + + V + ++ + E + + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCI 345 >gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho africanus TCF52B] gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho africanus TCF52B] Length = 424 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 60/220 (27%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM------- 67 S + H++ +P+ +IH E L ++ + + + +I + + + Sbjct: 194 SNVSHELRTPLTSIHGYAEALLEDDLEDKELIRKFLSIIESEAARMTRLINDLLDLEKLE 253 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + F + L + +I + + V+ + ++ LNL Sbjct: 254 SGNTQFVFEKINFTEVLEHVRNIIEPLAKDYQVEVEFVYPDELYLVGDKDRLTQMTLNLV 313 Query: 124 MVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR---FPEKFTQIVDGN--VES 174 A K V N +K G + F + + Sbjct: 314 DNAIKYTSLKEKGKKKVTVEAWKENNSIKLVVKDTGVGIPEKAQKKLFERFYRVDKARSR 373 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + L Sbjct: 374 KMGGTGLGLSIVKTIVEKHNGVIEFTSKEGVGTKFVVTLP 413 >gi|160891349|ref|ZP_02072352.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492] gi|156858756|gb|EDO52187.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492] Length = 1336 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ M L + I HD+ +P+ I + L++L ++D + + + + +A Sbjct: 823 LEQEQKLLLNEMKLK--FFTNISHDLRTPLTLIISPLQMLLSETLDDGIRKKLNTINKNA 880 Query: 61 IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + + V+ + + Q + Sbjct: 881 QQLLTSINSLLDFRKLDVGAETAHYKSGDIVNFIREICSTFQEYALDHTISFCFMCEVEN 940 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + K++ NL A P G++ + + + + NG + Sbjct: 941 LNMSFDPVKIKKVMNNLLSNAFKYTPDKGEINVHLYREDDNVCICVADNGQGIIDKDKKH 1000 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + S I + H +K + V + L Sbjct: 1001 IFERFYQVQQTSEKTGSGIGLHIANEYVHLHKGTISVTDNFPKGSVFTVKLP 1052 >gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] Length = 1007 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI EL+ E D + + + Sbjct: 630 LQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAGEEEKADYIQIINSNNE 689 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + L+ GSV+ D + + ++ Sbjct: 690 LLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCC 749 Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 A+I+ N A +G F +K G +K Sbjct: 750 QVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGG-VYFYVKDTGIGIADDKKGKV 808 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ E + + + A L Sbjct: 809 FQRFEKLDEFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLP 857 >gi|118476035|ref|YP_893186.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118415260|gb|ABK83679.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 340 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + K S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 98 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 157 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + I + + Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 217 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 218 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 277 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E I + K Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 334 >gi|261253461|ref|ZP_05946034.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio orientalis CIP 102891] gi|260936852|gb|EEX92841.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio orientalis CIP 102891] Length = 593 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + L++ D+ + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLEKSKYDRVDDNLTR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAVDKRVQVSWTG 106 I + +R + S + I E + F A + + Sbjct: 418 ISALTDRMAKISSQLRSFAKKSDSDEITRADAAPIIFAAKELLAPQFKANQVTLNLDIEP 477 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161 + ++ L + ++ Q + + NG Sbjct: 478 NLPSIEINPIQLEQVLINLLTNAIQAIEDQQSKQIDLSVQYGNGKVEVLVDDNGPGI-PF 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Q+ + + + + + L + Sbjct: 537 DSQAQLFEPFYTTKKNGLGLGLSISHQITQAMGGELSVTTSPLGGARFILAIP 589 >gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 631 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 64/233 (27%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55 + L + + L + + + H+I +P+ AI LL ++ E +I Sbjct: 395 QRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQVEDKEEMKEYADIIET 454 Query: 56 SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + + + + D + +IEQV + I ++ V Sbjct: 455 NTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQVGKLRIKSEELVLTFDEQL 514 Query: 108 KID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++++NL A G F + G E+ Sbjct: 515 PQCILYTDKNRLTQVIINLLTNAIKFTSGGEIRMGYRLKDAATLYFYVSDTGCGM-STEQ 573 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + ++ + + + L Sbjct: 574 CEHVFERFVKYNPFIQGTGLGLSISRMIIEKLGGEIGVTSEVGKGSLFWFTLP 626 >gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 781 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 57/220 (25%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + H+I +P+ AI L+ D E +I +S + + Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTIADNAEDEKLYSDIINQNSEILLQLIND 476 Query: 67 -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + ++ + V + + Sbjct: 477 ILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +++ NL A G++ + + F +K G + + Sbjct: 537 MQVVTNLITNAIKFT-FKGEIRFGFEVREEYIDFYVKDTGMGISEEKIKMIFERFVKLNT 595 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + E + + Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635 >gi|229028449|ref|ZP_04184571.1| hypothetical protein bcere0028_5670 [Bacillus cereus AH1271] gi|228732898|gb|EEL83758.1| hypothetical protein bcere0028_5670 [Bacillus cereus AH1271] Length = 422 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 63/219 (28%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + + + H++ +P+ + ++ L E ++ ++ + + + ++ F Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256 Query: 75 GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 + + + + + ++ + VS++ + ++++ Sbjct: 257 QMEQHNFSIQVKKVHLHTFLTRIAEKVNAMYKERYITVSFSCPPTLVVNLDEQRFEQVII 316 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + +++ G + Sbjct: 317 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 376 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + DH L Sbjct: 377 TGGTGLGLSIVKEIVELHSGNVTVTSEVDHGSCFIISLP 415 >gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 404 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 29/243 (11%) Query: 2 AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQL 52 + L + L + + + H++ +PI AI ++L + L Sbjct: 158 RQRRQIELQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRKYPEPLTCAQTDL 217 Query: 53 IRLSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDK 98 ++ ++ L + ++ + + + + + Sbjct: 218 VQRIFDNSKNLLTLLNDVLHFSKIEAGKLLLHPTELDLKQLTVLTTEELRSLAVSKNLSL 277 Query: 99 RVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +++V +I + +IL+NL A GG + + ++K G Sbjct: 278 QIKVELENPQIVNDQSCLRRILVNLLSNAIKFTESGGVWVNVWEMRPDWLAIAVKDTGIG 337 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L + ++ + Sbjct: 338 IAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAISESLTKMMQGKISVTSELGKGSIFQIE 397 Query: 213 LEK 215 + Sbjct: 398 FPR 400 >gi|319893323|ref|YP_004150198.1| Sensor histidine kinase colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] gi|317163019|gb|ADV06562.1| Sensor histidine kinase colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] Length = 463 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 17/228 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L +D + + H+I +P+ IH+ L L + + + I Sbjct: 228 TMRLELKQLDDMRQHFVQNVSHEIKTPLTHIHHLLTQLQQEHTTPQQARYIERIYDETHR 287 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110 + +R + + D + ++ + I Sbjct: 288 LSQLVRQLLLLSELDNDTHLQFDDTFLANACILDILKHENYAIDQKNQVLLYDLEAVTIR 347 Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A+ N+ A G + I + ++ I ++ +G +I + Sbjct: 348 GNARLIAQAFENVIRNAIKYTEAFGTIEIDLTAENDQMILKVRDDGPGMNDA-VKQRIFE 406 Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S DS+ + + + R+ E DH + L + Sbjct: 407 RFYKSSSHTDSNGLGLAISKSIIERHGGRIEVESKIDHGTTFTIFLPR 454 >gi|89896613|ref|YP_520100.1| hypothetical protein DSY3867 [Desulfitobacterium hafniense Y51] gi|89336061|dbj|BAE85656.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 383 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59 + + N +L + I HD+ +PI +I LE++ E E E ++ + S Sbjct: 129 LQASERSNQEYEKNRKMLVANISHDLKTPITSIQGYLEVILEGCVSEPEKIKRYLETIYS 188 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----------------IEDFIAVDKRVQV 102 + + +D + E + E + + Sbjct: 189 NTAYMNKLIDDLFLFSKLDMDKLAMNYEVLSIGAYLDDLAAELKFEFEERQFKFSYQNRT 248 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 + + + N+ A P G V + + K++ + NG Sbjct: 249 DRDYTVNIDGKRVYQGIRNIIDNAMKYGPEQGLNVMMELYAQKDDICIDIADNGPGIPEE 308 Query: 162 ---EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + E + D S + L + + + L Sbjct: 309 QLSHIFNRFYRIDTERSKDFVSTGLGLAIAKELIEAQGGTISVASTGGNGSRFTIKLP 366 >gi|60679924|ref|YP_210068.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491358|emb|CAH06106.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 549 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K ++ L + + H+ +P+ I + +EL+ + + Sbjct: 9 EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 66 Query: 62 IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105 ++K + D + + A K + Sbjct: 67 QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 126 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + K+L NL A +P G+++I + ++ + ++K +GN E Sbjct: 127 ISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QE 185 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D ++ I + + + E + L K Sbjct: 186 RIFDRFYQADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 241 >gi|53711679|ref|YP_097671.1| C-terminal part of two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|52214544|dbj|BAD47137.1| C-terminal part of two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] Length = 549 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K ++ L + + H+ +P+ I + +EL+ + + Sbjct: 9 EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 66 Query: 62 IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105 ++K + D + + A K + Sbjct: 67 QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 126 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + K+L NL A +P G+++I + ++ + ++K +GN E Sbjct: 127 ISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QE 185 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D ++ I + + + E + L K Sbjct: 186 RIFDRFYQADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 241 >gi|310825121|ref|YP_003957479.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398193|gb|ADO75652.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 714 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 29/241 (12%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45 K + L+ + + AL L + H+I +P+ I ++L L+E + Sbjct: 318 RKTLETRLAVADRMAALGTLAGGVAHEINNPLTFITSNLLYLEESLGPVAADQLPHIEEM 377 Query: 46 EDEVMQLIRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 V + F R+ VD GL + + R+ Sbjct: 378 RKAVFDAREGAHRVRTIVRELRTFSRVEDARRVPVDVHRGLDFAISMAAQELRPRARLVR 437 Query: 103 SWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKING 155 + ++ LNL + A ++P G +V + + ++ G Sbjct: 438 DYGQIPAVLGDETRLGQVFLNLLVNAAQAIPEGNPGEHTVTVHTHLSESGQVQVEIRDTG 497 Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + PE +I + + + + + + V + LL Sbjct: 498 SGM-RPEVLARIFEPFFTTKPVGVGTGLGLSICHGIVAAHGGSISARSELGKGTVFTVLL 556 Query: 214 E 214 Sbjct: 557 P 557 >gi|308272013|emb|CBX28621.1| hypothetical protein N47_G39450 [uncultured Desulfobacterium sp.] Length = 380 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 73/238 (30%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------VGIEDE 48 + + L +++L L + + H+I +P+ + N ++L+ Sbjct: 128 RRKLKLILHQDKMMSLGRLAASVAHEINNPLSGVLNYIKLMQRIMEKGVLAEDSRKKFIN 187 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVS 103 ++LI + + + V + I L + + +++ Sbjct: 188 QLELIESEISRCTQIVSGLLTFSRKSEPVFTRIDLKCLLDRCVLLSRHKMELGKIEFKLN 247 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLA 158 + +++ + ++ + + ++ + +K S+K +G+ Sbjct: 248 ISPVLPEINGDFNQLQQCVINLIFNAIDAMPDGGTLELSAQNEPAKGFVTISVKDSGHGI 307 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + D + I V + +K + + V L Sbjct: 308 TEKDIL-HIFEPFFTTKKDGYGIGLGLSTVYGIMQRHKGSVEAKSRPGKGSVFILRLP 364 >gi|303248423|ref|ZP_07334683.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490221|gb|EFL50139.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 550 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 67/231 (29%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG------------IEDEVMQ 51 S + AL L + + H++ +P+ I + +LL E ++ Sbjct: 318 QSSKMAALGKLAAGVAHEVNNPLAIIMEKAGWMRDLLSEEDIKASPNFQEFADAVSKIEF 377 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKID 110 +R + L F R +D + L + + + + Sbjct: 378 HVRRAKDVTHRLLGFARRMEPTQEDLDINLLLNQTRSFLENEASFRGITFVSDYQSDLPR 437 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFT 165 + + ++ LN+ A ++ + G +T++ + ++ G E Sbjct: 438 IESDTSQLQQVFLNIMDNAIDAIDKNGTITVTTRSLPETGEVDIAIADTGKGM-GKEAME 496 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + L Sbjct: 497 KIFDPFFTTKKVGEGTGLGLTISYSIIEKLGGHIRVTSEEGKGTTFHITLP 547 >gi|170016544|ref|YP_001727463.1| Signal transduction histidine kinase [Leuconostoc citreum KM20] gi|169803401|gb|ACA82019.1| Signal transduction histidine kinase [Leuconostoc citreum KM20] Length = 623 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 64/241 (26%), Gaps = 33/241 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 + + + S + H++ +P+ ++ + ++ L + + + +++ + Sbjct: 369 TEQQRIDAER--RMFVSNVSHELRTPLTSVRSYVDALAEGAINDPEMAHNFLGVVQNETQ 426 Query: 59 SAIIRLKFMRL---------------------AFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 I + + D +I + Sbjct: 427 RMIRMINDLLELSRLDQGTMAVKLEVINLNSLFNFVLNRFDMIIENDAKNTETPNKNYSI 486 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +R S + ++L N+ A P GG +T + +K I S+ G Sbjct: 487 QREFTSEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGVITARLIKTKTRAILSISDQGLG 546 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + +++ Sbjct: 547 IPKKDLNNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENQGSTFYIS 606 Query: 213 L 213 L Sbjct: 607 L 607 >gi|49479230|ref|YP_037715.1| sporulation kinase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330786|gb|AAT61432.1| possible sporulation kinase A [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 510 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + S L L + I H+I +P+ ++ L LL E+ + + S Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334 Query: 59 SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPENRIS-RL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|116747570|ref|YP_844257.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116696634|gb|ABK15822.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 571 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + I H+I +P+ A+ ++++L++ I D + I Sbjct: 337 EEHLKRLERLVFAGRIAAEISHEIKNPLAAMSGAVQMLEDESIPDGSRARLMSIIHREID 396 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEK 108 R+ + F + + V + + + + Sbjct: 397 RMNSLVKDFLWLAKSTHGPENVENVPVCDLIQEILDLLSARNRVASEHVIKTAFAASPIS 456 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPE 162 +I+ NL + A ++P GG + S S E + +G+ + Sbjct: 457 RIDPHHFRQIVWNLLVNALDAMPGGGHLTIAVGLHPSGDGSGRETRIDISDSGSGI-PRD 515 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALLE 214 T+I + + + V L + R+ + S Sbjct: 516 ARTRIFEPFFTTKSQGTGLGLSIVYHLVEKANGRIEVTHHEEPCGTTFSLFFP 568 >gi|327484467|gb|AEA78874.1| Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio cholerae LMA3894-4] Length = 597 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 66/233 (28%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + + L L + + I H++ +P+ AI + + +E + Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103 I + + ++ + S + + + + + Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161 + ++L+NL A +L + + + Q S+ + + NG Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGLGVGI- 536 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + + + H + L + L Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLP 589 >gi|94970302|ref|YP_592350.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552352|gb|ABF42276.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 631 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 17/228 (7%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIR 54 + I + S L A+ L S + H++ +PI AI LE+L M +I Sbjct: 382 RRIENEIELSRRLAAIGRLTSGVAHEVKNPINAIVVHLEILKNKLQEVAPDARRHMDIIE 441 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTG----- 106 ++ + L I ++ A +K V + + Sbjct: 442 NEIRRLDRVVQTLVDFTRPVELKLFDADLRKIAEEVALLAGPEAANKNVHIEFNAVEKTL 501 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + +LN+ + ++ GG + I+ + + + + + G E + Sbjct: 502 PVYVDTDLVKQAILNIVINGVQAMSDGGTLKITARSNDSAALLEISDQGPGI-PKEIQDK 560 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + I + + L E + Sbjct: 561 IFNLYFTTKKTGTGIGLAMTYRVMQLHNGALEFETEPGKGTTFRLQVP 608 >gi|15614365|ref|NP_242668.1| two-component sensor histidine kinase (stage II sporulation protein J) [Bacillus halodurans C-125] gi|10174420|dbj|BAB05521.1| two-component sensor histidine kinase (stage II sporulation protein J) [Bacillus halodurans C-125] Length = 600 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 MAK + S L + + H+I +P+ IH + L+ + M L+ Sbjct: 373 MAKRMH---QSEKLALVGEMAAGAAHEIRNPLAVIHGFISLMKQTMPDSNENKSYMPLLL 429 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------QVSWTGEK 108 + M L + + ++ + + I + Sbjct: 430 QEIDRINGIIDEMLLLAKPGAPILKRGDIKEMAEELIPLIRHSYGHDDLKIEMKLDSAVV 489 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ ++L NL + ++ G VT+ + ++ ++ G I Sbjct: 490 MMDRKQMKQVLHNLIKNSIDAVGGTGTVTLYSKVDESGWYHLFIRDTGKGI-PSHLQETI 548 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + V + + + ++ L Sbjct: 549 FEPFSSSKESGTGLGLTIVQRIIENHHGSIRLVDSSENGTTFQISLP 595 >gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 593 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + + E+ Q+I Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAGSEEEKKEIAQIIYD 410 Query: 56 SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103 S+ + + A G + + D E++ E + Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQV 470 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++ NL A P GG+V SVQ ++ +K +G+ + Sbjct: 471 DEPHFVLDPDKMEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + + + + Sbjct: 531 PFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPR 587 >gi|120611637|ref|YP_971315.1| histidine kinase [Acidovorax citrulli AAC00-1] gi|120590101|gb|ABM33541.1| histidine kinase [Acidovorax citrulli AAC00-1] Length = 298 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55 A+ + ++ + + + H+ +PI +I + LL + + R Sbjct: 50 AQAEQLR-KATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQA 108 Query: 56 -SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + LA G VD ++ + + + K V + + Sbjct: 109 TAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPDLNLVFEEPR 168 Query: 115 R-----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++IL N A PRG + + FS+ G Sbjct: 169 NLPPLFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGDRVRFSVADTGIGIAPEFH 228 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + LA + + + V S L Sbjct: 229 ASVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLP 284 >gi|49476767|ref|YP_034606.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328323|gb|AAT58969.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 340 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 98 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 157 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + I + + Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 217 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL + G + + + ++ + G + Sbjct: 218 STCPIIADHLSLMRIIGNLIKNSIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 277 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E I + K Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 334 >gi|51891554|ref|YP_074245.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855243|dbj|BAD39401.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 458 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 26/230 (11%) Query: 10 SSMDLVALLCSRI----------CHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSM 58 +L A L + + H++ +P+ I +++ L+ G ++ E + ++ + Sbjct: 219 QLQELYARLATAVDAQKRFVADASHELRTPLTIIRGNIDYLERAGTLDPEALADMKAEAA 278 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----------E 107 L+ + + + ++ D + Sbjct: 279 RMSELLEELLAMARADAGQTPELEPLALGPLVRDVCRRAGALPHQVDFVVELPPALDRIM 338 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + + + LL L A P G VT+ + + G + F Sbjct: 339 VLGHAEWLRRALLILLDNAFKYTPSGS-VTVRAGRQGEGVVLQVIDTGPGIPPEDLPRVF 397 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ + + +A + RL E S L Sbjct: 398 DRFFRGDPARSRGGSGLGLAIASWVAGLHGGRLTAESKVGEGSTFSLWLP 447 >gi|330900395|gb|EGH31814.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 351 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 112 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 171 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 172 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 231 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S+ A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 232 GDSQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 290 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 291 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 342 >gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 648 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 252 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 311 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E V + Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 371 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ + ++ + S+ +G+ Sbjct: 372 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 431 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 432 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 490 >gi|308274523|emb|CBX31122.1| hypothetical protein N47_E46340 [uncultured Desulfobacterium sp.] Length = 494 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 18/233 (7%), Positives = 62/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + K+ L + + L + + H I +P ++ L L+ + + + +I Sbjct: 253 LEKSREHLLQTEKMALVGQLAAGMAHSIRNPFTSVKMRLFSLERSQNLTETQHDDINVIS 312 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKI 109 ++ I I + + + V+V Sbjct: 313 DEIRHMDTIVQNFLEFSRPPRLKMQKISPSHIVDLAMQLLEHRIKSYDVTVKVVREKSLS 372 Query: 110 DLSRERAKILLNLFMVAHASLPRGGK--------VTISVQDSKNENIFSLKINGNLARFP 161 +++ + ++ + + + + + + +G Sbjct: 373 EINGDPEQLKEVIVNLIVNACEAMVRGGLITIYESEFFDPSIGKAAVLKISDDGPGI-PE 431 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++++ + + + + E+ R+ E + L Sbjct: 432 AIIGKVMEPFFTTKEEGTGLGLSIASRIIKEHSGRIDIESKEREGTTFKITLP 484 >gi|291279375|ref|YP_003496210.1| hypothetical protein DEFDS_0982 [Deferribacter desulfuricans SSM1] gi|290754077|dbj|BAI80454.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 499 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 78/234 (33%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53 M +N+ ++ + + L + I H+I +P+ +I + +LL + + V +I Sbjct: 260 MHRNM-LHVDRLTTIGQLMASISHEIKNPLNSIMINTDLLMMYCEKMGDKNTKRLVEGII 318 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + +I + +R + V+ +++++ D + +Q + Sbjct: 319 SDAERIKMIIDQTLRFSKYTPNHVELINVEKFLNDIEAYVKRILFDREYIVFDIQKNGDW 378 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161 L R ++ + ++ V + IF NG Sbjct: 379 SDCYLKMSRIQLEQVFVNLIKNAIDAVKDVDNPRVVLDVNCDMDHIIFRFIDNGIGM-SE 437 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E I + + D + V + N ++ E + + + L++ Sbjct: 438 EVKRNIFNEFYTTKKDGTGMGLSIVKEIIDANNGEIIVESKEGEGTIFTIKLDR 491 >gi|260774752|ref|ZP_05883655.1| osmolarity sensory histidine kinase EnvZ [Vibrio coralliilyticus ATCC BAA-450] gi|260609314|gb|EEX35466.1| osmolarity sensory histidine kinase EnvZ [Vibrio coralliilyticus ATCC BAA-450] Length = 436 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 66/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HD+ +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 279 Query: 66 FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ + VD DI + + + + NL + Sbjct: 280 YLKPVNKESFIEVDLNEIANDIATSEGGYEIQIETELQQPLKVTNGSPIAIKRAVSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ V ++ NG + F G+ + + Sbjct: 340 NAIRYGNGWVKVSTGVTADNKLVWVCIEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V +A ++ ++ + Sbjct: 400 GLAIVKRIASQHNGNVIINNRSGGGLRAQISFP 432 >gi|239907953|ref|YP_002954694.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239797819|dbj|BAH76808.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 821 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + + LVA+ L + + H+I +P+G I ELL + ++ + + + + Sbjct: 583 RRMLEQLRQTEKLVAVGKLAAGLAHEINNPLGVIACYAELLRQSLVDPQALDDLAVIERH 642 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDL 111 A++ K +R + + G DI + +++ Sbjct: 643 AVMAKKVLRDLLDFARPRPAKPGPCDIKALLSGLARIFEVQAQSRRSSLRLDVPEGIPLA 702 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPEKFT 165 + + L + +L + + + ++ NG + Sbjct: 703 KADAGALEQVLSNLLLNALDAVEPGQGRITLAAAASEDGGQVNLTVADNGPGIPAVDLPH 762 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + D V + L Sbjct: 763 IFDPFFTTKEAGRGTGLGLAVAFGLMRDMGGTIEAQN--DGGAVFTLTLP 810 >gi|149180991|ref|ZP_01859492.1| sporulation kinase B [Bacillus sp. SG-1] gi|148851275|gb|EDL65424.1| sporulation kinase B [Bacillus sp. SG-1] Length = 406 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 21/224 (9%), Positives = 58/224 (25%), Gaps = 13/224 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII 62 N + L + + H+I +P+ + L+ +++ + + + L Sbjct: 179 EQVQNAERLKTTGQLAAAVAHEIRNPLTVVKGFLQYYVEDNELNKQYKRNFSLMIDELDT 238 Query: 63 RLKFMRLAFGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + ++ + +QV Sbjct: 239 AEHVISQFLSIAKPEKESNLSRVEVQVVLDDVTELLKSYGLLHDNHIDLQVQEECYVFAN 298 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 S E ++L+NL A + P G V + + K+ ++ G E + Sbjct: 299 SIEFKQLLINLIKNAIEASPHGSTVLVKAEKKKDRVEIIVEDKGQGMSKEEISL-LGTPF 357 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + Sbjct: 358 YSLKSRGTGLGLMICYNIVEKYNGTIQFTSQLGVGTTVTLRFPR 401 >gi|116748835|ref|YP_845522.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697899|gb|ABK17087.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 721 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 66/248 (26%), Gaps = 36/248 (14%) Query: 2 AKNICFNL-----SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVM 50 A+ + + + AL L I HD + +G I E+ +E E + Sbjct: 330 AEEEQIRVEARLRQAQKMEALGTLAGGIAHDFNNILGIIIGYSEMAHWNAEEGSPIREDL 389 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Q + ++ A ++ + + +G I + + + + Sbjct: 390 QHVFKATTRARELVRQILAFSRRGEQEKKPVQIGLIVKEAMLMLRASLPSTIDMKMDIAS 449 Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENI 148 + ++L+NL A ++ G V S Sbjct: 450 KSVVLADPTQVHQVLMNLCANAAHAMRENGGVLQVSLTDVSIGPDSVHVPSDLRPGPHVQ 509 Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 ++ G +I D + + V + + + + I Sbjct: 510 LTVMDTGPGILPSAL-DRIFDPFFTTKELGVGTGLGLSVVHGIVRSHGGTVSADSIPGEG 568 Query: 207 VVLSALLE 214 LL Sbjct: 569 AAFRVLLP 576 >gi|255014923|ref|ZP_05287049.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 761 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49 A+ M L + + H+I +P+ AI L++ + + Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++LI + + M F + + Q++ + Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L N A +V + ++ G EK Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ D + + ++A + + L K Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFMLTLPK 757 >gi|228951141|ref|ZP_04113257.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808551|gb|EEM55054.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 463 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 14/219 (6%), Positives = 57/219 (26%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ + E + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKESTPSEQRMRYLSIIKDESDYITNLVQDLFSLA 295 Query: 68 RLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120 ++ + L + + ++ ++VS++ + ++++ Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERCIKVSFSCPPTLLVNLDEQRFEQVIV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + IS+ + +++ G + + Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + D+ L Sbjct: 416 TGGTGLGLSIVKEIVELHDGNITVTSEVDYGSCFIISLP 454 >gi|258404216|ref|YP_003196958.1| histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796443|gb|ACV67380.1| histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 475 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 16/224 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA 60 L + L ++ + + I H+I +P+G I +S E+L + + D +L+ + Sbjct: 252 ERELLQNEKLASMGRMVASIAHEIRNPLGIIRSSSEMLYKKALRDNSQNARLLHAVFQES 311 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKID 110 + + Y + D Q+ + + T Sbjct: 312 KRLSQTVHEFLDYARPKQPAMREVDCSQILQRALAFLEQECAAHEIQVTTALPETLPSQG 371 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + N+ A S+ GG++ IS +++ ++ G + ++ Sbjct: 372 DDDLLYRAFYNIISNALQSMDGGGELDISGGREEDQIWICIRDTGPGFDATML-DKYLEP 430 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + L+ Sbjct: 431 FYTTKDQGTGLGLAIVKNIVDSHGGSLNITNTET-GAEVCIRLQ 473 >gi|171320726|ref|ZP_02909738.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171094020|gb|EDT39120.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1022 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 33/245 (13%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + D + L + H+I +P+ I +LELL+ ++ ++ Sbjct: 484 LVHQLEEAVRAADSANAAKSSFLAAT-SHEIRTPLNVILGNLELLERTALDASQQSRVQT 542 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 SA L + ++ + + IE + I + Sbjct: 543 LRASAEGLLAIVSDILDFSKIEAGAMSVESIEFDVIAVIERELAAFAPVARAKGLPLFAD 602 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155 + S A+++ NL A G V E ++ G Sbjct: 603 IDASAAQRMRGDPTRLAQVVGNLLGNAIKFTGEGRIVARVAVGHDVRGKPEIAIGIEDTG 662 Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 ++ ++ + + L + + Sbjct: 663 IGIDPAQQN-RLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISVHSAPGVGSLF 721 Query: 210 SALLE 214 + L Sbjct: 722 TVRLP 726 >gi|150008085|ref|YP_001302828.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|298376562|ref|ZP_06986517.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] gi|149936509|gb|ABR43206.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|298266440|gb|EFI08098.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] Length = 761 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 58/233 (24%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49 A+ M L + + H+I +P+ AI L++ + + Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++LI + + M F + + Q++ + Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L N A +V + ++ G EK Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ D + + ++A + + L K Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFMLTLPK 757 >gi|320451219|ref|YP_004203315.1| sensor histidine kinase [Thermus scotoductus SA-01] gi|320151388|gb|ADW22766.1| sensor histidine kinase [Thermus scotoductus SA-01] Length = 468 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 56/206 (27%), Gaps = 17/206 (8%) Query: 23 CHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK---------FMRLAFG 72 H++ +PI AI + LL + + + + + A K Sbjct: 255 SHELRTPITAILGHVGFLLRRTPLTEAQRESLEVVKREAERMGKLVSDLLELSQTGSWRM 314 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 V L ++++ + V+ S ++L NL A + R Sbjct: 315 EPAPVRIQDLLEEVKEEFAKSFEGEIEVEASPELWVQGDPDRLHQVLANLLSNAIKAGAR 374 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SHDIQFYYVI 187 + + + ++ +G P F + + + + V Sbjct: 375 HIWLRAFDL--GEKVVVRVEDDGEGIPKEHLPHLFERFYRVDKARDRERGGSGLGLAIVK 432 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALL 213 + + + E S L Sbjct: 433 AILEAHGGEIWVESEVGKGTAFSFSL 458 >gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 674 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 278 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPNYKGLSVI 337 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E + + Sbjct: 338 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHV 397 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ +S++ + S+ +G+ Sbjct: 398 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGIAAE 457 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 458 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 516 >gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] Length = 946 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + VQ + + S++ G Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCAGDYLQISVRDTGEGIPA 628 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + E + + Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687 >gi|118477337|ref|YP_894488.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118416562|gb|ABK84981.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 375 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50 MAK++ ++ + + + S I HD+ +P+ ++ +LL + E V Sbjct: 133 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGSQFHTNREECEQYVS 192 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100 L R S + ++ + +++ ++E + + + Sbjct: 193 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 252 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++ N+ + G ++ I + +K G Sbjct: 253 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQCIPN 312 Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + G + +A +K + + V + L + Sbjct: 313 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALPR 371 >gi|117926945|ref|YP_867562.1| signal transduction histidine kinase, nitrogen specific, NtrB [Magnetococcus sp. MC-1] gi|117610701|gb|ABK46156.1| signal transduction histidine kinase, nitrogen specific, NtrB [Magnetococcus sp. MC-1] Length = 355 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 67/229 (29%), Gaps = 22/229 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59 + + L S+ +AL + H++ +P+ I + +LL+ +LIR Sbjct: 127 RRLNETLDSLGSLAL---AVAHEVKNPLAGIRGAAQLLEMESTSETGAICTELIRSEVDR 183 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRER 115 L + I + ++ + + V + Sbjct: 184 ISRLLDSLLGLAEDHPINQKNINIHEVLDHVVRLCSSSGAHLVRDYDPSLPEISGDRDKL 243 Query: 116 AKILLNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ LNL A + ++ ++ + + ++ NG E Sbjct: 244 IQLFLNLISNATEATGKEGEVRISSRISKQIRLTQGRRQQHIVVEIRDNGPGI-PHELRK 302 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V + + + + H++ ++ E L Sbjct: 303 RIFLPFVTTKSNGTGLGLAISQKIVHDHDGQMALESRPGE-TAFRVFLP 350 >gi|296271226|ref|YP_003653858.1| histidine kinase [Thermobispora bispora DSM 43833] gi|296094013|gb|ADG89965.1| histidine kinase [Thermobispora bispora DSM 43833] Length = 487 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 57/215 (26%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIRLSSMSAIIRLK 65 + H++ +P+ +I E L+ + E M L+ + + Sbjct: 253 FVADASHELRTPLTSIRGFAEFYRRVPGSDPDRLMARIESEATRMSLLVEDLLLLARLDQ 312 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 L+ + + + V V+ + + +++ NL Sbjct: 313 QRPLSKRPVDMLAIAADAVGDAKTLCPDRDVSLEVEAEEALIVMGDEQRLRQVVGNLMNN 372 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES---TIDSH 179 A P+G +T+ V + F ++ G + F + + Sbjct: 373 AVTHTPQGTPITVRVGTAGGAVYFEVEDAGPGLTPEQAARVFERFYRADPSRARDNQGGS 432 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + + Sbjct: 433 GLGLAIVESLVKAHGGTVSVRSEPGKGAAFRFTIP 467 >gi|157363248|ref|YP_001470015.1| multi-sensor signal transduction histidine kinase [Thermotoga lettingae TMO] gi|157313852|gb|ABV32951.1| multi-sensor signal transduction histidine kinase [Thermotoga lettingae TMO] Length = 863 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 69/225 (30%), Gaps = 17/225 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 L L + +R+ H++ +PI I L L + + + ++ Sbjct: 635 EQERKDKEKLALLGEMSARVAHELRNPITVIGGFLNRLKKNISDPQARERYLNILSNEVD 694 Query: 59 SAIIRLKFMRLAFGYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110 + + + ++D L + A ++ + + E + Sbjct: 695 NLQNIVSEILEFSRSARNIDESKFQINELIEEVAFFMQEKAARNKINLEFMLSPLQEVVA 754 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++L+NL A + P+GG++ + Q ++ + S+ G E +I Sbjct: 755 DRNRIKRVLINLVQNAIEATPQGGRIILKSQQDQDRVLVSVFNTGEPI-SEENLRKIFVP 813 Query: 171 NVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ R+ E + Sbjct: 814 FYTTKTYGTGLGLPICKKIIEDEHGGRIWAESKP-EGTEFKFEIP 857 >gi|150378210|ref|YP_001314805.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150032757|gb|ABR64872.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 534 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIR---- 54 ++ L+ ++ + + S + H++ P+ AI N LL ++ Sbjct: 293 QDELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLRDMDDAVATRMREALEEV 352 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWT 105 + +F+ D +G+ + + + Sbjct: 353 ASQSLRAGQIIKHLREFVTNGETEKAPEDIRKLVGESAALALVGSREQGVRTVFEYLPDA 412 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162 + + ++L+NL A ++ + ++ E ++ +G E Sbjct: 413 EMVMVDRIQVQQVLINLMRNAIEAMRHVDRRELTIRTMPADPGEIAVVVEDSGGGI-PEE 471 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ V + I + + + L Sbjct: 472 VAGQLFKPFVTTKASGMGIGLSISKRIVEAHGGEMTVSKNAAGGATFRFTLP 523 >gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 946 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 S + H++ SP+ I +LL +E++ ++ + + Sbjct: 582 SILSHELRSPLNPILGWTQLLQTKKLEEQQVEEALAVIERNVKLQTQLIDDLLDMAKILR 641 Query: 71 ---FGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKILLNLFM 124 VD + +V+ +V +S +I+ NL Sbjct: 642 GKITLNMTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNNCYIKGDQGRIQQIIWNLLS 701 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179 A P GGKV I+++ + ++ G Sbjct: 702 NAIKFTPEGGKVMINLEQVNQQVQITVTDTGKGIDPEFLPHIFESFRQEDVSITRHYGGL 761 Query: 180 DIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V L + ++ + +D L Sbjct: 762 GLGLSIVKYLVDAHGGTIVADSLGEDKGATFLITLP 797 >gi|83648722|ref|YP_437157.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83636765|gb|ABC32732.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 493 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 12/221 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + I + + L S I HD+ +PI + E+LD+ + +Q + Sbjct: 274 MQERIQRYIQDRE---TLFSAISHDLKTPITRLRLRAEMLDDDAQRGKFIQDLEDLDHMV 330 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L+ ++ + V+ L + Q I + + ++ + + + Sbjct: 331 HGALQCVKDTTVHENPVNI--DLHYLLQQICEGADLQRKKVTLSGLLEQPFWGKPLALKR 388 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174 + +L G + + ++D + +++ G E +I + Sbjct: 389 AFSNIIDNALFYGHQAEVFLEDVQEGVHVAVRDFGPGVPEME-QDRIFEPYVRLEKSRNR 447 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + H + RL + V+ L + Sbjct: 448 NTGGSGLGLSIARNIIHAHGGRLKVRNHEQGGFVVEVWLPR 488 >gi|89093821|ref|ZP_01166767.1| C4-dicarboxylate transport sensor protein, putative [Oceanospirillum sp. MED92] gi|89081951|gb|EAR61177.1| C4-dicarboxylate transport sensor protein, putative [Oceanospirillum sp. MED92] Length = 742 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 67/232 (28%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + L L + + I H++ P+ AI E+ E+ ++++ + Sbjct: 499 TQNELIQTAKLAVLGQMSAGINHELNQPLTAIRTYADNAKAFMEIGKSETAENNLLEISK 558 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------E 107 L+ A I + +G+ +S+ + + +V Sbjct: 559 LTERMAKIIHPLKEFSRKTSGTPESVCLKNVRDGAMSIMYGRLSKVHADVNWPDSLENVY 618 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFT 165 + + ++L+NL A ++ + V K ++ G+ + Sbjct: 619 VMGDTVRLEQVLVNLISNALQAMEGHPAPAVDVTLEQGKTLICLQVRDYGSGIPEEDLG- 677 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + + L D L + Sbjct: 678 RVFEPFYTTKKAGQGLGLGLSISHRIIESMGGALSVLNHPDGGAQFRICLPR 729 >gi|326423961|ref|NP_761037.2| sensor histidine kinase [Vibrio vulnificus CMCP6] gi|319999339|gb|AAO10564.2| Sensor histidine kinase [Vibrio vulnificus CMCP6] Length = 805 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 58/243 (23%), Gaps = 34/243 (13%) Query: 4 NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 L + + A + + H+I +P+ + + ++L + + +E + ++ Sbjct: 334 EKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLNEEQRKHLKT 393 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------- 105 S + + Y+ + + + I V + Sbjct: 394 LYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVY 453 Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGN 156 ++L NL A R ++ N +K G Sbjct: 454 TTVPTGRWYCADKARLRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGI 513 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +I + V +A + + + Sbjct: 514 GIPES-AQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFT 572 Query: 211 ALL 213 L Sbjct: 573 VEL 575 >gi|262280535|ref|ZP_06058319.1| two-component sensor [Acinetobacter calcoaceticus RUH2202] gi|262258313|gb|EEY77047.1| two-component sensor [Acinetobacter calcoaceticus RUH2202] Length = 452 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 57/215 (26%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78 I H++ +P+ + +E D+ I + + + + Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ + + K Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTVVFPK 445 >gi|296121745|ref|YP_003629523.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296014085|gb|ADG67324.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 584 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 24/226 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 +L S + H++ +P+ +I E L ++ +Q I + + Sbjct: 349 ENLRREFVSNVSHELKTPLTSISAYAETLLNGAMEDEETCRTFLQRIEEQAERLNKLIAD 408 Query: 67 MRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + V + V + E I S Sbjct: 409 LIALARLDSIEQAFELEPVNATYILQKSIDEHQGVAKSKQIELISVAPNDEMEVIADSDG 468 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A P GG+VT+ + + ++ G E +I + Sbjct: 469 FQTIIDNLLDNALNYTPAGGQVTVRWRRDGEWSRIDVEDTGVGI-PREHQARIFERFYRV 527 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L + + LL+ Sbjct: 528 DKARSREVGGTGLGLSIVKHLCQVFGGSIRVTSQVGSGSQFTVLLK 573 >gi|229159730|ref|ZP_04287739.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803] gi|228623755|gb|EEK80572.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803] Length = 461 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 56/219 (25%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQL-------IRLSSMSAIIRLKFM 67 + + + H++ +P+ + ++ L E ++ ++ + Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFLLA 295 Query: 68 RLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++ V + + L + V + + + ++++ Sbjct: 296 QMEKHSFSIVVTEVQLHSFLTRITEKVNAMYKERHVKVSLTCPSSLLVKLDEQRFEQVIV 355 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 N+ A+ + ISV + ++K G + Sbjct: 356 NILSNAYRHSKEHSHINISVTEETKRISITIKDEGEGIPPEDLSHIFDRFYRVDKARSRA 415 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + +H L Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVSSEVNHGSCFIISLP 454 >gi|218779630|ref|YP_002430948.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761014|gb|ACL03480.1| Histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 417 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 79/226 (34%), Gaps = 17/226 (7%) Query: 3 KNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 +++ ++ + A+ + +R+ H+I +P+ A+ S+ LL + D++M++I Sbjct: 181 RSVRQHMQRVEKMAAVGEMAARLTHEIKNPLAALVGSVRLLHDDLVLEPANDKLMRIILR 240 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGE 107 + + + I L + I + D+ VQ+ + Sbjct: 241 EADRLGDLVNEFLQFARPVAKNPTPICLANHLNEIVELFRRDRMAADRLTIHVQLDPSHW 300 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166 + +++ N + + ++ G VTI + N +K +G+ + Sbjct: 301 IAMDASHLRQVIWNFLLNSAQAIESEGHVTIITEAVDNETIAIRVKDDGSGIDENTIKS- 359 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + V + L E + + S + Sbjct: 360 LFEPFFTTKSQGSGLGLCVVYRILEAYGFLLDVESVPEKGSTFSVM 405 >gi|83309719|ref|YP_419983.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944560|dbj|BAE49424.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 796 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 69/245 (28%), Gaps = 32/245 (13%) Query: 2 AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 +N+ S + A+ L + HD + + A+ +LL + + ++ Sbjct: 407 QRNLEMQFAQSQKMQAMGQLAGGVAHDFNNLLTAMIGFCDLLLQRHGAGDPSFADIMQVK 466 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108 ++ A ++ + L+ + D + + + + Sbjct: 467 QNANRAASLVRQLLAFSRRQALQPRLLNVTDALAELSNLLRRLLGETIELRMIHGRALGL 526 Query: 109 -IDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152 + ++++NL + A ++P + + + + + + Sbjct: 527 VRVDPGQFDQVIINLAVNARDAMPGGGALTIRTNAVHVDQPIQRGPELMPAGDYVQIEVA 586 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E +I + + + V + + + E S Sbjct: 587 DTGTGI-GKENLARIFEPFFSTKEVGAGTGLGLSTVYGIVRQTDGFIFVESEPGQGATFS 645 Query: 211 ALLEK 215 L + Sbjct: 646 IYLPR 650 >gi|37680448|ref|NP_935057.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37199196|dbj|BAC95028.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 805 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 58/243 (23%), Gaps = 34/243 (13%) Query: 4 NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 L + + A + + H+I +P+ + + ++L + + +E + ++ Sbjct: 334 EKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLNEEQRKHLKT 393 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------- 105 S + + Y+ + + + I V + Sbjct: 394 LYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVY 453 Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGN 156 ++L NL A R ++ N +K G Sbjct: 454 STVPTGRWYCADKARLRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGI 513 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +I + V +A + + + Sbjct: 514 GIPES-AQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFT 572 Query: 211 ALL 213 L Sbjct: 573 VEL 575 >gi|150019402|ref|YP_001311656.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905867|gb|ABR36700.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 411 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + K+ L + L + I HD+ +PI +I+ +E L + + + +I Sbjct: 172 LKKSEEMKLEYEENRKALIANISHDLKTPITSINGYIEALVDGVVTSPDKVNNYLNIIHN 231 Query: 56 SSMSAIIRLKFMRLAFG-YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 ++ + + L +D G+ + + D + V E R Sbjct: 232 NTTYINNLIDDLFLFSKLDMQKLDFNFGIVKFKAFMSDLMEEFDFVLKEKDIEFKFEDRL 291 Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 +++ N+ A + + ++ +K NG Sbjct: 292 SEELEINIDGKRIYQVIRNVIGNAIKYGRQKDSIIKVELSNNNEWIKIEIKDNGPGIPED 351 Query: 162 ---EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + E T D S + + + ++ I + L Sbjct: 352 KLSNIFNRFYRIDTERTKDFMSTGLGLAIAKEMVEAHGGKIYASSIMGKGSTFTIELP 409 >gi|323488493|ref|ZP_08093737.1| integral membrane sensor signal transduction histidine kinase [Planococcus donghaensis MPA1U2] gi|323397710|gb|EGA90512.1| integral membrane sensor signal transduction histidine kinase [Planococcus donghaensis MPA1U2] Length = 453 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 63/220 (28%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRL--- 69 L + H++ +P+ I +S+E+L+ E + + ++ + + + Sbjct: 231 LVANASHELRTPLSTILSSIEVLEMEREEKDPFTGRILDGLKHEVRRMTVLVSDLLTLAQ 290 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + L + +D + + ++L Sbjct: 291 ADSPGANALVCNWCNLTLASEQLLSSFKARATAKKIDLTLDAPAEVNVYADCDKLVQLLS 350 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 L A GG VT+++Q + + +++ G + +I D Sbjct: 351 ILLDNAINYTLEGGSVTVTLQIRNDSLLLAVRDTGIGIAAAD-QDRIFDRFYRADKARTR 409 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 H + + + + E + + Sbjct: 410 KEGGHGLGLAIGKWIVDAHGGTIWVESSAGEGSLFQVRIP 449 >gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 940 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 55/236 (23%), Gaps = 28/236 (11%) Query: 6 CFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 L + + + H+I +P+ I ELL + E + + SA + L Sbjct: 537 KVRAEEASLAKSSFLAMMSHEIRTPMNGIIGMNELLLGTRLTSEQLDYAQAVQESAELLL 596 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWTGEK 108 + Y+ + L I+ + + + Sbjct: 597 TVINDILDYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLF 656 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164 ++LLNL A RG S F + G PE Sbjct: 657 QGDPGRLRQVLLNLVSNAVKFTERGTIDIRVFPVSDTGSQVTIRFEVIDTGIGI-APEIR 715 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L ++ + L Sbjct: 716 DCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVELMGGKIGVQSKPGEGSTFWFTLP 771 >gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 443 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 64/230 (27%), Gaps = 23/230 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLK 65 L + L + + + H++ +P+ AI ++L + + ++ + L Sbjct: 168 LEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTGQQADMVERILNNGKHLLM 227 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TGEKID 110 + ++ + + L + I S ++ Sbjct: 228 LLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAKKLSLLVQIDLQNPLLVN 287 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-----KFT 165 +IL+NL A G + +K G + + Sbjct: 288 DPVRIKQILINLLSNAIKFTDSGSIWIDVKDLPGSWVEIRVKDTGIGIASKDFKYIFEAF 347 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + VD ++ + + L +++ E + + L + Sbjct: 348 RQVDQSITRKYAGTGLGLAIIDSLVQMMSGKIILESQLGVGSIFTITLPR 397 >gi|194337020|ref|YP_002018814.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309497|gb|ACF44197.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 650 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 71/236 (30%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + ++ + L + HD+ + + I E+L+ + Q + Sbjct: 275 ETQLQQAQKLESIGRLAGGVAHDLNNLLTPILGYAEMLEMELAGNAGQQEEVRAIQRAST 334 Query: 60 -----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDL 111 L F R G V+ L + +++ + RV+ Sbjct: 335 SARKLIWQLLAFSRTQTLELGEVELNAMLKEFGEMLRQSVGSGVRVEFELAPSLLPLHAN 394 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-----------SKNENIFSLKINGNLARF 160 + + ++L+NL + A ++P GG++ + + G Sbjct: 395 AGQLEQVLVNLALNARDAMPSGGRLCFRTSFEKLSEERDGLPPGRYAVLEVADTGCGI-R 453 Query: 161 PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + V + +++ ++ + LL Sbjct: 454 PEDMPRIFEPFFTTKGPGKGTGLGLSTVYGIVRQHRGNIVVSCPEGDGCSFRVLLP 509 >gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1739 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ + + + + H+I +P+ AI ELL ++ + E + ++ + Sbjct: 1349 LRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQDIIQDTEGLHHLQTIRRNG 1408 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104 L + + + + I + + Sbjct: 1409 DYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKEAGLELTVEYGQQI 1468 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163 ++ ++L+NL A P G + DS + G E+ Sbjct: 1469 PASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMDSDPIRLCIDVIDTGIGITL-EQ 1527 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 Q+ V T + LA + + + Sbjct: 1528 QEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGSTFTL 1581 >gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 512 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL DE + M L++ ++ Sbjct: 278 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 337 Query: 58 MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + ++ G +D ++ L D V++ + Sbjct: 338 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDSAVELRFDENSPQ 397 Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L N A +G + + +++ F + G +K Sbjct: 398 IVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCVTDTGKGIPDEQKHE 457 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +S + + L ++ E + Sbjct: 458 IFNRFVKLDSFVQGAGLGLSICQSLVKRMGGKIGVESREGEGSCFWFT 505 >gi|225863841|ref|YP_002749219.1| sensory box histidine kinase [Bacillus cereus 03BB102] gi|225787888|gb|ACO28105.1| sensory box histidine kinase [Bacillus cereus 03BB102] Length = 355 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50 MAK++ ++ + + + S I HD+ +P+ ++ +LL + E V Sbjct: 113 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGSQFHTNREECEQYVS 172 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100 L R S + ++ + +++ ++E + + + Sbjct: 173 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 232 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++ N+ + G ++ I + +K G Sbjct: 233 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQCIPN 292 Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + G + +A +K + + V + L + Sbjct: 293 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALPR 351 >gi|158340378|ref|YP_001521734.1| two-component sensor histidine kinase, putative [Acaryochloris marina MBIC11017] gi|158310619|gb|ABW32233.1| two-component sensor histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 489 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 12/202 (5%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +PI I LEL+ D+ + E ++L+ + M Sbjct: 280 HELRTPITVIRGHLELIGDDPQEQQETIELVLDELDRMGRLVNDMVALAKSEHPDFLQYE 339 Query: 83 LGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + D++Q I D + ++ + +G + + LLNL A P G Sbjct: 340 MIDLKQFIYDLHTKAQAIAKHNWQLTLKCSGSMMGDRQRLTGALLNLLRNAAQHTPSTGT 399 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---ESTIDSHDIQFYYVILLAHE 192 + + + + + +F +K G E +I D + + + V Sbjct: 400 IELGCKQTLTQVVFWVKDTGKGIAL-EDQQRIFDRFARLGQRQSEGSGLGLAIVQAFTKA 458 Query: 193 NKIRLLPEIIDDHNVVLSALLE 214 + ++ L Sbjct: 459 HGGKIELMSQLGVGSTFRITLP 480 >gi|78224348|ref|YP_386095.1| histidine kinase [Geobacter metallireducens GS-15] gi|78195603|gb|ABB33370.1| histidine kinase [Geobacter metallireducens GS-15] Length = 484 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 63/218 (28%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL 69 L S I H+I +P+ I +++ L + V+ + + Sbjct: 251 GQLASGIAHEIRNPLNYISLAIDHLKSEFTAACPDKTERVVPVADKIKEEVRRANYMVVN 310 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLN 121 + + I ++IE + V+ + + + + + Sbjct: 311 FMNFGRPLKLRITEISYRELIEKALPLLEEKLAEQRVTVRTAIPTDLPAMRVDGEMLRNC 370 Query: 122 LFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 LF A ++P GG VT + +N + + G R + ++ + Sbjct: 371 LFNFVTNAAQAMPDGGTVTLGATFDREQNRFLLTFSDEGCGIREEDL-AKVFQPWYTTRE 429 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ + + LL Sbjct: 430 AGIGLGLAITERIVREHGGEIRVASSAGKGTTFTVLLP 467 >gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 1039 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + + L + + H+I +P+ AI +L E+E + + + + Sbjct: 668 AKNRAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 725 Query: 62 ----------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TG 106 K S + L + + V++ + Sbjct: 726 LLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKSDAVKLEFVAPEEPC 785 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++++NL A +G + + F + G ++ + Sbjct: 786 FAHIEKNRLSQLIINLVTNAIKFTIQGSIRFGYKRQNNE-LYFYVADTGCGIPQDKQKSI 844 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + L ++ E + + L Sbjct: 845 FGRFVKLNSFAQGTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWFTLP 893 >gi|329851625|ref|ZP_08266382.1| sensor protein fixL [Asticcacaulis biprosthecum C19] gi|328840471|gb|EGF90043.1| sensor protein fixL [Asticcacaulis biprosthecum C19] Length = 498 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 62/243 (25%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSM--DLVAL--------LCSRICHDIISPIGAIHNSLE----LLDE----- 42 ++ L + +L L + S + H++ P+ AI N ++ LL + Sbjct: 249 RQDTTAQLEQLHGELARLSRLNELGEMASTLAHELNQPLSAIANYVQGSVRLLKDVETEP 308 Query: 43 --------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 + ++ ++ + ++ Sbjct: 309 ASTVRFALEETAKQALRAGKIIHHLRQSATHGTTEMRPDSLRSIIEEAAALALAGSKEKG 368 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSL 151 + + + + ++L+NL A ++ + +++ + + Sbjct: 369 IKTVFGYQAIADQVLIDRVQIQQVLINLIRNAGEAMRTSERRELTLTTLDASPDMVAVEV 428 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + Q+ V S I + + + D Sbjct: 429 ADTGPGI-AEDVAAQLFQPFVTSKPGGMGIGLAISKRIIEAHDGTIEVRRNSDGGATFRF 487 Query: 212 LLE 214 L Sbjct: 488 TLP 490 >gi|307265843|ref|ZP_07547393.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919118|gb|EFN49342.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 70/219 (31%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + S I H++ +P+ +H+ +E + + E ++ + + I +K + Sbjct: 242 LRKQMTSDIAHELRTPLTTLHSHIEAMLDGVWEPTHERLKSLNEEVLRLINIVKDLETLN 301 Query: 72 GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + + + + + + A++ + Sbjct: 302 KFESDMLKLNKIKFDVSELVKNILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I+ + +F ++ NG + F + G Sbjct: 362 NLISNSNKYTPVGGKIKIAFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 421 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I ++ + ++ E + + + Sbjct: 422 TGGSGIGLSIAKVIVLAHGGKINVESEINKGSKFTVKIP 460 >gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 1039 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + + L + + H+I +P+ AI +L E+E + + + + Sbjct: 668 AKNRAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 725 Query: 62 ----------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TG 106 K S + L + + V++ + Sbjct: 726 LLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKSDAVKLEFVAPEEPC 785 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++++NL A +G + + F + G ++ + Sbjct: 786 FAHIEKNRLSQLIINLVTNAIKFTIQGSIRFGYKRQNNE-LYFYVADTGCGIPQDKQKSI 844 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + L ++ E + + L Sbjct: 845 FGRFVKLNSFAQGTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWFTLP 893 >gi|253699164|ref|YP_003020353.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774014|gb|ACT16595.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 689 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 71/241 (29%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 MA+ I + M+ V +L I HD + + + + L + E + + + Sbjct: 444 MAEQIRQS-QKMEAVGVLAGGIAHDFNNLLTGMIGYVSLALMTMKEEDPAANYLDRVVSA 502 Query: 57 SMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R + VD + ++ +++ + ++V + + Sbjct: 503 ADRAADLTQRLLAFSRKQISHPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPREGMLPVV 562 Query: 113 RE---RAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKIN 154 + ++++NL A ++P + + + S+ Sbjct: 563 ADSSQVDQVVMNLVTNARDAMPAGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDT 622 Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G + + + + V + E++ L + L Sbjct: 623 GTGMDEATRAHVLEPFFTTKEVGKGSGLGLAIVYGIVKEHEGYLEICSEPGVGTTFNVYL 682 Query: 214 E 214 Sbjct: 683 P 683 >gi|159043629|ref|YP_001532423.1| integral membrane sensor signal transduction histidine kinase [Dinoroseobacter shibae DFL 12] gi|157911389|gb|ABV92822.1| integral membrane sensor signal transduction histidine kinase [Dinoroseobacter shibae DFL 12] Length = 585 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIED------E 48 + + S L AL + + + H++ P+ A+ L LL ++ Sbjct: 346 LEQAEQTLAQSQKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRKRPDESLSSFAR 405 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + LI F R VD L ++E I + ++ Sbjct: 406 IDDLIDRMGKITRQLKSFARKGEDAFQIVDLREALSAALAIMEPQIKQEFVKIERNMPKQ 465 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163 + ++++NL A + + + + S++ NG E Sbjct: 466 PVLVMGDRIRLEQVIVNLLRNAMDATAGTPNPVVEIDLTTGETARLSVRDNGPGITDFE- 524 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + D + + ++ RL+ V L Sbjct: 525 --QIFEPFYTTKRPGDGVGLGLAISSGIVSDHGGRLMARNRTSRGAVFEMRLP 575 >gi|322436618|ref|YP_004218830.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164345|gb|ADW70050.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 386 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS------LELLDEVGIEDEVMQL 52 MA+ S L A+ L S I H+I +P+ A+ N + L++ + ++ Sbjct: 148 MAEQALRR--SEKLAAVGQLASSIAHEINNPLEAVLNLVYLVRGADTLEDARHYANLAEI 205 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKI 109 + ++ V+ + I ++ + + + E Sbjct: 206 ELVRVADITMQTLRFHRQQTAAAPVNLEDTITAILRLYASRFPARRIKVEQYLRASHEPY 265 Query: 110 DLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L + ++L NL A+ ++P ++ S ++ G + Sbjct: 266 LLEGDIRQVLNNLIRNAYDAMPHGGTLTIRLHSATCLKTSIPGVRITIADTGTGFLPAMR 325 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + +++ R+ + V + L Sbjct: 326 GHLFEPFHTTKEVTGTGLGLWITKGIVDKHEGRIYMRSREGQGTVFTIWLP 376 >gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 599 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 68/235 (28%), Gaps = 25/235 (10%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + + + + L + + + H+I +P+ AI +L+E ++E Q I Sbjct: 363 LKETEQMLIKAKEKAEEADCLKSAFLANMSHEIRTPLNAIVGFSSMLEEAEDQEEKHQYI 422 Query: 54 RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + + L+ + + L Q+ + Sbjct: 423 TIIEDNNKLLLQLISDILDLSKIEAETFDIIPERVNAKQLCNDLFQAIQMKTSPQVELRL 482 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 ++LLN A G +TI Q NE FS++ G Sbjct: 483 KDNLPELTFTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQIDGNEVKFSVQDTGMGI- 540 Query: 160 FPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 PEK I V S I + + + ++ E Sbjct: 541 EPEKQEAIFTRFVKLNSFIPGTGLGLSICQSIVTQLGGKIGVESEPGKGSCFWFT 595 >gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae NTUH-K2044] gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 946 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + VQ + + S++ G Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCAGDYLQISVRDTGEGIPA 628 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + E + + Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687 >gi|167755722|ref|ZP_02427849.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402] gi|167704661|gb|EDS19240.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402] Length = 639 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + +L E++ MQL + Sbjct: 398 KEEAAIEAKNERLRANLLRSISHDLRTPLTSISGNASVLINNSGSLDENKKMQLYEVIYD 457 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 ++ + + T D + L ++IE+ I E + Sbjct: 458 DSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIEVKANDEF 517 Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++N+ A P+G ++I K+ + +G + Sbjct: 518 ILAKIDAGLIIQVIINIVDNAIKYTPKGSMISIETFKHKDFVEIQIADDGAGISDKD-KE 576 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + + H + S L Sbjct: 577 KLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFSFTLP 631 >gi|222054922|ref|YP_002537284.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221564211|gb|ACM20183.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 756 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 59/231 (25%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + + + + A + S HD+ P+ I + + LL+ + + Sbjct: 526 LLSEVQRSNQELQQFAYIAS---HDLQEPLRMISSYISLLERKYSGQLDEKAITYLSYVV 582 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------EQVIEDFIAVDKRVQVSWTGEK 108 + ++ + + + + + + V Sbjct: 583 DGAKRMQKLIEGLLNYSRISREARLVPVDTNESFSAAVANLEQRIRESGGDVTNDPLPIV 642 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLA---RFPEK 163 + + ++ NL G + + + E +FS+ NG + Sbjct: 643 LGDETQLVQLFQNLVGNGLKYRKPGSIPHVHLSARPAGLEWLFSVSDNGIGIESQHYDRV 702 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + R+ E +L Sbjct: 703 FQIFQRLHTKEEYPGTGIGLALCKKIVERHGGRIWVESRPGEGTTFYFILP 753 >gi|87199594|ref|YP_496851.1| multi-sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87135275|gb|ABD26017.1| multi-sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 515 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 64/243 (26%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAI----HNSLELLDEVGIEDEV 49 +A+ L + L AL + S + H+I P+ AI S LL + Sbjct: 264 LAEARLQELQNELVHVSRLTALGEMASALAHEINQPLSAIANYLRGSATLLARPDPPLDR 323 Query: 50 MQLIR--------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVD 97 + + F+ + + + ++ Sbjct: 324 VADAVERAAKEALRAGDIIRRLRDFVGRGETERTVESLPKLVEEASALALVGAKEHGIRV 383 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLK 152 + + + +++LNL A ++ G D+ + ++ Sbjct: 384 RYAFSPDVDLVLADKVQIQQVVLNLVRNAVDAMSAGEGDGRELLVSIDPDTDDAARVTVS 443 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +G + Q+ V + + + + R+ E Sbjct: 444 DSGPGI-SQDVADQLFQPFVTTKRTGMGVGLSISRTIVEAHGGRIWAERSALGGAQFCFT 502 Query: 213 LEK 215 L + Sbjct: 503 LPR 505 >gi|83950397|ref|ZP_00959130.1| ATP-binding region, ATPase-like:Histidine kinase, HAMPregion:Histidine kinase A, N-terminal [Roseovarius nubinhibens ISM] gi|83838296|gb|EAP77592.1| ATP-binding region, ATPase-like:Histidine kinase, HAMPregion:Histidine kinase A, N-terminal [Roseovarius nubinhibens ISM] Length = 655 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 + + + S L ++ + + + H+I +P+ I +++++ E + L+ Sbjct: 413 LEETFQQLVMSEKLASIGEITAGVAHEINNPVAVIQGNMDVVREVLGEAARPVATEIDLV 472 Query: 54 RLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--- 104 + + VD + D ++ IA + + Sbjct: 473 DRQVGRIQAIVGKLLQFARPNEFSDCAEMVDLRPVVEDSLVLVGHVIAKGRITVETEFGP 532 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160 E ++++NL M A ++ G + + ++ + ++ +G Sbjct: 533 APWVRIYPGELQQVIINLIMNAVQAMGGAGTLWLALSEAAREGRRGAQIVVRDSGPGIPE 592 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + D L Sbjct: 593 DKIAAVFDPFFSTKQAEGTGLGLSISQTLVQNAGGLISVRNHPDGGAEFRVWLP 646 >gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 912 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 21/230 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + L + + H+I +P+ AI +L E+E + I + + Sbjct: 541 AKNRAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSILATAEEEEEKSEYINIIENNNQ 598 Query: 62 IRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + V I + + + Sbjct: 599 LLLQLISDVLDIAKIEAGSLDFNYSSLDLNVLMNELESTALMRITSPDVCLEMIPDNDNC 658 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 I ++I++NL A +G + F + G EK + Sbjct: 659 WVITERNRLSQIIINLLNNAIKFTQKGKITFGYKLQKEK-IYFYVTDTGCGI-PAEKQDK 716 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + + L Sbjct: 717 IFERFIKLNNFAQGTGLGLSICKSIVDAMGGEIGVDSKVGNGSTFWFTLP 766 >gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 1007 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI EL+ E D + + + Sbjct: 630 LQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAGEEEKADYIQIINSNNE 689 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + L+ GSV+ D + + ++ Sbjct: 690 LLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCC 749 Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 A+I+ N A +G F +K G +K Sbjct: 750 RVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGG-VYFYVKDTGIGIADDKKGKV 808 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ E + + + A L Sbjct: 809 FQRFEKLDEFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLP 857 >gi|253568914|ref|ZP_04846324.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840933|gb|EES69014.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1354 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I +++ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYHKILGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + S E Sbjct: 875 ITELLDFRKQEQGHMKIKVSRHNLVNFLYENYLLFLEYASSKQINFKFNKQSDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V I +K G E Sbjct: 935 QKQMQKVVNNLLSNALKHTKAEDTISINVSQENKYVIIEIKDTGTGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D I + + + E L+ Sbjct: 995 QTERLDSLNTGAGTGIGLALTKGIIELHHGTIRVESEPGKGSRFIITLK 1043 >gi|218134761|ref|ZP_03463565.1| hypothetical protein BACPEC_02664 [Bacteroides pectinophilus ATCC 43243] gi|217990146|gb|EEC56157.1| hypothetical protein BACPEC_02664 [Bacteroides pectinophilus ATCC 43243] Length = 501 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + S L A L I HD+ +P+ I + L DE + Sbjct: 262 KEEAAILAESEQLRANLLRSISHDLRTPLTTIAGNASSLLSNGKSFDEQTRYQIYQDIYN 321 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 S + + G + + D + + + V E Sbjct: 322 DSVWLNNLVENLLYATRIEEGRMVLNTSTELLADVIDDAVRHVKQHSGEHSIFVESDDEY 381 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I ++ + ++++N+ A P G +TI N + ++ NGN +K Sbjct: 382 ILVTADARLIVQVIINIVDNAVRYTPPGSHITIRSCSENNMAVVYIEDNGNGISDEDKEH 441 Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + Y + + + + V L Sbjct: 442 VFDKFYSGTNRIADNRRSIGLGLYLCKAIIEAHGGTITVRDNNPAGAVFVFTLP 495 >gi|121997120|ref|YP_001001907.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588525|gb|ABM61105.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 639 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 60/238 (25%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + A + + I HD+ +P+ AI +LL ++ E + L + Sbjct: 254 ERRALEVDRQRAEADRNIFLAAISHDLRTPLNAIVGFTDLLARSELDTEQRHHVGLCRSA 313 Query: 60 AIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVS 103 + L + RL G D L + ++ Sbjct: 314 SQTLLGLIDTVLELSRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSLIWSLEPD 373 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 G ++L NL A G + + +F++ G + Sbjct: 374 MPGWVRGDPVRFGQVLYNLVSNALKFTETGSIRVDGARSTCGRLMFTVADTGPGIPEAD- 432 Query: 164 FTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214 +I D + + + L + + L Sbjct: 433 QGRIFDAFCQGGPVLARKEGSGLGLKICQELVRLMGGTIQLVSTPGVGTTFRFTVTLP 490 >gi|86144435|ref|ZP_01062767.1| hypothetical protein MED222_08498 [Vibrio sp. MED222] gi|85837334|gb|EAQ55446.1| hypothetical protein MED222_08498 [Vibrio sp. MED222] Length = 880 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 27/235 (11%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 +S+ ++ + + H+I +P+ I E+L + + +++ S+ L Sbjct: 378 KEDAISANKAKSVFLANMSHEIRTPLNGIIGMAEILSQSQLSANQQEVLEDIESSSHSLL 437 Query: 65 K--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + L+ +++ + ++ + + Sbjct: 438 VLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDINIDAQTPTQL 497 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164 ++L NL A +G T + + S+ G PEK Sbjct: 498 FFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKLECSVSDTGIGI-EPEKL 556 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I + + + L + + + L Sbjct: 557 ESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGGGSTFTFCL 611 >gi|116749295|ref|YP_845982.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698359|gb|ABK17547.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 869 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 55/228 (24%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRL 55 A+ + ++ A + S HD+ P+ I +LL + ++ + Sbjct: 635 AERLALINQELEEFAFVAS---HDLQEPLRKIKTYGDLLQKRCAPCLDDAGLGFLERMLR 691 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWTGEKIDL 111 S+ L + + + E V +++ Sbjct: 692 SADRMRRLLNDLLQYSRVAAKQEPFKEIQLGEVVREAANVFEQRAGGLIEIRKLPTIEAD 751 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDG 170 + ++ NL A ++ + + N F + + +I Sbjct: 752 ESQMLRLFQNLIGNALKFCGAASPQVKISAKCDHKGGCEIHVEDNGIGFEQHYAERIFKP 811 Query: 171 NVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E L Sbjct: 812 FQRLHGRDEYEGTGMGLAICRKIVERHGGNIRVESEPGKGSTFIIRLP 859 >gi|300932571|ref|ZP_07147827.1| two-component system sensor kinase TcsS5 [Corynebacterium resistens DSM 45100] Length = 381 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + K+ +S++D L + H++ +P+ ++ ++ELL + + + Sbjct: 132 LTKSFNDMMSALDDAQTKQRNLVADASHELKTPLTSMRTNIELLMQASKNKHTISDQDRN 191 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE------------DFIAVDKRVQVSW 104 + + + ++ V+ + V+ Sbjct: 192 DIERDVIAQIEEMSSLIGDLVELAREETHEVPLTIVDVTGILQGCIGRVQRRRPDVKFEL 251 Query: 105 TGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + LLNL A P G V I + E + +G Sbjct: 252 RPTTWTMEGDSFGLNRALLNLLDNAAKWSPSNGTVRIDMVPGDRELELRVSDSGPGIPVE 311 Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + ++ + V + + + + DD ++ L Sbjct: 312 ERERVFDRFYRSIASRSMPGSGLGLSIVKHMVERHGGSIRADESDDGGTMMVVRLP 367 >gi|317131254|ref|YP_004090568.1| multi-sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] gi|315469233|gb|ADU25837.1| multi-sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] Length = 460 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 22/224 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ AI +EL++ E + IR + I + Sbjct: 235 EQIRSEFVANASHELKTPLTAIKGFVELMEADIITEPDQIKSYLGRIRKETERMIELIND 294 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIED---------FIAVDKRVQVSWTGEKIDLSRE-RA 116 + ++ + VQV + + + Sbjct: 295 ILHLSELESVNADTGFTAVSMKLTAQRAAESVALSAHKRNVSVQVEGDVGTVRANPDRMM 354 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 ++ LNL A G V +++ F + G PE ++ + Sbjct: 355 QLALNLIDNAVKYNKPDGNVRVTIISKDGNVHFCVNDTGVGI-PPEARQRVFERFYRVDK 413 Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + K R+ E I ++ +L Sbjct: 414 GRSRRQGGTGLGLSIVKHIVGLYKGRIEIESIVGEGTSITVILP 457 >gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1253 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 55/239 (23%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + ++ + + H+I +P+ I EL + + + + ++ SA Sbjct: 562 LREAKNVAEEASRAKSIFLANMSHEIRTPMNGILGMTELALQTELSTTQRRYLTIAHNSA 621 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + I + + Sbjct: 622 KSLLVIINDVLDFSKVEAGEIRLEQTSFDPVETVENVMQSIAYSAYSKGIELMNHIDHRL 681 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160 + + +IL NL A G DS+ F + G Sbjct: 682 SHYLVGDPTRLQQILNNLLGNAVKFTDTGHVLLDVEVQGESDSEAHLHFRVIDTGIGIPA 741 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L H R+ E ++ Sbjct: 742 NKIDSIFESFSQVEASDRRKFGGTGLGLAITRKLVHLMNGRIWVESHMGEGSTFHFVIP 800 >gi|237734688|ref|ZP_04565169.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382016|gb|EEO32107.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 639 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + +L E++ MQL + Sbjct: 398 KEEAAIEAKNERLRANLLRSISHDLRTPLTSISGNASVLINNSGSLDENKKMQLYEVIYD 457 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 ++ + + T D + L ++IE+ I E + Sbjct: 458 DSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIEVKANDEF 517 Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++N+ A P+G ++I K+ + +G + Sbjct: 518 ILAKIDAGLIIQVIINIVDNAIKYTPKGSMISIETFKHKDFVEIQIADDGAGISDKD-KE 576 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + + H + S L Sbjct: 577 KLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFSFTLP 631 >gi|254523833|ref|ZP_05135888.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp. SKA14] gi|219721424|gb|EED39949.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp. SKA14] Length = 991 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 68/243 (27%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 ++ S + + + + H+I +P+ + LELL ++ + + Sbjct: 525 REDSEAARQSAEAANRAKSAFVATMSHEIRTPLNGVLGHLELLARSPLQPGQRERLDRIR 584 Query: 58 MSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQ 101 SA ++ + + G +D + +IE + + V Sbjct: 585 FSADALMRIISDVLDFSKIEAGQLDVEPVPFALRPLIEGVALLFAPDALRKGVRLYFTVD 644 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNL 157 + + + +IL NL A G + + +G Sbjct: 645 AAADQRCVGDAHRIRQILTNLVGNAVKFTESGRILLRAELHRAAGQGAQLRVQVIDSGIG 704 Query: 158 ARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 PE+ Q+ + + +A ++ E + + Sbjct: 705 M-SPEQTAQLFQPFQQADASVSRRYGGSGLGLALCLQIAQAMGGQVSVESTEGVGSSFTL 763 Query: 212 LLE 214 LL Sbjct: 764 LLP 766 >gi|193215252|ref|YP_001996451.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193088729|gb|ACF14004.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1333 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 66/241 (27%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMS 59 ++ ++ + L S I HD+ + + I SL+LL +D+ + + LS+ Sbjct: 948 ESHLLRAQRLESLGRLVSGIAHDLNNILSPILLSLQLLKRKATDDKAKGLIDTLELSAKR 1007 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLS 112 +K + I + Q +E + + S Sbjct: 1008 GGNLVKQVLSFAKGVECERLPIKIEHSVQEVEKILFETFPKTIDVDILYNKPLWYVHGDS 1067 Query: 113 RERAKILLNLFMVAHASLP-----------------RGGKVTISVQDSKNENIFSLKING 155 + ++LLNL + A ++ S+ G Sbjct: 1068 TQLHQVLLNLCVNARDAMQVKNGGALRITVSNAVVGEREAAIYPDAQPGRYVKVSVSDTG 1127 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE I + + + V ++ ++ + + L Sbjct: 1128 TGI-APEHLDSIYEPFFTTKELGQGTGLGLSTVFMIVKSHQGFITVYSELGKGTTFNVFL 1186 Query: 214 E 214 Sbjct: 1187 P 1187 >gi|158522710|ref|YP_001530580.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511536|gb|ABW68503.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1102 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/240 (8%), Positives = 63/240 (26%), Gaps = 27/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + ++ V +L + HD + +GAI EL D + + ++ I ++ Sbjct: 717 QEQLLQAQKLEAVGVLAGGVAHDFNNMLGAIIGFAELAIEATDSDSPQYKYLENILQAAR 776 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 + + V +++ L + + ++ + + Sbjct: 777 HSADLTGQLLAFARKQTIVPTVLDLNASVEGLLKILSRLMGENIELAWQPGPGHCTVRLD 836 Query: 114 --ERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156 + +++ NL + A ++ + T + + ++ NG Sbjct: 837 PSQLNQVVTNLCINARDAIVDVGNITLETDTLFFDQDYCDTHAEFTPGEYVMLAVSDNGV 896 Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +N + + + Sbjct: 897 GMDRQTMDHVFDPFFTTKKQGKGTGLGLATVYGIVKQNNGFISVYSEPGNGSTFRVYFPR 956 >gi|331086561|ref|ZP_08335639.1| hypothetical protein HMPREF0987_01942 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410394|gb|EGG89826.1| hypothetical protein HMPREF0987_01942 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 498 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------ 49 M K + N L L S I HD+ +PI AI +E + + + Sbjct: 248 MRKRLKDNAE-EKLAYDKESKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMEKYI 306 Query: 50 ---------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVD 97 M L+ T SV+ ++ + + Sbjct: 307 RTIYNKANEMDLLINELTLYSKIDTNRIPYNFTTLSVNEYFDDCAEDLKLELEQRDVEFG 366 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGN 156 V I + + +++ N+ + + + V+D + L+ NG Sbjct: 367 YFNYVEEDIRIIGDAEQLKRVINNIVTNSLKYMDKKRARINLRVKDVGDFIQVELEDNGK 426 Query: 157 LARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F + + I V + E+ ++ + V+ Sbjct: 427 GIAAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREGTGTVMYF 486 Query: 212 LLEK 215 ++ K Sbjct: 487 VIRK 490 >gi|325662838|ref|ZP_08151407.1| hypothetical protein HMPREF0490_02147 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470890|gb|EGC74119.1| hypothetical protein HMPREF0490_02147 [Lachnospiraceae bacterium 4_1_37FAA] Length = 498 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------ 49 M K + N L L S I HD+ +PI AI +E + + + Sbjct: 248 MRKRLKDNAE-EKLAYDKESKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMEKYI 306 Query: 50 ---------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVD 97 M L+ T SV+ ++ + + Sbjct: 307 RTIYNKANEMDLLINELTLYSKIDTNRIPYNFTTLSVNEYFDDCAEDLKLELEQRDVEFG 366 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGN 156 V I + + +++ N+ + + + V+D + L+ NG Sbjct: 367 YFNYVEEDIRIIGDAEQLKRVINNIVTNSLKYMDKKRARINLRVKDVGDFIQVELEDNGK 426 Query: 157 LARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F + + I V + E+ ++ + V+ Sbjct: 427 GIAAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREGTGTVMYF 486 Query: 212 LLEK 215 ++ K Sbjct: 487 VIRK 490 >gi|323694713|ref|ZP_08108873.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323501228|gb|EGB17130.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 895 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 23/231 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGIEDEV 49 + L + L I HD+ +P+ +I + +L +++ + Sbjct: 658 ALLAKNEQLRSNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLYEDIYDDSLW 717 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + +S T +D ++G K Q Sbjct: 718 LINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIKQEEDFLLVK 777 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +R ++++NL A P G +V I + N + ++ NG+ E I D Sbjct: 778 ADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI-SDESKEHIFD 836 Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + + E H V + L Sbjct: 837 MFYTAATKIADSRRSLGLGLALCKSIITAHGGTISVEDNVPHGAVFTFTLP 887 >gi|323484285|ref|ZP_08089653.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum WAL-14163] gi|323402437|gb|EGA94767.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum WAL-14163] Length = 661 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 23/231 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGIEDEV 49 + L + L I HD+ +P+ +I + +L +++ + Sbjct: 424 ALLAKNEQLRSNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLYEDIYDDSLW 483 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + +S T +D ++G K Q Sbjct: 484 LINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIKQEEDFLLVK 543 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +R ++++NL A P G +V I + N + ++ NG+ E I D Sbjct: 544 ADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI-SDESKEHIFD 602 Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + + + E H V + L Sbjct: 603 MFYTAATKIADSRRSLGLGLALCKSIITAHGGTISVEDNVPHGAVFTFTLP 653 >gi|297195413|ref|ZP_06912811.1| two-component sensor [Streptomyces pristinaespiralis ATCC 25486] gi|297152774|gb|EDY63125.2| two-component sensor [Streptomyces pristinaespiralis ATCC 25486] Length = 391 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 53/231 (22%), Gaps = 22/231 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMS 59 S A L + + H++ SP+ ++ L +++ + + Sbjct: 153 EARRRSERSNAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANR 212 Query: 60 AIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + VD + + R +V TG DL Sbjct: 213 VTRLIAELLDISRIDSGRLEVRRQPVDLAAAVRRHVEAHVAAGQTPDRFRVDVTGPLPDL 272 Query: 112 SRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L NL A + S ++ G Sbjct: 273 WADPDKVDQVLGNLLENAVRHGEGTVTIDIAPSPSAGGQSGTGTAVTVSDEGPGIPEESM 332 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + +L Sbjct: 333 GRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPGGGAQFRFILP 383 >gi|283779376|ref|YP_003370131.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula staleyi DSM 6068] gi|283437829|gb|ADB16271.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula staleyi DSM 6068] Length = 537 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 MA+ + + + + + H+ + + I ELL+ ++L+R + Sbjct: 300 MAQRRALEAERLAAIGQMSAGLAHEARNALQRIQAFCELLELEVESNASAVELVRRIQNA 359 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEK 108 + GY V+ +V + + + + + Sbjct: 360 QGHMHRLFDEVRGYAAPVNLDCATCHPSEVWREAWELLQPQRSGRSAQLIEAPEGSATPW 419 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKF 164 ++ NL + A+ +VTIS + S+ NG E+ Sbjct: 420 FVDRFRMVQVFRNLLENSLAACEDPVQVTISCTDTLWHDEPALRISVLDNGPGL-SAEQK 478 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 +I + + + L + + E + + Sbjct: 479 KRIFEPFYTTKTRGTGLGMAIATRLVEAHGGVIEVENRPLGSGAEIVVTVP 529 >gi|209964224|ref|YP_002297139.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW] gi|209957690|gb|ACI98326.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW] Length = 831 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 68/248 (27%), Gaps = 34/248 (13%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQ 51 M + + S + A+ L + HD + + A+ +LL + Sbjct: 439 MTEQKSLESQIVQSQKMQAIGQLAGGVAHDFNNLLTAMIGFCDLLLLRHKPGDQSFSDIM 498 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108 I+ ++ A ++ + ++ + D+ + + + + Sbjct: 499 QIKQNANRAANLVRQLLAFSRQQTLQPRVLSVTDVLAELSNLLRRLIGENIELRMLHGRD 558 Query: 109 ----IDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIF 149 + ++++NL + A ++P + + + Sbjct: 559 LGLVKVDQGQLEQVIINLAVNARDAMPGGGRLSIVTSNFSATGPVRRETEEMPPGDYVVI 618 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + G E +I D + + V + + + E D Sbjct: 619 EVADTGVGI-PRENLQRIFDPFFSTKEVGSGTGLGLSTVYGIVRQTGGFIFVESAPDQGA 677 Query: 208 VLSALLEK 215 S L + Sbjct: 678 KFSIFLPR 685 >gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 612 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 24/225 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66 +L + S + H+ +P+ +I+ S+ LL + + E++Q+I+ S + Sbjct: 386 ELKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDINDDQKELLQVIQEDSERLNRLVNE 445 Query: 67 M---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + ++ + I ++ + + +++++ + + + K Sbjct: 446 LLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQAEEKNIQIKINVSDNLPKVRADHTK 505 Query: 118 ILLNLFM---VAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQI----V 168 I + A P G + I + + N+ + S+ NG+ + Sbjct: 506 IGWVVSNLVGNALRYTPTDGTGVINIETKQTANKIVTSVTDNGSGISEEYQKIIFDKFLQ 565 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 EST + + + + + L Sbjct: 566 VNGGESTQGGAGLGLAISREIVRAHGGDMWVDSELGEGSTFYFTL 610 >gi|270307527|ref|YP_003329585.1| histidine kinase [Dehalococcoides sp. VS] gi|270153419|gb|ACZ61257.1| histidine kinase [Dehalococcoides sp. VS] Length = 1084 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 61/233 (26%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53 + + AL+ S + H++ +P+ I S E+L E D + + Sbjct: 851 RSALNEQIRRRK--ALINSLV-HELRTPLTPIIGSSEILLEKLEGDARLYRVAKNISSAA 907 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WT 105 + + + G + + + ++D++ ++ Sbjct: 908 ESMNQRIRDLVDSAKSEIGMLKIEKRPVDIQEFMSNLQDYLGTCACIKNQTFKFEISPDP 967 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++NL + P G ++ I+ S+K G Sbjct: 968 QNIAIDEDRFRQVMINLINNSMKFSPSGSQIEITAGPENERWHVSVKDQGCGIEQKYLGK 1027 Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + R+ + L Sbjct: 1028 IFKPYFCINSANRDSQGMGLGLYIANQIIKLHGGRIWAKSEFGQGSEFIIDLP 1080 >gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 785 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 63/237 (26%), Gaps = 27/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + L+LL + +++ ++L ++ SA Sbjct: 397 AKENAEAANRAK--SQFLANMSHEIRTPMNGVLGMLDLLMDSRLDENQLRLASMAHGSAD 454 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + +A + + + I + ++ S Sbjct: 455 KLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLICQIDDSVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161 ++L+NL A G + + F ++ G Sbjct: 515 NTVRGDGVRLRQVLINLVGNAVKFTENGQIFLGVSLMETTAENTQLRFEVRDTGTGIPLD 574 Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + D ++ + + L + + L Sbjct: 575 AQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVRSEPGTGSLFWFTL 631 >gi|323700382|ref|ZP_08112294.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323460314|gb|EGB16179.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 471 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 64/232 (27%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 + L + + A + + H+I +P+ ++ +++L+ + + + S Sbjct: 237 MAARLRREERMRADFVAMLSHEIRTPLTSVREAVDLVGSGTFGEVNEKQKRFLDIAGQES 296 Query: 58 MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTG 106 VD + + + +V Sbjct: 297 ERLSDLLTRLLSVSRMEAEELHLNPERVDVAGLVESTVERLVPTARAASVTLESEVEPGL 356 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L NL RGG V + + S E +FS+ +G E+ Sbjct: 357 AVRADPAHVRQVLTNLAGNGVKFSERGGTVRLIAERSGREVLFSVADDGPGIPVDEQERI 416 Query: 167 I----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +ID + + + R+ E L Sbjct: 417 FLKYYREPGVRDSIDGAGLGLAIARRIVLAHDGRIWVESEPGRGATFRFTLP 468 >gi|310822435|ref|YP_003954793.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309395507|gb|ADO72966.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 647 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 76/246 (30%), Gaps = 34/246 (13%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43 K + L + D +V+L L + + H+I +P+ + ++L +D+ Sbjct: 374 RKAVQTRLQAADRMVSLGTLAAGVAHEINNPLSFMLSNLRFIDDELRTLMEEGQSLSGER 433 Query: 44 -GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 E +Q + ++ ++ + + + + + + R + Sbjct: 434 GKEVWEALQETLVGGNRVNDIVRDLKTFARSNEERQGQVNVHAVLDLCANIARSELRHRA 493 Query: 103 SWTGEKIDLS------RERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFS 150 + + ++ LNL + A ++P + QD++ + + Sbjct: 494 RLVKDYGTIPLVLANESRLGQVFLNLIVNAAQAIPEGSDVKTNEVRITTTQDAQGWAVVA 553 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 +K +G PE ++ D + + + R+ E Sbjct: 554 VKDSGVGI-PPENLARLFDPFFTTKPAGVGTGLGLSICHGIIVALGGRITVESEPGKGST 612 Query: 209 LSALLE 214 L Sbjct: 613 FRVFLP 618 >gi|228902139|ref|ZP_04066303.1| hypothetical protein bthur0014_33180 [Bacillus thuringiensis IBL 4222] gi|228857565|gb|EEN02061.1| hypothetical protein bthur0014_33180 [Bacillus thuringiensis IBL 4222] Length = 490 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 255 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 314 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 315 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 374 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 375 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 433 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 434 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 480 >gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ] gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 1193 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 60/247 (24%), Gaps = 35/247 (14%) Query: 2 AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K + + + A + I H++ +P+ I LL + DE + Sbjct: 790 QKRVEQEIRAAKEAAESANRAKTQFLANISHEVRTPLNGIMGMSHLLHMTPLADEQQDYL 849 Query: 54 RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQ 101 R SA DI ++ + +Q Sbjct: 850 RHLDDSAQSLLSVINDLLDLTRIESGGFGTEQADFQLDQLARDILRIHQPVAQRKGVLLQ 909 Query: 102 VSWTGEKID----LSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKI 153 + + ++L NL A +G I V F++ Sbjct: 910 LELADGMPGLLRGVPLRLKQVLHNLVGNAVKFTDQGRVVLSISPIIVPGQSLRVRFAVCD 969 Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 +G PE +I D + + L + E Sbjct: 970 SGIGM-EPETIKRIFDPFSQADESISRRYGGTGLGLTICRRLTELMGGTIEVESTPGQGS 1028 Query: 208 VLSALLE 214 + +L Sbjct: 1029 CFTVILP 1035 >gi|115378970|ref|ZP_01466102.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1] gi|115364009|gb|EAU63112.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1] Length = 590 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 76/246 (30%), Gaps = 34/246 (13%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43 K + L + D +V+L L + + H+I +P+ + ++L +D+ Sbjct: 317 RKAVQTRLQAADRMVSLGTLAAGVAHEINNPLSFMLSNLRFIDDELRTLMEEGQSLSGER 376 Query: 44 -GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 E +Q + ++ ++ + + + + + + R + Sbjct: 377 GKEVWEALQETLVGGNRVNDIVRDLKTFARSNEERQGQVNVHAVLDLCANIARSELRHRA 436 Query: 103 SWTGEKIDLS------RERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFS 150 + + ++ LNL + A ++P + QD++ + + Sbjct: 437 RLVKDYGTIPLVLANESRLGQVFLNLIVNAAQAIPEGSDVKTNEVRITTTQDAQGWAVVA 496 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 +K +G PE ++ D + + + R+ E Sbjct: 497 VKDSGVGI-PPENLARLFDPFFTTKPAGVGTGLGLSICHGIIVALGGRITVESEPGKGST 555 Query: 209 LSALLE 214 L Sbjct: 556 FRVFLP 561 >gi|39996543|ref|NP_952494.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983424|gb|AAR34817.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298505559|gb|ADI84282.1| sensor histidine kinase response regulator, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 654 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 29/233 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLK 65 M+ + L + HD + + AI LL + I ++ A +K Sbjct: 282 QKMEAIGTLAGGVAHDFNNILTAIVGFGTLLQRSLNKDNPYQIYVDQILNAADRATTLVK 341 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKI 118 + L I Q IE +A V + S + +I Sbjct: 342 RLLAFGRKQVITPLPTDLNGIIQSIEKLLARLVSEDVEFKVSLFNEPLVCHVDSGQIDQI 401 Query: 119 LLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L+NL A ++P ++ + ++ G E Sbjct: 402 LMNLVTNARDAMPSGGTLTLTTDATVLNENSFSSLEQCRPGRYAVLTVSDTGLGM-DQET 460 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + +++ + + L Sbjct: 461 KERIFDPFFTTKEVGKGTGLGLSMVYGIVRQHEGFVTVDSEPGAGTTFRIYLP 513 >gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 814 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 27/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSM 58 + + A L I H+I +PI +I LL + + +E ++ + + S+ Sbjct: 309 RQEAEQARDAEK--AFLA-NISHEIRNPINSIVGMTNLLYDTYLSEEQLEYVNTLKYSAD 365 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 + + + + ++S + Sbjct: 366 LLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCKTFEFRLSQRPIQFQCEVSPSVP 425 Query: 116 ----------AKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARF-- 160 +IL+NL A G D + F +K G Sbjct: 426 QRFRSDSTFINQILINLMNNAFKFTEEGTISCLAEAKFIDQQQWIEFIVKDTGIGIPPDR 485 Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + D + L + + + LL Sbjct: 486 LPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGGNIKVQSTPGVGTTFNILLP 542 >gi|330826615|ref|YP_004389918.1| integral membrane sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] gi|329311987|gb|AEB86402.1| integral membrane sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] Length = 585 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 68/237 (28%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ S+ + + + H++ +P+ +I EL++ + V + L A Sbjct: 333 LARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQGA 392 Query: 61 IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSW 104 + + V + + ++ ++ + ++ R+ Sbjct: 393 EHLNALLTEILDLAKVEAGSMPTHPEPVALPVLVHEVAELFRVSAVVKSLQLEARLLPEA 452 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +IL NL A + ++ + + +F + G PE Sbjct: 453 EQPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTDTGPGI-APEL 511 Query: 164 FTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + LA L + + L Sbjct: 512 HEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSSPGEGARFTLALP 568 >gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1302 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSM 58 + + + L + I H+I +P+ I LE L + +++I ++ Sbjct: 792 LNERKETEVREARLR--FFTMIAHEIRTPVTLIIGPLESLRRKAAGRLSDDLEMIDRNAR 849 Query: 59 SAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + V E F ++ +++ + Sbjct: 850 RLLALVNQLLDFNKVQQAGGQARFRLQNIARLMAGVAERFAPAYRQRGIAFRTDYPPEDF 909 Query: 114 ER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 KI+ NL A ++ +V ++ NG ++ Sbjct: 910 VAVVEPEGLTKIISNLLTNAGKYTKDSIRLACTVDADGRHFRIEVEDNGIGIGKADREKI 969 Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L + + + + + +L Sbjct: 970 FNPFFQARDNKPGTGIGLSIVKTLVDLHGGEVSVDSEEGRGARFTVVLP 1018 >gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP07] gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP07] Length = 429 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57 ++I + ++ + + + H++ +P+ +I +E L + +++I S Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + L L+ + V ++ + + E + + Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ LNL A G V + V + + + + NG E + Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215 I + + + + + + L+K Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425 >gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP08] gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP08] Length = 441 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57 ++I + ++ + + + H++ +P+ +I +E L + +++I S Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + L L+ + V ++ + + E + + Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ LNL A G V + V + + + + NG E + Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215 I + + + + + + L+K Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425 >gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 2624 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 71/246 (28%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 +N+ + ++ + + H++ +P+ + + ELL + ++ + +++ +SA Sbjct: 1928 KRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDLDKDQLEMADSIRVSAD 1987 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105 + L + ++ + L I ED + + ++ Sbjct: 1988 LLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKNVKIVQDIN 2047 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLA 158 + + + ++L NL + G F ++ G Sbjct: 2048 LPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHAMLTFWVRDTGIGI 2107 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--L 209 + ++ + L K ++ E ++ Sbjct: 2108 PPQQL-AKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEENVGTTAWF 2166 Query: 210 SALLEK 215 + EK Sbjct: 2167 TVTFEK 2172 >gi|254818465|ref|ZP_05223466.1| PhoR [Mycobacterium intracellulare ATCC 13950] Length = 472 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +P+ I EL + D M L R+ S ++ + L L V + Sbjct: 249 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 308 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------------RAKILLNLFMVAHAS 129 ++ + AV + + ++L NL A Sbjct: 309 HNRVDLLALASDAVHDAQAIDPGRTITMKVLDGPGTPEVLGDEARIRQVLSNLIANALQH 368 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V ++ + + G + F + + + Sbjct: 369 TPESADVTVRVGTDGDDAVLEVADKGPGMSEQDASRVFERFYRTDSSRARASGGTGLGLS 428 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 429 IVESLVRAHGGVVSVTTAPGEGCCFRVTLPR 459 >gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 1029 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + L + + H+I +P+ AI +L E E + I + + Sbjct: 659 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 716 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + ++ D L + + + + V Sbjct: 717 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGVQLIAHKGLPSC 776 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + R +LN + + G +T + E F +K G + + Sbjct: 777 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYELCGRELYFYVKDTGCGIPADKVNSIF 836 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + R+ E + + Sbjct: 837 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 884 >gi|255656614|ref|ZP_05402023.1| two-component sensor histidine kinase [Clostridium difficile QCD-23m63] Length = 758 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57 ++I + ++ + + + H++ +P+ +I +E L + +++I S Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + L L+ + V ++ + + E + + Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ LNL A G V + V + + + + NG E + Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215 I + + + + + + L+K Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425 >gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC 43255] gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 441 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57 ++I + ++ + + + H++ +P+ +I +E L + +++I S Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + L L+ + V ++ + + E + + Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ LNL A G V + V + + + + NG E + Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215 I + + + + + + L+K Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425 >gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630] gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile QCD-66c26] gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP 107932] gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile QCD-63q42] gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile QCD-76w55] gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile QCD-97b34] gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile QCD-37x79] gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile R20291] gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile] gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile R20291] Length = 429 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57 ++I + ++ + + + H++ +P+ +I +E L + +++I S Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + L L+ + V ++ + + E + + Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ LNL A G V + V + + + + NG E + Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215 I + + + + + + L+K Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425 >gi|307825996|ref|ZP_07656210.1| multi-sensor signal transduction multi-kinase [Methylobacter tundripaludum SV96] gi|307732971|gb|EFO03834.1| multi-sensor signal transduction multi-kinase [Methylobacter tundripaludum SV96] Length = 1710 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + +N L L AL L + H+I +P+ I N +E + +++ +++ + Sbjct: 1479 LQENQEHMLQMEKLSALGTLVGGVAHEINNPLMGIMNFVEFAADRSTDEKSKEVLDQALQ 1538 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS 112 K + + + G + +VI+ + V + Sbjct: 1539 QIHRIKKIVSNMLLFIHTRSVPSGNCQVAEVIKQTQLLLEGELSKNGIAVEVDAANDLPA 1598 Query: 113 RER-----AKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +IL+NL + A +L R ++ I V+ + S+ NG + + Sbjct: 1599 IRCSADSLQQILVNLIINARDALADSRQPQIKIIVRPMEEMLELSVTDNGPGI-PQDIQS 1657 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + L + + E I H + Sbjct: 1658 KIFDPFFTTKPPGKGTGLGLSVIRRLVQDVGGNIQVESIYGHGCCMRLRFP 1708 >gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 1045 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + L + + H+I +P+ AI +L E E + I + + Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 732 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + ++ D L + + + + + Sbjct: 733 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIAHKGLPSC 792 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + R +LN + + G +T + E F +K G + + Sbjct: 793 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYELCGRELYFYVKDTGCGIPADKVNSIF 852 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + R+ E + + Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900 >gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] Length = 1045 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + L + + H+I +P+ AI +L E E + I + + Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 732 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + ++ D L + + + + + Sbjct: 733 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIAHKGLPSC 792 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + R +LN + + G +T + E F +K G + + Sbjct: 793 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYELCGRELYFYVKDTGCGIPADKVNSIF 852 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + R+ E + + Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900 >gi|256830426|ref|YP_003159154.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579602|gb|ACU90738.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 602 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 64/221 (28%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ +I E L + ++ ++R ++ + + ++L+ Sbjct: 374 FVANVSHELRTPLTSIKGYAETLVGIDKYDPEQTRSFLEVILRNANHMNTMLDELLQLSR 433 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDLSRERAKILLNL 122 G + + + + + + + ++ N+ Sbjct: 434 LEHGKLRLDLVSVEPASAVYSAWKSCHPLSKNIEFTSELDASTPAVRANFEQLVQVFRNV 493 Query: 123 FMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176 F A +P V S E + ++ NG + F + + S+I Sbjct: 494 FENAIKYVPEETAVIRVHGHTSGPELVVFIEDNGPGIPAEDQTRIFERFYRVEKDRNSSI 553 Query: 177 DSHDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214 + + + R+ + L Sbjct: 554 GGTGLGLAISRHIMANHGGRITVQSPVPETGIGSRFIITLP 594 >gi|196042334|ref|ZP_03109608.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196047736|ref|ZP_03114936.1| putative sensor histidine kinase [Bacillus cereus 03BB108] gi|196021426|gb|EDX60133.1| putative sensor histidine kinase [Bacillus cereus 03BB108] gi|196026828|gb|EDX65461.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 337 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + K S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 95 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 154 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + I + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E I + K Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 331 >gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 342 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 56/221 (25%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +P+ +I ++ L +++I+ + ++ + Sbjct: 106 FVSTVSHELRTPLTSIKGFVDTLLRSGSQLSEAQHRRFLRIIKNQADRLTRLVEDILTVS 165 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----------IDLSRERAKILLN 121 + + D + + + + + +IL N Sbjct: 166 RIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQRMRRELPGALPEVWADQDRLEQILTN 225 Query: 122 LFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173 L A G V +S + +N +++ G + Sbjct: 226 LIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIPEENLDQIFNRFSRIDSPLT 285 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y L + E + L Sbjct: 286 REREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLP 326 >gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] Length = 911 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 61/239 (25%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A + + + + + H+I +P+ I LL + + + + Sbjct: 252 LAHRRALDANRAK--SEFLANMSHEIRTPLNGIIGFCRLLHRSELNARQREWLDHVRRAC 309 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSW 104 + + G ++ D+ ++++ + + V Sbjct: 310 DNLLMLVNDVLDFSKIEAGRLELEHRPLDMVALVDEVLGLQAPQAQQKNLQLLGLVYDDV 369 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160 GE ++L NL A RG + ++ S+ G Sbjct: 370 PGELFGDPLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDTSHNQTTLNVSVSDTGIGLSQ 429 Query: 161 PEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + L + + + L Sbjct: 430 ACQRQLFDAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDSESGQGSTFFFTLP 488 >gi|296137724|ref|YP_003644968.1| sensory box histidine kinase/response regulator [Salinibacter ruber M8] gi|295981893|emb|CBH22851.1| sensory box histidine kinase/response regulator [Salinibacter ruber M8] Length = 1501 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/258 (12%), Positives = 68/258 (26%), Gaps = 46/258 (17%) Query: 2 AKNICFNLSSMD------LVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L L A + + H++ +P+ A+ +LL + ++ + Sbjct: 926 RKQTEMKLRDAKEQAEASLAAKERFLATMSHEVRTPLNAVLGMAQLLARTDLTEDQRSYL 985 Query: 54 RLSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKR 99 + S L + + V + D+ + +D R Sbjct: 986 QSIRFSGNTLLTLLDTVLDFAKLEAGEVDLEQVAFDPVRLAHHVRDMLRSKAKESDLDFR 1045 Query: 100 VQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----------KNE 146 ++ + + +IL NL A G V + Sbjct: 1046 IEADPQLPTSVVGDAARVGQILTNLGSNALKFTDDGSVVICVEEGPASAAPAEDSEAPTW 1105 Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTI----------DSHDIQFYYVILLAHENKIR 196 F ++ G PE+ +I ++ + + V L + Sbjct: 1106 ITFRVEDTGIGI-PPEQRDRIFGHFNQADTDTGETRKETREGTGLGLAIVQTLVDQMGGT 1164 Query: 197 LLPEIIDDHNVVLSALLE 214 + E V + L Sbjct: 1165 IDLESTPGEGSVFTVRLP 1182 >gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 1340 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSM 58 + + + L + I H+I +P+ I LE L + +++I ++ Sbjct: 830 LNERKETEVREARLR--FFTMIAHEIRTPVTLIIGPLESLRRKAAGRLSDDLEMIDRNAR 887 Query: 59 SAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + V E F ++ +++ + Sbjct: 888 RLLALVNQLLDFNKVQQAGGQARFRLQNIARLMAGVAERFAPAYRQRGIAFRTDYPPEDF 947 Query: 114 ER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 KI+ NL A ++ +V ++ NG ++ Sbjct: 948 VAVVEPEGLTKIISNLLTNAGKYTKDSIRLACTVDADGRHFRIEVEDNGIGIGKADREKI 1007 Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L + + + + + +L Sbjct: 1008 FNPFFQARDNKPGTGIGLSIVKTLVDLHGGEVSVDSEEGRGARFTVVLP 1056 >gi|227489424|ref|ZP_03919740.1| sensory transduction histidine kinase [Corynebacterium glucuronolyticum ATCC 51867] gi|227090602|gb|EEI25914.1| sensory transduction histidine kinase [Corynebacterium glucuronolyticum ATCC 51867] Length = 461 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 16/229 (6%), Positives = 54/229 (23%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 + ++ + + H++ +P+ ++ EL + + ++ + Sbjct: 228 LQDSLQKSHRQEKEMRQFVGDASHELRTPLTSVKGFAELYKTGATDDADWVLSKIQEEAG 287 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDL 111 + + L +D + + + + S + Sbjct: 288 RMTTLVEDLLALTRAEGNPLDKQKVDLMEVIESLGTSLRVAYPDREITIGESEPLYVLAD 347 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ NL + V++ + I ++ NG + Sbjct: 348 EEKIRRVFTNLMVNGLVHGG--KDVSVLPTADDTDVIIDVRDNGQGMAPEDLEHIFDRFY 405 Query: 172 VE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + L + L + L + Sbjct: 406 RTDESRSRQSGGSGLGLSIAKSLVEAHGGSLSVTSTKGVGSTFTVRLPR 454 >gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 648 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 252 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPTYKGLSVI 311 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M L E E + + Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHV 371 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ NL A P G++ +S++ + S+ +G+ Sbjct: 372 PPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 431 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 432 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 490 >gi|75909212|ref|YP_323508.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702937|gb|ABA22613.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 498 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIR 54 + K N +L +L S + H+ +P+ I ++EL++ G + ++ I+ Sbjct: 263 LQKERELN----NLKSLFISTVSHEFRNPLSVIQTAIELIELHGQNLTETKKNTYIKRIK 318 Query: 55 LSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + S + ++ + ++ ++ + + + + Sbjct: 319 GAVQSMKLLMEDVLFMGKSDAAKLDCNPVLLNLKGFCQELIEEFTTVEISGHEIIFTCSD 378 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR-- 159 E + + I +NL A P+ + +K IF ++ G Sbjct: 379 ETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTFDQTKGVAIFRIQDEGIGIPVA 438 Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + +I + V +K + + + L Sbjct: 439 DQTHLFESFYRASNSQSIQGTGLGLVIVKRCVEAHKGEIAFNSQEGVGTTFTITLP 494 >gi|302038351|ref|YP_003798673.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606415|emb|CBK42748.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 809 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 73/244 (29%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVM 50 K++ L + + AL + I HD + + I++ ELL + ++ Sbjct: 419 RKDLERQLRQAQKMEALGRMAGGIAHDFNNLLTIINSWAELLTGEPGQTTRTQRGMAQIR 478 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++ L F R ++ + DI ++++ I D ++ ++ Sbjct: 479 EAGNKATALTRQLLAFTRHQIVERQPLNLNDRVTDIVELMKRVIGEDIQLALTLDPALGR 538 Query: 111 LSRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 + + +I + A ++P + + +++ Sbjct: 539 VKADPGQIEQVVMNLVVNARDAMPHGGRLDVETKSVSIAHSDPLWPNPLTPGPYVTLAVR 598 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G + + + + + V + ++ + E H + Sbjct: 599 DTGCGM-DADTVAHVFEPFFTTKELGKGTGLGLSTVYGIVRQSGGTVGIESEPGHGTTFT 657 Query: 211 ALLE 214 L Sbjct: 658 IYLP 661 >gi|300087186|ref|YP_003757708.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526919|gb|ADJ25387.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 648 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 67/233 (28%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + S L A+ + + I H+I +P+ + ELL E E + +I Sbjct: 272 LRDKAEM---SSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLERKDLPDDMKEELTIIN 328 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S +K M V L V+ R Sbjct: 329 AGSQRVKEIVKRMLTFARQHELVQSSASIAELLDNTLEMRAYVLRTSNIEVVREYDPDLP 388 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ LN+ + A ++ + ++T+ + +++ +G + Sbjct: 389 WMTADAGQLQQVFLNIIVNAEYAMKKVHGRGRLTVGTERVDERVRVTIEDDGGGI-PTDA 447 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + + + + E+ + + L Sbjct: 448 RSRLFQPFFTTKEPGEGTGLGLSLSRGIVAEHGGTIDENGLPGVGARFIIDLP 500 >gi|269104319|ref|ZP_06157015.1| osmosensitive K(+) channel histidine kinase KdpD [Photobacterium damselae subsp. damselae CIP 102761] gi|268160959|gb|EEZ39456.1| osmosensitive K(+) channel histidine kinase KdpD [Photobacterium damselae subsp. damselae CIP 102761] Length = 488 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 21/231 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57 M K + L + + HD+ +P+G+I S L++ +L++ + Sbjct: 251 MVKEAN---QMEQMRNTLLAAVSHDLKTPLGSIIGSATTLNDPNIHLPPQTKQELLQSIA 307 Query: 58 MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + V+ +G + +E + V T Sbjct: 308 EEGYSLNRSLTKLLDISRYSIKTLVPKCDWVEPEEVIGSAIKRVELLLKQHPISLVGDTM 367 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ NL A + IS +FS+ G PE + Sbjct: 368 LVSLDYTLIEQVIANLIENAAKYSSGNSPIDISTCYLDGAFVFSIADRGCGV-APEDTQR 426 Query: 167 IVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + S + + L+ +K + + + + + Sbjct: 427 IFERFYRSEHVKVKGTGLGLAICKLIVSAHKGTISVASREGGGSIFTVQIP 477 >gi|224540763|ref|ZP_03681302.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus DSM 14838] gi|224517630|gb|EEF86735.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus DSM 14838] Length = 630 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 60/229 (26%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK + L + + H+I +P+ AI +L E E + IR+ + Sbjct: 397 LAKERAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSILAETADTPESHEYIRIIEDNN 454 Query: 61 IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + L+ + VD + +E + + + +K Sbjct: 455 CLLLQLINDILDLSRIEAGLLDFCYTEVDINGCIRKLEDAFHFRMPANVECIAEFGMKKC 514 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + E+ ++L N A G F ++ G ++ Sbjct: 515 HVYTEKNRLGQVLGNYLSNAIKYTTEGSITVGYYPPKDGNMRFYVRDTGCGISPEKQKAI 574 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++A + + + Sbjct: 575 FQRFVKLDNFKQGTGLGLSICQMIAEKMHATVGVSSEIGKGSEFWIEIP 623 >gi|148239894|ref|YP_001225281.1| adaptive-response sensory kinase [Synechococcus sp. WH 7803] gi|147848433|emb|CAK23984.1| Adaptive-response sensory-kinase SasA [Synechococcus sp. WH 7803] Length = 380 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 60/231 (25%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54 + + + + L + H++ +P+ A +L+ I+ +L Sbjct: 129 LRQENETLIDRLQSQERLLRMVAHELRTPLTAATLALQSQQRGQIDLNRFRDVLKRRLEE 188 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGE---K 108 ++ +S + + I ++ + + D + + Sbjct: 189 IALLSKDLLEVGSTRWEALFNPQRLDLASVAAEAILELEKLWFGRDVTIHTDIPADLPLA 248 Query: 109 IDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A G + + S+ +G E+ Sbjct: 249 YADQRRMRQVLLNLLENALKYTQDGGTIAVSMLHRTNQWIQVSVSDSGPGIPEQEQQRIF 308 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + R+ + + Sbjct: 309 LDRVRLPQTSGGTSGFGVGLSVCRRIVEVHGGRIWVISEPGKGACFTFTVP 359 >gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 908 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53 MA+ + +L L + + H+I +P+ AI EL+ ++ ++E M +I Sbjct: 532 MAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPAEKEEYMSII 591 Query: 54 RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + ++ + + + L + Q V+ ++ Sbjct: 592 QSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKITNPDVEFQMDN 651 Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 S I ++ +N A G + + + ++ +G Sbjct: 652 SGPDCWIFLDRSRLKQVWMNYLTNAVKCTKS-GYIKMGYSIEREGIRIYVEDSGVGI-PE 709 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + A + Sbjct: 710 ELQERVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTFWAWIP 764 >gi|189347233|ref|YP_001943762.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] gi|189341380|gb|ACD90783.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] Length = 608 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRL 55 +++ ++L + + + H + +P+ A+ S+ LL E + Sbjct: 372 RDVTQVHEQLELKRSVIATVSHQLRTPLTALRMSIHLLLEEHTGHLNGQQADLLLAAREE 431 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S I + + +G +G D+ V + T + Sbjct: 432 SERLVHILDDLLDINRIESGKAHLDLSALSPCRIGAEGMEPFLLPCRDQGVSIRNTIPET 491 Query: 110 DLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + NL A GG +T++ + FS++ G E Sbjct: 492 LPDIVADRESLMHVFANLLSNALRFTSAGGSITLNACEDDGNIRFSIEDTGTGI-DAEHM 550 Query: 165 TQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V + + + E S L Sbjct: 551 EHLFEPFYRVPGQREKNGIGLGLSIVKEIVEAHGGSVDAESTPGKGSRFSFNLP 604 >gi|326693101|ref|ZP_08230106.1| histidine protein kinase; sensor protein [Leuconostoc argentinum KCTC 3773] Length = 623 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 64/241 (26%), Gaps = 33/241 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 + S + S + H++ +P+ ++ + ++ L + + + +++ + Sbjct: 369 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAINDPEMAQNFLDVVQDETQ 426 Query: 59 SAIIRLKFMRL---------------------AFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 I + + D +I + Sbjct: 427 RMIRMINDLLELSRLDQGTMDVKLEVVNLNSLFNFVLNRFDMIIENDAKNADTPNKSYNI 486 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 KR + + ++L N+ A P GG +T + +K I S+ G Sbjct: 487 KREFTNEDVWAEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 546 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + +++ Sbjct: 547 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 606 Query: 213 L 213 L Sbjct: 607 L 607 >gi|255533794|ref|YP_003094166.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346778|gb|ACU06104.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 1337 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 18/232 (7%), Positives = 58/232 (25%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSS 57 K M+ S H++ +PI +I L+L + +++ I ++ Sbjct: 1101 TKTNELQKELMEKKDEFMSIASHELKTPITSIKGFLQLTKRAAAKGTADRDMLIYIDKAN 1160 Query: 58 MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + +++ + ++ + Sbjct: 1161 RQLENLTFLVNDLLDVSKIQAGKMQFNYSEFNIRKLIAECVDDMQNTEGYEISLKHTDDI 1220 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 + +++ N A P V + + E ++ G + Sbjct: 1221 DIYADQHRIEQVIKNFLSNAIKYSPDNKVVIVYTKLMGKEIRVCVQDFGIGIAPDKAKLV 1280 Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + Y + + + + + + Sbjct: 1281 FDRFFRVDHVNYQFSGLGLGLYICAEIVTRHGGTIGVQSEEGKGSEFWFQIP 1332 >gi|197103550|ref|YP_002128927.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] gi|196476970|gb|ACG76498.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] Length = 530 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 77/241 (31%), Gaps = 31/241 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 M ++ + +++ + + H+I +P+ +I +++E LD E + +M +++ Sbjct: 290 MTHSLSERMDAIEA---FAADVAHEIRNPLTSIRSAVETLDLVKEPASRERLMGVVKNDV 346 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------S 103 + + + VD L DI ++ + + Sbjct: 347 QRLDRLVTDISNASRLDAELSRDQPKLVDVGRLLSDIVRLYQATAKTGDVRVRLEIAPGA 406 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +I NL A + P G VT+++ + ++ NG PE Sbjct: 407 EPVRVMGREGPLGQIFRNLIDNARSFSPPGDVVTVALGRGHGRVVATVSDNGPGI-PPEN 465 Query: 164 FTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEII--DDH--NVVLSALL 213 I + S + +A + + + D V + +L Sbjct: 466 LETIFERFYTSRPKGAAFGGNSGLGLSIARQIAEAHGGTVQAQNRTADGEVLGAVFTLIL 525 Query: 214 E 214 Sbjct: 526 P 526 >gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC 15579] gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC 15579] Length = 569 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 68/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L ++ ++ +Q+I + + + Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVEDKKNREKFLQIINDEADRLTRLINDIL 403 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + ++ + I + + Sbjct: 404 VLSNIEKQKQELIKEEIDLNELIEKVYCLVKKSAEDKNIKINIVGGKVPLLIGNKDKYNQ 463 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G+V I + K+ IF ++ G E +I + Sbjct: 464 MIINLIDNAIKYTEPNGEVNIGTRQDKDNIIFWVEDTGVGI-SKEHLDRIFERFYRVDKA 522 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 523 RSRAEGGTGLGLAIVKHIVLGINGKIEVKSEPKKGTKFIVKIP 565 >gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 726 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 69/244 (28%), Gaps = 33/244 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60 + S L + H++ +P+ +I E+L + + + ++ S A Sbjct: 471 SDRTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQDLDYESQREFLQTVSNEA 530 Query: 61 IIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 K ++ + + + + + + ++ + Sbjct: 531 ERLFKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLIHHKLLIDARTPLPP 590 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVT-----------ISVQDSKNENIFSLKINGN 156 + +R +I+ NL A P G ++ + + ++ G Sbjct: 591 VFADRDKVKQIIFNLLSNAIKYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDEGI 650 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 PE ++ + + Y LL + R+ + ++ S Sbjct: 651 GI-KPEDQARLFERFQRVDNSNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSFS 709 Query: 211 ALLE 214 L Sbjct: 710 FTLP 713 >gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1364 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVVTLEK 872 >gi|302874728|ref|YP_003843361.1| multi-sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307690658|ref|ZP_07633104.1| multi-sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302577585|gb|ADL51597.1| multi-sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 568 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 69/223 (30%), Gaps = 19/223 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFM- 67 +L + + H++ +P+ +I E L E +++ + +I + + + Sbjct: 345 ENLRYQFMANVSHELKTPLTSIKGFAETLRYVKEDDKKEKFLNIINEEANRLTSLINDIL 404 Query: 68 -----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRERAK 117 + + ++ IA +K +Q+++ + + Sbjct: 405 TLSDIETHKDKLYEDIEVNAIIKDVFLLLKPIADEKEIQLTYDISDTTVIVSGEQNKFKQ 464 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--V 172 +L+NL A R G V + ++ + +++ NG F + + Sbjct: 465 MLINLIDNAIKYSDRNGFVKVQCFLKEDYVVITVEDNGIGIENICLNRIFERFYRVDEAR 524 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + E K + E + K Sbjct: 525 SRARGGTGLGLAIVKHIILEFKGTIDVESEIGKGTKFIVKVPK 567 >gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 730 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 55/220 (25%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + H+I +P+ AI L+ + + + ++ I L+ Sbjct: 366 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTMADNAADEKLYSDIINQNSEILLQLIND 425 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + ++ + V + + Sbjct: 426 ILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 485 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +++ NL A +G + F +K G + + Sbjct: 486 MQVVTNLITNAIKFTFKGEIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNT 544 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + E + + Sbjct: 545 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 584 >gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 781 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 55/220 (25%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + H+I +P+ AI L+ + + + ++ I L+ Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTMADNAADEKLYSDIINQNSEILLQLIND 476 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + ++ + V + + Sbjct: 477 ILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +++ NL A +G + F +K G + + Sbjct: 537 MQVVTNLITNAIKFTFKGEIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNT 595 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + E + + Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635 >gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM 17393] gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM 17393] Length = 870 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 64/231 (27%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56 A++ ++ L + + H+I +P+ +I +LL + + + I + Sbjct: 639 ARDKALQADTLKSAFL--ANMSHEIRTPLNSIVGFSDLLKDIDAFSPEEVKQFVDTINTN 696 Query: 57 SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + M F + + + D +++ + Sbjct: 697 CTLLLALINDILDLSRIESGSMDFRFAGYNLMFVMQQIYDSQRLSMPPGVELVMKLPEES 756 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + S +++ N A +G + +F ++ G+ E Sbjct: 757 KSIVTDSIRLKQVINNFINNAKKFTTQGSITFGFQTEDPGYTVFFVEDTGSGI-SEENQR 815 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + +S + + + + + + Sbjct: 816 RIFERFYKVDSFTQGAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 866 >gi|331082777|ref|ZP_08331900.1| hypothetical protein HMPREF0992_00824 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400396|gb|EGG80038.1| hypothetical protein HMPREF0992_00824 [Lachnospiraceae bacterium 6_1_63FAA] Length = 489 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + L L A L I HD+ SP+ +I + E L +E ++ R Sbjct: 251 QREAEMRLEKEQLRANLLRSISHDLRSPLTSISGNAENLLANEEKLPAGRRREIYRDIYD 310 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSWTG 106 + + + T + + L + V R++ Sbjct: 311 DSKWLINLVENLLSITRIENGNMKLDMQGEIVEEVIEEALKHVNFRGKDQSVRIECDEIL 370 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++NL A P+ ++ I + + I S++ NG PE+ + Sbjct: 371 MAKMDLKLMLQVIINLVDNAVKYTPKNAEIMIKAEAEGEKVILSVRDNGTGL-TPEQKEK 429 Query: 167 IVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + + + RL V L K Sbjct: 430 VFDMYYTVNRGIGDARRGMGLGLPLCQAIVKAHGSRLEVCDNTPKGTVFKFALSK 484 >gi|229168167|ref|ZP_04295894.1| hypothetical protein bcere0007_31250 [Bacillus cereus AH621] gi|228615262|gb|EEK72360.1| hypothetical protein bcere0007_31250 [Bacillus cereus AH621] Length = 429 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + + + + H++ SP+ +I +L + + + Sbjct: 187 LARSFEEMMHDLQQLERMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105 I + + L + V + + Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ N+ + G + +S++ + G + Sbjct: 307 LQTVKITADHDLLNQVWTNILRNSIKFSEDTGVINVSIKQDIKNVTILISDTGIGIHLDD 366 Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + + L Sbjct: 367 QKRIFERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423 >gi|224823456|ref|ZP_03696565.1| multi-sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] gi|224603911|gb|EEG10085.1| multi-sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] Length = 434 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 19/217 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + + H++ +P+ I LE L ++ +++ M R++ + + Sbjct: 209 FVANVSHELRTPLTVIGGFLETLSDMPDNPALLRQFLPMMMEQSRRMQSLVEDLLILSRL 268 Query: 78 DSLIGLGDIEQVIED--------------FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 ++ E+V R+Q + ++E NL Sbjct: 269 ENSPKNTANEKVNMSELLDTLMVEAEGLSQGRHQIRLQRDTSLWLWGNAQELHSAFGNLV 328 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDS 178 A P GG VT+ ++ + +FS+K +G + Sbjct: 329 SNAVRYTPDGGDVTLCWKEEGEKLVFSVKDSGIGIPREHIPRLTERFYRVDRGRSRGNGG 388 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ RL + S + + Sbjct: 389 TGLGLAIVKHVVARHQARLEVHSEPERGSTFSVVFNR 425 >gi|254507093|ref|ZP_05119231.1| sensor histidine kinase/response regulator fusion protein [Vibrio parahaemolyticus 16] gi|219550088|gb|EED27075.1| sensor histidine kinase/response regulator fusion protein [Vibrio parahaemolyticus 16] Length = 566 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 57/234 (24%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K S + I H++ +P+ + S ELL E + DE L+ S Sbjct: 192 QKARARAEESEKATKEFVAMINHELRTPLNGLLGSAELLAETQLNDEQSTLLNNLVYSGD 251 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WT 105 + + ++ ++ L + + S Sbjct: 252 LLRLIINDILDFSKISAGMMELIPSRFEWASVKQMLNGIFQSKAVEKGVDFRIKESTPIP 311 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I ++++NL A +G + +++ G + T Sbjct: 312 PILIGDFERICQVMVNLVGNAVKFTRQGSVSVTTQWKHDQ-LTITVEDTGIGIEQEDLST 370 Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + + + + Sbjct: 371 LFDPFVQVDRTATRHFEGTGLGLAICKNLVELMRGHIHVHSVKGSGSTFTVTIP 424 >gi|254168437|ref|ZP_04875282.1| PAS fold family [Aciduliprofundum boonei T469] gi|289595798|ref|YP_003482494.1| multi-sensor signal transduction histidine kinase [Aciduliprofundum boonei T469] gi|197622718|gb|EDY35288.1| PAS fold family [Aciduliprofundum boonei T469] gi|289533585|gb|ADD07932.1| multi-sensor signal transduction histidine kinase [Aciduliprofundum boonei T469] Length = 1568 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMD----------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50 +A N+ L S++ L L+ + HD+ +P+ I ++L+ E + Sbjct: 1339 LANNMAVALRSLEIQKDLEKAKNLQELMLHIVSHDLKNPLAVIEGYIDLMKEGFDPSYLD 1398 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSW 104 + ++ I K + G +D L D + ++ +S Sbjct: 1399 AMQMAVEEASSIIEKARLFSKLGAGKIDEERKLIDLKEELENVSSLLSHKYPSGKINISV 1458 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +I ++ N+ A V IS+ D + +G + Sbjct: 1459 DKIEIYAFPIIKEVFTNIIDNAFKYGA--KNVDISLIDKDENVEIRIADDGPGIPKELRN 1516 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T S + V ++ + ++ E V L K Sbjct: 1517 TIFNTFETLSKKKGSGLGLSIVKMIVEMHDGKVWVEENKPKGSVFVIQLPK 1567 >gi|253700622|ref|YP_003021811.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775472|gb|ACT18053.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 796 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 60/234 (25%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAI 61 M+ + L + HD + + I +L E+ + + S Sbjct: 425 QKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVDENSSLWLYLGEIVKAGERSRDMVR 484 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L F R +VD I + E+ + I + ++ + + +++ Sbjct: 485 KLLAFSRKEIISPKAVDLNILCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQVDQI 544 Query: 122 LFM---VAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFPEK 163 L A ++P G ++ G E Sbjct: 545 LMNLAVNARDAMPEGGRLTIGTENATVDEAFCDYRLDARPGEYACLTVADTGFGM-DREL 603 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V + +N L + L + Sbjct: 604 TKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLPR 657 >gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 454 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 28/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H++ +P+ A+ E + ++ Sbjct: 214 AKQEAEAANRAK--SQFLATVSHELRTPLNAVIGFSEAILAGATGPASLERCVEYMDLIH 271 Query: 62 IRLKFMRL------------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + +R + + + + VD V ++ Sbjct: 272 SAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAARLLEHKAVVTGVDFTVVIA 331 Query: 104 WTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ R ++LLNL A P GG+V IS + +++ G PE Sbjct: 332 PDLPRMRLDPRRIRQVLLNLAGNALKFTPAGGRVGISAEHVPEGLALTVEDTGIGI-APE 390 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V + + ++ LL Sbjct: 391 HHAKVWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLASEAGKGTRITVLLP 448 >gi|258592861|emb|CBE69170.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 852 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 K + L + L AL + S + H+ + +GAI ++L + E + + Sbjct: 479 RKQLEQQLLRAEKLRALGEMASGVAHNFNNVLGAILGRAQILRRAVQDPEAQRGLDAIEK 538 Query: 58 ------MSAIIRLKFMRLAFGY-TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 F R VD + D+ + E + + + Sbjct: 539 AALDGANMIRRLQHFTRQRRDEEFFPVDLNQAVKDVLAMTETKWKDEANLAGTTIEVITG 598 Query: 109 -------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + E ++L NL + A ++P GG + + ++ S+ G Sbjct: 599 YGKISSVMGNISELREVLTNLILNAVEAMPYGGTLGLKTEEIDGWICASVSDTGIGMTDD 658 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 K + + + + + + +S L Sbjct: 659 VKSKVFDPFFTTKGVKGTGLGLNVSYGIIRGHHGEIAVQSRPGQGTTVSIRLP 711 >gi|257481802|ref|ZP_05635843.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627978|ref|ZP_06460932.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646446|ref|ZP_06477789.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. aesculi str. 2250] gi|320331859|gb|EFW87797.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. glycinea str. race 4] gi|330873005|gb|EGH07154.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. glycinea str. race 4] gi|331009436|gb|EGH89492.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 436 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|188579809|ref|YP_001923254.1| response regulator receiver sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179343307|gb|ACB78719.1| response regulator receiver sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 575 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 A+ + ++ + L S + HD + + I ++E L+ + + + + Sbjct: 176 AEEALRLVQRLEAIGQLTSGVAHDFNNLLTVISGNIEFLERDVTSERSKRRLDMMRGAAA 235 Query: 58 ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R V + + +++ I +++ + + + Sbjct: 236 RGASLTAQLLAFSRRQRLEPKPVSLNRTVASMRDLLQSSIGGAVQIETALQADLWPALVD 295 Query: 115 RAKILLNLFM---VAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNL 157 +I L + A ++ G + ++ G Sbjct: 296 ATQIELVILNLAINARDAMAVGGRLTIETANVAVAGAPTRPEQPSPGEYVMIAVSDTGTG 355 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE ++ + + + V ++ + + + L + Sbjct: 356 M-TPEVLARVFEPFFTTKAVGKGSGLGLAQVFGFVKQSGGGIRVDTVPGEGTSFKVYLPR 414 >gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase [Halorhodospira halophila SL1] gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase [Halorhodospira halophila SL1] Length = 932 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 27/239 (11%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + L +D L S + H++ +P+ +I E+L + E ++++ Sbjct: 668 RAANERLKELDQLKDEFVSMVSHELRTPLTSIRAFGEILLNNPEMDADQRREFLEVVVRE 727 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVSW 104 S + A VD + +Q+ D S Sbjct: 728 SERLTRLINQVLDLSKIESGSAQWQLEDVDLSRLAREAAESTQQLFTDRQTQLHIEIASD 787 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162 ++++NL A G + + S+ NG E Sbjct: 788 DNAIKGDPDRLMQLIINLLSNAAKFTEPGEGQVWLRLEKGRGDTLRLSVTDNGPGI-SAE 846 Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D + + L+A + L + L + Sbjct: 847 DQRRIFDKFHQISQQQAGKPKGSGLGLAICRLIADAHWGTLWVDSEPGAGASFVCKLPR 905 >gi|323488812|ref|ZP_08094052.1| two-component sensor histidine kinase [Planococcus donghaensis MPA1U2] gi|323397510|gb|EGA90316.1| two-component sensor histidine kinase [Planococcus donghaensis MPA1U2] Length = 522 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLI 53 + + + L + + + H+I +P+ I ++++ + I Sbjct: 299 EKLMVQTEKLKLAGEIAAGVAHEIRNPMTVISGFIQMMHHDPKHRFPEYTELIQSELDRI 358 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 L ++ K +L + + + V + Sbjct: 359 NLIISEFLVLAKPQAATLKVFSVQKALDDILLLFSSELNMNGVTLVKDWEKDFQLNGEEH 418 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVDGNV 172 ++ +NL A S+ G+V +S++ +N+ S + G + I + Sbjct: 419 HLKQVFINLLKNAVESMQEPGEVRVSLKAEENDMFSISFEDTGKGISEKDLNE-IFEPFF 477 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+K +L V LL+ Sbjct: 478 TTKASGTGLGLIVSQKIIQEHKGKLSISSARGIGTVAKILLQ 519 >gi|269928977|ref|YP_003321298.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269788334|gb|ACZ40476.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 936 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/249 (11%), Positives = 66/249 (26%), Gaps = 36/249 (14%) Query: 1 MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELL----DEVGIE 46 +A + + L A+L S H++ +P+ + + LL + Sbjct: 678 LADRAALAVDNAMLYRAAQEAVLAREEFLSVASHELKTPLTTVKGWVYLLADEVRREDPD 737 Query: 47 DEVMQLIRLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFI 94 E ++ S I R + + V + E Sbjct: 738 REAIREFTDELQSQIDRFEGLIADLLDASRIQQGRIDLRPEPVALNDLARRVLARFEHAP 797 Query: 95 AVDKRVQVSWTGEKI----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 R ++ + ++L+NL A P GG V + ++ + + Sbjct: 798 ERTPRHTLTLEAPEPIAGIWDPDRLEQVLVNLISNALKYSPDGGDVRVRLRRDGDVVELT 857 Query: 151 LKINGNLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 + G + ++ + + Y + E+ + Sbjct: 858 VSDEGIGIAPAD-QKRLFQPFSRTEAARQRASGTGLGLYITQRIVREHGGTIDLFSEPGK 916 Query: 206 NVVLSALLE 214 ++ L Sbjct: 917 GTTVTVRLP 925 >gi|188585847|ref|YP_001917392.1| integral membrane sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350534|gb|ACB84804.1| integral membrane sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 525 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 68/241 (28%), Gaps = 27/241 (11%) Query: 2 AKNICFNLSSMD-LVAL---LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLI 53 A+ I N+ L L H+ +P+ AI EL+ + + + LI Sbjct: 277 AQEIENNIEEQKRLAVFRKNLVDNASHEFRAPLSAIRGYSELIIDGIVPEQDQTHYLNLI 336 Query: 54 RLS----SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVSW 104 + L L G + + ++ V+ D ++ + + Sbjct: 337 WKHAVELNEMVDTLLDLSSLETGTINLNKEKMTAKEVLIDAMDMVLPDAEKKNQTITIDK 396 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + K + ++ + A G + + D++ + NG Sbjct: 397 SESKTFFKGDPPRVKQIIVNLLKNAIQYTSEKGTIRLRAFDTEQYVALQVVDNGIGIPKS 456 Query: 162 E---KFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + S + V L + ++ + + + Sbjct: 457 ELDSIFQRFYKVDKARNQNKKSGSSGLGLAIVNELVKIHNGKIEVDSEEGKGSTFTVYFP 516 Query: 215 K 215 + Sbjct: 517 R 517 >gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis TAC125] gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas haloplanktis TAC125] Length = 1107 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 56/242 (23%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L L A + + H+I +P+ AI +LL + + E + + Sbjct: 517 RKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDLLMDTPLSKEQQKHL 576 Query: 54 RLSSMSAIIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + +A L+ + V I + + + + Sbjct: 577 VTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFNLKPVIDSIISTFWLEAKKKNLNLT 636 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + S + +IL NL A +G N F ++ G Sbjct: 637 LNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQGAVTVTVSTTQNNHLFFEVQDTGIG 696 Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + L + D Sbjct: 697 IAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHGSIDLVSEVDKGSCFYFS 756 Query: 213 LE 214 L Sbjct: 757 LP 758 >gi|89097658|ref|ZP_01170546.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89087517|gb|EAR66630.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 420 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 68/220 (30%), Gaps = 13/220 (5%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAII 62 M++++ L + I H++ +P+ L+LL E + A + Sbjct: 196 MKTEKMEVISHLAASISHEVRNPLTVTKGFLQLLKEEEPGGGKRSYYLDTALEELNRAEV 255 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRER 115 + +S L + + +V+ + Sbjct: 256 IISDYLTFAKPHCETNSCFSLEGEIRKAVELITPYGNAHSVEIHCDTEEELYIKGEDAKV 315 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + LLNL A ++P GG ++IS + ++ + G + ++ + + Sbjct: 316 QQCLLNLLKNAIEAMPGGGVLSISAKLQDDKAELLISDTGKGMTSGQLS-RLGEPYFSTK 374 Query: 176 ID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ E + + + LL Sbjct: 375 EGKGTGLGMMVVFRIIEGMGGKIKAESMLNKGTSFTILLP 414 >gi|332071350|gb|EGI81844.1| his Kinase A domain protein [Streptococcus pneumoniae GA41301] Length = 443 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436 >gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 503 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 81/231 (35%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS 59 + L +++ + + + H++ +P+ +IH +E + + E E + ++ + Sbjct: 262 MAVALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPPEREREYLSIVSDETKR 321 Query: 60 AIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKID 110 + + D + + + + +++ ++ E Sbjct: 322 LSRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLENQIVTKNIQIEANFHEEAAH 381 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + ++ +++LNL A + GG++ I + SK + + S+K NG E + Sbjct: 382 VYADKDSIERVVLNLLHNAVKFVQDGGQIIIETEMSKGKVMVSVKDNGAGIDSEEIGLIW 441 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + D + V + +E+ + E V L Sbjct: 442 DRFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVESEIGKGTVFYFTL 492 >gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1364 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVVTLEK 872 >gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 538 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL DE + M L++ ++ Sbjct: 304 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 363 Query: 58 MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + ++ G +D ++ L D V++ + Sbjct: 364 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDSAVELRFDENSPQ 423 Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L N A +G + + +++ F + G +K Sbjct: 424 IVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCVTDTGKGIPDEQKHE 483 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +S + + L ++ E + Sbjct: 484 IFNRFVKLDSFVQGAGLGLSICQSLVKRMGGKIGVESREGEGSCFWFT 531 >gi|117929307|ref|YP_873858.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus 11B] gi|117649770|gb|ABK53872.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus 11B] Length = 637 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 SR+ H++ +P+ I +LL + DE + + + L + T Sbjct: 272 SRMSHELRTPLNVILGFSQLLQMERLTDEQQEWVNQIFKAGRHLLDLINEVLDITRIESG 331 Query: 80 LIGLGDIEQVIEDFIAVDKR---------------VQVSWTGEKIDLSRERAKILLNLFM 124 + L + D I V + +++LNL + Sbjct: 332 RLALSLEAVSLRDVIGETMVALAPLAAEREVTADWVIEDDDVTVRADRQRLRQVMLNLVV 391 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179 A RGG V +S + + + + G PE ++ + Sbjct: 392 NAIKYNRRGGTVLVSARRCADRALIRVADTGIGI-APEHIERLFVPFDRLGADAIDAEGT 450 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L L + V + L Sbjct: 451 GVGLPLTLRLVQVMDGELTVDSTPGDGSVFTVALP 485 >gi|330986822|gb|EGH84925.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. lachrymans str. M301315] Length = 440 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 272 DQFLAFIRDGRDEEIKEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 331 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 332 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430 >gi|328953028|ref|YP_004370362.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453352|gb|AEB09181.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 677 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 66/232 (28%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + + + L S + HD+ +P+ I S L E + ++LI+ Sbjct: 424 TRRAQLQVEAERFRNTLLSSVSHDLRTPLTVIAGSASSLLEAQENLDDKIRLELIQTIYE 483 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEK 108 A ++ + I + V+E+ V ++ + Sbjct: 484 EAKRLDLVVQNLLEISRLQSGEIRINKEWHVLEEVIGCALSQLEGQLKQHSVTINLPQDL 543 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ +NL A P G K+ IS + G ++ Sbjct: 544 PLVQMDALLIERVFINLLENASKYTPPGTKIEISGALEPEALHLVVADQGPGLPPGQE-E 602 Query: 166 QIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + ++ + + + ++ + L Sbjct: 603 RIFEKFYQARPGAIRGAGLGLAICRCIIEAHDGQINAINRPEGGAAFHFTLP 654 >gi|319764394|ref|YP_004128331.1| ATP-binding region atpase domain protein [Alicycliphilus denitrificans BC] gi|317118955|gb|ADV01444.1| ATP-binding region ATPase domain protein [Alicycliphilus denitrificans BC] Length = 585 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 68/237 (28%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ S+ + + + H++ +P+ +I EL++ + V + L A Sbjct: 333 LARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQGA 392 Query: 61 IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSW 104 + + V + + ++ ++ + ++ R+ Sbjct: 393 EHLNALLTEILDLAKVEAGSMPTHPEPVALPVLVHEVTELFRVSAVVKSLQLEARLLPEA 452 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +IL NL A + ++ + + +F + G PE Sbjct: 453 EQPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTDTGPGI-APEL 511 Query: 164 FTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + LA L + + L Sbjct: 512 QEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSSPGEGARFTLALP 568 >gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1006 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 A+NI + + S + H++ +P+ AI SL LL + + + + Sbjct: 763 AQNISERRAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALL 822 Query: 58 ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106 + + + +G V + ++++ I + + + Sbjct: 823 ETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTS 882 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + L NL A P VT+S + +F ++ G + T Sbjct: 883 VQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKT 942 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E + + Sbjct: 943 IFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIPR 997 >gi|291535583|emb|CBL08695.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1] gi|291540825|emb|CBL13936.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4] Length = 495 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + N + L S I HD+ +PI A+ E L + + + + Sbjct: 250 LKDNAEEKIEGEKENKTLISNIAHDLKTPITAVKGYAEGLMDGVADTPEKRDKYIRTIYN 309 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102 ++ + + A T + + I + V Sbjct: 310 KANEMDTLLNELTLYAKIDTNRIPYNFAKINVSEYFNDCVEEIGLDLETKNIRLAYFNYV 369 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + +++ N+ + L + + I ++D + ++ NG Sbjct: 370 DENVLIIADPEQLRRVIHNIIGNSIKYLDKQQGFINIRIKDVGDFIQVEIEDNGRGISAR 429 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ ++ + V+ ++ K Sbjct: 430 DLPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKESIGTVMYFVIRK 488 >gi|258592618|emb|CBE68927.1| putative Multi-sensor signal transduction histidine kinase precursor [NC10 bacterium 'Dutch sediment'] Length = 601 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 17/220 (7%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIR 63 S L L L S + H+I +P+ A+ LELL + + ++ + Sbjct: 381 SRKLADLGRLTSGVAHEIKNPLNAMIIHLELLKQKLNDPSETVAKSLEFLGGEVHRLDRM 440 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRER--- 115 ++ + L + Q + + G ++ + Sbjct: 441 VQGFLRFVRPQTLALRPMSLNTLLQEVVRLAEAQGAHAGVTFVLRLDGTIPPINGDHELL 500 Query: 116 AKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + LNL + A ++P GG VT + + ++ + +G + +I + Sbjct: 501 RQAFLNLVLNACQAMPDGGAVTLATDRSAEGAIRAHVIDHGIGIPAEDL-DKIFRLYYTT 559 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + I V + + + + ++ Sbjct: 560 KPDGNGIGLSLVYRIVQMHGGSVEVDSKVGQGTTMAVTFP 599 >gi|240144353|ref|ZP_04742954.1| sensor histidine kinase [Roseburia intestinalis L1-82] gi|257203602|gb|EEV01887.1| sensor histidine kinase [Roseburia intestinalis L1-82] Length = 495 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + N + L S I HD+ +PI A+ E L + + + + Sbjct: 250 LKDNAEEKIEGEKENKTLISNIAHDLKTPITAVKGYAEGLMDGVADTPEKRDKYIRTIYN 309 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102 ++ + + A T + + I + V Sbjct: 310 KANEMDTLLNELTLYAKIDTNRIPYNFAKINVSEYFNDCVEEIGLDLETKNIRLAYFNYV 369 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + +++ N+ + L + + I ++D + ++ NG Sbjct: 370 DENVLIIADPEQLRRVIHNIIGNSIKYLDKQQGFINIRIKDVGDFIQVEIEDNGRGISAR 429 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ ++ + V+ ++ K Sbjct: 430 DLPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKESIGTVMYFVIRK 488 >gi|224023356|ref|ZP_03641722.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM 18228] gi|224016578|gb|EEF74590.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM 18228] Length = 480 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 73/238 (30%), Gaps = 26/238 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 M KNI L S S I H++ +PI AI SL+LL++ + +E +L + Sbjct: 244 MLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDDRVGDLNEEQKELAQS 301 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + +G + + ++IE I ++ + + Sbjct: 302 IQDNSERLLNITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRVQAEKFNIQIEVQ 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLA 158 E +L NL A P G++ I Q N ++ G Sbjct: 362 YPENKIGKLFVDSEKIAWVLTNLLSNAIRYSPENGRIIIGARQTEDNHIEMYVRDFGKGI 421 Query: 159 RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E + L+ Sbjct: 422 DPRYHQSIFDHYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESEIGKGSCFTLRLK 479 >gi|149914850|ref|ZP_01903379.1| phosphate regulon sensor histidine kinase, putative [Roseobacter sp. AzwK-3b] gi|149811038|gb|EDM70875.1| phosphate regulon sensor histidine kinase, putative [Roseobacter sp. AzwK-3b] Length = 349 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 17/239 (7%), Positives = 63/239 (26%), Gaps = 33/239 (13%) Query: 9 LSSMDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMS 59 ++ ++ + + + H++ +P+ A+ +E L + + + ++ + Sbjct: 106 ITHLEQAGQMRRDFVANVSHELRTPLTALMGFIETLQGPAKGDPRASERFLGVMLSEAQR 165 Query: 60 AIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + G + A D + + + Sbjct: 166 MERLVRDLLSLSRVEADERVRPTDRVDLGKCLSGVGHSLRPVAEAADVHLALDLPDTPVI 225 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD----------SKNENIFSLKINGNLARF 160 + + ++ + ++ GGK I +++ G Sbjct: 226 VPGDVDQLTQVATNLVENAIKYGGKGKTVHIGLTTDANALSLRGPAAIVTVRDEGPGIDA 285 Query: 161 PEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ RL + +L Sbjct: 286 VHIPRLTERFYRIDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIDSELGQGTEFRVILP 344 >gi|148984379|ref|ZP_01817667.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP3-BS71] gi|147923156|gb|EDK74270.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP3-BS71] gi|301800831|emb|CBW33487.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus pneumoniae OXC141] Length = 443 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436 >gi|15901899|ref|NP_346503.1| sensor histidine kinase PnpS [Streptococcus pneumoniae TIGR4] gi|111657577|ref|ZP_01408315.1| hypothetical protein SpneT_02001236 [Streptococcus pneumoniae TIGR4] gi|148992074|ref|ZP_01821848.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP9-BS68] gi|149011939|ref|ZP_01833087.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP19-BS75] gi|168484407|ref|ZP_02709359.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1873-00] gi|168486898|ref|ZP_02711406.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1087-00] gi|168489144|ref|ZP_02713343.1| histidine kinase PnpS [Streptococcus pneumoniae SP195] gi|168491608|ref|ZP_02715751.1| histidine kinase PnpS [Streptococcus pneumoniae CDC0288-04] gi|169834271|ref|YP_001695446.1| histidine kinase PnpS [Streptococcus pneumoniae Hungary19A-6] gi|194398634|ref|YP_002038672.1| histidine kinase PnpS [Streptococcus pneumoniae G54] gi|225855571|ref|YP_002737083.1| histidine kinase PnpS [Streptococcus pneumoniae JJA] gi|225857656|ref|YP_002739167.1| histidine kinase PnpS [Streptococcus pneumoniae P1031] gi|225859839|ref|YP_002741349.1| histidine kinase PnpS [Streptococcus pneumoniae 70585] gi|225861901|ref|YP_002743410.1| histidine kinase PnpS [Streptococcus pneumoniae Taiwan19F-14] gi|298229983|ref|ZP_06963664.1| histidine kinase PnpS [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254057|ref|ZP_06977643.1| histidine kinase PnpS [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501582|ref|YP_003723522.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A] gi|5830530|emb|CAB54573.1| histidine kinase [Streptococcus pneumoniae] gi|14973593|gb|AAK76143.1| sensor histidine kinase PnpS [Streptococcus pneumoniae TIGR4] gi|147763894|gb|EDK70827.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP19-BS75] gi|147929123|gb|EDK80134.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP9-BS68] gi|168996773|gb|ACA37385.1| histidine kinase PnpS [Streptococcus pneumoniae Hungary19A-6] gi|172042361|gb|EDT50407.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1873-00] gi|183570141|gb|EDT90669.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1087-00] gi|183572214|gb|EDT92742.1| histidine kinase PnpS [Streptococcus pneumoniae SP195] gi|183573954|gb|EDT94482.1| histidine kinase PnpS [Streptococcus pneumoniae CDC0288-04] gi|194358301|gb|ACF56749.1| PnpS histidine kinase TCS04 [Streptococcus pneumoniae G54] gi|225721646|gb|ACO17500.1| histidine kinase PnpS [Streptococcus pneumoniae 70585] gi|225724111|gb|ACO19964.1| histidine kinase PnpS [Streptococcus pneumoniae JJA] gi|225724845|gb|ACO20697.1| histidine kinase PnpS [Streptococcus pneumoniae P1031] gi|225727292|gb|ACO23143.1| histidine kinase PnpS [Streptococcus pneumoniae Taiwan19F-14] gi|298237177|gb|ADI68308.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A] gi|327388819|gb|EGE87167.1| his Kinase A domain protein [Streptococcus pneumoniae GA04375] gi|332071517|gb|EGI82010.1| his Kinase A domain protein [Streptococcus pneumoniae GA17570] gi|332198689|gb|EGJ12771.1| his Kinase A domain protein [Streptococcus pneumoniae GA47368] Length = 443 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436 >gi|303259584|ref|ZP_07345560.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP-BS293] gi|303262029|ref|ZP_07347974.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS292] gi|303264485|ref|ZP_07350404.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS397] gi|303266794|ref|ZP_07352675.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS457] gi|303268986|ref|ZP_07354769.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS458] gi|302636669|gb|EFL67159.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS292] gi|302639136|gb|EFL69595.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP-BS293] gi|302641453|gb|EFL71817.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS458] gi|302643702|gb|EFL73968.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS457] gi|302645855|gb|EFL76083.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS397] Length = 443 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436 >gi|260577096|ref|ZP_05845074.1| histidine kinase [Rhodobacter sp. SW2] gi|259020674|gb|EEW23992.1| histidine kinase [Rhodobacter sp. SW2] Length = 587 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 26/237 (10%) Query: 1 MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE---- 46 M K++ S L AL + + + H++ P+ A+ L LL + Sbjct: 344 MQKDLEVAELTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRRRPDEALS 403 Query: 47 --DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRV 100 + LI + R VD + ++E + R Sbjct: 404 SFQRIDDLIDRMGAITRQLKSYARKGGEAFEPVDLRTCVSSALSMMEPQLKLRVVRITRA 463 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLAR 159 + ++++NL + I + + + +++ NG Sbjct: 464 MPRQPVMVMADRIRLEQVIINLLRNGLDATKGRTSPQIDLLLTAGDTATLTVRDNGPGIT 523 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + + + + RL +D V L Sbjct: 524 DLEN---LFEPFYTTKKAGEGVGLGLAISSGIVTDLGGRLTAHNAEDGGAVFEMQLP 577 >gi|160894156|ref|ZP_02074934.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50] gi|156864189|gb|EDO57620.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50] Length = 897 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + + L A L I HD+ +P+ AI S + L D+ E + Sbjct: 656 KEEAAVLAQNEQLRANLLRAISHDLRTPLTAISGSADNLLANYKKMDDALREQTFTDIYD 715 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108 S + + + G V+ + +++V + + + ++V+ + Sbjct: 716 DSMWLINLVENLLAVTRIEGGQVNLTRSIELMDEVVSEALKHINRKSKEHTIRVTSGKDF 775 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I + ++++NL A P G + I + S+ NG E+ Sbjct: 776 ILALIDAKLIVQVIINLVDNAIKYTPVGSVIEIHTDQKEQWVTVSVSDNGPGI-PDEQKP 834 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + S + + + + + L Sbjct: 835 RIFDMFYSGANKVVDSRRSLGLGLSLCKSIVTAHGGTISVSDNQPNGTAFKFTLP 889 >gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1442 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 59/221 (26%), Gaps = 27/221 (12%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-------MSAIIRLKFMRLAFG 72 + I H+I +PI AI LL + ++ + ++ L F ++ Sbjct: 821 ATISHEIRTPINAILGMTSLLLDTSLDPQQQDWVQTIRYGGEVLLNLINDILDFSKIESQ 880 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKILLNLF 123 + L + + + D +A + V S I +IL NL Sbjct: 881 KLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQILANLL 940 Query: 124 MVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173 A P+G V K ++ G PEK ++ + Sbjct: 941 SNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGI-PPEKLDRLFKPFSQVDSSIS 999 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E + Sbjct: 1000 RQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIP 1040 >gi|15903935|ref|NP_359485.1| sensor histidine kinase PnpS [Streptococcus pneumoniae R6] gi|116515950|ref|YP_817298.1| sensor histidine kinase PnpS [Streptococcus pneumoniae D39] gi|148998123|ref|ZP_01825636.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP11-BS70] gi|149006951|ref|ZP_01830632.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP18-BS74] gi|149023778|ref|ZP_01836239.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP23-BS72] gi|168577114|ref|ZP_02722934.1| histidine kinase PnpS [Streptococcus pneumoniae MLV-016] gi|307068696|ref|YP_003877662.1| signal transduction histidine kinase [Streptococcus pneumoniae AP200] gi|307128344|ref|YP_003880375.1| histidine kinase PnpS [Streptococcus pneumoniae 670-6B] gi|15459587|gb|AAL00696.1| Histidine kinase [Streptococcus pneumoniae R6] gi|116076526|gb|ABJ54246.1| sensor histidine kinase PnpS [Streptococcus pneumoniae D39] gi|147756133|gb|EDK63176.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP11-BS70] gi|147761552|gb|EDK68517.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP18-BS74] gi|147929574|gb|EDK80567.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP23-BS72] gi|183577278|gb|EDT97806.1| histidine kinase PnpS [Streptococcus pneumoniae MLV-016] gi|301795012|emb|CBW37476.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus pneumoniae INV104] gi|306410233|gb|ADM85660.1| Signal transduction histidine kinase [Streptococcus pneumoniae AP200] gi|306485406|gb|ADM92275.1| histidine kinase PnpS [Streptococcus pneumoniae 670-6B] gi|332071154|gb|EGI81649.1| his Kinase A domain protein [Streptococcus pneumoniae GA17545] gi|332198896|gb|EGJ12977.1| his Kinase A domain protein [Streptococcus pneumoniae GA47901] Length = 443 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436 >gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 1749 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50 + + + L L + S H+ +P+ I +S ELL+ + + Sbjct: 1501 LEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKWTEEKQLTHL 1560 Query: 51 QLIRLSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 I+ + L + + +D + ++ + I+ + + + Sbjct: 1561 HRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPRPLDVVAYCQNLVEEIQLNLNNQQVNFI 1620 Query: 103 SWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 S E+ IL+NL A P V + +F ++ G Sbjct: 1621 SEHQSMSCCMDEKLLGHILINLISNAIKYSPANSNVQVKFYCRDRCAVFEVQDWGIGIPA 1680 Query: 161 PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V ++ + + + + + Sbjct: 1681 EDITHLFESFYRAKNVGNILGTGLGLAIVKKCVDIHQGEISVSSNPEVGTLFTVNIP 1737 >gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 823 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/229 (9%), Positives = 57/229 (24%), Gaps = 23/229 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK 65 L + L + + + H++ +P+ +I LL + + + + L Sbjct: 313 LEADHLRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNLVATDLSYAEKINRNGKHLLN 372 Query: 66 FMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + L ++ + + + GE Sbjct: 373 LINDILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIPMFET 432 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFT 165 + K+ L A +GG + S + + +G + Sbjct: 433 DGEKLKRVLINLLGNAIKFTHKGGVKVRLISQSGHRLNIEVNDSGIGIPQDKLETIFQPF 492 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + VD + + + + + + L Sbjct: 493 RQVDSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLP 541 >gi|94986414|ref|YP_605778.1| periplasmic sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94556695|gb|ABF46609.1| periplasmic sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 524 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVAL-----LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIR 54 +A + LS ++ + S H++ +P+ AI LL + + + Sbjct: 276 LAHALNAMLSRLE-ASFEAQRRFTSDASHELRTPVTAISGHASYLLRRTDPTEGQRESLN 334 Query: 55 LSSMSAIIRLK-------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + + E + + V Sbjct: 335 IIRRESERLTNLIASLLQLARSDSGALVLTRQPILSGLFLAEIARELLPLAQAQGTELVA 394 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++++NL A + R + + E ++ +G Sbjct: 395 QGQDVAFEGDPDRLKQVIINLVGNALKAGARHVTLGSQPAEGGREVRLWVQDDGPGI-PS 453 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + + R+ E L Sbjct: 454 EHLARLFDRFYRVEDSRSRDQGGAGLGLSIAKGIVDAHGGRIWLESEVGRGTTAYVQLP 512 >gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 900 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 62/245 (25%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + ++ + + H+I +P+ I +L + D Q + L Sbjct: 483 EKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDLQRQQLELIH 542 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQ 101 SAI + + ++ L + + + V Sbjct: 543 RSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHLIVA 602 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKIN 154 + + + ++L NL + + + + + + + +F + Sbjct: 603 PNVPDMLVGDQTKIMQVLTNLIDNSLKFTRKGQITLTVSNQPSPNSFANGDMLLFEVADT 662 Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G D + + L R+ E Sbjct: 663 GIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGGRIWFESELAKGTRF 722 Query: 210 SALLE 214 S L Sbjct: 723 SFTLP 727 >gi|320160335|ref|YP_004173559.1| sensor protein KdpD [Anaerolinea thermophila UNI-1] gi|319994188|dbj|BAJ62959.1| sensor protein KdpD [Anaerolinea thermophila UNI-1] Length = 853 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 57/225 (25%), Gaps = 22/225 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLSSMSAII 62 L L + I HD+ +P+ A+ SL L + ++++ + Sbjct: 621 EKLQTALLNSISHDLRTPLSAVEGSLSSLLEAETNGLQMDRETRLDLLENATEEAERLNR 680 Query: 63 RLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + V LIG + S E Sbjct: 681 LVGNLLDMTRIEAGALRIRRRPCDVQDLIGTALTQFQRRLQDRKVSTHIASDIPEVEMDF 740 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 ++L L A P G ++ + + S+ G + F + Sbjct: 741 VLIEQVLERLLDNAVKYSPPGSEINVEAKVRDGALYISVADRGEGIPPEDLERIFGKFYR 800 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E D + + Sbjct: 801 VQRPDGVSGTGLGLSICKGIVEIHGGRIWAENRPDGGAKFTFTIP 845 >gi|308270674|emb|CBX27285.1| hypothetical protein N47_I07050 [uncultured Desulfobacterium sp.] Length = 1252 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 73/245 (29%), Gaps = 32/245 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 K++ L S L A+ L I HD + + I + EL + + + ++ I Sbjct: 868 KKSLEQQLRQSQKLEAIGILSGGIAHDFNNLLTTIIGNTELTLVDIPKDDPVRQGIEEIM 927 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------E 107 + A + + +++ L + +E + + + Sbjct: 928 AAGERAASLTRQLLAFSRKQVLQPTVMYLNETALDMEKMLCRMIGEDIELKTILAPDLGQ 987 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLK 152 + + ++++NL + A ++P GGK+T + S+ Sbjct: 988 IEADAGQIEQVIMNLVVNARDAMPYGGKITIETENVNIDDGYAHTHVAVIPGPYVMLSIS 1047 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E I + + + + V + ++ + Sbjct: 1048 DTGVGM-PDEIKAHIFEPFFTTKVKGKGTGLGLSTVYGIIKQSNGNIWVYSEPGKGTTFK 1106 Query: 211 ALLEK 215 L + Sbjct: 1107 IYLPR 1111 >gi|294506248|ref|YP_003570306.1| Two component system histidine kinase, [Salinibacter ruber M8] gi|294342576|emb|CBH23354.1| Two component system histidine kinase, putative [Salinibacter ruber M8] Length = 1198 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 63/239 (26%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQ 51 + + + + L + + H+I +P+ +I E+ L + Sbjct: 946 LRDAKEEAEEASRMKSALLANMSHEIRTPLTSIIGFAEVVGTEASTLDLPTGSPLPDCAD 1005 Query: 52 LIRLSSMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 I + A + + + ++++V E+ + ++ Sbjct: 1006 RIERGGKRLLDTLEGVLNLSKLEAGQMELDAEPVPLISEVQRVAEELQPKAREKEIDLRL 1065 Query: 107 EKIDLSRERAK-----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 E E + I NL A G V + + + ++ G P Sbjct: 1066 ETESAWAEADEGGVQIIARNLLSNAIKYTEADGTVWVRSYRADGRAVLEVEDTGIGM-AP 1124 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + A E + + + + L Sbjct: 1125 EAVDDLFEPFRQASEGFSREYEGTGVGLAVTKRAAEEMDGSVDVDTEEGEGSRFTVRLP 1183 >gi|302561592|ref|ZP_07313934.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces griseoflavus Tu4000] gi|302479210|gb|EFL42303.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces griseoflavus Tu4000] Length = 381 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 51/237 (21%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 137 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 196 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G Q R + Sbjct: 197 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQSADRFLLRVQRPL 256 Query: 109 IDLSRERAKILLNLFMVAHASLPRGG-----------KVTISVQDSKNENIFSLKINGNL 157 DL + K+ L + ++ G ++ G Sbjct: 257 PDLWADPDKVDQVLSNLLENAVRHGEGTVTIDVTPSVSPRERENGENAATSVTVSDEGPG 316 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + L Sbjct: 317 IPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPGGGAEFRFTLP 373 >gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 877 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 63/235 (26%), Gaps = 26/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S + S I H+I +P+ A+ E+L + + E+ + + L +++ Sbjct: 386 AKERAEASSRAKMA--FVSHISHEIRTPMNAVVGLSEMLLDSCEDPEIREDLELIHQASM 443 Query: 62 IRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW------T 105 + + S+ L + A K ++ + Sbjct: 444 SLTEILGDILDLAAVEAGKLRLEESSFSMEDLCAPVFSLMGAEAKRKGLEFRGKVEDGAS 503 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 G + ++L NL A P G +F + G E+ Sbjct: 504 GHFVGDQVRIRQLLWNLLSNAIKFTPSGSVSARISASEGG-VLFEVSDTGVGI-EEEQLD 561 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D I + L + S L Sbjct: 562 RIFDYFERGEELLTRRIPGTGLGLALCKKLVSLMGGAIRVRSRRGEGSCFSIWLP 616 >gi|225570072|ref|ZP_03779097.1| hypothetical protein CLOHYLEM_06168 [Clostridium hylemonae DSM 15053] gi|225161542|gb|EEG74161.1| hypothetical protein CLOHYLEM_06168 [Clostridium hylemonae DSM 15053] Length = 245 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 15/221 (6%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 + L S + S I H+I +P+ ++++L+L++ E + Sbjct: 24 LQKLLESQKMT---ISSISHEIRNPLTLVYSTLQLIEAQHPEVSTYKYWDSMRSDVEYMT 80 Query: 65 KFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + S + + + + Sbjct: 81 ILLEELSAFNNGESLSLSEIDCSSFLRPVVLSFAASLAESSIEFTSKLEPDLPVICGDAV 140 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + +++LNL A ++ G + + S++ NG E I + V Sbjct: 141 KLREVILNLLQNAKDAVNPDGAIYFHAFTEAGKLCISVRDNGCGI-PQEDMEHIFEPFVT 199 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A +K L + V + L Sbjct: 200 YKQGGTGLGLAIGRRIASAHKGTLSAVSVPGGPTVFTLSLP 240 >gi|223983581|ref|ZP_03633762.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM 12042] gi|223964426|gb|EEF68757.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM 12042] Length = 934 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + L A L I HD+ +P+ +I + +L + + +L + A Sbjct: 683 KEEAQMQVKNEQLRANLLRSISHDLRTPLTSISGNAGILLNSPQSLDSARSRQLIADIAE 742 Query: 62 I-------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 K + + + + + + Sbjct: 743 DSAWLINLVENLLSITKIENGTMSLNLQTELMEEVITEALQHISRHRREHHIVHEECPQI 802 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + + ++++NL A P G ++TI E + + +G Sbjct: 803 VLVRIDSQLMMQVIINLVNNAIQYTPEGSRITIRSFLEGQELVVEVADDGPGI-PDAMKE 861 Query: 166 QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D S + + + RL H + S Sbjct: 862 RIFDLFYTSRGQIADSRRGMGLGLALCQSIISAHGGRLAVRDNVPHGALFSFRCP 916 >gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697] gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697] Length = 867 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 18/227 (7%), Positives = 55/227 (24%), Gaps = 18/227 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59 L + L + + + H+I +P+ AI +LL + + ++ I ++ Sbjct: 636 RDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLEGFSSEEVQQFVETININCTL 695 Query: 60 AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107 + + S + + + + ++ + Sbjct: 696 LLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDSQRLSMPQGVELRTDFPEGTGKS 755 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I S +++ NL A +G + + + ++ G+ Sbjct: 756 MITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVEDSGHTVIFVEDTGSGISDENLGHIF 815 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + Sbjct: 816 ERFYKADNFTQGAGLGLSICQTIVERLNGTITVTSKLGKGTHFEVRI 862 >gi|148989901|ref|ZP_01821184.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP6-BS73] gi|168494163|ref|ZP_02718306.1| histidine kinase PnpS [Streptococcus pneumoniae CDC3059-06] gi|182685019|ref|YP_001836766.1| sensor histidine kinase PnpS [Streptococcus pneumoniae CGSP14] gi|221232793|ref|YP_002511947.1| alkaline phosphatase synthesis sensor protein [Streptococcus pneumoniae ATCC 700669] gi|303256047|ref|ZP_07342069.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus pneumoniae BS455] gi|147924686|gb|EDK75771.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP6-BS73] gi|182630353|gb|ACB91301.1| sensor histidine kinase PnpS [Streptococcus pneumoniae CGSP14] gi|183575923|gb|EDT96451.1| histidine kinase PnpS [Streptococcus pneumoniae CDC3059-06] gi|220675255|emb|CAR69847.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus pneumoniae ATCC 700669] gi|301802755|emb|CBW35528.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus pneumoniae INV200] gi|302596963|gb|EFL64087.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus pneumoniae BS455] gi|332198504|gb|EGJ12587.1| his Kinase A domain protein [Streptococcus pneumoniae GA41317] Length = 443 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436 >gi|149002912|ref|ZP_01827823.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS69] gi|237650563|ref|ZP_04524815.1| histidine kinase PnpS [Streptococcus pneumoniae CCRI 1974] gi|237821703|ref|ZP_04597548.1| histidine kinase PnpS [Streptococcus pneumoniae CCRI 1974M2] gi|147758915|gb|EDK65910.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS69] Length = 443 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436 >gi|320155892|ref|YP_004188271.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] gi|319931204|gb|ADV86068.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] Length = 768 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 58/243 (23%), Gaps = 34/243 (13%) Query: 4 NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 L + + A + + H+I +P+ + + ++L + + +E + ++ Sbjct: 297 EKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLNEEQRKHLKT 356 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------- 105 S + + Y+ + + + I V + Sbjct: 357 LYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVY 416 Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGN 156 ++L NL A R ++ N +K G Sbjct: 417 STVPTGRWYCADKARLRQVLFNLLNNAVKFTARGLVEVYFEEHTREKANYLSIKVKDTGI 476 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +I + V +A + + + Sbjct: 477 GIPES-AQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFT 535 Query: 211 ALL 213 L Sbjct: 536 VEL 538 >gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp. m3-13] Length = 594 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 25/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAGTDEEKKELASVIYD 410 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSW 104 L R+ G+ + + I + + +V Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIVLQSRVEG 470 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 G +++ NL A G +TI + N +K +G+ + Sbjct: 471 DGVIQMDVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNGVKIDVKDSGHGIPEEDLP 530 Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + ++ S + Sbjct: 531 FVFERFYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFSMYIP 585 >gi|289772133|ref|ZP_06531511.1| two component sensor kinase [Streptomyces lividans TK24] gi|289702332|gb|EFD69761.1| two component sensor kinase [Streptomyces lividans TK24] Length = 454 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 13/204 (6%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 H++ +PI + LEL+ D+ +E ++L+ ++ + R F Sbjct: 247 HELRTPITIVRGHLELMGDDPAEREETVRLVTDELDRMSRIVEDLLLLAKAERPDFVTPE 306 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 V D+ + + E + + ++ L A G + Sbjct: 307 PVQLAELTADVFVKARTLGEREWVLDGVADREAHLDPQRITQAMVQLAQNAVQHTTAGQR 366 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190 V I + + + +G + + F + G + + V +A Sbjct: 367 VRIGSRADGSRIELYVADSGPGVQPQDAEVIFERFRRGTARRGVRGTGAGLGLSIVRAIA 426 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + R+ LE Sbjct: 427 EGHGGRVDLRTTAGGGATFVLTLE 450 >gi|283852466|ref|ZP_06369735.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572204|gb|EFC20195.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 482 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + L L + + + I H+I +P+G I ++ ELL + +L+ Sbjct: 248 REQLERELQQQEKLAGMGRMVAGIAHEIRNPLGIIRSTAELLLKRNKETDGVNARLLSAI 307 Query: 57 SMSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + K + Y VD + L +E + Sbjct: 308 FDESKRLSKTVGDFLDYARPKAPKQEVVDLAVTLDQALVFLEAKCEELGVAVTKDYSAGL 367 Query: 110 DLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLARF 160 ++ ++ + ++ V +L R + ++ ++ +G Sbjct: 368 NVRGDKDLLYRAVYNVLSNALDSLAEDREKARPAAIAVAATADATAVTLAITDSGPG-FC 426 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +++D + + V + + L E D ++ Sbjct: 427 PENKDRLLDPFFTTKDAGTGLGLAIVRNIVESHNAALSLENAPDAGARVTMTFP 480 >gi|262402142|ref|ZP_06078703.1| signal transduction histidine kinase [Vibrio sp. RC586] gi|262350924|gb|EEZ00057.1| signal transduction histidine kinase [Vibrio sp. RC586] Length = 569 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/246 (8%), Positives = 66/246 (26%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + + + + L L + + H++ +P+ A+ +++L +V Sbjct: 185 LQRLVEIRTRELKLAQKLAEQASQSKSNFLAMMSHELRTPLNAVLGLIDILRNDSTSYQV 244 Query: 50 MQLIRLS---------------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + I Sbjct: 245 ELLEQMESSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLEQSLVYHRQIAQDKGI 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + T E S +IL N+ A + G V + + +++ F ++ Sbjct: 305 RFNIIINKDQTLEYYTDSARLTQILFNIVGNAVKFTKK-GHVDVQLNYAEDGVSFRIQDT 363 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + + + + + Sbjct: 364 GIGIERKRI-QQLFTPFVQADNSITRHYGGTGLGLAITKHLIELMQGTIHVDSEINVGTI 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLHIP 428 >gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126] Length = 773 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S+ + + + H+I +P+ AI L E ++ Q + S+ Sbjct: 257 LQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALESTDNEQRQQYLEKVQRSS 316 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLG----------------DIEQVIEDFIAVDKRVQVSW 104 L M ++ I + + + + + ++ Sbjct: 317 TALLDLMNSILDFSKVEADKIEIVDEPFTLTKTIDKLAQVFQVKAQQKQLQLLFDIRCHT 376 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + S + ++LLNL A G + ++V+ +N+ FS+ G Sbjct: 377 NLQCRGDSEKIYQVLLNLLSNAIKFTAS-GHIILTVEKRENQLAFSVSDTGMGI-SEHVK 434 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + + L L E D S L Sbjct: 435 SKLFKAFVQADASISREYGGTGLGLAICKRLVELMGGDLTLESEVDKGSCFSFALP 490 >gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] Length = 983 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 61/230 (26%), Gaps = 21/230 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + L + + H+I +P+ AI +L E+E + I + + Sbjct: 612 AKNRAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSILATAEEEEEKSEYINIIENNNQ 669 Query: 62 IRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + V I + + S Sbjct: 670 LLLQLISDVLDIAKIEASSLDFNYSSLDLNVLMNELESTALMRITSPDVCLEMIPDSDNC 729 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 I ++I++NL A +G + F + G EK + Sbjct: 730 WVITERNRLSQIIINLLNNAIKFTQKGKITFGYKLQKEK-IYFYVTDTGCGI-PAEKQDK 787 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + + L Sbjct: 788 IFERFIKLNNFAQGTGLGLSICKSIVDAMGGEIGVDSKVGNGSTFWFTLP 837 >gi|297198450|ref|ZP_06915847.1| phosphate regulon sensor kinase PhoR [Streptomyces sviceus ATCC 29083] gi|197716140|gb|EDY60174.1| phosphate regulon sensor kinase PhoR [Streptomyces sviceus ATCC 29083] Length = 372 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 51/234 (21%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 131 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 190 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G Q R + Sbjct: 191 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGLAADRFLLRLEQPL 250 Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 L + ++L NL A +D ++ G Sbjct: 251 PMLWADPDKIDQVLSNLLENAVRHGEGTVTIAITPTASPREDEDTGTSVTVSDEGPGIPE 310 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + L Sbjct: 311 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPQGGAEFRFTLP 364 >gi|4530446|gb|AAD22037.1| histidine kinase PnpS [Streptococcus pneumoniae] Length = 422 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++L S H++ +P+ +I E + +E ++D+ + +I S+ + Sbjct: 194 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 251 Query: 65 KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + L Q + +VQV + S+ Sbjct: 252 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 311 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++ILLNL A +GGK+ + Q S+ G E +I + Sbjct: 312 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 370 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 371 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 415 >gi|301385593|ref|ZP_07234011.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato Max13] gi|302058823|ref|ZP_07250364.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato K40] gi|302132148|ref|ZP_07258138.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331014863|gb|EGH94919.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 436 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNAEGSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|256393336|ref|YP_003114900.1| histidine kinase [Catenulispora acidiphila DSM 44928] gi|256359562|gb|ACU73059.1| histidine kinase [Catenulispora acidiphila DSM 44928] Length = 592 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 20/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVM 50 + + + + I H++ SP+ I LE+ + + Sbjct: 363 ERREQMDAQRKA--MVADIAHELRSPLTNIRGWLEVTRDGLVEPTPDLITSLHDEAVVLQ 420 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++I A +R+ ++D L + + + + V + Sbjct: 421 RVIDDLQDLASADAGTLRVHPQPIAALDLLQQVALAHRAQAADLGITVEVHAEPGLDVYA 480 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 ++L NL A G VT++ + + + S + G + F + Sbjct: 481 DPERIRQVLGNLVSNAVRHSASGAHVTLTARPTADGVELSAQDTGCGIAQADLPYIFDRF 540 Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + E ++ L Sbjct: 541 WRSEKSRNRGTGGSGLGLAIARHLVLAHGGTITVESFVGVGTTMTVRLP 589 >gi|153806976|ref|ZP_01959644.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185] gi|149130096|gb|EDM21306.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185] Length = 1344 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 66/213 (30%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 I H+ +P+ I +E+L ++ + + ++++ + + + + + G Sbjct: 826 NISHEFRTPLTLILGQIEVLMQMDLGTTIYNRILRIYKNAWHMRNLISELLDFRKQEQGY 885 Query: 77 VDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125 + + + E + + E I + + ++ +F Sbjct: 886 LKLKVEEQNLVAFTRQIYMCFYEYAQKKEITYRFDNVEETISVWFDSKQLQKVIFNLLSN 945 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID-SHDI 181 A P G + + V+ ++ I S+ G F + + S+ I Sbjct: 946 AFKYTPNKGSIRVEVRMLASQAIVSVCDTGVGIPEEHISKIFERFYQTDNSSSFTLGTGI 1005 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ E + L Sbjct: 1006 GLALAKGIMNMHHGKIDVESTVGKGTKFTLSLP 1038 >gi|108763723|ref|YP_629389.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622] gi|6578850|gb|AAF18102.1|AF204400_2 FrgB [Myxococcus xanthus] gi|108467603|gb|ABF92788.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622] Length = 510 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 14/224 (6%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLS 56 + L + + +++ HD+ +PI A+ + + L E + E + L+ Sbjct: 273 SRSERLERLATLGRFSAQMAHDLKNPIAAMKGAAQYLKEEHARGRSWDGQGEFLDLLLEQ 332 Query: 57 SMSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + VD + + + + + Sbjct: 333 VERLDRVVDTYQRLARVEPLPKPVDLRRLVEGVLSLQVFASPGKVVIIRELAAGLPPCAG 392 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + L A ++P GG +T+ + ++ G + + D Sbjct: 393 DQDLLANALENLVRNACEAMPGGGTLTVRALRDGADVAMEVEDTGEGMDARTR-ERAFDD 451 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +V + + +L + V+ L Sbjct: 452 FFTTKASGSGLGLAFVRRVVEAHGGEVLLTSREGRGTVVRMRLP 495 >gi|47569127|ref|ZP_00239815.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|47554198|gb|EAL12561.1| sensor histidine kinase, putative [Bacillus cereus G9241] Length = 423 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKISIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093] gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093] Length = 379 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 20/216 (9%), Positives = 55/216 (25%), Gaps = 22/216 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + H++ +P+ ++ ++L + + + I S + + + + Sbjct: 148 LSHELRTPLTSVIGYAQVLGDEIIGPLNDKQRAYAETIYTSGLQLMRLIDDLLDLSRLEA 207 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + L + +Q A++L L Sbjct: 208 GDVALQRRPVAVAELLRAGVAGVGAEARAKGLSVTLQPPPEAALYGDPARLAQVLGALLS 267 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSH 179 A P GG+V +S + ++E + ++ +G Sbjct: 268 NAVKFTPLGGRVWVSAELRESEVVLMVRDDGIGIAPEHHEGVFSPFFLVDASSARQHRGA 327 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ L + Sbjct: 328 GLGLALARRIVELHGGRIWVASELGRGSTFYVALPR 363 >gi|225575609|ref|ZP_03784219.1| hypothetical protein RUMHYD_03701 [Blautia hydrogenotrophica DSM 10507] gi|225037162|gb|EEG47408.1| hypothetical protein RUMHYD_03701 [Blautia hydrogenotrophica DSM 10507] Length = 662 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 23/231 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA----- 60 L L L I HD+ +P+ +I + ++L + + R+ Sbjct: 427 ALRLQQEQLRGNLLRAISHDLRTPLTSISGNADMLMKSYQMMADSERTRIFHDIYEDAVW 486 Query: 61 -----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 V+ ++ K Q Sbjct: 487 LINLVENLLSVTRIENGTMDIVLQPEMVEDVLDASMKHLNRHVKNHKLKVSQADDMLMAK 546 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ ++L NL A P G ++ I+V + +++ +F + NG+ ++ +I Sbjct: 547 MDAKLIIQVLTNLVDNAFKHTPEGSEIEINVYEKRHKVVFEVADNGDGV-PEDQKEKIFT 605 Query: 170 GNVE---STIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T D + + + R+ E H V +E Sbjct: 606 MFYSGDHTTSDGRRCMGMGLTLCKSIIEAHGGRIWVEDNHPHGAVFRFEIE 656 >gi|221195327|ref|ZP_03568383.1| integral membrane sensor signal transduction histidine kinase [Atopobium rimae ATCC 49626] gi|221185230|gb|EEE17621.1| integral membrane sensor signal transduction histidine kinase [Atopobium rimae ATCC 49626] Length = 367 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 65/226 (28%), Gaps = 21/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 + L L S + H++ +P+ AI ++E + + + E ++ + + + M Sbjct: 140 KDLKLEHRLTSDVAHELRTPLMAILATVEAMQDGVLPADQERLENVASEARRLSRLVDAM 199 Query: 68 RL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------SWTGEKIDLSR 113 D + + + + E K + Sbjct: 200 LHLSRLENGSTSIRPVKNDLIALVQSLVKSQEPLFRERKICLQFINKTGRDQCFVKVDAD 259 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDG 170 + ++NL A G V+++V++S+ + + S+ G + + Sbjct: 260 MIREAIVNLLSNAMRYTDVNGLVSVTVEESRGDVVISVSDTGIGIAKEDIPQTFSRFWRS 319 Query: 171 NVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E S + Sbjct: 320 DSSRERASGGLGVGLSITKEILDRHNGTISIESELGRGTTFSLHIP 365 >gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1670 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 54/244 (22%), Gaps = 33/244 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + L+ L A + + H+I +P+ +I L+ ++ + + Sbjct: 920 RRRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSADLDSAQREYL 979 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------------- 99 SA L + ++ L +E ++ + Sbjct: 980 NKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAESKGIDFI 1039 Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153 V ++L NL A RG + F ++ Sbjct: 1040 LSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDRGEVNLIVTCEENCTGEASIKFIVRD 1099 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 +G E + L + E Sbjct: 1100 SGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMGGTVSVESHPGEGSS 1159 Query: 209 LSAL 212 Sbjct: 1160 FYFT 1163 >gi|83951998|ref|ZP_00960730.1| phosphate regulon sensor histidine kinase, putative [Roseovarius nubinhibens ISM] gi|83837004|gb|EAP76301.1| phosphate regulon sensor histidine kinase, putative [Roseovarius nubinhibens ISM] Length = 347 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 16/227 (7%), Positives = 56/227 (24%), Gaps = 29/227 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ A+ +E L + D + + + ++ + Sbjct: 121 FVANVSHELRTPLTAMMGFIETLQGPARGDTAASDRFLATMYSEANRMERLVRDLLALSR 180 Query: 73 YTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + + +L + ++ + Sbjct: 181 VESEERVRPNQTVDLAGLVRSVAHTLRPLLENSEVTLDLELPQSDTELPGDADQLRQVVT 240 Query: 124 MVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD- 169 + + ++ + S++ G P + Sbjct: 241 NLIENAVKYGGKGKTVTVTLSHAENDPMLRRDALLLSVRDEGPGISEIHIPRLTERFYRV 300 Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + ++ RL E V +L + Sbjct: 301 DSHRSREMGGTGLGLAIVKHIVSRHRGRLRIESELGQGSVFRVILPR 347 >gi|310819148|ref|YP_003951506.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392220|gb|ADO69679.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 488 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 17/226 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSS 57 M + + + L + + + H++ +PIG I LL E + + + Sbjct: 259 MREALESRDRQLKL---MLAGVAHEVRNPIGGIELFSGLLAEDVRAGSLSEAGGHVTRIQ 315 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL 111 + + + + ++ D K V + L Sbjct: 316 REVAYLQRIVEDFLAFAREQPLARAPVEAPTLLSDACELLAGEAEAKGVALEVDAVPTRL 375 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + + L A + P GG+V ++ + + ++ +G PE +I Sbjct: 376 EADGSLLTAALVNLVKNAIQASPSGGRVQVTGRPADAVYAIQVRDSGPGVPPPE-TERIF 434 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + V + L Sbjct: 435 EPFFTTREKGTGLGLPLARKIIRAHGGELSLSSAPGN-TVFTVTLP 479 >gi|222150886|ref|YP_002560039.1| hypothetical protein MCCL_0636 [Macrococcus caseolyticus JCSC5402] gi|222120008|dbj|BAH17343.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 487 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 71/223 (31%), Gaps = 14/223 (6%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQLIR 54 N +++ LL + H+I +P+ +I +ELL+ ++ I Sbjct: 263 EDINTQRKEIIGLLAANTAHEIKNPLTSIKGFVELLELEYDPVHNNQKFHIVKSELERIN 322 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L ++ K + + D + + + + Q + I++S++ Sbjct: 323 LIVNQFLLLGKPTTVDVERVDARDIIRDILNFLDYDLAIHNIRVVKQFTDEPTLINVSKD 382 Query: 115 RA-KILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++L+N+ A ++ I+V+++ + NG + ++ + Sbjct: 383 QFKQVLINVIQNAKDAMASREPAVLKITVENTNGYTVMRFIDNGEGM-DTDVQQELFNPF 441 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + Sbjct: 442 FTTKLHGTGLGLPVTKSIVDAHHGLIEVVSSKKKGTTFIISFP 484 >gi|219852263|ref|YP_002466695.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546522|gb|ACL16972.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 781 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 23/231 (9%) Query: 4 NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 + +S+ +L A + S HD+ +P+ +I + +LLD D+ ++ I Sbjct: 543 SERLQVSNEELQRFAYIAS---HDLQAPLRSIVSFSQLLDRRYRGKFDKDADDYIRFIVD 599 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + +K + L V + I + + + V V Sbjct: 600 GGVRMQNLIKDLLLVSRIETQVQSFAPTDARTVVADTIRSLETLILEIGAVVTVDPLPIV 659 Query: 109 IDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + ++ NL A V +S F+++ NG F + Sbjct: 660 MADPPQLEQVFTNLIGNAIKYRRPEVPVVVWVSAVRQGGWWEFAVRDNGIGIEPEYFDQI 719 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I V + + ++ E + L Sbjct: 720 FEMFSRLQTKDEYEGTGIGLAIVRKIVARHGGKIWVESTPGKGSIFHFTLP 770 >gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1486 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 27/239 (11%) Query: 2 AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + L + L + + H++ +P+ AI E L + + + +++I Sbjct: 1099 KQQKNAELDRATRLKDEFLANMSHELRTPLNAILGMTEGLQDEIFGQINERQRKSLKIIE 1158 Query: 55 LSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGE 107 + + + ++ +G ++ +I + + AV KR+Q+ + Sbjct: 1159 QAGNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAFVKQQAVKKRIQLDFNIS 1218 Query: 108 KIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFP 161 L R ++++NL A P GGKV + V F++K G Sbjct: 1219 SNILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGENTVRFAVKDTGIGI-AA 1277 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + V L + + S L Sbjct: 1278 ENIPKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSVTSELGVGSCFSVDLP 1336 >gi|145589847|ref|YP_001156444.1| osmosensitive K+ channel signal transduction histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048253|gb|ABP34880.1| osmosensitive K+ channel signal transduction histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 897 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 19/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55 A++ + S L L S I HD+ +P+ A+ + L+ + Q L Sbjct: 654 AQSSTVQIESERLRNSLLSAISHDLRTPLTALVGLTDALEMLDAPLTSEQKEIAVLLREK 713 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKI 109 + + + +A +G+V IE+ I I + + V+ + Sbjct: 714 ALKMSSQVSNLLDMARLQSGAVQLNKQWFLIEEAIGAAIKSVESASEGRHITVTLPPDLP 773 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARF---PE 162 L+ + ++ +NL A+ P+ V+I S ++ +G + Sbjct: 774 LLNFDAVLIERVFINLLENAYKYTPKNSSVSIGASVSSPQSVEIWVQDDGPGLPKGKEED 833 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + GN E I + + + ++ + + + L + Sbjct: 834 IFRKFERGNKEGAISGVGLGLTICRAIIEAHGGKITGKTMAGGGARFTFSLPR 886 >gi|115375338|ref|ZP_01462601.1| developmental histidine kinase sensor [Stigmatella aurantiaca DW4/3-1] gi|115367622|gb|EAU66594.1| developmental histidine kinase sensor [Stigmatella aurantiaca DW4/3-1] Length = 488 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 17/226 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSS 57 M + + + L + + + H++ +PIG I LL E + + + Sbjct: 259 MREALESRDRQLKL---MLAGVAHEVRNPIGGIELFSGLLAEDVRAGSLSEAGGHVTRIQ 315 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL 111 + + + + ++ D K V + L Sbjct: 316 REVAYLQRIVEDFLAFAREQPLARAPVEAPTLLSDACELLAGEAEAKGVALEVDAVPTRL 375 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + + L A + P GG+V ++ + + ++ +G PE +I Sbjct: 376 EADGSLLTAALVNLVKNAIQASPSGGRVQVTGRPADAVYAIQVRDSGPGVPPPE-TERIF 434 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + V + L Sbjct: 435 EPFFTTREKGTGLGLPLARKIIRAHGGELSLSSAPGN-TVFTVTLP 479 >gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis E264] gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 952 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 M K L + + + + H+I +P+ AI +LELL + ++ + Sbjct: 450 MRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSER 509 Query: 53 IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + L D L +I Sbjct: 510 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQL 569 Query: 102 VSW-----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 +S +IL NL A RG Q + + Sbjct: 570 LSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQGDSAIEIWVN 629 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + LA + + + D Sbjct: 630 DTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGT 689 Query: 208 VLSALLE 214 ++ +L Sbjct: 690 TVTVVLP 696 >gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 557 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 26/238 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57 K L + L + + + H++ +P+ +I + LL E + E + I+ Sbjct: 301 KEKNAALEQANHLKSQFLANVTHELRTPLHSIISYGALLLEGYVEGELSSEQEEHIQFMV 360 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWT 105 A + + I + Q+ + D + + Sbjct: 361 RRAEDLSHLVDDMLDLSKIEADRIEMKPEALELSVSLSEVVNQLKPMALNKDLYLNLECD 420 Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP 161 + + + +I+LNL A +GG + + + S+ G Sbjct: 421 PQVPKVLADSHRLRQIVLNLVSNALKFTEKGGVTIHCQHMPERAQVLISVHDTGIGISPA 480 Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + DG+ + L + E I + L Sbjct: 481 ALGYIFEAFRQADGSTTRRFGGTGLGLTIARKLIELQGGEIAVESIPGRGSTFAFTLP 538 >gi|284035316|ref|YP_003385246.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814609|gb|ADB36447.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 746 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 N L+ +L A + HD+ +P+ +I E+L E + Q + S+ Sbjct: 514 NQRLQLAYDELDAF-SYTVSHDLRTPLSSIRCYAEILLEEYGEDFTPDAQALFQKVIDST 572 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKID 110 ++ + + + + + R+++ T + Sbjct: 573 ERMRRLIRHILYYSRMGRTELDTQTINMKQLLEGIREEILVTEKDRSLRIEIGDTPPIVA 632 Query: 111 LSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A G V + + E I+S++ NG + F Sbjct: 633 DPTMALQLFTNLLSNAAKYTQLAHEGIVRVKGHQTDGEVIYSVEDNGIGFDMKQAGKMFD 692 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ ++ + V Sbjct: 693 LFKRLENARNFEGSGVGLAIVKRIVNRHQGKIWFHSEPNQGTVFHVSFP 741 >gi|229132236|ref|ZP_04261092.1| hypothetical protein bcere0014_11740 [Bacillus cereus BDRD-ST196] gi|228651174|gb|EEL07153.1| hypothetical protein bcere0014_11740 [Bacillus cereus BDRD-ST196] Length = 354 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ A L+LL ++ +L Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDACSEKERKLYIDIAINGIE 186 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + L L I + ++ S + Sbjct: 187 QANHVLTDYLTFAKPSIEKEQKLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+F ++P GG + +++ +K G E+ ++ Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 305 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIMSEKGTGTTFLLTFP 349 >gi|253702516|ref|YP_003023705.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251777366|gb|ACT19947.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 342 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 54/217 (24%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + HD+ SP+ I ++ L + + + ++ + S + + Sbjct: 118 FVAMMTHDLKSPLTVIMGYIQALLGEKAKIDPSLHLFLGEMDKSSVKMLSMIDDVLDAYR 177 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------KILL 120 G + DI ++E +R + ++ Sbjct: 178 LEAGLLQIDRRRCDIHPLLEGCSRDGEREAAVHGSCFQSELCDDIPPLELDAKQISRVFA 237 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STID 177 NL A PR G +T S + + G E Sbjct: 238 NLIGNAVKFTPRRGTITFSSEVRDGFLRVQVADTGIGIPPEELPRIFNQYFRAQSAHGFK 297 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E S LL Sbjct: 298 GTGLGLTISKAIVEAHGGSIGVESTAGKGSRFSVLLP 334 >gi|158521367|ref|YP_001529237.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510193|gb|ABW67160.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 591 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 30/242 (12%) Query: 2 AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG-IEDEVMQLI 53 + + + + L ++ L + I H+I +P+ + + +LLDE E+ ++ + Sbjct: 344 TQTLNQQVIETGKLASVGELAAGIAHEINNPVAIMVEEAGWIGDLLDEEEFSENANLEEM 403 Query: 54 RL-----------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 R L F R V + +I Q+ K Sbjct: 404 RRAITQIGTQGRRCKEITHKLLSFARKTDSTIKDVQLNELISEIVQLSGQMAKSSKITIT 463 Query: 103 SWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKIN 154 + + E +++LNL A ++ + G K+ + ++ Sbjct: 464 TDLTPDLPYVTLSPSEMQQVMLNLINNAMDAMEKTGGAIHISTKMSKLEKDHIVIIVEDT 523 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G I + + + + + ++ Sbjct: 524 GPGIPEANLPF-IFNPFFTTKPVGKGTGLGLSICYGIVEKMGGKIDVTSKVGEGTRFRVW 582 Query: 213 LE 214 + Sbjct: 583 IP 584 >gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1420 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + H++ +P+ + +LL ++D ++ + + Sbjct: 1017 AKEEAERANRAK--DQFLATLSHELRTPLSTMLMQAQLLRRGTMDDAKIKRASEAIERST 1074 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------- 110 + + + + + V + VS E+ Sbjct: 1075 KMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDESL 1134 Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +I+ NL A G +V++ ++ + + G E Sbjct: 1135 GPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGI-EAEALQ 1193 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 +I D + + V L + + E + + +L Sbjct: 1194 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAIFTVILP 1249 >gi|299538438|ref|ZP_07051721.1| integral membrane sensor signal transduction histidine kinase [Lysinibacillus fusiformis ZC1] gi|298726025|gb|EFI66617.1| integral membrane sensor signal transduction histidine kinase [Lysinibacillus fusiformis ZC1] Length = 479 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 57/222 (25%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF- 71 L S I H++ +P+ I L+ + + +Q+++ ++ + + + Sbjct: 256 LISNISHEVRTPLTTIKAYLDAISEGICRDEDSLMAYIQIMQSNTDKMSRLVDDLFIHTL 315 Query: 72 ----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILL 120 S D L + Q + I + +R +++ Sbjct: 316 KELGHIPIHLKEQYSQDVLTNILKPIQYYVQTANIHFIRPTRIPNVLILVDADRLEQVIS 375 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES------ 174 NL A +TI+ + GN + Sbjct: 376 NLITNALKHSSHEDTITITTYIENQSLYIQVIDTGNGMLPEDMPFIFERYFRGRQPGSES 435 Query: 175 --TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + +L Sbjct: 436 VIKNEGAGLGLSICQHIMEAHHGSISFHSKPNEGTTFTLILP 477 >gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 951 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + ++ + + + H+I +P+ + ELL ++++ + + S Sbjct: 268 LQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRLDEQQRRFVSSVRRSG 327 Query: 61 IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 L + ++ + + D+ +++ + V+ Sbjct: 328 EALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVENDV 387 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160 + ++L+NL A +G + + + + + G Sbjct: 388 PPVLLGDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKEEHKEEVTVLIRVSDTGIGI-S 446 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I DG + L + E L+ Sbjct: 447 DEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGSTFWFTLK 506 >gi|149920088|ref|ZP_01908561.1| serine/threonine kinase with GAF domain [Plesiocystis pacifica SIR-1] gi|149819031|gb|EDM78468.1| serine/threonine kinase with GAF domain [Plesiocystis pacifica SIR-1] Length = 1874 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 66/240 (27%), Gaps = 28/240 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIR 54 +++ L L +L L S + H+I +P+ I N EL+ E V+ I Sbjct: 1604 RQSLEAQLRQQQRLESLGTLASGVAHEINNPMQGIMNYAELIKLNPTEPRVIIEFAGEID 1663 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----- 109 + ++ + + D + + E Sbjct: 1664 YEANRVATIVRNLLAFSRQEKAADEEVINLAAVVEATLSLIRTLLRSDQIDIEVQIRTDV 1723 Query: 110 ----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGN 156 S++ ++++NL A +L + + ++ G Sbjct: 1724 PEVRCRSQQIQQVVMNLVTNARDALNERFGEYDERKRIELRVEHSARAGWVSILVEDWGG 1783 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ +I D + + + ++ L E + + L Sbjct: 1784 GI-PPQVLPRIFDPFYTTKGRDQGTGLGLAVSHGIVKDHGGELTVETVVGEGTCFTLDLP 1842 >gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] Length = 1386 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + H++ +P+ + +LL ++D ++ + + Sbjct: 983 AKEEAERANRAK--DQFLATLSHELRTPLSTMLMQAQLLRRGTMDDAKIKRASEAIERST 1040 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------- 110 + + + + + V + VS E+ Sbjct: 1041 KMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDESL 1100 Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +I+ NL A G +V++ ++ + + G E Sbjct: 1101 GPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGI-EAEALQ 1159 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 +I D + + V L + + E + + +L Sbjct: 1160 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAIFTVILP 1215 >gi|103486611|ref|YP_616172.1| periplasmic sensor signal transduction histidine kinase [Sphingopyxis alaskensis RB2256] gi|98976688|gb|ABF52839.1| periplasmic sensor signal transduction histidine kinase [Sphingopyxis alaskensis RB2256] Length = 482 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 63/227 (27%), Gaps = 23/227 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMR 68 + + + + H++ +P+ AI +E L + + + R++ + Sbjct: 251 ADRMRSDFVANASHELRTPLAAIIGYVETLQDMNGEDDGATRRRFLSIIEREARRMQQLV 310 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------------GEKIDLS 112 + V++ +V I Q+ + + Sbjct: 311 IDLLSISRVEADRFRRPTAEVDLAAIVRHTITQLQDSESARPKDIVAALGTEAMPMLGDE 370 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD 169 + ++ N+ A G VT+ + S+ G+ + Sbjct: 371 AQLGQLAHNIISNALKYGRPGTPVTVELLREGARVRLSVSDEGDGIAPDHIPRLTERFYR 430 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + V ++ ++ +L + +S Sbjct: 431 VDEARSRSVGGTGLGLAIVKHISERHQGQLHIDSEPGKGTSVSISFP 477 >gi|332712207|ref|ZP_08432135.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L] gi|332349013|gb|EGJ28625.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L] Length = 520 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 +AK D + S +CH+ +P+ I + ELL + ++ I Sbjct: 262 LAKEQEIQ----DFRSQFVSTVCHEFRNPLSVILTAAELLKRYGNLATQEQKQRYLKRIT 317 Query: 55 LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 +S ++ + L + + Sbjct: 318 ISVERMTELMEEVLLIGQAEVGRLEFIPTPMNLEQFCQDLIAELCLDQASRNRIVFTSDG 377 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161 E + I+ NL A P VT + + +F ++ G Sbjct: 378 VYTEVCMDDKLIHYIITNLLTNALKYSPSHEIVTFNLTCDLKQQLVVFRIQDKGIGIAEA 437 Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F TI + V +++ + + + Sbjct: 438 DQKKIFESFYRAKNVGTIQGTGLGLSIVKRCVEQHQGEIELTSEVGVGTTFTIKIP 493 >gi|301057261|ref|ZP_07198387.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448626|gb|EFK12265.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 816 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 M K + M+ + L I HD + + AI EL +++ + +Q + + Sbjct: 432 MEKRL-LQSQKMESIGTLAGGIAHDFNNVLVAIIGFTELSLHAVEKGSEIESDLQAVYTA 490 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------EKID 110 + A +K + + I I + FI + + Sbjct: 491 AHRAKELVKQILTFARLSDEAIRPIQPTVIVKEDLKFIRSSIPTTIDIEQDLRSDSFIMG 550 Query: 111 LSRERAKILLNLFMVAHA----------------SLPRGGKVTISVQDSKNENIFSLKIN 154 + + ++++NL A L + ++ Sbjct: 551 NATQIHQVMMNLCTNAAQSMEEKGGRLRVVLEDTHLTPDRPKHLLDLKPGEYITITVSDT 610 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + I + + + + V + R+ + + S Sbjct: 611 GTGI-PQDIIGSIFEPYFTTKGPGEGTGMGLAMVHGIVRAYGGRIFVDSTPEIGTTFSLY 669 Query: 213 LE 214 L Sbjct: 670 LP 671 >gi|326315102|ref|YP_004232774.1| ATP-binding region ATPase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371938|gb|ADX44207.1| ATP-binding region ATPase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 607 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 58/234 (24%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN------SLELLDEVGIEDEVMQL 52 + + + L L + + + H++ P+ A+ +L+ E +QL Sbjct: 369 LRGTRDAAVQAGKLAVLGQMAAGMSHELNQPLAALQTLSDNAIALDRQGRREDVAENLQL 428 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSW 104 I + ++ ++ V + D +A Sbjct: 429 IGQLAARMGRIVRQLKSFVRKEAPVLQPCRVRDALDHALLLLAQRCTAVQARIDVQPFDT 488 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPE 162 ++L+NL ++ + + G PE Sbjct: 489 GLCVRADPTRLEQVLVNLLRNGLDAVQDRPVREVRFAPAAEDGWVRLRVSDTGGGI-APE 547 Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 ++ + + + ++ L E + + L Sbjct: 548 ARGRLFEPFFTTKAGEGLGLGLAVSRIIVEGMGGTLTVEDVPEGGGAGFTVTLP 601 >gi|229084555|ref|ZP_04216826.1| hypothetical protein bcere0022_11900 [Bacillus cereus Rock3-44] gi|228698758|gb|EEL51472.1| hypothetical protein bcere0022_11900 [Bacillus cereus Rock3-44] Length = 417 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKLALAGRIAAGIAHEVRNPLTTVRGYLQFLQEGVSPSNKELFQNLLIPELDRA 245 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------- 109 + + + + + + E Sbjct: 246 NSIITKFLSISKAHEFKREPFPINTFLCEYIQQLLASEVFLHNISIEYHLSSELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAKSDKPLSIQITSHRLDNFARITFQDNGIGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L ++ + Sbjct: 365 DPFFSTKDAGTGLGLSVTKKIIQNHNGTLKVSSNEN-GTTFIISIP 409 >gi|227530486|ref|ZP_03960535.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540] gi|227349591|gb|EEJ39882.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540] Length = 502 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/236 (8%), Positives = 62/236 (26%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50 M + + +D + + H++ +P+ I LE+L G +D + Sbjct: 247 MFNEMLDRMQRYIDQQSQFVGDVSHELRTPVAIIQGHLEMLQRWGKDDPQVLAESLNASL 306 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + ++ + + ++ + + + + + + Sbjct: 307 AETKRMKNLVQEMLDLSRAEQVEINFRNQRTVVNDVVHQVFNNFKMLYPEFTFTLDDDLH 366 Query: 108 KID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L+ L A ++ IS+ N ++ G + Sbjct: 367 SPVISDVYRDHLEQVLVILCDNAIKYSQDRKEIHISLSRGMNTVEIGVQDFGEGIAPEDI 426 Query: 164 ---FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + L + E + +L Sbjct: 427 KKVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSLGAGSIFRIILP 482 >gi|226312204|ref|YP_002772098.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226095152|dbj|BAH43594.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 453 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 67/223 (30%), Gaps = 18/223 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 +L L S I H++ +P+ + +E + + + + R + ++ + Sbjct: 218 HQEELRKRLTSDIAHELRTPLNTLLAQVEGMIDGIWEATPKNLDSTRSEVLRLSRLVRDL 277 Query: 68 -----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 ++ + + + + V+ + + A Sbjct: 278 DQVIQVESGSLQMRSEEVELREVVKEVTESMSATFARAQVNFHFKGDHAVWITGDRQRLA 337 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 +I+ NL A P GG+V ++V +K +G + F + G+ Sbjct: 338 QIVANLLTNACKHTPAGGEVVVTVDKPSTMVRLQVKDSGTGIDQKDLPYVFERFYRGDRS 397 Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + +K + + ++ L Sbjct: 398 RARERGGAGLGLTIVKGIVEAHKGIISLDSSVGEGTTITILFP 440 >gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] Length = 948 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 68/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYMPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + V + ++ G Sbjct: 572 EPDVPLTLHGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVCLVGDYLTIRVRDTGVGIPA 630 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDTEPGMGSQFTIRIP 689 >gi|153838818|ref|ZP_01991485.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ3810] gi|149747748|gb|EDM58644.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ3810] gi|328471667|gb|EGF42544.1| nitrogen regulation protein NR(II) [Vibrio parahaemolyticus 10329] Length = 348 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQNSIIIERDYDPSLPEILMDA 235 Query: 116 AKILLNLFM---------------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + I + K + NG Sbjct: 236 DQIEQAMLNIVSNAAQILAHQEHGNITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347 >gi|94265291|ref|ZP_01289049.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454225|gb|EAT04543.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 564 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 64/243 (26%), Gaps = 31/243 (12%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----R 54 + + L + + AL L I HD + + I + ++ E ++ Sbjct: 178 RQQMETQLFQARKMEALGILAGGIAHDFNNILTPIVINTQMARMEVSEHPTLEQNLKQIE 237 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----- 109 ++ A ++ + I LG + F+ + ++ Sbjct: 238 QAAERAGGLIRQILDFNRQGKHDPRPIHLGPAIKEAMKFLRATLAPNIEMEYKQRAVNDV 297 Query: 110 --DLSRERAKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKI 153 + ++++NL + A ++ V + + Sbjct: 298 VAGDPTQIIQVIMNLVLNAAHAMREDGGRLEIVLENDEKGPPVPPPDTLAGGWLRLVVSD 357 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G PE +I D + + + V + + + Sbjct: 358 TGPGI-APENLNRIFDPFFTTKGKGEGSGMGLAVVHGIVSRHGGTIAAYSEPGQGTSFEI 416 Query: 212 LLE 214 +L Sbjct: 417 MLP 419 >gi|13470631|ref|NP_102200.1| nitrogen reguration protein nirB protein [Mesorhizobium loti MAFF303099] gi|14021373|dbj|BAB47986.1| nitrogen reguration protein; NirB [Mesorhizobium loti MAFF303099] Length = 380 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51 MA I ++ + V L + + H+I +P+ I + +LL+ + + + Sbjct: 123 MADKIDRQMTHRGAARSVTGLAAMLAHEIKNPLSGIRGAAQLLELSASDEDRALTRLITD 182 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EK 108 F V+ + L ++ + ++ A R+ + Sbjct: 183 ETDRIVSLVDRMEVFSDERPIDRYPVNIHVVLDHVKAIAKNGFAKKIRILEDYDPSLPPV 242 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLK 152 + ++ LNL A ++ V + F ++ Sbjct: 243 FANRDQLIQVFLNLVKNAAEAIGTDPHGEIVLSTAFRPGIRVSVPGTQDRVSLPLEFCVR 302 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG + + D + + + + V + E+ + E L Sbjct: 303 DNGPGV-SEDILPILFDPFITTKPNGSGLGLALVAKIVGEHGGIIECESTP-RGTTFRIL 360 Query: 213 LE 214 + Sbjct: 361 MP 362 >gi|116620225|ref|YP_822381.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223387|gb|ABJ82096.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 556 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 52/230 (22%), Gaps = 25/230 (10%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRL 64 + L AL S + H++ +P+ I ++ + L + + +V + L Sbjct: 320 RAQRLAALQMEFVSGVSHELRTPLAVIGSAADNLADGVVASDAQVRRYGALIRGEGRRLT 379 Query: 65 KFMRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + Y + IE+ +R Sbjct: 380 EMVEQVLSYASLQSGKKRVERRAVEIAGVIDGAIEACAGQIEETRCAVEREIPEGLPRVA 439 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + NL A G V I + G + Sbjct: 440 ADEASLIHCIANLLGNALKYGEPGHHVRIVAATQPGSVEIRVSDTGFGIDAEDLPHIFDA 499 Query: 170 GNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + V + + + E + L Sbjct: 500 FYRGRSVAEGTIRGTGLGLSLVRRIVEAHDGTVNVESTAGMGSCFTLRLP 549 >gi|240850723|ref|YP_002972123.1| sensor histidine kinase [Bartonella grahamii as4aup] gi|240267846|gb|ACS51434.1| sensor histidine kinase [Bartonella grahamii as4aup] Length = 844 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 61/241 (25%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 457 EDKMMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSSDPAHADLINIKNNAN 516 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111 A ++ + + + I + K + Sbjct: 517 RAAALVQQLLAFSRKQTLRPEEVDFTEFLSDIRNLIVPLLGNNIQLKIIYGRDLWSVEVD 576 Query: 112 SRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156 ++++NL + A ++ + + ++ G Sbjct: 577 QASFQRVIMNLVINARDAMLDGGIVTIATNNITKQQSAEFNHLGLAIGEYVQLTISDTGA 636 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + ++ + E + L Sbjct: 637 GISAA-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQSGGYIYCESKEGEGATFHIFLP 695 Query: 215 K 215 + Sbjct: 696 R 696 >gi|229018656|ref|ZP_04175509.1| hypothetical protein bcere0030_31760 [Bacillus cereus AH1273] gi|229024899|ref|ZP_04181329.1| hypothetical protein bcere0029_32050 [Bacillus cereus AH1272] gi|228736371|gb|EEL86936.1| hypothetical protein bcere0029_32050 [Bacillus cereus AH1272] gi|228742660|gb|EEL92807.1| hypothetical protein bcere0030_31760 [Bacillus cereus AH1273] Length = 532 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 73/221 (33%), Gaps = 11/221 (4%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAII 62 + +++ V L + + H + +P+ I ++LL + G + E + LI S Sbjct: 298 ELLKKSDTLNAVGQLAAGVAHKVRNPLTVIKGFMQLLQQEVGKDKECLSLILSEISSIEK 357 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK---IDLSRE 114 ++ +V L I + I + R+ ++ E + Sbjct: 358 VIQEFLSIAKPNAAVFEPKNLCTILDNVVDLISTQAIMKNIRITLNVDAENLLVECCEIQ 417 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNVE 173 ++ ++ + ++ G ++ ISV+ + S+ G E+ ++ + Sbjct: 418 LKQVFYSILQNSIEAIQNGQEIIISVKKHNSTEIKISILDKGIGI-PSERIKRLGEPFYS 476 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + ++ Sbjct: 477 TKEKGTGVGLMMSYRIIESHGGKISIKSQVGKGTTVTLFFP 517 >gi|229136592|ref|ZP_04265275.1| hypothetical protein bcere0014_54180 [Bacillus cereus BDRD-ST196] gi|228646865|gb|EEL03017.1| hypothetical protein bcere0014_54180 [Bacillus cereus BDRD-ST196] Length = 418 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 70/226 (30%), Gaps = 16/226 (7%) Query: 4 NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 I + + + + L + I H+I +P+ + +LL+E +D+ ++++ L Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEK 108 + + + + I + + K+ + + Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + L N+ ++ GG + I++Q K+ + + G + +I Sbjct: 313 NANTEKLKICLTNIIQNGIEAMKNGGVLQINIQKIKDNIVIDIIDTGIGMSSQQIK-RIA 371 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEVESELGKGTHFSITIP 417 >gi|229174303|ref|ZP_04301836.1| hypothetical protein bcere0006_33960 [Bacillus cereus MM3] gi|228609160|gb|EEK66449.1| hypothetical protein bcere0006_33960 [Bacillus cereus MM3] Length = 510 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL ++ D ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINAEQKWYIDVMLSE 334 Query: 53 IRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 I + + + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQALIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + +N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLENTFILIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|148658249|ref|YP_001278454.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus sp. RS-1] gi|148570359|gb|ABQ92504.1| signal transduction histidine kinase, nitrogen specific, NtrB [Roseiflexus sp. RS-1] Length = 516 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + + L A+ L + I H++ +P+ AI L L E ++L Sbjct: 272 QTQLVRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCAPETPNQHFLRLAEEEIE 331 Query: 59 SA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 R +VD + + + + + V + + Sbjct: 332 RIVRVLERLRDLYRPRADVFTNVDVNELIESVLLLTGKQLERSRIRVVRELTPNLPTIQG 391 Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFT 165 + ++LLNL + A ++P GG + + + ++ G PE+ T Sbjct: 392 VADQLKQVLLNLVLNAAEAMPNGGILHVQTHRAHLASGQEAIAIAITDTGVGI-PPEQLT 450 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I DG + + Y + + + + I ++ Sbjct: 451 RIFDGLHTTKERGMGLGLYTSKAIVERHLGSISVQSIPGEGTTFEIMVP 499 >gi|120406122|ref|YP_955951.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119958940|gb|ABM15945.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] Length = 503 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ I EL + D +M I S + ++ + L Sbjct: 271 SHELRTPLTTIRGFAELYRQGAARDVEMLMSRIESESRRMGLLVEDLLLLARLDAQRPLD 330 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----------RERAKILLNLFMVAHAS 129 D+ + D + + + + + ++L NL A Sbjct: 331 RHRVDLLTLATDAVHDAQSIAPKRSIKMEVFDGPGTPEVLGDEPRLRQVLSNLVANALQH 390 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V N+ + + G R + F + + + Sbjct: 391 TPETAAVTVRVGTDGNDAVVEVCDEGPGMRPEDAQRVFERFYRTDTSRARASGGTGLGLS 450 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + R+ L + Sbjct: 451 IVDSLVYAHGGRVSVTTAPGQGSRFRVSLPR 481 >gi|85858057|ref|YP_460259.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721148|gb|ABC76091.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 725 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 73/241 (30%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIED---EVMQLIRL 55 + F M+ + L I HD + +GAI E+ L + ++++ Sbjct: 343 EKQLFRAQKMEAIGTLAGGIAHDFNNILGAIIGYAEITLHGLYDSPWRPKLERIIRISER 402 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + L F R + V + + + +++ + ++ K + + Sbjct: 403 AKDLVQQILTFSRHSDHEHKPVQPALLIKESLKLLRSSLPATIEIRQDIAATKSTIMADP 462 Query: 116 ---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKINGN 156 +I++NL A ++ V + + + +++ G Sbjct: 463 TRIHQIMMNLCTNAAHAMRETGGVLEVSLKNRDIGAAEIVPDFQLEPGSYVVLTIRDTGQ 522 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ +I + + + + V + + + + + L Sbjct: 523 GI-PPDIQNRIFEPFFTTKSPGEGTGLGLSVVYGIVKKYNGMVTVDSVPRKGATFQVFLP 581 Query: 215 K 215 + Sbjct: 582 R 582 >gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1364 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVVTLEK 872 >gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] Length = 1018 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 49/242 (20%), Gaps = 33/242 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59 K + + S + H++ +P+ +I +LL + + + Sbjct: 614 KEQAERANQAK--SQFLSSMSHELRTPLNSILGFAQLLSTSRREPLSPRQQGFVEHIRDA 671 Query: 60 AIIRLKFMRLAFGYTGSV---------------DSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + + + + Sbjct: 672 GQHLLSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARERDVQLLETLGDD 731 Query: 105 TGEKIDLSRERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNL 157 +ILLNL A L R + ++ G Sbjct: 732 PLWVCVDLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPVCLGIAISDTGIG 791 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ ++ I+ I L + E + Sbjct: 792 I-PADRQHRLFRPFERLGQENGPIEGTGIGLMITKELVERMGGEIRFESREGEGTTFFVF 850 Query: 213 LE 214 L Sbjct: 851 LP 852 >gi|197124170|ref|YP_002136121.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196174019|gb|ACG74992.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 592 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 60/248 (24%), Gaps = 35/248 (14%) Query: 1 MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELLDEVGIED--- 47 +A L + L A+ S H++ +P+ A+ +LE + V + Sbjct: 328 LAHRAAQALENARLYGEAQAAVAARDEFLSIASHELRTPLTALRLALENMRRVASREALE 387 Query: 48 ------------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVI 90 + + L R+ G + LG QV Sbjct: 388 SLPAAYVERVLATAERQGQRLEKLVAALLDVSRIHMGRLELELEDVDLGHAVSEAVAQVE 447 Query: 91 EDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 ++ +V V + R +++ NL A Sbjct: 448 DEAAQAGSQVTVQGEPVRGRWDRLRISQVATNLLSNAVKYGAGKPVEVSFGTRDGR-AYL 506 Query: 150 SLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 ++ G + F + + Y V + + + E Sbjct: 507 RVRDQGIGIDPADQRQIFERFERAVSSRNYGGLGLGLYIVKRIVEAHGGAVRVESAPGEG 566 Query: 207 VVLSALLE 214 L Sbjct: 567 AAFEVTLP 574 >gi|119900099|ref|YP_935312.1| hydrogen uptake histidine-kinase [Azoarcus sp. BH72] gi|119672512|emb|CAL96426.1| hydrogen uptake histidine-kinase [Azoarcus sp. BH72] Length = 461 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/264 (8%), Positives = 60/264 (22%), Gaps = 50/264 (18%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------------- 42 + + L S + +L L + + H++ +PI I ++ L Sbjct: 192 LKRTQQQLLHSEKMASLGRLVAGVAHELNNPISFILGNVHALKRYAGRLESYLGAIHGGD 251 Query: 43 ---------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 + D ++ + +F + + D Sbjct: 252 SAEHLAQLRTRLRIDRLLGDLPALIDGTIEGAERTRDIVDGLKRFSAIDREVNEAFDLAE 311 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTIS 139 + + V+ S + + ++++NL A + + + Sbjct: 312 VIERAVSWVRRGARDSFHVRFSMPRKIPMTGSAGQMQQVMMNLVQNAWDATAEQPEQWLD 371 Query: 140 V--------QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLA 190 + S NG + + + Sbjct: 372 ILAEVEAGTDTGGARVRVSFHDNGPGIAAQHLPQVFDPFFSTKQVGKGTGLGLSISYGII 431 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + R+ + + L Sbjct: 432 ERHGGRISAANHPAGGAIFTVELP 455 >gi|86160142|ref|YP_466927.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776653|gb|ABC83490.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 592 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/248 (10%), Positives = 59/248 (23%), Gaps = 35/248 (14%) Query: 1 MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELLDE-------- 42 +A L + L A+ S H++ +P+ A+ +LE + Sbjct: 328 LAHRAAQALENARLYGEAQAAVAARDEFLSIASHELRTPLTALRLALENMRRVASREALE 387 Query: 43 ---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIE-QVI 90 + V+ + + VD +G+ Q+ Sbjct: 388 SLPAAYVERVLATAERQGQRLEKLVAALLDVSRIHMGRLELDLEEVDLGHSVGEAVAQLE 447 Query: 91 EDFIAVDKRVQVSW-TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 ++ +V VS +++ NL A Sbjct: 448 DEAAQAGSQVTVSGAPVHGRWDRLRISQVATNLLSNAVKYGAGKPVEVSYGARDGR-AFL 506 Query: 150 SLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 ++ +G + F + + Y V + + + E Sbjct: 507 RVRDHGIGIDAADQRQIFERFERAVSSRNYGGLGLGLYIVKRIVEAHGGTVRVESAPGEG 566 Query: 207 VVLSALLE 214 L Sbjct: 567 ADFEVTLP 574 >gi|319892475|ref|YP_004149350.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus pseudintermedius HKU10-03] gi|317162171|gb|ADV05714.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus pseudintermedius HKU10-03] gi|323464422|gb|ADX76575.1| signal transduction histidine kinase SsrB [Staphylococcus pseudintermedius ED99] Length = 585 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 61/219 (27%), Gaps = 23/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + +E + ++ S + + Sbjct: 359 ASVSHELRTPISLLQGYTESIVDGVVTEPEEINEFLTVVLDESKRLSRLVNELLNVAKMD 418 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLSRERAKILLN 121 T + + L + A + + + + + ++L N Sbjct: 419 AEGLNVTQELQPMQDLVRKMAMKYRQQAQELNLTLDFQMDGEMASLWYYDFDRMEQVLTN 478 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID- 177 L A G ++I + I +++ G F + + Sbjct: 479 LVDNASRYTQPGDTISIKATADHDHQILTIEDTGVGIAPQHLEKLFERFYKVDSARKRGS 538 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ + + + E D L K Sbjct: 539 QGTGLGLFITRMIVNAHGGHIRVESELDKGTKFIISLPK 577 >gi|281355428|ref|ZP_06241922.1| multi-sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281318308|gb|EFB02328.1| multi-sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 596 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 59/220 (26%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIR--------- 63 + + H+I +P+ I ++E L + I + MQ+I + S Sbjct: 371 FVANVSHEIKTPLTVIRGAVETLRDGAIHEPESAERFMQIIEMHSERLNALVQDILSLSQ 430 Query: 64 -LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119 V+ + ++ + V T ++ + + + Sbjct: 431 LECRAVGDGYNMVPVNVSTPISTAVELAQARADAAGLKLVVETSADPEVLIDVQLVEQAI 490 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VES 174 LNL A +V I+ ++ E + + +G F + + Sbjct: 491 LNLIDNAIKHSGEKSEVRITAREESGEAVIEVADHGCGIPAEHLPRVFERFYRVDKARSR 550 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + L Sbjct: 551 KAGGTGLGLAIVKHVMQLHHGSAEVHSTVGQGSTFTLRLP 590 >gi|228938670|ref|ZP_04101275.1| hypothetical protein bthur0008_13340 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971551|ref|ZP_04132175.1| hypothetical protein bthur0003_13290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788210|gb|EEM36165.1| hypothetical protein bthur0003_13290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821046|gb|EEM67066.1| hypothetical protein bthur0008_13340 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939177|gb|AEA15073.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 423 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSTSNQELFKNLLIPELDRA 245 Query: 61 IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NNIITKFLAVSKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|228978162|ref|ZP_04138540.1| hypothetical protein bthur0002_13650 [Bacillus thuringiensis Bt407] gi|228781634|gb|EEM29834.1| hypothetical protein bthur0002_13650 [Bacillus thuringiensis Bt407] Length = 429 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSTSNQELFKNLLIPELDRA 251 Query: 61 IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 252 NNIITKFLAVSKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 311 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 370 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 415 >gi|239628829|ref|ZP_04671860.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518975|gb|EEQ58841.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 468 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 58/235 (24%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M+ + + + HD SP+ +I LE + + + ++ + + Sbjct: 233 MSDELNKMEEYQK---NFIANVSHDFRSPLTSIKGYLEAILDGTIPEDMYEKYLSRVISE 289 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105 + + M + + D + D E Sbjct: 290 TKRLHKLTESMLTLNSLDAKGYLSRTNFDINRVIKDTAASFEGTCDAKNISFDLTFSDSI 349 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPE 162 + ++L NL A + I + S+K G + Sbjct: 350 QMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASGRYEKIFVSVKDTGIGIPKDSQKK 409 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ D + V + + + + L + Sbjct: 410 IWERFYKTDLSRGKDKKGTGLGLSIVKEIVQSHGENIDVVSTEGVGTEFIFSLPR 464 >gi|218779128|ref|YP_002430446.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760512|gb|ACL02978.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 526 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 76/231 (32%), Gaps = 21/231 (9%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIH----NSLELLD--EVGIEDEVMQLIRL 55 + S L A+ L + + H++ +PI I LE + + ++M + Sbjct: 279 REALLIQSHKLRAVGTLTAGVAHELNNPINNIMITGHMFLEDYESTDDEERIDMMNDVVN 338 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-----GE 107 + A + + +GS + + + ++ + ++ + ++ Sbjct: 339 EANRAKAIIANLLDFARESGSQLAPLDMAEMLKDTIALASNRLKRSKINIDFSSTDKLPR 398 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165 S++ ++ LNL + A + GG +T++ D + + G + Sbjct: 399 VHGDSQQLRQVFLNLILNAIDASQSGGNITVTVLPADEPHYIAVKVIDYGTGI-PKHILS 457 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + ++ ++ + H + L Sbjct: 458 SIFDPFFTTKPQGKGTGLGLSMSQGIITKHGGQIRVFSQEGHGTTFTVTLP 508 >gi|167755207|ref|ZP_02427334.1| hypothetical protein CLORAM_00712 [Clostridium ramosum DSM 1402] gi|167705257|gb|EDS19836.1| hypothetical protein CLORAM_00712 [Clostridium ramosum DSM 1402] Length = 486 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 61/234 (26%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + + L + L I HD+ +P+ +I L ++ D + +I+ S Sbjct: 246 KEEARLQVEREKLKSTLLRSISHDLRTPLTSIAGGANFLVNNLDIVESDTSLNIIQDISK 305 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------------IEDFIAVDKRVQVSWT 105 A+ + T + + +V + Sbjct: 306 EAMRLNGMVENLLNMTRIQEGNFKINKKLEVVDDIISTAVSAITNRKENHELVVKETKDI 365 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+NL A P KV + N IF + NG + Sbjct: 366 ILFPCDAQLIVQVLVNLLDNAFKHTPDASKVMLKAFVRNNNIIFQVIDNGKGIEIKQLNH 425 Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D S + + +K + D L Sbjct: 426 IFDDFFTTSLDNGDHKRGIGLGLAICKAIVEAHKGEIKAFNNDLGGATFELSLP 479 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 69/235 (29%), Gaps = 20/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K S L + + I H++ +P+ + +L LL + + ++ +++ Sbjct: 323 LIKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDLPDAEEIADIATDIE 382 Query: 61 I-------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 K + S+ L +A +K + + + Sbjct: 383 DSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQVMAHEKNLTIETEID 442 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165 I++ + ++ L + ++ I ++ ++ F ++ G + Sbjct: 443 DIEVFADPIRLKQILLNLLGNAIKFTENGFIKVKIKPMAHQVCFFVEDCGCGIDEKDVPF 502 Query: 166 QIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + L + ++ + + V S + K Sbjct: 503 IFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQSLLGKGSVFSFSIPK 557 >gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium sp. ORS278] Length = 610 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56 +A++ + + + H++ +P+ AI E+L + + +L Sbjct: 341 LARSAAERADAAK--TRFLATMSHELRTPLNAIIGFSEMLMQEQVLVLNAARRREYAQLI 398 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101 + S L + + L + + Sbjct: 399 NDSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLALRARENGVDLAADA 458 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 R +I++NL A RGG+VT+S + + G Sbjct: 459 PHDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAGVDGARLLLRITDTGVGIAAD 518 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + V L + + E D ++ L Sbjct: 519 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESKLDEGTTVTIALP 576 >gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 601 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 65/227 (28%), Gaps = 20/227 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI +L+E ++E Q I + + Sbjct: 375 AKEKAEEADRLKSAFL--ANMSHEIRTPLNAIVGFSSMLEEAEDQEEKHQYITIIEDNNK 432 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + + L Q+ + Sbjct: 433 LLLQLISDILDLSKIEAGTFDIIPERVNAKQLCNDLFQAMQMKTSPQVELRLKDNLPELT 492 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++LLN A G +TI Q NE FS++ G PEK I Sbjct: 493 FTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQIDGNEVKFSVQDTGMGI-EPEKQEAI 550 Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 V S I + + + ++ E Sbjct: 551 FTRFVKLNSFIPGTGLGLPICQSIVTQLGGKIGVESEPGRGACFWFT 597 >gi|154245239|ref|YP_001416197.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159324|gb|ABS66540.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 690 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 +A + S L A+ + + + H+I +P+ I +L++ + LI Sbjct: 443 LAATQRQLVMSEKLAAIGEITAGVAHEINNPVAVIQGNLDVARDVLGPAAAPVRTEFNLI 502 Query: 54 RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 I + + + V +GD +++ + + V Sbjct: 503 DQQVHRITIIVSKLLQFARPAEFAGHLEPVAPSEVIGDALVLVQYLLGRGEIAVVRDESA 562 Query: 108 KI---DLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 E ++L+NL + A ++P+ + + + + ++ G Sbjct: 563 TRLVLMNRVELQQVLINLMVNAAHAMPQGGTLTLRTRDTAHNGRAGVSIAVADTGPGI-A 621 Query: 161 PEKFTQIVDGNVESTIDS-----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ D + + L + L Sbjct: 622 PEHVARVFDPFFTTKPQGGDKAGTGLGLSISFTLVDRAGGTMSLASPPGGGATFVLWLP 680 >gi|134300143|ref|YP_001113639.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052843|gb|ABO50814.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 460 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 14/225 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49 M K I L ++LV + + I H+I +P+ + L+L ++ Sbjct: 226 MEKEIK-KLDRLNLVGQVAAGIGHEIRNPLTTVRGFLQLFQTKKESCDIYKEQFMLMIEE 284 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + + + Q + + + Sbjct: 285 LDRANSIITEFLTLARNKPERVEMKNLNSIVTKILPLLQAQALKEEKYVYAVLDKVPDLL 344 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E +I+LNL ++ RGG +TI + I S++ G PE +I Sbjct: 345 LDENEIRQIILNLIRNGLDAMSRGGNITIRTYIQEPHTILSIRDEGEGI-KPEVLEKIGT 403 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + + + + + Sbjct: 404 PFYTTKDSGTGLGLAICYGIAERHNASVDVKTGPN-GTIFLIKFP 447 >gi|330505537|ref|YP_004382406.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] gi|328919823|gb|AEB60654.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] Length = 640 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 +I L S + H++ +P+ AI SL L+ + +++++ + + Sbjct: 401 SDISERKRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQAMRQMLEIAQSN 460 Query: 57 SMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----T 105 S + + + L L A +VQ+ Sbjct: 461 SQRLRHLIDDLLDMDKLVAGKMQFDLQPLQLRPLLQQALRNNQPYAERHQVQLQLLASAD 520 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ ++L NL A G V ++ ++ S++ G K Sbjct: 521 CQVMADAQRLEQVLANLLSNAAKFSAAGQTVELAAGLAQGWVRISVRDYGQGIAEDFKPR 580 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ + + L Sbjct: 581 IFSKFAQADAGDTRRQGGTGLGLAISKEIIEHMGGRIGFDSTEGQGSTFWLSLP 634 >gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 629 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 15/235 (6%), Positives = 60/235 (25%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50 + + + + + L + + + H+I +P+ AI LL ++ + + Sbjct: 383 LKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYMEDAKEREYYI 442 Query: 51 QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 LI ++ + + + + + ++ Sbjct: 443 SLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVPEGVTLKK 502 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARF 160 + + ++ +I L + +L + + + ++ S+ G Sbjct: 503 RYPASPCLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKISVTDTGRGIPQ 562 Query: 161 PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + Sbjct: 563 EKLGVIFERFEKADSYIQGAGLGLSICKSIIEQMNGTIEVASVLGEGSTFTVTFP 617 >gi|256788795|ref|ZP_05527226.1| two-component sensor [Streptomyces lividans TK24] gi|289772689|ref|ZP_06532067.1| two-component sensor [Streptomyces lividans TK24] gi|289702888|gb|EFD70317.1| two-component sensor [Streptomyces lividans TK24] Length = 379 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 51/234 (21%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 138 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 197 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G Q R + Sbjct: 198 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVASGLEADRFLLRLAQPL 257 Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 DL + ++L NL A + ++ G Sbjct: 258 PDLWADPDKVDQVLSNLLENAVRHGEGTVTIDVTPTASPREGEDTGTSVTVSDEGAGIPE 317 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + L Sbjct: 318 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPGGGAEFRFTLP 371 >gi|167758970|ref|ZP_02431097.1| hypothetical protein CLOSCI_01316 [Clostridium scindens ATCC 35704] gi|167663377|gb|EDS07507.1| hypothetical protein CLOSCI_01316 [Clostridium scindens ATCC 35704] Length = 896 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRL 55 K L L A L I HD+ +P+ +I + E L + Sbjct: 659 KESAVRLQKEQLRANLLRSISHDLRTPLTSISGNAETLLGNGEQIKTEQKNAIYKDIYDD 718 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--------DKRVQVSWTGE 107 S + + + GS++ + +E VI + + + V Sbjct: 719 SMWLINLVENLLSVTRIENGSMELNLQGEIMEDVIMEALRHVNRRGKEQEIEVDCDEFLM 778 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 R ++++NL A P ++I + + + S+ NG +K Sbjct: 779 VRVDVRLMMQVIINLVDNAIKYTPPLSIISIKAKRFGDRAVISVSDNGPGIPDDQKEELF 838 Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + L+ Sbjct: 839 RMFYTVNHSVADGRRGMGLGLTLCQAIVGAHGSKIKVYDNVPQGTIFRFELK 890 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 57/244 (23%), Gaps = 33/244 (13%) Query: 2 AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L A SR + H+I +P+ A+ ELL + + + + Sbjct: 668 EKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELLLDTDLNSTQREYL 727 Query: 54 RLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVD 97 + S + + G D + + + Sbjct: 728 TMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTMRSLAVRAHHKHLELA 787 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKI 153 + + +I++NL A G V ++ + F ++ Sbjct: 788 FHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEGEIVLDVNYDFQSKNELQLHFVVRD 847 Query: 154 NGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G ++ D ++ + L ++ Sbjct: 848 TGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEMMGGKIWVNSEVGKGSE 907 Query: 209 LSAL 212 Sbjct: 908 FHFT 911 >gi|115378066|ref|ZP_01465244.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115364905|gb|EAU63962.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 688 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 29/241 (12%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45 K + L+ + + AL L + H+I +P+ I ++L L+E + Sbjct: 292 RKTLETRLAVADRMAALGTLAGGVAHEINNPLTFITSNLLYLEESLGPVAADQLPHIEEM 351 Query: 46 EDEVMQLIRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 V + F R+ VD GL + + R+ Sbjct: 352 RKAVFDAREGAHRVRTIVRELRTFSRVEDARRVPVDVHRGLDFAISMAAQELRPRARLVR 411 Query: 103 SWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKING 155 + ++ LNL + A ++P G +V + + ++ G Sbjct: 412 DYGQIPAVLGDETRLGQVFLNLLVNAAQAIPEGNPGEHTVTVHTHLSESGQVQVEIRDTG 471 Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + PE +I + + + + + + V + LL Sbjct: 472 SGM-RPEVLARIFEPFFTTKPVGVGTGLGLSICHGIVAAHGGSISARSELGKGTVFTVLL 530 Query: 214 E 214 Sbjct: 531 P 531 >gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 699 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/250 (8%), Positives = 59/250 (23%), Gaps = 39/250 (15%) Query: 4 NICFNLSSMDLVA------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 + S L A + + H+I +P+ A+ +LLD+ ++ + Q Sbjct: 192 RREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSQQRQ 251 Query: 52 LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + S + + D + +++ Sbjct: 252 YVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLE 311 Query: 101 QVSWTGEKIDL-----SRERAKILLNLFMVAHAS------LPRGGKVTISVQDSKNENIF 149 V + ++L+NL A + + + Sbjct: 312 FVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEGRVMVELACLPAAPPYPGPFFRC 371 Query: 150 SLKINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ G ++ D ++ + L ++ + Sbjct: 372 TVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREG 431 Query: 205 HNVVLSALLE 214 + + Sbjct: 432 GGSTFTMEIP 441 >gi|21220093|ref|NP_625872.1| two-component sensor [Streptomyces coelicolor A3(2)] gi|3581851|emb|CAA20807.1| putative two-component sensor [Streptomyces coelicolor A3(2)] Length = 379 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 51/234 (21%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 138 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 197 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G Q R + Sbjct: 198 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVASGLEADRFLLRLAQPL 257 Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 DL + ++L NL A + ++ G Sbjct: 258 PDLWADPDKVDQVLSNLLENAVRHGEGTVTIDVTPTASPREGEDTGTSVTVSDEGAGIPE 317 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + L Sbjct: 318 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPGGGAEFRFTLP 371 >gi|229084949|ref|ZP_04217201.1| hypothetical protein bcere0022_15730 [Bacillus cereus Rock3-44] gi|228698265|gb|EEL50998.1| hypothetical protein bcere0022_15730 [Bacillus cereus Rock3-44] Length = 330 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA + + S + H+I SP+ +I L + + +I Sbjct: 95 MADELNTM---ERMRQEFVSNVSHEIQSPLTSIKGFALALQDDYLTDEKRKHYLTIIETE 151 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + +K +++ + EK+ Sbjct: 152 TTRLSKLSHNLLKLTLLESEEYVPERVTYRLDQQLKQIVLNCEPLWSEKEIELELSLEKM 211 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI + + + ++ G + Sbjct: 212 YITADEESMSQVWINLLSNSIKFTPNGGTITIQLMQNGEQAEVRIRDTGIGISEEQRGHI 271 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 272 FERFYKADSSRNRAFGGSGLGLAIVKKVIDLHQGEIQVESVVGDGTEFIISIP 324 >gi|229815014|ref|ZP_04445352.1| hypothetical protein COLINT_02057 [Collinsella intestinalis DSM 13280] gi|229809501|gb|EEP45265.1| hypothetical protein COLINT_02057 [Collinsella intestinalis DSM 13280] Length = 911 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSM 58 + + L A L I HD+ +P+ AI S +L + G + + ++L Sbjct: 669 REEAAVLAKNEQLRANLLRSIGHDLRTPLTAISGSAAVLRDGGEKLEDAKRLELADAIYN 728 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------------FIAVDKRVQVSWT 105 ++ + + T D + L +++++ Sbjct: 729 DSLWLIDTVENLLAITRIEDGDMQLNLTSELMDEVIAAALSHVARESHGHRVTITHTDEI 788 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++L NL A P+G VTI + + + + +G + Sbjct: 789 LLVKIDVHLIMQVLTNLITNAFKYTPKGSTVTIGARREGSSVVVEVADDGPGVSDRDKPR 848 Query: 163 KFTQIVDGNVESTIDSH---DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + +DSH + + + + H V L Sbjct: 849 VFDRFFIAEGPRPVDSHRSFGLGLSLCRSIIEAHGGIIEVADNKPHGAVFRFTLP 903 >gi|220929135|ref|YP_002506044.1| histidine kinase [Clostridium cellulolyticum H10] gi|219999463|gb|ACL76064.1| histidine kinase [Clostridium cellulolyticum H10] Length = 464 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 72/230 (31%), Gaps = 18/230 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++ N+ + L L + H++ +P+ + + +E + + + I Sbjct: 232 DLAENMEKQETLRRRLTGDVAHELRTPLATLQSHMEAMIDGIWSADSERLKSCHEEIVRI 291 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 S + + + ++ +F+ ++++ + Sbjct: 292 SKMVGDLERLAKYESENITLNMDTFDITKLAKRQVQNFETEFLCKGLELELTGPSCLVYA 351 Query: 112 SRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 +++ ++ +NL A P+GG V + +QD+ N S++ NG + F + Sbjct: 352 DKDKISQVFVNLLSNALKYTPKGGSVELHIQDNNNFIEISVEDNGLGIPEEDLPYIFERF 411 Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + + + K Sbjct: 412 YRADKSRDRLTGGSGIGLTICKSIVLAHGGDIYAQSNPGKGTKFIFTVPK 461 >gi|28896893|ref|NP_796498.1| nitrogen regulation protein NR(II) [Vibrio parahaemolyticus RIMD 2210633] gi|260877791|ref|ZP_05890146.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AN-5034] gi|260902584|ref|ZP_05910979.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ4037] gi|308095206|ref|ZP_05904055.2| nitrogen regulation protein NtrB [Vibrio parahaemolyticus Peru-466] gi|308125978|ref|ZP_05778415.2| nitrogen regulation protein NtrB [Vibrio parahaemolyticus K5030] gi|28805101|dbj|BAC58382.1| nitrogen regulation protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088503|gb|EFO38198.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus Peru-466] gi|308089873|gb|EFO39568.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AN-5034] gi|308109619|gb|EFO47159.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ4037] gi|308113476|gb|EFO51016.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus K5030] Length = 348 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQNSIIIERDYDPSLPEILMDA 235 Query: 116 AKILLNLFM---------------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + I + K + NG Sbjct: 236 DQIEQAMLNIVSNAAQILAHQEHGNITIRTRTVHQANIHGKRCKLAARIEITDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347 >gi|330977295|gb|EGH77249.1| sensor histidine kinase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 436 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118] gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118] Length = 1364 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVVTLEK 872 >gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 623 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 60/236 (25%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50 + K + + + L + + + H+I +P+ AI LL + ++ + Sbjct: 383 LKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVENEQEREQYI 442 Query: 51 QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 LI ++ + + + L + + + + Sbjct: 443 SLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPAGVKLFA 502 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + G+ +IL N A + +G D+ S+ G Sbjct: 503 RYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDG-IRISVSDTGCGIP 561 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 562 PDKLGMIFERFEKVDSFAQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 617 >gi|301055130|ref|YP_003793341.1| PAS/PAC sensor signal transduction histidinekinase [Bacillus anthracis CI] gi|300377299|gb|ADK06203.1| PAS/PAC sensor signal transduction histidinekinase [Bacillus cereus biovar anthracis str. CI] Length = 510 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + S L L + I H+I +P+ ++ L LL + + + ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I + + Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167 + ++ +N+ A ++P GG + I + N + + G ++ +++ Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFTLIRIIDEGCGI-PEDRISRL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500 >gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 547 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK NL + L + + H+I +P+ AI LL E + E + Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLIESDDKKERQDYVD-IMQENT 358 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106 L + +++ ++ + D Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + +++ N A G + +++ F++ G + Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478 Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 S + + + E Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIKHLGGTIGAESEIGVGSRFWFT 526 >gi|264676669|ref|YP_003276575.1| osmosensitive K+ channel signal transduction [Comamonas testosteroni CNB-2] gi|262207181|gb|ACY31279.1| osmosensitive K+ channel signal transduction [Comamonas testosteroni CNB-2] Length = 897 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + L S + HD+ +P+ I + + + ++ A Sbjct: 658 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTGILGAAQAALPHAPQGPAHHMLVQIRNQAQ 717 Query: 62 IRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + L +Q S + L Sbjct: 718 ALQQLVDNLLAMARLQQGGVQLKREWLPVDELVGSALAQMRERLAAHALQTSLPADLPLL 777 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL A P G +T++ + + + S++ G Q+ Sbjct: 778 QLDAVLMERVLVNLLDNAIKYTPEGTTITVAASVADGDCVLSVQDAGPGLPVHLSAEQLF 837 Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + + + RL + S L Sbjct: 838 EPFTRGQAESAVFGMGLGLALAQRIVQAHGGRLRVAQADPGPGTIFSVHLP 888 >gi|298527948|ref|ZP_07015352.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511600|gb|EFI35502.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 883 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 65/240 (27%), Gaps = 31/240 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L S + A+ L I HD + + +I NS EL LD + ++ + +S Sbjct: 507 ERQLLQSQKMEAMGTLAGGISHDFNNILTSIMNSTELAQGDLDPDSPAYQDLERVLKASH 566 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDL 111 ++ + + L ++ + + + Sbjct: 567 RGRDLVQRILTFSRPSQEGFRPTVLPELVRDSVSLLQSSLPRNIEVRSSVSGGYEPVNVN 626 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISV---------------QDSKNENIFSLKINGN 156 + +++++NL A ++ + + G Sbjct: 627 PTQISQVVMNLCTNAFQAIQDQKGTLTINLEEIELDVYRAEELDMPAGKAFRLEISDTGP 686 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + V+ + +K + + D LL Sbjct: 687 GIDRRDL-DKIFDPFFTTKSQSGGTGLGLAVVLGIVKNHKGVIQVDSSPDQGTSFEILLP 745 >gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] Length = 756 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57 + + + + + I H++ +P+ AI +++ + D + Sbjct: 508 QEEKTRAEAANQAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIY 567 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------------QVS 103 S L + + + + + R+ V+ Sbjct: 568 SSGTYLLNVINDILDMSKIEAGRMSIETEVVNASEAAEDAARIITGAASEKNIVISADVA 627 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 R ++LLNL A P G VT+ + ++ F + G + Sbjct: 628 DNLHVDVDKRALKQVLLNLLANAVKFTPDHGTVTLKARPRGDKVRFEVTDTGIGISERDI 687 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ T + L + +L E V+S L Sbjct: 688 -ERLAKPFVQVENQFTKTHQGSGLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLP 743 >gi|254426852|ref|ZP_05040559.1| PAS fold family [Alcanivorax sp. DG881] gi|196193021|gb|EDX87980.1| PAS fold family [Alcanivorax sp. DG881] Length = 980 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 64/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L ++ L + + H+I +P+ AI + LD +E ++ + Sbjct: 741 LRHMEAHLAHNERLASIGRLAAGVAHEIGNPVTAIACLAQNLDSETDAEEQLESSQQILE 800 Query: 59 SAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + D++ + + D Q Sbjct: 801 QTRRITRIVESLVTFSHSGGIKHSQHVPVNIRDTVDEAISLLLLDPDHRQQPFTNQCEPE 860 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ +NL A + VT+ + + ++ G+ E Sbjct: 861 HWVQGDPQRLLQVFINLLGNAADASADKQPVTVRCESADEVLDVIVEDQGHGI-PDELRD 919 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLE 214 + + V S + V + E+ + E D L Sbjct: 920 ALFEPFVTSKPPGRGTGLGLALVYSIIEEHLGAIRVESPITDQGGTRFIIRLP 972 >gi|167465701|ref|ZP_02330790.1| two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381731|ref|ZP_08055688.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154321|gb|EFX46640.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 503 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 66/225 (29%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53 K S L + + + + H+I +P+ + ++L + E + +L Sbjct: 276 KKTEELFRKSEKLTVIGQIAAGVAHEIRNPLTTLKGFIQLFHAGEEGKQEYYEVMMGELN 335 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 R+ + + + + I + + + + R+ V+ + + Sbjct: 336 RIELIITEMLVLAKPHMSHFQPRHIDKIIQNVLILLDTEAKHKNIRIVVAGEADLAPVLC 395 Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ + ++ K+ + G PE+ ++ + Sbjct: 396 EENQLKQLFIHLLKNAVESMEHGGKILIQIRGHGKDRICVRITDQGCGI-APEQMHKLGE 454 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +++ + E +S L Sbjct: 455 PFYTTKEKGTGLGMMISYKIIEDHQGTMEIESKMGEGTTVSVYLP 499 >gi|39996398|ref|NP_952349.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983278|gb|AAR34672.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 726 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 32/245 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 + + L + + A+ L I HD + + I +L + D+++ Sbjct: 355 RREMLQRLGQAHKMEAVGRLAGGIAHDYNNKLTVILGYAHVLKLTGFQSKEAPEQLDQII 414 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107 + S L F R VD + + + I D + Sbjct: 415 RAAEHSRDITRQLLAFTRSERVNPVRVDLNRLISQSSKSLTRLIGEDITLSHVAGADLWP 474 Query: 108 KIDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLK 152 + ++L+NL M A + L R + + ++ Sbjct: 475 VRIDPTQADQLLMNLVMNARDAIAGTGSVTIATSNVVLDRATVRHLQGASPGEYVLMTVS 534 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G PE I + + + V + +N + E V S Sbjct: 535 DTGCGM-DPEVMEHIFEPFYTTKEMGKGTGLGLATVYGIVRQNGGAISVESEPGGGSVFS 593 Query: 211 ALLEK 215 L + Sbjct: 594 IYLPR 598 >gi|77359607|ref|YP_339182.1| sensory transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] gi|76874518|emb|CAI85739.1| conserved protein of unknown function ; putative sensory transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] Length = 893 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 27/239 (11%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + + + L + + + H+I +P+ AI E L Q + Sbjct: 395 MNSQLELAIGQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKITNNKQHLSTI 454 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------- 100 ++ L+ + + I + + + + + Sbjct: 455 LRNSKHLLELINNILDLSKIEAEKIAVEQAPLNVVRLMHDIESIIEPLAQQKKLKLSINY 514 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 Q+ +IL+N+ A +G E +F ++ +G Sbjct: 515 QLPLPHTINSDETRLKQILINIASNAVKFTEQGHVSITVHYLPSQELMFVIQDSGIGMVE 574 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + ++ + LA + + D + + Sbjct: 575 SQIK-RLFTPFEQADATTTRRFGGTGLGLCISKNLAQRLGGDITVKSELDVGSCFTITI 632 >gi|27375368|ref|NP_766897.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27348504|dbj|BAC45522.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 636 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLEL----LDEVGIE--------DEVMQLIRLSSMSAIIRLK 65 L + I H++ P+ AI S E L + V+ R +S Sbjct: 413 LSASIAHEVNQPLAAIVTSGEAGLRWLRRDVPDLKEVATTIGHVVAQGRRASEIVTRIRT 472 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLN 121 F++ A + + + ++ +A D + + ++L+N Sbjct: 473 FLKKAAPQQDLLQIGEVIEEATALVARELAKDDVALIVEPQHGLPPVRGDRIQLQQVLVN 532 Query: 122 LFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 L + A ++ + + +++ +G P+ ++ D + Sbjct: 533 LLINASQAMSGRPGSRVITLRAGTVDSETLAITVQDSGPGI-PPDDMARLFDPFFTTKDG 591 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + RL L Sbjct: 592 GMGMGLAICRTTVEAHGGRLSVVSTPGSGATFHLTLP 628 >gi|326939699|gb|AEA15595.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 357 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 70/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 240 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + + + V + ++ + E + + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCI 351 >gi|320162274|ref|YP_004175499.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996128|dbj|BAJ64899.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 470 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLI 53 + + LS ++ +L + + H++ +P+ I + L+ ++E +Q I Sbjct: 217 LIQAFNQTLSRLE--SLFTTQRRFIADVSHELRTPLTVIKGEVSLMRKMKCGDEESLQSI 274 Query: 54 RLSSMSAIIRLKFM---RLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVS 103 + + A +D D + + Sbjct: 275 ESEVDRLSRLVGNLLLLAQAESGRLPLDLKPVEMDTILLEVFQQMRTLAGEKVHLEIVTL 334 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 I ++LLN+ A P GG VT+ + + ++ G + Sbjct: 335 EQVSLIGDRDRLKQVLLNIVGNAVQYTPAGGVVTLGLTQTDGYARITVSDTGPGIPEEDL 394 Query: 163 --KFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G + + + ++ + L Sbjct: 395 PYIFERFYRGEKSRTRSQGQASGFGLGLSIAYWIVQVHGGKIDVTSVVGKGTTFIIHLP 453 >gi|288555625|ref|YP_003427560.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4] gi|288546785|gb|ADC50668.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4] Length = 539 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58 A+ + + + H++ +P+ +I +LL + + + + + Sbjct: 301 AQAQAEKAHKAK--SDFLAMMSHELRTPLNSILGFSQLLHQDTGTPLSAQQLAKVDKILK 358 Query: 59 SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQ 101 S L + F VD + + I + + ++ Sbjct: 359 SGRHLLTMINDILKLVKLENGKPFIEFQEVDLDAIVQAALREITPYAQLKKLKMNCEDLK 418 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++LLNL + G +TIS Q S++ +++ G Sbjct: 419 LKSDQIIYSDPVRLQQVLLNLLSNSVKYNREHGNITISYQVSEHTVTVNVEDTGVGISSV 478 Query: 162 EKFTQIVDGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ + I V + E + ++ E L Sbjct: 479 EQSKIFDPFYRTEEFSMEAEGTGIGLSLVKQIVTEMQGKIGVESQLGEGSTFWIELP 535 >gi|254168265|ref|ZP_04875111.1| PAS fold family [Aciduliprofundum boonei T469] gi|197622774|gb|EDY35343.1| PAS fold family [Aciduliprofundum boonei T469] Length = 1568 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMD----------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50 +A N+ L S++ L L+ + HD+ +P+ I ++L+ E + Sbjct: 1339 LANNMAVALRSLEIQKDLEKAKNLQELMLHIVSHDLKNPLAVIEGYIDLMKEGFDPSYLD 1398 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSW 104 + ++ I K + G +D L D + ++ ++ Sbjct: 1399 AMQMAVEEASSIIEKARLFSKLGAGKIDEERKLIDLKEEIENVSSLLSHKYPSGKINIAA 1458 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +I ++ N+ A V IS+ D + +G + Sbjct: 1459 DKIEIYAFPIIKEVFTNIIDNAFKYGA--KNVDISLIDKDENVEIRIADDGPGIPKELRN 1516 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T S + V ++ + ++ E V L K Sbjct: 1517 TIFNAFETLSKKKGSGLGLSIVKMIVEMHDGKVWVEENKPKGSVFVIQLPK 1567 >gi|71736616|ref|YP_272552.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557169|gb|AAZ36380.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. phaseolicola 1448A] Length = 440 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 272 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 331 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 332 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430 >gi|329938084|ref|ZP_08287535.1| two component sensor kinase [Streptomyces griseoaurantiacus M045] gi|329302573|gb|EGG46463.1| two component sensor kinase [Streptomyces griseoaurantiacus M045] Length = 477 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 16/220 (7%) Query: 11 SMDLVALL---CSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAII 62 A L + H++ +P+ AI L+L L + + + Sbjct: 252 RERSAAQLRRFVADASHELRTPLSAIRGYLQLYDRGILTDPDERKRAWERMNGEVDRMGR 311 Query: 63 RLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + E + V S Sbjct: 312 LVDELLTLARLDQRPELRLRNVDVSRLVRDAAEDLRAQQPDRPVTVSASGALLVRADESG 371 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++L NL A P V + + S ++ G + Sbjct: 372 LRQVLGNLVANVRAHTPPDVPVRLDARRSDGTVRLTVADEGPGLPEEDAARMFDRFFRTG 431 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + D + ++ +L Sbjct: 432 SSAGSGLGLAIVQGVIEAHCGDVTATTAPDEGLTVTVVLP 471 >gi|319898866|ref|YP_004158959.1| sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402830|emb|CBI76381.1| sensor histidine kinase [Bartonella clarridgeiae 73] Length = 854 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/243 (8%), Positives = 61/243 (25%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 M ++ M V L I HD + + AI S + L + I+ + Sbjct: 463 MLEDKIIQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSSDPAHADLINIKNN 522 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 + A ++ + + + I + I + + Sbjct: 523 ANRAAALVQQLLAFSRKQTLRPEKVDFTEFLSDIRNLILPLLGNNIQLKIIHGRDLWDVK 582 Query: 115 -----RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154 ++++NL + A ++ + + + ++ Sbjct: 583 VDQTSFQRVIMNLVINARDAMLDGGIVTITTNNITKQQSAEFNYAGFVVGEYVQLTISDT 642 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ + + + V + + + + + Sbjct: 643 GTGISAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGYIYCDSQEGEGTTFHIF 701 Query: 213 LEK 215 L + Sbjct: 702 LPR 704 >gi|312879863|ref|ZP_07739663.1| integral membrane sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310783154|gb|EFQ23552.1| integral membrane sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 424 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 16/217 (7%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAII---- 62 L AL L + + H+I +P+ ++ L+L L + + ++ + + Sbjct: 198 RLAALGELVAGVAHEIRNPLASMRIHLDLLADRLRDRPELEGHLEALGVEMDRLGRTVDQ 257 Query: 63 -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 + V + RV + + + ++ Sbjct: 258 FLAFARPRPPRRERLQPRDLLEWTARMVGSQGSRGNVRVVLEAPPAPLPFWGDEDQLRQL 317 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 LLNL + A ++ GG +T+ +Q++ E F+++ G ++ + V + D Sbjct: 318 LLNLGLNALKAMEEGGTLTLELQETPEELRFAVEDTGKGIPEK-LVDRVFEPFVTTRPDG 376 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +A ++ L +L + Sbjct: 377 TGLGLSIAQRIAQDHGGNLSCRTSPG-GTRFILILPR 412 >gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6] Length = 861 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 61/247 (24%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRL 55 + + L L + + I H++ +P+ AI +L + G + + Sbjct: 612 TEELRAALEKAQLADRRKSDFLTGISHELRTPLNAIIGFSTVLIDELDGPLAPMQREDAQ 671 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKR 99 S L + ++ L ++ ++ + Sbjct: 672 SINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLAPLVSEVLDTMQGLLRSGQVSLNQ 731 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSL 151 + + +IL NL A RG + + + + + Sbjct: 732 NLPADLPAVCADADRIRQILFNLLSNAVKFTERGTITVSANLRDEIGPDGNAQSMVVMHI 791 Query: 152 KINGNLARFPEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + G + + + V L ++ + E + Sbjct: 792 RDTGIGIPANRQHEIFEEFVQVHDKRLRRRGTGLGLAIVRRLVEAHQGHIWVESSPNEGS 851 Query: 208 VLSALLE 214 S L Sbjct: 852 TFSFSLP 858 >gi|298530516|ref|ZP_07017918.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509890|gb|EFI33794.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 546 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 25/216 (11%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED----------EVMQLIRLSSMSAIIRLKFMRLAFG 72 HD+ +P+G+I ELL E ++ L R L ++ G Sbjct: 182 AHDLRNPLGSIKLYAELLQEDMKHQLSETGAGMLDKIQSLSRFMLGMVEDLLDVTKIDSG 241 Query: 73 YTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 L + + + + + + +++ NL Sbjct: 242 QINLQLENVRPGRVVQDALDPLRMLAREKDISLNCHVLEDLPQVNLDVAKFTQMVTNLLT 301 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH----- 179 A P G V + + + + G E+ ++ ++ Sbjct: 302 NAIKYSPSGSTVDVRLYTRDGYLVLDVSDYGQGI-PGEEMDRLFAEYQTTSSRPTQGEGS 360 Query: 180 -DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + + L Sbjct: 361 VGLGLAIARRLVEAHDGTIEVQSSQGAGTTFTITLP 396 >gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1375 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + I + + + + + H+I +P+ +I +LL + DE + + + S Sbjct: 856 LEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKNTDLSDEQGEYVNIFESSG 915 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSW 104 I + + V D+ Q E + + R + Sbjct: 916 EILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQLQATAASSRHVELVMRYKPDV 975 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160 + S +ILLN+ A G + + + + F++ G Sbjct: 976 PEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSPESNSTDNITFTISDTGIGI-A 1034 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PEK I + + LA + L Sbjct: 1035 PEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITASSTPGKGSTFMVTLP 1094 >gi|197118607|ref|YP_002139034.1| PAS/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087967|gb|ACH39238.1| sensor histidine kinase response regulator, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 796 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 58/234 (24%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK 65 M+ + L + HD + + I +L ++E +Q + + + ++ Sbjct: 425 QKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVEENSSLWLYLQEVVKAGERSRDMVR 484 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDLSRERAKI 118 + + L E + + + +I Sbjct: 485 KLLAFSRKEIISPRAVDLNIHCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQVDQI 544 Query: 119 LLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFPEK 163 L+NL + A ++P G ++ G E Sbjct: 545 LMNLAVNARDAMPEGGCLTISTENATVDEAFCDYRLDARPGEYACLTVADTGFGM-DREL 603 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V + +N L + L + Sbjct: 604 TKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLPR 657 >gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492] gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492] Length = 623 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 60/236 (25%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50 + K + + + L + + + H+I +P+ AI LL + ++ + Sbjct: 383 LKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVENEQEREQYI 442 Query: 51 QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 LI ++ + + + L + + + + Sbjct: 443 SLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPAGVKLFA 502 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + G+ +IL N A + +G D+ S+ G Sbjct: 503 RYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDG-IRISVSDTGCGIP 561 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 562 PDKLGMIFERFEKVDSFAQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 617 >gi|86750706|ref|YP_487202.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573734|gb|ABD08291.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 926 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 69/244 (28%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M S L A+ L + HD + + I+ + E+L + + + I Sbjct: 523 MRATEHRLHQSQKLEAIGQLTGGVAHDFNNMLTVINGTAEILLDELADRPDLCSIARMIE 582 Query: 59 S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R ++D + + +Q+++ I V+V + Sbjct: 583 QAAGRGADLTRQLLAFARRQPLQPRNIDVNAIVLNTQQLLKATIGEHIDVEVRLAQDVDA 642 Query: 111 LSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLK 152 + +++ L A ++P GGK + ++ Sbjct: 643 ARVDPSQLSSALLNLAVNARDAMPNGGKLMLETADVVLDAAYGQHNPDVQPGRYVMIAVS 702 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E ++ + + + V ++ + + H L Sbjct: 703 DTGTGI-PAELCDKVFEPFFTTKSAGQGTGLGLSMVYGFVKQSGGHINIYSEEGHGTTLK 761 Query: 211 ALLE 214 L Sbjct: 762 LYLP 765 >gi|77458389|ref|YP_347894.1| multi-sensor Signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] gi|17980436|gb|AAL50631.1|AF418994_1 bacteriophytochrome [Pseudomonas fluorescens] gi|77382392|gb|ABA73905.1| multi-sensor signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 745 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 67/237 (28%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 +A+ + ++ L + + HD+ +P+ I ++ + + Sbjct: 507 LARQVRREQEAVRARDELVAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISTAID 566 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRV 100 + A R+ + T +D+ +++ + + Sbjct: 567 TMQQAAGRMNTLLEDLLDTSKIDAGRYTIAPQKLDVAQMFEEAQSLLAPLALDKDISISF 626 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A PR G V + + ++ +F+++ +G Sbjct: 627 EADPDLSIHADPERLFQVLSNLVGNAIKFTPRLGTVDVYAKSVGDDIVFTVRDSGEGIPK 686 Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E + Y + + +++ E + + Sbjct: 687 DHLPHVFDRYWTVKEGNPTGTGLGLYITQGIVEAHGGQIVAESEPGQGSEFRFTVPR 743 >gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 1391 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 58/247 (23%), Gaps = 34/247 (13%) Query: 3 KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 K LS A+L + + H+I +P+ + ELL + ++ + Sbjct: 820 KMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTD 879 Query: 55 LSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----- 98 + S + + D+ ++ Sbjct: 880 IIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIV 939 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKING 155 RV+ + +I+ NL A G VT + S+ G Sbjct: 940 RVEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTRLTISVTDTG 999 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 + + + + L + E + Sbjct: 1000 IGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESAEGKGSTFW 1059 Query: 209 LSALLEK 215 + L + Sbjct: 1060 FTVTLPR 1066 >gi|154244154|ref|YP_001415112.1| histidine kinase [Xanthobacter autotrophicus Py2] gi|154158239|gb|ABS65455.1| histidine kinase [Xanthobacter autotrophicus Py2] Length = 510 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 68/234 (29%), Gaps = 24/234 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 +++ + A + H++ +P+ ++ +E L + + + ++ + Sbjct: 263 RDLTQQRRVEQMRADFVANASHELRTPLASLSGFIETLQGPARNDAPARERFLAIMAAQA 322 Query: 58 MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110 + + + + G + V + + + V+ K Sbjct: 323 RRMSRLIDDLLSLSRIELNAHVRPQTKVDLGGILAHVCDTLSPLARDRGVTLDQVKDAVP 382 Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E ++ NL A G ++ + + + S++ G PE Sbjct: 383 LEVLGDRDELIRLFENLVENALKYGAPGKRIEVRLFRENGTAVVSIRDFGPGI-PPEHLP 441 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + + V + ++ RL + + S L Sbjct: 442 RLTERFYRVDVAASRDQGGTGLGLAIVKHIVARHRGRLGIDSVLGEGATFSVRL 495 >gi|331084797|ref|ZP_08333885.1| hypothetical protein HMPREF0987_00188 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410891|gb|EGG90313.1| hypothetical protein HMPREF0987_00188 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 358 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 17/213 (7%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S + H+I +P+ I N+ ELL + + + + + + Sbjct: 139 SNVSHEIKTPLAIIQNNAELLCMETEPKKQKEYAEIIFQTTKRLSELISNILKLNKLEKQ 198 Query: 80 LIGLGDIEQ----------VIEDFIAVDKRVQVSWTGEKIDLSRE----RAKILLNLFMV 125 I E + + I K ++ E + NL Sbjct: 199 AIVPMTEEYDLCGQLAECALNYEAIWEKKGIEFDADMEDHVKITADASLMELVWNNLLSN 258 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQ 182 A GG++ ++ + + S++ NG F + G+ + + + Sbjct: 259 AVKFTEPGGRIKLTEWSGEKQICVSVEDNGCGMSEETQKHIFEKFYQGDTSHAMAGNGLG 318 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + N R+ E + L+ K Sbjct: 319 LALAMRVLQLNDYRIEVESSPGSGSKFTVLIPK 351 >gi|313673519|ref|YP_004051630.1| integral membrane sensor signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312940275|gb|ADR19467.1| integral membrane sensor signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 717 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 72/213 (33%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 + +R+ H+I +P+ I + E L++ + +++ ++ K + Sbjct: 497 IATRMAHEIKNPLTPIKLNAERIYKKCRDLEDEKLRSIILEGMQTIINEVSELHKLVTEF 556 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNL 122 + + + ++I I + + + + ++L+NL Sbjct: 557 NDFARLPSLKKEVFYLCELINSVIHMYKDAHPEVIFAISCDGGFKINADKSQIKRVLINL 616 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 A ++ G ++I+V + + + NG+ E +I D + Sbjct: 617 ITNAIHAVKGKGLISINVSEFETYYEIVVADNGHGIPQEELG-KIFLPYYSKKPDGTGLG 675 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + E+ ++ ++ + L K Sbjct: 676 LAIVKKIIDEHNGKIYANSVEGEWTKIIIELPK 708 >gi|289674471|ref|ZP_06495361.1| sensor histidine kinase [Pseudomonas syringae pv. syringae FF5] Length = 384 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 159 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 215 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 216 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 275 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 276 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 335 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 336 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 374 >gi|229061214|ref|ZP_04198564.1| hypothetical protein bcere0026_33050 [Bacillus cereus AH603] gi|228718085|gb|EEL69725.1| hypothetical protein bcere0026_33050 [Bacillus cereus AH603] Length = 510 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 334 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 I + + + + + ++ I + + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 S + ++L+N+ A ++P GG + I +N + G E+ ++ Sbjct: 395 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGI-PEERMARL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 500 >gi|256829812|ref|YP_003158540.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578988|gb|ACU90124.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 552 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 76/239 (31%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG-----IEDEVM 50 A+ + S + AL L + + H++ +P+ I + +LL+E E + Sbjct: 310 AQMNEELIQSSKMAALGKLAAGVAHEVNNPLAVIREKAGWMRDLLEEEDVKASPNFQEFV 369 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQV 102 + + G+ ++ + + + + + Sbjct: 370 DAVDKIEQHVERAGTVVHRMLGFARRMEPVCNDLYINDVLKQTTAFLENEIRFRNIELIW 429 Query: 103 SWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL--KINGNL 157 + + + + +++LNLF A ++ R G +T+ ++ S+ + +G Sbjct: 430 ALNPDLPTIQSDAAQIQQVILNLFNNAIDAIGRNGHITVKTGYEAETDMVSISLRDDGPG 489 Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + + ++ + E LL Sbjct: 490 M-DKEVQRRIFDPFFTTKNVGEGTGLGLSISYSIINKLGGSIRFESEAGKGTEFIILLP 547 >gi|225873257|ref|YP_002754716.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196] gi|225793041|gb|ACO33131.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196] Length = 361 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRL 55 A+ SS L+ L L + I H+I +P+ +I N L LL + + + LI Sbjct: 85 ARAAETLRSSHKLIELGRLSASIAHEINNPLSSITNLLFLLRQEPGLSPLATGYLDLIES 144 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------I 109 I K + + D + + +E+V+ + ++ + E Sbjct: 145 EMDRVISISKQTLSFSRESSTPDHVSLVELVEEVLFLYRHRVEQKHLEVRREYLPVEAVW 204 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKF 164 E ++L NL + A + +GG++ I ++ + ++ G PE Sbjct: 205 GNPGELRQVLSNLIVNAIDASRQGGRLQIRIRKAANGRGDSGIRVTVADTGTGI-PPEVL 263 Query: 165 TQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDH---NVVLSALLE 214 ++ + + + + + + L V S L Sbjct: 264 RRLGEPFFTTKGQQGTGLGLWVTRAIVERHGGELRLRSRWGGRRHGTVFSLFLP 317 >gi|148262211|ref|YP_001228917.1| GAF sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395711|gb|ABQ24344.1| GAF sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 780 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 18/232 (7%), Positives = 55/232 (23%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + + + L + + + I H++ P+ AI L + L Sbjct: 547 LCEAQERLIQGERLATIGEMAAGIAHELKGPLVAIGGFARRLANKLPPPSGERECADLIV 606 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKI 109 + K + ++ L +I ++I D + ++ ++ Sbjct: 607 REVLRLEKMLTDILSFSKKTTICYTLCNISEIINDALAVVQLSLKERNIKIHKNFPRNIA 666 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKINGNLARFPE 162 + ++ + + + G E Sbjct: 667 TFLGDCQQLKQVFINLFLNAEEAMKNGGNLNIKVAPSVLDGSKAISIKIADTGGGIPL-E 725 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ V + +L Sbjct: 726 VLNNIFNPFYTTKDTGTGLGLPIANRIITNHGGKIHINNKPGTGVEFTVILP 777 >gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 512 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRL----------- 64 + + H++ +PI +I E L + E ++ + + + Sbjct: 292 FVANVSHELRTPITSIKGFSETLLDGAFNDEQMLLSFLTIIHDESNRIQVLVNDLLELSK 351 Query: 65 ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L T D L+ + D+ + + V++ + +I N Sbjct: 352 IERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVEIEQDAVILGDVNRLMQIFTN 411 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176 L A A VT+ + + IF +K G E F + Sbjct: 412 LINNAIAYSKEETTVTLRISANDQYGIFEVKDEGIGIEKAEISRIFERFYRVDRARSRNS 471 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + +++ + + L Sbjct: 472 GGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLP 509 >gi|322419518|ref|YP_004198741.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125905|gb|ADW13465.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 798 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 60/234 (25%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLK 65 M+ + L + HD + + + +L +Q I + + ++ Sbjct: 425 QKMESIGQLAGGVAHDFNNMLSVMLGYAQLCQLEAAPSTPLWLYLQEIIKAGERSRDMVR 484 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERAKI 118 + + L + E ++ +V ++ + +I Sbjct: 485 QLLAFSRKEIISPRAVNLNEHCLETEKTLSRLIGEEVRFSFAPDPALWLVRIDPSQVDQI 544 Query: 119 LLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L+NL + A ++P + S+ G E Sbjct: 545 LMNLAVNARDAMPDGGTLTIRTENLDLDEPFCDYRLDAKPGSYVCLSVIDTGTGM-DREL 603 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V + +N + E L + Sbjct: 604 VKRIFEPFFTTKEVGKGTGLGLATVYGIVTQNGGFVDVESEPGQGTAFRIYLPR 657 >gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. ATCC 3502] gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. ATCC 19397] gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. Hall] gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall] Length = 569 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + ++ + I + + Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEKVPLLIGNKDKYNQ 463 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G E +I + Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTRQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 523 RSRVEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565 >gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1358 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 60/238 (25%), Gaps = 28/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + + + H++ +P+ AI LL E + + + + + S Sbjct: 880 AKDAAEAANRAK--TIFLANMSHELRTPLNAILGFSNLLREGDVSEWQRNDLDIINRSGE 937 Query: 62 IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105 L + D + D+ ++ + + Sbjct: 938 HLLSLVDEVLDVAKIEAGRGVLEIAPYDLAGMVRDVMDMMGARAQMKGLALLHADSSGLP 997 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARF 160 ++L+NL A P D + F ++ G Sbjct: 998 RYVRADGPRLRQVLINLVGNAIKFTPSGSVTLRLDAGCVDDDGRFSLTFYVEDTGCGV-A 1056 Query: 161 PEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + +T + L + E + Sbjct: 1057 PEDHERIFEPFVQVGPAATKKGSGLGLAITRQLVEMMGGTVSVESTPGKGSRFRVEVP 1114 >gi|325105694|ref|YP_004275348.1| integral membrane sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] gi|324974542|gb|ADY53526.1| integral membrane sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] Length = 353 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 70/241 (29%), Gaps = 27/241 (11%) Query: 2 AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQL 52 AK + + A+ + + H++ +P+ +I LE+L++ ++ Sbjct: 99 AKEKKIEIDELKREAIFRKEFLTNLSHELKTPLFSIGGYLEVLEDSDLTDVEETQRFLKK 158 Query: 53 IRLSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDK-----R 99 I + I +K + D + + ++ +++E + Sbjct: 159 ISNNVDRLSILIKDLDEISKLESGEIPLNIKKFDITVLIKEVLELMELEAEKHHIELLFK 218 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + + ++L+NL + G ++V + ++ + + NG Sbjct: 219 QKYDVPTFVMADRDKIRQVLVNLIGNSIKYGKENGTTFVTVFEMHDQILVEVTDNGIGIE 278 Query: 160 FPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + + + L+ Sbjct: 279 EKNLKRLFERFFRTDFSRSRNIGGSGLGLAIVKHIVEAHDQAINVRSTPGIGSTFGFTLQ 338 Query: 215 K 215 K Sbjct: 339 K 339 >gi|325109621|ref|YP_004270689.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324969889|gb|ADY60667.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 404 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 73/238 (30%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 A+ L L AL + + + H++ +P+ I N+ L L E+++LI Sbjct: 162 AQLEQRRLKMQKLAALGQMAAGVAHEVNNPLAGIRNAFALFKGNLSPDDENFELLELIDR 221 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKID 110 + M + + L + ++ V + Sbjct: 222 EIERISSLMHQMYQLYRPSHQAPRQFDLQRTIADVVLLTDPLARKSEVQITVEVNDVHAE 281 Query: 111 LSR----------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +ILLNL A + P G+V I + + E + S+ G Sbjct: 282 GAMGPTEVILREGDLKQILLNLVRNAIQASPLKGRVVIELSTTAAEAMISVSDEGTGI-S 340 Query: 161 PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +++ + + + LA ++ + + + + Sbjct: 341 QDAASRLFEPFFSTKTGTREGMGLGLPVSRSLAEAMGGTIVIQNKAPQGACATVTVPR 398 >gi|237713960|ref|ZP_04544441.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409131|ref|ZP_06085675.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647394|ref|ZP_06724984.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807933|ref|ZP_06766713.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446116|gb|EEO51907.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352878|gb|EEZ01974.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637255|gb|EFF55683.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294444871|gb|EFG13558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 62/232 (26%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +A ++S+ L + + + H++ +P+ AI L+ +I ++ Sbjct: 179 LAIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASGEEERKMYADIIAENN 238 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + L I + V++ Sbjct: 239 ERLLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKLNNSPVELICEAHVQP 298 Query: 111 LSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++L NL A G + E F + G E Sbjct: 299 IMMYSERERIIQVLSNLLHNAMKFTASGEIRFGCRLEGMEEVYFFVSDTGIGI-PEEDQK 357 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + L + + S +L + Sbjct: 358 KIFSRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLPR 409 >gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] Length = 1378 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 58/239 (24%), Gaps = 31/239 (12%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56 + +L L S I H+ +P+ I +E L + + + + + + Sbjct: 328 QAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRDRLTDADPGLREELEVV 387 Query: 57 SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101 + + + VD G++ V + + Sbjct: 388 HRNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVDKAGLDFRVHC 447 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 K++LNL A G + ++ G Sbjct: 448 SPLPEPVFVDRSMWEKVVLNLLSNALKFTFDGSIRVAVGVEEGAAV-VTVDDTGIGVAAK 506 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + I V L + + + + L Sbjct: 507 E-MPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGEGTRFTIRLP 564 >gi|84386371|ref|ZP_00989399.1| osmolarity sensor protein EnvZ [Vibrio splendidus 12B01] gi|84378795|gb|EAP95650.1| osmolarity sensor protein EnvZ [Vibrio splendidus 12B01] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 209 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 268 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFMVAHA 128 + + + E V + + + + + NL + A Sbjct: 269 VDRDSFQEVFVDDIAREVSSSEGGYEVQIETDIPESMKPALGNPIAMKRAVSNLVVNALR 328 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 KV+ + +++ NG + F G+ + + Sbjct: 329 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQVGKLFEPFTRGDTARGSEGTGLGLAI 388 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + +++ ++ + + Sbjct: 389 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 417 >gi|332670570|ref|YP_004453578.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] gi|332339608|gb|AEE46191.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] Length = 367 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 20/225 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 + L L + + H++ +P+ I LE +++ ++ + ++R + + + Sbjct: 141 EAQRLRGRLLADLAHEVRTPVATITGYLEAVEDGVQPLDATTLAVLREQADRLTRLAQDL 200 Query: 68 RLAFG-YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRER 115 G V ++E + + ++ Sbjct: 201 AAVTHAEAGDVVLDTAPTRPADIVEAAVLAAQERALARGIALSGAAEPGLPSVRADRHRM 260 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV 172 +++L NL A P GG++T+S + G P F + Sbjct: 261 SQVLDNLLANALRHTPSGGQITVSAARGDGGVRLVVTDTGEGIAAEHLPHVFDRFYRVGT 320 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 I L + + + L Sbjct: 321 ARDRASGGSGIGLAISKALVEAHGGSIRAASAGPGRGATFTVTLP 365 >gi|309789804|ref|ZP_07684383.1| histidine kinase [Oscillochloris trichoides DG6] gi|308228108|gb|EFO81757.1| histidine kinase [Oscillochloris trichoides DG6] Length = 381 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 74/240 (30%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMD------LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQL 52 +++++ ++D L L + + H++ +P+ I +E L + E L Sbjct: 134 LSRSVNQLADALDQTEQRRLA--LLADVTHELRTPLATIGGYMEGLLDGVVQPSHETFNL 191 Query: 53 IRLSSMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I S ++ + + V + + + I V ++ Sbjct: 192 ILHESNRLQRLIEDLELLSRVEAGQLPVVARSVNLVHLIEAICVQFEPIFSANQVRMGIE 251 Query: 102 VSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-- 158 V + +R +IL+NL A+ P GG+V + + ++ + +G Sbjct: 252 VPLRLPPVWADPDRLDQILINLLSNAYRYTPAGGEVVLRAWATTDKMTVEVADSGVGIAA 311 Query: 159 -RFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 P F + + I V L + V + L Sbjct: 312 EHLPHVFERFYRVDKSRARQSGGSGIGLAIVRHLVDAQGGDISVWSAGKGQGTVFTFTLP 371 >gi|302188959|ref|ZP_07265632.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642] gi|330972159|gb|EGH72225.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 436 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 53/217 (24%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL---------- 69 + + H++ SP+ I LL + + + Sbjct: 927 AIVSHELRSPLNPILGWSTLLQTQKLNPAKTAQALNAIARNARLQAELIEDLLDLSRILR 986 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLF 123 T ++ + ++ + ++ + S +++ NL Sbjct: 987 GKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRLQQVMWNLL 1046 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178 A P GG V I ++ + + G + + + Sbjct: 1047 SNAIKFTPEGGLVDIQLERCGAQAQIIVSDTGKGIDPDFLPYIFEYFRQENSATTRKFGG 1106 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V L + + E + + L Sbjct: 1107 LGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLP 1143 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 64/234 (27%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + L+ +D + S + H+ +P+ + +E + + + + L +A Sbjct: 341 ERRRAEQLAELDRAKTVFFSNVSHEFRTPLTLMLGPVEEALQATQDAQQRDRLELIHRNA 400 Query: 61 IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWT 105 + K + ++ D + D+ V E IA Sbjct: 401 LRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLP 460 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 KI+LNL A G I ++ ++ G E Sbjct: 461 EPTYVDREMWEKIVLNLLSNAFKYTFEGEIAVILRSRNEQ-IELEVRDTGIGIPAEELPQ 519 Query: 163 KFTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G T + I V L + + I D + Sbjct: 520 IFERFHRVQGARGRTYEGSGIGLSLVQELVRLHDGTISASSIVDQGTSFIVSIP 573 >gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 479 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 64/237 (27%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA + + S L + + H++ +P+ I+ +++ + + +++ + I+ S+ Sbjct: 240 MASALEKSEQSRK---RLLADVAHELRTPLTVINGTVDAMMDGVLPTDEQQLGTIKEESL 296 Query: 59 SAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTG 106 + +R +D + + + E + Sbjct: 297 LLTRLIADLRDLSLAEAGQLKLDKSVIDLGDLVCRKLEQFRLLAETRNIRLECHNPGGLP 356 Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++L NL A P ++T + D ++ G + Sbjct: 357 SVNGDWVRLEQVLANLLSNALRHTPAGGEVSVRLTEASLDGSPAVAVAVSDTGEGMTPED 416 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E + L Sbjct: 417 LKHIFDRFYRVEDSRSRDEGGAGLGLAIVKQMVTAHSGRVSVESAPGRGTTFTVTLP 473 >gi|225017546|ref|ZP_03706738.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum DSM 5476] gi|224949696|gb|EEG30905.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum DSM 5476] Length = 487 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 61/234 (26%), Gaps = 25/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 MA I +S L S + H++ +P+ AI E + ++ + M++I Sbjct: 235 MADEIS---NSEKLKNEFISSVSHELRTPLTAIQGWSETIMSMGVGDLETTKKGMRVISN 291 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + ++ + + + + + Sbjct: 292 ETGRLSDMVEELLDFSRIQDGRFKLNKDRMDILAELEEAVLIYTEHAHREGKQFIYHDIE 351 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ +N+ A G VT+ + I ++ G + Sbjct: 352 MLPFIFGDRNRIRQVFINIIDNALKYSDAGDTVTVKAEADDANIIITVSDTGCGIAEKDL 411 Query: 164 F---TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + N I + + + L + + ++ L Sbjct: 412 PLVKEKFYKANNTRR--GSGIGLAVAVEIVSMHDGALEIDSEEGVGTTVTITLP 463 >gi|196047633|ref|ZP_03114840.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|229183752|ref|ZP_04310970.1| hypothetical protein bcere0004_13210 [Bacillus cereus BGSC 6E1] gi|196021547|gb|EDX60247.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|228599720|gb|EEK57322.1| hypothetical protein bcere0004_13210 [Bacillus cereus BGSC 6E1] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|196036817|ref|ZP_03104206.1| sensor histidine kinase [Bacillus cereus W] gi|195990546|gb|EDX54525.1| sensor histidine kinase [Bacillus cereus W] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|165872676|ref|ZP_02217306.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167641634|ref|ZP_02399880.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|177651570|ref|ZP_02934359.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190568008|ref|ZP_03020918.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|196039052|ref|ZP_03106359.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|225863420|ref|YP_002748798.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|227815696|ref|YP_002815705.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|228926587|ref|ZP_04089657.1| hypothetical protein bthur0010_13040 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932842|ref|ZP_04095710.1| hypothetical protein bthur0009_13150 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945156|ref|ZP_04107513.1| hypothetical protein bthur0007_13200 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090515|ref|ZP_04221752.1| hypothetical protein bcere0021_13410 [Bacillus cereus Rock3-42] gi|229121099|ref|ZP_04250337.1| hypothetical protein bcere0016_14050 [Bacillus cereus 95/8201] gi|254721236|ref|ZP_05183026.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254733795|ref|ZP_05191509.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254753903|ref|ZP_05205938.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254758999|ref|ZP_05211026.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|301053096|ref|YP_003791307.1| sporulation kinase [Bacillus anthracis CI] gi|164711620|gb|EDR17167.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167510427|gb|EDR85827.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|172082848|gb|EDT67911.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190560742|gb|EDV14717.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|196030197|gb|EDX68797.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|225789681|gb|ACO29898.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|227007235|gb|ACP16978.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|228662354|gb|EEL17956.1| hypothetical protein bcere0016_14050 [Bacillus cereus 95/8201] gi|228692819|gb|EEL46541.1| hypothetical protein bcere0021_13410 [Bacillus cereus Rock3-42] gi|228814517|gb|EEM60781.1| hypothetical protein bthur0007_13200 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826818|gb|EEM72584.1| hypothetical protein bthur0009_13150 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833070|gb|EEM78637.1| hypothetical protein bthur0010_13040 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375265|gb|ADK04169.1| sporulation kinase [Bacillus cereus biovar anthracis str. CI] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|118477014|ref|YP_894165.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118416239|gb|ABK84658.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 426 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 251 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 252 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 311 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 370 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 415 >gi|49477242|ref|YP_035674.1| sporulation kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328798|gb|AAT59444.1| sporulation kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|52143890|ref|YP_082938.1| sensor histidine kinase, C-terminal region; sporulation kinase [Bacillus cereus E33L] gi|51977359|gb|AAU18909.1| sensor histidine kinase, C-terminal region; possible sporulation kinase [Bacillus cereus E33L] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|153835679|ref|ZP_01988346.1| nitrogen regulation protein NtrB [Vibrio harveyi HY01] gi|269959433|ref|ZP_06173816.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII), sensor kinase [Vibrio harveyi 1DA3] gi|148867695|gb|EDL66965.1| nitrogen regulation protein NtrB [Vibrio harveyi HY01] gi|269835870|gb|EEZ89946.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII), sensor kinase [Vibrio harveyi 1DA3] Length = 348 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQVLEKVRQLVELESQHSVVIERDYDPSLPEILMDA 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I Q K + NG Sbjct: 236 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGQRCKLAARVEITDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHSGKIDVESWPGH-TTFTIYLP 347 >gi|119490861|ref|ZP_01623144.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] gi|119453679|gb|EAW34838.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] Length = 1161 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52 + L L I H+ +P+ + LE ++ I + Sbjct: 513 RQQAERLLEVDRLKTEFFQNISHEFRTPLTLMIGPLEAAVNQTQDLPYEQAKIALRNSRR 572 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + +F + L+ K +++ + + + Sbjct: 573 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCRQTVESFQPYCEKKGIKLEISLQLCESI 632 Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 K+L NL A P G + IS++ S + +K G + Sbjct: 633 YLDLERFDKVLYNLLSNAMKFTPENGVIYISLEPSGSYCRLQVKDTGIGIHREQIPHLFE 692 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +G+ + + + V L + ++ + + + L+ Sbjct: 693 RFRQAEGSTNRSYEGSGLGLALVKELVDLHHGQVSVDSVYGEGTTFTVWLQ 743 >gi|91224955|ref|ZP_01260214.1| nitrogen regulation protein [Vibrio alginolyticus 12G01] gi|91190201|gb|EAS76471.1| nitrogen regulation protein [Vibrio alginolyticus 12G01] Length = 336 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+++ E + + + A Sbjct: 105 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPEPSLTEYTHIIIEQA 163 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 164 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIIIERDYDPSLPEILMDT 223 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I + K + NG Sbjct: 224 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 282 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 283 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 335 >gi|28867560|ref|NP_790179.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato str. DC3000] gi|213971030|ref|ZP_03399151.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato T1] gi|28850795|gb|AAO53874.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato str. DC3000] gi|213924266|gb|EEB57840.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato T1] Length = 440 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 272 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNAEGSIRLCLEPIPPFPLRRVSMKRLLT 331 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 332 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430 >gi|325264282|ref|ZP_08131013.1| sensor histidine kinase [Clostridium sp. D5] gi|324030353|gb|EGB91637.1| sensor histidine kinase [Clostridium sp. D5] Length = 243 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 62/209 (29%), Gaps = 14/209 (6%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 S I H+I +P+ + +SL++++ E R + + + + Sbjct: 35 VSAIAHEIRNPLTLVSSSLQVMEIQHPEVRDFPHWRQTIDDVEFMCQLLNELSTFNNGDT 94 Query: 79 SLIGLGDIEQVIEDF-------------IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + IE+++++ + G+ + ++ LNL Sbjct: 95 LHYSVFSIERLLKNIAVSFAISLDSEDSDIEFTSSIPTGLGDYTGDKVKLEEVFLNLLRN 154 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A S+ G++ S ++ + G E I + + Sbjct: 155 AKESITGEGRIHFSASRHEDSLTIQCQDTGCGI-TEEIIDYIFEPFKTYKEGGTGLGLSL 213 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + D + +L Sbjct: 214 SKRIIDSHGGSISVDSKVDEGSTFTIILP 242 >gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 625 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56 + + + + + + H++ +P+ AI +EL+ + +Q++ + Sbjct: 361 REVTGEREAERVKEEFFALVSHELRTPLTAILGYVELVLGEDGATIDEEQHRYLQIVERN 420 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWT 105 + + + + A GSVD + + Q++ Sbjct: 421 AQRLLRLVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVEAARPRAEDAGITLTAQIAPL 480 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A++L NL A P GG+V + + + E + G E Sbjct: 481 VPCVGDRDRLAQVLDNLISNALKFTPSGGQVGVRLSAADGEARIDISDTGVGVPAEE-HA 539 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + V + + + + + L Sbjct: 540 RLFDRFFRASNATTRAVPGVGLGLMIVRAIVAAHGGTIGVDSEVGVGTTFTVRLP 594 >gi|241664111|ref|YP_002982471.1| histidine kinase [Ralstonia pickettii 12D] gi|240866138|gb|ACS63799.1| histidine kinase [Ralstonia pickettii 12D] Length = 535 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 67/237 (28%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56 + + + +L S H+ +P+G I + L + L Sbjct: 296 LQETLDKERRMAELQRNFVSMASHEFRTPLGVIDGQAQRLMRMRDALPPEALEERCGKIR 355 Query: 57 --SMSAIIRLKFMRLAFGYT-------------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + + L + ++ + +D+ V+ Sbjct: 356 AAVQRMTHLMDHLLDSSHWLDSTTPAAMRRTDLPLAALLHEVCEMHRESTPSARIDECVE 415 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R + NL A P G V++ ++ + +++ G Sbjct: 416 TDEPNTFFGDARLLFQAFSNLVGNAVKYSPPGTPVSVRMRSDADGVSVTVEDRGMGIPER 475 Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + V G + + Y V L+ ++ + + + L + Sbjct: 476 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSTFNVFLPR 532 >gi|189424715|ref|YP_001951892.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189420974|gb|ACD95372.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 549 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 24/235 (10%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55 K + L S L AL L +R+ H+I +P+ AI S++LL E E ++ ++ Sbjct: 302 KQMELALKRSDRLAALGELSARMAHEIRNPLAAISGSVQLLAEHGSLRDHESRLLAIVMR 361 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEK 108 S + T L + F V + +S Sbjct: 362 ESDRLNGLITDFLAYARPTPPRFERFNLCHLVRDLQALLMADSRFDKVRLVLDLSEDLTA 421 Query: 109 IDLSRERAKILLNLFMVAHASLPRG---------GKVTISVQDSKNENIFSLKINGNLAR 159 + ++LLNL A ++ G T + + + G Sbjct: 422 WADRGQLQQVLLNLLHNAAEAMQDGGEILVSADLQSGTDDAGRAFSLLCLKILDQGCGM- 480 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V + + + + D+ +++ LL Sbjct: 481 DEDTCRHLFEPFWTTKPAGTGLGLATVYRIVEGHGGMIQADPRDEGGTMMTLLLP 535 >gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] Length = 590 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF------ 66 S + H++ +P+ +I E L E + D +Q+I S + Sbjct: 367 FVSSVSHELRTPLTSIKGYTETLLEGAMHDPEHATAFLQIILKESEQLTALVNDVLDLSR 426 Query: 67 --MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAKILL 120 + VD + +++ I + R E + ++ Sbjct: 427 IESGKIEYHFAPVDLCRVIEKTVEMLTPAIEKKQIRLERHYQDDIPEVTADAGYLEIVVR 486 Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 NL A + +V ISV + + ++ NG + +I + Sbjct: 487 NLLDNAVKYVDDRNGRVRISVFRTGMDVRMEIEDNGIGIAPADL-DRIFERFYRVDKARS 545 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T+ + V + +K + + V S L Sbjct: 546 RTLGGTGLGLAIVKHIVIGHKGHIEVRSRINQGSVFSITLP 586 >gi|262196409|ref|YP_003267618.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262079756|gb|ACY15725.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 440 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 61/210 (29%), Gaps = 9/210 (4%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFM 67 L L + + + H+I +P+ ++ +LL E ED + ++ + Sbjct: 232 LATLGEMSAVLAHEIRNPLASLKGHAQLLAEALPEDGRPKAKADRVVAEAIRLEQLTSDL 291 Query: 68 RLAFGY--TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 L E + ++L NL Sbjct: 292 LQFVRTGEIQPRPVEPALLARTAAAEQPAGRVEVDAAQAPASARLDPDRMHEVLANLLRN 351 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A + P V + V + + IF ++ +G+ E+ +I + + + Sbjct: 352 AIQASPADAAVHLRVAAAGADLIFEVRDHGDGIAAGEE-ERIFEPFHTKRVHGTGLGLAV 410 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + +L + + Sbjct: 411 ARRVVELHGGSITASTHPEGGALLRVRVPR 440 >gi|239907937|ref|YP_002954678.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797803|dbj|BAH76792.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 735 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 59/225 (26%), Gaps = 28/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 A L S + H+I +P+ I ELL E I + + + S + + + ++ Sbjct: 348 AFLAS-MSHEIRTPMNVILGMAELLAETSISSSQRRYLEGIAGSGRMLSQLLSDILDFSQ 406 Query: 76 SVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWTGEKIDLSRERAKIL 119 + L S + ++L Sbjct: 407 IEADRVALFPEVFDPAALAREVCGLAGEAAAGKGLDLQVHTDPSLPDRLVADPLRVRQVL 466 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFTQIVDGNV--- 172 LNL A G + S +FS++ +G PE +I D Sbjct: 467 LNLVWNAVKYTQSGRITVSATPLSDPAGQGFVLFSVRDSGPGI-APEAMARIFDPFSQAD 525 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA ++ E S L Sbjct: 526 AAAHRRQGGAGLGLSISRALARLMGGDVVAESAPGAGSCFSFTLP 570 >gi|229821646|ref|YP_002883172.1| histidine kinase [Beutenbergia cavernae DSM 12333] gi|229567559|gb|ACQ81410.1| histidine kinase [Beutenbergia cavernae DSM 12333] Length = 517 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 14/207 (6%) Query: 22 ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFG 72 + H++ +P+ + LEL+D + + L + + R F Sbjct: 285 VGHELRTPLTVVRGHLELMDPADPEDAAQTRALAMDELDRMYGLVDDLVTLARAERPDFV 344 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 VD + + ++ R+ G + + LL L A Sbjct: 345 RRREVDVAVLVDEVLAKARPLGERRWRLDALPEGTAELDPQRLTQALLQLASNAVRFSDD 404 Query: 133 GGKVTISVQDSKNEN-IFSLKINGNLARFPE---KFTQIVDGNVES-TIDSHDIQFYYVI 187 G V + S + ++ G E F + G+ D + V Sbjct: 405 GSTVGLGGAWSGDGALELWVRDEGIGIAEEEQAHVFQRFARGSTARARGDGSGLGLAIVA 464 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 +AH + + + ++ + Sbjct: 465 SIAHAHGGSVTLDSAPGRGTTVTLRIP 491 >gi|228984636|ref|ZP_04144810.1| hypothetical protein bthur0001_13390 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775092|gb|EEM23484.1| hypothetical protein bthur0001_13390 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 423 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKISIQIASYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|229069534|ref|ZP_04202823.1| hypothetical protein bcere0025_17390 [Bacillus cereus F65185] gi|228713673|gb|EEL65559.1| hypothetical protein bcere0025_17390 [Bacillus cereus F65185] Length = 351 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVEGEEGKGTEFIVRMP 346 >gi|289581708|ref|YP_003480174.1| multi-sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] gi|289531261|gb|ADD05612.1| multi-sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] Length = 477 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 56/216 (25%), Gaps = 9/216 (4%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + L + + HD+ P+ A LEL + + + + Sbjct: 257 EQRLRRQNERL-SEFTGTVSHDLRGPLAAAMGYLELARAEADDVSFLDDVAAAHQRMKTL 315 Query: 64 LKFMRLAFGYTGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + +D + + + VQ++ ++ Sbjct: 316 IDDLLVLARAGNVIDDSSAVPITEAVEYAWNPPPHVKATLDVQIADDVTVQADENRLIQL 375 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI--FSLKINGNLARFPEKFTQIVDGNVESTI 176 NL + T +V + F + +G P+K + + + Sbjct: 376 FENLLGNSLEHGIHNDDGTETVTITVGLLEDGFFVADDGPGI-PPDKREAVFESGYTTNP 434 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 D + V + + + DD Sbjct: 435 DGTGLGLRIVQDIVDAHGWDVTVTESDDGGARFEIT 470 >gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1330 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 60/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ I +LL I + +Q + + + T + Sbjct: 967 AVLSHELRTPLNPILGWSKLLQSPQISAQKLQQGLATIERNAKQQVQLIDDLLDTSRIIR 1026 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLSRERAKILLNLF 123 ++ + + V W G+ +++ NL Sbjct: 1027 GQLSLNLAVINLSEPILAALETVRLSAETKEIKLEVKLGSWLGQIRGDVGRLQQVVWNLL 1086 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDS 178 A P GG++T+ + ++ G + + D + + Sbjct: 1087 SNAIKFTPPGGRITVRLSQVDRWAQIQVRDTGKGIQPQFLPHVFELFRQEDSSTTRSFGG 1146 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + ++ + + LL Sbjct: 1147 LGLGLAIARQVVEAHGGTIMAASQGEGQGATFTVLLP 1183 >gi|149919529|ref|ZP_01908009.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149819654|gb|EDM79081.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 691 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 69/235 (29%), Gaps = 29/235 (12%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSM 58 + + + A+ + I HD + + I EL+ + D +++ + Sbjct: 317 VHAQKMEAINRIAGGIAHDFNNILAVIIGYGELMADALDGQPQLREDLDAMLEAAERAKT 376 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + L + ++ + D ++ + E + +R ++ Sbjct: 377 LVGQLLSFSRRQIQQRARLRLRAVLDGMRTMLARVLREDIELRFDYAPELGSVQADRGQL 436 Query: 119 LLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARF 160 + A ++P + +F++ G Sbjct: 437 EQVVMNLLVNARDAMPEGGRIEVRARNVTLEDDLNEAWEPIPAGEYVMFTVSDTGVGM-D 495 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + + + V+ L +++ L + +S L + Sbjct: 496 KETRRRLFEPFFTTKEQGTGLGMSTVLGLVRQHEGTLEVDSAAGEGTRVSVYLPR 550 >gi|330890973|gb|EGH23634.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. mori str. 301020] Length = 436 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDSSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2] gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 476 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 66/213 (30%), Gaps = 19/213 (8%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67 S I H++ +P+ +I E L+ + MQ+I + I ++ + Sbjct: 247 SSISHELRTPLTSIKGWSETLNSGGYDPEETKIGMQIISKETDRLIGLVEEILDFSKLEQ 306 Query: 68 RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLF 123 G+VD L + + V ++Q+ + + ++ LN+ Sbjct: 307 NAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHGDGNRLKQVFLNIV 366 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDI 181 A + +S+Q K S++ G E ++ D + + Sbjct: 367 DNAIKFSHESSIIYLSLQRVKGNIEISVQDTGIGI-SEENLARVRDRFFQVDHQNGGTGL 425 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++L ++ L Sbjct: 426 GLAISQQFVERHHGQMLIRSELGAGTTITVSLP 458 >gi|300868169|ref|ZP_07112801.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300333793|emb|CBN57981.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 701 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 20/248 (8%), Positives = 53/248 (21%), Gaps = 35/248 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 K + +L + + H++ +P+ AI ++L E +Q I Sbjct: 450 QKARTEAEEASKAKSLFLANMSHELRTPLNAIIGYSDMLAEEFLEIELDNFIPDLQKINS 509 Query: 56 SSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVS 103 + ++ + + D+ ++ + Sbjct: 510 AGKHLLLLVNNILNVSNIESGQIQLDLELFNIETIVKDVVNTLQPLAEKRANILTVNCPE 569 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL------------PRGGKVTISVQDSKNENIFSL 151 G + + L ++ A + + + IF + Sbjct: 570 DIGTMYGDVIKTHQCLFSVLSNASKFTEGGYVNLEVYRHRNNHQEESEIMSGEEWIIFKV 629 Query: 152 KINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G + D + + E Sbjct: 630 SDTGIGMSPEQIGKVFQAFTQADESATRRYDGSGLGLAITKKFCQMMGGDIQVESRLGKG 689 Query: 207 VVLSALLE 214 + + L Sbjct: 690 SIFTIKLP 697 >gi|183984909|ref|YP_001853200.1| two-component system response phosphate sensor kinase, PhoR [Mycobacterium marinum M] gi|183178235|gb|ACC43345.1| two-component system response phosphate sensor kinase, PhoR [Mycobacterium marinum M] Length = 481 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ I EL + D ++ I + + + + Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLTLARLDVQRPLE 317 Query: 81 IGLGDIEQVIEDFIAVDKRVQV-----------SWTGEKIDLSRERAKILLNLFMVAHAS 129 D+ + D + + + T E + ++L NL A Sbjct: 318 RNRVDLLVLAADAVHDARAIDRKRAITVEVLEGPGTPEVLGDEPRLRQVLSNLVGNALQH 377 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V + + + G + F + + + Sbjct: 378 TPDSADVTVRVGTAGQNAVLEVADKGPGMPAEDAARVFERFYRTDSSRARASGGTGLGLS 437 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 438 IVHSLVKAHGGDVTLTTAPGEGCCFRVTLPR 468 >gi|146283959|ref|YP_001174112.1| two-component sensor PilS [Pseudomonas stutzeri A1501] gi|145572164|gb|ABP81270.1| two-component sensor PilS [Pseudomonas stutzeri A1501] Length = 530 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 67/228 (29%), Gaps = 19/228 (8%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMS 59 I + L +L L + I H+I +P+GAI ++ +LL E ++ +L ++ Sbjct: 296 SQIAQKAQQLKLASLGRLTASIAHEIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDH 355 Query: 60 AIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + R +D L ++ + V + G + Sbjct: 356 SRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQQTVHLETIGSSLQTR 415 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164 + ++ L + ++ + + + +G + Sbjct: 416 MDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLH 475 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + Y L N+ RL + + Sbjct: 476 N-VFEPFFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIV 522 >gi|156744256|ref|YP_001434385.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156235584|gb|ABU60367.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 556 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------- 48 + I + + S I H++ +P+ I E L + Sbjct: 283 EQKIEAEMQNT-----FISVISHELRTPVSIIKGYAETLARQDAAWDAATLREGLAVIIE 337 Query: 49 ---VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + A SV L+ + ++ + Sbjct: 338 EADRLAQQINTLLEASRLQTDSMRLELSDWSVRPLVERVVERFAPQAGDRFTFQIDIPDD 397 Query: 106 GEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + ER + ++ NL A P GG + I+ + S + I S+ G E Sbjct: 398 FPPVHADYERTRTVVENLISNAIKYSPNGGLIRITARVSGDFAIISVSDQGIGIPLEEQK 457 Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + ++ R+ + S + Sbjct: 458 KLFRRFYRVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRFSFTVP 512 >gi|134299599|ref|YP_001113095.1| nitrogen-specific signal transduction histidine kinase NtrB [Desulfotomaculum reducens MI-1] gi|134052299|gb|ABO50270.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum reducens MI-1] Length = 424 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 68/218 (31%), Gaps = 15/218 (6%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------- 62 + L+ L + H+I +P+ + ++L+ + + + + M I Sbjct: 204 KLALIGELAAGTAHEIRNPLTTVKGLIQLIAQRFPQGDRARQHFDVIMKEIEQINSIIKE 263 Query: 63 -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 L R + + + + + + ++ + + + + ++ Sbjct: 264 LLLLARRTTPNLSFASLPAVLDQVLLLIEGEANCRGIQIIRDYNDQLPLVIIDEDQIKQV 323 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++L A ++P GG++ IS + N S G E +I +T Sbjct: 324 FIHLATNAIHAMPSGGELHISARTHDISNALEISFADTGIGI-KKEHLARIFQPFFTTTP 382 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + L S L Sbjct: 383 ENTGLGLPVSYQIIDNHGGNLSVRSQLGKGSTFSVTLP 420 >gi|307823178|ref|ZP_07653408.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307735953|gb|EFO06800.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 1161 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 23/223 (10%) Query: 14 LVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIRLSSMSAI 61 L+ + S I H++ P+ AI + + L I + Q + Sbjct: 921 LMGEMASGIAHEVNQPLAAISSYTQVSLNLINVGHPDLAKLAEILYKTQQQALRAGRIIH 980 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILL 120 +F++ + D + D + D + R+ +S ++ +I Sbjct: 981 RMREFVKSHAKQRSTADLNTLIHDAVGLCIDELKQNNIRLTFELENNLPSISVDQIQIEQ 1040 Query: 121 NLFM---VAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 L + +L + S N +K NG ++ QI+ Sbjct: 1041 VLINLIRNSVEALQNLSSERQRHLTIHSHLVPNNVIRVRVKDNGPGL-DEDQKQQILTPF 1099 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + L ++ L L Sbjct: 1100 YTTKSDGMGMGLSISRSLIEAHEGTLHFNSKPGKGTTFYFTLP 1142 >gi|156972907|ref|YP_001443814.1| nitrogen regulation protein NR(II) [Vibrio harveyi ATCC BAA-1116] gi|156524501|gb|ABU69587.1| hypothetical protein VIBHAR_00585 [Vibrio harveyi ATCC BAA-1116] Length = 336 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 105 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 163 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 164 DRLRALVDRLLGPQKPGKKTQENLHQVLEKVRQLVELESQHSVVIERDYDPSLPEILMDA 223 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I Q K + NG Sbjct: 224 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGQRCKLAARVEITDNGPGI-P 282 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 283 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHSGKIDVESWPGH-TTFTIYLP 335 >gi|149917313|ref|ZP_01905812.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1] gi|149821920|gb|EDM81314.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1] Length = 422 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 9/222 (4%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 A ++ ++ + L + + HD + + AI ++++LL+ + + + Sbjct: 196 AAQRERDVEKLEALGRLSAGVAHDFNNLLMAISSTIDLLEIEGRGATAEDFGNLRETVDR 255 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + L R ++ +G +E ++ ++V + + Sbjct: 256 ATRLSAELLCVGRDTARPLSELELDAFVGSVEALLFSLAGEGVELRVELEAPGRRILADP 315 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++L NL + A ++ G++ +S ++ S+ +G Sbjct: 316 GELERVLTNLVVNARDAMAGRGRMVVSTSLAEPYVCLSVVDSGPGMSEEVIAQAFEPFFT 375 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + LL Sbjct: 376 TKGERGTGLGLATCQSIVRRYGGSIELDARLGEGTQVRLLLP 417 >gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 611 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 66/220 (30%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +P+ + + LE L + + + + + + I + + Sbjct: 381 FVANVSHELRTPLTTMRSYLEALADGAWQDDEIAPRFLDVTQTETERMIRLVNDLLQLSK 440 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERAKILLN 121 + + ++ ++V + ++ + ++L N Sbjct: 441 MDSRDYNFYKNSVDFVEFFNKIIERFEMSKSQKVDFVRSMPNQEVFVSIDTDKITQVLDN 500 Query: 122 LFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE---KFTQIVDGN--VES 174 + A P GG +T +V + N+ + S+ G + F + + Sbjct: 501 IISNAMKYSPEGGTITFTVDIEEAANQILVSISDQGVGIPKSDLNKIFERFYRVDKARTR 560 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ + L Sbjct: 561 MLGGTGLGLAIAKEMIQAHDGDIWASSVEGKGTTIYFTLP 600 >gi|326317129|ref|YP_004234801.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373965|gb|ADX46234.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 299 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55 + + ++ + + + H+ +PI +I + LL + + R Sbjct: 51 TQAEQLR-KATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQA 109 Query: 56 -SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + LA G VD ++ + + + K V + + Sbjct: 110 TAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPELNLVFEEPR 169 Query: 115 R-----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++IL N A PRG + FS+ G PE Sbjct: 170 NLPALFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGERVRFSVADTGIGI-APEF 228 Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + LA + + + V S L Sbjct: 229 HARVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLP 285 >gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] Length = 1357 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K +S M L + I H++ +P+ I ++ + + + + + + + Sbjct: 826 KERQKEVSEMKLRFFI--NISHELRTPLTLILAPVQEMLDKVSDRWLHRQLEHVQKNTNR 883 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------------- 107 L + Y + + L +I + + + Sbjct: 884 LLHLVNQLMDYRRAELGVFNLKVRLNLIHNVVEKNFLFYERLAQRKRIAYNLSSNAEGRE 943 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ +E + +K G+ +K +I Sbjct: 944 IFCDPDYMELIVNNLLSNAFKYTGEGKNITVTLKEENHELLLQVKDTGSGIPV-DKQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + I V L + R+ E + S L Sbjct: 1003 FERFYQADNEHLGSGIGLSLVQRLVELHHGRIELESEEGVGSTFSIYLP 1051 >gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 402 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 67/237 (28%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIR 54 +N + L + + + H++ +P+ AI +LL + V ++ Sbjct: 162 RQNRKLA-EASRLKSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPLVPQQLDMVQRIFN 220 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103 + + + + + G ++ Q +E + + V Sbjct: 221 NAQHLLTMLNEVLDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEKQLTLEVNINL 280 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 I+ ++L+NL A GG + + ++ I ++K G Sbjct: 281 EEPMIINDQNSIRQVLVNLISNAIKFTDSGGVWINVQEQANDQLIIAVKDTGVGIASDHL 340 Query: 164 FT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + V L ++ E + + Sbjct: 341 QEIFEAFRQINQTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQLGCGSIFQVEFPR 397 >gi|332664632|ref|YP_004447420.1| PAS/PAC sensor signal transduction histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332333446|gb|AEE50547.1| PAS/PAC sensor signal transduction histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 425 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + K L + S H+ +P+ I +S +LL+ +D+ ++ Sbjct: 188 LRKAFEKERELNTLKSRFVSMASHEFRTPLSTILSSADLLEMYTAEEQQDKRLKHTTRIK 247 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------------KRVQVS 103 + + + + + I L +E +E+F + + Sbjct: 248 SAVNNLISVLNDFLSLSRLEEGKINLTPVEFNLEEFCDEVLDDVQALLKPGQVLQHHGLL 307 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +NLF A G + V+ +NE F ++ G E+ Sbjct: 308 SDTMVFLDKKMLKNVFINLFSNAIKYSEPGKMIDCYVEIMENELCFRIQDYGIGIPEEEQ 367 Query: 164 FT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + V R+ E V + Sbjct: 368 QHLFTRFFRAHNAENIPGTGLGLNIVKRYVELMNGRIHFESTLGEGTVFHVHIP 421 >gi|323700852|ref|ZP_08112764.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323460784|gb|EGB16649.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 581 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 74/239 (30%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL- 55 + L M+ + ++ L + + H+I +P+ I+ L+ ++ I + Sbjct: 331 QTRARTLHRMEHTNRMASIGRLAAGVAHEINNPLAIINEKAGLVRDLFIYKQEYAHDERL 390 Query: 56 -------------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQ 101 L F R ++ ++ + ++ ++ Sbjct: 391 LRNIDSILNSVARCGKITKRLLSFARHIDVEMDEIEFKDLANEVIDFLRKEAEYRSIAIE 450 Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNL 157 + +R +I LNL A ++ GG ++IS +++ +F++ +G Sbjct: 451 MDIPENLPPFISDRGKLQQIFLNLVNNAFQAMNDGGHLSISARETACDHLVFAVTDDGCG 510 Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + L E + E + + Sbjct: 511 IPEADIK-RIFDPFFSTKKKTGGTGLGLSITYGLVQELGGTMAVESEVGKGTTFTITMP 568 >gi|315646973|ref|ZP_07900087.1| histidine kinase [Paenibacillus vortex V453] gi|315277625|gb|EFU40950.1| histidine kinase [Paenibacillus vortex V453] Length = 457 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 60/233 (25%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 +++ +L ++ + + + H++ SP+ +I + L + + +I + Sbjct: 218 EDMMRDLQQLEQMRREFVTNVSHEVQSPLTSISGYAQALKQVNLADHERSRYLDIIIAET 277 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108 + + I + + A + ++ K Sbjct: 278 KRISKMSDSLLKLSVLESQSQQPRLVTLSLDEQIRRVIVALQPQWSARNIHFELELQNVK 337 Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQ 166 + ++ ++ N+ GG V I + G ++ Sbjct: 338 VTADHDQLNQVWTNILSNGIKFSKDGGGVIHVSIKLDVKIVIVRISDTGIGIPLEDQKRI 397 Query: 167 IVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ ++ E L Sbjct: 398 FERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIVVESEVGQGTTFIVSLP 450 >gi|284097754|ref|ZP_06385752.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Poribacteria sp. WGA-A3] gi|283830729|gb|EFC34841.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Poribacteria sp. WGA-A3] Length = 539 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57 M + + L L + + I H+I +P+ I ++ LL ++ ED Q + Sbjct: 300 MKEKLSRT---ERLATLGQVAAGIAHEIRNPLVGIGSTTSLLMEDFPPEDVKRQDLHTIL 356 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKI 109 + + Y D + G D+ + + V++ Sbjct: 357 KETRRLDRIVTQIVEYARPRDIVPGSFDMAALVEETLDLVRHSAGQKRLNLTVAFPPVLP 416 Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE 162 + +++LN + +L G + I +D + +++ NG + Sbjct: 417 ALEADRDQIKQVVLNAIQNSVEALAEHGDIRIEALEELRDGHRGLLTTIRDNGKGISPAD 476 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V++ L Sbjct: 477 LPRIFDPFFTMGKRRGTGLGLAICRNIIEAHGGNIKADSQVGVGTVIAIWLP 528 >gi|228907071|ref|ZP_04070935.1| hypothetical protein bthur0013_12440 [Bacillus thuringiensis IBL 200] gi|228852575|gb|EEM97365.1| hypothetical protein bthur0013_12440 [Bacillus thuringiensis IBL 200] Length = 402 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ + L+LL + +L Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTAQERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + ++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGIGM-ESEQVKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQTMNGKIDIISEKGIGTTFLLTFP 397 >gi|219849579|ref|YP_002464012.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543838|gb|ACL25576.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 469 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 61/217 (28%), Gaps = 19/217 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMR------ 68 L + I H++ +P+ I LE + + +DE ++ + + + Sbjct: 229 QLTADIAHELRTPLSIIKGRLEGIQDGVYEADDEQIEALLAEVALLERLINDLHLLALAD 288 Query: 69 ------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + + + Q + S + + A++L NL Sbjct: 289 AGQLPLYRETVSPVMLVNEAIRSFTQSATERKVALTTTIPSDLPDVDVDPQRIAQVLGNL 348 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-----D 177 A P GG++ ++V + F ++ G+ + Sbjct: 349 ISNALRHTPPGGEINLAVTADADNVTFHVRDTGSGIDSADLPHIFDRFYRSDRSRTRSSG 408 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + ++ H +S + Sbjct: 409 GAGLGLAIARRLVEAHGGQIWATSQLGHGTTVSFRVP 445 >gi|17232702|ref|NP_489250.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134349|dbj|BAB76909.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1558 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 54/217 (24%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + + H++ +P+ I +LL ++E ++ + + Sbjct: 1191 AVLSHELRTPLNPIMGWAKLLRTRTYKEETIKQGLETIERNAKLQTQLIDDLLDVSRILR 1250 Query: 71 ---FGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLF 123 VD + + + + + + +++ NL Sbjct: 1251 GKLNLNVCLVDLRNTVQAGLETVRLAAEAKSIEIHTILSDEPVQVMGDGDRLQQVIWNLV 1310 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178 A P G+V + ++ + + G Sbjct: 1311 SNAVKFTPSEGRVDVRLEQVGRDAQIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGG 1370 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + ++ E +D + L Sbjct: 1371 LGLGLAIVHHLVELHGGTVVAESAGEDQGATFTVKLP 1407 >gi|158317453|ref|YP_001509961.1| integral membrane sensor signal transduction histidine kinase [Frankia sp. EAN1pec] gi|158112858|gb|ABW15055.1| integral membrane sensor signal transduction histidine kinase [Frankia sp. EAN1pec] Length = 494 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 58/204 (28%), Gaps = 12/204 (5%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS------ 76 H++ +PI I LELL D+ E + L+ + + Sbjct: 270 HELRTPITIISGHLELLSDDPAERTETVALVTDELDRMSRMVDDLLTLAKARQPDFLRVA 329 Query: 77 -VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 VD + D+ + R+ + +G + + L+ L A G + Sbjct: 330 DVDLVAFTDDLMARVGALAPRRWRLAEAGSGTAMMDRHRITQALVQLAQNAVQHTGVGDE 389 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSHDIQFYYVILLAH 191 V + + F + +G + F + G + + V +A Sbjct: 390 VRLGCRPRAGVVRFWVADSGPGVAPEDRDRIFERFARGRPGRGTSEGAGLGLAIVRAIAV 449 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + + + + Sbjct: 450 AHGGDVQVLGGPGEGATFELAVPR 473 >gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1090 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S+ + + + H+I +P+ A+ LL I+ I S Sbjct: 700 LRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNTNIDSVQRDYIETIHSSG 759 Query: 61 I-------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSW 104 L F ++ G I L + + + +A D V+ Sbjct: 760 DSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDASRKGLSVSYEVEPQV 819 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARFP 161 + +IL+NL A +G + +E F + +G Sbjct: 820 PRYLMGDMTRLRQILVNLLGNAVKFTDKGFVRLDVSALPVEDGHEIQFRVTDSGIGI-SQ 878 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ +++ + LA + E + ++ Sbjct: 879 DRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGIWAESVPGEGSSFYFTIQ 937 >gi|262200821|ref|YP_003272029.1| ATP-binding region ATPase domain-containing protein [Gordonia bronchialis DSM 43247] gi|262084168|gb|ACY20136.1| ATP-binding region ATPase domain protein [Gordonia bronchialis DSM 43247] Length = 488 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 A S + + H++ +P+ +I EL + D + ++ + Sbjct: 252 ASEQQARASEEKMRRFIA-DASHELRTPLTSIKGFAELYRQGGVPDATDAMRRIDDEAGR 310 Query: 59 SA---IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEK 108 L RL L L ++ + ++ Sbjct: 311 MTLLVEDLLVLARLDAQRPVDKQPLDALALAADAVQSARVAAPQREITLKVGESELPPMV 370 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 + +++ NL A P +T+ V +E + S+ G E F Sbjct: 371 TGDAARLTQVIRNLVNNAVVHTPPEASITVGVGVEGDEVVLSVADTGQGLTAEETAHVFE 430 Query: 166 QIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + G+ + + V L + R+ + L + Sbjct: 431 RFYRGDSSRSRGDSSAGGSGLGLSIVAALVAAHGGRVGVDSTPGAGATFWVRLPR 485 >gi|262193592|ref|YP_003264801.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262076939|gb|ACY12908.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 538 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 59/227 (25%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSM 58 M + + + L + I H+ SP+ +I + ELL + +D + Sbjct: 314 MTQRLDERVRYTRS---LAADISHEFKSPLTSIRGAAELLQDGAADDLPARERFLGNIIE 370 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDI-----EQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + + + +S+ + L Sbjct: 371 DSERLDRTVSRLLELSRIESEATQIEIFDYEALVREQVERYREQAELTLSYRSQHTQLPG 430 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVD 169 R + L + + T + ++ G ++ D Sbjct: 431 RRNHLASVLGNLLENAALHAEAGTAIDVHVSDLGGGRILTEIRNRGP-IISEAVMLRLWD 489 Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + R+ + + L Sbjct: 490 RFFTTRAKQGGTGLGLAIVASIVNAHGGRVSVRSSAEEGTTFAFELP 536 >gi|261211275|ref|ZP_05925564.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC341] gi|260839776|gb|EEX66387.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC341] Length = 438 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNEIASDVASSEGGYEVPIETDLQADLTPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|229166273|ref|ZP_04294032.1| hypothetical protein bcere0007_12470 [Bacillus cereus AH621] gi|228617218|gb|EEK74284.1| hypothetical protein bcere0007_12470 [Bacillus cereus AH621] Length = 354 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ A L+LL + +L Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDACSAKERKLYIDIAINGIE 186 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + L L I + ++ S + Sbjct: 187 QANHVLTDYLTFAKPSIEKEQKLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+F ++P GG + +++ +K G E+ ++ Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 305 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 349 >gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2] gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2] Length = 484 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 ++I + + + + + H+I +P+ + E L + +E++Q+I S Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGSPEESEELVQVIHDES 291 Query: 58 MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + +K + A + IE+V F K + + D Sbjct: 292 LRMGRLVKDLLDLARMEAGHTDMYRQEVDVNELIERVHRKFTVRSKERGLILDYYEPDQH 351 Query: 113 --------RERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARF 160 ++L NL A P G KV + +K G Sbjct: 352 LLLPEADEDRLEQVLTNLLDNAFRHTPSGKKVTIAADQIRGERNELIRIRIKDEGVGIAS 411 Query: 161 PE---KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + V + + + + + LL Sbjct: 412 EDLPYIFDRFYKADKARVRGEDKGTGLGLAIVRNIVEAHGGSVSAASVLGEGTEFTILLP 471 >gi|332653990|ref|ZP_08419734.1| sensor histidine kinase [Ruminococcaceae bacterium D16] gi|332517076|gb|EGJ46681.1| sensor histidine kinase [Ruminococcaceae bacterium D16] Length = 484 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51 +A++I L ++ A S H++ +PI I LLD + E + Sbjct: 238 LAQSINAMLERINRAYSAQARFVSDASHELRTPIAVIQGYAALLDRWGKDDPDALQESIS 297 Query: 52 LIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 IR + S ++ + D G++ + E + Sbjct: 298 AIRSEAKSMEELVEQLLFLARGDNDTQPVKPSLFDLSALAGEVLREEEMICPDRVFLPRW 357 Query: 104 WTGEKIDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF- 160 + + +++ L A P G ++ + + + +++ G+ Sbjct: 358 GEEPVPVRADQGLIKQVMRILMDNAIKYSPPGSRIYLRLSTQERYARLTVQDEGDGISPE 417 Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + + ++ +S LL Sbjct: 418 SIPHIFERFYRTDQSRDRKTGGTGLGLSIARWIVERHEGWFEVVSRPGVGTRISFLLP 475 >gi|283836621|ref|ZP_06356362.1| putative hybrid two-component system regulatory protein [Citrobacter youngae ATCC 29220] gi|291067351|gb|EFE05460.1| putative hybrid two-component system regulatory protein [Citrobacter youngae ATCC 29220] Length = 757 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 68/236 (28%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L + V L + HD + + I SL+L++ + + ++ Sbjct: 382 RQELEEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLDLVEPDSPDAPRINRALKAAE 441 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + +V+ L ++ +++ + +++ + Sbjct: 442 RGALLTQRLLAFSRKQSLHPHAVELKTLLENLGELMRHSLPATLTLEIEAQSPAWPAWID 501 Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKN----------ENIFSLKINGNLARFP 161 +++ + A ++ + ++ + + G Sbjct: 502 VSQLENAIINLVMNARDAMEGQAGMIKIRTWNQRVTRSDGRKQDMVMLEVVDRGYGM-SQ 560 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E Q+ + + + V ++ R+ E + L + Sbjct: 561 EVKAQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|259047259|ref|ZP_05737660.1| sensor histidine kinase [Granulicatella adiacens ATCC 49175] gi|259036035|gb|EEW37290.1| sensor histidine kinase [Granulicatella adiacens ATCC 49175] Length = 350 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 73/231 (31%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLS 56 MA+++ S + + + + H++ +PI ++ +LL + +++ + ++R Sbjct: 122 MAEDLR---RSDEHRSAFIANLSHELKTPIASLVGVSDLLADEKLDESTRKDLTGILRSE 178 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 S+ + ++ K + +++T + + Sbjct: 179 SLRLSRLCDGIVTLTKMERDFKPKKKPLQLDEQIRHAVILITEKWKQKEIDLTFTSQPVH 238 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + ++ NL A +TI +Q+ + ++ NG + F Sbjct: 239 CVTDPDLSMQVWTNLLDNAVKYSSDNVHLTIDIQEENDTARVTIADNGIGMSEEDQRHIF 298 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q + + + V + + + E +L K Sbjct: 299 EQFYQVEHSHVQEGNGLGLTIVKTIVDQLGGSISVESEIGKGSTFQVILPK 349 >gi|148655756|ref|YP_001275961.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148567866|gb|ABQ90011.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 899 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/218 (9%), Positives = 61/218 (27%), Gaps = 24/218 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL---- 69 + I H++ SP+ I+ +LL G + ++++ +R ++ + + Sbjct: 664 ATISHELRSPLTVIYGYTDLLLRGMVGELSGEQRDLLEAVRNRVELMNNIVRNVIMVASI 723 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL---N 121 + + + + + F + V+ + + +R ++L+ Sbjct: 724 EANTLQTDFAAQDVRRMIDEAVAPMRKSFEKKGLALTVTTPDDLPPVRADREQLLIILGQ 783 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 + A +G + Q + G + ++ S Sbjct: 784 VIDNARRYTQQGEVTITAHQRDNGMVQIDVSDTGPGI-PADAMNRLFTRFFRVEGNNSPE 842 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + ++ S L Sbjct: 843 RGSGLGLVITRQLVERHGGKVWAHSEVGRGSTFSIALP 880 >gi|86157538|ref|YP_464323.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774049|gb|ABC80886.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 463 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 57/211 (27%), Gaps = 15/211 (7%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----------FMR 68 + + HD+ +P+ AI+ S LL G + + SA + Sbjct: 252 AIVSHDLKNPLEAIYLSAALLLRTGAAPRLRRHAETIQRSAARMDRLIRELLDLSSIEAG 311 Query: 69 LAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFM 124 + + + + G + + +R ++L NL Sbjct: 312 RLVVEPRPEPLDAVVEEALAGLSPLAQERGVALAADTAGAREPVPCDRERILQVLSNLVG 371 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A RGG VT+ + E ++ +G + + + Sbjct: 372 NALQFAARGGHVTVRAALAPAEARVEVRDDGPGIAPAQLRRVFDRYWKSGSRRGSGLGLS 431 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + R+ E L + Sbjct: 432 IAKGIVEAHGGRIEVESQLGAGSTFRFTLPR 462 >gi|298292228|ref|YP_003694167.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928739|gb|ADH89548.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 839 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S + A+ L + HD + + AI +LL + + I+ ++ A Sbjct: 454 QSQKMQAVGQLAGGVAHDFNNVLTAIIGYSDLLLANSRPTDPSFQDVMQIKQNANRAAGL 513 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERA 116 ++ + ++ LGD+ + + + + Sbjct: 514 VRQLLAFSRRQTLRPQVLNLGDVMSDLSMLLRRLLGETIKLEVKEERDLWPVKADLNQFE 573 Query: 117 KILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++++NL + A ++P + + + + + + + G P Sbjct: 574 QVIVNLAVNARDAMPEGGTLAIRTANVSAAQAAQYAEAGLPAADHVLVEVTDTGAGI-PP 632 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V + + L E + L + Sbjct: 633 AIIDKIFEPFFTTKEVGKGTGLGLSTVYGIVKQTGGTLQVESEPGKGSIFRVFLPR 688 >gi|294499356|ref|YP_003563056.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294349293|gb|ADE69622.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 496 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 69/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++ + D L S I HD+ +PI +I +E + + + + L+ + Sbjct: 244 LKSSVELQIQYEDNRKQLLSSISHDLRTPITSIVGYVEGIQDGVANTPDKLSKYLLTIST 303 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------- 112 + + +D +++ ++ + + D+ Sbjct: 304 KAKDMNALIDELFLFSKLDLHEIPFVFKKLNISAFMESYVQELQFEMSEHDIDVLFSNDS 363 Query: 113 ----------RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 + ++L+NL + + + + V +++E I +K NG Sbjct: 364 LTTLYAKADAEQLRRVLINLTTNSIKFMDKERRRIDIVLSATESELIIEVKDNGAGISPE 423 Query: 162 ---EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + + + L+K Sbjct: 424 ALAHIFDRFYRAEQSRNSNTGGSGLGLAIAKQIVERHGGDIWALSKLGEGTSIFFSLQK 482 >gi|269839398|ref|YP_003324090.1| multi-sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269791128|gb|ACZ43268.1| multi-sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 1171 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 28/238 (11%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---------- 54 + ++ + + + + HD+ +P+ ++ +LL + + + R Sbjct: 929 LRQTQEAVQMRSEFLAMVSHDLKNPLVSVKGMAQLLRRQLERGDCLDVQRLIEGLDKIDS 988 Query: 55 ---LSSMSAIIRLKFMRLAFGYTGSVDSLI----GLGDIEQVIEDFIAVDKRVQVSWTGE 107 S L RL G +D L V++ Sbjct: 989 VATRMSAQINELLDTARLQMGEPLELDVRPFDLVSLARQLVEQHARTTSKHNVELRTDLG 1048 Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160 ++ ++ +I L A P GG V ++V+ + + + + G Sbjct: 1049 ELVGEWDQLRIERVLSNLLSNAIKYSPEGGDVVVTVRTEEADGRSWAVVDVTDQGLGIPA 1108 Query: 161 PEKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E S I + V ++ ++ R+ + S L Sbjct: 1109 RELPRIFDRFYRASNVEGRIGGTGVGLASVRMIVEQHGGRISVTSQEGQGSTFSVWLP 1166 >gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 446 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 67/243 (27%), Gaps = 29/243 (11%) Query: 2 AKNICFNLSSMDL--VALL----CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQL 52 + L ++ L + L + I H+ +P+ AI ++L + + + + Sbjct: 155 RQREQIQLQNLRLLEASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQLNSQQVDM 214 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVDKRV 100 + + L + ++ + L +++ A + Sbjct: 215 VERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLAEAKKLSL 274 Query: 101 QVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 V + + + ++ L A GG + ++N +++ G Sbjct: 275 VVETDLQNTLIFNDSVRVRQILINLLANAVKFTESGGIWVEVKEITQNRLTITIRDTGIG 334 Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + VD + + L ++ E + Sbjct: 335 ISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLESKLGVGSIFKIE 394 Query: 213 LEK 215 L + Sbjct: 395 LPR 397 >gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 503 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 61/226 (26%), Gaps = 21/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR 63 L S + H++ +P+ ++ +L+LL + V+++ ++ I Sbjct: 270 ERKQLENEFISLVSHELRTPLTSLMGALDLLGTGQLGNLTPKGQHVLRIATTNTERLIRL 329 Query: 64 LKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + L +A +Q+ + L + Sbjct: 330 INDILDLERIKAGKITMQKVRCDAAELITQAAEALQEMAHQANLQLVVEPIAVALIADPD 389 Query: 117 KILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170 +IL L A G+V + Q ++ G + F + Sbjct: 390 RILQTLTNLLSNAIKFSEPQGRVWLRGQVEGEILHLQVQDQGRGIPADKLQTIFERFQQV 449 Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ E + L Sbjct: 450 DASDSRKKGGTGLGLSICRSIVNLHGGKIWAESVLGEGSTFHIHLP 495 >gi|189466068|ref|ZP_03014853.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM 17393] gi|189434332|gb|EDV03317.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 55/232 (23%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------- 52 + + S L + + H+I +P+ AI +L E ++ Sbjct: 52 LQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVLAETDNLSREERMIFLKEIND 111 Query: 53 -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVS 103 L F ++ D + + + Q + V+ Sbjct: 112 NKDFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEMCAAENAHPRPSGIQIEFVEKL 171 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + A+++ NL A +G + S N F + G + Sbjct: 172 PQCRLMIDRVRFAQVINNLVKNALKFTEQGSVKIGYRRLSNNNFYFYVADTGCGIDEESR 231 Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + E L Sbjct: 232 RAIFERFVKMNYNIRGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283 >gi|169826870|ref|YP_001697028.1| sporulation kinase A [Lysinibacillus sphaericus C3-41] gi|168991358|gb|ACA38898.1| Sporulation kinase A [Lysinibacillus sphaericus C3-41] Length = 488 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 17/216 (7%), Positives = 61/216 (28%), Gaps = 12/216 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR 63 ++++V + + I H+I +P+ ++ +LL ++ M L + Sbjct: 252 HALNVVGQMAASIAHEIRNPLTSLKGFTDLLKINADDESRMYLSVIDSELQRMEQILSEL 311 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 L + + ++ + + + + D + + +Q ++ + ++ L Sbjct: 312 LVLSKPSTMKVELLELDHIVKQVIEFMLPDALMKNIMIQYISNPNQVYIGGNENRLKQVL 371 Query: 123 FMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 + ++ + ++K G + + Sbjct: 372 MNLIKNAMESMNNGGTITVEMTTNDCAIVELTIKDEGVGMDSTTL-QNLFQPFYTTKSSG 430 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +V + E+ + Sbjct: 431 TGLGLAFVKKVIEEHDGIIGVNSELQKGTCFHLQFP 466 >gi|296129123|ref|YP_003636373.1| multi-sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] gi|296020938|gb|ADG74174.1| multi-sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] Length = 589 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 18/234 (7%), Positives = 61/234 (26%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56 A ++ + L + H++ +P+ ++ +ELL + + E + +I + Sbjct: 351 ATDVTAEREAARLKDQFVGLVSHELRTPLTSVLGYVELLLDGTEELTDEQREYLGIIDRN 410 Query: 57 SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + + F + + + A V ++ Sbjct: 411 ARRQLRLVSDLLLSAQVDAGTFAISPTDVDAAVVARASLASAAPAADAAGVTLAGDLRPA 470 Query: 110 DLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK-- 163 L + ++ + + +L + ++ G E Sbjct: 471 PLRADPVRLGQAIDNLVSNALKFTPTGGTVRVSVEPGDDGGAVVAVSDTGIGIPPDELAN 530 Query: 164 -FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + + + + + +L Sbjct: 531 LTERFYRASTATRRAIPGVGLGLSITRAVVEAHGGTVRIASTVGEGTTFTLVLP 584 >gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] Length = 785 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 55/221 (24%), Gaps = 18/221 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + + H+I +P+ AI +LL +E + + ++ I L+ Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPSAETAEEKKLYSDIINQNSDILLQLIND 479 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKEGVTLVFDNEEEDLLMEGDQNRI 539 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173 +++ N A G++ + +K G PEK I + V Sbjct: 540 MQVITNFLTNASKFT-YEGEIRFGFGRMDKDIRVYVKDTGIGI-EPEKVDHIFERFVKLN 597 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + ++ + + + Sbjct: 598 SFAQGTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP 638 >gi|49475714|ref|YP_033755.1| sensor histidine kinase [Bartonella henselae str. Houston-1] gi|49238521|emb|CAF27757.1| Sensor histidine kinase [Bartonella henselae str. Houston-1] Length = 825 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 20/241 (8%), Positives = 61/241 (25%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + + + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 438 EDKMMQNQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSFDPAYADLINIKNNAN 497 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111 A ++ + + ++ I + K + Sbjct: 498 RAAALVQQLLAFSRKQTLQPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSVEVD 557 Query: 112 SRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156 ++++NL + A ++ + + ++ G Sbjct: 558 QASFQRVIMNLVINARDAMPNGGIVTIATNNITKQQSAEFHHVGFGFGEYVQLTISDTGT 617 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + + + + L Sbjct: 618 GISAA-VQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSREGEGTTFHIFLP 676 Query: 215 K 215 + Sbjct: 677 R 677 >gi|160901352|ref|YP_001566934.1| osmosensitive K+ channel signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160366936|gb|ABX38549.1| osmosensitive K+ channel signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 904 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-------------LLDEVGIEDE 48 A+ + + L S + HD+ +P+ I + E +L++V I+ + Sbjct: 666 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTTILGAAEAAQRHVPPGGAADMLEQVRIQAQ 725 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 MQ + + + + +D ++G + + + Sbjct: 726 AMQRLVENLLDMARLQQGGVHLQREWLPLDEVVGSALRQMRARLGQHLVSTDVPASLPLL 785 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L+NL A P G + IS + E + S++ G + Sbjct: 786 QLDALLMERVLVNLLDNAAKYTPAGTPLAISARVQDGELLLSVRDGGPGLPSHLPVETLF 845 Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLL-PEIIDDHNVVLSALLE 214 + ST+ + V + + R+ + + Sbjct: 846 EPFTRGTAESTVSGIGLGLALVRSIVEAHGGRIEAAAARPGPGTIFTLRFP 896 >gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3] gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3] Length = 839 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 57/239 (23%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------LI 53 + + +S+ + + + H+I +P+ I E+L + + + Sbjct: 333 LVEAKEDAVSANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSKLSPNQQEVLGDIESSS 392 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSW 104 + L ++ G L + I +D + Sbjct: 393 HSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDVNIDSQT 452 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A + + + S+ G Sbjct: 453 PPQLFFDEYRVRQVLTNLLSNAIKFTSNGTITTDIAYTPMSMGRGKLECSVSDTGIGI-E 511 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PEK I + + + L + + + L Sbjct: 512 PEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGEGSTFTFCL 570 >gi|148976492|ref|ZP_01813188.1| osmolarity sensor protein [Vibrionales bacterium SWAT-3] gi|145964068|gb|EDK29325.1| osmolarity sensor protein [Vibrionales bacterium SWAT-3] Length = 420 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/209 (10%), Positives = 65/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 209 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDAYLAEGIISDTEECNEIISQFMDYLKP 268 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILLNLFMVAHA 128 + + + E V + + + + NL + A Sbjct: 269 VDRESFQAVFVDDIAREVSSSEGGYEVQIETDIPDTMKPALGNPIAMKRAVSNLVVNALR 328 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 KV+ + +++ NG + F G+ + + Sbjct: 329 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQIGKLFEPFTRGDTARGSEGTGLGLAI 388 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + +++ ++ + + Sbjct: 389 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 417 >gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429] gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429] Length = 465 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 74/240 (30%), Gaps = 30/240 (12%) Query: 4 NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLS 56 N+ + + L L + I H++ +P+ A+ E LL+ + + + + Sbjct: 223 NVTYEMELEKLKQLDKIKTEFVANISHELRTPLSAVKAYTETLLNMEIDPESQKEFLSII 282 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTG 106 + + +T + L + I + A + V++ Sbjct: 283 YEQSERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQDVKLEKEC 342 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARF 160 E +++S ++ +I ++ + ++ + ++ I ++ NG Sbjct: 343 EDVEISADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLEDILIIEVEDNGIGIPK 402 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + + + E + + + Sbjct: 403 SE-QEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKGSIFRVNIP 461 >gi|167644627|ref|YP_001682290.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347057|gb|ABZ69792.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 570 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 54/235 (22%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + H++ +P+ + L ++ + S Sbjct: 186 LEKAQIEAQEANRAKSAFLAMMSHELRTPMNGVLGMAHALGSTQLDARQADYVETIVQSG 245 Query: 61 IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 + + D +++V + V Sbjct: 246 DGLMAILNDILDLSKIEARKLEFEITPFDIRALGRQLQRVWSETARRKGLSLTLDVAPET 305 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +ILLNL A G + ++ G PE+ Sbjct: 306 PQWLAGDPARVRQILLNLVSNALKFTEEGRVALRIAPHAAGGVEITVSDTGAGM-SPEQQ 364 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + + LA R+ + + +L Sbjct: 365 AKLFTPFVQGDASIARRFGGTGLGLSICRELAEMMGGRVTADSRPGEGSTFTVVL 419 >gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1364 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVVTLEK 872 >gi|309779187|ref|ZP_07673950.1| periplasmic sensor signal transduction histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308921991|gb|EFP67625.1| periplasmic sensor signal transduction histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 505 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 70/237 (29%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + + + +L S H+ +P+G I + L + +E + IR Sbjct: 266 LQETLDKERRMAELQRNFVSMASHEFRTPLGVIDGQAQRLIRMRDALPPEVLEERCEKIR 325 Query: 55 LSSMSAIIRLKFMRLAFGY-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + + + L + ++ ++ V+ Sbjct: 326 AAVQRMTHLMDHLLDSSHWLDSTTPAAMRRTDFPLAALLTEVCEMHLEGTPSARIELCVE 385 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R + NL A P G V++ ++ + +++ G Sbjct: 386 TDEPNTFFGDARLLFQAFSNLVGNAVKYSPPGAPVSVRMRSDGDGVSVTVEDRGLGIPER 445 Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + V G + + Y V L+ ++ + + + L + Sbjct: 446 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSTFNVFLPR 502 >gi|282864272|ref|ZP_06273328.1| histidine kinase [Streptomyces sp. ACTE] gi|282560759|gb|EFB66305.1| histidine kinase [Streptomyces sp. ACTE] Length = 382 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 54/219 (24%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 156 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 215 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 VD + Q + R V DL + ++ Sbjct: 216 ISRIDSGRLELRRQPVDISAAVERHVQALTAAGQAPDRFLVRTRQPLPDLWADPDKVDQV 275 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFPEKFTQIVDGNVEST 175 L NL A + IS +E ++ G S Sbjct: 276 LGNLLENAVRHGEGTVTIDISPAPGGSETSATAVTVSDEGPGIPEESMGRVFTRFWRGSK 335 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y V + + + + +L Sbjct: 336 RGGTGLGLYIVKGIVEAHGGTITVDRGPGGGAEFRFILP 374 >gi|256842285|ref|ZP_05547789.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256736169|gb|EEU49499.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 622 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 59/229 (25%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +AK + + + + H+I +P+ AI +LL ++ + + LI++++ Sbjct: 387 LAKEKAEEADMLK--STFLANMTHEIRTPLNAIVGFSDLLGVEEDSELRQNYISLIKMNN 444 Query: 58 MS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 M + S + + V+ + Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLDACPDII 504 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166 +I +NL A +G + + F + G E Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCGIPKDELDNI 564 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + ++ L + + + L Sbjct: 565 FARFVQLSDFEQGVGLELAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 >gi|229012822|ref|ZP_04169991.1| hypothetical protein bmyco0001_32610 [Bacillus mycoides DSM 2048] gi|228748503|gb|EEL98359.1| hypothetical protein bmyco0001_32610 [Bacillus mycoides DSM 2048] Length = 516 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ + + + D+ Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAVMHSVHIIMDHFDYISDI 400 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167 + ++ L + ++ + + + G E+ ++ Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506 >gi|197120535|ref|YP_002132486.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170384|gb|ACG71357.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 498 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 63/229 (27%), Gaps = 17/229 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 A+ L + L L + + H++ + + I + L + ++ IR Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHELGNSLNVIRGYAAVTSRELPDDSPHRSDVEAIRR 314 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 A ++ + + + I + + V + + Sbjct: 315 EVTRAAALIERFLVFARARTVHPLVQPVEPILREAVEVLGPAAAHAKVERAVEVQPDLPE 374 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFT 165 L + + LNL + A ++ G ++V+ + ++ G E Sbjct: 375 LLADAELLRQAFLNLGVNAVQAMQDRGGGKLTVRALREPGGLVVEFQDTGPGI-DAEAAA 433 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V A + + + L Sbjct: 434 HVFEPFFTTKATGTGLGLAIVRQAAEAHGGTVEVAGVPGAGATFRVHLP 482 >gi|160914842|ref|ZP_02077056.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991] gi|158433382|gb|EDP11671.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991] Length = 525 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 K + L A L I HD+ +P+ +I + ++L ++ + + +QL Sbjct: 279 KKQSELRAKNEQLRADLLRSISHDLRTPLTSISGNADMLVSKEQELAQKDRLQLYEDIYD 338 Query: 59 SAIIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ + + D L + + ++ Sbjct: 339 DSLWLINLVENLLSITRMEEGAIRLKLEPQMIEDILYEALKHVSRKKKEHHLHVQIDDDL 398 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++++NL A P+G +T+ ++ + +G +K Sbjct: 399 -LMADMEAHLIIQVIINLVDNAIKYTPQGSNITLHAYQKEDMVTIEVYDDGAGI-PDDKK 456 Query: 165 TQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D S + + H + + H + L Sbjct: 457 EHIFDKFYRGNTKIVDSKRSLGLGLALCKSIVHSHGGEIHVMDRIPHGAMFYFTLP 512 >gi|108762122|ref|YP_633989.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108466002|gb|ABF91187.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 990 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 22/234 (9%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 K + + L +L + + + H+I +P+ AI + + L ++ E LI Sbjct: 741 RKAVDARMAHQDRLASLGRVAAGVAHEIGNPLTAIASLTQNLKYELEDPAAVQERAGLIL 800 Query: 55 LSSMSAIIRLKFMRLAFG------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ + L + ++ V + Sbjct: 801 QQCRRIDAIVRTLVGFSHEGTVGGQARPFTRVAVAPLLSEAVQLARLARKQHGVSFEHRC 860 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E ++ ++L+NL A + P G V + + + G+ E Sbjct: 861 PEGLEVQGDAQRLEQVLVNLLTNAMDASPEHGVVELEADIDGSAVRLRVMDRGHGI-PTE 919 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E+ + + + L Sbjct: 920 LAQRVFEPFFTTKGPGEGTGLGLALAAGIVREHGGTMQVDKRQGGGTSIVVSLP 973 >gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis] Length = 967 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 59/237 (24%), Gaps = 25/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K +++ + + + + H+I +P+ AI +LL E + + + +++ + Sbjct: 313 LEKAREAAVAANNAKSEFLASMSHEIRTPMNAIIGMSDLLWETTLTPKQSEYVKVFRNAG 372 Query: 61 IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 L+ + + + +V+ + + Sbjct: 373 ENLLQIINDILDLSKVEAGQITIEHIEFNLREQIEKTCEVMAFRAHEKGLELNCHLAEDI 432 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160 I +IL NL A G + K +F + G Sbjct: 433 PTSFIGDPVRLHQILTNLIGNAIKFTRTGEILLTGKRNKLPGKKGMLLFLVSDTGIGLPE 492 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + + L + E Sbjct: 493 EKQSIIFNIFSQVDSSTTRQYGGTGLGLAICKRLVELMDGEIWVESTPGKGSTFYFT 549 >gi|114567615|ref|YP_754769.1| signal transduction histidine kinase nitrogen specific-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338550|gb|ABI69398.1| Signal transduction histidine kinase nitrogen specific-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 635 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 M + I +S ++ +ALL + HD + + I ++ L + E + + Sbjct: 254 MEEEI-LKVSRLESLALLAGGLAHDFNNLLTIIVGNISLARIVGMDKQDSREYILEAEKA 312 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDL 111 ++ A + + + + + +F V + Sbjct: 313 ALQARGLTQQLLTFAQGGVPIRKTTSIKEFLMQSVNFCLCGSSVISEFCIAEELWNVFVD 372 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-------------KNENIFSLKINGNLA 158 + +++ NL + A ++P GG + I+ + G+ Sbjct: 373 EGQINQVINNLVLNAVQAMPDGGIIRITADNFYLDNEEGGLTLKKGQYVRLCFHDQGSGI 432 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + + ++ + E L Sbjct: 433 PL-EHQAKIFDPYFTTKKEGTGLGLSTSYSIIRKHGGYITCESQPGMGTSFIIYLP 487 >gi|331085451|ref|ZP_08334536.1| hypothetical protein HMPREF0987_00839 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407689|gb|EGG87187.1| hypothetical protein HMPREF0987_00839 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 583 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ I + L ++ ++ ++L Sbjct: 342 KEEAAVMAQNEQLRANLLRAISHDLRTPLTVISGNASNLLSNEDKFDKETKLRLYGDIYD 401 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + SV+ + + + + ++ + E Sbjct: 402 DSMWLINLVENLLSVTRIEDGRLNLKMSVELIDEVTAESIRHLPRKSAEYQIHLKKNDEF 461 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++NL A P G + ++ Q +N S+ NG E Sbjct: 462 LMAKMDVRLILQVIINLIDNALKYTPAGSVIEVASQKKENMVEVSVSDNGPGI-SAEAKG 520 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + T S + + ++ + E H + + L Sbjct: 521 HIFEMFYTGTHKIVDSRRSLGLGLSLCRSIIEAHEGSIRVEDNHPHGCIFTFTLP 575 >gi|291549940|emb|CBL26202.1| Osmosensitive K+ channel histidine kinase [Ruminococcus torques L2-14] Length = 899 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + L + D QL Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDFFDNDTKKQLYMDIYD 717 Query: 59 SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + + D + + + + + + V E Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRITEDLMDDVITEALHHINRKSEEHHISVESKEEF 777 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++N+ A P+ + I + + I S+ +GN E Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKRGKQAIVSISDDGNGI-ADEIKP 836 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + S + + + + L H V + L Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891 >gi|258626569|ref|ZP_05721405.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603] gi|258581160|gb|EEW06073.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603] Length = 573 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 65/246 (26%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + + + + L L + + H++ +P+ A+ +++L +V Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRSDSTSYQV 244 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + + E S +IL N+ A + G+V I + ++ ++ Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKK-GRVDIQLNYIEDGIDIQVQDT 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + + D + Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTINVDSKIDIGTL 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLRIP 428 >gi|225375836|ref|ZP_03753057.1| hypothetical protein ROSEINA2194_01468 [Roseburia inulinivorans DSM 16841] gi|225212271|gb|EEG94625.1| hypothetical protein ROSEINA2194_01468 [Roseburia inulinivorans DSM 16841] Length = 500 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + N ++S +L S I HD+ +PI A+ E L + D+ ++ I Sbjct: 250 LKDNAEEKINSEKENKMLISNIAHDLKTPITAVKGYAEGLMDGVADTPEKRDKYIRTIYN 309 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------KRVQV 102 + + + L + + + Sbjct: 310 KANEMDTLINELTLYAKIDTNRIPYNFAKINVGEYFNDCIEEIGLDLESKNIGLAYFNYT 369 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFP 161 + + I + +++ N+ + L + + I ++D + ++ NG Sbjct: 370 DGSTQIIADPEQLRRVIHNIIGNSIKYLDKQRGLINIRIKDVGDFIQVEIEDNGRGIAAA 429 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ ++ + V+ ++ K Sbjct: 430 DLPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKESIGTVMYFVIRK 488 >gi|192362033|ref|YP_001983813.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190688198|gb|ACE85876.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 1321 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55 A++I + + A S + H++ +P+ AI +L +L ++Q+ Sbjct: 927 AQDISESKRVDKMKAEFISTVSHELRTPLTAISGALGILTAGGAGTLPEAATRMLQIAHN 986 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 +++ I + + + L F S Sbjct: 987 NALRLIHLVNDLLDMEKLVAGKMQFEIHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDS 1046 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 S ++L N A P G+V ++++ ++ +G + Sbjct: 1047 DDAMVSVDSLRLEQVLANYLSNAAKFSPPNGQVWVNIRRRMGSVRVTVTDHGRGIPEAFR 1106 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ + + L Sbjct: 1107 ARIFHKFSQADSSDSRQKGGTGLGLAICKELIERMGGKVGFDSAEGQGASFYFELP 1162 >gi|254228540|ref|ZP_04921965.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|151938922|gb|EDN57755.1| conserved hypothetical protein [Vibrio sp. Ex25] Length = 365 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 134 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 192 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 193 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIVIERDYDPSLPEILMDA 252 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I + K + NG Sbjct: 253 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 311 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 312 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 364 >gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 519 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 77/241 (31%), Gaps = 29/241 (12%) Query: 4 NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51 N + DL +L S I H++ +P+ +I +EL+ + + + + Sbjct: 279 NKELEKVNDDLKSLDVMKNEFLSNISHELKTPLVSIKGYVELVFDGSLGTLNEQQKKAVN 338 Query: 52 LIRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ +S ++ + + + I + V ++ Sbjct: 339 IVLRNSERLRRLIESLLFISGLESRAIQYHIEKVRIAEIIDNVVNDVNLQIEDKGLLIEN 398 Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++ ++A++ L A P G++ ++ + +++ +K G Sbjct: 399 NVPENLPLINGDKARLSDMLTNLVDNAIKFTPSEGRIILNAYEEEDDLHIEVKDTGIGIP 458 Query: 160 F---PEKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + Y + +K + E ++ + L Sbjct: 459 KELIPNLFQRFYQVDASIKRRYGGTGVGLYICKNIVEAHKGNIWIESEEEKGTTVHIRLP 518 Query: 215 K 215 + Sbjct: 519 R 519 >gi|127514566|ref|YP_001095763.1| osmolarity sensor protein [Shewanella loihica PV-4] gi|126639861|gb|ABO25504.1| integral membrane sensor signal transduction histidine kinase [Shewanella loihica PV-4] Length = 436 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 73/217 (33%), Gaps = 8/217 (3%) Query: 4 NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60 + ++ ++ ALL + I HD+ +P+ I + E++ ++ +++ ++ I Sbjct: 220 QMSRSMQQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEEDEYLKEGIVHDIEDMDAII 279 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + ++R + + L E + + ++ E + +I+ Sbjct: 280 NQFIAYIRQDQEANRELVQINDLLQDIAQAETNRDGEIVLALNECPEIPMQAVAVKRIIS 339 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID 177 NL A +++ S F ++ NG + F G+ Sbjct: 340 NLVENAFRYGNGWVQLSSSFD--GRRVGFGVEDNGPGIPSDQIPKLFQPFTQGDSARGSV 397 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ +++ + + L Sbjct: 398 GSGLGLAIIKRIVDRHQGQVVLTNRPEGGLHAQVWLP 434 >gi|288958347|ref|YP_003448688.1| two-component sensor histidine kinase Nitrogen regulation protein [Azospirillum sp. B510] gi|288910655|dbj|BAI72144.1| two-component sensor histidine kinase Nitrogen regulation protein [Azospirillum sp. B510] Length = 772 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 66/227 (29%), Gaps = 28/227 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGI-------------EDEVMQLIRLSSMSAII 62 A + RI H+I +P+ I S E L + D +++ + Sbjct: 516 ADVARRIAHEIKNPLTPIQLSAERLRRKYLKEISSDTEVFTMCTDTIVRQVDDIRRMVDE 575 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 F R+ V+ + + + R + ++ + +I L Sbjct: 576 FSAFARMPQPVMKPVNINDLVRQAVFLQSSAHSGKIRFDTRLPQGPLTVACDSRQISQAL 635 Query: 123 FMVAHASLPRGGKVTISVQ--------------DSKNENIFSLKINGNLARFPEKFTQIV 168 + + + D + + +++ NG E+ ++ Sbjct: 636 TNLLQNAADAIEGRPPAADGAVLPPGEVAIAVEDDGEKVVVTVEDNGKGLPGGEQRDRLT 695 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 + V + + V + ++ L E D ++ ++ Sbjct: 696 EPYVTTRAKGTGLGLAIVKKIMEDHGGVLTLEDRDGGSGARVTLVIP 742 >gi|228475150|ref|ZP_04059876.1| alkaline phosphatase synthesis sensor protein [Staphylococcus hominis SK119] gi|314936206|ref|ZP_07843553.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp. hominis C80] gi|228270761|gb|EEK12163.1| alkaline phosphatase synthesis sensor protein [Staphylococcus hominis SK119] gi|313654825|gb|EFS18570.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp. hominis C80] Length = 565 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 58/220 (26%), Gaps = 20/220 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 +L + + H++ +PI +I E L ++ + + +I S + Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLEVFLNIILKESNRIESLVMD 398 Query: 67 MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + Y D Q + + + ++ + + Sbjct: 399 LLDLSHIEQQTEIETTYVNLSDLAHNTIHNLQTQAKYKNIAIKSEIENDVIIEAHEGKLS 458 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171 +++ NL A KV + V + ++ G + F + + Sbjct: 459 QVITNLLSNAINYSYENNKVIVRVYREDIKVNLEIQDYGIGIDKKDQKHIFERFYRVDKA 518 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + ++ E + + Sbjct: 519 RSRDSGGTGLGLSITKHIVEALHGTIMVESELNKGSLFRV 558 >gi|284031361|ref|YP_003381292.1| histidine kinase [Kribbella flavida DSM 17836] gi|283810654|gb|ADB32493.1| histidine kinase [Kribbella flavida DSM 17836] Length = 505 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMS 59 ++ S D + + H++ +P+ +I EL + G + M+ I + Sbjct: 269 KRSEEHARQSEDRMRRFVADASHELRTPLTSIRGFAELSRQRGGSADPATMRRIEEEAKR 328 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108 + + + L D+ + D + VQ Sbjct: 329 MGLLVDDLLLLARLDQQRPLQYQPVDLLTLAGDAVHDVHAVQPDRVVSLRILPGSSAPVV 388 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++L NL A P +T++V E + + G+ E+ ++ Sbjct: 389 EGDEARLRQVLGNLVSNALHHTPAEAAITVAVGTRDGEAVLEVADRGDGL-SDEQKARVF 447 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ R+ + L Sbjct: 448 ERFYRADSARTRATGGSGLGLSIVAALVAAHRGRVTVTDTPGGGATFTVTLP 499 >gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 1205 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 54/240 (22%), Gaps = 29/240 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + + + + H+I +P+ I LL E +E ++ S Sbjct: 547 MAKEQAESANRAK--GEFLATMSHEIRTPMNGIIGMSGLLLETKLESSQRDMVDAIRTSG 604 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSW 104 + + ++ + L + ++ + + + Sbjct: 605 EALMDIIEDILDFSKIEARRLDLVEETFSLDAVIDGVVDLLNHKIQSKGLTMGVILDPDV 664 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 + +IL NL A N F++ G Sbjct: 665 PLSMRGDAGRLRQILFNLMGNASKFTDEGEVNLFISVARGPGGNNMLEFTVADTGIGMTP 724 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + L + E L Sbjct: 725 QQI-ERLFQPFSQVDSSSTRRFGGTGLGLVISKRLVEMMGGAIHVESTPGKGSRFFFRLP 783 >gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 522 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 56/224 (25%), Gaps = 27/224 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ A+ E L ++ + Q+I + ++ + Sbjct: 275 FVANVSHELRTPVAAVQGFAETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLA 334 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKIL 119 L + A R ++ ++ Sbjct: 335 RLESPEPGLQRERFDLRDSAVQAAERFRPRLEAAGLRLEVQSPPEPVPVWADRHRLDQVW 394 Query: 120 LNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--G 170 NL A P GG VT Q + + ++ G P F + Sbjct: 395 TNLLENARQYTPVGGTVTVAVGREGQGHQAMAVGEVRDTGRGIPPDVLPRIFERFYRVDP 454 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E V+ + Sbjct: 455 GRSRAAGGTGLGLAIVKHIIEAHGGVVGAESQLGAGTVIRFRIP 498 >gi|297197387|ref|ZP_06914784.1| sensor histidine kinase [Streptomyces sviceus ATCC 29083] gi|297146700|gb|EDY58849.2| sensor histidine kinase [Streptomyces sviceus ATCC 29083] Length = 605 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 20/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----- 58 L + + S I H++ SP+ I LE+ + ++ + + L L Sbjct: 370 ERRERLEAQRKA--MVSDIAHELRSPLTNIRGWLEVTRDGVVDPDPVLLASLHDEALVLQ 427 Query: 59 --------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 A +RL + L + +V D V R V Sbjct: 428 RVIDDLQDLADADAGTLRLHREPVRCDELLQQVAAAHRVAADAARVGLRTDVEGEPWLDA 487 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + L NL A P GG VT+S + ++++ + G + F + Sbjct: 488 DPVRMRQALGNLVSNALRHTPAGGTVTLSARRDGDDSVLEVADTGTGIAPDDLPHVFDRF 547 Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L + + V + + Sbjct: 548 WRAEKSRSRRTGGSGLGLPIVRHLVAAHDGTVAAASEPGTGSVFTLRMP 596 >gi|153807221|ref|ZP_01959889.1| hypothetical protein BACCAC_01499 [Bacteroides caccae ATCC 43185] gi|149130341|gb|EDM21551.1| hypothetical protein BACCAC_01499 [Bacteroides caccae ATCC 43185] Length = 1337 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 25/218 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVM-------------------QLIRLSSMSA 60 + I H+ +P+ I +E L +V + +L+ M Sbjct: 817 ANISHEFRTPLTLIIAQIEALLQVNSLSPFLRSRLTKIYRNTFQFKELISELLDFRKMER 876 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + D + + R+ K+ Sbjct: 877 GKLHLNVCQMDLIPYLRQIHQDFTDQANLQNIQFIFHTE---AENLLCWFDGRQLRKVFT 933 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID 177 NL A P GK+ +S+ D + + +G P F + + + Sbjct: 934 NLLSNAFKHTPEKGKIELSITDKGDSIYIKVIDSGKGIPPKALPFIFDRFYQADENFSSP 993 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + ++ + D+ + + +L K Sbjct: 994 GSGIGLALSKGIVELHHGQIEVQSAIDYGSIFTVILPK 1031 >gi|115372683|ref|ZP_01459990.1| PAS [Stigmatella aurantiaca DW4/3-1] gi|310823870|ref|YP_003956228.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370404|gb|EAU69332.1| PAS [Stigmatella aurantiaca DW4/3-1] gi|309396942|gb|ADO74401.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 425 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDE---------------VGIE 46 L L +L + + + H+I +P+ + +++ LL + + Sbjct: 190 HERALEQEKLASLGKMAAGVAHEINNPMSYVTSNVNWLLRDLRKVPQLPRSLQEYVDDVL 249 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105 + IR + + +F R D L ++ + + Sbjct: 250 PATLDGIRRVNAIVMDLRRFARGDSEAFTEFDFDAELQSALRIAQGELSHCQVETDLQKI 309 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 G + ++ ++L+ LF+ A ++ G+V IS + + ++ G E Sbjct: 310 GTFVGRPQQITQVLVQLFVNAGHAVTDTGRVLISSRREGDMARVDVRDTGVGM-SSETMK 368 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + R+ E + L Sbjct: 369 RLFEPFFTTKPPGKGMGLGLAAAHGIVTSHGGRIEVESELQKGARFTLFLP 419 >gi|295704708|ref|YP_003597783.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294802367|gb|ADF39433.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 496 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 70/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++ + D L S I HD+ +PI +I +E + + + + L+ + Sbjct: 244 LKSSVELQIQYEDNRKQLLSSISHDLRTPITSIVGYVEGIQDGVANTPDKLSKYLLTIST 303 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------- 112 + + +D +++ ++ + + D+ Sbjct: 304 KAKDMNALIDELFLFSKLDLHEIPFVFKKLNISAFMESYVQELQFEMSEHDIDVLFSNDS 363 Query: 113 ----------RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 + ++L+NL + + + + V +++E I +K NG+ Sbjct: 364 LTTLYAKADAEQLRRVLINLTTNSIKFMDKEKRRIDIVLSATESELIIEVKDNGSGISPE 423 Query: 162 ---EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + + + L+K Sbjct: 424 ALAHIFDRFYRAEQSRNSNTGGSGLGLAIAKQIVERHGGDIWALSKLGEGTSIFFSLQK 482 >gi|290954713|ref|YP_003485895.1| sensor kinase [Streptomyces scabiei 87.22] gi|260644239|emb|CBG67318.1| putative sensor kinase [Streptomyces scabiei 87.22] Length = 232 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 18/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVMQLIRLSSMSAIIRL 64 + S I H++ +P+ I LE+ + + +I A Sbjct: 8 MVSDIAHELRTPLTNIRGWLEVTRDGLVEPDLELIASLHDEALLLQHIIDDLQDLAAADA 67 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + L + D + + + + ++L NL Sbjct: 68 GTLALHREPVRADDVVAQTVSAHRARAESSDIRLCTHTDPGLVLDADPVRMRQVLGNLTS 127 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179 A P GG VT++ + + + ++ G+ + F + + Sbjct: 128 NALRHTPAGGTVTLTARQDGDLAVLIVEDTGSGIAADDLPHVFERFWRAEKSRSRRTGGS 187 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V ++ + + V + L + Sbjct: 188 GLGLSIVRQFVEAHEGTVTVDSDAGKGCVFTLGLPR 223 >gi|228901708|ref|ZP_04065881.1| hypothetical protein bthur0014_28930 [Bacillus thuringiensis IBL 4222] gi|228857937|gb|EEN02424.1| hypothetical protein bthur0014_28930 [Bacillus thuringiensis IBL 4222] Length = 436 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S + H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDVSHELRTPTSVIISQCEYALSQKNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + + Sbjct: 256 SRKISTLISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASIDITINIEK 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|261406955|ref|YP_003243196.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261283418|gb|ACX65389.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 460 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 66/243 (27%), Gaps = 31/243 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLS 56 M + + + S + H++ +P+ AI + L E E++ +Q + Sbjct: 220 MGRQLHDYIQYQK---QFVSNVSHELKTPLAAIRGFSQYLVEGENENKELQKIYAHLLQE 276 Query: 57 SMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106 S + + L + + L + A DK +++ + Sbjct: 277 SDRLTRLINELLLLSRFDKAGSNELEARKTEMNELIQQVAMSMGAKAKDKGIEIMFREAE 336 Query: 107 -----------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + NL A + + + + +E + ++ G Sbjct: 337 AEPEDKPMTRVHANVNPMLMSHAIANLVDNAIKYSGSPSLIELKLDHTPSEVVIRIRDQG 396 Query: 156 NLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E + ST + + + E ++ + Sbjct: 397 IGIAGDELERVQERFYRAKNASTASGSGLGLSICKEIVERFNGYIDMESQIGEGTTVTIV 456 Query: 213 LEK 215 L + Sbjct: 457 LPR 459 >gi|153833906|ref|ZP_01986573.1| osmolarity sensor protein EnvZ [Vibrio harveyi HY01] gi|148869744|gb|EDL68721.1| osmolarity sensor protein EnvZ [Vibrio harveyi HY01] Length = 430 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 66/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFMVAHA 128 + + + E V+ ++ T + + NL + A Sbjct: 280 VNKESFEQVDINTITSDVATSEGGYEVEIETDLNPTMPTAKGSPIAIKRAVSNLVVNALR 339 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 K++ V K ++ NG + F G+ + + Sbjct: 340 YGNGWVKISTGVTADKQLVWVCVEDNGPGIEQSQIAKLFEPFTRGDTARGSEGTGLGLAI 399 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + Sbjct: 400 VKRIVSQHSGSVVVRNRSEGGLSAQISFP 428 >gi|226227766|ref|YP_002761872.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca T-27] gi|226090957|dbj|BAH39402.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca T-27] Length = 479 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 20/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67 + + H++ +P+ I +E L + + + +Q++ S + + Sbjct: 249 FVANVSHELRTPLTVIGGFVETLQDEQLPPELRTQFLQMVDASVRRMQRIVDDLLDLSRI 308 Query: 68 RLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 ++ + + I + A + V + + L Sbjct: 309 ESGGWLPNPIELDVAVLAAEIIAPLERPAAAKGVALHVEIAPGAERVYADPTAARQILTN 368 Query: 125 VAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTID 177 +A +L +++ ++ ++ G P F + Sbjct: 369 LAENALRHTPTGSVTLLASPAEGGVWIGVRDTGVGIGAEHLPRIFERFYRADPARSREAG 428 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + R+ + + A L K Sbjct: 429 GTGLGLSIVRHLTEAHGGRVRADSTLHVGTTIQAWLPK 466 >gi|251794143|ref|YP_003008874.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247541769|gb|ACS98787.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 624 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 15/228 (6%) Query: 1 MAKN---ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIED 47 M S L V L + + H+I +P+ + L+L L+ G+ Sbjct: 375 MRSRNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQHTGKMNLEHTGLML 434 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + I L +I K F D + + V + + Sbjct: 435 SELDRINLIVGEFLILAKPQATRFATKDVRDVFRSVLSLIDSEGHLHNVAFSTSFTESAC 494 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ +NL ++P GG++ + ++ S+ G + + Sbjct: 495 LVSCEENQLKQVFINLLKNGIEAMPSGGRIHTHIASKNDQITISITDEGIGI-PEDMIPK 553 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + H ++ + + + + L Sbjct: 554 IGNPFFTGKESGTGLGMMISQRIIHSHQGLMEIKSQVNVGTTIIITLP 601 >gi|218781351|ref|YP_002432669.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762735|gb|ACL05201.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1011 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + + ++ + +L I HD + + + S+ L +Q + + Sbjct: 636 ETELQKMDKLESIGVLAGGIAHDFNNILTGVLGSISLAKLYGQGNEKVVSKLQEAERACL 695 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----R 113 +A + + V L ++ + F+ +V+ ++ + + Sbjct: 696 TARELTQQLLTFARGGAPVKESASLAELLKECVGFVLSGSKVRCEYSVPEDLMPAEVDAS 755 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLARFP 161 + +++ NL + A ++P+GG + IS Q+ S++ G Sbjct: 756 QIRQVIQNLVINATQAMPQGGILYISAQNVEVEEKDNLPLPPGQYVEMSIRDQGEGIPPE 815 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I D + + + + ++ + E + + L Sbjct: 816 DLSN-IFDPYFTTKQEGSGLGLATAYSIVKKHDGHIGVESVLGEGTSFTVYLP 867 >gi|146309956|ref|YP_001175030.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp. 638] gi|145316832|gb|ABP58979.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 758 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + M V L + HD + + I SLEL + + + ++ Sbjct: 387 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELANPDSPDAPRITRALKAAERGAL 446 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + + + + +++ Sbjct: 447 LTQRLLAFSRKQSLHPHAVEMKPLLENLGELMCHSLPATITLDIEAQHPAWPAWIDVSQL 506 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ E + Sbjct: 507 ENAIINLVMNARDAMEGEGGIIRIRTWNQRVTRSDGRRQDMVALEVIDHGSGM-SQEVKS 565 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 566 RVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 617 >gi|148656487|ref|YP_001276692.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148568597|gb|ABQ90742.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 646 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 70/234 (29%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRL 55 + + + S L A+ + I H+ + +G + EL + +D+ + +IR Sbjct: 409 LRQKQAELIQSSKLAAVGTFAAGIGHEFNNLLGGMLGYAELGRSASDSAEKDQALDVIRQ 468 Query: 56 SSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + ++ + D + + ++ + + + T Sbjct: 469 ACQRGRSIMRGLLTFARRSEHRRDIHHLADVIAETLTLVEIDLRKLNITLERVIEPTPAI 528 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167 + S + A++LLNL A ++ R G + S+ G +I Sbjct: 529 LCDSGQIAQVLLNLITNARDAIGRDGGTITVSLRQCGAYVELSVSDTGAGI-PEHVRDRI 587 Query: 168 VDGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + ++ + E + L Sbjct: 588 FEPFVTTKGALGTSNTPGTGLGLSVSYGIVKDHGGDIRFETEIGVGTTMMVRLP 641 >gi|66043529|ref|YP_233370.1| sensor histidine kinase [Pseudomonas syringae pv. syringae B728a] gi|63254236|gb|AAY35332.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 440 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 272 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 331 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 332 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430 >gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 631 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHTTYKGLSVI 294 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M + L E E + K Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILKLHV 354 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ NL A P G++ +S++ + S+ +G+ Sbjct: 355 PPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 414 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473 >gi|150391004|ref|YP_001321053.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950866|gb|ABR49394.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 458 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 81/229 (35%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR 54 M K + + L A+ L S I H+I +P+G I + ++ E E +++I Sbjct: 221 MVKRLEGQVRRGERLAAVGELASGIAHEIRNPLGIIKTISQTINKEVEDEEIKEGLEIIE 280 Query: 55 LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106 A L F + ++ L ++ + F ++ Sbjct: 281 HEIERANKVVQGLLDFSKPNKVKIEKINLNRLLDELVMITRKFAEQQDVAIELSNMNDAY 340 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 E S + + L+N+ + ++ +GG++ IS++ ++ E ++ + K G Sbjct: 341 EIEGDSDKLKQALINIILNGIQAMEQGGRLEISLKKTEKEESVITFKDEGRGIEKR-IVD 399 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + + + E++ + + + L Sbjct: 400 QIFNPFFTTKEKGTGLGLSITHRIIEEHQGSIEVTSEINRGTEIGIRLP 448 >gi|327478670|gb|AEA81980.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 992 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + ++I + + L S + H++ +P+ +I +L L+ ++Q++ ++ Sbjct: 748 LVRDITERKRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPTMLQMLTIAH 807 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111 +++ + + V + L + + + + + Sbjct: 808 QNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPL 867 Query: 112 --------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L NL A P GG V++ Q ++ G PE Sbjct: 868 PTLQLIADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQRGAWVRIWVRDQGPGI-APEF 926 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + L R+ + H L Sbjct: 927 HARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELP 983 >gi|310827868|ref|YP_003960225.1| two-component sensor histidine kinase [Eubacterium limosum KIST612] gi|308739602|gb|ADO37262.1| two-component sensor histidine kinase [Eubacterium limosum KIST612] Length = 305 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 27/233 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMS 59 + KN N L+ S + HD+ +P+ ++ L++L+ +E E + ++ Sbjct: 79 LKKNERANRQ------LMTS-LSHDVRTPLTSLIGYLDVLNSGKVEAEERKRYLGIAWSK 131 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SW 104 A ++ + F + E+ I + + Sbjct: 132 AYDLKDYVDILFDWFKLESKEYHFYFEERDICELTRDGIIGWIPLFEENGLNYTFHIPDE 191 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + +R +IL NL A + K+ +K +G+ + Sbjct: 192 EYKVWIDARSWNRILNNLIQNAVKHSGCSALEIGVERTQKSM-KLWVKDDGSGIVPDQLP 250 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ + + + L EN +L + + + L Sbjct: 251 YIFERLYKCDASRSGAGSGLGLAITKELVQENGGTILADSALCQGTIFTVTLP 303 >gi|300702447|ref|YP_003744047.1| sensor histidine kinase in two-component regulatory system wtih kdpe, regulation of potassium translocation [Ralstonia solanacearum CFBP2957] gi|299070108|emb|CBJ41397.1| sensor histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Ralstonia solanacearum CFBP2957] Length = 937 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55 A++ + S L L + + HD+ +P+ + E L +Q + Sbjct: 691 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLVGMAETLLRTQPPLSPLQAEAAEAIGEQ 750 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDL 111 + ++ + +A + + IE+++ + V V + Sbjct: 751 ARRMRVMVTNLLDMARLQNHDIKLRLEWQSIEELVGAALKGTPLPAHTVVVDDLADLPLQ 810 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPE- 162 + + L + + T +E ++ +G Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVEHDTVRGDEMRVRVRDHGPGVPAGAE 870 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ ES + + + R+ E D L Sbjct: 871 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPTDGGACFVVALP 924 >gi|228996539|ref|ZP_04156178.1| hypothetical protein bmyco0003_11260 [Bacillus mycoides Rock3-17] gi|229004190|ref|ZP_04161991.1| hypothetical protein bmyco0002_11550 [Bacillus mycoides Rock1-4] gi|228757051|gb|EEM06295.1| hypothetical protein bmyco0002_11550 [Bacillus mycoides Rock1-4] gi|228763171|gb|EEM12079.1| hypothetical protein bmyco0003_11260 [Bacillus mycoides Rock3-17] Length = 400 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57 + N L+ + + I H++ +P+ + L+LL +E +L R Sbjct: 173 QEELINAEKFHLIGEMAASISHEVRNPLTSTKGFLQLLQSEECSEEDRKLYTEIAIRGIE 232 Query: 58 MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A + L + I + + S Sbjct: 233 QANHVLTDYLTFAKPSIEKEQVLQIEDELLHAVSLITPLANLTNVRITYTKQSNIFCISG 292 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + +++ S + ++K G E+ ++ Sbjct: 293 EKQKFNQCLLNILKNCIEAMPKGGDLILTLIPSHTQIQLAIKDTGIGMDL-EQLKRLGSP 351 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ D Sbjct: 352 FYSTKEKGTGLGMMVVFSIVKAMGGKIDISSEKDIGTTFLLTFP 395 >gi|118616307|ref|YP_904639.1| two component system response phosphate sensor kinase, PhoR [Mycobacterium ulcerans Agy99] gi|118568417|gb|ABL03168.1| two component system response phosphate sensor kinase, PhoR [Mycobacterium ulcerans Agy99] Length = 481 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ I EL + D ++ I + + + + Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLTLARLDVQRPLE 317 Query: 81 IGLGDIEQVIEDFIAVDKRVQV-----------SWTGEKIDLSRERAKILLNLFMVAHAS 129 D+ + D + + + T E + ++L NL A Sbjct: 318 RNRVDLLVLAADAVHDARAIDRKRAITVEVLEGPGTPEVLGDEPRLRQVLSNLVGNALQH 377 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V + + + G + F + + + Sbjct: 378 TPDSADVTVRVGTAGENAVLEVADKGPGMPAEDAARVFERFYRTDSSRARASGGTGLGLS 437 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 438 IVHSLVKAHGGDVTLTTAPGEGCCFRVTLPR 468 >gi|298209253|ref|YP_003717432.1| sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] gi|83849180|gb|EAP87049.1| sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] Length = 364 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 15/227 (6%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 K + + ++ + + I H++ +P+ I EL+ + D++++ Sbjct: 138 KRQMEHADRLGILGEITAGIAHELNTPLANILGFSELIKDEVKGNSNIAEDLDKIIKNAI 197 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWTGEKID 110 S L F ++ + + + + + Sbjct: 198 FSREVVKKLLFFSCEMPQEMQELNLVTSVYNSLSLLEASFKKANVEYNVKIEDKELFVRA 257 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + +I+ NL + A P G VTISV ++K +F + G E ++ Sbjct: 258 DKVQLMQIIFNLIINAIYFTPEHGLVTISVSETKMHIVFKVSDEGLGL-PEEIIEKVFQP 316 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + +K + + + L K Sbjct: 317 FFSTKPTGEGSGLGLSVVHGIVTSHKGTITAKNNKIKGATFTVCLPK 363 >gi|229177965|ref|ZP_04305337.1| hypothetical protein bcere0005_13280 [Bacillus cereus 172560W] gi|228605453|gb|EEK62902.1| hypothetical protein bcere0005_13280 [Bacillus cereus 172560W] Length = 423 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESISPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFVRITFTDNGIGIHPA-IQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 928 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++ + + + + H+I +P+ + +LL + G+ E +L+ SA Sbjct: 285 LVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDTGLSPEQRELLDALQSSA 344 Query: 61 IIRL--------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104 + + ++ + V ++ V Sbjct: 345 NALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQEQGLELIVDAEPAL 404 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +I+LNL A P G V Q + S++ G + Sbjct: 405 PARVLGDPVRFRQIVLNLLSNAVKFTPAGEVVVRVRQRADEHIELSVRDTGVGVPEERRE 464 Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DG+ + LA +L E D V S L Sbjct: 465 AIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEPGDQGGSVFSVSLP 519 >gi|237653560|ref|YP_002889874.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|237624807|gb|ACR01497.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 386 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 61/238 (25%), Gaps = 26/238 (10%) Query: 2 AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49 L + L A+ + + + H + +P+ A L + ++ Sbjct: 138 TDTHRMRLTAERNERLAAMGEMVAGLAHQLRTPLAAALLYTGNLRQPELDPAQRAMVADR 197 Query: 50 -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ +R L F R L ++ +E + + Sbjct: 198 ALERLRYLERLIRDMLLFARGDSAGRQRFAVCELLAELAHTLEPVARARQVAFAADCACG 257 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK------------NENIFSLKINGN 156 K L + + + +++ F+++ +G Sbjct: 258 AAELVGDRKALGGALTNLLENGIQACEAGGTLRCEAVLVGAADAGVGAPAVRFTVRDSGR 317 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + + + +A + + + ++ Sbjct: 318 GI-APELQERLFEPFFTTRAEGTGLGLAIARGVARAHGGDITLRSAPGQGAEFTLVVP 374 >gi|116748078|ref|YP_844765.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697142|gb|ABK16330.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 588 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 57/237 (24%), Gaps = 29/237 (12%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------------DEVMQ 51 L + L ++ L + + H+I +P+ I +L+ ++ E E M Sbjct: 338 RQLLQASKLASIGELAAGVAHEINNPLAVILTENQLVRDMADEAASFDGEFKQQLYESMD 397 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTG 106 I + + S ++ + + + ++ + Sbjct: 398 QIDAQIHRCSRITQNLLRFSRRIKSKAEMVDINACFAEVIELIQKRAQTSGVQIVAEFEP 457 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLAR 159 L + ++ L + + +N + G+ Sbjct: 458 GLPSLLADAFQLEQVLLNCVTNGIDAHEGKPYGTIRVKTRHDEKRNGIEIRISDTGSGI- 516 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + L Sbjct: 517 PPEHLDRIFDPFYTTKPVGKGTGLGLSISYSIIKSLGGEISVNSEVGKGTDFIIFLP 573 >gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1349 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 65/237 (27%), Gaps = 28/237 (11%) Query: 6 CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58 + L L S + H+ +P+ + LE LL++ + + + ++ Sbjct: 327 QERARAEALAELDRAKTTFFSNVSHEFRTPLTLMLGPLEELLNDADVTPAQRRELDVTHR 386 Query: 59 SAIIRLKFMRLAFGYTGSV---------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103 +A+ LK + +T + ++E + Sbjct: 387 NALRLLKLVNTMLDFTRIEAGRAEATFQATDLAALTADLASAFRSLVEGAGLQFEVTCPP 446 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + K++LNL A G +D + + +G + Sbjct: 447 LSEAAYVDHGLWEKVVLNLLSNAFKFTFEGRIRVTLREDEGHF-TLQVTDSGTGIPAADL 505 Query: 163 --KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G + + I V L + + + + L K Sbjct: 506 PRVFERFHRVEGARGRSFEGTGIGLALVRELVTLHGGDIRVDSEVGVGTTFTVTLPK 562 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 + + ++ A + S HD+ P+ I + LL D+ + Sbjct: 1111 THQLERSNRELEQFAYVAS---HDLQEPLRTIGSFTNLLARRYAGQLDDRADQYINFTLS 1167 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLS 112 ++ ++ + VD+ + E V + + + + + Sbjct: 1168 ATERLKRLIQDLLAYSRTRQPVDAFTHVDTAEVVRDVIADLGDLRDRTGGVVDAQALPSV 1227 Query: 113 RERAKILLNLFMVAH------ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L ++F R V + F ++ NG + Sbjct: 1228 HGSPELLRHVFQNLIGNALKFHHPDRAPHVRVRAVRVPGAWQFDVQDNGVGIEPAY-HAR 1286 Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + I V + + +++ D S L Sbjct: 1287 IFGIFQRLHAVGEREGNGIGLAIVKSIVERHGGQVMVHSTPDQGSTFSFTLP 1338 >gi|304405489|ref|ZP_07387148.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304345528|gb|EFM11363.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 505 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 62/234 (26%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55 + + + + + + H++ +P+ +IH LE+L + + + Sbjct: 268 LETSFEAEREAKEHMRRFIADASHELRTPLTSIHGFLEVLLRGAADKREQLYPALNSMHG 327 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGE 107 S ++ + + + + + + ++ Sbjct: 328 ESTRMKKLVEDLLMLAKMDRAPQLRMSPILLDELMEEMDPHLRMLAGERTVQFELQQAVS 387 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA---RFPE 162 + + +++LNLF A + + I S+ NG P Sbjct: 388 ANGDADQIKQVVLNLFHNAVQHTDAHSGIIQVTVSDRPAGQPIVSITDNGPGIAAEHVPH 447 Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + + + + + L Sbjct: 448 VFERFYRSDSSRTRKHGGAGLGLSISQSIVKAHGGEITVDSVIGRGSTFAFKLP 501 >gi|256752369|ref|ZP_05493230.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|307725254|ref|YP_003905005.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|256748780|gb|EEU61823.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|307582315|gb|ADN55714.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] Length = 461 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64 L + S I H++ +P+ + + +E + + E +L L+ + Sbjct: 242 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 301 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++L + + + + + + + A++ + Sbjct: 302 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 362 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 421 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + + Sbjct: 422 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFIVKIP 460 >gi|255322379|ref|ZP_05363525.1| sensor histidine kinase [Campylobacter showae RM3277] gi|255300752|gb|EET80023.1| sensor histidine kinase [Campylobacter showae RM3277] Length = 353 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 62/232 (26%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLI 53 +A NI ++++ + + S + H++ +P+ I E+ + +E + LI Sbjct: 119 LAANINLTAAALEKMDYMQKDFISSVSHELKTPLSVISGYCEIAQDETDETRRNEYLGLI 178 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108 + + S + M L + A + Sbjct: 179 KEQANSLSRLCEDMLLLSRLDSQAGVNLDENVRVDEQLRKAAAMLMQKYDGREFDLDLPA 238 Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162 + A+I +NL A V+ + + G + Sbjct: 239 VSVRSNASMLAQIWINLMDNALKYSAADVGVSCCEEGDGLVVR--ISDEGAGIEAKKLEK 296 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + H + E +S ++ Sbjct: 297 IYDKFYQCEESHKGKGSGLGLSIVRRIVHLLGGEISYESEPGRGTSVSVMIP 348 >gi|229018840|ref|ZP_04175687.1| hypothetical protein bcere0030_33570 [Bacillus cereus AH1273] gi|228742461|gb|EEL92614.1| hypothetical protein bcere0030_33570 [Bacillus cereus AH1273] Length = 510 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 334 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ + + + D+ Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHTCNVQALIEEVVTFILPTAVMHSVHIIMDHFDYISDI 394 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167 + ++ L + ++ + + + G E+ ++ Sbjct: 395 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 500 >gi|229075533|ref|ZP_04208520.1| hypothetical protein bcere0024_33430 [Bacillus cereus Rock4-18] gi|228707512|gb|EEL59698.1| hypothetical protein bcere0024_33430 [Bacillus cereus Rock4-18] Length = 516 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ I + + K D+ Sbjct: 341 ISQMESITSQFMAMSKPQVLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDI 400 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167 + ++ + ++ N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 562 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 65/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57 M + + +L + S H+ P+ A+++S ELL++ + ++ Sbjct: 264 MLQALEREKELTELKSRFISMTSHEFRVPLTAVYSSTELLEQYSHNWAEEKKLKHFNRIK 323 Query: 58 MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S + ++ D+ + IE I + +G Sbjct: 324 DSVNRMTTLLDDVLIVNKAESGKLEFNPQPLNLNQLCQDLVEDIELGIGKQHEISWINSG 383 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + L A P G V + + E IF +K G PE Sbjct: 384 RASKACMDEKLLRHILTNLLTNAVKYSPLGSTVQFNCHCREQEVIFEIKDQGIGI-PPED 442 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + I + V + +L L Sbjct: 443 QKRLFESFHRAKNVGNIQGTGLGLSIVKKSVDLHGGKLAVHSEVGVGTTFKVTLP 497 >gi|167039422|ref|YP_001662407.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|166853662|gb|ABY92071.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] Length = 451 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64 L + S I H++ +P+ + + +E + + E +L L+ + Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 291 Query: 65 ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 ++L + + + + + + + A++ + Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 411 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + + Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFIVKIP 450 >gi|149919887|ref|ZP_01908363.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149819334|gb|EDM78767.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 657 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53 + L + + A+ L S I HD + + I L I+++ +L+ Sbjct: 284 RRLQTELLQTHKMQAVGRLASGIAHDFNNLLTVILGGASFLGMGAIDEDQRELVADIEDA 343 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + ++ L F R V+ + +++ + + V E + Sbjct: 344 AQHAAALTGQLLAFTRREVVQRRRVEVAGAIEQCQRLFARLLDHGIELHVEVAPELPAIR 403 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164 + ++++ + A ++P GG++ + + E S++ +G + + Sbjct: 404 FDESQLIQIVMNLVLNARDAMPSGGRIELRAVTGSGPSGEPELHLSVRDDGEGM-DADTY 462 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + RL E V + + Sbjct: 463 ARIFEPFFTTKRTGTGLGLATIKDIVVAAGGRLSVESALGQGSVFTCCIP 512 >gi|148654963|ref|YP_001275168.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148567073|gb|ABQ89218.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 358 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+ + + + L + H++ +P+ + LE L + + E + ++ Sbjct: 122 MAETLA-QVERQRI--TLIGNVAHELRTPLAGLEGYLEGLLDGVLPGDPETIHAMQHEVR 178 Query: 59 SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + ++ D + + I + + EK Sbjct: 179 RLRKLVDDLQHLSRVEAGQVAIQPQRFDVVALVHRIVAHLRPQLIEQCLQIAIEAPEKEA 238 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 A++L+NL A P G +TI V+ ++ G P Sbjct: 239 LAYADPDRTAQVLINLIGNAIRYTPEDGCITIRVRCDPTHVQVIVEDTGIGIPAEALPYL 298 Query: 164 FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215 F + + I LA + V + +L + Sbjct: 299 FERFYRVDPSRSRASGGSGIGLTIARHLARAMGGEITAASPGIGKGSVFTLILPR 353 >gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19] Length = 757 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 20/230 (8%), Positives = 69/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + ++ + + + + H++ +P+ +I LL E ++ S Sbjct: 378 LEDAMVDANAAAEAKSQFLATMSHELRTPLTSIIGFSALLREVVESEEPRRYSQRIWTAS 437 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEK 108 + + + G ++ + ++++ A + V + Sbjct: 438 QGLLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDM 497 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ L +A ++ G +++ + ++ G PE + Sbjct: 498 PLMLLDEVRMRQILINLAGNAVKFTGDGGVTIALHWRGDRLQVTVTDTGPGI-SPEGHKR 556 Query: 167 IVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + T + + L R+ E + + + Sbjct: 557 LFKRFSQVDHTTNGTGLGLMICKQLVELMGGRIGVESSPGNGSMFWFDIP 606 >gi|319442463|ref|ZP_07991619.1| two-component system sensor kinase [Corynebacterium variabile DSM 44702] Length = 511 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 57/214 (26%), Gaps = 22/214 (10%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAFGYTGS 76 H++ +P+ ++ +L +D M + R+SS L +R+ G Sbjct: 284 SHELRTPLTSVRGYADLYKSGATQDADMVIDRISSEAGRMSLLVEDLLTLVRMDEGRPMR 343 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHAS- 129 + + L +E+ A VS + + + +++ NL A Sbjct: 344 REPVDLLDLGIAAVENAKAGFPGRSVSLSNQTRSIPVTIGDSDRLHQVIGNLMTNALRHG 403 Query: 130 ----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHD 180 + +G + F + +V + Sbjct: 404 GADASVTLRLTQSDPGVQPATVGVDVIDDGAGIPAEDVPHLFERFYRADVSRSRASGGSG 463 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + E L Sbjct: 464 LGLSIVKSLVEAHGGTITVESELGEGTTFHVRLP 497 >gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium praevalens DSM 2228] Length = 593 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 76/218 (34%), Gaps = 22/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69 + + H++ +P+ +I L+ L ++ + +Q+I+ + + + Sbjct: 374 FVANVSHELRTPLTSIIGYLDTLLESDIEDQDTRERFLQIIKEETDRLSNLINDLLNLSK 433 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERAKILLNL 122 +++ +++V+ K+ ++ + + ++L+NL Sbjct: 434 IESQIFKLEADNFEKIVKKVVNLLSQKAKKQKLELNLEIDNNLPLVYMVREQIKQVLINL 493 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176 A GGKV + V+ K++ FS++ NG + +I + + Sbjct: 494 IDNAIKYTAEGGKVEVKVKQEKDKIYFSVQDNGMGIPQAD-QERIFERFYRVDKARSRAL 552 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + ++ + + + L+ Sbjct: 553 GGTGIGLSIVRNIIKQHGSEIQLKSREGVGSEFYFYLK 590 >gi|303238186|ref|ZP_07324722.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302594232|gb|EFL63944.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 393 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + + + + + I HD+ +P+ +I +E +LD+ I E + S Sbjct: 150 LKEGEKVKSEYEENRKTIIANISHDLKTPMTSIQGYIEAILDDTVISREDLSKYLKIIYS 209 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------------DKRVQV 102 + + +D + +V ++ Sbjct: 210 NSEYMNKLIDDLFLFSKLDMQKLDFNFAEVEAIPFFNDLFEEFELEFQERGFKFAYTNKL 269 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFP 161 ++ +I N+ A + + ++ +G Sbjct: 270 EENVVFNIDTKRIHQIFRNVIGNAVKYRGGASLSLWVDLYMEKDFVCVDVRDDGRGIGED 329 Query: 162 ---EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + E T D S + L + ++ ++ + + Sbjct: 330 KLEHVFDRFYRVDTERTKDLLSTGLGLAIAKELVEAHGGKISASSVEGSGTCFTIRIP 387 >gi|283853026|ref|ZP_06370283.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283571563|gb|EFC19566.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 477 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 31/244 (12%) Query: 1 MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-------------- 43 M + + + +L + + H+I +P+ A++ E + Sbjct: 227 MEQEYQAKYYQAEKMATIGMLAAGVAHEINNPLTAVYGLAEGIRRRLPAIRAAVDEPLFA 286 Query: 44 ---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + ++ R L F R V + D ++ + + Sbjct: 287 DVAEYTETILMECRRCRDIVRSMLSFSRPHTLAFSPVCLNEVVTDTLNILRGHLDERGQQ 346 Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLK 152 + T D + ++LLN+ A ++P + ++ N S++ Sbjct: 347 GLRLTVNLFDSLPTVPGDEAQLKQVLLNILANAMDAIPGEGEITVTTHPENDNTVNLSVE 406 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G PE ++ + + I + E+ + + Sbjct: 407 DTGCGI-PPENMDKLFNPFFTTKPVGKGIGIGLAACYSIVREHHGVIEVASEVGLGTHFT 465 Query: 211 ALLE 214 L Sbjct: 466 VKLP 469 >gi|229061002|ref|ZP_04198356.1| hypothetical protein bcere0026_30960 [Bacillus cereus AH603] gi|228718371|gb|EEL70005.1| hypothetical protein bcere0026_30960 [Bacillus cereus AH603] Length = 429 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + + + + H++ SP+ +I +L + + + Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105 I + + L + V + + Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ N+ + G + +S++ + G + Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDTGVINVSIKQDIKNVTILISDTGIGIHLDD 366 Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + + L Sbjct: 367 QKRIFERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423 >gi|116620474|ref|YP_822630.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223636|gb|ABJ82345.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 940 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 20/241 (8%), Positives = 66/241 (27%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 A+ ++ + +L I HD + +G+I + EL+ + + Sbjct: 556 AQVEALARQKLEGLGVLAGGIAHDFNNLLGSILATSELVLSELPDGTPASEGIISIKNVA 615 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ + + ++D + + ++ Q++ I+ + V + Sbjct: 616 DRAAEIVRQMMAYSGQENTIFEALDLSVLVREMLQLLSVSISKRAHLVVDLPENLPAIRA 675 Query: 114 ERAKILLNLFMVAHASLP--------------------RGGKVTISVQDSKNENIFSLKI 153 A++ + + + + ++ Sbjct: 676 NPAQLRQVVMNLITNASEALGESSGVITVGLAHVRPAAPRPAGHPAEITETGHVRLTVAD 735 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +G+ E +I D + + V + ++ + + +L Sbjct: 736 SGSGM-TEEIRARIFDPFFTTKFAGRGLGLAAVRGIIRDHGGSISVFSVPGQGSRFEVVL 794 Query: 214 E 214 Sbjct: 795 P 795 >gi|169825762|ref|YP_001695920.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41] gi|168990250|gb|ACA37790.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41] Length = 466 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +PI I ++L + + + Q RL + +D Sbjct: 239 SSIAHELRTPITFIKGYTDILYKRDLSAQDRQKYLAIIREETNRLSRLIKDLFDLAKMDE 298 Query: 80 LIGLGDIEQVIEDFIA---------------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + + + + V +I++NL Sbjct: 299 NSFIIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFEVCCENGLTLWADEARLEQIIINLLN 358 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179 A +G T++V+ ++ G + F + + + Sbjct: 359 NALTYCGQGDTTTVNVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKSRSRALGGS 418 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + + + V + Sbjct: 419 GLGLAIVKELVQAHGGEVTVKSELNKGTVFELSFK 453 >gi|152976420|ref|YP_001375937.1| integral membrane sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025172|gb|ABS22942.1| integral membrane sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 424 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 62/224 (27%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LLD + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLDSTEDVKNKEYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S I Sbjct: 256 RAEQIISDYLNLARPQIEQKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISENLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ + ++ + I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQENKGYLKVTAIQKGDTIIVRVKDSGIGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L L Sbjct: 375 YYSLKEKGTGLGLMVTYRILQAHNGTLEYSSESGKGTEAIITLP 418 >gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] Length = 1337 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 21 RICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + H+I +P+ I E L +Q I +S + + + S Sbjct: 820 NVSHEIRTPLTVIIGLAESLLHTQRFTADIYNKLQGIYRNSNLLRDLISELLDFKKHEQS 879 Query: 77 VDSLIG-----------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L + ++ + + V V E R+ K++ NL Sbjct: 880 LAHLCVEAVDWSAFVGSICNMFKEYANSNDVTLNVNEGTDAEVWIDKRQMRKVVNNLISN 939 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHD 180 A P+GG V ++ + + I + G + + Sbjct: 940 ALKHTPQGGNVNVTTECDGRQVILRVTDTGKGIAETDLAHVFDCFYQARDFESLTEMGTG 999 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + ++ + + + + L Sbjct: 1000 IGLNLTQNIVQQHHGTISVDSVINEGTTFVVTLP 1033 >gi|283851971|ref|ZP_06369247.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp. FW1012B] gi|283572695|gb|EFC20679.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp. FW1012B] Length = 896 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVG---------------I 45 AK L A L S + HD +P+ AI S E LL Sbjct: 653 AKATLVEAEREKLRAALLSTVTHDFKTPLAAIAGSAESLLALGEATTATVRRSLEENIVA 712 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E ++ + + + ++ ++G + Sbjct: 713 EASRLERLVDNLLRIAALESGSVAPDIKPIPIEEVVGSALTRLEGLLVGHEVRLDIPDDL 772 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++L+NL A P G ++ + + + ++ G + Sbjct: 773 PPIPMDEVLMEQVLINLLENAAKHTPPGTEIRVGAAVRGRQALVTVSDTGPGLPPGDPEK 832 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 F + G+ S + + + + + + + L Sbjct: 833 LFERFQRGDRASAA-GYGLGLAICRAVVKAHGGTITADQTGGQTGAAFTITLP 884 >gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1088 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 66/244 (27%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A + + + + + + H+I +P+ AI +LELL ++ E + Sbjct: 468 LAHELRNAKQAAESANAAKSAFVAAMSHEIRTPLNAILGNLELLSLATLDAEQRNRLSTI 527 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------------- 101 S+ L + ++ + I+ + + Sbjct: 528 RTSSDGLLAIISDILDFSKIEAGEMAFERIDFDCVELTGRALAMFAPGARAKGLRLYGQF 587 Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGN 156 V +I+ NL A G + + + S++ G Sbjct: 588 DVDSALSMNSDPVRIGQIINNLLSNAVKFTSAGHVTLRLATEYAEDGATLLLMSVEDTGI 647 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 PE+ ++ + + LLA + E + + Sbjct: 648 GM-TPEQQERLFSAFSQGDASIHRRFGGTGLGLALCKLLAQALGGSIHAESTPNVGSRFT 706 Query: 211 ALLE 214 L Sbjct: 707 VRLP 710 >gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3 str. Loch Maree] gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 569 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67 ++ + + H++ +P+ +I E L D+ ++ +Q+I + + + Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117 + +D + + + + + R+ + I + + Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 463 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 +++NL A G V+I + K +F ++ G + +I + Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLY-RIFERFYRVDKA 522 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ + + Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKRGTKFIVKIP 565 >gi|327482286|gb|AEA85596.1| two-component sensor PilS [Pseudomonas stutzeri DSM 4166] Length = 530 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 67/228 (29%), Gaps = 19/228 (8%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMS 59 I + L +L L + I H+I +P+GAI ++ +LL E ++ +L ++ Sbjct: 296 SQIAQKAQQLKLASLGRLTASIAHEIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDH 355 Query: 60 AIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + R +D L ++ + V + G + Sbjct: 356 SRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQQTVHLETIGSSLQTR 415 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164 + ++ L + ++ + + + +G + Sbjct: 416 MDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLH 475 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + Y L N+ RL + + Sbjct: 476 N-VFEPFFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIV 522 >gi|307634828|gb|ADI84131.2| sensor histidine kinase response regulator [Geobacter sulfurreducens KN400] Length = 740 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 32/245 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 + + L + + A+ L I HD + + I +L + D+++ Sbjct: 355 RREMLQRLGQAHKMEAVGRLAGGIAHDYNNKLTVILGYAHVLKLTGFQSKEAPEQLDQII 414 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107 + S L F R VD + + + I D + Sbjct: 415 RAAEHSRDITRQLLAFTRSERVNPVRVDLNRLISQSSKSLTRLIGEDITLSHVAGADLWP 474 Query: 108 KIDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLK 152 + ++L+NL M A + L R + + ++ Sbjct: 475 VRIDPTQADQLLMNLVMNARDAIAGTGSVTIATSNVVLDRATVRHLQGASPGEYVLMTVS 534 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G PE I + + + V + +N + E V S Sbjct: 535 DTGCGM-DPEVMEHIFEPFYTTKEMGKGTGLGLATVYGIVRQNGGAISVESEPGGGSVFS 593 Query: 211 ALLEK 215 L + Sbjct: 594 IYLPR 598 >gi|262171514|ref|ZP_06039192.1| signal transduction histidine kinase [Vibrio mimicus MB-451] gi|261892590|gb|EEY38576.1| signal transduction histidine kinase [Vibrio mimicus MB-451] Length = 573 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 65/246 (26%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + + + + L L + + H++ +P+ A+ +++L +V Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRSDSTSYQV 244 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + + E S +IL N+ A + G+V I + ++ ++ Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKQ-GRVDIQLNYIEDGIDIQVQDT 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + + D + Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTINVDSKIDIGTL 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLRIP 428 >gi|229166399|ref|ZP_04294156.1| hypothetical protein bcere0007_13720 [Bacillus cereus AH621] gi|228617141|gb|EEK74209.1| hypothetical protein bcere0007_13720 [Bacillus cereus AH621] Length = 421 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L + ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQDNVSPSNKELFKSLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KI 109 + + L + Q + + + + Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYDFSAELDGVLVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + I+ N + K NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEEPLSIQITSYRLDNFVRITFKDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKVTSNQN-GTTFTISIP 409 >gi|218902667|ref|YP_002450501.1| sensor histidine kinase [Bacillus cereus AH820] gi|218540214|gb|ACK92612.1| sensor histidine kinase [Bacillus cereus AH820] Length = 420 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFXSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|307152518|ref|YP_003887902.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982746|gb|ADN14627.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1107 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 59/232 (25%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 A+ S+ DL + HD+ P+G I + +LL ++ + + Sbjct: 869 AQKEELARSNQDLE-QFAYIVSHDLQEPLGIIASYGQLLKRHCQGQLDAKAEKYINQMLT 927 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------- 108 S ++ + + + + + ++ ++ + Sbjct: 928 SVNRMRQQIDDLLAYSRVGTRTKTFQLVDLNWCLRQAIDNLEILIKKNGATININSSLPT 987 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFP---EK 163 + + ++ NL A V + ++ NG Sbjct: 988 LMADGSQLIQLWQNLISNAIKYHGELPPVIDIACQQRGNVWLFSIRDNGIGIEPQYSERI 1047 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + I + + ++ + + K Sbjct: 1048 FQIFQRLHTQEEYSGTGIGLAICQRIIQRHGGKIWVQSQLGKGATFYFTIPK 1099 >gi|197122933|ref|YP_002134884.1| histidine kinase [Anaeromyxobacter sp. K] gi|196172782|gb|ACG73755.1| histidine kinase [Anaeromyxobacter sp. K] Length = 379 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 62/219 (28%), Gaps = 10/219 (4%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60 + + L I HD+ +P+G I SL +L + + + I A Sbjct: 161 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRGRVGDDERARKHVDRIGEQLGVA 220 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRER 115 + + + LG + + V V + Sbjct: 221 NGIITNLLDMIRNRPLAREPVDLGQVIAAAAGAVKHAPGVSVAVEGVEGLPAVDGDPGQL 280 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +NL A + G VT+ Q + +++ G + ++ + + + Sbjct: 281 RQVFVNLLENAAFAAAPAGAVTVRAQHTDGAVEVAVEDTGPGVDPATRR-RLFEPLITTK 339 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 340 EKGIGLGLALVKRIAERHGGSVEYSDRPGGGARFTVRLP 378 >gi|157146700|ref|YP_001454019.1| sensor protein KdpD [Citrobacter koseri ATCC BAA-895] gi|157083905|gb|ABV13583.1| hypothetical protein CKO_02466 [Citrobacter koseri ATCC BAA-895] Length = 895 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 56/216 (25%), Gaps = 18/216 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 ALL + + HD+ +P+ + E+L E IR ++ + + Sbjct: 667 ALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHILNTTRLVNNLLDM 725 Query: 71 F------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121 + + + + +S + + ++L+N Sbjct: 726 ARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSHPINLSLPAPMTLVHVDGPLFERVLIN 785 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178 L A ++ I + NG + F + GN ES + Sbjct: 786 LLENAVKYAGSQAEIGIDAHVEDEHLQLDVWDNGPGIPDGQEKSIFDKFARGNKESAVPG 845 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 846 VGLGLAICQAIVEVHGGTISAHNRPQGGACFRVTLP 881 >gi|119899781|ref|YP_934994.1| putative sensor histidine kinase [Azoarcus sp. BH72] gi|119672194|emb|CAL96108.1| putative sensor histidine kinase [Azoarcus sp. BH72] Length = 711 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLS 56 + + + L A+ L + + H+I +P I +LELL E E V+ IRL Sbjct: 455 LRTAQRQLVMTEKLAAIGELTAGVAHEISNPTAVIQGNLELLREELGEHATPVLNEIRLI 514 Query: 57 SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 K + + VD L D + ++ G Sbjct: 515 DEQVNRIRKIVTKLLQFARPGEFAGYAAAVDVNTVLADCLVLTRQHLSRQGVTVRHEPGT 574 Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---------NIFSLKING 155 +E ++L+NL + A ++P GG +T++ D +++ G Sbjct: 575 LRLVEINEQELQQVLINLIVNAVQAMPAGGTLTLTTADWDERGPGGIVARGVCVTVRDTG 634 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 R + + L R+ E + + L Sbjct: 635 QGIRDEDLARIFDPFFTTKKTQGTGLGLSISYSLVERYGGRITVESVPGAGAAFTVWL 692 >gi|30019607|ref|NP_831238.1| sporulation kinase [Bacillus cereus ATCC 14579] gi|229126872|ref|ZP_04255884.1| hypothetical protein bcere0015_13290 [Bacillus cereus BDRD-Cer4] gi|229144156|ref|ZP_04272571.1| hypothetical protein bcere0012_13200 [Bacillus cereus BDRD-ST24] gi|296502128|ref|YP_003663828.1| sporulation kinase [Bacillus thuringiensis BMB171] gi|29895151|gb|AAP08439.1| Sporulation kinase [Bacillus cereus ATCC 14579] gi|228639375|gb|EEK95790.1| hypothetical protein bcere0012_13200 [Bacillus cereus BDRD-ST24] gi|228656812|gb|EEL12638.1| hypothetical protein bcere0015_13290 [Bacillus cereus BDRD-Cer4] gi|296323180|gb|ADH06108.1| sporulation kinase [Bacillus thuringiensis BMB171] Length = 423 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSLSKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQDYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|148266201|ref|YP_001232907.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399701|gb|ABQ28334.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 476 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 61/218 (27%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L S I H+I +P+ I ++ ELL + ++ I + + + +M L Sbjct: 253 GQLASGIAHEIRNPLNYISLAIDHLKSELLPSCPERGKELESIADNIKEEVRKANYMVLN 312 Query: 71 FGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 F V + +++D + V + + +++ N Sbjct: 313 FMNYGRPLKLRLHEVRYPELISKAMPLLQDKLNEQHIEVVEDIPADLPPMQVDPELMRNC 372 Query: 123 FMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLARFPEKFTQIVDGNVESTI 176 + + + + G+ + +I + Sbjct: 373 LFNFITNAAQAMPDGGKITLGAAFVAGDNLFRLTFADQGSGIAPNDI-DKIFQPYFTTKE 431 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ ++ E + + +L Sbjct: 432 AGIGLGLAITERIIKEHGGEMVVESQLGNGTTFTIILP 469 >gi|256788241|ref|ZP_05526672.1| two component sensor kinase [Streptomyces lividans TK24] Length = 503 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 13/204 (6%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 H++ +PI + LEL+ D+ +E ++L+ ++ + R F Sbjct: 296 HELRTPITIVRGHLELMGDDPAEREETVRLVTDELDRMSRIVEDLLLLAKAERPDFVTPE 355 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 V D+ + + E + + ++ L A G + Sbjct: 356 PVQLAELTADVFVKARTLGEREWVLDGVADREAHLDPQRITQAMVQLAQNAVQHTTAGQR 415 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190 V I + + + +G + + F + G + + V +A Sbjct: 416 VRIGSRADGSRIELYVADSGPGVQPQDAEVIFERFRRGTARRGVRGTGAGLGLSIVRAIA 475 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + R+ LE Sbjct: 476 EGHGGRVDLRTTAGGGATFVLTLE 499 >gi|253996821|ref|YP_003048885.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis JLW8] gi|253983500|gb|ACT48358.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis JLW8] Length = 914 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 77/230 (33%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLS 56 A+ ++ S L + S I HD+ +P+ I + L + ++ L S Sbjct: 671 AQEALISMESERLRNSVLSAISHDLNTPLTTIIAAAGWLKQETEINDKRYEYVSMLNEQS 730 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEKID 110 + + + +A +G V +E+V + + + + Sbjct: 731 IRMKNLVVNLLDMARLQSGKVKLNKQWQLLEEVVGTSLRTMSEVVSKHTIVIDMPHDLPL 790 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164 + + ++L NL A P G ++ IS + +N+ S+ G+ + F Sbjct: 791 IEFDAVLIDRVLCNLLDNASKYSPAGNRIFISARTQQNDVWISVADEGSGLPENLENQLF 850 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G ES+ + + + ++ H + + L Sbjct: 851 EKFTRGEKESSKAGVGLGLSICKAIIEAHDGKIWANNKPPHGAIFTFSLP 900 >gi|222151605|ref|YP_002560761.1| hypothetical protein MCCL_1358 [Macrococcus caseolyticus JCSC5402] gi|222120730|dbj|BAH18065.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 570 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +PI +I E L ++ + + +I S + + + Sbjct: 350 FVANVSHELKTPITSIKGFTETLLDGAKEDKDTLEMFLDIILKESNRIQVLVSELLELSK 409 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLNL 122 + V+ + + +V+ + +++ + + ++++NL Sbjct: 410 IEQANHFNMVKVNLPQKVFNSVEVVYPLAEKKNINFNLELEKNLFVLAEPSKLKQVMINL 469 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTID 177 A P +VT+ +E I + G E F + + Sbjct: 470 LSNAINYSPEDAEVTVKAYLKADECIVEIIDQGIGIAPEETTRIFERFYRVDKARSRDSG 529 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E L+ Sbjct: 530 GTGLGLAIVKHIIEVFNGEIDVESELGKGSTFRIKLK 566 >gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 975 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 72/238 (30%), Gaps = 28/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------------GIE 46 A++ + A + I H++ +P+ AI EL+ + Sbjct: 719 ARDAAERGNRAK--ATFLANISHELRTPLNAIIGFSELMKHEIFGPLQPPAYRSYVDDVH 776 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQV 102 + M L+ L + + + VD + ++++ + + + Sbjct: 777 ESGMHLLELINDILDMSKAEAGMTDLVESPVDVAAVVRASLRMMDKRASANGISLEADLP 836 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 R +ILLNL A GG V ++ Q + + G PE Sbjct: 837 DGLAFLRADERRIRQILLNLLSNAVKFTDDGGMVRVTAQVDGRGMVIEVIDTGIGM-TPE 895 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++++ V + + L + + + I DH ++ Sbjct: 896 DMDKVMEPFVQADTRLSRKYEGTGLGLPLTKALVNAHGGTMELHSIPDHGTTVTVTFP 953 >gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 989 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 55/241 (22%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQL 52 K + + A + I H++ +P+ I ++L + ++ + Sbjct: 519 RKALEDTVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGYAQMLQRDARLDARQLAS 578 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGS----------------VDSLIGLGDIEQVIEDFIAV 96 + + S L + + I + + + + Sbjct: 579 VGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVL 638 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + R ++LLNL A RG + + F ++ G Sbjct: 639 NYVAAPDLPAVVRVDERRLRQVLLNLLANAVKFTDRGEVTLSVSRGAAGRVRFEVRDTGI 698 Query: 157 LARFPEKFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ + L + V Sbjct: 699 GVSADRLEAIFQPFEQAGDHTRRSGGAGLGLAISRQLVRMMGGEIEVTSSAGEGSVFGFE 758 Query: 213 L 213 L Sbjct: 759 L 759 >gi|27363514|ref|NP_759042.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27359630|gb|AAO08569.1| Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio vulnificus CMCP6] Length = 595 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L + + I H++ +P+ AI + + L E V + + Sbjct: 357 LRLTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSR 416 Query: 56 SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S K + + + L E + + +++ + Sbjct: 417 ISALTERMAKISQQLRSFARKSAGDELVEARLMPVLLSANELMKPSLKSARVQLETDFPE 476 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160 I L ++ L A ++ + + + + + +G Sbjct: 477 HDIHLVINTIQLEQVLINLITNAIEAMENTEAKQLRITVDRTLEQQIRVHIDDSGPGI-D 535 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P KF Q+ + + + + + +L + +L Sbjct: 536 PAKFAQLCEPFHTTKKNGLGLGLSISQQILAGMNGKLQVSHSPLGGARFTIMLP 589 >gi|313891233|ref|ZP_07824852.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120596|gb|EFR43716.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 328 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 73/236 (30%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 + + S +++ +++ HDI +P+ +I ++E + + E + + I Sbjct: 92 LEASFESLNESEREKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPKEEEKDYLNTISRQ 151 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI------------GLGDIEQVIEDFIAVDKRVQVSW 104 + ++ + + + + Q+ + ++V+ Sbjct: 152 TNRLNQLVEELHVVSLNDQRQEVKQTSQVIYIEKLLIEILSEFQLTLERENRTVNIEVAP 211 Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 KI E ++I+LNL A +TI + G + + Sbjct: 212 EVVKIKSQYEALSRIMLNLVSNAIKYSEVDTALTIKAYRQDQMVRIDVIDQGQGIKEADL 271 Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ + H + Y LAH+ + E S L Sbjct: 272 PLIFKRLYRVEMSRNMKTGGHGLGLYIAKQLAHQLGGDISVESQFGKGSSFSVFLP 327 >gi|301062848|ref|ZP_07203441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300443048|gb|EFK07220.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 444 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 62/213 (29%), Gaps = 18/213 (8%) Query: 21 RICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG---- 75 + HD+ +P+ + E L + + + + + L + Sbjct: 227 NVAHDLRTPMTRLRGVAEFALQDATNREACREALGDCMEESERVLTMLNTLMDVAEAETG 286 Query: 76 ----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + + D+ +++ + + + + T ++L NL Sbjct: 287 VMRLQKTALSLSHVIEDVVDLYEIVAEEQNTNVHLNLDKTIMIQADRTRLQQVLANLLDN 346 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQ 182 A +GG V++ E + S+ G E + ++ G+ + + Sbjct: 347 ALKYGGKGGTVSVESMAEGAEAVISVSDKGMGIAENEISRIWERLYRGDYSRSRRGLGLG 406 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + + + L + Sbjct: 407 LSFVKAIVEAHGGSVQVKSRLREGSTFIVKLPR 439 >gi|256829610|ref|YP_003158338.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578786|gb|ACU89922.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 793 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------ 48 MA+ I L ++ + + + I H+I +P+ IH L +DE+ E Sbjct: 556 MARQI-MLLDKINSLGRMAAGIAHEIRNPLTGIHGYLYAMDEICDELPAEPASVLRTTIA 614 Query: 49 -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + L F + +D + + + ++ + + Sbjct: 615 KIRKAAGKMESVIRRVLDFSKPGTPQLELLDLAVPVQEGLSLMLPTLRKAGITVDTEFSP 674 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFP 161 + +R ++ + + + + + + ++ + NG Sbjct: 675 VPAILGDRMQLEQAVINIVDNAARAVRNNAGAKNIALRIVCEEDRLSLRIADNGPGITPA 734 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ +I D + D I V + ++ + + Sbjct: 735 DR-ERIFDPFYTTASDGTGIGLSIVQRIVADHSGTIHVGESPAGGAEFRLEFPR 787 >gi|223938073|ref|ZP_03629971.1| cyclic nucleotide-binding protein [bacterium Ellin514] gi|223893287|gb|EEF59750.1| cyclic nucleotide-binding protein [bacterium Ellin514] Length = 444 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 70/230 (30%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS 57 + + L L I HD+ +P+ I S E+ +++ E + R+S Sbjct: 203 RQYVSEVLQRERLALVGRFARTIVHDLKNPLNIIGLSAEMAGMEKATPEGRHLAKQRISK 262 Query: 58 M--SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SWT 105 + + + L V + +++ Sbjct: 263 QVERISELVNEILEFTQGSHVSFVLAQTPYDVFVQILLEEIRPEIEIKSVTIELENAPPA 322 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ NL A ++P GG++T+ + S+ E I ++ G E Sbjct: 323 IRLLLNPKRLRRVFYNLIHNATDAMPDGGRITLRFRVSEEEVITEIEDTGPGI-ATEIAD 381 Query: 166 QIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + +++ R+ V S L Sbjct: 382 RLFDAFATFGKAHGTGLGLSISKKIVEDHRGRISARNEPGRGAVFSFALP 431 >gi|254509234|ref|ZP_05121329.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus 16] gi|219547825|gb|EED24855.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus 16] Length = 573 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 61/234 (26%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ + + + + H++ +P+ A+ +++L D ++++ SA Sbjct: 198 KSAQVRAEQANQAKSRFLAMMSHELRTPLSAVLGYVDVLLADSKCDHQIEILEKMESSAE 257 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + ++ + + + + ++ + + Sbjct: 258 LLLVLINDILELSRIESGEFRIKCQWVNLKNELEFMLEHFYALSDAKGLKLNVNLDIDAH 317 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +I+ NL A G V++ + + E I ++ G T Sbjct: 318 HSVWVDPARILQIVFNLLGNAIKFT-HAGHVSLHAEVTSQELIIEVEDTGIGIDPSRIET 376 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L + E L Sbjct: 377 VFNQFKQADDSITRRYGGSGLGLTISKHLVTLMNGSIRVESEKGKGSRFKIKLP 430 >gi|115377775|ref|ZP_01464965.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310817766|ref|YP_003950124.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365212|gb|EAU64257.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309390838|gb|ADO68297.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 781 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM-----------QLIRLSSMSAII 62 + + + H+I +P+ + ++L +LL + E + + I Sbjct: 421 MAAGVAHEINNPLAYVCSNLAFLGDLLARGPVPAESLPELREVVAETEEGIGRVRAIVQD 480 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKILL 120 F R G VD L +++ + + ++++ Sbjct: 481 LKAFARSDEERFGPVDVHQVLEGALRLVRNELAYRARLVRALEGVPTVRGNEGRLGQVMV 540 Query: 121 NLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 NL + A + + + D + + ++ NG E +I D + Sbjct: 541 NLLVNAVQAFSKNDMDENRIRLATRCDGPDWVVVEVEDNGPGM-AQEVLERIFDPFFTTK 599 Query: 176 IDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + H ++ H V +L Sbjct: 600 PVGVGTGLGLAICHSIVHSMGGQIEVRSRLGHGSVFRVVLP 640 >gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1131 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 20/232 (8%) Query: 2 AKN-ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 KN L S L ++ + + I H+I +P+ AI N+L L D E +++ Sbjct: 896 RKNAEDALLRSEKLASVGRMAATIAHEINNPLEAITNTLFLALHAQDLPESAREYLEMAD 955 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------EQVIEDFIAVDKRVQVSWTGEK 108 + + + + + + + V Q Sbjct: 956 GELRRVAHITRQALGFYRESNAPRQIALNAVMDSTLDLLKNRIRTKNVTVEKQWDGDVHA 1015 Query: 109 IDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ E ++ NL + ++ G KV IS + + ++ +G + + Sbjct: 1016 EAVAGEMRQVFSNLLQNSLDAVDEGGAIKVRISTIRNGSAVRVTIADSGKGIEANFR-ER 1074 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPE---IIDDHNVVLSALLE 214 I + + + + + ++ R+ D S +L Sbjct: 1075 IFEPFFTTKGAVGTGLGLWVTRQIVEKHGGRIRVHSLTSGDQRGTSFSIVLP 1126 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 69/237 (29%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + L+ +D S + H+ +P+ + LE L E I E L+ ++ Sbjct: 354 ERRRAEALAELDRAKTTFYSNVSHEFRTPLTLMLGPLEELLGKSERAIRPENHHLVEVAY 413 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------- 103 + LK + ++ + + + F A + S Sbjct: 414 RNGTRLLKLVNTLLDFSRIEAGRMNVSFQATDLVAFTAELTALFRSATDKAGLRLEIESD 473 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 KI+LNL A G +TI+++D + S++ G E Sbjct: 474 ALPHRVYVNREMWEKIVLNLLSNAFKFT-FEGGITIALRDGGDGVAVSVRDTGVGIPPNE 532 Query: 163 ---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G + + I V L + + E L Sbjct: 533 LPRVFERFHRVEGAKGRSFEGSGIGLSLVQELVKTHGGTIEVESEVGKGTTFHIHLP 589 >gi|28209857|ref|NP_780801.1| sensor histidine kinase [Clostridium tetani E88] gi|28202292|gb|AAO34738.1| sensor histidine kinase [Clostridium tetani E88] Length = 738 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L A+ + + I HD+ + + I S++LL E ++D+ + Sbjct: 367 QEQNKFIESEKLRAMGEMAAGIAHDVNNVLTPIVGSIQLLKESNMKDKHLIKQLDVIEMC 426 Query: 61 -----------------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-- 101 + D++ + ++ V Sbjct: 427 AYDGMNITNKIKRFTKQYNLNYGLETFNIDNIIKDAINLTKNKWLTESALNGININVMSK 486 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + E ++ +N+ A ++P G + I+ + N + + NG Sbjct: 487 LNSNAKVKGNETEIREVFINIIKNAIDAIPEEGYIEITSEVKNNNVVIEFRDNGIGMNRE 546 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + V L Sbjct: 547 VVKRAFEPFFSTKGKKGSGLGLSVSYKIIQDHGGTMKIDSKESFGTVFYIELP 599 >gi|331269704|ref|YP_004396196.1| putative phosphate regulon sensor protein [Clostridium botulinum BKT015925] gi|329126254|gb|AEB76199.1| putative phosphate regulon sensor protein [Clostridium botulinum BKT015925] Length = 455 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 19/232 (8%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59 ++ L + +++ + + + H++ +P+ +I E L + D + +I Sbjct: 223 DMADKLQNTLNIKSQFVANVSHELKTPLTSIKGFAETLRYVENNSTRDRFLGIIDDEVER 282 Query: 60 AIIRLKFMRLAFGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + + ++ + + + + V + Sbjct: 283 LTRLINDILILSDIECNKYLKKSEDIDVVACIKDIYNLMKNYSEKKNIHVNMVVYESPII 342 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++++N+ A G +V I V+ +N+ + ++ G E ++ Sbjct: 343 CGDKDKFKEMIINIVDNAIKYSENGDQVFIGVKTEENQCVIWVEDTGVGI-EKEHIPRLF 401 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + Sbjct: 402 ERFYRVDKARSRNNGGTGLGLAIVKHIVLNFNGKIYVRSKFNQGTKFTIKIP 453 >gi|320322225|gb|EFW78321.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. glycinea str. B076] Length = 436 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDLSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|229155124|ref|ZP_04283237.1| hypothetical protein bcere0010_13180 [Bacillus cereus ATCC 4342] gi|228628409|gb|EEK85123.1| hypothetical protein bcere0010_13180 [Bacillus cereus ATCC 4342] Length = 423 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGIPAA-IQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|238797762|ref|ZP_04641256.1| hypothetical protein ymoll0001_12720 [Yersinia mollaretii ATCC 43969] gi|238718403|gb|EEQ10225.1| hypothetical protein ymoll0001_12720 [Yersinia mollaretii ATCC 43969] Length = 908 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 650 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 709 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 710 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSHHQIRVELP 769 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + NG + Sbjct: 770 DEMVLINCDGSLLERVFINLLENAHKYAGHEALLGIRATVQGEWLNVEVWDNGPGVTLGQ 829 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E D L Sbjct: 830 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGARFHFTLP 884 >gi|254229817|ref|ZP_04923223.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25] gi|262395617|ref|YP_003287470.1| sensor protein TorS [Vibrio sp. Ex25] gi|151937653|gb|EDN56505.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25] gi|262339211|gb|ACY53005.1| sensor protein TorS [Vibrio sp. Ex25] Length = 987 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 L + D + D Q++ ++ + Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKRLLFSYHIESDVS 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A G + +++ +F + G ++ Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDQ 636 Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + + L + + H + Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGILEVDSEEGHGSRFWFSIP 691 >gi|116626468|ref|YP_828624.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229630|gb|ABJ88339.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 611 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 17/229 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLS 56 + I L + L A+ + S + H++ +P+ AI +E+ +V + + Sbjct: 381 QRKINRELQTADRLSAISRISSGVAHEVKNPLNAILLHVEVARGKLSHGNTDVAPQMEII 440 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEK 108 + + + +R +T V+ + + ++ A V V E Sbjct: 441 AREILRLDRVVRTFLDFTRPVELKLATVSMRELVQEIVELARPQAAAAGIGVTVRDEAEG 500 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +D+ + + +LN+ + ++P GG++ +N + G Sbjct: 501 VDVRVDRDLFKQAVLNIVVNGMQAMPEGGELRFEATAGENGTELRISDTGTGI-PEALRE 559 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + I + + + L Sbjct: 560 KIFRLYFSTKKEGSGIGLAMTFRIVQLHDGTIDFTSEPGKGTTFLIRLP 608 >gi|320353837|ref|YP_004195176.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122339|gb|ADW17885.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 947 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 60/245 (24%), Gaps = 33/245 (13%) Query: 2 AKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K + M+ + LL + HD + + I + + + + Sbjct: 560 RKESELKLRQMQKMEAIGLLAGGVAHDFNNILSVILGYATMALDELGSSSSRVKRDVLQI 619 Query: 59 SAIIR------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 F + + + + Sbjct: 620 QKAGLRARDLVKQILSFCHQSEEHFQPLKPHLIVKEVVKMLRSSFPSTIAITSRIAVLDA 679 Query: 107 EKIDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSL 151 + + ++L+NL A ++ + + + S S+ Sbjct: 680 LVLADPSQIHQVLMNLCTNALHAMKGSGELLIELEQTDLHQKRRRELQDLPSGPYLRLSV 739 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 K +G PE +I D + + + V+ + +K + + + Sbjct: 740 KDSGTGI-PPEIVDKIFDPFFTTKKEGEGTGLGLAVVLGIVKAHKGAVTVDSKPEQGTTF 798 Query: 210 SALLE 214 S L Sbjct: 799 SVYLP 803 >gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] Length = 675 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 63/234 (26%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL ++ + + + Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEATFRRGLEAIERSA 344 Query: 62 IRLKFMRLAFGYT---------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + D L + + + + ++ Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAVDMECQPVP 404 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG + +SV S + +++ G P Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASAEGLVATVRDTGIGIEPTFLPHI 464 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + L + R+ D ++ L Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGTDLGTTMAVTLP 518 >gi|271970058|ref|YP_003344254.1| heavy metal sensor signal transduction histidine kinase [Streptosporangium roseum DSM 43021] gi|270513233|gb|ACZ91511.1| heavy metal sensor signal transduction histidine kinase [Streptosporangium roseum DSM 43021] Length = 460 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 19/231 (8%), Positives = 61/231 (26%), Gaps = 19/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSA 60 ++ S + + + H++ +P+ +I E + D +M+ + ++ Sbjct: 224 ESEASARRSEERMRRFVADASHELRTPLTSIRGFAEFYRQAPDIDAAPLMRRVESEAVRM 283 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDL 111 + + + + + D+ + D + + + + Sbjct: 284 GLLVDDLLMLARMDQQRPVAMRPVDLLAIAADTVHDARILAPAREITLSVDGAALIVSGD 343 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168 +++ NL A P V +++ + + G + F + Sbjct: 344 EVRLRQVVGNLMTNALTHTPDRTPVRMTLSARDGMAVIEVADEGPGLDAEQCERVFERFY 403 Query: 169 DGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E L Sbjct: 404 RVDSARGRRAPEDGGSGLGLAIVAAIVDTHGGTVDVESAPGEGSTFRVALP 454 >gi|258404542|ref|YP_003197284.1| PAS/PAC sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796769|gb|ACV67706.1| PAS/PAC sensor signal transduction histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 671 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 20/243 (8%), Positives = 62/243 (25%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 M + + + + +L + + I H++ P+ AI + L V Sbjct: 416 MIEKDAQLIQAAKMKSLGEMSAGIAHELNQPLNAIKMGSDFLALTVERGTELPPERWQGV 475 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--- 106 + I A + +R ++ + + + + + ++ Sbjct: 476 VHEISAQVDRAAGIIATLRAFGRKETLSKDVLDINEPIKAVLSILRQQFQLHNVDFHLAL 535 Query: 107 -----EKIDLSRERAKILLNLFMVAHASLPRGGK--------VTISVQDSKNENIFSLKI 153 + ++ NLF A ++ + + + + ++ Sbjct: 536 GQNLPPVLAQDTRLQQVFFNLFTNAKEAIEELRRSSPQAEGTIHVRTWAADGRVCAAVCD 595 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + + V S + L + + + + + Sbjct: 596 TGPGIPDS-LRQTLFEPFVSSKSSGQGMGLGLAITQSLVRDYQGTITIDSTPGEGACFTV 654 Query: 212 LLE 214 Sbjct: 655 SFP 657 >gi|225165893|ref|ZP_03727663.1| PAS/PAC sensor hybrid histidine kinase [Opitutaceae bacterium TAV2] gi|224799865|gb|EEG18324.1| PAS/PAC sensor hybrid histidine kinase [Opitutaceae bacterium TAV2] Length = 422 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59 + M+ + L I HD+ + + + S++LL + + ++Q + S+ Sbjct: 45 QTRHLRARHMENLGELTIGIAHDLNNALAPVLMSIDLLRLRVDNASCERLLQAVETSARR 104 Query: 60 AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +K + A + + + + + Sbjct: 105 GADLVKQVLVYARGLEGAPVPLHAAQLIKDVALVASETFPAGIATTASIDPQLWPVMADP 164 Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS----------------VQDSKNENIFSLKINGN 156 + ++LLNL + A ++P GG +T + +++ G Sbjct: 165 TQLHQVLLNLAINARDAMPAGGSLTFTARNLPPLPAADAAGASGMPCGPVIEITVRDTGT 224 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQ--FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ D + + + + + + E + L Sbjct: 225 GI-APEVRERLFDPFFTTKPGGRGLGMGLATARTIVNAHGGVITFESEPGQGATFTIRLP 283 >gi|119485203|ref|ZP_01619588.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457431|gb|EAW38556.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 364 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 54/216 (25%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIRLKFMR------- 68 L S + H++ +P+ + LE + E I+ R + + ++ Sbjct: 148 LISDMTHELRTPLTVVRGYLEEMAEGQIQPSDELYNRLIRETRRLERLVNDLQELSKAEA 207 Query: 69 -LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLNLF 123 ++ L + D + V +IL+NL Sbjct: 208 GYLVINPKPLNLRPLLESLVTRFGDQLLEYGPVIRLDCPSSLPTVFADIDRTEQILVNLL 267 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG--NVESTIDS 178 A G Q+ + ++ G P F + G + Sbjct: 268 GNAIRYTENGSITVKVWQNLNS-VWVAVIDTGIGISEIDLPHVFERFWRGERSRSRQWGG 326 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L ++ E + L Sbjct: 327 TGIGLAITKRLVELQGGKIEVESELGKGSIFRFCLP 362 >gi|167644588|ref|YP_001682251.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347018|gb|ABZ69753.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 645 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 A ++ L + + +L + + H+I +P+ I ++L + V +L+ + Sbjct: 247 ATSLRLALEAAEQASLAKSTFLANMSHEIRTPLNGIVAGADILARSELTPRVRELVDIIQ 306 Query: 58 MSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S + + + G + + E +A++ R+ Sbjct: 307 TSGKSLERLLSEVLDLVRIEAGQVTIETGVFHLGDLTRSVAALCALHAGEKGVALETRIA 366 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + I ++L NL A +G + + S++ G Sbjct: 367 PAADIAVIGDGARVRQVLTNLVSNAVKFTDQGQVAVEVDLGADGQTRISVRDTGVGFDPA 426 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + L L + L Sbjct: 427 E-KARIFGRFQQADASFTRRFGGTGLGLTISRELVELMGGTLSCDSRPGAGSTFWFDLP 484 >gi|150017332|ref|YP_001309586.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903797|gb|ABR34630.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 344 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRL 55 M++N + ++ + + + H+ +P+ +I LL + + E + Sbjct: 109 MSQNFNIMVDELNNIETFRSDFIANVSHEFKTPLASIEGYTTLLQDNNLSKEEKSKYTDK 168 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + + Sbjct: 169 ILNNTKRLSSLVGSILQISRLENQDIIAERSRFKLDEQLRQTLLLLESKWSNKNIDLDID 228 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 + E ++ +N+ A P G + +++ KN S+ NG Sbjct: 229 LDSITFHGNEELLMQVWINILSNAIKFTPEDGTIRCTLKKDKNWITTSISDNGIGMNEDT 288 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + + + + V + ++ L Sbjct: 289 QKHIFDKFYQGDKSHSSEGNGLGLALVKRIIDLCGGKIEVYSECKKGSTFVIKLP 343 >gi|332523080|ref|ZP_08399332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314344|gb|EGJ27329.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 352 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 20/235 (8%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQL 52 +++N+ + +A L S + H++ +P+ ++ +LL + + E++ L Sbjct: 115 LSQNVNQMAQDLKNLAQLRQDFISNVSHELKTPVASLVGLSDLLADSDLNREDQAELLAL 174 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ ++ + ++ DK +Q+ + Sbjct: 175 MQSETLRLSRLCDDILNLSRLDRQDQLRIEKVRVDEQIRHSLILLKEKWKDKEIQIDFQA 234 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + + +I LNL A +TI ++ + + G Sbjct: 235 LPLVWGTDPDLSMQIWLNLLDNAIKYSGIQVNLTIIMKADHKGLSLTFQDKGIGIAPDKL 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F Q + + + + + V + K +L + + L K Sbjct: 295 RYIFDQFYQVDQSHSQEGNGLGLAIVKRIVTLLKGQLEVFSQEGEGTQVILFLPK 349 >gi|330943279|gb|EGH45669.1| sensor histidine kinase [Pseudomonas syringae pv. pisi str. 1704B] Length = 436 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPSPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426 >gi|329765115|ref|ZP_08256698.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138392|gb|EGG42645.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 263 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 81/227 (35%), Gaps = 16/227 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52 + + + S L A+ L SR+ HD+ +P+ I ++ +L + ++L Sbjct: 38 LKEKTKKLIESERLSAIGELSSRVSHDLKNPLTVIKGTVGILKLRKGMPIDDFVMKRLEL 97 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + S ++ + +T L I + + + ++V I + Sbjct: 98 MEASIFRMTHQIDVVLDYVQHTPLDKKDESLKQIIENSLQLQKIPENIRVVLPKNDITYN 157 Query: 113 RERAKILLNLFM---VAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +R K+ + + + ++ G++ I + ++ ++ +G+ E +I Sbjct: 158 CDRVKMEVVIGNLLLNSIQAIGLEKGQIVIEILETPIAITIIIQDSGSGV-PNEHIQKIF 216 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + ++ + + ++ L K Sbjct: 217 EPLFTTKQEGTGLGLSSVQSIIEQHGGIIDLKNNP---TTVTITLPK 260 >gi|254881618|ref|ZP_05254328.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254834411|gb|EET14720.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 616 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 70/220 (31%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + + H+I +P+ AI ++ E +E +Q + + + + Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETENAEERLQYYDIVEKNNMRLQELINE 310 Query: 66 -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V I D++ + + + +S +R ++ Sbjct: 311 ILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQPGVELVFEESDPSLVISTDRNRL 370 Query: 119 LLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVEST- 175 + + K +IS + E +F + G+ +K +I D + + Sbjct: 371 FQVFSNLIGNATKFTAKGSISFGYKLKEKEIVFHVADTGSGI-SDDKIDKIFDRFIMANN 429 Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + ++ + + + L Sbjct: 430 QVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|229521779|ref|ZP_04411197.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TM 11079-80] gi|229341373|gb|EEO06377.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TM 11079-80] Length = 438 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIINDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124 +++ L + E V + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAELAPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|46201697|ref|ZP_00208212.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 458 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 18/203 (8%), Positives = 56/203 (27%), Gaps = 7/203 (3%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + H++ +P+ + +E L + D +++ + + L R Sbjct: 250 FTADAAHELRTPLAVLRAHVETLPDPATRDALVRDLESMTRLIAQLLTVARAEALTVAMD 309 Query: 78 DSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 + + + + + ++V + ++ + L + +L Sbjct: 310 EQADLNAIAVDVGTFLAPMALKQHRMIEVIESPSPCLITANAEAVFNALRNLVENALTHT 369 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYYVILLAH 191 + +N I ++ G + +I + V + Sbjct: 370 PADSTVSVRVENPAILRVEDRGPGI-PAQLRDRIFQRFWRAERRKSGSGLGLAIVREIMM 428 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + R+ E + S + Sbjct: 429 AHSGRVEVEDRPGGGAIFSLIFP 451 >gi|269959398|ref|ZP_06173781.1| Osmolarity sensor protein envZ [Vibrio harveyi 1DA3] gi|269835835|gb|EEZ89911.1| Osmolarity sensor protein envZ [Vibrio harveyi 1DA3] Length = 430 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 66/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFMVAHA 128 + + + E V+ ++ T + + NL + A Sbjct: 280 VNKESFERVDINTITSDVATSEGGYEVEIETDLNPTMPTAKGSPIAIKRAVSNLVVNALR 339 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 K++ V K ++ NG + F G+ + + Sbjct: 340 YGNGWVKISTGVTADKQLVWVCVEDNGPGIEQSQIAKLFEPFTRGDTARGSEGTGLGLAI 399 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + Sbjct: 400 VKRIVSQHSGSVVVRNRSEGGLSAQISFP 428 >gi|227431099|ref|ZP_03913157.1| signal transduction histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353139|gb|EEJ43307.1| signal transduction histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 366 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELL-----DEVGIEDEV 49 + + + + L AL+ S + H++ +P+ + +ELL D+ + ++ Sbjct: 118 LTRILNRTID--RLQALISAQQQFVSDVSHELRTPVTIVKGHMELLNRWGKDDPEVLEDS 175 Query: 50 MQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106 ++ + + L VD++ + D+ + K + ++ Sbjct: 176 IKSSLAEVQRMETLINEMLNLTRAEQIPVDNVKEITDVGGTMHRIYDNFKMIHPDFSFTL 235 Query: 107 --------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 +IL+ L A ++ ++ + N ++ G Sbjct: 236 DDDLSTKARVKIRQDHMEQILIILADNAVKYSLDRHEIHFALSQTANRVEIGVQDFGEGL 295 Query: 159 RFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + F + + + L + E + + + L Sbjct: 296 KPEDAKCVFDRFYRVDKARSRAKGGTGLGLSIAQRLVEAYGGAIALESAEGSGSIFTIYL 355 Query: 214 E 214 Sbjct: 356 P 356 >gi|298528098|ref|ZP_07015502.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511750|gb|EFI35652.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 741 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 20/222 (9%) Query: 12 MDLVA--LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLK 65 L A + RI H+I +P+ I S + L++ + Q +L + Sbjct: 511 QRLAAWREVARRIAHEIKNPLTPIKLSAQRLEKKFSSSVRDPSFEQSTQLIIRQVENLQQ 570 Query: 66 FMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 +R + + L + + +++ S +R + Sbjct: 571 MVREFSTFAKLPEVRPRTDSLDSLVQEVVSMFEQSHRQIGWELTIASNIPQFSFDRDAMK 630 Query: 120 LNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGNV 172 L + + K N + NG E+ ++ + Sbjct: 631 RVLLNIFLNAAEAIDKTGDGKVSIDLDYDAQLNRVFVQVADNGPGLSSEER-ARLFEPYY 689 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + ++ + + V L Sbjct: 690 SSKKEGTGLGLAIAKSIVSDHGGYVRVKSNQPRGTVFVVELP 731 >gi|225575706|ref|ZP_03784316.1| hypothetical protein RUMHYD_03799 [Blautia hydrogenotrophica DSM 10507] gi|225037086|gb|EEG47332.1| hypothetical protein RUMHYD_03799 [Blautia hydrogenotrophica DSM 10507] Length = 382 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 74/243 (30%), Gaps = 28/243 (11%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRL 55 M K + + L S I HD+ +P+ AI +E + + E M+ Sbjct: 133 MRKRLKESAEERVVLDKENKELISNISHDLKTPMTAIKGYVEGIMDGIADTPEKMERYIR 192 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------- 99 + + + + + +D+ ++ + D Sbjct: 193 TIYNKTNEMDHLINELTFYSKIDTNRIPYTFSKLNVEDYFNDCAEELSVEMETRNIELVY 252 Query: 100 -VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNL 157 V + I + +++ N+ + + + + I V+D + ++ NG Sbjct: 253 ANYVDNKVQIIADGEQIRRVIHNIISNSIKYMDKKKGIIQIRVKDVGDFIQIEIEDNGKG 312 Query: 158 ARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + +V I V + ++ ++ + ++ + Sbjct: 313 IAAKDLTNIFDRFYRTDVSRNSSKGGSGIGLSIVKKIMEDHGGKVWATSREGIGTIMYFV 372 Query: 213 LEK 215 L K Sbjct: 373 LRK 375 >gi|196045140|ref|ZP_03112373.1| sensory box histidine kinase [Bacillus cereus 03BB108] gi|229184110|ref|ZP_04311321.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1] gi|196024142|gb|EDX62816.1| sensory box histidine kinase [Bacillus cereus 03BB108] gi|228599399|gb|EEK57008.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1] Length = 288 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50 MAK++ ++ + + + S I HD+ +P+ ++ +LL + E V Sbjct: 46 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGSQFHTNREECEQYVS 105 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100 L R S + ++ + +++ ++E + + + Sbjct: 106 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 165 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++ N+ + G ++ I + +K G Sbjct: 166 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQCIPN 225 Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + G + +A +K + + V + L + Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALPR 284 >gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1053 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 57/237 (24%), Gaps = 28/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57 AK + L + I H+I +P+ I ELL E + E + LI S Sbjct: 673 AKEKAEESDRLKTAFL--ANISHEIRTPMNGILGFSELLKEPHLSGEEQTEYINLINQSG 730 Query: 58 MSAIIRLKFMRLAFGY--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + E + + Sbjct: 731 QRMLHLINELVDISRIESGDTFLQITETSINRLMHDIYAFFRPEAAKKGLLFECIVGLSD 790 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 S + +IL NL A G + F + +G E Sbjct: 791 LFSVIDTDSSKVNQILTNLVQNALKFTTEGSVDFRYTLKND-CLEFYVTDSGACI-PSEM 848 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + ++ E I+ L Sbjct: 849 KEKIFDRFRQVDNSLTRRYEGAGLGLSISKAYIEMLGGKIWVESIEGRGNRFVFTLP 905 >gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 918 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAACVETIASSGN 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L NL A G + ++S+ +G Sbjct: 515 RRLNGDPTRLRQVLTNLLGNALKFTAEGHVALRVQRRFDEAGRERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|121726709|ref|ZP_01679934.1| osmolarity sensor protein EnvZ [Vibrio cholerae V52] gi|147673138|ref|YP_001218201.1| osmolarity sensor protein [Vibrio cholerae O395] gi|153212525|ref|ZP_01948272.1| osmolarity sensor protein EnvZ [Vibrio cholerae 1587] gi|153802197|ref|ZP_01956783.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-3] gi|262170045|ref|ZP_06037734.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae RC27] gi|4433394|gb|AAD20724.1| sensor outer membrane protein EnvZ [Vibrio cholerae] gi|121630870|gb|EAX63252.1| osmolarity sensor protein EnvZ [Vibrio cholerae V52] gi|124116396|gb|EAY35216.1| osmolarity sensor protein EnvZ [Vibrio cholerae 1587] gi|124122271|gb|EAY41014.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-3] gi|146315021|gb|ABQ19560.1| osmolarity sensor protein EnvZ [Vibrio cholerae O395] gi|227014599|gb|ACP10809.1| osmolarity sensor protein EnvZ [Vibrio cholerae O395] gi|262021453|gb|EEY40165.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae RC27] Length = 438 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124 +++ L + E V + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAELAPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432 >gi|298293988|ref|YP_003695927.1| histidine kinase [Starkeya novella DSM 506] gi|296930499|gb|ADH91308.1| histidine kinase [Starkeya novella DSM 506] Length = 432 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 63/224 (28%), Gaps = 22/224 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 + + H++ +P+ ++ +E L + + ++++ + + Sbjct: 198 EQMRVDFIANASHELRTPLASLSGFIETLQGPARNDANARERFLKIMGEQARRMSRLIDD 257 Query: 67 M-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----- 116 + + + + I V + + + V E Sbjct: 258 LLSLSRIELNAHLRPEAEIDLVSVISHVRDALGPLGRERGVEIAFEHPQPPVNVRGDRDE 317 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN 171 ++ NL A GG+V I++ + + S++ G + + Sbjct: 318 LIRVFENLVENALKYGGAGGRVEIAIAREGGDAVVSVRDYGPGIAPEHVPRLTERFYRVD 377 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + ++ +L E + S L Sbjct: 378 TAHSREQGGTGLGLAIVKHIVARHRGKLGIESVPGEGSTFSVRL 421 >gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1009 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 60/243 (24%), Gaps = 33/243 (13%) Query: 2 AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + D ++ + + H+I +P+ AI +LL + +++ + + Sbjct: 607 QEALQIARDRADAASVAKGEFLAMMSHEIRTPMNAIIGYTDLLRQTNLDELQAEQASIIK 666 Query: 58 MSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAV-----DKRVQ 101 S L+ + Y+ VD + + + I D + Sbjct: 667 RSGKALLELINNILDYSKIESRTLELETSNVDVEQVVCEALEYILPQSKEKALKIDFEIS 726 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK------NENIFSLKING 155 + +IL+N A G + F + G Sbjct: 727 ETVNAAYWGDPHRLRQILMNFANNAVKFTDTGSIRIDVDLKHSESSPDTHALYFRVTDTG 786 Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 +KF ++ + L R+ Sbjct: 787 CGI-PEDKFDRLFKPFSQVDSSTTRQFGGTGLGLVISKRLIERMDGRVWVSSQVGEGTTF 845 Query: 210 SAL 212 + Sbjct: 846 HFV 848 >gi|291280336|ref|YP_003497171.1| hypothetical protein DEFDS_1964 [Deferribacter desulfuricans SSM1] gi|290755038|dbj|BAI81415.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 442 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 64/229 (27%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M + + + + L I HD+ + + I + + L + +++ ++ Sbjct: 206 MKRLEKNLIQNEKNITLGRFVDNIAHDLKNMLTGIFSICDYLKSKTLSEDIKCMVEQIYK 265 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDL 111 + +F+ D + VQ Sbjct: 266 YTKVMDEFISTMRNVGNKKDIIDIDFCRYLSENKDFYRRIIGKNIKIDVQCDCHCCGFMS 325 Query: 112 SRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +I LNL + A ++ GG +TI + + NGN + Sbjct: 326 KTHLDQIFLNLLVNARDAIMEKYEDGNGGLITIKINCISENIFIEVTDNGNGI-PDDIID 384 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + V + + + E + L Sbjct: 385 KIFSLSFTTKDEGTGVGLFIVKSIVEQYGGSIEVESGLNKGTTFKVKLP 433 >gi|228907188|ref|ZP_04071050.1| hypothetical protein bthur0013_13590 [Bacillus thuringiensis IBL 200] gi|228852520|gb|EEM97312.1| hypothetical protein bthur0013_13590 [Bacillus thuringiensis IBL 200] Length = 421 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKSLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLCDYIQQLLASEVFLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGVGIPLA-IQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSAPD-GTTFTISIP 409 >gi|253701431|ref|YP_003022620.1| histidine kinase [Geobacter sp. M21] gi|251776281|gb|ACT18862.1| histidine kinase [Geobacter sp. M21] Length = 602 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 69/230 (30%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSS 57 + L + + A+ L + H+I +P+ AI +++++ + V+ + ++ Sbjct: 363 LEATFDELLVAKKVAAVGHLALGLAHEIRNPLSAIQMNMQMIRKKIEPTGVLCENFSIAD 422 Query: 58 MSAIIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + ++ + L + V + E Sbjct: 423 GEIKRLNRLLKDVLDFARPRPVRLQTADLTGIVRRLLQLVDQRLAQHGVTTVTDLESPLE 482 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKF 164 + + ++LLNL + A ++ + + + +G P+K Sbjct: 483 LVCDPEQIHQVLLNLVLNAMEAMEGIEGDRTLKVAAYRRETQAYVLVSDSGRGI-APDKC 541 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ D + I + + + + + + +L Sbjct: 542 EQLFDPFYTTKISGGGLGLSILQTIVLSHGGSVSVTGGTGAGATFTVVLP 591 >gi|194337195|ref|YP_002018989.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309672|gb|ACF44372.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 1148 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 30/235 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIRLSSMSAI 61 M++V L I HD + + I E+ L + Q S+ Sbjct: 765 QKMEMVGRLAGGIAHDFNNMLTVILGHSEMAMETSDPTLKTYAQFVAIHQAATHSANLTR 824 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKI 118 L F R V+ + ++ ++ I + + + + + +I Sbjct: 825 QLLAFARKQVVSPKIVELNTAITEMLPMLRRLIGENIMLTWIPECKNCYIKIDPSQIDQI 884 Query: 119 LLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 L+NL + A ++ + + S + S+ +G + Sbjct: 885 LVNLCINARDAITGNGRITIDNRCVTLPEIPCETDKTACHSADYVSLSVHDDGCGIEPND 944 Query: 163 KFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + V + +N + ++ L K Sbjct: 945 L-QHIFEPFFTTKESGKGTGLGLSTVYGIVKQNNGNIECRSEQGKGTTITIQLPK 998 >gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 409 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 39/237 (16%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + + H++ +P+ AI E+L E + LI + L Sbjct: 167 SQFLANMSHELRTPLNAIIGYSEMLQEEAEDLAQEDLIPDLKRIHGAGTHLLGLINDILD 226 Query: 76 S--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAK 117 V+ + + +I ++ + + V V + + Sbjct: 227 LSKIESGKVELYLETVNISLLIREIIIMVRPLVEKNANVLVVDCADNLGYMKTDLTKVRQ 286 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN--------------ENIFSLKINGNLARFPEK 163 L NL A +G ++ + +F + G PE+ Sbjct: 287 SLFNLLSNACKFTKKGKITIKVEKEYRKSGTLNGEEHKSAILYILFKVTDTGVGI-SPER 345 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L+ + E + LL Sbjct: 346 MEKLFQPFTQADASTTREYGGTGLGLAITKKLSRIMGGDIFVESEVGKGSTFTILLP 402 >gi|258623303|ref|ZP_05718309.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573] gi|258584435|gb|EEW09178.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573] Length = 573 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 65/246 (26%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + + + + L L + + H++ +P+ A+ +++L +V Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRSDSTSYQV 244 Query: 50 MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 L ++ + + + + + + + Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + + E S +IL N+ A + G+V I + ++ ++ Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKQ-GRVDIQLNYIEDGIDIQVQDT 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + + D + Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTINVDSKIDIGTL 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLRIP 428 >gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 631 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL+ ++ + + + + Sbjct: 241 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRGIEAIERSA 298 Query: 62 IRLKFMRLAFGYT---------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + D L + + + + + Sbjct: 299 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIETEFLPVP 358 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG + +SV + + +++ G P Sbjct: 359 MLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPTFLPHI 418 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + L + R+ D ++ L Sbjct: 419 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGTTMAVSLP 472 >gi|228943431|ref|ZP_04105875.1| hypothetical protein bthur0008_60010 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976314|ref|ZP_04136785.1| hypothetical protein bthur0003_60070 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783418|gb|EEM31526.1| hypothetical protein bthur0003_60070 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816211|gb|EEM62392.1| hypothetical protein bthur0008_60010 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 429 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 15/237 (6%), Positives = 58/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + + + + H++ SP+ +I +L + + + Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-------DFIAVDKRVQVSWT 105 I + + L + + + Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRTIVALQPQWSARDIHFELD 306 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ N+ + G + +S++ + G + Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDTTNVTILISDTGIGIHLDD 366 Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + + L Sbjct: 367 QKRIFERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423 >gi|229012627|ref|ZP_04169800.1| hypothetical protein bmyco0001_30700 [Bacillus mycoides DSM 2048] gi|228748650|gb|EEL98502.1| hypothetical protein bmyco0001_30700 [Bacillus mycoides DSM 2048] Length = 429 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + + + + H++ SP+ +I +L + + + Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105 I + + L + V + + Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ N+ + G + +S++ + G + Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDD 366 Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + + L Sbjct: 367 QKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423 >gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 780 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 59/236 (25%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ +I ELL E + E +++ + Sbjct: 392 AKEQAEAANRTK--SEFLAMMSHEIRTPMNSILGMAELLSESPLTPEQQGYLKIQRRAGH 449 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWT 105 Y + L + ++E+ Sbjct: 450 GLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENLARERGLALRLERMEEIP 509 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPE- 162 +I++NL A G + S + +F + +G + Sbjct: 510 TLCQGDRARLRQIMVNLVGNAIKFTHDGSVKISVEKSSDDATNLLFHVIDSGIGIAEKDQ 569 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + L ++ + + L Sbjct: 570 SSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLKSALGEGSCFTFTLP 625 >gi|323705242|ref|ZP_08116817.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535144|gb|EGB24920.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 65/219 (29%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK------ 65 L A L I H++ +P+ + + LE + + E + + + + Sbjct: 232 LRAQLTQNIAHELRTPLSTLKSHLEAIIDGVWEPSKERIVSLYEEVVRLSNLINDIELLN 291 Query: 66 -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +++ + + L + I + + +++L+ Sbjct: 292 KIEIDNLKINKVRFNLSELIKSLLINYESIFINKNQHLEKNIEDDIFVVADKDRISEVLI 351 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175 NL + A+ GG + + + + + ++ NG + + + + Sbjct: 352 NLLVNANKYTGEGGNIKVKLYNEGQFAVITVSDNGIGIPKEDLPFIYERFYRSEKSRSRD 411 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E I + + L Sbjct: 412 YGGSGLGLSIAKAIIKAHNGTINVESILNQGTKFTVKLP 450 >gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 1150 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/247 (10%), Positives = 64/247 (25%), Gaps = 35/247 (14%) Query: 2 AKNICFNLSS---MDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + L S +L + + + H++ +P+ AI E+L E D Q+ + Sbjct: 901 KETEIMLLESRNRSELANRVKSQFMANMSHELRTPLNAIIGYSEMLQEEYRSDPQGQIYQ 960 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------------- 100 + +++ D ++ D + ++V Sbjct: 961 DMERVQKAGRQLLQIINDILDMADLESQTAQLQAESFDICSEARQVAQSVQAAIHKNGNT 1020 Query: 101 ----QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKI 153 G ++ ++L++L A G V+ + S+ + ++ Sbjct: 1021 LDVRCDENIGTMYSDRQKIRQVLIHLLNNAGRFTENGQVALTVSAEQRHSEPWVLLRVRD 1080 Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G QI + + + + Sbjct: 1081 TGIGIDPS-IHEQIFEPFTLGDSSSTRLYGGSGLGLSISRRFCEMMGGAITLQSETGKGA 1139 Query: 208 VLSALLE 214 + L Sbjct: 1140 EFTVALP 1146 >gi|254491051|ref|ZP_05104232.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxidans DMS010] gi|224463564|gb|EEF79832.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxydans DMS010] Length = 721 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 65/235 (27%), Gaps = 25/235 (10%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV--------------GIED 47 +I L + A + R+ H+I +P+ I S E L + Sbjct: 482 DITALLQAQRNAAWGEVARRLAHEIKNPLTPIQLSAERLQRKYSALVPADQTNTVNKLTG 541 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTG 106 ++Q + ++ R + + ++ + + + Sbjct: 542 TIVQQVEAMKEMVNEFSEYARSPALQMQTHSIGGLIRELLTLYQSNPNHQFALLNSRDDI 601 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLAR 159 + +++ NL A + + +++ +++ +G Sbjct: 602 LIRIDANRFRQVMHNLLKNAIEACEDAKQAVDIVISYHPIEIKNQHWLEITIRDHGPGI- 660 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + E+ + E + D + L Sbjct: 661 PEPIIDKLFEPYATTKFKGTGLGLAIVKKIIEEHGGDVWAENLGDEGTSIIIRLP 715 >gi|222100206|ref|YP_002534774.1| Sensor protein [Thermotoga neapolitana DSM 4359] gi|221572596|gb|ACM23408.1| Sensor protein [Thermotoga neapolitana DSM 4359] Length = 744 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 74/227 (32%), Gaps = 16/227 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + ++ + +R+ H+I +PI I ++ + + + E ++ Sbjct: 512 EEERKKKERLSILGEMTARVAHEIRNPITIIGGFVKRMRKHIDDPETLKKYVDIITGELS 571 Query: 59 ----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 L++ + S +L L V+ + + + + + D Sbjct: 572 RLEGIVREILEYSKEEQILEFSEFNLNELIKEVYVLFEEKLREMNIDFFFETDNEDLRVK 631 Query: 111 -LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L+NL A + GK+ I +D N S+ +G E +I Sbjct: 632 ADRSRIKQVLINLVQNAIEATGENGKIKIKSEDVYNVARVSVWNSGPPI-PEELKEKIFS 690 Query: 170 GNVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 + + + E+ ++ E + V+ + K Sbjct: 691 PFFTTKTQGTGLGLPICRKIVEDEHGGKIWVENTEG-GVMFIFEIPK 736 >gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis Bt4] gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 987 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 M K L + + + + H+I +P+ AI +LELL + ++ + Sbjct: 485 MRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSER 544 Query: 53 IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +++ + L D L +I Sbjct: 545 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQL 604 Query: 102 VSW-----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 +S +IL NL A RG Q + + Sbjct: 605 LSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQGDSAIEIWVN 664 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + LA + + + D Sbjct: 665 DTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGT 724 Query: 208 VLSALLE 214 ++ +L Sbjct: 725 TVTVVLP 731 >gi|154505635|ref|ZP_02042373.1| hypothetical protein RUMGNA_03174 [Ruminococcus gnavus ATCC 29149] gi|153794074|gb|EDN76494.1| hypothetical protein RUMGNA_03174 [Ruminococcus gnavus ATCC 29149] Length = 243 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 67/208 (32%), Gaps = 14/208 (6%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H+I +P+ + ++L+++++ E + + ++ + + S + Sbjct: 36 STISHEIRNPLTLVSSALQVMEKQNPELKDIPHWSQVMGDVDFIIQLLEELSAFNSSNEL 95 Query: 80 LIGLGDIEQV-------------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + IEQ+ + GE + +++LNL A Sbjct: 96 YYSVFSIEQLLKNVAISFAISLDTNEADIEFSSSISDSLGEFTGDKIKLQELVLNLLKNA 155 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++ G + ++ S + + G PE+ I V + + Sbjct: 156 EEAITEQGSIHLAASRSGDIITITCTDTGCGI-TPEQMECIFQPFVTYKPGGTGLGLAFS 214 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A ++ L + + L Sbjct: 215 RKIAEAHEGTLTAVSTPQESTTFTVTLP 242 >gi|153828356|ref|ZP_01981023.1| osmolarity sensor protein EnvZ [Vibrio cholerae 623-39] gi|254225436|ref|ZP_04919047.1| osmolarity sensor protein EnvZ [Vibrio cholerae V51] gi|125622070|gb|EAZ50393.1| osmolarity sensor protein EnvZ [Vibrio cholerae V51] gi|148876186|gb|EDL74321.1| osmolarity sensor protein EnvZ [Vibrio cholerae 623-39] Length = 438 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 850 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 61/239 (25%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K+ ++ + + + H+I +P+ + ++L + +E + + Sbjct: 355 LNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDLTLMSDLNNEQRDNLETAKSCV 414 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + E + VD + Sbjct: 415 DSLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSISSDL 474 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP 161 I ++L NL A KV I+ D+ +F + G Sbjct: 475 PEYIIGDQLRIKQVLNNLLSNALKFTEAGSINLKVDINTIDNDEFILFEVSDTGVGI-AD 533 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + L + + + S ++ Sbjct: 534 EDMEKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKMGGSIWIKSEKGIGSTFSFTIK 592 >gi|295398638|ref|ZP_06808663.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563] gi|294973126|gb|EFG48928.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563] Length = 631 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 63/225 (28%), Gaps = 27/225 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S I H++ +P+ ++ + E L + + E + +I+ + I + + Sbjct: 387 QFVSNISHELRTPLTSVRSYSEALVDGAIKDEKVAVEFLNVIQTETDRMIRMISDLLHLS 446 Query: 72 GYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRE 114 L +++ K + + Sbjct: 447 RMDAKQQVINRELIIFKDLVNHILDRFNMMLQSEDYEGKNYIIKRELMEEEVWVEIDQDK 506 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171 +++ N+ A P GG + + + + N+ + S++ G P F + + Sbjct: 507 LIQVIDNIMNNAIKYSPDGGTIYVRLMSTHNQLVLSIQDQGLGIPQESIPHLFDRFYRVD 566 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ I++ L Sbjct: 567 KARSRAQGGSGLGLSIAKEEIELHNGKIWVNSIENKGTTFFISLP 611 >gi|229025081|ref|ZP_04181508.1| hypothetical protein bcere0029_33850 [Bacillus cereus AH1272] gi|228736191|gb|EEL86759.1| hypothetical protein bcere0029_33850 [Bacillus cereus AH1272] Length = 516 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ + + + D+ Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQALIEEVVTFILPTAVMHSVHIIMDHFDYISDI 400 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167 + ++ L + ++ + + + G E+ ++ Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506 >gi|158522345|ref|YP_001530215.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511171|gb|ABW68138.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 587 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 71/227 (31%), Gaps = 24/227 (10%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------------QLIR 54 + L ++ L + + H+I +P+ I+ L+ ++ + + + Sbjct: 350 ANKLASIGRLAAGVAHEINNPLAVINEKAGLIKDIFQLTDRYAGDEKLLGLVDAINESVA 409 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSR 113 L F R VD + D+ + ++ + + + + Sbjct: 410 RCGRITKQLLSFARHMDFSVQPVDIRAVISDVVGFLGKEAEYRNIAITIDVPPDIPQFET 469 Query: 114 ER---AKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +R +ILLNL A A+L GG +TI+ + + + G + +I + Sbjct: 470 DRGKLQQILLNLINNAFAALSEGGALTITANRVNGKTLRIRINDTGCGISDKDLK-RIFE 528 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L E + E + L Sbjct: 529 PFFSTKTSTGGTGLGLSITYSLVQELGGVIDVESEVGVGTQFTITLP 575 >gi|94968618|ref|YP_590666.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94550668|gb|ABF40592.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 447 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 16/223 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +A+ + +L +L + + I H+ + + I ++L ++ V + Sbjct: 217 LARQMRVR---ENLASLGEMSAGIAHEFKNSLATISGYAQMLK-GEPDETVSEFATRIQG 272 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSR 113 + + + ++ V+ED A + +V + + Sbjct: 273 TTENLTSVVTDFLNFARPQQLKREPIELRPVLED-CARETKVTLEFQNFPDRLVVNGDRT 331 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ NL A + V ++V+ + SL NG E I Sbjct: 332 ALRQVFSNLLRNAAEAARNNTPVRVTVRASATDTSVELSLHDNGTGI-PEEALKNIFIPF 390 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E+ + V + L Sbjct: 391 FTTKPQGTGLGLALVHRIVTEHGGSIRAGNDL-EGAVFTLSLP 432 >gi|91203575|emb|CAJ71228.1| similar to sensor histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 377 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54 + +SS L L + I H+I +P+G I +S L D + I+ Sbjct: 144 RQMENEIISSERLAVLGKVSGSIAHEIKNPLGVIDSSAYYLGLKLKDADEKIKTHIDRIK 203 Query: 55 LSSM----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + ++ YT + + ++ + + + ++ T Sbjct: 204 SQVKKATGIIQNLVDVAKMKEPYTETAGIHAIIENVLTTLNLPQTIAVKKKIEDTLVAKA 263 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQ 166 + + N+ + A S+ G ++IS + ++ G PE + Sbjct: 264 DKGQLEMVFRNIIVNAVQSMEECGILSISCLEKPLEKNRFIEIRIQDTGPGIM-PEDRER 322 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ + + E L Sbjct: 323 IFEPLFSTKTTGIGFGLTICKMIIERHGGTITVESEKGKGAAFILQLP 370 >gi|332968993|gb|EGK08035.1| phosphate regulon sensor histidine kinase protein PhoR [Psychrobacter sp. 1501(2011)] Length = 508 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 68/228 (29%), Gaps = 22/228 (9%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAII 62 L ++ + + H++ +P+ I +E + L+ + Sbjct: 262 RLQHLEQMRKDFVGNVSHELRTPLTVIMGYIETFSDQPDLDPKWRRGFNLMTQQTERMNR 321 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL--- 119 + + L D+ +++ + + + + Sbjct: 322 IINDLLLLSRLENEESIRTERVDMPKLMTSIFDDAQAYNKDFGHLIDLHIDSQLDVYGSE 381 Query: 120 -------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 LNL A P+GG++ I+ Q+ K FS++ NG E ++ + Sbjct: 382 VYLNSALLNLVTNAIKYTPKGGEIRINWQEVKGGCSFSVQDNGIGI-ASEHIDRLTERFY 440 Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +++ +L + ++ + Sbjct: 441 RVDSGRSRSTGGTGLGLAIVKHVLYQHGAKLTIQSEENKGSTFTVFFP 488 >gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 596 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 70/241 (29%), Gaps = 28/241 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 +++ L + + H++ +P+ + E L + E+ Q+I S Sbjct: 349 RDVTEEHRMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPDERKELAQVIHDES 408 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +K + T + L Q +A ++ +++ + + Sbjct: 409 LRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGN 468 Query: 111 L------SRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160 ++L NL A VT+ + + + + ++ G Sbjct: 469 HLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPA 528 Query: 161 PEK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + V + + ++ + I S L Sbjct: 529 EDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLP 588 Query: 215 K 215 K Sbjct: 589 K 589 >gi|320354104|ref|YP_004195443.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122606|gb|ADW18152.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 407 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 67/242 (27%), Gaps = 29/242 (11%) Query: 1 MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIED 47 + K + + + L + + H+I +P+ AI+ + L + + Sbjct: 153 LEKEFQAQFYQAEKMATVGALAAGVAHEINNPLTAINGFAQGLKRRISRLQGKIDDDLFC 212 Query: 48 EVMQLIRLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + + + L F R G V+ + D +++ + Sbjct: 213 DFKEYTETIIKECLRCRDIVQTLLTFSRPTASSRGHVNINQCVTDTLFILKHHFKEQHDL 272 Query: 101 QV-----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKIN 154 V + + ++++NL A + GG + I + ++ + Sbjct: 273 TVKTELQEDLPAILGDESQLKQVIINLLTNALDATSNGGLIQIKTYSDETAGVTLVIEDS 332 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E ++ + + I + + + + Sbjct: 333 GCGIPL-ELQDKLFEPFFTTKPVGKGIGIGLSTCYSIVKNHNGEINVTSVVGTGSAFRVS 391 Query: 213 LE 214 L Sbjct: 392 LP 393 >gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 578 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 A+NI + + S + H++ +P+ AI SL LL + + + + Sbjct: 335 AQNISERRAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALL 394 Query: 58 ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106 + + + +G V + ++++ I + + + Sbjct: 395 ETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTS 454 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + L NL A P VT+S + +F ++ G + T Sbjct: 455 VQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKT 514 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E + + Sbjct: 515 IFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIPR 569 >gi|262190728|ref|ZP_06048958.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae CT 5369-93] gi|262033405|gb|EEY51913.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae CT 5369-93] Length = 438 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124 +++ L + E V + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAELAPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM 17393] gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM 17393] Length = 1045 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 56/229 (24%), Gaps = 18/229 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + L + + H+I +P+ AI +L + ++E + I + + Sbjct: 675 AKEKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSSILADTEEQEEKEEYINIIENNNT 732 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106 + +D +IE+ + + + + Sbjct: 733 LLLQLVGDILELSKIESGTLEFVFSDLDLNALFKEIEESAQLRQKNEAVPIRYIPEMPDC 792 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ N+ A G + F + G +K T Sbjct: 793 TVNIERNRLTQVMTNMLNNAMKFTYSGSVTFGYRLKDTDSLYFYVTDTGCGIEEDKKDTV 852 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E L Sbjct: 853 FGRFVKLDSFSQGTGLGLSICQSVVENLGGSIGVESEPGKGSTFWFTLP 901 >gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] Length = 1343 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEV--MQLIRLSS 57 M K ++ M L + I H++ +P+ I + E+LD+V ++ ++ ++ Sbjct: 816 MDKERQKEVNEMKLRFFI--NISHELRTPLTLILAPVQEMLDKVSDRWLHKQLEYVQKNT 873 Query: 58 MSAIIRLKFMRLAF------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + E++ + + Sbjct: 874 NRLLHLVNQLMDYRRAELGVFNLKVRPNPIHNVIEKDFSFYERLAQRKQIAYNLHSNAEG 933 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E + I+ NL A G +T+++++ +E + +K G+ +K Sbjct: 934 REILCDPDYMELIVNNLLSNAFKYTGEGKSITVTLKEENHELLLQVKDTGDGI-PFDKQG 992 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + I V L + R+ E + S L Sbjct: 993 KIFERFYQIDNEHLGSGIGLSLVQRLVDLHHGRIELESEEGAGSTFSVYLP 1043 >gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 602 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 70/241 (29%), Gaps = 28/241 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 +++ L + + H++ +P+ + E L + E+ Q+I S Sbjct: 355 RDVTEEHRMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPDERKELAQVIHDES 414 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +K + T + L Q +A ++ +++ + + Sbjct: 415 LRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGN 474 Query: 111 L------SRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160 ++L NL A VT+ + + + + ++ G Sbjct: 475 HLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPA 534 Query: 161 PEK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + V + + ++ + I S L Sbjct: 535 EDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLP 594 Query: 215 K 215 K Sbjct: 595 K 595 >gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] Length = 1337 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 21 RICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + H+I +P+ I E L +Q I +S + + + S Sbjct: 820 NVSHEIRTPLTVIIGLAESLLHTQRFTADIYNKLQGIYRNSNLLRDLISELLDFKKHEQS 879 Query: 77 VDSLIG-----------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L + ++ + + V V E R+ K++ NL Sbjct: 880 LAHLCVEAVDWSAFVGSICNMFKEYANSNDVTLNVNEGTDAEVWIDKRQMRKVVNNLISN 939 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHD 180 A P+GG V ++ + + I + G + + Sbjct: 940 ALKHTPQGGNVNVTTECDGRQVILRVTDTGKGIAETDLAHVFDCFYQARDFESLTEMGTG 999 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + ++ + + + + L Sbjct: 1000 IGLNLTQNIVQQHHGTISVDSVINEGTTFVVTLP 1033 >gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80] gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80] Length = 984 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + E I + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 690 >gi|126736264|ref|ZP_01752006.1| Probable two-component sensor histidine kinase [Roseobacter sp. CCS2] gi|126714085|gb|EBA10954.1| Probable two-component sensor histidine kinase [Roseobacter sp. CCS2] Length = 345 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 19/242 (7%), Positives = 66/242 (27%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 ++ + + + + H++ +P+ A+ +E L D+ D + ++ + Sbjct: 100 EDQTAAEDASQMRRDFVANVSHELRTPLTALLGFIETLNGAAKDDPVARDRFLGIMANEA 159 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108 + + + A V ++ Sbjct: 160 NRMTRLVDDLMSLSRVEEDERVRPREHVDLGALLSSVIKGLEPQANAAGVTVTLNLVTTD 219 Query: 109 IDLSRERAKILLNLFMVAHASLPRGG----------KVTISVQDSKNENIFSLKINGNLA 158 + + +++ + ++ G ++ + + S+ G+ Sbjct: 220 EMVPGDAGQLVQVFTNLVENAIKYGASGQVVTVRLLPRAMNQRLRCDAVQISVSDKGDGI 279 Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + + + V + + ++ RLL E + +S Sbjct: 280 PAHHI-ARLTERFYRVDNHRSREVGGTGLGLAIVKHIINRHRGRLLIESDEGQGTQVSVF 338 Query: 213 LE 214 L Sbjct: 339 LP 340 >gi|226357435|ref|YP_002787174.1| histidine kinase [Deinococcus deserti VCD115] gi|226319425|gb|ACO47420.1| putative histidine kinase, classic [Deinococcus deserti VCD115] Length = 1416 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 20/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 N+ S+ DL + HD+ SP+ I + LEL++ M ++ Sbjct: 1186 NVELQRSNADLE-HFAAVASHDLKSPLRTIRSYLELIERRLTGQLDERSMRYMGFATEAA 1244 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDL 111 + + + + +++V Sbjct: 1245 ARMDTLIDDLLAYARVGRQRNITRVEPQRVVQEVLGGLTASIQERGAQIRVGDLMPVQAD 1304 Query: 112 SRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ NL A P R +V I +F ++ NG E + ++ Sbjct: 1305 ESQLRQVFQNLVGNALKFQPEGRVPEVMIDATRDGRYVLFQVRDNGIGI-SEEYYERVFA 1363 Query: 170 GNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + V + E+ R+ + L Sbjct: 1364 LFQQLHGKSEFPGSGLGLAIVRKIIEEHDGRIWLTSVVGEGTTFHFTLP 1412 >gi|226309650|ref|YP_002769544.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226092598|dbj|BAH41040.1| probable two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 477 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 17/227 (7%), Positives = 64/227 (28%), Gaps = 18/227 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + ++ + + H+I +P+ +I L++ ++ + + + + + Sbjct: 252 QKLERNERLAMIGQIAAGTAHEIRNPLTSIKGFLQMFLKLFGDSGMEREKTYTEIMLTEI 311 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116 + L + + + F + V+ ID+ Sbjct: 312 NRINSLVSEFLLLSKPRNIQYSMVDLNTVFEEILPIVESQANLYGIDVQFASCGKLPMVV 371 Query: 117 -------KILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ +N+ ++ G +++ ++ + +G +I Sbjct: 372 GDNELLKQVFINICKNGIEAMGEQGSLQISHHFDQDGDKVSIDIHDSGPGIPLY-IIDKI 430 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + H+ ++ +L Sbjct: 431 FDPFFTTKEEGTGLGLSVCQKIIHDIGGQIRV-SSKGFGTTFHIMLP 476 >gi|237653315|ref|YP_002889629.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T] gi|237624562|gb|ACR01252.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T] Length = 913 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56 + L +D L S + H++ +P+ +I E++ + + +I Sbjct: 671 RAANERLKELDRLKDDFMSSVTHELRTPLTSIRALSEMMLDDPDIDVEDRQRFLGIIVSE 730 Query: 57 SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVSW 104 ++ + A + +D + Q+ D A Sbjct: 731 AVRLSRLVNQVLDMAKIESGHAEWHNTDIDLCELVRHSGDATLQLFRDRGAELHLHLPES 790 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE- 162 +++LNL A +P G ++K NG + Sbjct: 791 VPTLRADHDRLLQVMLNLLSNAAKFVPTGSGRVDVTLSCDGERLRVAVKDNGPGIEPAQQ 850 Query: 163 --KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G E + + RL E + S L Sbjct: 851 PVVFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWLESVPGEGATFSFELP 905 >gi|219855335|ref|YP_002472457.1| hypothetical protein CKR_1992 [Clostridium kluyveri NBRC 12016] gi|219569059|dbj|BAH07043.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 669 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 74/235 (31%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55 + + L + L + HD+ SP+ I S+ + + + +++ I Sbjct: 425 QEASKVQIERERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLIGIYN 484 Query: 56 SSMSAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I ++ + + +++ + + RV+V+ + Sbjct: 485 DTEWLIRLVENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYHRVKVNIPEKI 544 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I +S + ++L+NLF A P+ V I V + + IF + NGN Sbjct: 545 IMVSMDGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGNGIPEKILPY 604 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + V + K Sbjct: 605 IFDRFFTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKFNIPK 659 >gi|153954881|ref|YP_001395646.1| sensory transduction histidine kinase [Clostridium kluyveri DSM 555] gi|146347739|gb|EDK34275.1| Predicted sensory transduction histidine kinase [Clostridium kluyveri DSM 555] Length = 663 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 74/235 (31%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55 + + L + L + HD+ SP+ I S+ + + + +++ I Sbjct: 419 QEASKVQIERERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLIGIYN 478 Query: 56 SSMSAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + I ++ + + +++ + + RV+V+ + Sbjct: 479 DTEWLIRLVENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYHRVKVNIPEKI 538 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I +S + ++L+NLF A P+ V I V + + IF + NGN Sbjct: 539 IMVSMDGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGNGIPEKILPY 598 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + ++ + V + K Sbjct: 599 IFDRFFTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKFNIPK 653 >gi|95930779|ref|ZP_01313511.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133127|gb|EAT14794.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 385 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 A++I + + S + H++ +P+ A+ E + E + E +Q+I S Sbjct: 150 AQDISERKKLDQMKDEMISAVSHEMSTPLTAMLGFCEFMLENEVPAEQQQEFLQIIFKES 209 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115 + + + + ++ + + K+D + Sbjct: 210 QRLKGLIDNLLSLQRMRAGMGCVNFTWLNLSMLFAELCQLFGKYSATHTIKVDCPTDFPL 269 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + NL A P GG VT++ + + I S+K G + Sbjct: 270 VSADQLCLQQAMENLISNAIKYSPNGGTVTVTARQDDGQVIVSVKDEGMGISPVVQEQIF 329 Query: 168 VDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E + L Sbjct: 330 DRFFRIDTKNGQKVGGTGLGLPLVKEIISLHHGEVWVESEEGQGSTFCFSLP 381 >gi|229057065|ref|ZP_04196457.1| hypothetical protein bcere0026_11810 [Bacillus cereus AH603] gi|228720206|gb|EEL71785.1| hypothetical protein bcere0026_11810 [Bacillus cereus AH603] Length = 354 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ A L+LL ++ +L Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDTCSEKERKLYIDIAINGIE 186 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + L L I + ++ S + Sbjct: 187 QANHVLTDYLTFAKPSIEKEQQLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+F ++P GG + +++ +K G E+ ++ Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 305 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 349 >gi|118579571|ref|YP_900821.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502281|gb|ABK98763.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 645 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 69/232 (29%), Gaps = 28/232 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAI 61 M+ V L + HD + + AI LL DE ++ ++ Sbjct: 274 QKMEAVGQLAGGVAHDFNNILTAIIGYGNLLQMKVGGDETLEKYVNQILYSAERAATLTN 333 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKIL 119 L F R + V + E+++ + D ++V + S + ++L Sbjct: 334 SLLAFSRKHIIHVREVSLNEIIARAEKLLSRLVPEDIELRVLVGPDCSILADSTQMEQVL 393 Query: 120 LNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGNLARFPEKF 164 +NL A S+P GG++ + + + NG Sbjct: 394 MNLVTNARDSMPDGGRLTISTEPAFLDREFVHRQGYGEPGSFVKVTFSDNGVGMDEG-IR 452 Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + +++ + + L Sbjct: 453 ERIFEPFFTTKETGKGTGLGLAIVYGIVKQHEGYIDVSSQPGRGTTFTIYLP 504 >gi|308271994|emb|CBX28602.1| hypothetical protein N47_G39260 [uncultured Desulfobacterium sp.] Length = 503 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + S + +L L + + H+I +P+ I L+ E D +Q Sbjct: 261 LQDAQSQLDQSEKMASLGRLAAGVAHEINNPLTGILMYGNLMKEKMEPDHPLQTNITYIL 320 Query: 58 ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTG 106 +K + +G+ + + + I Sbjct: 321 EDAERCREIVKNLLAYSRQSGTSQERFSMNVMVEESLRLIRDQSLFMNLTTKKELSDECM 380 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++++NL M A ++ G + + + + G ++ Sbjct: 381 MVKADRNKMCQVVINLVMNAIDAMDPNGTLTLKTYRSNDQKRACLEITDTGFGIPDEDRL 440 Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + +NK ++ + L Sbjct: 441 -RIFDPFFTTKDPGKGTGLGLSTAYGIIKDNKGDIIIKETGPEGTTFLVELP 491 >gi|303328342|ref|ZP_07358780.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3] gi|302861672|gb|EFL84608.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3] Length = 505 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 64/238 (26%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLI 53 M +N + L + + + I H+I +P+G I +S ELL + +++ Sbjct: 257 MHRNRLLENELHSNEKLAGMGRVIASIAHEIRNPLGIIRSSAELLQRRTDKADSGTARIL 316 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIG----------LGDIEQVIEDFIAVDKRVQVS 103 ++ + + Y + + V + Sbjct: 317 GAIYDESVRLSQTVNDFLDYARPRQPRQDLVDVNLVLDQVMAFLEGELGRHGVAVERETE 376 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGN 156 + N+ + ++ G + + +G Sbjct: 377 AGLFVHGDKDLLYRAFYNILINGQQAMDGPGIVRIRGALEHPAQESGPGRVRLEFLDSGP 436 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P + ++D + + V + + ++ E + ++ LL Sbjct: 437 G-FDPAVLSSLLDPFFTTKDGGTGLGLPIVQSIITSHGGQIELENGPEGGALVRVLLP 493 >gi|326775398|ref|ZP_08234663.1| integral membrane sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326655731|gb|EGE40577.1| integral membrane sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 697 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 24/234 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLS 56 L + S + H++ +P+ I LE + + + ++ L Sbjct: 459 SAHRARLEEQRKA--MVSDVAHELRTPLSNIRGWLEAAQDGLADPDPAFVSSLLEEAVLL 516 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEK 108 G + ++ + + Sbjct: 517 QHIIDDLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPAL 576 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE--- 162 + + NL A P GG+VT+ + + G+ + Sbjct: 577 RADPVRLRQAVSNLVSNAVRHTPEGGRVTLRAYACEEEAGTVAVEVADTGSGIPAEDLPH 636 Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V L + + + L Sbjct: 637 VFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVVGEGSTFVLRLP 690 >gi|229527362|ref|ZP_04416754.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae 12129(1)] gi|229334994|gb|EEO00479.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae 12129(1)] gi|327485183|gb|AEA79590.1| Osmolarity sensory histidine kinase EnvZ [Vibrio cholerae LMA3894-4] Length = 438 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] Length = 675 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 72/234 (30%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL ++ + + + + Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 344 Query: 62 I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + ++ +G V I + + + + +A K++ + Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYPPVP 404 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG + + VQ S + +++ G P Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGLVATVRDTGIGIEPTFLPHV 464 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 F + + + L + R+ + ++ L Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASNGANLGTTMAVTLP 518 >gi|108758491|ref|YP_632154.1| sensory box sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108462371|gb|ABF87556.1| sensory box sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 700 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 28/237 (11%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------------DEVGIEDE 48 + S L A+ L + + H+I +P+ + ++L L +E+ Sbjct: 446 QAQLVVSDRLAAVGTLAAGVAHEINNPLAFVLSNLSFLAGELHALAPELPSGRMAELEEV 505 Query: 49 VMQLIRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + F R +V+ L + + + ++ + Sbjct: 506 LREATDGAHRVRQIVRDLRTFSRGDDEVATAVNVQAVLESAITLARSELKLRAQLVRDYC 565 Query: 106 GEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLAR 159 ++ LNL + A ++P G V+ + + I ++ G Sbjct: 566 EVPLVEGNEGRFGQVFLNLLINAAQAIPMGQTEQHEVRLSLRSAGDRVIIEVRDTGVGM- 624 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + + E + L Sbjct: 625 PPEVRARIFDPFFTTKPVGEGTGLGLSICHGIVTGFGGDISVESEEGRGSTFRVSLP 681 >gi|163939246|ref|YP_001644130.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163861443|gb|ABY42502.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 402 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ A L+LL ++ +L Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDTCSEKERKLYIDIAINGIE 234 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + L L I + ++ S + Sbjct: 235 QANHVLTDYLTFAKPSIEKEQQLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 294 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+F ++P GG + +++ +K G E+ ++ Sbjct: 295 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 353 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 354 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 397 >gi|163941246|ref|YP_001646130.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163863443|gb|ABY44502.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 510 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 334 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 I + + + + + ++ I + + + Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDI 394 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 S + ++L+N+ A ++P GG + I +N + G E+ ++ Sbjct: 395 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGI-PEERMARL 453 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 500 >gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata D2] gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata D2] Length = 1106 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 56/215 (26%), Gaps = 21/215 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H+I +P+ AI ++L + ++ E ++ + S SA L + Sbjct: 544 NMSHEIRTPMNAIIGFSDILLDTALDKEQLKHLSTISRSAKSLLHLLNDVLDSAKLDKGK 603 Query: 81 IGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFM 124 + L + + + ++ + + +IL NL Sbjct: 604 LELENRVFSLTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILTNLIG 663 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSH 179 A +G ++ F + G + D ++ Sbjct: 664 NAVKFTAQGKVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAFSQADASMSRKYGGT 723 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E + L Sbjct: 724 GLGTTISKQLVELMGGEIEVESELGKGSIFRFTLP 758 >gi|262164925|ref|ZP_06032663.1| sensor protein TorS [Vibrio mimicus VM223] gi|262027305|gb|EEY45972.1| sensor protein TorS [Vibrio mimicus VM223] Length = 968 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 56/233 (24%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL E + +++ + S Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L NL + + IS F+++ +G + Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPEGQGIRFAVEDSGIGIAEQDQA 636 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + L L S +L Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFILP 689 >gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus DSM 14838] gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus DSM 14838] Length = 1039 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI +L E+E + + + + Sbjct: 664 LTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNN 723 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWT 105 + + L+ G+++ ++ +++ + + V+ + Sbjct: 724 TLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKTDAVKLEFVEPAGP 783 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++++NL A +G +NE F + G +K Sbjct: 784 CMAYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMR-ENELYFYVADTGCGI-PKDKQQ 841 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V S + L R+ E + L Sbjct: 842 NIFGRFVKLNSFAQGTGLGLSICKTLMDHMGGRIGVESEEGKGSTFWFTLP 892 >gi|218778561|ref|YP_002429879.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759945|gb|ACL02411.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1032 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + M+ +A L S I HD + + I E+L E ++ I +S Sbjct: 649 EEKIQQAQKMESIANLASGIAHDFNNILTPILGLAEMLTEDLRTGSPEQIKVKEIFKASE 708 Query: 59 SAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDL 111 A + + + V L D+ + I + +Q + Sbjct: 709 RARDLISQILAFGRKSEEKLGPVKFQYILDDVLTLCRSSIPKNIEIQSAIQKNCGAIWAN 768 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----------------KNENIFSLKING 155 + + +I +NL A+ ++ I V + +FS+ G Sbjct: 769 ATQLHQIAMNLITNAYHAMENMDGAKIEVSLREVDRGSDDHGSSEILGDRQLLFSVSDTG 828 Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I + + + V + E + E Sbjct: 829 AGI-PPEIMDKIFEPYFTTKKQGKGTGLGLAVVYGILKEYGGDIRIESDVGKGSTFHLYF 887 Query: 214 E 214 Sbjct: 888 P 888 >gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 614 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 26/238 (10%) Query: 3 KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIED----------- 47 + + L + + + H++ +P+ I ELL + + Sbjct: 366 EQLARALEGARAATVAKSRFLASVSHELRTPLNGIIGFSELLYDAKLGHLSGEQIEVMGD 425 Query: 48 ------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 ++QLI + + M + + + D+ + + + + + Sbjct: 426 ILTSARHLLQLINDILDLSKVEAGRMEFRPERSRLQPLVFEVRDVIRPLAERKNLVLATE 485 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF 160 V ++L N A P GG VT+ + ++ + ++ G Sbjct: 486 VPEDLVAHLDPGRFRQVLYNYLSNAVKFTPAGGSVTVRIARERQLWFQLEVEDTGIGIAA 545 Query: 161 PEK---FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + D + + + V SALL Sbjct: 546 EEIPRLFQEFSQLPNSRKADQGTGLGLALTRHIVEAQGGSVTVRSELGRGSVFSALLP 603 >gi|328952161|ref|YP_004369495.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452485|gb|AEB08314.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 978 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 67/243 (27%), Gaps = 31/243 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53 M K + M+ + L I HD + + A+ E + +D V++ Sbjct: 589 MEKQLHQA-QKMEAIGTLAGGIAHDFNNVLMAVMAYTEDAMQDVPDDSVLRYKLGRALQS 647 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 R ++ L F R + + + +++ + +Q + Sbjct: 648 GRRAADLVKQILTFSRPQKHERQPIRLSPIVTESLKMLRATLPSTIIIQQEVDHNTDAIL 707 Query: 113 RE---RAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKI 153 + ++LLNL + ++ + + ++K Sbjct: 708 GDATQMHQVLLNLCTNSAHAMREKGGILKIALKNTHLDEAAAAKWQNAAAGSYVQLTVKD 767 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG + +I + + + + V + + + E Sbjct: 768 NGVGM-DRQIQERIFEPFYTTKKPGEGTGMGLSVVHGIVKAHGGDISLESSPGQGTTFHL 826 Query: 212 LLE 214 L Sbjct: 827 LFP 829 >gi|229161531|ref|ZP_04289511.1| hypothetical protein bcere0009_23170 [Bacillus cereus R309803] gi|228621776|gb|EEK78622.1| hypothetical protein bcere0009_23170 [Bacillus cereus R309803] Length = 435 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 11/223 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 ++ + M++V+ L + I H++ +P+ + +LL + IE + +L Sbjct: 208 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDKYIEHILEELN 267 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 R + + I ++ + ++ I ++ Sbjct: 268 RAQIIIDDYLTFAKPASEKLDHISVEQELNRVINMILPLCNMNTIHITKDFSEATIVGNK 327 Query: 114 ERAKIL-LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL A ++P GG + IS + N+ I ++ +G E+ + + Sbjct: 328 QHFQQCVLNLIKNAIEAMPDGGILNISSSINNNKVIIRIEDSGVGM-SQEQINRFGEPYF 386 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + L K Sbjct: 387 STKTKGTGLGTMVAVKIIETMQGTLKIRSVITKGTTLIITFPK 429 >gi|220931317|ref|YP_002508225.1| integral membrane sensor signal transduction histidine kinase [Halothermothrix orenii H 168] gi|219992627|gb|ACL69230.1| integral membrane sensor signal transduction histidine kinase [Halothermothrix orenii H 168] Length = 331 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 63/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + S I HDI +P+ +I E L ++ ++ +++ + + + + Sbjct: 111 VMSNISHDIRTPLTSILGYAEALKDGLAEDDEEREKYREIMVMKARRLKKLVDKLFFLAR 170 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SWTGEKIDLSRERAKILL 120 + L + +D ++ +++ Sbjct: 171 LEAGEEELDFKVYDLAEVTRECIIDFLPRINKEDLELKTEIPEQECLIYADHLALERMID 230 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVE--ST 175 NL + GG + + + + + + + G P F ++ G+ Sbjct: 231 NLISNSINYGKEGGIIGVKLFRQEQKYVLQVWDKGPGITEDKLPHIFNRLYVGDKSVERQ 290 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + L ++ R+ + + S Sbjct: 291 ISGSGLGLAITRRLIEKHNGRITVDSKPYEKTIFSLHFP 329 >gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 666 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 57/241 (23%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 M + + + + ++ + + H+I +P+ I L+ + + + + Sbjct: 270 MLREAKESAEAANAAKSIFLANMSHEIRTPMNGIMGMAHLVLNTDLSPQQRDYVEKIHST 329 Query: 60 AIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVI------------EDFIAVDKRVQVS 103 + + +D + ++ + Sbjct: 330 CESLLDIINDLLDFSKIEANHMDLEALPFQPVNEMEAVLALLRPRTQHKNCVLESHIDPD 389 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLAR 159 + + +ILLNL A RG + + + G Sbjct: 390 IPQTLVGDALRLRQILLNLGGNAIKFSERGVVRVDLQLLHREGNSVTLACLVSDEGIGM- 448 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ +I + + L R+ + V L Sbjct: 449 SEEEQERIFTPFSQADTSITRRFGGTGLGLALCRRLVELMGGRIHVQSAPGKGSVFRVEL 508 Query: 214 E 214 Sbjct: 509 P 509 >gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 568 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + S + H+I +P+ AI E+L E I+ E LI + Sbjct: 153 LKSALNMVEQANQVKNEFLSNMSHEIRTPMTAIIGYSEVLKESVIQAEQHDLIETIQRNG 212 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSW 104 L+ + + L + + S Sbjct: 213 DHLLQVINDILDISKIELGQCELKTEACFPLQIVQEVIALHRPKAVQKGLRLLTNIHESI 272 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 ++L NL A T + + + F++ G Sbjct: 273 PETIQSDPIRLKQVLNNLVSNAVKFTNNGFVRIEIRTFNRSNFERLLQFNVADTGIGI-S 331 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I D + + L +L + + + S L Sbjct: 332 KDNLKRIFDPFTQADSSMSRPYSGTGLGLTLSQKLVQLLGGKLSVQSTVNQGSIFSVTL 390 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 72/245 (29%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49 + + ++ +L + + H++ +P+ I E L E + Sbjct: 833 ERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSESLLEELRGPLNERQRAS 892 Query: 50 MQLIRLSSMSAIIRLKF-MRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IAVD 97 +QLI S + + + +A G ++ + + + V E Sbjct: 893 IQLIETSGRHLLTLINDVLDVAKIEAGRMELVKEVVAVSDVCESSLVLIKEQAAKKQIRL 952 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKING 155 V + + R +IL+NL A P ++ ++ ++ F++ G Sbjct: 953 HCVIDAPHTRFLADPRRLKQILVNLLSNAVKFTPEGGSVELRVTTDTAQGTIAFAVSDTG 1012 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + ++ V + + V L + + V Sbjct: 1013 IGIAPDQLP-RLFQPFVQLDSSLTREHEGSGLGLALVRRLVDLHGGSVSVTSTPGSGSVF 1071 Query: 210 SALLE 214 + L Sbjct: 1072 TVTLP 1076 >gi|167621903|ref|YP_001676688.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351644|gb|ABZ74374.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 579 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ N +S + L + H++ +P+ + L ++ + + + S Sbjct: 199 AQTEAANAASQAKSSFLA-MMSHELRTPMNGVLGMAHALTLSKLDSHQVSHLDMLLRSGQ 257 Query: 62 IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105 + + + D +E + D + V S Sbjct: 258 GLMTILNDLLDISKIEAGKLELEIIPFDLSELGRQVEDLWRDAAHIKGVSLVCEVAFSGP 317 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L+NL A +G + ++ G ++ Sbjct: 318 HWVSGDPTRLRQVLINLVSNALKFTSQGEVRLSIWRSEDGLCQIAVTDTGPGIPVNQQAL 377 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L R+ + + + L Sbjct: 378 LFQAFSQADASITRKFGGTGLGLAICKQLVSLMDGRIDLDSREGVGSTFTVSLP 431 >gi|227432425|ref|ZP_03914414.1| signal transduction histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351828|gb|EEJ42065.1| signal transduction histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 446 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 71/231 (30%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 M ++ L + A + H+ +P+ AI +E L + + +Q++ Sbjct: 215 MLYDLTEVLKLERMQADFLANASHEFKTPLTAITGFVETLQGDAGADEETRTQFLQIVAD 274 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + VD I + + + D V ++ Sbjct: 275 EAKRLSALVSDILSLSRMQHKVDEKISNLQISAIVEQQLEKIDTKTVTVHNDIAPDFSVS 334 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++ + + I+ NL + G+V IS + + +G + F + Sbjct: 335 GIASDVSTIVQNLLTNSVKYNKTDGEVWISAYKDTQQWQIKVSDSGIGIPLNQQSRIFER 394 Query: 167 IVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + V + +++ + + +S +L Sbjct: 395 FYRGDESRQRKIASGTGLGLAIVNEIVNQHNGGINIKSQVGVGTTISVILP 445 >gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 486 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 +N+ L + + H+I +P+ + E L + E++Q+I S Sbjct: 242 RNVTEEHKLEKLRRDFVANVSHEIRTPLSMLQGYSEALLDDIVASPEERKELVQVIYDES 301 Query: 58 MSAIIRLKFMRLAFGY--------TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGE- 107 + + D + + + + Sbjct: 302 LRMGRLVNDFLDMARMEAGHVELSLQEFDLRNVIRRVHRKFQVYAKERNVSLNADLPDTP 361 Query: 108 ---KIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 ++L NL A P + ++ + G Sbjct: 362 LAVHEADEDRIEQVLTNLMDNALRHTPAGKSIKIAGQTATINNLKFVKLIVADEGQGIPS 421 Query: 161 PE---KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + V + ++ R+ + + + LL Sbjct: 422 EDVPYIFERFYKADKARKRGASGGTGLGLAIVKNIITQHNGRIEVDSVLGKGTTFTLLLP 481 >gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168] gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 589 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + E+ Q+I Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410 Query: 56 SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S+ + + + + V ++ Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISL 470 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E + + ++ NL A GG V+ISV K+ +K +G+ + Sbjct: 471 TEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + D S + Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIP 586 >gi|148265388|ref|YP_001232094.1| histidine kinase [Geobacter uraniireducens Rf4] gi|146398888|gb|ABQ27521.1| histidine kinase [Geobacter uraniireducens Rf4] Length = 249 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 71/222 (31%), Gaps = 19/222 (8%) Query: 11 SMDLV--ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 + + +L + + H++ SP+ I ++ ++ L E + + V +++ + A F Sbjct: 26 NEKMAELGMLSTGMVHELNSPLSVIVSAAQMILREEDLPEFVKEMVERIGLEAQRLSYFT 85 Query: 68 RLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 R + +++ + + + V ++ + Sbjct: 86 RSLLSFARKEEAVEAEADVNLVLQEVMAFLKYEAQKRSISVIEEKDYGLPPIAADGNRLK 145 Query: 117 KILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ +NL M A ++ GG + ++ D + G E I + + Sbjct: 146 QVFINLIMNALQAMEEGGTLLLKTALTDDGRFLEAQVADTGRGI-AAEAVEHIFEPFYTT 204 Query: 175 TI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + R+ + I L Sbjct: 205 KVAGEGTGLGLFISRNIVERLGGRIQVKSIVGEGTTFVLLFP 246 >gi|134299132|ref|YP_001112628.1| nitrogen-specific signal transduction histidine kinase NtrB [Desulfotomaculum reducens MI-1] gi|134051832|gb|ABO49803.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 509 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 68/219 (31%), Gaps = 12/219 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + +++V + + I H++ +P+ + L++L L Sbjct: 288 EEEMVRFDRLNMVGEMAAGISHEVRNPMTTVRGFLQMLQGKDDCSRYKDYFTLMIQELDR 347 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLS 112 + + S + +I ++ +V+ + + + S Sbjct: 348 ANSIITEFLSIGRNTPSNLEKQNINFIVNSLKPLLQADAFGQGKYVQVETNKVPDLLLDS 407 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +E +I+LNL ++ GG++ I + + +++ G E ++ Sbjct: 408 KEIRQIILNLCRNGLEAMTSGGRLIIRTYLENRKVVLTVQDEGEGI-RSEVMEKLGTPFF 466 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + +A + + + + Sbjct: 467 TTKANGTGLGLSICYSIAARHNAVISIDTSAN-GTTFYV 504 >gi|118579570|ref|YP_900820.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502280|gb|ABK98762.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 983 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/244 (9%), Positives = 67/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 KN+ L S + A+ L + HD + + I E+L + ++ + Sbjct: 598 RKNLEGQLYQSQKMEAIGQLAGGVAHDFNNILTVIIGYAEILLLSMEREHALRYHVEQVL 657 Query: 55 LSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ A + + GL + + + K + V Sbjct: 658 TAAGRAAELTAGLLAFSRKQLLHMKQLDLGEVARGLRKMLRRLIPEDIDFKTIIVEKELT 717 Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 + + ++++NL A ++P+ + ++ Sbjct: 718 ILADKGQIEQVIMNLVTNAKDAMPKGGSLTLEIAPATMDEQFLQQHGFGEPGGYACITIA 777 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ E ++ + + + + + ++ + + S Sbjct: 778 DTGHGM-DEETRKRLFEPFFTTKEAGKGTGLGTAIIYGIVKQHNGFISVDSEPGRGSTFS 836 Query: 211 ALLE 214 L Sbjct: 837 IYLP 840 >gi|307132911|ref|YP_003884927.1| sensory histidine kinase in two-component regulatory system with OmpR [Dickeya dadantii 3937] gi|306530440|gb|ADN00371.1| sensory histidine kinase in two-component regulatory system with OmpR [Dickeya dadantii 3937] Length = 467 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 + S + L+A LL + + HD+ +P+ I + E++ + E + Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGQEDEYLAESINKDIEE 276 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ D LG++ + + Sbjct: 277 CNAIIEQFIDYLRTGQEMQMEVADLNAILGEVVASESGYEREIESELAWGELPMKVSPLS 336 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171 + + NL + A +V+ + F ++ +G F V G+ Sbjct: 337 IKRAVANLVVNAARYGNGWIRVSSGREL--QRAWFQVEDDGPGIDPSQLTHLFQPFVRGD 394 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + + A L Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHNGSLDVGASERGGLRVRAYLP 437 >gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 754 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 +AK S + S + H++ +P+ +I ++ E + + M I Sbjct: 514 LAKANEELKSLDKMKDEFLSNVSHELKTPLTSIKGYSNIIYEETLGKLNDEQKKTMNTIV 573 Query: 55 LSSMSAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWT 105 +S + + V + D + I + + + Sbjct: 574 RNSERLRRLVDSLIYMSMSQAGKIEYSFEPVQISKVIDDAIEDTNFEINKKGLILNKNVS 633 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 ++ ++AK+ L A GG++T+ + + G Sbjct: 634 ENIPQINGDKAKLTDMLTNLLDNATKFTSSGGEITVEAFEEDEHIHIKVTDTGVGIPEDL 693 Query: 161 -PEKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + Y L+ + + + I+ + L Sbjct: 694 IPYLFQRFYQIDSSIRRKYGGTGLGLYICKLIVDAHYGNIWIDSIEGKGTTVHVKLP 750 >gi|296111035|ref|YP_003621416.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU 11154] gi|295832566|gb|ADG40447.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU 11154] Length = 619 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 65/241 (26%), Gaps = 33/241 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58 + S + S + H++ +P+ ++ + ++ L + + + +++ + Sbjct: 365 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAINDPDMAQNFLGVVQDETQ 422 Query: 59 SAIIRLKFM---------------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 I + + L D +I + Sbjct: 423 RMIRMINDLLALSRLDQGTMEVKLEVINLNSLFNFVLNRFDMIIENDAKNADTPNKSYNI 482 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +R + + ++L N+ A P GG +T + +K I S+ G Sbjct: 483 QREFTNEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 542 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + +++ Sbjct: 543 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 602 Query: 213 L 213 L Sbjct: 603 L 603 >gi|188997651|ref|YP_001931902.1| integral membrane sensor signal transduction histidine kinase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932718|gb|ACD67348.1| integral membrane sensor signal transduction histidine kinase [Sulfurihydrogenibium sp. YO3AOP1] Length = 671 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 64/231 (27%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV---------------GIED 47 + S L L + I H+I +P+ I+ + ++ + Sbjct: 436 ENQIIQSEKLAVIGRLAAGISHEIKNPLAIINQNAFMVKRRIQKLCSNVDNIDNILESIE 495 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWT 105 + + + ++ L F + + V+ + + ++ Sbjct: 496 RIERNVIRATDIIERLLNFSKPYYTKAEKVNLREVVEEAIKLAILQAQKSNISFSKKLVD 555 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEK 163 ++ +NL + A ++ GK+TI + +K G + Sbjct: 556 AYVKGDKNALIQLFINLILNAIEAIENKGKITIKITPLKRTENVRVVIKDTGKGI-SEDI 614 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + ++ ++L + Sbjct: 615 LDKIFEPFFTTKEKGTGLGLAVSYRILQDHGGKILVNSKEGEGTEFILTFP 665 >gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 596 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF------ 66 S + H++ +P+ +I E L + + D +++I S + Sbjct: 367 FVSSVSHELRTPLTSIRGYAETLLDGAMNDPEHAQAFLRIILQESEQLTALVNDVLDLSK 426 Query: 67 --MRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G VD + +E + F + + ++S + + A + + + Sbjct: 427 IESGRIEYTYGPVDLSRVVEHSMEMLRPAFEKKEVKFELSIPPGLPPVQADEAYLGIVIR 486 Query: 124 MVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 + ++ KV + + F ++ NG+ + +I + Sbjct: 487 NLLDNAVKYVDAGTGKVRFRAFRTGDSVQFDVEDNGSGIAHQDL-ERIFERFYRVDKARS 545 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K + + S L Sbjct: 546 RQLGGTGLGLSIVKHIVLSHKGDIKVRSRLNRGSTFSVTLP 586 >gi|330001427|ref|ZP_08304008.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] gi|328537669|gb|EGF63882.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] Length = 424 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L M V L + HD + + I SLEL++ + + ++ Sbjct: 50 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 109 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + +V L ++ +++ + +++ + Sbjct: 110 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 169 Query: 115 RAKILLNLFM---VAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ L A ++ +VT S ++ + +G+ Sbjct: 170 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 228 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 229 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 284 >gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] Length = 1364 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAALDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKLKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVVTLEK 872 >gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 673 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 277 LDSERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKGLSVI 336 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M + L E + V + Sbjct: 337 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALSTQELAADGKDQVLELHV 396 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A P G++ ++++ + S++ +G+ Sbjct: 397 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSVRDSGDGIAAE 456 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 457 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGQGATFTVRLP 515 >gi|312891789|ref|ZP_07751296.1| PAS/PAC sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295731|gb|EFQ72893.1| PAS/PAC sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 508 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 19/211 (9%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLSSMSAIIRLKFMRLAFGYTG 75 H++ +P+ +I +L+LL ++ Q + + + + ++ +G Sbjct: 295 SHEMKTPLTSIKGNLQLLQRKAQQNNDTQYLSGFETASKSIARLEKLIYDLLDVSKIQSG 354 Query: 76 SVDSLIGLGDIEQVIED--------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 V+ + + +Q+I + ++ S E ++LLNL A Sbjct: 355 KVELIFSKFNFQQLIIESVNGVQATTQTHKLVMKGSSDIEVTADFGRLEQVLLNLLNNAV 414 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNV-ESTIDSHDIQF 183 P G +V + S+ G + F + + I Sbjct: 415 KYSPTGKEVIVHTCILPEYVKVSITDTGVGIHERDHKRIFERFYRADQISEKFPGVGIGL 474 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y + E++ L E + V S + Sbjct: 475 YVSNEIIKEHRGTLWVESQEGKGAVFSFTIP 505 >gi|296273569|ref|YP_003656200.1| integral membrane sensor signal transduction histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296097743|gb|ADG93693.1| integral membrane sensor signal transduction histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 368 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 ++ N+ + + + S + H+I +P+ AI ELL + +E + + Sbjct: 129 LSSNVNKMVEELSGMDYMRKDFMSNVSHEIKTPVTAITGFAELLLDSPLEIQKQKEYLEL 188 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 RL + +D+ + + + D + +S D + Sbjct: 189 IHQESRRLSLLCEDMLQMSRLDNQQIISKKDMIRVDEQIRRAVIVLSQKWSDRDQKFDLN 248 Query: 115 ------------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 + +NL A + I + NE I +K G + Sbjct: 249 LCDVVIESDKSLLMHVWMNLIDNAMKYSSLNSTIYIDEYVNGNELIVKIKDEGIGIKSEK 308 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F + G+ + V + + E ++ + Sbjct: 309 IEKIFDKFYQGDESHKKQGSGLGLSIVKRILELLGATIHYESQENIGTTVVV 360 >gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM 17393] gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM 17393] Length = 979 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 19/227 (8%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI 61 L S L + + + H+I +P+ AI LL ++ +E + +I ++ + Sbjct: 608 REKALESERLKSAFLANMSHEIRTPLNAIVGFSSLLTATEDEQEREEFISIIENNNQLLL 667 Query: 62 IRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + V + + + Sbjct: 668 QLVSDILDLSKIEANTLEFNYRDVDLNGLAKDVESTVRRRLKPNVVLEFIPGAAQCHVQT 727 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++L+NL + A G + E F +K G E +I + Sbjct: 728 EKNRLSQVLINLLVNATKFTQTGSIT-FGYEIRGKELYFYVKDTGMGI-SQEDQNKIFER 785 Query: 171 NV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 ++ + + + K R+ E + Sbjct: 786 FTKVDTFTQGTGLGLSICKNIIEKMKGRIGVESEGKGKGSTFWFTVP 832 >gi|254285902|ref|ZP_04960864.1| osmolarity sensor protein EnvZ [Vibrio cholerae AM-19226] gi|150424084|gb|EDN16023.1| osmolarity sensor protein EnvZ [Vibrio cholerae AM-19226] Length = 438 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 65/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124 +++ L + E V ++ + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAELAPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|317129750|ref|YP_004096032.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315474698|gb|ADU31301.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 457 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIR 54 +AK I +S+ L S + H++ +P+ + + LE + + E + Sbjct: 222 LAKGINELAASLKEGERLRKQFTSDLAHELRTPLTTLRSQLESIQDGIFYPTKERLDQCH 281 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVS 103 M + + M +++ L D Q + ++ +++V Sbjct: 282 HELMRLVRLVNEMEELHAAENPRIRLNLEQHNAKETIHSLYDRFQPMFKQKGINLKIKVD 341 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + +I+ NL A G+V + V+ S+K NG E Sbjct: 342 EDIQIRADRDRFIQIMTNLLNNALKFTESSGEVQVLVEQIGEGVYISVKDNGIGMTEEEL 401 Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 F + G I V L ++ + + ++ Sbjct: 402 NHIFERFYRGEKSRNRKTGGLGIGLSIVKALMDAHRGEIYVDSKKGRGTTVTIF 455 >gi|269967966|ref|ZP_06182005.1| sensor histidine kinase [Vibrio alginolyticus 40B] gi|269827402|gb|EEZ81697.1| sensor histidine kinase [Vibrio alginolyticus 40B] Length = 811 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 26/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +S + + + H+I +P+ + + ++L + + DE + +R S Sbjct: 344 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLRTLYDSG 403 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105 + + Y+ + + IE I K V + Sbjct: 404 DHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSHLPT 463 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161 + ++L NL A RG + + I +K G Sbjct: 464 GRWYNNDKARLRQVLFNLLNNAVKFTDRGIVEVELAEQSSKAGTKLILKVKDTGIGI-SK 522 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + V +A +++ E +D + + Sbjct: 523 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVEI 580 >gi|114767141|ref|ZP_01446021.1| C4-dicarboxylate transport sensor protein DctB, putative [Pelagibaca bermudensis HTCC2601] gi|114540703|gb|EAU43771.1| C4-dicarboxylate transport sensor protein DctB, putative [Roseovarius sp. HTCC2601] Length = 567 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 +A S L AL + + + H++ P+ A+ L LL + Sbjct: 328 LASAEQTLEQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRPDEAMTAFHR 387 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104 + LI + R VD L ++E + + ++ Sbjct: 388 IDDLIERMGAITRQLKSYARKGQEQLSPVDMAEALASSLSMMEPQLKARRVRISKILPDE 447 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163 + ++L+NL A + + + + S S++ NG+ E Sbjct: 448 PVRVMGDRMRIEQVLVNLLRNAIDATKSVAQPELEIILASGETATLSVRDNGHGI---ED 504 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + + + RL D V L Sbjct: 505 MDALFEPFYTTKQPGDGTGLGLAISSGIVADLGGRLTARNGVDGGAVFEMQLP 557 >gi|94264421|ref|ZP_01288211.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455178|gb|EAT05396.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 439 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 70/240 (29%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 + + + S + A+ L + + H+I + + +++++L ++ Sbjct: 186 LRETQAQLIQSEKMAAMGQLVAGLAHEINNATNIVLSAVQMLRHHLRQEPPKGLRSNDEA 245 Query: 50 ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRV 100 ++++ + +K + + + L + + F A + Sbjct: 246 SSLLKMVEDGGLRTARIVKDLMTFARPAAVDNCRLLLLNQGLRSTIGLLEYHFAAEGMEL 305 Query: 101 QVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 V + L ++ LNL + A ++ G V + ++ +G Sbjct: 306 LVELDSRQPYLHGNGDELNQVWLNLILNAIQAVDGAGTVQVGTGHDAERVYVTVSDSGPG 365 Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + + + + + V L + Sbjct: 366 IDPT-IRADIFNPFFTTKRPGQGTGLGLTVSYQVINSHGGSIELLDSPEGGAVFRVTLPR 424 >gi|84516567|ref|ZP_01003926.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53] gi|84509603|gb|EAQ06061.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53] Length = 720 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 18/216 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + + + H+I +P+ I + +LL ++ + + S + L + Y+ Sbjct: 225 MFLATMSHEIRTPLNGIIGAADLLRTEDLDPAQSRRVLTIWRSGHVLLDIINDILDYSNL 284 Query: 77 V----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123 SL + + + D + I + + +ILLNL Sbjct: 285 DANGVTFNNAPVSLPDVAGLVHDVFQARIADAGLSFDIDLPAITIMTDEIRLRQILLNLV 344 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDS 178 A P G + +++ ++ +G + D G+ Sbjct: 345 SNAIKFTPAGSVSVRGMLLAQDGLRIEVQDSGIGIASEDHSKLFRDFSQIEGSESRPFGG 404 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ E V L Sbjct: 405 TGLGLAICRRVVTGMGGRIGVESAIGRGSVFWVELP 440 >gi|226946292|ref|YP_002801365.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ] gi|226721219|gb|ACO80390.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ] Length = 981 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54 S L ++ L + + H+I +PI I + L E +D + + Sbjct: 743 ENKLAHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEHEDDAELGEISSQIIDQTK 802 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + F D + + + V + Sbjct: 803 RVTRIVRSLMSFAHAGSHTQASEAVCLADIAREAIGLLSLNREGTEVSFLNLCDPGHCVV 862 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L+NL A + P GG + + + + ++ G+ ++ D Sbjct: 863 GDPQRLVQVLVNLLSNARDASPPGGVIRVRSEAVEQSIDLIVEDEGSGI-PKAIAGRLFD 921 Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + V + E+ R+ + D + L + Sbjct: 922 PFFTTKDPGKGTGLGLALVYSIVEEHYGRIAVDSPADPERQRGTRIRVTLPR 973 >gi|197124829|ref|YP_002136780.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196174678|gb|ACG75651.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 589 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 + + L A+ L + + H++ +P+ A+ ++L E + E ++ Sbjct: 322 LRSMQAAAEHAERLAAIGRLVAGVVHELNNPLTAVTMYSDVLLERFTARAQDPSDVEKLR 381 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 I+ + + + TG+ + L + R Sbjct: 382 AIKDAGQRIQRLARDLITYARPTGARTEAVDLVPAVEEAGRMAKTALKESGAALVRDGGE 441 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++L L A ++P G +V +++ E + ++ G PE Sbjct: 442 GPYVVEGNRPSLVQVVLALVTNAAQAVPPGAEVRVALSREGGEVVLTVADAGAGM-PPEV 500 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + + ++ L Sbjct: 501 AARAFEPFFTTRAGVGIGLGLPIVQGIVERHGGSVSLSTAAGRGTTVTVRLP 552 >gi|146280453|ref|YP_001170606.1| hypothetical protein PST_0056 [Pseudomonas stutzeri A1501] gi|145568658|gb|ABP77764.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 1012 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + ++I + + L S + H++ +P+ +I +L L+ ++Q++ ++ Sbjct: 768 LVRDITERKRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPTMLQMLTIAH 827 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111 +++ + + V + L + + + + + Sbjct: 828 QNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPL 887 Query: 112 --------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L NL A P GG V++ Q ++ G PE Sbjct: 888 PTLQLIADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQRGAWVRIWVRDQGPGI-APEF 946 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + L R+ + H L Sbjct: 947 HARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELP 1003 >gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 598 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 360 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 415 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVS 103 L R+ G+ + L + + ++ Sbjct: 416 ESLRMGRLVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTAEFRD 475 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E ++L NL A GG V + ++ S + ++ +G+ + Sbjct: 476 ENIEIAFDPDRIEQVLTNLIDNAIRHTEAGGTVRLIIERSGDGVTIHVQDSGSGIPEEDL 535 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K R+ + S L Sbjct: 536 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYLP 591 >gi|323497303|ref|ZP_08102322.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis DSM 21326] gi|323317660|gb|EGA70652.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis DSM 21326] Length = 851 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 62/223 (27%), Gaps = 24/223 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 A +++ H++ +P+ I +LL E + ++ + + S L + ++ Sbjct: 476 ADFLAKMSHELRTPLNGILGVSQLLKHSLDERDALEHVEVLCNSGEHLLAVLNDILDFSK 535 Query: 76 SVDSLIGLGDIEQ----------------VIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + E IE I +D + V+ +IL Sbjct: 536 IEQGKFHIQCAEFRLIELETTVEKIFRPLCIEKGINLDMQSDVTEKMWANSDQVRLNQIL 595 Query: 120 LNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----N 171 NL A G QD + + S+ G + T Sbjct: 596 FNLVSNAIKFTHHGHVTVSLSCYPQDGRYQLRMSVTDTGIGISDAQLATIFEPFIQAEAT 655 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V LA + E D +SA L Sbjct: 656 TTREYGGSGLGLAIVHSLAELMNGEVTIESQLDKGTRISATLP 698 >gi|283853302|ref|ZP_06370551.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571283|gb|EFC19294.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 575 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 59/243 (24%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 A + + + + + + H+I +P+ I ++L+D +++ + + + Sbjct: 183 AAELAIQKEAAEQASRAKTEFLANMSHEIRTPLNGIFGMIQLIDNSNLDEYQKEYLVAAK 242 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQ 101 S + + L + + D + Sbjct: 243 HSCKRLTSLLSHILDLSSIESGKFSLRENTFSLSDIKESVRELFAIESARKKLLFQFNLD 302 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGN 156 + I +IL NL A +F+++ +G Sbjct: 303 LRLPSRVIGDEARVLQILFNLAGNAIKFTESGSVRIDACELPRHDPDACRVLFTIEDSGI 362 Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + G + + V L L + ++ Sbjct: 363 GIPDQLQKEIFDPFVQAEGAYKRRFQGAGLGLAIVRKLVRLLGGTLAVDSVEGEGTTFYL 422 Query: 212 LLE 214 L Sbjct: 423 SLP 425 >gi|228914131|ref|ZP_04077750.1| hypothetical protein bthur0012_13660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845512|gb|EEM90544.1| hypothetical protein bthur0012_13660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 420 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSSSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|227541019|ref|ZP_03971068.1| sensory transduction histidine kinase [Corynebacterium glucuronolyticum ATCC 51866] gi|227183279|gb|EEI64251.1| sensory transduction histidine kinase [Corynebacterium glucuronolyticum ATCC 51866] Length = 461 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 17/229 (7%), Positives = 54/229 (23%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 + ++ + + H++ +P+ ++ EL + + ++ + Sbjct: 228 LQDSLQKSHRQEKEMRQFVGDASHELRTPLTSLKGFAELYKTGATDDADWVLSKIQEEAG 287 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDL 111 + + L +D + + + V S + Sbjct: 288 RMTTLVEDLLALTRAEGNPLDKQKVDLMEVIESLGTSLRVAYPDREITVGESEPLYVLAD 347 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + ++ NL + V++ + I ++ NG + Sbjct: 348 EEKIRRVFTNLMVNGLVHGG--KDVSVLPTADDTDVIIDVRDNGQGMAPEDLEHIFDRFY 405 Query: 172 VE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + L + L + L + Sbjct: 406 RTDESRSRQSGGSGLGLSIAKSLVEAHGGSLSVTSTKGVGSTFTVRLPR 454 >gi|255283554|ref|ZP_05348109.1| two-component sensor histidine kinase [Bryantella formatexigens DSM 14469] gi|255265816|gb|EET59021.1| two-component sensor histidine kinase [Bryantella formatexigens DSM 14469] Length = 357 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 17/208 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H+ +P+ +I LL E + E + + RL + ++++ Sbjct: 148 SHEFKTPLTSISGFAHLLLERDLPKEQREKYLQIIANEADRLTELTKNQLLLSNLETQQL 207 Query: 83 LG-------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHA 128 + + + V V + ++E + + NL A Sbjct: 208 PPDKEPYSLDEQIRTCVICLYPQCQEKNIDVSVELSPMTYYGNQELMQHVWQNLIGNAVK 267 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST---IDSHDIQFYY 185 P G++TIS +++ + S+ G E + Sbjct: 268 YTPEHGRITISSKETDSVYEISVSDTGIGMTEEEIQKIFQKYYQVKKEKSSKGLGLGLPI 327 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALL 213 + R+ I V + L Sbjct: 328 AARIVELYNGRISVSSIPGKGTVFTVFL 355 >gi|218708220|ref|YP_002415841.1| osmolarity sensor protein [Vibrio splendidus LGP32] gi|218321239|emb|CAV17189.1| Osmolarity sensor protein envZ [Vibrio splendidus LGP32] Length = 431 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFMVAHA 128 + + + E V + T + + + NL + A Sbjct: 280 VDRDSFQAVFVDDIAREVSSSEGGYEVQIETDIPETMKPALGNPIAMKRAVSNLVVNALR 339 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 KV+ + +++ NG + F G+ + + Sbjct: 340 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQIGKLFEPFTRGDTARGSEGTGLGLAI 399 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + +++ ++ + + Sbjct: 400 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 428 >gi|163783058|ref|ZP_02178053.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881738|gb|EDP75247.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1] Length = 339 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 72/213 (33%), Gaps = 9/213 (4%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66 + V L I H I +P+ I +LE L++ E EV++ + + +L F Sbjct: 126 QKLSSVGFLALGIAHQINTPLSTILLALEELEDKLGTSEETEVIRSAVNTCKDYVDKLLF 185 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERAKILLNLF 123 + VD + D ++++ + R+ + G + + ++LNL Sbjct: 186 LVKRSSVKDFVDINKAVKDSVELLKMYAKERGVEIRLHLKGDGYILGNESDIRHLVLNLV 245 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDI 181 + A P G V + + +N + ++ G E +I + S + + Sbjct: 246 INALQVSPYGESVEVVSEVGENAWMLRVEDRGPGIEPDELS-KIFIPFYQGKSKSEGAGL 304 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + E + + Sbjct: 305 GLAIVDSILREYGGSINVRSTPGEGSTFELSIP 337 >gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] Length = 565 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 25/216 (11%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----------RLKFMRLAF 71 HD+ +P+G I ++L E +E + + + + Sbjct: 324 AHDLRNPLGVILGYGQMLQEEALEILDEEQLDYLNRIHNASQFTLNLVNNLLDVAKIESG 383 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILLNLFM 124 ++ + I + I + + Q+ + E +++ NL Sbjct: 384 NLALELEQTCLMRTITEAISLNRFLAESKQIQLNFNYDENLPEMTVDASKIQQVINNLIS 443 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------DS 178 A KV I +N+ + S+ G E ++ ++++ S Sbjct: 444 NAIKYSHPQTKVQIHATRKQNDVLISVTDEGQGIPKSEL-DKLFQPFSKTSVKSTAGESS 502 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ E LL Sbjct: 503 TGLGLLICRQIVEAHSGKIWVESEVGVGSTFYVLLP 538 >gi|86146552|ref|ZP_01064874.1| osmolarity sensor protein [Vibrio sp. MED222] gi|85835609|gb|EAQ53745.1| osmolarity sensor protein [Vibrio sp. MED222] Length = 397 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 186 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 245 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFMVAHA 128 + + + E V + T + + + NL + A Sbjct: 246 VDRDSFQAVFVDDIAREVSSSEGGYEVQIETDIPETMKPALGNPIAMKRAVSNLVVNALR 305 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 KV+ + +++ NG + F G+ + + Sbjct: 306 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQIGKLFEPFTRGDTARGSEGTGLGLAI 365 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + +++ ++ + + Sbjct: 366 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 394 >gi|323703412|ref|ZP_08115060.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531593|gb|EGB21484.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 518 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 79/229 (34%), Gaps = 17/229 (7%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52 K + L S L AL L + + H++ +P+G + ++++++ GIE+ + Sbjct: 273 KKRLEEELRRSERLAALGRLVTGVAHELRNPLGIVKATVQVMEGEYKKTVPGIEEYTKVI 332 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----- 107 + + + + V G ++ V+ + ++ ++ E Sbjct: 333 CEQINRGNKVIQELLDFGRPSKPIVRPTDLNGLLDSVLTFTHPMLRQNKIDLNKELAPDL 392 Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ +NL + A ++P GGK+TI ++ G + Sbjct: 393 PLAAIDADRIKQVFVNLILNAIQAMPGGGKLTIKTLAENDKVKVCFSDTGGGINPDDLP- 451 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + H + ++ + L Sbjct: 452 RIFDPFYTTKDEGAGLGLSISYQIIHMHNGKIWVAETSPSGTTICISLP 500 >gi|293610527|ref|ZP_06692827.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826871|gb|EFF85236.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123909|gb|ADY83432.1| two-component sensor [Acinetobacter calcoaceticus PHEA-2] Length = 452 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78 I H++ +P+ + +E D+ I + + + + Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ +A+ K Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445 >gi|258592528|emb|CBE68837.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 781 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 65/244 (26%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 K + L + + A+ L + HD + + I LL + Q+I Sbjct: 390 QKRLEAQLRQAQKMEAIGTLAGGVAHDFNNLLTPILGYSRLLKLRGQPGEDVYQAAQVIE 449 Query: 55 LSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R VD ++ ++ I + E+ Sbjct: 450 GAGERCAQLANRLLGFARGGKHQEMPVDLHTAAREVVDLLSRTIDKRITITQRLCVEQAV 509 Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLK 152 + +++LNL + A ++P GG + + + S+ Sbjct: 510 ALGDPSQIQQVILNLAVNARDAMPHGGNLHFETDVVTLDNDYCRRNLGATVGDYVMLSVT 569 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E ++ + + + V + + + + Sbjct: 570 DTGMGI-PQEIQGRVFEPFFTTKEPGKGSGMGLAMVYGIVKNHGGTIRVYSEEGSGTSFK 628 Query: 211 ALLE 214 Sbjct: 629 VYWP 632 >gi|229168357|ref|ZP_04296082.1| hypothetical protein bcere0007_33140 [Bacillus cereus AH621] gi|228615183|gb|EEK72283.1| hypothetical protein bcere0007_33140 [Bacillus cereus AH621] Length = 516 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ + + + D+ Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAVMHSVHIIMDHFDYISDI 400 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167 + ++ L + ++ + + + G E+ ++ Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506 >gi|220903844|ref|YP_002479156.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868143|gb|ACL48478.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 669 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 57/215 (26%), Gaps = 20/215 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69 + + H++ +P+ AI E L + E + + + + + Sbjct: 449 FVANVSHELRTPLTAIQGYAETLTSLDGPPECRRFGEIILKNGACLSRMVDDLLTLARLE 508 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 T ++L + + + + +S + ++ NL Sbjct: 509 GKSGSLELAPTDPREALAQATGMCREVLEHRRCRVESHLSADCRVMASLPHLTQVFRNLL 568 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD 180 A P GG + ++ + + F + +G + F + S Sbjct: 569 ENAGRYAPEGGSIRVTARQVGDSVAFRIADDGPGIPRQDLERIFERFYQVERHRGQASTG 628 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVV---LSAL 212 + + + + E + Sbjct: 629 LGLAICKHIIERHGGSIRAESPATDGSTALVFTLT 663 >gi|182434881|ref|YP_001822600.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463397|dbj|BAG17917.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 682 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 53/234 (22%), Gaps = 24/234 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLS 56 L + S + H++ +P+ I LE + + + ++ L Sbjct: 444 SAHRARLEEQRKA--MVSDVAHELRTPLSNIRGWLEAAQDGLADPDPAFVSSLLEEAVLL 501 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEK 108 G + ++ + + Sbjct: 502 QHIIDDLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPAL 561 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE--- 162 + + NL A P GG+VT+ + + + G+ + Sbjct: 562 RADPVRLRQAVGNLVSNAVRHTPEGGRVTLRAYACEEEAGTVLVEVADTGSGIPAEDLPH 621 Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V L + + + L Sbjct: 622 VFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVAGEGSTFVLRLP 675 >gi|170760225|ref|YP_001785596.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169407214|gb|ACA55625.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 417 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +P+ I LE + + +E ++ I Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPLTTIQAQLEAIMDGLWEPSEERLKSIY 236 Query: 55 LSSMSAIIR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + +L + + + + + D +QV Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVELEAVITTILTNFEKQLLDKDINLQVDLK 296 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + +++ ++++N+ A P G++ + + S+K +G + Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGVGISDEDKD 356 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411 >gi|218896487|ref|YP_002444898.1| sporulation kinase [Bacillus cereus G9842] gi|228900137|ref|ZP_04064370.1| hypothetical protein bthur0014_13440 [Bacillus thuringiensis IBL 4222] gi|218544901|gb|ACK97295.1| sporulation kinase [Bacillus cereus G9842] gi|228859543|gb|EEN03970.1| hypothetical protein bthur0014_13440 [Bacillus thuringiensis IBL 4222] Length = 421 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKSLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLCDYIQQLLASEVFLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGIGIPLA-IQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSDPD-GTTFTISIP 409 >gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 643 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 + + + ++ + + H++ +P+ AI ++L G + + + Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLSGEGAVSLSPERSREYAGII 396 Query: 57 SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + S L + VD + ++ VS Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCCDLMRLKADASGIALVSAP 456 Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R ++L+NL A PRGG+V + V+ + NG Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDVVVSDNGIGITEA 516 Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D + + + + V LA + + E ++ L Sbjct: 517 DLP-RLGDPFFQAGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574 >gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] Length = 917 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53 MA+ + +L L + + H+I +P+ AI L+ D+ + E M++I Sbjct: 532 MAQELKILKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSGLMVNCDDPEEKAEYMEII 591 Query: 54 RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + L + Q V+ + Sbjct: 592 ESNNDLLLRLINDILDLSKIESGILERKREKFNLAKVSGELYTMIQPKITNPEVEFILGN 651 Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 S I ++ +N A G ++ ++ +G Sbjct: 652 SGPDCWIFLDRNRLKQVWMNFLTNAVKCTHSGHIKMGYSLENGG-IKVYVEDSGVGI-PY 709 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + A + Sbjct: 710 EVQNRVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEIGFTSTPGVGSTFWAWIP 764 >gi|21674217|ref|NP_662282.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] gi|21647382|gb|AAM72624.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 808 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 +++ + M+LV L I HD + +G I + EL + ++ Sbjct: 428 QSVLLQIQKMELVGQLAGGIAHDFNNMLGVILGNAELALSSDDLEASVEENLQEIYRAAE 487 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDL 111 S+ L F R V + D +++ +++ Sbjct: 488 RSAEMISQLLAFARKQTAMPKLVHINEVVQDSLPILQRVAGEKIEIELRPCGDDCRLHID 547 Query: 112 SRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156 + +IL+NL + A ++ + + + + S+ G Sbjct: 548 PSQIDQILMNLCLNARDAMNGTGKIVIEVKRINIAPSQYSSGDFRLPGDFIMLSVTDTGQ 607 Query: 157 LARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 K I + + + V + +N+ + E L Sbjct: 608 GIADIHKS-HIFEPFFTTKAQGKGTGLGLSSVYGIVKQNRGFVDFESNVGVGTTFHIYLP 666 >gi|329121387|ref|ZP_08250012.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus DSM 19965] gi|327469677|gb|EGF15144.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus DSM 19965] Length = 650 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 16/225 (7%), Positives = 58/225 (25%), Gaps = 21/225 (9%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65 + + + + H++ +P+ I E++ + I S + + Sbjct: 343 AEKMRREFSANVSHELKTPLTTISGFAEMIAKGMCKDTEDIKNFSNKIHQESRRMLSLID 402 Query: 66 FMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + S+ + + A K ++++ E + + A + Sbjct: 403 TIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEPVYMYGNAALL 462 Query: 119 LLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN 171 + ++ + + ++ G F + Sbjct: 463 SELFMNLLDNAVKYNVEGGNITVHIKRVKEKLMKITISDTGVGIPEEKQNRVFERFFRVE 522 Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ I+ ++A L Sbjct: 523 ESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVTAELP 567 >gi|228925530|ref|ZP_04088620.1| hypothetical protein bthur0010_2580 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931775|ref|ZP_04094673.1| hypothetical protein bthur0009_2620 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944082|ref|ZP_04106462.1| hypothetical protein bthur0007_2590 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119932|ref|ZP_04249188.1| hypothetical protein bcere0016_2520 [Bacillus cereus 95/8201] gi|228663525|gb|EEL19109.1| hypothetical protein bcere0016_2520 [Bacillus cereus 95/8201] gi|228815595|gb|EEM61836.1| hypothetical protein bthur0007_2590 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827889|gb|EEM73625.1| hypothetical protein bthur0009_2620 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834131|gb|EEM79678.1| hypothetical protein bthur0010_2580 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 314 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L D I + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E I + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 308 >gi|218289691|ref|ZP_03493899.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218240148|gb|EED07332.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 429 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 59/224 (26%), Gaps = 20/224 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM 67 + + + + H++ +PI AI E L + ++ ++ I S+ + + Sbjct: 201 ERMRSDFVANVSHELKTPIAAIRGFAETLLDGDVDEEAREKFLRTIYEESLRMGNLVSDL 260 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA 116 + +VD L + + Sbjct: 261 LELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRLHVWAEPDLLL 320 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIV--DGN 171 ++ LNL A P +V ++ + +K NG P F + + Sbjct: 321 QVFLNLLTNAIHYSPPKSRVCVTWDVLVDRVKVHVKDNGIGIPKESLPRVFERFYRVHKD 380 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + E + L + Sbjct: 381 RSRASGGTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTLSR 424 >gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 859 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 +++ L + + A+ L + + H++ +P+ AI + +LL + + Sbjct: 612 LSEAQQELLQAGKMAAIGTLVAGLSHEMNNPVSAILMNAQLLLRRHRKGHGLPDEASLLK 671 Query: 51 ------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVS 103 + S L++ R D L + ++ Sbjct: 672 ALGTIERQAIRCSDLVTALLEYARGKPIGREPCDVRAALRRAVDLSAPRARERRVHLETD 731 Query: 104 WT----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155 E + + + LLN+ A + P G V + + + + +G Sbjct: 732 GNSSALPEVLVNASQLESALLNVIGNALDASPHGSAVVVEARPRPRGDIHGVEIDVHDHG 791 Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 R + +I + + + E++ + E + L Sbjct: 792 CGIRAEDLS-RIFEPFFTTKPPGQGTGLGLSLTHRFIEEHQGSIRIESAPGEGTTVRMWL 850 Query: 214 E 214 Sbjct: 851 P 851 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 23/217 (10%) Query: 22 ICHDIISPIGAIHNSLELL---DEVGIEDE---VMQLIRLSSMSAIIRLKF--------M 67 + H++ +P+ I LE L + + ++LI+ S + Sbjct: 199 MSHELRTPLSLILGPLESLLSSRDEPLSPRVRADLELIQRSGRRLRRLVDDVLDHQKIEA 258 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER-AKILLNLF 123 +VD + D+ + A ++V ++ R + KI LNL Sbjct: 259 GKMQIDWEAVDVGELVSDMVEEARPAAARGGLDLSIRVDPELRRVPADRRKLEKIALNLL 318 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNV--ESTIDS 178 A P GG+VT+ ++ S++ G + + + + Sbjct: 319 GNALKFTPPGGRVTVDLRALDGLFELSVEDTGPGIPADRRHLLFQRFQQIDASATRKHEG 378 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I L + E L + Sbjct: 379 TGIGLSLAKELTELMGGAVGVESEPGVGSRFFVRLPR 415 >gi|163797110|ref|ZP_02191065.1| ATP-dependent protease peptidase subunit [alpha proteobacterium BAL199] gi|159177626|gb|EDP62179.1| ATP-dependent protease peptidase subunit [alpha proteobacterium BAL199] Length = 507 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 20/248 (8%), Positives = 62/248 (25%), Gaps = 43/248 (17%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 + + + + H++ +P+ + +E L D+ D ++++R+ Sbjct: 254 RRTEQMRVD-------FVANVSHELRTPLATLLGFIETLQGPARDDAEARDRFLEIMRVQ 306 Query: 57 SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + + + + D RV + Sbjct: 307 GNRMSRLVQDLLSLSRIEISEHKPPSERIDLEPMLNSVKATLDLEARRKDMRVGLEVDAT 366 Query: 108 KIDLS---RERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLK 152 + E +++ NL A + S +++ Sbjct: 367 LPQVVGAADELTQVVQNLLDNAIKYGKPGTEITVAARRADRVPASYPGGPSGKAVAIAVR 426 Query: 153 INGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G+ E ++ + + + V + ++ L Sbjct: 427 DRGDGI-PAEHIPRLTERFYRVDAARSRDLGGTGLGLAIVKHIVSRHRGTLTIHSTPGEG 485 Query: 207 VVLSALLE 214 V + + Sbjct: 486 SVFTVYVP 493 >gi|153825540|ref|ZP_01978207.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-2] gi|229513634|ref|ZP_04403098.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TMA 21] gi|149740825|gb|EDM54916.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-2] gi|229349511|gb|EEO14467.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TMA 21] Length = 438 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 65/213 (30%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124 +++ L + E V ++ + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAELAPAFGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2] Length = 918 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +++ H+I +P+ + L+LL + ++ + + S Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + + Y D L D + + Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L+NL A G + ++S+ +G Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + L R+ S L Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDLP 632 >gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 628 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 60/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + + ++ + + + + H++ SP+ I LL + E ++ S Sbjct: 236 LERERAARIE-LERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSPEKIEQALES 294 Query: 57 SMSAII---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + V + I+ ++ + + Sbjct: 295 IERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISR 354 Query: 108 KIDL-------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +++ NL A P GG+V I ++ + + G Sbjct: 355 LNFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETNVQIRVTDTGKGISP 414 Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 F + + + V L + + + + L Sbjct: 415 EFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGTVSVASPGEGQGATFTVQLP 474 >gi|30260459|ref|NP_842836.1| sensor histidine kinase, putative [Bacillus anthracis str. Ames] gi|47777799|ref|YP_016896.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|65317711|ref|ZP_00390670.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|30253780|gb|AAP24322.1| putative sensor histidine kinase [Bacillus anthracis str. Ames] gi|47551504|gb|AAT29371.2| putative sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] Length = 314 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L D I + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E I + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 308 >gi|228990438|ref|ZP_04150403.1| hypothetical protein bpmyx0001_12000 [Bacillus pseudomycoides DSM 12442] gi|228768964|gb|EEM17562.1| hypothetical protein bpmyx0001_12000 [Bacillus pseudomycoides DSM 12442] Length = 400 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57 + N L+ + + I H++ +P+ + L+LL +E +L R Sbjct: 173 QEELINAEKFHLIGEMAASISHEVRNPLTSTKGFLQLLQSEECSEEDRKLYTEIAIRGIE 232 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ A L + I + + S Sbjct: 233 QANHVLTDYLTFAKPSIEKEQVLQIEDELLRAVSLITPLANLTNVRITYTKQSNIFCISG 292 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+ ++P+GG + +++ S + ++K G E+ ++ Sbjct: 293 EKQKFNQCLLNILKNCIEAMPKGGDLILTLIPSHTQIQLAIKDTGIGMDL-EQLKRLGSP 351 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ D Sbjct: 352 FYSTKEKGTGLGMMVVFSIVKAMGGKIDISSEKDIGTTFLLTFP 395 >gi|197106264|ref|YP_002131641.1| sensory box histidine kinase FixL [Phenylobacterium zucineum HLK1] gi|196479684|gb|ACG79212.1| sensory box histidine kinase FixL [Phenylobacterium zucineum HLK1] Length = 498 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 63/241 (26%), Gaps = 30/241 (12%) Query: 2 AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGA----IHNSLELLDEVGIED 47 + L + L AL + S + H++ P+ A + S+ LLD+ ++ Sbjct: 247 RQATERRLQDLQSELVHVARLTALGEMASALAHELNQPLSAAANYVKGSVRLLDQEPLDK 306 Query: 48 EVM--------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDK 98 + + + F+ L + + + Sbjct: 307 PKIKDALNLAGEQTLRAGQIIRRLRDFVAKGEAERSLESLPQLLEEAGALAMVGAKERGV 366 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLK 152 R+ + E + ++ +I + + ++ S+ Sbjct: 367 RLSFQISPEVGLVLADKVQIQQVVLNLMRNAIDAMEGSARRELVVSARPVEDEMVEISVA 426 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G PE + + + + + + + R+ E + Sbjct: 427 DTGPGV-SPEVADHLFQPFITTKREGMGVGLSISRTIVEAHGGRIWVEPNPKGGAIFRFT 485 Query: 213 L 213 L Sbjct: 486 L 486 >gi|149174286|ref|ZP_01852913.1| sensor protein atoS [Planctomyces maris DSM 8797] gi|148846831|gb|EDL61167.1| sensor protein atoS [Planctomyces maris DSM 8797] Length = 391 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 69/232 (29%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57 + KN L AL L + + H++ +P+ I N+ L +V E E +L+ L Sbjct: 158 LEKNRRKM---EKLAALGQLAAGVAHEVNNPLAGIRNAFALFKADVPAEHEHFELLELID 214 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTG 106 L + I+ +IED ++ + Sbjct: 215 REIERISSITHLMYQLYRPSAQCATSFLIDNIIEDVIRLLEPAAGKAQVRVEQEADTGDI 274 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + E +ILLNL A + GG V+I V+ + +G+ E + Sbjct: 275 QVTLPEGEVKQILLNLIQNAIQASAPGGTVSIRVRTHSETVKVQVADHGSGI-TEENLPR 333 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + L + +A Sbjct: 334 IFDPFFSTKTSTPRQGMGLGLSVSRSLIEAMGGSIDVMSAPGSGTCFTASFP 385 >gi|116626897|ref|YP_829053.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116230059|gb|ABJ88768.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 578 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 20/229 (8%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49 + + + A L R+ H++ +P+ + ++E + Sbjct: 351 QREKLVQAERVAAWRELARRLAHELKNPLFPLQITVENMQRARDRYPEQFDEVFREGTTT 410 Query: 50 -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + F R+ +VD + + ++ E +A + +V + Sbjct: 411 LLAELAQLKQIVGRFSDFARMPTPEIQAVDFHALITETLKLFEGQLAQARVREVIELDPR 470 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++L NL + A ++P GG +T+ + + G PE+ Sbjct: 471 VGRVNADPEQMTRVLRNLILNAIDAMPEGGTLTVRTKALDGRMRLEISDTGQGL-TPEEC 529 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + + V + ++ R+ E L Sbjct: 530 DRLFTPYYTTKTHGTGLGLAIVQSVVSDHGGRISVESEKGKGATFRIEL 578 >gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01] gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01] Length = 863 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +S+ + + + H+I +P+ I E+L + + +++ S+ Sbjct: 357 LVEAKEDAISANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSQLSANQQEVLGDIESSS 416 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + L+ +++ + ++ + + Sbjct: 417 HSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDINIDSQT 476 Query: 107 EK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 ++L NL A +G T + + S+ G Sbjct: 477 PPQLFFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKLECSVSDTGIGI-E 535 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PEK I + + + L + + + L Sbjct: 536 PEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGEGSTFTFCL 594 >gi|302342756|ref|YP_003807285.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639369|gb|ADK84691.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1224 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 63/243 (25%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQ 51 A+ + + A+ L I HD + +GAI EL E +V++ Sbjct: 839 ARLEAQLRQAQKMEAIGTLAGGIAHDFNNILGAIIGYTELAQELTREGASNADELAQVLR 898 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + L F R + + ++E + R++ + + Sbjct: 899 SADRARKLVQQILTFSRKVESDRRPLSLNKIVRQSVGMLEHTLPKMIRIETDLAADLRPV 958 Query: 112 SRERAKILLNLFM---VAHASLPRGG---------------KVTISVQDSKNENIFSLKI 153 + +I + A ++P GG + + Sbjct: 959 CADGNQIEQIILNIAGNAADAMPDGGRLLIETQNAILGEEYCRLHLDARPGQYAMLQISD 1018 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + QI D + + V + ++ + D Sbjct: 1019 TGRGMDQRTR-EQIFDPFFTTKEVGKGTGLGLAIVYGIVKDHGGHVSCYSEPDLGSTFKI 1077 Query: 212 LLE 214 L Sbjct: 1078 FLP 1080 >gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1135 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 63/238 (26%), Gaps = 29/238 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + + + H+I +P+ AI EL+ + ++ +R+ S Sbjct: 418 AKDAAEAANRAK--SDFLANMSHEIRTPLNAIIGMTELVMDTDLKVAQRDYLRMVLESGE 475 Query: 62 IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 L + LGD + + + V Sbjct: 476 SLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNRAHRKKLELAFHVSPDVP 535 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161 E + ++++NL A RG S + F ++ G Sbjct: 536 DEVRGDAVRVRQVIINLLGNALKFTERGEVVLDVSVESRTAEQVTLHFKVQDTGIGI-AK 594 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +KF I + + L + ++ E L Sbjct: 595 DKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWVESEVGQGSTFHFTL 652 >gi|220916345|ref|YP_002491649.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954199|gb|ACL64583.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 601 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 17/212 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + HD+ +P+ AI+ S LL G ++ + + R+ + S+D+ Sbjct: 390 AIVSHDLKNPLEAIYLSSALLLRSGAA-PRLRRHAETIQRSAARMDRLIRELLDLSSIDA 448 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSRERAKILLNLF 123 + + D + + +S ++L NL Sbjct: 449 GRLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGAREPVPCDRERILQVLSNLV 508 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 A PRGG VT+ + E ++ +G + + + Sbjct: 509 GNALQFTPRGGHVTVRATLAPTEARVEVRDDGPGIAPAQLRRVFDRYWKSGSRRGSGLGL 568 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L + R+ E L + Sbjct: 569 SIAKGLVEAHGGRIEVESRLGAGSTFRFTLPR 600 >gi|126656705|ref|ZP_01727919.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126621925|gb|EAZ92633.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 398 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/253 (9%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 1 MAKNICFNLSSMD------------------LVALLCSRICHDIISPIGAIHNSLELLDE 42 M K + +++ L + S + HD +P+ I S LL++ Sbjct: 131 MEKQLKEANQALEKRVEERTIQLLKAQELNQLKSEFVSILSHDFRNPLNTILLSTGLLED 190 Query: 43 VGIE---DEVMQLIRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQ 88 + ++ + ++ + + + ++ I Sbjct: 191 SHDQLTREQQLSYFQMIRQAVQDMNQLLSEVLLLGKADSGKLKPNFEKLNLQQFCQQIIH 250 Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKN 145 + + ++ + GE + + + L A P+GG + + + Sbjct: 251 SLHLSFEDENQIIAKFKGEFQEEFWDSKLLWHILHNLLSNALKYSPKGGNILFDIIVDEK 310 Query: 146 ENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202 F ++ G F + I + V + + + Sbjct: 311 LVTFRIEDQGIGISQTAQKHLFEPFYRADNVENISGTGLGLSIVRKCVEVYQGDIFVDSQ 370 Query: 203 DDHNVVLSALLEK 215 + + +L + Sbjct: 371 LNKGTTFTVILPR 383 >gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] Length = 668 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 72/234 (30%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL ++ + + + + Sbjct: 280 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 337 Query: 62 I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + ++ +G V I + + + + +A K++ + Sbjct: 338 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYPPVP 397 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG + + VQ S + +++ G P Sbjct: 398 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGLVATVRDTGIGIEPTFLPHV 457 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 F + + + L + R+ + ++ L Sbjct: 458 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASNGANLGTTMAVTLP 511 >gi|228990566|ref|ZP_04150531.1| hypothetical protein bpmyx0001_13280 [Bacillus pseudomycoides DSM 12442] gi|228769092|gb|EEM17690.1| hypothetical protein bpmyx0001_13280 [Bacillus pseudomycoides DSM 12442] Length = 417 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 61/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKLALAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFQNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109 + + L + Q + + + + Sbjct: 246 NSIITKFLSISKAHEFKREPFPINTFLREYIQQLLASEVFLHNISIEYNLSSDLEDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAKSDKPLSIQITSHRLDNFARITFQDNGTGI-PPAIQDYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L ++ + Sbjct: 365 DPFFSTKDAGTGLGLSVTRKIIQNHNGTLKVSSNEN-GTTFIISIP 409 >gi|228996667|ref|ZP_04156305.1| hypothetical protein bmyco0003_12530 [Bacillus mycoides Rock3-17] gi|229004316|ref|ZP_04162116.1| hypothetical protein bmyco0002_12800 [Bacillus mycoides Rock1-4] gi|228756950|gb|EEM06195.1| hypothetical protein bmyco0002_12800 [Bacillus mycoides Rock1-4] gi|228763096|gb|EEM12005.1| hypothetical protein bmyco0003_12530 [Bacillus mycoides Rock3-17] Length = 417 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 61/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKLALAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFQNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109 + + L + Q + + + + Sbjct: 246 NSIITKFLSISKAHEFKREPFPINTFLREYIQQLLASEVFLHNISIEYNLSSDLEDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAKSDKPLSIQITSHRLDNFARITFQDNGTGI-PPAIQDYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L ++ + Sbjct: 365 DPFFSTKDAGTGLGLSVTRKIIQNHNGTLKVSSNEN-GTTFIISIP 409 >gi|229068028|ref|ZP_04201337.1| hypothetical protein bcere0025_2450 [Bacillus cereus F65185] gi|229077629|ref|ZP_04210260.1| hypothetical protein bcere0023_3330 [Bacillus cereus Rock4-2] gi|228705683|gb|EEL58038.1| hypothetical protein bcere0023_3330 [Bacillus cereus Rock4-2] gi|228715095|gb|EEL66961.1| hypothetical protein bcere0025_2450 [Bacillus cereus F65185] Length = 314 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + + S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPD 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ E + G + + Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIQKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E + K Sbjct: 252 QNIFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308 >gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 874 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 61/235 (25%), Gaps = 27/235 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57 + M S + H++ +P+ +I +L LL +Q+ +S Sbjct: 626 TERKRVDRMK--NEFISTVSHELRTPLTSITGALSLLLNGAVGQPTEEFSRFLQIAYKNS 683 Query: 58 MSAIIRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + K + Sbjct: 684 QRLALLINDLLDMEKITAGGVKYSFSVEPVMPLVEQSIDTNRVYGQQHEVEYKIIHREDA 743 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +IL N A P+G V ISVQ +N S+ G PE +T Sbjct: 744 SLINVDPLRFQQILANFLSNAAKFSPQGCTVDISVQRRENYVRISVTDRGPGI-PPEFYT 802 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + LA + R+ E L Sbjct: 803 RIFKKFSQADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKGATFYVELP 857 >gi|269964589|ref|ZP_06178828.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII), sensor kinase [Vibrio alginolyticus 40B] gi|269830716|gb|EEZ84936.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII), sensor kinase [Vibrio alginolyticus 40B] Length = 365 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+++ E + + + A Sbjct: 134 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPEPSLTEYTHIIIEQA 192 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 193 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIIIERDYDPSLPEILMDT 252 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I + K + NG Sbjct: 253 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 311 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ E H + L Sbjct: 312 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 364 >gi|296123509|ref|YP_003631287.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015849|gb|ADG69088.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1015 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 67/237 (28%), Gaps = 26/237 (10%) Query: 5 ICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QL 52 + ++L + + H++ +P+ I N+LE + E + + Sbjct: 586 LRQAQQELELADRRKDFFLATLSHELRNPLTPISNALEAWRAADLSPEELTEVREMLSRQ 645 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGE 107 + L R++ G +++ L + Q ++ E Sbjct: 646 TKQMVRLIDDLLDVSRISGGKIQLKPAILDLRECIQTSIEVAQPLIRQAGHQLTTDLPNE 705 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + +I+ NL A G++ + V +++ + NG Sbjct: 706 PVWIKADATRIVQIVANLLNNAAKYTDPQGRIHLQVVPFEHQVEIQVVDNGAGIPAHMLE 765 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215 + I V LA + ++ + L + Sbjct: 766 QIFGMFEQVGSSLDRAQGGLGIGLTLVRSLAELHGGSVVAFSEGLGKGSRFTITLPR 822 >gi|218282707|ref|ZP_03488914.1| hypothetical protein EUBIFOR_01500 [Eubacterium biforme DSM 3989] gi|218216408|gb|EEC89946.1| hypothetical protein EUBIFOR_01500 [Eubacterium biforme DSM 3989] Length = 601 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 77/229 (33%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQLIRLS 56 I L A L I HD+ +P+ +I + LL E + + Sbjct: 364 KIEQQAKQEALRADLLRMISHDLRTPLTSISGNAGLLLENENAFSLEKKKELYQDIYNDA 423 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKID 110 + + + G++ IE + + I + + V + + Sbjct: 424 MWLYDLVENLLFITRIENGTMQLNQQPEMIEDIFREAIHHLGRNKRNHNISVRLEDDLLM 483 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++L+NL A P K+ +S + +N+ + ++ +GN P++ ++ Sbjct: 484 ANMDARLIIQVLVNLMNNAIKYTPENSKIVLSAKRIENKILIEVQDDGNGVLHPDQLFEM 543 Query: 168 VDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + D + + + ++ E ++ H LL Sbjct: 544 FYTENNHSGDTRRGMGLGLSLCKSIVLAHGGKIWVENVNPHGACFKFLL 592 >gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855] gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855] Length = 781 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 55/220 (25%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + H+I +P+ AI L+ + + + ++ I L+ Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTMADNVADEKLYSDIINQNSEILLQLIND 476 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + ++ + V + + Sbjct: 477 ILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 +++ NL A +G + F +K G + + Sbjct: 537 MQVVTNLITNAIKFTFKGEIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNT 595 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + E + + Sbjct: 596 FVQGTGLGLAICRVIVEKIGGEITAESKLNEGSTFRFTIP 635 >gi|144900011|emb|CAM76875.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 529 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 73/234 (31%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSS 57 M + + + +++ + + H+I +P+ ++ +++E L + + +++ +I+ Sbjct: 298 MTEALWARMDAIE---RFAADVAHEIKNPLTSVRSAVETAARLSDPEKQKKLLAIIQDDV 354 Query: 58 MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + R L L ++ Q + + + T Sbjct: 355 ERLNRLITDISDASRVDAEMSRADTEPVPLALLLATLAEVYQNTAETLHFPLDLPADDTL 414 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L NL A + P GG + ++ +++ +G + Sbjct: 415 VVDGIEGRLVQVLRNLIGNAISFSPEGGTIRLAASRHGPTIRLTIEDDGPGIPDGKL-DA 473 Query: 167 IVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + R+ E + L+ Sbjct: 474 IFDRFYTERPAGEKFGTHSGLGLSISKQIVDAHGGRIWAENRAEGGARFVVELK 527 >gi|114330759|ref|YP_746981.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas eutropha C91] gi|114307773|gb|ABI59016.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas eutropha C91] Length = 414 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 66/225 (29%), Gaps = 15/225 (6%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSS 57 N + L A+ + + + H + +P+ E LD + I Sbjct: 168 REQNRRNQRLAAMGEVAAGLAHQLRTPLSTALLYAGHLSAETLDAQERSSFAAKTIERLH 227 Query: 58 MSAIIRLKFMRLAFGYTGS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110 + ++ G + V + L ++QV+ + + V Sbjct: 228 HLEHLIRNMLQFVKGESVPAGKVKLSVLLRKLQQVMAPQMQQRQLRFVVEDNSMGSSLNV 287 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++NL A P G +T+ + + NE + G ++ + Sbjct: 288 NRDALSNAVMNLLDNAVQIAPAGSLITLICETTMNEARLIISDEGPGIDPV-LHERVFEP 346 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I+ + V L + + + + L + Sbjct: 347 FFTTRIEGTGLGLAIVHNLIQSMQGEIRIDSTPGIGTRFTICLPR 391 >gi|331268335|ref|YP_004394827.1| sensor histidine kinase [Clostridium botulinum BKT015925] gi|329124885|gb|AEB74830.1| sensor histidine kinase [Clostridium botulinum BKT015925] Length = 461 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 76/235 (32%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MAK++ + + S + H++ SPI +I + + + E+ + + Sbjct: 227 MAKSLE---EVEENRRVFISNVSHELRSPITSIKGFIGGILDGVIPKEKENYYLSVAYEE 283 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + ++ V + Sbjct: 284 IQRLTRLINDLLDLSSIEAGKFVLNVKEEDINEIIRLSIIKFETVIKSKKINVEVWLDDE 343 Query: 106 GEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + R+ +++ NL A G + I + + S+ +G + Sbjct: 344 RLSVLVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVKGQKVFVSVYNDGPNISKEDGK 403 Query: 163 -KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + G+ T+ S + V + ++ + E ++ V+ + L+K Sbjct: 404 YIWDRFYKGDKSRTLKVSTGLGLSIVRRIVTQHGGDIWFENKENKGVIFTFTLKK 458 >gi|322421715|ref|YP_004200938.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320128102|gb|ADW15662.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 486 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 36/248 (14%) Query: 1 MAKNICFNLSSMD----------------LVALLCSRICHDIISPIGAIHNSLELLD--- 41 +A+N+ + + V L + I H+I +P+ I +++ L Sbjct: 216 LAENLNEMVKKLKEKEQLEKRLYEAEHLSKVGQLAAGIAHEIRNPLNYISLAIDHLKSEL 275 Query: 42 -----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVI 90 E G E + + + + + +G + ++ + Sbjct: 276 LPSCPEKGGELKSIADNIKEEVRKANYMVLNFMNYGRPLKLKLQQVSYPDLVDKAMQIMQ 335 Query: 91 EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKN-- 145 + + V + + + + L + ++P GG +TI + Sbjct: 336 DRLTERNIEVAREIPADLPAMQMDPELMRNCLCNFISNSTQAMPEGGTITIGAGIAPESG 395 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 E + G + ++ + + + E+ + + Sbjct: 396 EYRLTFSDRGVGIDEQDL-EKVFQPYFTTREAGIGLGLAITERIIKEHGGSITVQSRKGE 454 Query: 206 NVVLSALL 213 + +L Sbjct: 455 GTTFTVIL 462 >gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 559 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + + ++ L + + + H++ +P+ +I + ++ + + + + ++ Sbjct: 308 EQDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGISGEINEEQRKQLSMVHS 367 Query: 56 SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 SS+ + + + + ++ +I Sbjct: 368 SSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNVSLLISKKEVKLITEIPD 427 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E R +ILLNL A +G V I + N+ S+ G + + Sbjct: 428 EIPEIYSDKRRVFQILLNLVSNAIKFTEKGE-VRIKCEVDGNKLKISVSDTGKGIKEEDM 486 Query: 164 F-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + G+ + Y L + E + L Sbjct: 487 ETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFTLP 542 >gi|238762839|ref|ZP_04623807.1| hypothetical protein ykris0001_31490 [Yersinia kristensenii ATCC 33638] gi|238698850|gb|EEP91599.1| hypothetical protein ykris0001_31490 [Yersinia kristensenii ATCC 33638] Length = 900 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSHHQIKVDLP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + + NG + Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYTAMLGIRAKVQGEWLNVEVWDNGPGVTAGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E D L Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGASFHFTLP 883 >gi|218531281|ref|YP_002422097.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523584|gb|ACK84169.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 942 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 66/241 (27%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53 K S L A+ L + HD + + I + ++L + +E Q Sbjct: 562 KTEDALRQSQKLEAIGQLTGGVAHDFNNLLTVIRGAAQMLCRPTLSEERRQRYAEAISET 621 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ L F R + + I ++ + + + E + Sbjct: 622 ADRAAKLTSQLLAFSRRQALKPEVFNVGQRVEVIADMLRTVVGSRVELTTNTECEICYVE 681 Query: 113 RERAK---ILLNLFMVAHASLPRGGK-------------VTISVQDSKNENIFSLKINGN 156 + ++ L+N+ + A ++ G+ + + G Sbjct: 682 ADPSQFETALVNMAVNARDAMDGVGQLAVTIEPTKAVPGIRGHKAAEGEFVAVYVTDTGT 741 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 EK QI + + + V A ++ + E L Sbjct: 742 GI-PSEKLAQIFEPFFTTKEVGKGTGLGLSQVYGFAKQSGGEVGVESTVGEGTTFKVYLP 800 Query: 215 K 215 + Sbjct: 801 R 801 >gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] Length = 574 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 18/247 (7%), Positives = 64/247 (25%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53 + + ++ ++ + + H++ +P+ A+ +LL + + ++ I Sbjct: 324 LEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLQDDATDLDLTGDFITDLETI 383 Query: 54 RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + Y + + + ++ ++ I + + + Sbjct: 384 NSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLINNVVLTVKSAIDKNNNILEVYC 443 Query: 106 GE----KIDLSRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKI 153 + ++LLNL + K + + + + FS+ Sbjct: 444 DQQLGTMYADQTRMRQVLLNLLSNSAKFTTNGKVTLTVKREKTDLPPEAAFDMITFSVTD 503 Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + Q+ + + + Sbjct: 504 TGIGMSESQ-QQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFCQMMGGEVFVKSQPGVGS 562 Query: 208 VLSALLE 214 + L Sbjct: 563 TFTVHLP 569 >gi|222054698|ref|YP_002537060.1| histidine kinase [Geobacter sp. FRC-32] gi|221563987|gb|ACM19959.1| histidine kinase [Geobacter sp. FRC-32] Length = 542 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 19/226 (8%), Positives = 60/226 (26%), Gaps = 16/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSM 58 + S L ++ L + I H+I +P+ I L+++ D ++ I + Sbjct: 290 QAQLIRSEKLASIGELVAGIAHEINNPLTGILVFSSLVNDDPKLDPELKDDLKTIVQETE 349 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKIDLSR 113 +K + + L + DI + + + + +T + D+ Sbjct: 350 RCSKIVKGLLDFSRESLPQKKLSSINDILDLALSLVEHQILFQNIALIKDYTFDMPDIML 409 Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + + + + + + + G Sbjct: 410 DPNQFEQVFINMLLNAGQSMANGGSLNIRTGITEDGLSEFIGISDTGCGIPEENLTKIFD 469 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + + + + L Sbjct: 470 PFFSTKENKGTGLGLSVSYGIIRNHRGDICVQSVVGNGTTFTIELP 515 >gi|110638473|ref|YP_678682.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] gi|110281154|gb|ABG59340.1| sensor histidine kinase/response regulator fusion protein (sensor for arcA) [Cytophaga hutchinsonii ATCC 33406] Length = 492 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 64/233 (27%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----- 51 + +++ N+ ++ + HD+ +P+ +I+N ++L++ + Sbjct: 257 LNQDLHENIQQLENANKELESFSYSVSHDLRAPLRSINNYAQMLEDAFAAQMDEKSTRLL 316 Query: 52 --LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTG 106 + R + + + + V + + Sbjct: 317 GNIKRNAFRMDTLIDDLLAFSRLGRKPVQKQSINMNDLVQHVYADMQGTFKGEFVLPALP 376 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE-- 162 + ++++NL A + + I + N ++ +K NG Sbjct: 377 DIDADYNLLKQVVVNLLSNAIKYSGKIEEPRIEVGYTKNPNAVVYYIKDNGAGFDMEYSD 436 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E L Sbjct: 437 KLFGVFQRLHSTKEFEGTGVGLAIVKRIVEKHGGTIWAEAKVGEGATFYFSLP 489 >gi|307822869|ref|ZP_07653100.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307736473|gb|EFO07319.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 417 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPI-GAIHNSLEL----LDEVGIEDEVMQLI 53 M L A+ + + + H + +P+ AI + ++ LDE + +++ Sbjct: 162 MRNLQDMLNQQKQLSAMGEMVASMAHQVRTPLATAILYASQMSNPALDEEKRQRFSQKIL 221 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + A ++++ + + E ++ + Sbjct: 222 ERLQYLERQVNDMLIFAKDGRLAMETFSLAELLSHLREAVKEYTGSGRIDLQIINDVQND 281 Query: 114 ER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 LLNL A +L + G V ISV +K +G E Sbjct: 282 AMLGNENALRGALLNLLNNAVDALGQVGCVQISVTQLDACNLRVVVKDDGPGI-AKELCQ 340 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + + E + V + +L Sbjct: 341 RVFEPFFTTKSYGTGLGLAVVDSVVKAHGGHVSVESVLGQGTVFTLVLP 389 >gi|299065136|emb|CBJ36300.1| sensor histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Ralstonia solanacearum CMR15] Length = 937 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55 A++ + S L L + + HD+ +P+ + E L +Q + Sbjct: 691 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLAGMAETLLRTQPPLPPLQAEAAEAIGEQ 750 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTGEK 108 + + + +A V + IE++ ++ Sbjct: 751 AQRMRAMVTNLLDMARLQNRDVKLRLEWQSIEELVGAALKGTPLPTHAVVVDDLADLPLL 810 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPE- 162 ++L NL A P G +V I +E ++ +G Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVVHDAAHGDEMRVRVRDHGPGVPAGAE 870 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ ES + + + R+ E D L Sbjct: 871 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPADGGACFVVALP 924 >gi|260772841|ref|ZP_05881757.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260611980|gb|EEX37183.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 578 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 57/235 (24%), Gaps = 27/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + + + + H++ +P+ A+ +++L E + L+ SA Sbjct: 200 AQQQAEHANQAK--SQFLAMMSHELRTPLNAVLGLIDVLRE-DSNRSQLDLLEQMENSAE 256 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + ++ + + + + I + R + Sbjct: 257 LLLVIINDILDLSRIESGHFKLQCHWVHLHKKLVHALSYHHKACVTKGIRFNVRTSICDH 316 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E +IL N+ A G ++ G PE+ Sbjct: 317 YEYWVDPVRLMQILFNVIGNAIKFTEAGSVDVRLSTARNELV-IHVEDTGIGI-EPERIE 374 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L K + L Sbjct: 375 HLFSPFIQADSSITRHYGGTGLGLAITKHLVELMKGTISVSSCLGQGSHFIIRLP 429 >gi|158338730|ref|YP_001519907.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308971|gb|ABW30588.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 805 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 65/243 (26%), Gaps = 34/243 (13%) Query: 3 KNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLI 53 + LS A + SR + H++ +P+ AI +++ + + + + Sbjct: 449 QQSNLELSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQMMAQDTTLSEANHKRN 508 Query: 54 RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 RL + S + +R ++ + ++ + +A Sbjct: 509 RLINQSGEHLLGLINDILSLAKLESGKQELREGPFQLSTLLETVEGIFRLRIEQKGLAFR 568 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKIN 154 + +++ ++L+NL A ++ + F ++ Sbjct: 569 VKATPDLPPYLFGDAQKLRQVLINLLSNALKFTPAGHIFLRIGSIPTPAGLTLRFEIEDT 628 Query: 155 GNLARFPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G E ++ ++ + A + Sbjct: 629 GEGIAASELH-KLFVPFEQTESGEKSKAGTGLGLPISQQFAQLMGGDIKVSSQVGQGTTF 687 Query: 210 SAL 212 + Sbjct: 688 TFT 690 >gi|148656475|ref|YP_001276680.1| histidine kinase [Roseiflexus sp. RS-1] gi|148568585|gb|ABQ90730.1| histidine kinase [Roseiflexus sp. RS-1] Length = 399 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 66/228 (28%), Gaps = 15/228 (6%) Query: 1 MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSS 57 +A + M L L + HDI + ++ +LL + ++ I ++ Sbjct: 154 LATTERLRPIEEMQLRVTLAAGAAHDIGNLFASVLGHAQLLQQAAPLELQNDLKTIEQAA 213 Query: 58 MSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106 L+ + + V + D ++ + + ++ ++ Sbjct: 214 RDGHHLLRRLLSARNASYMPETTMAPVLLTELVHDALRLTQPWWGARHSVTVKIALTPVP 273 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L+NL + ++P GG +T+ I + G + Sbjct: 274 PVRGHPADLREVLVNLILNGVDAMPEGGTLTVRTYSVNERAIVEISDTGVGIAPAHQNA- 332 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + + + I S L Sbjct: 333 IFQPFVTTRKGGSGLGLSVSRAIIERYGGTISVSSIPGRGATFSISLP 380 >gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 870 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 61/240 (25%), Gaps = 30/240 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ S + + + H+I +P+ AI LL + + ++ S Sbjct: 377 AKDTAEAASKAK--SEFLANMSHEIRTPMNAILGFTSLLSPLITDPRQKNYLQSIQSSGK 434 Query: 62 IRL----------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + ++ SV + + + + + Sbjct: 435 NLMSLINDILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWIIQDKGLQFITSIASDVP 494 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARF 160 + +IL NL A G + +++ + ++ G + Sbjct: 495 ECVLLDEVRLRQILFNLVGNALRFTESGWIRLSAWREAGAGDGSFCLVMVVEDTGMGIQ- 553 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + L + + V L Sbjct: 554 PEAHNRIFESFRQQSGQRARVYGGTGLGLTISKSLVEMLGGTISVQSRPGAGSVFEIRLP 613 >gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 998 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 65/237 (27%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + + H+I +P+ AI LL E + E I + + Sbjct: 487 LKKAKREAEEAARVKSDFLANMSHEIRTPMNAIIGMTSLLLEEPLTPEQRDCIEVIETNG 546 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104 L + ++ ++ L + + I + + + S Sbjct: 547 DALLTVINDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINAANKGLNLAYSIDKSV 606 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161 + + ++L NL A +G V D N F ++ G Sbjct: 607 PEMIVGDPSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNVIQFEVRDTGIGIPQN 666 Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + + L K R+ E + + Sbjct: 667 RMKLLFLPFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAESSEGTGSSFHFTI 723 >gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 930 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 20/239 (8%), Positives = 46/239 (19%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 +++ + + + + H+I +P+ I ++ EV + + L Sbjct: 422 ERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQMTLSQTPRPEVREHLELIL 481 Query: 58 MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQ 101 S+ D L + R+ Sbjct: 482 DSSRSLLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFSSRQKGLRLSLRIA 541 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLA 158 +++ NL A +G S++ G Sbjct: 542 QELPDILHGDPDRIMQVVRNLVGNALKFTDKGEVAVEFRLLRPGDPMLVECSVRDTGIGI 601 Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L + V S Sbjct: 602 PEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGVRSRPGQGSVFSFT 660 >gi|229134443|ref|ZP_04263256.1| hypothetical protein bcere0014_33540 [Bacillus cereus BDRD-ST196] gi|228649064|gb|EEL05086.1| hypothetical protein bcere0014_33540 [Bacillus cereus BDRD-ST196] Length = 516 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 I + + + + + ++ I + + + Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDI 400 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167 S + ++L+N+ A ++P GG + I +N + G E+ ++ Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGI-PEERMARL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + + L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506 >gi|196228678|ref|ZP_03127544.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226959|gb|EDY21463.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 891 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMS 59 ++ M+ + L I HD+ + +G I +++L + + ++L+ S+ Sbjct: 510 ESQFLRAQRMESIGTLAGGIAHDLNNVLGPIIMAVDLFRLKMTDPQDLELLETVSVSARR 569 Query: 60 AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 +K + V L + I + T + Sbjct: 570 GADMVKQVLSFARGLEGQRTLVRPVQLLKEVQRIARDTFPKFISVDITTAEDTWSLLGDP 629 Query: 113 RERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157 + ++LLNL + A ++P+ + + +G Sbjct: 630 TQLHQVLLNLCVNARDAMPQGGRLTLNACNQRIDDHFAAMHPEARPGPHVVLEVADSGTG 689 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ +I + + + + + + + E L Sbjct: 690 M-TPDVIEKIFEPFFTTKEVGKGTGLGLSTTLAIVRSHNGFVTVESHPGKGTKFRVHLP 747 >gi|75908655|ref|YP_322951.1| periplasmic sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702380|gb|ABA22056.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 537 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 20/203 (9%), Positives = 61/203 (30%), Gaps = 12/203 (5%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 H++ +PI I LEL+ E + + + + + + ++ Sbjct: 323 HELRTPITIIRGHLELMGNDPKEIQETLTIVIDELERMNRFVNDLMLLAKAERPDFLLLE 382 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGK 135 + E++ + R+ + + +R ++ + A Sbjct: 383 TFDVCTFTEELFAKVKGLGDRIWKLEAVARGKIVGDRQRLTQAVMNLAQNATQHTNNTDT 442 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSHDIQFYYVILLAH 191 + + +++ F ++ G + F + + + V +A Sbjct: 443 IALGSMIYRDKVSFWVRDTGAGIASADQYRIFQRFARATNSRRLSEGAGLGLSIVQAIAE 502 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 +K R+ + V + ++ Sbjct: 503 AHKGRVTLQSELGAGSVFTIIIP 525 >gi|67923906|ref|ZP_00517363.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67854258|gb|EAM49560.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 374 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 20/215 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIRLKFMRLA----- 70 L S + H++ +P+ + LE L IE + + + ++ Sbjct: 158 LISDMTHELRTPLTIMRGYLEELANGSIEGSPELYLNLVKETRRLERLIHDLQELSKAEA 217 Query: 71 -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + I D+ K + + S +IL+NL Sbjct: 218 GYLSISLYPINILPLLTSLVERFADQIMDYGPTIKLECIQELPPVLADSDRTEQILVNLI 277 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178 A +G + + + + G + + F + + + Sbjct: 278 GNAIRYTEKGTITIKAWSE-NKQVWVEIIDTGIGIKPEDLPYVFERFWRADKSRSRYSGG 336 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I L ++ E D L Sbjct: 337 TGIGLAITRRLVELQGGKIEVESEVDQGTTFRFNL 371 >gi|254558948|ref|YP_003066043.1| two component low oxygen sensor histidine kinase with PAS domains; FixL [Methylobacterium extorquens DM4] gi|254266226|emb|CAX21984.1| two component low oxygen sensor histidine kinase with PAS domains; FixL [Methylobacterium extorquens DM4] Length = 516 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE---- 46 + L S L A+ + S + H++ P+GAI N LL G E Sbjct: 267 TQQRLQELQSELVHVSRLSAMGEMASTLAHELNQPLGAISNYTKGCRRLLANPGPEAIAK 326 Query: 47 -----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVD 97 D+ + + +F+ + + + + Sbjct: 327 SMEVLDKTAEQALRAGQIIRRLREFVTRGETERRLEPVSRLIEEASALALVGAREQGVAA 386 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKIN 154 + + + ++L+NL A ++ + + ++V S+ Sbjct: 387 RIRIAPGLKAVLADRVQVQQVLVNLMRNAREAMQQSERREMAVDAHALSSEMVEISVSDT 446 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G E ++ V + + + + + RL E L Sbjct: 447 GPGI-ADEVADRLFQPFVTTKVSGMGVGLSICRTIIEAHGGRLTVERNVAGGATFRLTL 504 >gi|257068118|ref|YP_003154373.1| histidine kinase [Brachybacterium faecium DSM 4810] gi|256558936|gb|ACU84783.1| histidine kinase [Brachybacterium faecium DSM 4810] Length = 415 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 71/234 (30%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A ++ + + + + H++ +P+GAI E +++ + + ++ Sbjct: 142 LADDLTRAVRVEETRRDFVANVSHELKTPVGAITLLAETMEDAAEDPDAVRRFAGRMQGE 201 Query: 61 IIRLKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 RL + V +I+ V+E+ +A+++ + + E + Sbjct: 202 TRRLSHLVQEIIELSRVQGGSALPDAEPIEIDDVVEEAVALNRNLALGSKIEVSVGGMQG 261 Query: 116 AKILLNLFM----------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ + M A + ++ ++V+ S+K G Sbjct: 262 LQVFGSAAMLTTALSNLISNAISYSDARTRIGVAVRRDGGMVEISVKDQGIGIAKDHLER 321 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A ++ + + + L Sbjct: 322 VFERFFRVDRARSRATGGSGLGLAIVKHIASDHGGEVTAWSLPGQGSTFTLRLP 375 >gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 765 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 65/245 (26%), Gaps = 35/245 (14%) Query: 2 AKNICFNLSSMDLVALLCSRI--------CHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 L A + SR+ H+I +P+ + LL + + DE + Sbjct: 367 RHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTELSDEQREYA 426 Query: 54 RLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVS 103 +S + + + G ++ ++ +IE+ A +K + + Sbjct: 427 ETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRAREKNLSLD 486 Query: 104 WT------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKI 153 W I ++ ++LLNL A G + ++ Sbjct: 487 WQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDALLLEVAVAD 546 Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G E +I + + L ++ + Sbjct: 547 TGIGISPGEMM-RIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKSQPGRGS 605 Query: 208 VLSAL 212 S Sbjct: 606 TFSFT 610 >gi|223937199|ref|ZP_03629106.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223894221|gb|EEF60675.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1309 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 72/243 (29%), Gaps = 30/243 (12%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 +N+ L M+ V L I HD + + I LL + +++ Sbjct: 921 RQNLEAQLRQSQKMESVGQLAGGIAHDFNNILTVIQGHGSLLGMVEHLPKEAQDSAQQII 980 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R +D + ++ +++ + D +QV++ Sbjct: 981 LAAERAANLTKQLLTFSRRQVIQPKELDLNEVISNMTKMLRRLLGEDITLQVNYAPSLPQ 1040 Query: 111 LSRE---RAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152 + + +ILLNL + A ++P +G + + ++K Sbjct: 1041 VHADPGMMEQILLNLAVNARDAMPKGGRLLIYSSAMTLDQGQALRHPGARAGEYVCVTVK 1100 Query: 153 INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + + V + ++K + + + Sbjct: 1101 DTGTGIAPEHVPKIFDPFFTTKDVGKGTGLGLATVYGIVQQHKGWITVDSTVGKETIFQI 1160 Query: 212 LLE 214 L Sbjct: 1161 FLP 1163 >gi|218779534|ref|YP_002430852.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760918|gb|ACL03384.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 781 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 62/241 (25%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 ++ + + L S I HD + + AI E+ + E + + + +S Sbjct: 400 ESQLQQAQKAEAIGTLASGIAHDFNNILSAIMGYTEMCTMEIPEGSMAHNNLLQVLKASH 459 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115 A + + G + + + + +++ + Sbjct: 460 RAKDLVGQILTFSRQKGQEQKPVQMDLVVNEALKLLRASLPSTITFRRYIKREMGKVLAD 519 Query: 116 ----AKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKING 155 ++L+NL A ++ + ++ G Sbjct: 520 PTALHQVLMNLCTNASHAMRNAGGVLEVRLENKAFEPDEPLPDPGMAPGRYLRLTVSDTG 579 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + +I D + + + V + + + + + L Sbjct: 580 HGM-DAQTMERIFDPYFTTKEMGEGAGLGLAVVQGIVNSHGGVITVKSTLGEGSSFRVYL 638 Query: 214 E 214 Sbjct: 639 P 639 >gi|161527757|ref|YP_001581583.1| histidine kinase [Nitrosopumilus maritimus SCM1] gi|160339058|gb|ABX12145.1| histidine kinase [Nitrosopumilus maritimus SCM1] Length = 459 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 82/222 (36%), Gaps = 10/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSS 57 +N + + + +RI HD+ +P+ I N++ ++ E + +I+ Sbjct: 234 QNELVKTERLTTIGEMSARITHDLRNPLTTIKNAVAVMKMKNPEKIKENQQYFDMIQDGV 293 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 ++ + + + +I + + I++ + +++S + + ++ + Sbjct: 294 TRMNHQIDEVLAFVKAKEPERNFVEFSEISNNVLNTISIPENIKISISESNEKIWCDKIQ 353 Query: 118 IL---LNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + +N+ + ++ G++ I + + ++K NG + + Sbjct: 354 LQNVLINMISNSVQAIGKNQGEIIIDYKIEGEFDKITVKDNGTGIPEN-LLDAVFEPLYT 412 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + + ++ + +D+ + + LL K Sbjct: 413 TKQDGTGLGLVSCKNAVEAHNGKIYAQNLDEGGAIFTILLPK 454 >gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] Length = 649 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 122 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 181 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 182 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 241 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 242 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 301 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 302 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 355 >gi|94265878|ref|ZP_01289607.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453573|gb|EAT03972.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 436 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 68/240 (28%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A + + + + H++ +P+ ++ ++LL + + Q + + + Sbjct: 32 LALDRAERADTAK--SRFMAGFSHEVRNPLNSLLGLIDLLRQTELTPRQQQFMEMIDHTG 89 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104 L + A +T + + L ++ Q + I+ ++ Sbjct: 90 QHLLGVLNQALSFTSLEQASLELNEMEFDLPALLRGIFSPYQLQWQQRGISGQLQLDPEL 149 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161 ++L+NL A +G + ++ + ++ G Sbjct: 150 PALWHGDPHRLRQVLVNLLDNAGKFTQQGRITLAANMEQRNGRPFVHCRVEDTGVGIPAA 209 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + S + L + D +L + Sbjct: 210 KA-EKIFTPFAQADGSISSRFGGTGLGLTICRQLIELMGGEIWVTGGDRSGSSFHFVLPR 268 >gi|291523774|emb|CBK89361.1| Signal transduction histidine kinase [Eubacterium rectale DSM 17629] Length = 499 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 71/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + KN +++ +L S I HD+ +PI A+ E + + ++ V + Sbjct: 251 LKKNAEEKVTNESENRVLISNIAHDLKTPITAVKGYAEGILDGVANTPEKVDKYVRTIYN 310 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + T + + I + V Sbjct: 311 KANDMDKLINELTLYSKIDTNRIPYNFAKINVTDYFNDCVEEIGLDLEAKNIRLSYENHV 370 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + +++ N+ + + + + I + D + ++ NG Sbjct: 371 DSNVLIIADPEQIRRVINNIVGNSVKYMNKTQSYIDIRINDVGDFIQVEIEDNGRGINQR 430 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ ++ + + ++ K Sbjct: 431 DMPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKEGDGTTMFFVIRK 489 >gi|238922877|ref|YP_002936390.1| sensor histidine kinase [Eubacterium rectale ATCC 33656] gi|238874549|gb|ACR74256.1| sensor histidine kinase [Eubacterium rectale ATCC 33656] Length = 503 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 71/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + KN +++ +L S I HD+ +PI A+ E + + ++ V + Sbjct: 255 LKKNAEEKVTNESENRVLISNIAHDLKTPITAVKGYAEGILDGVANTPEKVDKYVRTIYN 314 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + T + + I + V Sbjct: 315 KANDMDKLINELTLYSKIDTNRIPYNFAKINVTDYFNDCVEEIGLDLEAKNIRLSYENHV 374 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + +++ N+ + + + + I + D + ++ NG Sbjct: 375 DSNVLIIADPEQIRRVINNIVGNSVKYMNKTQSYIDIRINDVGDFIQVEIEDNGRGINQR 434 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ ++ + + ++ K Sbjct: 435 DMPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKEGDGTTMFFVIRK 493 >gi|227873345|ref|ZP_03991606.1| integral membrane sensor signal transduction histidine kinase [Oribacterium sinus F0268] gi|227840823|gb|EEJ51192.1| integral membrane sensor signal transduction histidine kinase [Oribacterium sinus F0268] Length = 469 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA+ I + + + HD SP+ +I LE + + E++ + + Sbjct: 232 MAEEIQKSDDYQR---QFIANVSHDFRSPLTSIKGYLEAMLDGTIPKEAEEKYLLRLISE 288 Query: 57 SMSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWT 105 + + + + S L + + + + + V Sbjct: 289 TERLSKLTQSMLSLNKLDQGSSLNRSNFDLNRMIREVCASFEMQCQKKKLGFSLVFAEKK 348 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + ++ NL A ++ I + + + +K G + Sbjct: 349 QMVNGDYPKIQQVFYNLLDNAVKFSKEDSEIQIRTEQKGTKVLVGIKDQGIGIPKKDLGK 408 Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ D + V + + + + S L Sbjct: 409 IWERFYKTDISRGKDKAGTGLGLAIVKSIITAHGENIDCVSTEGVGTEFSFSLP 462 >gi|298530785|ref|ZP_07018187.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510159|gb|EFI34063.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 693 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 33/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------- 51 + K + S + L L + H+I +P+G I +LL E DE + Sbjct: 431 LKKYQEQLIQSQKMEDLGRLAGGVAHEINTPLGIILGYTQLLLEEVENDEWAEDLKTIEK 490 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKID 110 ++ L F R + + VD L ++ ++ R+ S Sbjct: 491 QTKICRKIVADLLGFSRYSQSTSQPVDMNRSLEEVIKLVEHVLSLSHIRIYKSLDPNIPP 550 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165 + ++ LNL A ++ + G + + + I S+ G E + Sbjct: 551 FVGDHERLKQVWLNLINNAADAIGQDGVIYVKSKLCAHRQRIIISIADTGAGI-EEESLS 609 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIID---------------DHNVV 208 +I D + + + ++ + V Sbjct: 610 KIFDPFFTTKSVGKGTGLGLSVSFGIIKDHGGDISALSPPPVEYLPRDFPRSPSYGPGTV 669 Query: 209 LSALLE 214 L Sbjct: 670 FIVELP 675 >gi|298482826|ref|ZP_07001009.1| two-component system sensor protein [Bacteroides sp. D22] gi|298271026|gb|EFI12604.1| two-component system sensor protein [Bacteroides sp. D22] Length = 541 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEEKQEFVKIISSNN 363 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 I+ L+ + +T + + L + VQ+ + Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQ 423 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A +G + ++ F +K G +K Sbjct: 424 CIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGI-PADKI 482 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPR 535 >gi|296166497|ref|ZP_06848928.1| phosphate regulon sensor histidine kinase protein PhoR [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898109|gb|EFG77684.1| phosphate regulon sensor histidine kinase protein PhoR [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 480 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 56/211 (26%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ +P+ I EL + D M L R+ S ++ + + L V + Sbjct: 257 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGMLVDDLLLLARLDVQRPLE 316 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKI-------------DLSRERAKILLNLFMVAHAS 129 ++ + AV + ++L NL A Sbjct: 317 HNRVDLLALASDAVHDAQAMDPGRTITLEVLDGPGIPEVLGDEPRIRQVLSNLVANALQH 376 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P VT+ V ++ + + G + F + + + Sbjct: 377 TPEAADVTVRVGTEGDDAVLEVADKGPGMTEQDASRVFERFYRTDSSRARASGGTGLGLS 436 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 437 IVDSLVRAHGGAVTVTTAPGEGCRFRVTLPR 467 >gi|237713589|ref|ZP_04544070.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406312|ref|ZP_06082861.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646555|ref|ZP_06724191.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806620|ref|ZP_06765454.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229446311|gb|EEO52102.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355015|gb|EEZ04106.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638078|gb|EFF56460.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294446156|gb|EFG14789.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 541 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEEKQEFVKIISSNN 363 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 I+ L+ + +T + + L + VQ+ + Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQ 423 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A +G + ++ F +K G +K Sbjct: 424 CIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGI-PADKI 482 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPR 535 >gi|169794307|ref|YP_001712100.1| two-component sensor [Acinetobacter baumannii AYE] gi|213159118|ref|YP_002321116.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB0057] gi|215481864|ref|YP_002324046.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB307-0294] gi|239502827|ref|ZP_04662137.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB900] gi|301345739|ref|ZP_07226480.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB056] gi|301511639|ref|ZP_07236876.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB058] gi|301596187|ref|ZP_07241195.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB059] gi|332850112|ref|ZP_08432499.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii 6013150] gi|332871440|ref|ZP_08439957.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii 6013113] gi|169147234|emb|CAM85093.1| two-component sensor [Acinetobacter baumannii AYE] gi|213058278|gb|ACJ43180.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB0057] gi|213988006|gb|ACJ58305.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii AB307-0294] gi|332730961|gb|EGJ62267.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii 6013150] gi|332731477|gb|EGJ62767.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii 6013113] Length = 452 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78 I H++ +P+ + +E + + + S R+ + +++ Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ +A+ K Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445 >gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] Length = 991 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 59/229 (25%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + + L + + H+I +P+ AI +L E+E + + + + Sbjct: 620 AKNRAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 677 Query: 62 ----------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TG 106 K S + L + V++ + Sbjct: 678 LLLQLISDILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKLKSDNVKLEFVAPEEPC 737 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++++N A +G + + F + G + + Sbjct: 738 FANIEKNRLSQLIINFVTNAIKFTSQGSIRFGYERQNNE-LYFYVTDTGCGIPQDKLDSI 796 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + L + ++ E + L Sbjct: 797 FGRFVKLNSFAQGTGLGLSICRTLINHMGGKIGVESEEGKGSTFWFTLP 845 >gi|127512372|ref|YP_001093569.1| integral membrane sensor signal transduction histidine kinase [Shewanella loihica PV-4] gi|126637667|gb|ABO23310.1| integral membrane sensor signal transduction histidine kinase [Shewanella loihica PV-4] Length = 607 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 60/231 (25%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + + L + L + I H+I P+ AI + + L D+V I Sbjct: 373 LKEAQDELIQAAKLTVIGSLSASINHEINQPLAAIRSYAQNTQTLLSRAKWDDVSSNIMT 432 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + +T + + V + + ++ T Sbjct: 433 IIELTDRLAAIVSQFKSFTRKSQGNDKAISVAQCIRDALTIVQPEVDKQGIDLVLNNTEC 492 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLKINGNLARFPEK 163 + L + ++ L + ++ +++ G + Sbjct: 493 QTLLWGDPIRLQQVLINLMSNAMVAMRANNPKQLIIGVVVSNRLEITIEDTGTGIDESQ- 551 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D S+ + + + ++ + L Sbjct: 552 MQKIFDPYYTSSRQGLGLGLSISRRIVEAMQGKISVANRQQGGAIFQITLP 602 >gi|116623412|ref|YP_825568.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226574|gb|ABJ85283.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 610 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 A+ I + + + S + H+ SP+ +I + E+L+ + Sbjct: 368 ARAIRREMEVSRMQSDFVSAVSHEFRSPLTSIRHLSEILELGRVPSEERRQVYYSTLVRE 427 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + ++ + ++ + + + +A +R+++S Sbjct: 428 TRRLQRLVEALLNFGRMEAGARPYRFEECEASALIHRVAGEFDAELAAGRRLELSGPERA 487 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + + + L A P G V + + ++ G E+ Sbjct: 488 CAVDGDPDALSVALRNVIDNAFKYSPDGPTVWVEWRVENARVAIQVRDQGLGITAAERRA 547 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + E LL Sbjct: 548 IFRKFVRGSAAAAANVKGSGVGLAMVRHIVAAHRGEIRLESEPGSGSTFVILLP 601 >gi|295083878|emb|CBK65401.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 541 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI E++ + E+E + +++ S + Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEEKQEFVKIISSNN 363 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 I+ L+ + +T + + L + VQ+ + Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQ 423 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164 +++++N A +G + ++ F +K G +K Sbjct: 424 CIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGI-PADKI 482 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V S I + ++ + E + + + Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPR 535 >gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 713 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 20/228 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI LL E + + L + Sbjct: 339 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDEIELRQAYMSLVQENNE 396 Query: 62 IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------TG 106 + + ++ G+++ G D+ Q+ + IA + Sbjct: 397 LLLNLISDILDISKIEAGTIELTTGWVDVPQLCREVIATFSHKKHDGAVELRFDESSPQI 456 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L N A +G + + F + G E+ Sbjct: 457 VIDADKNRIMQVLSNFMTNALKFTTKGSITLSYTLNDDGQVRFCVTDTGKGI-PAEQCHD 515 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I + V +S + + L ++ E Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVERMGGKIGVESCVGKGSCFWFT 563 >gi|258512528|ref|YP_003185962.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479254|gb|ACV59573.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 429 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 59/224 (26%), Gaps = 20/224 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM 67 + + + + H++ +PI AI E L + ++ ++ I S+ + + Sbjct: 201 ERMRSDFVANVSHELKTPIAAIRGFAETLLDGDVDEEAREKFLRTIYEESLRMGNLVSDL 260 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA 116 + +VD L + + Sbjct: 261 LELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRLHVWAEPDLLL 320 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIV--DGN 171 ++ LNL A P +V ++ + +K NG P F + + Sbjct: 321 QVFLNLLTNAIHYSPPKSRVCVTWDVLVDRVKVHVKDNGIGIPKESLPRVFERFYRVHKD 380 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + E + L + Sbjct: 381 RSRASGGTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTLSR 424 >gi|254994023|ref|ZP_05276213.1| sensor histidine kinase [Listeria monocytogenes FSL J2-064] Length = 459 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S + + H++ SP+ ++ LL + ++ Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + S+D L E V D W+ + +L+ Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL A P+GG + + + + ++ +G E + Sbjct: 345 NNTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D S + + + + + + L K Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458 >gi|254454308|ref|ZP_05067745.1| phosphate regulon sensor protein [Octadecabacter antarcticus 238] gi|198268714|gb|EDY92984.1| phosphate regulon sensor protein [Octadecabacter antarcticus 238] Length = 357 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 20/239 (8%), Positives = 63/239 (26%), Gaps = 35/239 (14%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + D+ + + H++ +P+ ++ +E L ++ + + ++ + + Sbjct: 109 DANDMRRDFVANVSHELRTPLTSLLGFIETLRGPASEDRAAQTRFLGIMEQEAERMHNLV 168 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLS 112 + + G L + D + + + + Sbjct: 169 EDLMSLNRVEGQARIKPTLQTNLCGLIDDVLAAMKPRADAAGVTLISEQPSGAVSILADR 228 Query: 113 RERAKILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + +++ NL A R T + S+ G+ Sbjct: 229 EQMWQVIANLVENAVKYGTKSGSVGGVVTVRLCAPTHEPALLQTGVRLSVIDQGDGIAAH 288 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + + ++ RL + +A L Sbjct: 289 HI-ARLTHRFYRVDSHRSREVGGTGLGLAIVKHIINRHRGRLRISSVVGQGTEFTAFLP 346 >gi|226225128|ref|YP_002759235.1| two-component sensor histidine kinase [Listeria monocytogenes Clip81459] gi|254854408|ref|ZP_05243756.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503] gi|255519926|ref|ZP_05387163.1| two-component sensor histidine kinase [Listeria monocytogenes FSL J1-175] gi|300766081|ref|ZP_07076049.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017] gi|225877590|emb|CAS06304.1| Putative two-component sensor histidine kinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607808|gb|EEW20416.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503] gi|300513227|gb|EFK40306.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017] Length = 459 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S + + H++ SP+ ++ LL + ++ Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + S+D L E V D W+ + +L+ Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL A P+GG + + + + ++ +G E + Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D S + + + + + + L K Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458 >gi|46908753|ref|YP_015142.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47094035|ref|ZP_00231765.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858] gi|46882025|gb|AAT05319.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47017585|gb|EAL08388.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858] gi|328465185|gb|EGF36453.1| sensor histidine kinase [Listeria monocytogenes 1816] Length = 459 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S + + H++ SP+ ++ LL + ++ Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + S+D L E V D W+ + +L+ Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL A P+GG + + + + ++ +G E + Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D S + + + + + + L K Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458 >gi|332184941|ref|ZP_08386690.1| sensory box protein [Sphingomonas sp. S17] gi|332014665|gb|EGI56721.1| sensory box protein [Sphingomonas sp. S17] Length = 682 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57 + + + L A+ L + HD + + I S++LL E Q + Sbjct: 311 LRQTEEQLRQAQKLEAIGQLTGGVAHDFNNLLTVIRGSIDLLRHADFPSERRQRQIDAIA 370 Query: 58 -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R +D + + +I R+ + Sbjct: 371 DAADRAAKLTAQLLAFARRQPLTPEVIDVGASIMTLTDMIHTLSGAGIRLVIERPETPCF 430 Query: 111 LSRERAKI---LLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPE 162 +R+++ ++N+ + A ++ G +TI + D + ++ G + Sbjct: 431 AHVDRSQLDTAIVNMAVNARDAMAGQGTLTIRISSAIGPDGMEQVRIAITDTGEGI-PSD 489 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + QI + + + V A ++ + + +L Sbjct: 490 RLDQIFEPFFTTKQLGAGTGLGLSQVFGFARQSGGDVQVVSQPGQGATFTLILP 543 >gi|222152393|ref|YP_002561568.1| sensor histidine kinase [Streptococcus uberis 0140J] gi|222113204|emb|CAR40674.1| sensor histidine kinase [Streptococcus uberis 0140J] Length = 351 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 69/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52 +++NI + + + + + H++ +PI ++ +LL E E+ + Sbjct: 115 LSQNINQMANDIKNADRHRSQFIANLSHELKTPISSLVGISDLLLTDSLEKDTRTELTTI 174 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ S+ + + ++ K + + + G Sbjct: 175 LQSESLRLSRLCDDILNLTKLENHLSPQLESVALDEQIRQALIMLTEKWKSKTIHLEFDG 234 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160 E + + ++ +N+ A + + V+ + ++ + ++ G Sbjct: 235 EAVMCQTDPDLTMQVWVNVIDNAIKYSSDQVFLNVDVKQATDKVLVTISDKGIGIAKENQ 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F Q + + + + V + + E L Sbjct: 295 RHIFEQFYQADQSHAQEGNGLGLAIVKKIIDSLNGSIHFESTPGQGSRFYITLP 348 >gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 705 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 60/252 (23%), Gaps = 41/252 (16%) Query: 3 KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 K L A + + H++ +P+ AI E+L E E ++ Sbjct: 421 KTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEILSEEAEELGYEDIVP 480 Query: 55 LSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + ++ G +D + DI ++E + + + Sbjct: 481 DLERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFDISSLLESVMGTAQPLMSKNNNT 540 Query: 108 KIDLSRER-----------AKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENI 148 + +ILLNL A G Q+S + Sbjct: 541 LTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTNGKIKLEVSRVSSLPYSQESGSVLE 600 Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202 F + G E+ Q+ + + E Sbjct: 601 FKVHDTGIGM-SQEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRFCQMMGGNIQVEST 659 Query: 203 DDHNVVLSALLE 214 ++ Sbjct: 660 LGEGSTFKVVIP 671 >gi|196231754|ref|ZP_03130611.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196224226|gb|EDY18739.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 550 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L AL + S I HD + + +I ELL E + ++ I + Sbjct: 162 LRTTQAQVIKQERLAALGVMASGIAHDFNNTLSSILGYGELLLESPDHTDYLKRILSAGH 221 Query: 59 SAIIRLKFMRLAFGYTGS------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 A ++ +R + + V + + + K + Sbjct: 222 DARQIVRRLREFYKVGNTGEPLAAVHLNPLIDQAVTLTMPRWNNQALTWGAHITVKREFR 281 Query: 113 R---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E ++ NL A +LP GG++ I + + +G Sbjct: 282 ELPILAGNPVELRELFTNLIFNAVDALPHGGQILIRTAVEGETIVVRVTDDGLGMDGDTA 341 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +K + E + Sbjct: 342 RRCMEPFFTTKGEQGTGLGLSVAHGIVKRHKGTIHIETEPHVGTTVILRFP 392 >gi|220908951|ref|YP_002484262.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865562|gb|ACL45901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1428 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 ++ ++ + L S I HD+ + + I S +LL G E+++++ ++ Sbjct: 1051 ESQFLRAQRLESIGTLASGIAHDLNNMLTPILVSSQLLQRQLPEGRPQELLKIMEANARR 1110 Query: 60 AIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + + L +I+Q+ E R+ + + +S + Sbjct: 1111 GADLIRQVLTFARGTEGKRMPLQIKHLLTEIQQICERTFPKSIRIALDIPADLAMISVDP 1170 Query: 116 ---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNL 157 ++L+NL + A ++P GG+ + +++ G Sbjct: 1171 TQLHQVLMNLCVNARDAMPEGGQLNLRAADFYADQTYRQMNLEAQVGAYVVITVEDTGMG 1230 Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + V + + + L Sbjct: 1231 M-DSDVLERIFDPFFTTKGVGQGTGLGLSVVQGIIRSHSGFIKVNSSIGQGTQFQVYLP 1288 >gi|165871419|ref|ZP_02216067.1| putative sensor histidine kinase [Bacillus anthracis str. A0488] gi|227812951|ref|YP_002812960.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|254756049|ref|ZP_05208078.1| putative sensor histidine kinase [Bacillus anthracis str. Vollum] gi|164712903|gb|EDR18432.1| putative sensor histidine kinase [Bacillus anthracis str. A0488] gi|227005510|gb|ACP15253.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684] Length = 337 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 95 LEKVRIKANRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L D I + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E I + K Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 331 >gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 1269 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 30/239 (12%) Query: 4 NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53 + ++L + + H+I +P+ I E L + ++LI Sbjct: 578 ELARRTEQLELANKYKSEFLANTSHEIRTPLNGIIGLTESLIDGAAGPLNEKTMSNLELI 637 Query: 54 RLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103 S++ + + + D +++ + V + + Sbjct: 638 NSSAIRLSTLVNDILDFSRMENHELGIQRKPTDFYAIVDVVVRVSRELIGDKDLVLVNTI 697 Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +IL NL G+VT+S + + S+K G P Sbjct: 698 GKDIPIIEGDENRLQQILYNLIGNGIKFTES-GQVTLSAKTTDAFLSVSVKDTGIGI-SP 755 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + L + + + L Sbjct: 756 ESQDRIFESFEQEDGSTSRNYGGTGLGLAISKELVELHGGTIQLKSEVGKGSEFIFTLP 814 >gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 1109 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 58/246 (23%), Gaps = 35/246 (14%) Query: 2 AKNICFNLSSMDL---VALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L L A L + + H+I +P+ + LL + E Q + Sbjct: 848 RKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTHLLRTTDLTPEQEQYL 907 Query: 54 RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 +SA + S I + + I V Sbjct: 908 ANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCIQDILSSQQFFIQQKAIRVT 967 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153 + I +ILLN+ A +G + D +++ Sbjct: 968 TEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQGQINIVAELVEQHDRDIHVRMAIRD 1027 Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + QI + LA R+ E + Sbjct: 1028 TGIGM-SEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRRLADLMGGRIWVESREGAGS 1086 Query: 208 VLSALL 213 L Sbjct: 1087 CFYIEL 1092 >gi|255025902|ref|ZP_05297888.1| hypothetical protein LmonocytFSL_05345 [Listeria monocytogenes FSL J2-003] Length = 459 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 64/232 (27%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+ G + I + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISKVDMTKIFD 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458 >gi|227822197|ref|YP_002826168.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227341197|gb|ACP25415.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 861 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60 +N M+ V L I HD + + AI S + LL + L+ + + Sbjct: 457 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 516 Query: 61 II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R ++ +GD+ +++ + +V+V + + + + Sbjct: 517 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVRTD 576 Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156 ++LLNL + A ++P GG +T+ ++ + + + G Sbjct: 577 LGQFEQVLLNLAVNARDAMPDGGTITLRTRNLPAGDVAPLGRRELPEDDFVMVEVSDQGT 636 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + ++ + P+ LL Sbjct: 637 GI-PAEIMDKIFEPFFTTKEVGKGTGLGLSMVYGIVKQSGGYIYPDSEVGKGTTFRILLP 695 Query: 215 K 215 + Sbjct: 696 R 696 >gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] Length = 675 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL ++ + + + + Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 344 Query: 62 I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + ++ +G V I + + + + +A K++ + Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYPPVP 404 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG + + VQ + +++ G P Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQALPEGLVATVRDTGIGIEPTFLPHV 464 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 F + + + L + R+ + ++ L Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASNGANLGTTMAVTLP 518 >gi|160887157|ref|ZP_02068160.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483] gi|156107568|gb|EDO09313.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483] Length = 654 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 64/231 (27%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + + + L + + + H+I +P+ AI +L + E LI ++ Sbjct: 421 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGLSNMLPHVENREEMSEYADLIETNT 480 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105 + + Y +D L +IEQ ++ + + V+ Sbjct: 481 DLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTFTFVERLPE 540 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N + A G F + G E+ Sbjct: 541 CTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCGM-SSEQCI 599 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + ++ E ++ L Sbjct: 600 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGATFWFTLP 650 >gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 771 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 22/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 A+ M L + + + H+I +P+ AI +LL+ E + E + LI + Sbjct: 532 ARRKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 589 Query: 57 SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + + M ++ + + Q++ K Sbjct: 590 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 649 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ N A + ++ + + S+K G +K Sbjct: 650 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 708 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + H + E + + L Sbjct: 709 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSMFTISLP 760 >gi|59712226|ref|YP_205002.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Vibrio fischeri ES114] gi|59480327|gb|AAW86114.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Vibrio fischeri ES114] Length = 972 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 56/235 (23%), Gaps = 26/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+++ + L + + H+I +P+ + + ELL G+ + Q + + + S Sbjct: 459 ARDLAEQANRAKSAFL--ATMSHEIRTPLNGVLGTGELLRGSGLTAQQKQYVDIINRSGE 516 Query: 62 ------------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + D Q + I + V V Sbjct: 517 NLLDLLNDILDYSKIEAGHLSIRKKNFSVQSMITDVHHLFSSRAQ--QKGITLSVNVPVD 574 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L N A G +F + G E Sbjct: 575 TPEWWSGDCSRIRQVLNNFVGNAIKFTHTGSVTIQLSLILDTTLLFEVIDTGVGIAEHEI 634 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + L + E I+ LE Sbjct: 635 DTLFDVFTQAEEGMKVSGGTGLGLAISQRLIEAMDGEIGVESIEGQGSTFWFSLE 689 >gi|78484534|ref|YP_390459.1| periplasmic sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] gi|78362820|gb|ABB40785.1| multi-sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] Length = 725 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIED------------- 47 ++I + + A + R+ H+I +P+ I S E L+ + Sbjct: 490 EDITQLVQAQLHAAWSDVAQRLAHEIKNPLTPIQLSAERLNYKLADKLISSDRRLLNRMT 549 Query: 48 -EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 +++ + ++ ++ + D+ + +D A K + Sbjct: 550 ETIIEQVAAMQNLVQAFTEYADTPEIELSQLNLNSLIKDVVSMYKDPNANWKVSYKTDPQ 609 Query: 107 EKIDLSR--ERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++L NL A + + + S++ FS+ NG Sbjct: 610 CPKITADASKLRQLLHNLIKNAIEACGERPETHIDVRTDCSQDAINFSICDNGPGIPEKA 669 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + V + E++ ++ E + L Sbjct: 670 RNW-IFEPYSTDKPKGTGLGLAIVKKIVDEHQGQIHVESEPEQGTCFIINLP 720 >gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125] Length = 1019 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 + + I L++ + + I H+I +P+ + LE+L E + ++L S+ Sbjct: 501 LERAIDEALAASQAKSDFVANISHEIRTPMNGVLGMLEMLKEDGLSEQQHHYLKLANSSA 560 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104 S + + + + V + + + ++ + Sbjct: 561 NSLMNLINDILDFSKIEAGKLDIDNHSFDVVTVCSDMINSLALQGQRKGLEVFLHTHNIV 620 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARF 160 + S +IL+NL A +G + + D+K + F++K G Sbjct: 621 DRMVVGDSHRLKQILINLVNNAFKFTHKGEVSLTIGSKYITDTKLQMSFAVKDTGIGI-A 679 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E ++ + + LA + +A Sbjct: 680 AENIDKLFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNISLTSEKGVGSTFTAT 737 >gi|95929470|ref|ZP_01312213.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134586|gb|EAT16242.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 839 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54 + + + + L + + H+I +P+ I L+ L + + ++ + Sbjct: 605 RTRLARMDRLASLGRLAAGLAHEIRNPLTGISLLLDDLHDRLLHTPKDQELIRRALEEME 664 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110 LKF R++ D + + E V + Sbjct: 665 RLEGLVGDLLKFSRVSASECHPGDVRAVVERTLGLFEQSCERSGISLVRDYAETLPQIAL 724 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LLNL A ++ GG +T+S+ + + + G E+ I + Sbjct: 725 DEQRMQQALLNLLRNAQEAMAEGGTLTVSLLANPEQVCVRVCDTGVGM-DDEQRRLIFEP 783 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + E+ R+ Sbjct: 784 FYTCKKEGNGLGLAIVHNIVAEHDGRIEVTSAPGQGSCFELCFP 827 >gi|260553331|ref|ZP_05825945.1| two-component sensor [Acinetobacter sp. RUH2624] gi|260405168|gb|EEW98666.1| two-component sensor [Acinetobacter sp. RUH2624] Length = 452 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78 I H++ +P+ + +E D+ I + + + + Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ +A+ K Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445 >gi|237728172|ref|ZP_04558653.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226910183|gb|EEH96101.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 754 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 71/232 (30%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SL+L++ + + ++ Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLDLVNPESPDAPRVNRALKAAERGAL 445 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 446 LTQRLLAFSRKQSLHPHAVELKTLLENLGELMRHSLPATLTLEIEAQSPAWPAWIDVSQL 505 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + + G+ E Sbjct: 506 ENAIINLVMNARDAMDGQAGTIKIRTWNQRVTRSDGRKQDMVMLEVADQGSGM-SQEVKA 564 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|220933386|ref|YP_002512285.1| PAS/PAC sensor signal transduction histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219994696|gb|ACL71298.1| PAS/PAC sensor signal transduction histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 734 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 62/233 (26%), Gaps = 23/233 (9%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE--------------VGIED 47 ++ L + A + R+ H+I +P+ I S E L Sbjct: 486 DVTALLQAQRDAAWGEVARRLAHEIKNPLTPIQLSAERLQRKLKPSLPEDEARVLERSTH 545 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++Q + ++ +D + ++ + + Sbjct: 546 TIVQQVEAMKSMVNAFSEYAHTPAVSVEPLDLNDLVREVADLYAGVGQRLRLHLADRLPP 605 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161 + + ++L NL +L + + ++ NG Sbjct: 606 VLADAGRMRQLLHNLIKNGLEALEGVPEPRLEVDTRCVREARCTVVELRVQDNGRGV-PE 664 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +++ + V S + V + E+ + E + L Sbjct: 665 DFMSRLFEPYVTSKPKGTGLGLAIVKKIVEEHNGMVWAENRASGGARIVIRLP 717 >gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] Length = 1356 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + L L S I H++ +P+ I E L + E+ + + Sbjct: 819 QQKEEIASQAEKLKVLNQVQSNFFSGISHELRTPLTLIVEPAEKLLQYNQEEPGKRYTQT 878 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED------------FIAVDKRVQVS 103 +A L+ + ++ + L + + ++++ Sbjct: 879 ILGNAQRLLRLINQLMDFSKLESGKMTLQLSNNSLYQLLVEVIASFELLAQQKNIELKLT 938 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + + + K+ +F A P G + + + S +E ++ G Sbjct: 939 ASNQALHYKFDHDKVEKVVFNLISNALKFTPTQGNIEVHLWQSPDEVKITVTDTGIGIAP 998 Query: 161 PE---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + I V L ++ + ++ Sbjct: 999 ADLPFVFDRFYQVDGSTTKNYPGTGIGLALVKELVELHEGSIEVTSQENKGSTFVVKFP 1057 >gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 995 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 54/239 (22%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + S + + + H+I +P+ + ELL + E Q + S Sbjct: 608 AKQAAESASRAK--SEFLANMSHEIRTPMNGVLGMAELLAFTDLTAEQEQYLACIKSSGD 665 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + A + + I + + + Sbjct: 666 NLLALINDILDLSKIEAGKIELEYADFSLRKAINDVVTTQISAIHTKRLQFSCDLAEDLP 725 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161 + +ILLNL A G I ++ ++ G + Sbjct: 726 EIVLGDQLRFKQILLNLLSNAIKFTDHGSVSISAELIECHSFQSFVRVTVADTGIGIQ-A 784 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E I + LA + E L Sbjct: 785 EARQTIFAPFTQADSSTTRRFGGTGLGLAISRQLAELMGGDIGLESEPGSGSRFYLDLP 843 >gi|116071025|ref|ZP_01468294.1| adaptive-response sensory kinase [Synechococcus sp. BL107] gi|116066430|gb|EAU72187.1| adaptive-response sensory kinase [Synechococcus sp. BL107] Length = 410 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 67/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 + + + + L + H++ +P+ A +L+ + + +L Sbjct: 159 LRQENETLIDRIHAQERLLRMVAHELRTPLTAAALALQSQRLGQIDMDRFQDVVTRRLEE 218 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 + ++S + + I ++ + ++ + ++ + Sbjct: 219 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIRTDIPSDLPKV 278 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R +++LNL A GG + +S+ + S+ +G E+ Sbjct: 279 FADQRRMRQVMLNLLENALKYTGNGGHIALSMLHRTNQWVEVSVCDSGPGIPNEEQQRIF 338 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + R+ + + + Sbjct: 339 LDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVSEPEEGACFTFTVP 389 >gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 542 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 63/244 (25%), Gaps = 32/244 (13%) Query: 3 KNICFNLSSMDL--------VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + NL + L S + H++ +P+ I +LL E + +R Sbjct: 149 RTSYKNLEAAKLLQEHANRAKTQFLSNMSHELRTPLNVIIGYTDLLSEQLPGKLNEKQLR 208 Query: 55 LSSMSA----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L ++ G + + ++ + ++ + Sbjct: 209 YIGEINSSGKFLLSLINDLLDMSKIDAGAMELELEDVSIDELINGMVSMMSRQFVKKKIK 268 Query: 105 TGEK--------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKING 155 + R+ +IL+NL A P+ G+V I + ++ G Sbjct: 269 VKIIIEPELSVVMADLRKCKQILMNLLTNALKFTPKDGRVEICAVSDGDSGVKIEVRDTG 328 Query: 156 NLARFPEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + I L + ++ E Sbjct: 329 IGIAEDKIDKIFSEFYQAENVIDEQLGGTGIGLALTRRLVELHDGKIGVESKLGKGSTFW 388 Query: 211 ALLE 214 L Sbjct: 389 FTLP 392 >gi|302036924|ref|YP_003797246.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604988|emb|CBK41321.1| putative Histidine kinase, contains GAF domain [Candidatus Nitrospira defluvii] Length = 426 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 + ++ + L +L + H+I +P+ +I ++L + + ++ Sbjct: 176 LRRSSTLMRRTDRLRSLEIMAGGFAHEIRNPLTSIKTFIQLAPQRQQDPVFIREFSQVAI 235 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 L + VD + V R++ + + Sbjct: 236 EDVHRIERLLHEILDYASYMTPQPSDVDLNELVTSCLGFVSSTASHRGIRLRTTLAPQLP 295 Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARF 160 ++ ++LLNL + A ++P G V ++ G Sbjct: 296 TLSLDRQQIKQVLLNLLLNALDAMPNGNGVIQIRTRMLPLTGRTPWVQLEVEDEGCGI-A 354 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ I D + D + + E+ LL E S L Sbjct: 355 PDHLEHIFDPFFTTKHTNSASDGSGLGLTTAHQIVREHGGTLLVESRVGAGSTFSVNLP 413 >gi|149917104|ref|ZP_01905604.1| serine/threonine kinase with two-component sensor domain [Plesiocystis pacifica SIR-1] gi|149822020|gb|EDM81413.1| serine/threonine kinase with two-component sensor domain [Plesiocystis pacifica SIR-1] Length = 1824 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 30/242 (12%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 K + + + L +L L + + H+I +PI + EL+ + + Sbjct: 1571 RKRLEQQVRQNQRLESLGTLAAGVAHEINNPIQGVMGYAELILDEARGQPAITEFATEIT 1630 Query: 57 ------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI- 109 L F R + + D + + V+++ Sbjct: 1631 GESKRVMHIVRDLLTFSRQEREPDHERIAPQRIIDSTLPLVRTLMRKDGVELTVDVSPEL 1690 Query: 110 ----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----------KNENIFSLKIN 154 ++ ++++NL A +L + + F ++ Sbjct: 1691 PALSCHPQQIRQVIMNLLTNARDALNDRFGGEHPDKRITIRAAEVDEGGRRWIRFEVEDR 1750 Query: 155 GNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G +I D + + +A E+ +L + L Sbjct: 1751 GGGI-PDAVRDRIFDPFFTTKPRDRGTGLGLSVSHGIAVEHGGQLGLDSEPGVGTTFHLL 1809 Query: 213 LE 214 L Sbjct: 1810 LP 1811 >gi|187921316|ref|YP_001890348.1| integral membrane sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] gi|187719754|gb|ACD20977.1| integral membrane sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] Length = 658 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 70/232 (30%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEV------M 50 + N + L + + H+I P+GAI ++ + +L ++ Sbjct: 394 LRSNELARAARFASAGELSASVAHEIGQPLGAILSNADAAGLMLRNEPEDELHAILADIR 453 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKI 109 + ++ ++ +D + ++ + V+ ++ + Sbjct: 454 RDALRANQVVQRLRALLQKRTFEYVPLDLNGAFDEGLALLNLEARRRRIAVESNFAAQNA 513 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLARFPE 162 + +R ++ L + ++ + IS Q + + +G+ + Sbjct: 514 CVLGDRVQLQQVLINLVINAMDAMEETPLGERIVSISTQLAGKGYQLIVADSGHG-FPAD 572 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + V + + ++ D V + L Sbjct: 573 AGERMFDSLYTTKPHGMGLGLSIVRTIVSTHGGQVRGASRDGGGSVFTVWLP 624 >gi|303247129|ref|ZP_07333404.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491555|gb|EFL51440.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 648 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 68/244 (27%), Gaps = 32/244 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + + M+++ L S I HD+ + +G I EL L+ + E ++ I + Sbjct: 262 EKQLRHAQKMEVIGTLASGIAHDLRNILGPIILHAELCLERLEAGDPQAESLREIVEAVG 321 Query: 59 SAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 A + + + + + + + + +++ + ++ Sbjct: 322 RARALGEQLLSLGRSVESDTPVRFRLSTLVKECLKFLAPGLPPGLSIRLRIEAARSEMRG 381 Query: 114 ER---AKILLNLFMVAHASLPRG-----------------GKVTISVQDSKNENIFSLKI 153 + ++++NL A ++ S + Sbjct: 382 DPTRGHQVIMNLLTNAIEAMKDQEGGLLTVRIEDAVVTEGDWSEESSLPPGAYLRLCVSD 441 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + +I + + + + + + + + E Sbjct: 442 TGQGM-TSDVMKRIFEPFFSTKREGHGTGLGLTVARHIVTQMRGAISVESHPGLGTSFRV 500 Query: 212 LLEK 215 L K Sbjct: 501 LFPK 504 >gi|297570337|ref|YP_003691681.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926252|gb|ADH87062.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 533 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 67/231 (29%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L ++ L S + H+I++P+ I ++++ + + + + + + Sbjct: 279 LRSAQNVLVRQEKLASIGTLASGVAHEILNPLNIIGTIVQVMQMEELPEIISEQLDEVMV 338 Query: 59 SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGE 107 F +D L + ++++ ++ Sbjct: 339 QIRRATKITNSLRMFSHRGKAEIEELDIHALLDNTLELVKHSLADDHIEVEKKYTPGLPA 398 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFT 165 + A++LLNL A ++ + + + + ++ G PE Sbjct: 399 IAADPDQLAQVLLNLINNARDAMRGRPTRRLSLTTRRVEQGVGLTVSDTGWGI-APEHLH 457 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + + +L Sbjct: 458 KIFDPFFTTKDPGSGTGMGLAVVYSIVEGMGGMIEVASRPGRGTDFFMVLP 508 >gi|253701498|ref|YP_003022687.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776348|gb|ACT18929.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 849 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + M+ V L + HD + + I + EL L E D +++I ++ Sbjct: 469 EEQYRQSQKMESVGRLAGGVAHDFNNMLSVILGAAELSRRKLKEGEQIDAYLEVITNAAK 528 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R +D + + +++ I+ D + + +S + Sbjct: 529 RSSEITRQLLAFSRKEVVSPRPLDLNQLILESNKILARLISEDIELSFTPDPGLWTVSID 588 Query: 115 RAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156 +++ L A ++P S + ++ G Sbjct: 589 PSQVDQILMNLAVNARDAMPNGGRLSIETRNLRLTGDCSQIHPDAHSGDYVQLTVSDTGQ 648 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + +N+ + V L Sbjct: 649 GMDKATV-EHIFEPFFTTKELGKGTGLGLATVYGIVTQNRGFINVYSEPGQGTVFRINLP 707 Query: 215 K 215 + Sbjct: 708 R 708 >gi|229080731|ref|ZP_04213249.1| hypothetical protein bcere0023_33750 [Bacillus cereus Rock4-2] gi|228702465|gb|EEL54933.1| hypothetical protein bcere0023_33750 [Bacillus cereus Rock4-2] Length = 382 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58 K + + L + I H+I +P+ +H +LL+E +D+ ++++ + Sbjct: 160 KEKLQRAEKFYIASELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 219 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111 + ++ I + I ++D V+ + + + Sbjct: 220 QIQSTINNYLSLTKPQNTLKEKIDINHILNQVKDTISPLALSYKVEIKQNSTDSFYINGD 279 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + L N+ ++ GG + I++Q K + + +G + +I Sbjct: 280 PEKFKLCLNNIIQNGIEAMKNGGLLQINIQKVKGNIMIDIIDSGIGMSSQQIK-RIALPF 338 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 339 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 381 >gi|229104177|ref|ZP_04234849.1| hypothetical protein bcere0019_33250 [Bacillus cereus Rock3-28] gi|228679194|gb|EEL33399.1| hypothetical protein bcere0019_33250 [Bacillus cereus Rock3-28] Length = 516 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ I + + K D+ Sbjct: 341 ISQMESITSQFMAMSKPQVLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDI 400 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167 + ++ + ++ N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|229188542|ref|ZP_04315582.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876] gi|228594936|gb|EEK52715.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876] Length = 314 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + + S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ E + G + Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E + K Sbjct: 252 QNIFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308 >gi|220904125|ref|YP_002479437.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868424|gb|ACL48759.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 528 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54 M KN + V++ + + I H+I +P+G I +S ELL + +++ Sbjct: 291 MNKNRQLEKQLHSNERFVSMGRVIASIAHEIRNPLGIIRSSAELLQRRSDADAGTRRILG 350 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSW 104 ++ + + Y L D + V Sbjct: 351 AIFDESVRLSQTVNDFLDYARPRQPKQDLVDISLVLDQVLGFLEGDMGRRNVALERNTEE 410 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163 + N+ + ++ G + IS +G Sbjct: 411 GLFVHGDKDLLYRAFYNILVNGQQAMDGPGVLHISGVHDGEGHVRLEFLDSGPGFDAS-V 469 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++D + + V + + + E + ++ LL Sbjct: 470 LANLLDPFFTTKDGGTGLGLPIVQSIITSHGGVIQLENGPEGGALVRVLLP 520 >gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 678 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + + + L + + H++ +P+ I ELL +E + + +I Sbjct: 282 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHTTYKGLSVI 341 Query: 54 RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101 S+ + + M + L E E + + Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILELHV 401 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +++ NL A P G++ +S++ + S+ +G+ Sbjct: 402 PPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 461 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + DG + V L + ++ + L Sbjct: 462 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520 >gi|78042982|ref|YP_359782.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995097|gb|ABB13996.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 406 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 19/211 (9%), Positives = 55/211 (26%), Gaps = 15/211 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H+I +P+ + ++LL + + + + + + Sbjct: 181 IATGTAHEIRNPLTTVKGFIQLLGQEKLNDPESKVFLNTVLQEINRIEKIISELLILGSD 240 Query: 74 TGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF---MV 125 G + L + + + + E + + L + Sbjct: 241 KGLKKTFFNLNYLIEKVVENFTPTAYLNNISIVKNLAKELPLFYGDEESLYLAITSILNN 300 Query: 126 AHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 A +L + + + NE + NG E ++I + + + + Sbjct: 301 AFEALQKDGVIVIETFYEHGSNEIGLRIADNGPGI-PEELRSKIFEPFFTTKPEGTGLGL 359 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ + + L Sbjct: 360 AICYRTIEEHGGEIRVYNNETGGATFEITLP 390 >gi|83952335|ref|ZP_00961066.1| putative two-component sensor histidine kinase protein [Roseovarius nubinhibens ISM] gi|83836008|gb|EAP75306.1| putative two-component sensor histidine kinase protein [Roseovarius nubinhibens ISM] Length = 623 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 73/234 (31%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEV----- 49 + + + + L AL + + + H+ P+ A+ E L++ E+ Sbjct: 376 LRRTQSELVQAGKLAALGQMSAGLSHEFNQPLAAVKAYAENALTLMERGRQEEARSNMGL 435 Query: 50 -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104 +Q+ + + F R G V + L D+ ++++ I + Sbjct: 436 ILQMADRMAAISRHLRNFARRPQEKIGPVPLIPVLEDVLSLMDNRIKAAEARITIDRPEG 495 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFP 161 + ++L+NL A ++ I ++ + I ++ +G Sbjct: 496 DIFVMGGQVRLQQVLVNLLANALDAMETQPAPEIGIRVAGLDSGRWIVEVRDHGEGL-TD 554 Query: 162 EKFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + Q+ D + + + + L + + + L Sbjct: 555 DTMAQLFDPFFTTKSPGKGLGLGLSISYNIVRDFGGTLSARNHPEGGAIFAVEL 608 >gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102] gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] Length = 574 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 20/247 (8%), Positives = 67/247 (27%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53 + + ++ ++ + + H++ +P+ A+ +LL++ + ++ I Sbjct: 324 LQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLEDDATDLGLSADFITDLETI 383 Query: 54 RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSW 104 + + + Y + + + ++ ++ I + V +V + Sbjct: 384 NSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIATLINNVVLTVKPAIEKNANVLEVHF 443 Query: 105 TGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKI 153 + ++LLNL A G ++ + F++ Sbjct: 444 DEQLGTMYADQTRMRQVLLNLLSNASKFTTNGKVTLTVKREKEELRLDAPLGMITFTVTD 503 Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + Q+ + ++ + Sbjct: 504 TGIGMSNRQ-QQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQPGLGS 562 Query: 208 VLSALLE 214 + L Sbjct: 563 TFTIRLP 569 >gi|328952707|ref|YP_004370041.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453031|gb|AEB08860.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 759 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 25/235 (10%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----------EVGIEDEVM 50 + L + +L L + + H+I +P+ I N ++L+ E E + Sbjct: 520 SRARMLHDDKMTSLGKLSASVVHEINNPMTGIMNLVKLMQRIMGKGLLSETESAKMHEYL 579 Query: 51 QLIRLSSMSAI----IRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWT 105 LI + L F R V + + V + Sbjct: 580 DLIYGETSRVSKTVSNLLAFSRKTSPEFKPVGLNALLTETLTLTEYQLRLQGITVNCQFD 639 Query: 106 GEKID---LSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFP 161 + + + ++ LNL + A ++P GG +T + + + + G Sbjct: 640 PDLMPVLADPEQMKQVFLNLILNARDAMPDGGVLTLKTKNYRRPGVMVQIADTGIGI-PK 698 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 EK++ I + + + V + E+K + + I + L Sbjct: 699 EKYSSIFEPFYTTKKAGSGAGLGLSVVYGIIQEHKGTIKVDSIVGQGTTFTIRLP 753 >gi|326409060|gb|ADZ66125.1| sensory box histidine kinase/response regulator [Brucella melitensis M28] gi|326538767|gb|ADZ86982.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 906 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755 Query: 215 K 215 + Sbjct: 756 R 756 >gi|306838397|ref|ZP_07471242.1| PAS domain-containing protein [Brucella sp. NF 2653] gi|306406537|gb|EFM62771.1| PAS domain-containing protein [Brucella sp. NF 2653] Length = 857 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 588 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 647 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706 Query: 215 K 215 + Sbjct: 707 R 707 >gi|306840523|ref|ZP_07473282.1| PAS domain-containing protein [Brucella sp. BO2] gi|306289538|gb|EFM60756.1| PAS domain-containing protein [Brucella sp. BO2] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|306843910|ref|ZP_07476505.1| PAS domain-containing protein [Brucella sp. BO1] gi|306275665|gb|EFM57389.1| PAS domain-containing protein [Brucella sp. BO1] Length = 857 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 588 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 647 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706 Query: 215 K 215 + Sbjct: 707 R 707 >gi|297248360|ref|ZP_06932078.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 5 str. B3196] gi|297175529|gb|EFH34876.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 5 str. B3196] Length = 945 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 556 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 615 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 616 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 675 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 676 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 735 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 736 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 794 Query: 215 K 215 + Sbjct: 795 R 795 >gi|294852372|ref|ZP_06793045.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026] gi|294820961|gb|EFG37960.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026] Length = 843 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 454 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 513 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 514 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 573 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 574 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 633 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 634 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 692 Query: 215 K 215 + Sbjct: 693 R 693 >gi|268611926|ref|ZP_06145653.1| two-component system, OmpR family, sensor histidine kinase KdpD [Ruminococcus flavefaciens FD-1] Length = 371 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 73/235 (31%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + L A + I HD+ +P+ +I + + LDE + + Sbjct: 130 KEEAALLAQNEQLRANMLRSISHDLRTPLTSISGNASTLLSGGDTLDESARQQIYTDIYS 189 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105 S + + G + I + ++ ++++ + +R + Sbjct: 190 ESMWLIGMVENLLYATRIEDGRMQLNISVEILDDIVQEAVRHTERTHSKRNIIVDMLDEI 249 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++NL A VT+SV+ + S+ +G E+ Sbjct: 250 IPVMADANLIVQVIVNLMDNAVKYSDDDSDVTVSVRREHAYAVISVSDHGTGI-SDEEKE 308 Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D S + + + + + V+S L Sbjct: 309 KVFDMFYTGGSRSSDSRRSLGLGLALCRSIISSHGGTISVSDNIPNGTVVSFTLP 363 >gi|265984104|ref|ZP_06096839.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13] gi|264662696|gb|EEZ32957.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13] Length = 911 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 522 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 581 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 582 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 641 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 642 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 701 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 702 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 760 Query: 215 K 215 + Sbjct: 761 R 761 >gi|265988706|ref|ZP_06101263.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M292/94/1] gi|264660903|gb|EEZ31164.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M292/94/1] Length = 891 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740 Query: 215 K 215 + Sbjct: 741 R 741 >gi|261752341|ref|ZP_05996050.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513] gi|261742094|gb|EEY30020.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513] Length = 906 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755 Query: 215 K 215 + Sbjct: 756 R 756 >gi|261758225|ref|ZP_06001934.1| sensory box histidine kinase/response regulator [Brucella sp. F5/99] gi|261738209|gb|EEY26205.1| sensory box histidine kinase/response regulator [Brucella sp. F5/99] Length = 891 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740 Query: 215 K 215 + Sbjct: 741 R 741 >gi|261314235|ref|ZP_05953432.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M163/99/10] gi|261303261|gb|EEY06758.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis M163/99/10] Length = 857 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 588 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 647 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706 Query: 215 K 215 + Sbjct: 707 R 707 >gi|261317672|ref|ZP_05956869.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis B2/94] gi|261296895|gb|EEY00392.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis B2/94] Length = 657 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 268 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 327 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 328 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 387 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 388 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 447 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 448 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 506 Query: 215 K 215 + Sbjct: 507 R 507 >gi|261218622|ref|ZP_05932903.1| multi-sensor hybrid histidine kinase [Brucella ceti M13/05/1] gi|260923711|gb|EEX90279.1| multi-sensor hybrid histidine kinase [Brucella ceti M13/05/1] Length = 657 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 268 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 327 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 328 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 387 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 388 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 447 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 448 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 506 Query: 215 K 215 + Sbjct: 507 R 507 >gi|261214026|ref|ZP_05928307.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915633|gb|EEX82494.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 906 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755 Query: 215 K 215 + Sbjct: 756 R 756 >gi|260754774|ref|ZP_05867122.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str. 870] gi|260883793|ref|ZP_05895407.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str. C68] gi|260674882|gb|EEX61703.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str. 870] gi|260873321|gb|EEX80390.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str. C68] Length = 906 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755 Query: 215 K 215 + Sbjct: 756 R 756 >gi|260757997|ref|ZP_05870345.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str. 292] gi|261222207|ref|ZP_05936488.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94] gi|261321880|ref|ZP_05961077.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1] gi|261755000|ref|ZP_05998709.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686] gi|265991120|ref|ZP_06103677.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|260668315|gb|EEX55255.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str. 292] gi|260920791|gb|EEX87444.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94] gi|261294570|gb|EEX98066.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1] gi|261744753|gb|EEY32679.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686] gi|263001904|gb|EEZ14479.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1 str. Rev.1] Length = 891 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740 Query: 215 K 215 + Sbjct: 741 R 741 >gi|260168745|ref|ZP_05755556.1| PAS domain-containing protein [Brucella sp. F5/99] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|260566424|ref|ZP_05836894.1| sensory box histidine kinase/response regulator [Brucella suis bv. 4 str. 40] gi|260155942|gb|EEW91022.1| sensory box histidine kinase/response regulator [Brucella suis bv. 4 str. 40] Length = 891 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740 Query: 215 K 215 + Sbjct: 741 R 741 >gi|260545291|ref|ZP_05821032.1| sensory box histidine kinase/response regulator [Brucella abortus NCTC 8038] gi|260564042|ref|ZP_05834528.1| sensory box histidine kinase/response regulator [Brucella melitensis bv. 1 str. 16M] gi|260761820|ref|ZP_05874163.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|261325131|ref|ZP_05964328.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33] gi|265994957|ref|ZP_06107514.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|265998171|ref|ZP_06110728.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1] gi|265999465|ref|ZP_05466499.2| sensory box histidine kinase/response regulator [Brucella melitensis bv. 2 str. 63/9] gi|260096698|gb|EEW80573.1| sensory box histidine kinase/response regulator [Brucella abortus NCTC 8038] gi|260154058|gb|EEW89150.1| sensory box histidine kinase/response regulator [Brucella melitensis bv. 1 str. 16M] gi|260672252|gb|EEX59073.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|261301111|gb|EEY04608.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33] gi|262552639|gb|EEZ08629.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1] gi|262766070|gb|EEZ11859.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263094112|gb|EEZ18034.1| sensory box histidine kinase/response regulator [Brucella melitensis bv. 2 str. 63/9] Length = 906 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755 Query: 215 K 215 + Sbjct: 756 R 756 >gi|256031617|ref|ZP_05445231.1| PAS domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|254719113|ref|ZP_05180924.1| PAS domain-containing protein [Brucella sp. 83/13] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|254716821|ref|ZP_05178632.1| PAS domain-containing protein [Brucella ceti M13/05/1] Length = 664 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 275 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 334 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 335 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 394 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 395 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 454 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 455 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 513 Query: 215 K 215 + Sbjct: 514 R 514 >gi|254710122|ref|ZP_05171933.1| PAS domain-containing protein [Brucella pinnipedialis B2/94] Length = 667 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 278 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 337 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 338 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 397 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 398 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 457 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 458 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 516 Query: 215 K 215 + Sbjct: 517 R 517 >gi|254701787|ref|ZP_05163615.1| PAS domain-containing protein [Brucella suis bv. 5 str. 513] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|254693752|ref|ZP_05155580.1| PAS domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|254689267|ref|ZP_05152521.1| PAS domain-containing protein [Brucella abortus bv. 6 str. 870] gi|256257517|ref|ZP_05463053.1| PAS domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|225627514|ref|ZP_03785551.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|225617519|gb|EEH14564.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] Length = 945 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 556 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 615 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 616 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 675 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 676 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 735 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 736 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 794 Query: 215 K 215 + Sbjct: 795 R 795 >gi|253701693|ref|YP_003022882.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251776543|gb|ACT19124.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 659 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 77/241 (31%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 + + + S + L + S H++ +P+ I ++++L + + + Sbjct: 410 LKEAQAKLIQSEKMATLGEVISGASHELNNPLAGILGAIQMLRKSALAQPIEPELLEGID 469 Query: 50 -MQLIRLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVS 103 ++ I +++ ++F A +D L D +++ F + +V++ Sbjct: 470 VLESIESAAIRCQNIVADLIRFSTQAHCNFSEIDINQVLRDTLEIMAAPFADLGIQVELD 529 Query: 104 WTGEKIDLSRERAK---ILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKING 155 + + K + ++L A +LP GG + + + +++ G Sbjct: 530 SDPAVPLIEGDFVKLLEVYVSLLRNAQNALPDGGTIYLGTKVVKNYGEPPQVAVTIRDTG 589 Query: 156 NLARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + + + + ++ + Sbjct: 590 CGIPPQNLS-KIFDPFFTTKPVGRGPGLGLTVSYGIVKRHGGDIDVRSTVGKGTEVTVTV 648 Query: 214 E 214 Sbjct: 649 P 649 >gi|182415942|ref|YP_001821008.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177843156|gb|ACB77408.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 711 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 29/233 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 M+ + L + I HD + + I + E L+ E+++ + ++ + + Sbjct: 335 QKMEAIGELAAGIAHDFNNMLTVIQGNTSIVRERLERHSPHHELLETVASAAERSAKLVN 394 Query: 66 FMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + L D+ + + + + + + ++ Sbjct: 395 QLLTFSRKQVLEVQPVEAGKLLGTLRDMLSRVIGEQITVRVLPPTASLAISADAGMIEQM 454 Query: 119 LLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L+NL + A ++P + + FS+ NG+ PE Sbjct: 455 LMNLAINARDAMPDGGTLTIGATAVNITPAHAASNPEARPGSFLCFSVADNGHGI-APEV 513 Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + +++ + + L Sbjct: 514 LPRIFDPFFTTKPTGQGTGLGLATVYGIIKQHEGWIEVQSAIGQGTTFRVFLP 566 >gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis C6786] Length = 925 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 59/247 (23%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + + Sbjct: 422 LRKESELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSMRQSER 481 Query: 53 IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---- 97 +++ + L D L DI Sbjct: 482 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAYAPLAESKGLEL 541 Query: 98 -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 V +IL NL A G + + + Sbjct: 542 FSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDSGHISIDVHRAKTGPGNSAIEIWVS 601 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + T D ++ + LA + + + + Sbjct: 602 DTGIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGSIEIDSLPEFGT 661 Query: 208 VLSALLE 214 ++ +L Sbjct: 662 TVTVVLP 668 >gi|163843307|ref|YP_001627711.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|189024203|ref|YP_001934971.1| sensory box histidine kinase/response regulator [Brucella abortus S19] gi|225852542|ref|YP_002732775.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|237815464|ref|ZP_04594462.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|254697403|ref|ZP_05159231.1| PAS domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254704329|ref|ZP_05166157.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686] gi|254706771|ref|ZP_05168599.1| PAS domain-containing protein [Brucella pinnipedialis M163/99/10] gi|254714121|ref|ZP_05175932.1| PAS domain-containing protein [Brucella ceti M644/93/1] gi|254730301|ref|ZP_05188879.1| PAS domain-containing protein [Brucella abortus bv. 4 str. 292] gi|256044696|ref|ZP_05447600.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256061128|ref|ZP_05451282.1| PAS domain-containing protein [Brucella neotomae 5K33] gi|256113590|ref|ZP_05454410.1| PAS domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256159755|ref|ZP_05457502.1| PAS domain-containing protein [Brucella ceti M490/95/1] gi|256255017|ref|ZP_05460553.1| PAS domain-containing protein [Brucella ceti B1/94] gi|163674030|gb|ABY38141.1| PAS domain S-box [Brucella suis ATCC 23445] gi|189019775|gb|ACD72497.1| sensory box histidine kinase/response regulator [Brucella abortus S19] gi|225640907|gb|ACO00821.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|237790301|gb|EEP64511.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|161618989|ref|YP_001592876.1| PAS domain-containing protein [Brucella canis ATCC 23365] gi|161335800|gb|ABX62105.1| PAS domain S-box [Brucella canis ATCC 23365] Length = 898 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747 Query: 215 K 215 + Sbjct: 748 R 748 >gi|23501918|ref|NP_698045.1| sensory box histidine kinase/response regulator [Brucella suis 1330] gi|62289961|ref|YP_221754.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 1 str. 9-941] gi|256369463|ref|YP_003106971.1| sensory box histidine kinase/response regulator [Brucella microti CCM 4915] gi|23347861|gb|AAN29960.1| sensory box histidine kinase/response regulator [Brucella suis 1330] gi|62196093|gb|AAX74393.1| sensory box histidine kinase/response regulator [Brucella abortus bv. 1 str. 9-941] gi|255999623|gb|ACU48022.1| sensory box histidine kinase/response regulator [Brucella microti CCM 4915] Length = 945 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 556 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 615 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 616 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 675 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 676 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 735 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 736 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 794 Query: 215 K 215 + Sbjct: 795 R 795 >gi|17987230|ref|NP_539864.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|17982903|gb|AAL52128.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] Length = 767 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 378 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 437 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 438 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 497 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 498 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 557 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 558 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 616 Query: 215 K 215 + Sbjct: 617 R 617 >gi|56965855|ref|YP_177589.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56912101|dbj|BAD66629.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 612 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 61/220 (27%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ + + LE L + I +++ + + I + + Sbjct: 385 FVANVSHELRTPLTTMKSYLEALADGAMQDEDIAPRFLEVTQKETDRMIRLVNDLLQLSK 444 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------------RERAKILL 120 + L I + V + ++L Sbjct: 445 IDSNDYRLDLHWVELGAFLHSIVERFEMVVKDKNIDFHRHIAKQPTYVKIDTDKMTQVLD 504 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 N+ A P GG VTI++ N+ S+ G E +I + Sbjct: 505 NILSNAIKYSPSGGNVTITLLHQGNKARISIADEGLGI-PAESQDKIFERFYRVDKARAR 563 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + H ++ + + + L Sbjct: 564 NVGGTGLGLAIASEYVHAHEGDIWVHSEYNEGTTIYITLP 603 >gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1545 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 62/241 (25%), Gaps = 26/241 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + H+I +P+ + ELL + ++ + + S Sbjct: 979 LREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSG 1038 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 L + ++ + + D+ ++ RV+ Sbjct: 1039 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRL 1098 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFP 161 I +I+ NL A G VT + + S+ G Sbjct: 1099 ESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTKLTISVTDTGIGIPEE 1158 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214 + + + + L + E + S L Sbjct: 1159 KLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESAEGKGSTFWFSVTLP 1218 Query: 215 K 215 + Sbjct: 1219 R 1219 >gi|242278606|ref|YP_002990735.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121500|gb|ACS79196.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 579 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 81/241 (33%), Gaps = 30/241 (12%) Query: 1 MAKNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDE------------ 42 M ++ L M+ + ++ L + + H+I +P+ I+ LL + Sbjct: 333 MTRSKA--LQQMEHHNRMASIGRLAAGVAHEINNPLAIINEKAGLLKDLFTFSKAYDADE 390 Query: 43 --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKR 99 +G+ D V+ + L F R V + + + ++ Sbjct: 391 RVIGLVDSVIGSVERCGRITKRLLGFSRQTDMEFRPVYPRKVIDTVLSFLDKEAEYRCID 450 Query: 100 VQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKING 155 V V ++ +R ++LLNL A ++ GG + I V+ + +FS+K NG Sbjct: 451 VSVDVDDGIYEVVTDRGKLEQVLLNLINNAFQAMKDGGALWIRVERGDEGQVLFSVKDNG 510 Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I + + + L + + + S +L Sbjct: 511 CGIPESDLK-RIFEPFYSTKKQSGGTGLGLSITYGLVQDLGGEMKVQSQLGKGTEFSFML 569 Query: 214 E 214 Sbjct: 570 P 570 >gi|229058193|ref|ZP_04196581.1| hypothetical protein bcere0026_13080 [Bacillus cereus AH603] gi|228720057|gb|EEL71641.1| hypothetical protein bcere0026_13080 [Bacillus cereus AH603] Length = 423 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L + Q + + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNP-AGTTFTISIP 409 >gi|229196206|ref|ZP_04322955.1| hypothetical protein bcere0001_17650 [Bacillus cereus m1293] gi|228587271|gb|EEK45340.1| hypothetical protein bcere0001_17650 [Bacillus cereus m1293] Length = 346 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + + +I Sbjct: 112 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 168 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ K+ Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELELNLGKV 228 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P GG +TI +++ + ++ +G + Sbjct: 229 HITADQESMSQVWINLIHNSIKFTPSGGTITIQLKEYEKVVEVRIRDSGIGISEEQKQHI 288 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + + + V + ++ + E + + Sbjct: 289 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRI 340 >gi|227329043|ref|ZP_03833067.1| osmolarity sensor protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 452 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54 + S + L+A LL + + HD+ +P+ I + E++ + E + Sbjct: 216 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGKEDDYLAESINKDIEE 275 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ T D +G++ + + S Sbjct: 276 CNAIIEQFLDYLRTGQEMQTEVADLNAIMGEVVASESGYERQIDSEFATGELLVRISSLS 335 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171 + LNL + A KV+ + F ++ +G F V G+ Sbjct: 336 IKRAALNLVVNAARYGNGWIKVSTGREL--QRVWFQVEDDGEGIAPDQLKHLFQPFVRGD 393 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + V + + L + + + A L Sbjct: 394 SARTTSGTGLGLAIVQRIIDAHNGVLDVGSSERGGLCVRAYLP 436 >gi|220906985|ref|YP_002482296.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219863596|gb|ACL43935.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 555 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 67/204 (32%), Gaps = 14/204 (6%) Query: 24 HDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 H++ +PI + LEL+ + + E + L+ ++ + R F + Sbjct: 333 HELRTPITIVRGHLELMGTDPAEQTETLALVMDELDRMSRLVEDLVLLAKAERPDFLHLE 392 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 +V+ + ++ + +++ S T I + + ++NL A Sbjct: 393 TVNLEVLAQELFSKATALANRNWQLESSATAAVILDRQRVTQAVMNLAQNATQHTCATDT 452 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYYVILLA 190 +++ V + + +K G + +I + + + V +A Sbjct: 453 ISLGVATDNGKVLLWVKDTGEGIAPVD-QERIFERFARVAHSRRRSEGAGLGLAIVRAIA 511 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + + + + +L Sbjct: 512 AAHGGEVRLQSQVGIGSTFTVILP 535 >gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] Length = 827 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + ++ A L + H+I +P+ + L++L++ + E +++RL+ S Sbjct: 449 TEALKARRANEAKSAFLA-TMSHEIRTPLNGLLGMLQILNDDIRDLEQRKVLRLALNSGE 507 Query: 62 IRLKFMRL----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 L + + + + + E I + S Sbjct: 508 HLLSILNDILDLAKVESDALALDIHPFKMADIITPVEVTYQGLCSEKGIVFNVDNHCSDD 567 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 S ++LLNL A G F ++ +G ++ Sbjct: 568 CYYCGDSVRIRQVLLNLVGNALKFTKTGHINVCIKALESPFVEFCVEDSGIGI-PQDRMD 626 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VLSALLE 214 I + + L ++ E L Sbjct: 627 SIFNEFEQAEVSTTRQYGGTGLGLAICQKLVTLMNGQISVESGLGKGSQFRFVISLP 683 >gi|156972944|ref|YP_001443851.1| osmolarity sensor protein [Vibrio harveyi ATCC BAA-1116] gi|156524538|gb|ABU69624.1| hypothetical protein VIBHAR_00622 [Vibrio harveyi ATCC BAA-1116] Length = 430 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 65/209 (31%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNLFMVAHA 128 + + + E V+ ++ T + + NL + A Sbjct: 280 VNKESFEQVDINTITSDVATSEGGYEVEIETDLNPTMPAAKGSPIAIKRAVSNLVVNALR 339 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYY 185 K++ V K ++ NG F G+ + + Sbjct: 340 YGNGWVKISTGVTADKQLVWVCVEDNGPGIEQSQIAHLFEPFTRGDTARGSEGTGLGLAI 399 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + + Sbjct: 400 VKRIVSQHSGSVVVRNRSEGGLSAQISFP 428 >gi|146337855|ref|YP_001202903.1| two component sensor protein chvG [Bradyrhizobium sp. ORS278] gi|146190661|emb|CAL74663.1| two component Sensor protein chvG (Histidine kinase sensory protein exoS) [Bradyrhizobium sp. ORS278] Length = 599 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/248 (10%), Positives = 66/248 (26%), Gaps = 37/248 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + ++++ + + H++ +P+ ++ +++E L ++ +I Sbjct: 353 MTDALYNRIEAIEM---FAADVAHELKNPLTSLRSAVETLPLARNDNSRARLLAVIEHDV 409 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------ 103 + + VD L + V + V V Sbjct: 410 KRLDRLISDISDASRLDAELQRQDMTLVDLRRLLNTLTSVANETKKNGTDVAVEVRFEGR 469 Query: 104 ---WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 T +++ NL A + GGKV I+ + ++E + +G R Sbjct: 470 GVNDTFSVPGHDSRLGQVISNLLSNAQSFSAAGGKVRITCRRVRSEIEIMVDDDGPGIRE 529 Query: 161 PEKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HN 206 + + + + R+ E Sbjct: 530 DALQRIFERFYTDRPHQGFGQNSGLGLSISKQIIDAHGGRIWAENRPGPVDAEGNPTVAG 589 Query: 207 VVLSALLE 214 L Sbjct: 590 ARFIVRLP 597 >gi|119509382|ref|ZP_01628531.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414] gi|119465996|gb|EAW46884.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414] Length = 658 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + +L A + +CH +P+ + S LL + + ++ L Sbjct: 416 LNQALEQAKQLSELRARFLAMVCHQFRTPLNIVSFSNSLLKQQVDKHTEQKIQPLLDHIE 475 Query: 61 IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ +D + L DI K + Sbjct: 476 KAIEQISQMLDDTLFFAKAETAKINFEPQPLDLV-NLCDILVAQMHMSMSQKPINFVSQF 534 Query: 107 EKIDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + + NL A P +V + + IF +K G + + Sbjct: 535 YCLMACVDPKLLEPILKNLLENAIKYSPSNMRVDFMLACENGQVIFQVKDKGIGIPYKD- 593 Query: 164 FTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + I + + L + ++ E + +L Sbjct: 594 QQRLFEPFYRGSNVDNIPGTGLGLSIIKTLVDLHGGQVSVESEVAVGTTFTVMLP 648 >gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 944 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 33/230 (14%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74 +L + + H+I +P+ AI LL + + +E + S+ L + ++ Sbjct: 271 SLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVATIRQSSEALLTLLNDVLDFSK 330 Query: 75 ----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119 D + + ++ + + + + ++L Sbjct: 331 IEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGDASRLRQVL 390 Query: 120 LNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 LNL A GG V + + E FS++ G ++ T + Sbjct: 391 LNLVGNALKFTEHGGAVVSVEGLALGGTEGAADWELTFSVQDTGLGI-PDDRRTGLFQPF 449 Query: 172 V------ESTIDSHDIQFYYVILLAHENKIRLLPEII--DDHNVVLSALL 213 + L + E L Sbjct: 450 NQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFTL 499 >gi|91227595|ref|ZP_01261899.1| sensor histidine kinase [Vibrio alginolyticus 12G01] gi|91188488|gb|EAS74781.1| sensor histidine kinase [Vibrio alginolyticus 12G01] Length = 806 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 26/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +S + + + H+I +P+ + + ++L + + DE + +R S Sbjct: 339 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLRTLYDSG 398 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105 + + Y+ + + IE I K V + Sbjct: 399 DHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSHLPT 458 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161 + ++L NL A RG + + I +K G Sbjct: 459 GRWYNNDKARLRQVLFNLLNNAVKFTDRGIVEVELAEKSSKAGTKLILKVKDTGIGI-SK 517 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + V +A +++ E +D + + Sbjct: 518 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVEI 575 >gi|307822840|ref|ZP_07653071.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylobacter tundripaludum SV96] gi|307736444|gb|EFO07290.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylobacter tundripaludum SV96] Length = 635 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 23/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQ 51 N +++ + L+ + S I H++ P+ AI + + L++ + + Q Sbjct: 396 NELAHVTRLGLMGEMASGIAHEVNQPLSAISSYTQVSLNLINAENPDLVNLTEVLYKTQQ 455 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110 + +F++ + + + + + + + + ++ Sbjct: 456 QALRAGRIIHRMREFVKSHAKHRSTAEINSLIHEAVSLCIADLKQNCIKLTFELESNLPP 515 Query: 111 LSRERAKILLNLFM---VAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +I + + +L + S N +K NG Sbjct: 516 IYVDHVQIEQVIINLLRNSIDALKTLPAKQQRQLAIHSRLTLNNSIQVRVKDNGPGL-DT 574 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ +I+ + D + L ++ L +L Sbjct: 575 DQQQRILTPFYTTKADGMGMGLSISRSLIEAHEGTLHFNSQSGKGTTFYFILP 627 >gi|239625415|ref|ZP_04668446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519645|gb|EEQ59511.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 542 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + + L + L + HD+ +P+ +I + +L DE + Sbjct: 301 REEETAMAKAEQLRSNLLRSMSHDLRTPLTSISGNAGVLLKDAGTLDEAHKHRIYSDIYD 360 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEK 108 S + + + G+V + + D + + + V+ G+ Sbjct: 361 DSMWLISLVENLLSITRMEGGAVQLHMETELLEEVIDEAMRHVNRRHENHSIHVTQEGDY 420 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I + +++ NL A P G +TI + + NG E Sbjct: 421 ILACVDAQLIIQVITNLVDNAIKYTPDGSSITIKSYKDNGNAVIEVSDNGPGI-PDESKD 479 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + +K + + L Sbjct: 480 RIFQMFYTTGHKSADGKRGMGLGLPLCRAILNAHKGTIEVLDNTPSGSIFRLTLP 534 >gi|220919484|ref|YP_002494788.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] gi|219957338|gb|ACL67722.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] Length = 363 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 58/220 (26%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAF 71 L + + H+I +P+ + S ELL ++ L R A Sbjct: 141 LAAGLAHEIKNPLAGLQGSAELLAREAEGPAREYAAVIAREAKRVDGLVRELLDLARPAA 200 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAH 127 G V LGD + D+ V + + +++LNL A Sbjct: 201 LQQGPVALHDVLGDALVLARGIPGADRIAFVERYDPSLPPVLGDEEKLMQVVLNLVRNAV 260 Query: 128 ASLPRGGKVTISVQDSKNENIFSL-------------KINGNLARFPEKFTQIVDGNVES 174 ++ ++++ S + + + G ++ S Sbjct: 261 DAVASTAAPRVTIETSVSPLRLRVASGRTRPLARISIQDEGPGIPEAML-QRLFTPFATS 319 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 320 KPHGTGLGLAISRRIVEAHGGRIEVRNRAGGGAEANVYLP 359 >gi|158320114|ref|YP_001512621.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158140313|gb|ABW18625.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 465 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 75/226 (33%), Gaps = 15/226 (6%) Query: 3 KNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K + + L A+ L S I H+I +P+G I + +++ ++E+ + + + Sbjct: 232 KRLEAEVKRGERLAAVGQLASGIAHEIRNPLGIIKTISQTINQDIKDEEIKEGLDIIQHE 291 Query: 60 AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKI 109 L F R +D L ++ V F R + + Sbjct: 292 IDRANKVIKGILDFARPNKIQDCKIDLEKLLNELVMVTRKFAQQQNVDLRFNILKQNKIQ 351 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168 + + +N+ + ++ GGK+ I++++S + S K G E +I Sbjct: 352 GDPDKLKQAFINIILNGIQAMKDGGKLEITLEESDKKWAVISFKDEGEGI-SDELLDKIF 410 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ ++ + L Sbjct: 411 NPFFTTKESGTGLGLSITHSTIEEHNGKIEFNSKLGEGTNVKVYLP 456 >gi|86156536|ref|YP_463321.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773047|gb|ABC79884.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 497 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 A+ L + L L + + H++ + + I + L + ++ IR Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHELGNSLNVIRGYAAVTSRELPDDSPHRSDVEAIRR 314 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 A ++ + + + I + + V + Sbjct: 315 EVTRAAGLIERFLVFARARTVHPLVQPVEPILREAVEVLGPAAAHAKVERAVEVEPGLPE 374 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166 L + + LNL + A ++ G + + + G P+ Sbjct: 375 LLADAELLRQAFLNLGVNAVQAMQDRGGKLTVRALREPGGLVVEFQDTGPGI-DPDAAAH 433 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V A + + L Sbjct: 434 VFEPFFTTKATGTGLGLAIVRQAAEAHGGTVEVAGAPGAGATFRVHLP 481 >gi|313150084|ref|ZP_07812277.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138855|gb|EFR56211.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 534 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 65/229 (28%), Gaps = 25/229 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ L + + H+ +P+ I + +EL+ + + ++K + Sbjct: 1 MNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHAQQMKLLI 58 Query: 69 LAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112 D + + A K + Sbjct: 59 SELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQDVFIWIDD 118 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + K+L NL A +P GK+ I + ++ I ++K +GN E +I D Sbjct: 119 WQMRKVLFNLLSNAFKHVPDKGKINILTSTTPDQVIIAVKDSGNGISKEE-QERIFDRFY 177 Query: 173 ESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ I + + + E + L K Sbjct: 178 QADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 226 >gi|255010868|ref|ZP_05282994.1| putative two-component system, sensor kinase [Bacteroides fragilis 3_1_12] Length = 537 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 76/232 (32%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ + +E + IR+ + + Sbjct: 293 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 352 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L+ + ++ ++ + L + + VQ+ +T ++ Sbjct: 353 ELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQMQQKNQRPGVQILFTEKEPC 412 Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++++NL A G KNE F +K G +K Sbjct: 413 CVINTDRLRLSQVIINLMNNAMKFTAEGSITLGYRLNGQKNELYFFVKDTGIGI-PADKA 471 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V S + + ++ + + + L Sbjct: 472 EKVFERFVKLNSFVKGTGLGLAICRVIIERLGGTIGVDTAVEEGACFWFRLP 523 >gi|229016814|ref|ZP_04173743.1| hypothetical protein bcere0030_13820 [Bacillus cereus AH1273] gi|229023019|ref|ZP_04179535.1| hypothetical protein bcere0029_13640 [Bacillus cereus AH1272] gi|228738267|gb|EEL88747.1| hypothetical protein bcere0029_13640 [Bacillus cereus AH1272] gi|228744466|gb|EEL94539.1| hypothetical protein bcere0030_13820 [Bacillus cereus AH1273] Length = 416 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L + ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQDSVSPSNKELFKSLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L + Q + + + + Sbjct: 246 NSIITKFLAISKTREFTREPFRINTFLREYIQQLLASEVFLHNISIDYDFSTELDGVLVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + I+ N + K NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEEPLSIQITSYRLDNFVRITFKDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKV-SSDHSGTTFTISIP 409 >gi|227431460|ref|ZP_03913509.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352826|gb|EEJ43003.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 623 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 65/241 (26%), Gaps = 33/241 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 + S + S + H++ +P+ ++ + ++ L D+ + + +++ + Sbjct: 371 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAIDDPEMAQNFLGVVQDETQ 428 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------- 103 I + + + + +F+ + + Sbjct: 429 RMIRMINDLLELSRLDQGTMEVKLEVINLNSLFNFVLNRFDMILESDAKNENTITKNYNI 488 Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++L N+ A P GG +T + +K I S+ G Sbjct: 489 LREFTKEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 548 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + +++ Sbjct: 549 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 608 Query: 213 L 213 L Sbjct: 609 L 609 >gi|260589382|ref|ZP_05855295.1| sensor protein KdpD [Blautia hansenii DSM 20583] gi|260540463|gb|EEX21032.1| sensor protein KdpD [Blautia hansenii DSM 20583] Length = 489 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + L L A L I HD+ SP+ +I + E L +E ++ R Sbjct: 251 QREAEMRLEKEQLRANLLRSISHDLRSPLTSISGNAENLLANEEKLPAGRRREIYRDIYD 310 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSWTG 106 + + + T + + L + V R++ Sbjct: 311 DSKWLINLVENLLSITRIENGNMKLDMQGEIVEEVIEEALKHVNFRGKDQSVRIECDEIL 370 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++++NL A P+ ++ I + + I S++ NG PE+ + Sbjct: 371 MAKMDLKLMLQVIINLVDNAVKYTPKNAEILIKAEAEGEKVILSVRDNGTGL-TPEQKEK 429 Query: 167 IVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + + + RL V L K Sbjct: 430 VFDMYYTVNRGIGDARRGMGLGLPLCQAIVKAHGSRLEVCDNTPKGTVFQFALSK 484 >gi|254516076|ref|ZP_05128136.1| nitrogen regulation protein NR (II) [gamma proteobacterium NOR5-3] gi|219675798|gb|EED32164.1| nitrogen regulation protein NR (II) [gamma proteobacterium NOR5-3] Length = 348 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 63/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMD-LVA------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + +S + L + + + H+I +P+G I + +LL+ + + + + Sbjct: 110 DRLLRISKEENLASAQETTRTVVRGLAHEIKNPLGGIRGAAQLLERELPQGSLQEYTGII 169 Query: 57 SMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 A + ++ L + Q+ + + + Sbjct: 170 IQEADRLRDLVDRLLGPNKQPALLPLNVHEVLEHVLQLAVVEAGERLAIVRDYDPSLPPI 229 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS---------------VQDSKNENIFSLKINGN 156 +RA+++ L + +L K + + NG Sbjct: 230 KGDRAQLIQALLNIVGNALQATDKQPQCALTLRSRSQRQFTIGEHRHRLVCQIDIIDNGP 289 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + H + L E + L Sbjct: 290 GI-PDQLSETLFVPMVSGRAEGTGLGLSISQSIIHRHGGLLNCESRPGE-TCFTIYLP 345 >gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 791 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 69/257 (26%), Gaps = 44/257 (17%) Query: 1 MAKNICFNLSSMDLV------------------ALLCSRICHDIISPIGAIHNSLELLDE 42 MA+ I + ++ + + + H++ +P+ AI E+L E Sbjct: 257 MAQTIRGQIERLEQAKDHAQRLQFVAEEANRAKSNFLANMSHELRTPLNAIIGYSEILQE 316 Query: 43 VGIE------DEVMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQ 88 + E + IRLS + + + L D+ Sbjct: 317 ECEDLGQTAMIEDLDRIRLSGRHLLTLINDILDLAKIESGKVEILPEEISLPQLLHDVRS 376 Query: 89 VIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLNLFMVAHASLPRGGKV-TISVQDS 143 ++ I ++ V + I +IL+NL A G + + Sbjct: 377 TVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLLSNAAKFTEHGRITLRVQPSEE 436 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRL 197 + FS+ NG + ++ + LA + Sbjct: 437 EGWIDFSVHDNGIGMSNAQLS-RLFQPFTQADASTTRKYGGTGLGLALSRRLAQLLGGDI 495 Query: 198 LPEIIDDHNVVLSALLE 214 + S L Sbjct: 496 RVQSELGVGSTFSVHLP 512 >gi|89072878|ref|ZP_01159435.1| sensor protein LuxQ [Photobacterium sp. SKA34] gi|89051400|gb|EAR56855.1| sensor protein LuxQ [Photobacterium sp. SKA34] Length = 576 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 24/217 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---------------- 63 + I H++ +P+ + S ELL + ++++ +L+ + S + Sbjct: 219 AMINHELRTPLNGLLGSAELLQDTPLDNDQQKLLTTLNHSGELLRAIINDLLDYSKINAG 278 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + + + E + + I +I +NL Sbjct: 279 MLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNIYYSHDLPKVFIGDEDRIKQIFVNLI 338 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A P G V + + F++K +G ++ + + + Sbjct: 339 SNAIKFTPA-GFVHAKLWWHNKQLQFTVKDSGCGI-DHSDQHKLFKPFSQVDITSKRSHE 396 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + E + L Sbjct: 397 GTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVSLP 433 >gi|116619022|ref|YP_819393.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097869|gb|ABJ63020.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 623 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 65/241 (26%), Gaps = 33/241 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 + S + S + H++ +P+ ++ + ++ L D+ + + +++ + Sbjct: 371 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAIDDPEMAQNFLGVVQDETQ 428 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------- 103 I + + + + +F+ + + Sbjct: 429 RMIRMINDLLELSRLDQGTMEVKLEVINLNSLFNFVLNRFDMILESDAKNENTITKNYNI 488 Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++L N+ A P GG +T + +K I S+ G Sbjct: 489 LREFTKEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 548 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + R+ + +++ Sbjct: 549 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 608 Query: 213 L 213 L Sbjct: 609 L 609 >gi|323486814|ref|ZP_08092132.1| sensor protein [Clostridium symbiosum WAL-14163] gi|323694954|ref|ZP_08109104.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323399827|gb|EGA92207.1| sensor protein [Clostridium symbiosum WAL-14163] gi|323501044|gb|EGB16956.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 467 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 51/216 (23%), Gaps = 20/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR---LKFMRLAFG 72 + + HD SP+ +I LE + + + + + +I + + + Sbjct: 248 ANVSHDFRSPLTSIKGYLEAILDGTIPPELYQKYLGIIISETERLNKLTQGMLTLNSLDS 307 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKIDLSRERAKILLNLFM 124 + + + + ++L NL Sbjct: 308 KGYLSRTNFDINRTVKDTAATFEGTCSAKRITFDLTFSDSIQMVYADLGKIQQVLYNLID 367 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID--SH 179 A + I + S+K G + + +V D Sbjct: 368 NAIKFSREDSVIYIQTSVRYEKVFVSVKDTGVGIPKNNIKKIWERFYKSDVSRGKDKKGT 427 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + L K Sbjct: 428 GLGLAIVKEIIQAHGENIDVVSTEGVGTEFIFSLPK 463 >gi|313158986|gb|EFR58363.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 349 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 66/220 (30%), Gaps = 25/220 (11%) Query: 21 RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + H++ +PI I + L ++ I + ++ S I + + Sbjct: 123 NVAHELKTPIFNIQGYISTLLDGGLEDELINRKYLERAEKSIDRLINIVNDLDTISKLES 182 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------------WTGEKIDLSRERAKILL 120 +++ L + IA ++ + ++++ Sbjct: 183 NMNRLKMERFDIVALTKEIAEQAEMEADKKGIKISVKGAENLPSPFWVLADKHYIGQVMV 242 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 NL + + GG+ + +D ++ + ++ NG+ + F + + Sbjct: 243 NLIINSIRYGKEGGQTRVHFRDMLDKILIEVEDNGSGIGKEDLPRVFERFYRTDKGRSRE 302 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + R+ S L+K Sbjct: 303 QGGTGLGLAIVKHIVEAHGERITVRSELGVGSTFSFTLKK 342 >gi|262384786|ref|ZP_06077918.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262293502|gb|EEY81438.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 571 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE L Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 S+ L+ +++ G + + ++IE I + ++V Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + L + KI L A P G++ I + + ++ G Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQGHSVEIYVQDFGKGIDP 514 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + + L + Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567 >gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226] gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226] Length = 984 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + E I + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 690 >gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 911 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 29/242 (11%) Query: 1 MAKN-ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEV-----------GI 45 +AK + + + + + + H++ +P+ AI+ E++ + G Sbjct: 602 LAKKYEEEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMFGPLGDDRYVGY 661 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDK 98 +++ R L ++ G ++ + + Sbjct: 662 MKDILSSGRHLLELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIVRGRAEEKQLKL 721 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 R VS E R ++++NL A P GG+VT+ S F + G Sbjct: 722 RADVSDLPEIEVDPRAFKQVMINLVSNAVKFTPEGGRVTVRGFLSGLGVAFQVSDTGIGI 781 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + ++ + + L + L + + +S + Sbjct: 782 AKDDLP-RLGRPFEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSIDSVLGEGTTVSVV 840 Query: 213 LE 214 L Sbjct: 841 LP 842 >gi|91200023|emb|CAJ73065.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 1128 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 78/236 (33%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 M K + L S + AL + S + H++ + + AI ++++L +++ Sbjct: 737 MEKEL---LHSKKMQALGTITSGVAHEVNNILAAIDGNIQMLMRQNKGRKMLLDSLKIVH 793 Query: 51 QLIRLSSMSAIIRLKFMRLA-----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + ++ + +F + + + + +A ++ Sbjct: 794 KYVKDGAEIVRRLNEFTKKNEDSPGYVPVDLAELTRHVVRFLSPRWQDMAQGTGIKYRIN 853 Query: 106 GEKIDLSRER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + R+ +++LN+ A ++P+GG + ++ + ++ S+ G Sbjct: 854 TDGLKKVRDIKGNPSELREVVLNIITNALDAMPKGGTLCFNIWEDEDNVNLSISDTGAGM 913 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++I D S + V + + + V Sbjct: 914 -TEEVISKIFDPFFTSKEKGTGLGLSVVYGIVKRHGGVIHVSSTVGMGSVFLLSFP 968 >gi|300710686|ref|YP_003736500.1| HTR-like protein [Halalkalicoccus jeotgali B3] gi|299124369|gb|ADJ14708.1| HTR-like protein [Halalkalicoccus jeotgali B3] Length = 1180 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 58/208 (27%), Gaps = 2/208 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + L S I HD+ +P+ LE+LD + E + ++ + Sbjct: 957 ERELERQNERLEGF-ASLISHDLRNPLTVASGYLEVLDVPEEQREFLGKVQSAHDRMERI 1015 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 ++ + ++ + E V + + V+ L +F Sbjct: 1016 IEDVLTLARQGKAIGETRSVSLAEVVEDAWENVETAEARLVVDGDPGCVAADGSRLEEVF 1075 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 + G ++ + + F ++ +G E + + +T + Sbjct: 1076 ENLFRNAIEHGSEGVTCRVGATPDGFYVEDDGPGV-PAEDREAVFEYGHTTTESGTGLGL 1134 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSA 211 V + + + D Sbjct: 1135 SIVSTIVEAHGWTVTVTDGTDGGARFEF 1162 >gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1] gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1] Length = 591 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 53/238 (22%), Gaps = 29/238 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54 M + L + + + H++ +PI + E L + + + Sbjct: 357 MTEQHRL----EKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKIIY 412 Query: 55 LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----Q 101 S Y + I Q + Sbjct: 413 DESKRMGRLVTDLLDLARMESGHMALYKDELPINSTFERITQKFSQVAKEKHVRLLFESE 472 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L NL A G Q+ S++ G+ Sbjct: 473 FNDEAMINIDEDRIEQVLTNLVDNALRHTDEGSVSVKVEQE-PTFAKISVQDTGHGIPQE 531 Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + + ++ + + + L Sbjct: 532 DLPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 589 >gi|71281534|ref|YP_268742.1| C4-dicarboxylate transport sensor protein [Colwellia psychrerythraea 34H] gi|71147274|gb|AAZ27747.1| C4-dicarboxylate transport sensor protein [Colwellia psychrerythraea 34H] Length = 611 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 59/232 (25%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 M K + S L + + I H+I P+ A+ + E + L Sbjct: 377 MNKMRDELIQSEKLALIGSMSASINHEINQPLTALRSYSENALAYQERSMTDKVKNNLSL 436 Query: 53 IRLSSMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106 I + + +VD + L +++ + S Sbjct: 437 IIGLVDRLSDIVSQFNSFSKKSTGVATAVDVQMSLMAAMSIVKHQAKAARVEFTSKPCLE 496 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE 162 + ++L+NL A +L I + S I ++ NG Sbjct: 497 TVHVYGDAIRFEQVLVNLLSNAIQALSEQEHKQIIISVSDVKEHVIIEIRDNGPGILVDN 556 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +L D + + L Sbjct: 557 IDRVFEAFFTTKENFGLGLGLSISHRIIESMQGQLNVSNHPDGGAIFTISLP 608 >gi|256842305|ref|ZP_05547809.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13] gi|256736189|gb|EEU49519.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13] Length = 571 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE L Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 S+ L+ +++ G + + ++IE I + ++V Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + L + KI L A P G++ I + + ++ G Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + + L + Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567 >gi|255016481|ref|ZP_05288607.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] gi|298377751|ref|ZP_06987702.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298265454|gb|EFI07116.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 571 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE L Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 S+ L+ +++ G + + ++IE I + ++V Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + L + KI L A P G++ I + + ++ G Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + + L + Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567 >gi|220919546|ref|YP_002494850.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957400|gb|ACL67784.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 589 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 + + L A+ L + + H++ +P+ A+ ++L E + E ++ Sbjct: 322 LRSMQAAAEHAERLAAIGRLVAGVVHELNNPLTAVTMYSDVLLERFTARAQDPSDVEKLR 381 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 I+ + + + TG+ + L + R Sbjct: 382 AIKDAGQRIQRLARDLITYARPTGARTEAVDLVPAVEEAGRMAKTALKESGAALVRDGGE 441 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++L L A ++P G +V +++ E + ++ G PE Sbjct: 442 GPYVVEGNRPSLVQVVLALVTNAAQAVPSGAEVRVALSREDGEVVLTVADAGAGM-PPEV 500 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + + ++ L Sbjct: 501 AARAFEPFFTTRAGVGIGLGLPIVQGIVERHGGSVSLSTAAGRGTTVTVRLP 552 >gi|218886860|ref|YP_002436181.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757814|gb|ACL08713.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 576 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 66/242 (27%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSS-------MDLVAL--LCSRICHDIISPIGAIH----NSLELLDEVGIED 47 M + +++ L ++ L + + H+I +P+ I+ + +L++ Sbjct: 324 MRASDERRIAAFVQMEHTQKLSSIGRLAAGVAHEINNPLAIINEKAGLASDLMELAKDFP 383 Query: 48 EV----------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAV 96 E ++ + L F R +D L + + ++ + Sbjct: 384 ERDRFRGLVDAILRSVERCRSITHRLLGFSRRMDVNIEQLDVNDVLKETMSFLEQEALHR 443 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLK 152 VS ++ +R ++ + + + + + S+K Sbjct: 444 SIATSVSLDPAMPRIASDRGQLQQVFLNILNNAFAAVPDGGSVTLATWLRDPDTVGVSIK 503 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG + + + + + + ++ Sbjct: 504 DNGKGMSDEVLRHIFEPFFTTKKTSGTGLGMFITYGIIRRLGGDIAVQSKEGAGTTVTVF 563 Query: 213 LE 214 L Sbjct: 564 LP 565 >gi|254476057|ref|ZP_05089443.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214030300|gb|EEB71135.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 883 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 62/237 (26%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + L+ A L + + H++ +P+ + +++LL + G+ E + + S Sbjct: 348 LRNARDKALAGERAKAELLTVMSHEMRTPLTGVLGAVDLLSDSGLSAEQSGYVTMIRQSG 407 Query: 61 IIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 + + D +G++ + + + Sbjct: 408 DRLMGHVNDVLQLSNLESSVDNENRRIFDLAKLVGELVKSQQTAARQAGNELSWSCNLGP 467 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163 T + ++L + A G + S + S+ G + Sbjct: 468 TNNVLGRPLAVQRVLQKILQNAVDFTRDGAVAVEVQRLGSSDRVEISIADTGKGIAEDDL 527 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E + + L Sbjct: 528 -DRIFEDFIRLDASYSRSSEGTGLGLAITRRTVEAMGGDISCESELGEGSLFTISLP 583 >gi|150006789|ref|YP_001301532.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149935213|gb|ABR41910.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 571 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE L Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 S+ L+ +++ G + + ++IE I + ++V Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + L + KI L A P G++ I + + ++ G Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + + L + Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567 >gi|21220619|ref|NP_626398.1| two component sensor kinase [Streptomyces coelicolor A3(2)] gi|4539211|emb|CAB39869.1| putative two component sensor kinase [Streptomyces coelicolor A3(2)] Length = 454 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 59/204 (28%), Gaps = 13/204 (6%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 H++ +PI + LEL+ D+ +E ++L+ ++ + R F Sbjct: 247 HELRTPITIVRGHLELMGDDPAEREETVRLVTDELDRMSRIVEDLLLLAKAERPDFVTPE 306 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 V D+ + + E + + ++ L A G + Sbjct: 307 PVQLAELTADVFVKARTLGEREWVLDGVADREVHLDPQRITQAMVQLAQNAVQHTTAGQR 366 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190 V I + + +G + + F + G + + V +A Sbjct: 367 VRIGSRADGWRIELYVADSGPGVQPQDAEVIFERFRRGTARRGVRGTGAGLGLSIVRAIA 426 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + R+ LE Sbjct: 427 EGHGGRVDLRTTAGGGATFVLTLE 450 >gi|315129764|gb|EFT85754.1| Histidine kinase [Staphylococcus aureus subsp. aureus CGS03] Length = 583 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 63/217 (29%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ S + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 V + L D ++ A D + +++ ++L NL Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178 A G ++ I+ ++++E+I +K G Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + + + L K Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKDTTFIIKLPK 581 >gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5] Length = 743 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 57/221 (25%), Gaps = 18/221 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63 S L + + H+I +P+ AI +LL + + + S++ + Sbjct: 522 ESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTEEDPEVRKEYNDIVSLNNGLLLQIISD 581 Query: 64 -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRER 115 A D + + + + V + + Sbjct: 582 VLDLSRIESGHADLVRTRFDLRTLCREAVETFRLQTPEEVVLDVEKGLPSCTVCQYRQGL 641 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173 +IL N A P+G + ++ G E +I + + Sbjct: 642 MQILANFIRNALKFTPKGFVTVGFERKRDR-LSLYVRDTGIGIPAEEL-DKIFERFYKVD 699 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + ++ + + Sbjct: 700 TFTQGTGLGLSICKSIAEQMGAQIGVDSAVGEGSCFRVEMP 740 >gi|295085256|emb|CBK66779.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 420 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 61/232 (26%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + ++S+ L + + + H++ +P+ AI L+ ++ ++ Sbjct: 179 LTIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASGEEERKMYADILAENN 238 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + L I + V++ Sbjct: 239 ERLLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKLNNSPVELICEAHVQP 298 Query: 111 LSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++L NL A G + E F + G E Sbjct: 299 IMMYSERERIIQVLSNLLHNAMKFTASGEIRFGCRLEGMEEVYFFVSDTGIGI-PEEDQK 357 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + L + + S +L + Sbjct: 358 KIFSRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLPR 409 >gi|261880781|ref|ZP_06007208.1| two component system sensor histidine kinase/response regulator [Prevotella bergensis DSM 17361] gi|270332558|gb|EFA43344.1| two component system sensor histidine kinase/response regulator [Prevotella bergensis DSM 17361] Length = 1324 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 25/240 (10%) Query: 1 MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51 M K N+ ++ L + I H+ +P+ + L+ + E V+ + Sbjct: 785 MEKKDKKNIEELNKAKLRFFTSISHEFRTPLTLLITKLDAIIEEITPGSVLYKQFKGLRR 844 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVS 103 L F ++ GYT + + + E Sbjct: 845 HANHLMELINELLDFRKMEQGYTQLEVAEHDMVAFAGAIGEGFSKYAESCNQKFVFTSSE 904 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE 162 + +R+ K+ NL A + + + V + + + NG E Sbjct: 905 PSVMCWFDARQMEKVFYNLLSNAFKYVEKDKGIVELQVTSDEQHVLIKVMDNGIGIHQDE 964 Query: 163 ---KFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + S+I I V + + + E + V L K Sbjct: 965 LENIFDRFYQAGGAKSGVSSITGTGIGLALVKEIVERHHGSIRVESSPGYGSVFIVTLPK 1024 >gi|256843982|ref|ZP_05549469.1| signal transduction histidine kinase [Lactobacillus crispatus 125-2-CHN] gi|256613887|gb|EEU19089.1| signal transduction histidine kinase [Lactobacillus crispatus 125-2-CHN] Length = 552 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ + + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEVLEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|144898537|emb|CAM75401.1| PAS/PAC sensor hybrid histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 613 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQ 51 + L AL L I H++ + +G I E+L D +++ Sbjct: 378 RQMERVLTEGQKLEALGRLAGGIAHELNNMLGPILMGAEMLLRSATLDDKNRSRCDRIIE 437 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEK 108 + L + R +VD + + ++ + R+ Sbjct: 438 AAKHGRDIVRGVLAYCRQERQDLNAVDLVAVVRQFSELAGSILPPAIRLDQHIGPDQAMV 497 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + +ILLNL ++ G + +S++ + + + G +I Sbjct: 498 MGNGGQITQILLNLANNGRDAMGGKGALAVSLEVVDGDAVLKVSDTGCGMSEK-VAARIF 556 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + V L R+ + + + L Sbjct: 557 DPFFTTKPVGQGTGLGLSVVHGLVTAMGGRVSVKSVSGQGTTFTITLP 604 >gi|189423473|ref|YP_001950650.1| GAF sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189419732|gb|ACD94130.1| GAF sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 469 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 + + L A+ + + I H++ +P+ I +L E + + I Sbjct: 230 LQDTRQRLVHGAHLAAIGEMAASISHELKTPLITIGGFAARLGRMLPENTPQRHYLDTII 289 Query: 55 LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S K L D ++ + + S + Sbjct: 290 SESHRLERLLGDILAFSRKPTICFQECNLRGVVKECLDDYVVLLGERKITLETSVPSGSW 349 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPE 162 + S + ++ +NL + A ++P+GG++ + ++ + S+ +G E Sbjct: 350 TVLGDSNQLKQVCINLLVNAQEAMPQGGRLQVGLRAGGDGGRPCAVVSITDSGGGI-PEE 408 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I + + V + + L DD +L Sbjct: 409 LQSKIFTPFFTTKRHGTGLGLAIVNRIVQNHGGSLKVFNTDD-GAEFQVILP 459 >gi|115379878|ref|ZP_01466940.1| sensory transduction histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310822776|ref|YP_003955134.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115363115|gb|EAU62288.1| sensory transduction histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309395848|gb|ADO73307.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 499 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 31/240 (12%) Query: 4 NICFNLSSMDLVALLC-----SRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 + L A+ S H++ +P+ ++ LEL+ + + + Sbjct: 245 QVRNRAEQEALAAVRARDEFLSMASHELKTPLTSLKLQLELVKGAMAGADSALFQRLAPK 304 Query: 53 IRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +R MR+ F + + + + + Sbjct: 305 MRTMERQIQRLQALNGSLLDVATLDGGRMRMDFQWVNLASLIEEAVERLDPDFERAGCEV 364 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + V + ++++NL A + I +Q S N ++K G Sbjct: 365 LLHVEGETQGQWDPMRLDQVVVNLLSNAAKYGAGKP-IHILLQRSGNRVSLAVKDQGIGI 423 Query: 159 RFPEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + Y +L L + + + L Sbjct: 424 -SSEAQARLFRKFERAVPARHYGGLGLGLYISRMLVEAMGGTLQVDSLPGQGATFTVSLP 482 >gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 603 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 30/238 (12%) Query: 6 CFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 L A + + H+I +P+ +I ELL + + + Q + + + Sbjct: 363 QQELERAKEAAEAGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTELSPDQRQFVTILT 422 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQ 101 ++ L + + L+ + + + + + + Sbjct: 423 RASSSLLNLINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEID 482 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + ++L+NL G V + ++ + ++ +K G Sbjct: 483 PQVPEKILGDATRFQQVLINLIGNGLKFTTHGE-VRVQLKVNGHQLWVGVKDTGIGMAPE 541 Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + FT+ G+ + + L + + V L Sbjct: 542 QMQGLFTRFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEIGQGSVFYFTLP 599 >gi|329769298|ref|ZP_08260714.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325] gi|328839101|gb|EGF88686.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325] Length = 615 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 20/219 (9%), Positives = 61/219 (27%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S + H++ +P+ +++ +E L+ + + + + I + I + + Sbjct: 388 FVSTVSHELRTPLTTMNSYIEALEEGVINDKELAPQFIDTIHKETTRMIRMVNELMQLGK 447 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNL 122 +D + I E ++ + ++ N+ Sbjct: 448 MDIKEEHYDKEFIDINKLIEQISDRFELTHPEKNFIKYIPKTPIFVEGDQDKLTQVFDNI 507 Query: 123 FMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175 A P + + + N S+K G + T Sbjct: 508 INNAIKYSPNGKNITIRVRQNYNHNRVSISIKDEGVGIPLVHIDKIFNRFYRVDKSRQRT 567 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+ + + + ++ L Sbjct: 568 MGGTGLGLALAKNIVEAHRGRIWAQSREGYGSIIFVTLP 606 >gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] Length = 966 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S L + + H+I +P+ + + LL + G++ + + + + S Sbjct: 459 ARQEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLKDTGLDRQQGHYVDVINRSGT 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSWT 105 L + Y+ + + ++ + + ++ ++ Sbjct: 517 GLLAILNDVLDYSKIEAGHLEIRPVDFNLYAMVDDTKQLLNGRAQEKSLQLEYFIESDVD 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEK 163 ++L NL A +G D +F + G E+ Sbjct: 577 KFWFGDMTRIGQVLNNLVGNAIKFTDKGNVDIYVAHDPDQQGHVLFEVSDTGVGISEQEQ 636 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + L + E + Sbjct: 637 QTLFDAFTQASGGLSSKGGTGLGLAISKRLVEAMGGEIHLESEIGEGSRFWFSVP 691 >gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3] gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3] Length = 736 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 22/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 A+ M L + + + H+I +P+ AI +LL+ E + E + LI + Sbjct: 497 ARRKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 554 Query: 57 SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + + M ++ + + Q++ K Sbjct: 555 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 614 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ N A + ++ + + S+K G +K Sbjct: 615 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 673 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + H + E + L Sbjct: 674 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSKFTISLP 725 >gi|288555846|ref|YP_003427781.1| signal transduction histidine kinase [Bacillus pseudofirmus OF4] gi|288547006|gb|ADC50889.1| Signal transduction histidine kinase [Bacillus pseudofirmus OF4] Length = 473 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAI 61 + L DL S + H++ +P+ + E LL++ + ++ + + + + Sbjct: 231 EMANALEKEDLRKQTFLSNVSHELRTPLSYVKGYSEVLLEDEQLREDQKEFVSIIHNESD 290 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------SWTGE 107 K + L V+ I + + Sbjct: 291 RLSKLVNDLLDLAKIQGEQEVLSVEPTVLSALIDEAAASYLPSARKKGIEIITSSDESII 350 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFP---EK 163 + ++L NL + G +T ++ + + G Sbjct: 351 ALIDPNRIKQVLHNLIQNSLHHCQSGDSITRTLTLERANICKIMITDTGAGMSKEALVHL 410 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + E ++ L Sbjct: 411 GERFYRTDDARTRKYGGTGLGVAISKAIIEKHNGTIHYESELGKGTTVTICLP 463 >gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 771 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 22/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 A+ M L + + + H+I +P+ AI +LL+ E + E + LI + Sbjct: 532 ARRKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 589 Query: 57 SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + + M ++ + + Q++ K Sbjct: 590 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 649 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ N A + ++ + + S+K G +K Sbjct: 650 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 708 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + H + E + L Sbjct: 709 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSKFTISLP 760 >gi|317049978|ref|YP_004117626.1| osmosensitive K channel signal transduction histidine kinase [Pantoea sp. At-9b] gi|316951595|gb|ADU71070.1| osmosensitive K channel signal transduction histidine kinase [Pantoea sp. At-9b] Length = 891 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 18/227 (7%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56 L L S + HD+ +P+ + E+L +++ + + Sbjct: 652 RLAAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASEQSKYVAQANQIREQTLST 711 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSR 113 L R+ G + + L ++ + E + + Sbjct: 712 IRLVSNMLDMARIQSGGLNLREEWVALDEVIGGALSSMGPSLKGHDFTLDLPAELVLIKG 771 Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQI 167 + ++ N+ + + I ++ +G F + Sbjct: 772 DSSMLERVFTNIIENSLKYAGNAAQHGIHAWRENARLEIAIWDSGPGIAPDALTRIFDKF 831 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ ES + + + + R+ E + L Sbjct: 832 TRGDKESAVPGVGLGLAICKTIVESHGGRIWAENRAEGGASFRLSLP 878 >gi|224500462|ref|ZP_03668811.1| hypothetical protein LmonF1_12654 [Listeria monocytogenes Finland 1988] Length = 459 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 64/232 (27%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+ G + I + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISKVDMTKIFD 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458 >gi|313148670|ref|ZP_07810863.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137437|gb|EFR54797.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 463 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 76/232 (32%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L+ + +E + IR+ + + Sbjct: 219 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 278 Query: 61 IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L+ + ++ ++ + L + + VQ+ +T ++ Sbjct: 279 ELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQMQQKNQRPGVQILFTEKEPC 338 Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++++NL A G KNE F +K G +K Sbjct: 339 CVINTDRLRLSQVIINLMNNAMKFTAEGSITLGYRLNGQKNELYFFVKDTGIGI-PADKA 397 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V S + + ++ + + + L Sbjct: 398 EKVFERFVKLNSFVKGTGLGLAICRVIIERLGGTIGVDTAVEEGACFWFRLP 449 >gi|302384794|ref|YP_003820616.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] gi|302195422|gb|ADL02993.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] Length = 468 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 60/216 (27%), Gaps = 20/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------R 68 + + HD SP+ +I LE + + + ++ + + + + + Sbjct: 249 ANVSHDFRSPLTSIKGYLEAILDGTIPPEMHEKYLNRVISETDRLNKLTQGLLTLNSLDS 308 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124 + S D + D E + ++++ + + ++L NL Sbjct: 309 KGYLNRTSFDINRVIKDTAASFEGTCNGKNITFDLTFSESIQMVYADLGKIQQVLYNLID 368 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--SH 179 A + I + S+K G + + + + D Sbjct: 369 NAIKFSHADSTIYIQASGKYEKIFISIKDTGIGIPKESLKKIWERFYKTDSSRGKDKKGT 428 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + L K Sbjct: 429 GLGLAIVREIIQSHGENIDVVSTEGVGSEFIFSLPK 464 >gi|298482223|ref|ZP_07000410.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271510|gb|EFI13084.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 420 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 63/232 (27%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + ++S+ L + + + H++ +P+ AI L+ ++ ++ Sbjct: 179 LTIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASGEEERKMYADILAENN 238 Query: 58 MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + D L +++ + + + + + Sbjct: 239 ERLLRLVNDIFDLSQIESGTIDFVYTEFDVNDLLRELDGIFKAKLNNSSVKLICEAHVQP 298 Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++L NL A G + E F + G E+ Sbjct: 299 IIMYSERERIIQVLSNLLHNAMKFTASGEIRFGCRLEGMEEVYFFVSDTGIGI-PEEEQK 357 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + + + L + + S +L + Sbjct: 358 KIFSRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLPR 409 >gi|293380946|ref|ZP_06626979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Lactobacillus crispatus 214-1] gi|290922477|gb|EFD99446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Lactobacillus crispatus 214-1] Length = 552 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ + + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1364 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + +++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQEMVTKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARALLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKLKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVITLEK 872 >gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 765 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ S+ + + +R+ H+I +P+ A+ + ELL E + + + + + + Sbjct: 365 LSRAREMAESADEAKSQFLARMSHEIRTPMNAMLGAGELLAETSLNGDQRRYVSIYQSAG 424 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDLS 112 + +R + L + + I V + + Sbjct: 425 EHLRELVRDVLDLSRFESGRFRLEETPFSLRSAIDKACAVFTLEARNKGLDLRCCVDPDT 484 Query: 113 RER--------AKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGN 156 +R ++L+NL + P+G F+++ G Sbjct: 485 PDRLVGDPTALRQVLVNLLGNSIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTVQDTGI 544 Query: 157 LARFPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VL 209 + F + G+ + L + + Sbjct: 545 GIPVDKQEVIFERFSQADGSTSRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEGTTLTF 604 Query: 210 SALLE 214 + L Sbjct: 605 TVRLP 609 >gi|262046125|ref|ZP_06019088.1| signal transduction histidine kinase [Lactobacillus crispatus MV-3A-US] gi|260573455|gb|EEX30012.1| signal transduction histidine kinase [Lactobacillus crispatus MV-3A-US] Length = 544 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ + + ++ S+ + +RL+ Sbjct: 319 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 378 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 379 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 438 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 439 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 497 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 498 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 533 >gi|256849456|ref|ZP_05554888.1| signal transduction histidine kinase [Lactobacillus crispatus MV-1A-US] gi|256713572|gb|EEU28561.1| signal transduction histidine kinase [Lactobacillus crispatus MV-1A-US] Length = 552 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ + + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|229098082|ref|ZP_04229030.1| hypothetical protein bcere0020_33160 [Bacillus cereus Rock3-29] gi|229117100|ref|ZP_04246479.1| hypothetical protein bcere0017_33800 [Bacillus cereus Rock1-3] gi|228666268|gb|EEL21731.1| hypothetical protein bcere0017_33800 [Bacillus cereus Rock1-3] gi|228685273|gb|EEL39203.1| hypothetical protein bcere0020_33160 [Bacillus cereus Rock3-29] Length = 516 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 64/227 (28%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + S L L + I H+I +P+ ++ L LL + D ++ Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + ++ ++ I + + K D+ Sbjct: 341 ISQMESITSQFMAMSKPQVLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDI 400 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167 + ++ + ++ N + + G ++ +++ Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGI-PEDRISRL 459 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ +L + ++ L Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506 >gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11] gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11] Length = 692 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 25/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIED-------EV 49 AK + + + + H+I +P+ +I ++ LL E ++ Sbjct: 317 AKTEAEKANKAK--SQFLAMMSHEIRTPLNSILGLVDIFHGSLLSEEQLDWLNQMESSSQ 374 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + L +S + I R++ I + + V+ + Sbjct: 375 LLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQNVP 434 Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++ NL A G + N S+ G Sbjct: 435 KYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTTL-E 493 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + + L + + E + L Sbjct: 494 QLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNVGSTFKITLP 548 >gi|184159891|ref|YP_001848230.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|183211485|gb|ACC58883.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|193078705|gb|ABO13765.2| two-component sensor [Acinetobacter baumannii ATCC 17978] gi|322509806|gb|ADX05260.1| phoR [Acinetobacter baumannii 1656-2] Length = 452 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78 I H++ +P+ + +E + + + S R+ + +++ Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ +A+ K Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445 >gi|222053516|ref|YP_002535878.1| histidine kinase [Geobacter sp. FRC-32] gi|221562805|gb|ACM18777.1| histidine kinase [Geobacter sp. FRC-32] Length = 470 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL 55 +AK L ++ + H++ +P+ + E+ L G DE+ +++R Sbjct: 229 LAKTFNITLDRLENAFNRTRQFSMDVSHELRTPLTILRGETEVGLRWGGDADELKKILRS 288 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + L L A +KR+ + Sbjct: 289 NMEEINRMSDIIGDLLELSRAEEGKLVLDPVPVELHELLQDICTKAAPDAREKRIILDLP 348 Query: 106 G----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +I LNL A P GKV+++V S+ G Sbjct: 349 NAASLHVAGDPARLQQIFLNLIDNAIKYTPCDGKVSLAVDSEPGWAKVSVTDTGPGIPEA 408 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + R+ + + L Sbjct: 409 DLPHIFEQFYRVDKARNRNDGGSGLGLSMVRAFSEAHGGRVEIFSLPGSGCTFTVFLP 466 >gi|116620970|ref|YP_823126.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224132|gb|ABJ82841.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 635 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 65/214 (30%), Gaps = 21/214 (9%) Query: 22 ICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + H++ +P+ AI S EL L E + + + S A + F+ + G Sbjct: 408 VTHEMRTPLSAIQGSSELISRYSLTEEKRQQIALLINSESKRLARMVEIFLNVERLSAGQ 467 Query: 77 VDS--------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125 ++ + +++V + + E + ++ +R + + Sbjct: 468 MELKREAISVKEMMEVCVQRVTPLAERKHIAITLEPVPENLSVTGDRELMEYACYNLLTN 527 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHD 180 A P+ +VT S + ++K G E + Sbjct: 528 AVKYSPQRTEVTASAWRDDSLVRIAVKDQGIGMDQKEVKQIFQKFYRTKKAEESGEAGTG 587 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + ++ ++ + ++ Sbjct: 588 IGLSIVQQIIEQHGGKIEVTSRPGAGSCFTVVVP 621 >gi|261406530|ref|YP_003242771.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261282993|gb|ACX64964.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 490 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++I L + L S I HD+ +PI I +E + + D+ + +I Sbjct: 245 LHESIQLRLRDEENRKELISNISHDLRTPITNIKGYVEGIRDGVADTPEKMDKYVNIIYT 304 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + + L + D ++R + +++ Sbjct: 305 KTIDLDKLVDELFLYSKLDLKQVPFMFEHVDIIGFIDDCIEEQRYVLEEKDIRLEWKERP 364 Query: 116 -------------AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160 + +LN+ A + + + IS++ S ++ NG Sbjct: 365 GDPVEVIADLEKLKRTVLNIIGNAQNFMDKGQKNIGISIRLSPEWVTVEIRDNGTGIAPE 424 Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ E L L++ Sbjct: 425 AIPYIFERFYRAESSRNSSTGGSGLGLAIASQIIEGHGGQIWAESELGVGTSLYFTLKR 483 >gi|229021940|ref|ZP_04178501.1| hypothetical protein bcere0029_3070 [Bacillus cereus AH1272] gi|228739355|gb|EEL89790.1| hypothetical protein bcere0029_3070 [Bacillus cereus AH1272] Length = 369 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRL 55 M + + + + + I H+I +P+ A+ ++ L++ + ++Q I Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNLEDTMSYEIMLQEIER 204 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDL 111 + + + + L + Q++E + V +QV Sbjct: 205 INEFVSELMLLGKPKPTNYEWCNIREILLYVVQLMESYATQYKVKFHLQVDGNLPVINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P+GG + I S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPKGGDIQIRAYKKAGENLCISIEDQGFGI-ENEKIEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 324 FYTTKENGTGLGLMITYKIIEEHQGSIAIQSSVGVGTKVEIYLP 367 >gi|171912871|ref|ZP_02928341.1| Multi-sensor Signal Transduction Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 645 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 74/242 (30%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLD--------EVGI 45 + + + ++ L + + + H++ P+ AI + + + Sbjct: 392 EQELRMHRQHEEMARLGRVAVLGEMTASLAHELNQPLTAIVTNASAARRFMNRDNPDPEM 451 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGY----TGSVDSLIGLGDIEQVIE-DFIAVDKRV 100 ++++Q I + A ++ +R ++D + ++ +++ D +A V Sbjct: 452 MNDLLQDITTAGQRAGEIIRGIRSMVKPGGAGREALDVNSLISEVLSLMKTDIMAKSSSV 511 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--------DSKNENIFSLK 152 + + + ++ L + +L + + + S S++ Sbjct: 512 DLDLAPQLPQVHAIAVQVQQVLMNLLMNALEAMQHLPATSRRLTVSSSSPSGEAVHISVR 571 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ D + D + + + L + + + Sbjct: 572 DLGTGLPTDVPTRRLFDQFFSTKPDGMGMGLAIARSIVEGHGGTLEASDHPEGGAKFTII 631 Query: 213 LE 214 L Sbjct: 632 LP 633 >gi|65318667|ref|ZP_00391626.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] Length = 463 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 241 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 300 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 301 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 360 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + S+K G + + Sbjct: 361 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 420 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 421 GLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKLK 455 >gi|289434077|ref|YP_003463949.1| sensor histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170321|emb|CBH26861.1| sensor histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 459 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 20/228 (8%) Query: 8 NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAII 62 L + + + H++ SP+ ++ LL E + ++ + Sbjct: 231 ELEKSEAARQEFVANVSHELQSPLTSMQGFATLLASDTLTEKERAEYLAVLSEETTRLSS 290 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWTGEKIDLSRER 115 K + + +V + K + ++ +K++ + + Sbjct: 291 LTKQLLTLASLDQEAELRKKDQVQLEVQWRQLLQTTEWSWRAKEITINLELDKVNCTGDA 350 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171 ++ NL A P G + I + + ++ +G + Sbjct: 351 ELLYQVWSNLLTNAIKFTPTSGTINIRLYQDASHAFVEVEDSGIGISEADIDKIFQRFYK 410 Query: 172 ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + + H + + E + + L K Sbjct: 411 ANHSRTREEGSSGLGLSICKKIIHLHHGEIFVESKSEKGTKFTIKLPK 458 >gi|302381375|ref|YP_003817198.1| integral membrane sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192003|gb|ADK99574.1| integral membrane sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 546 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 68/245 (27%), Gaps = 35/245 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + + +++ + + H+I +P+ +I ++LE L + D + +++ Sbjct: 300 MTETLSARMDAIE---RFAADVAHEIKNPLTSIRSALETLDLVRDKDKRDRLTLVLQQDV 356 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104 + + + VD L DI V E + + + Sbjct: 357 KRLDRLITDISNASRLDAELSRDQPRPVDLKPLLSDIVGVYETTAKPGEAPVLLDLALDG 416 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160 + ++ NL A + P G V D + +G Sbjct: 417 PARVMGRDGPLGQVFRNLIDNARSFSPPGRAVRVSVSRDDADPDRSLSIRVDDDGPGI-P 475 Query: 161 PEKFTQIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDD-----HNVVL 209 PE + S + V + + R++ + Sbjct: 476 PENLETVFQRFYTSRPRGTAFGSNSGLGLSIVRQIVEAHGGRVVASNRTGPDGSIEGAMF 535 Query: 210 SALLE 214 L Sbjct: 536 EVTLP 540 >gi|260557861|ref|ZP_05830074.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii ATCC 19606] gi|260408652|gb|EEX01957.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii ATCC 19606] Length = 452 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78 I H++ +P+ + +E D+ I + + + + Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ +A+ K Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445 >gi|270294109|ref|ZP_06200311.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275576|gb|EFA21436.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 758 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 63/239 (26%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDE 48 + + + S +L + L + H+I +P+ AI ++L E Sbjct: 518 LKDHEQELIESRELAEQAELKQSFLN-NMSHEIRTPLNAIVGFSDMLANEPEFSDEERQE 576 Query: 49 VMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + +I ++ + + + F L + ++ Sbjct: 577 FVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQPPLQF 636 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156 + + ++L N A+ G S E ++ G Sbjct: 637 LKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKEGSIQLGYCCPSGMSEVHLYVEDTGI 696 Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ S + +L+ + R+ + + + +L Sbjct: 697 GIPHSEQKMIFERFYKRSEFSQGVGLGLSICVLIVEKMGGRIELQSEEGRGSRFTVVLP 755 >gi|269795552|ref|YP_003315007.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269097737|gb|ACZ22173.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 576 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54 M K F L I H++ +P+ +I LELL + + + + + Sbjct: 339 MTKAREF----ERLKDEFVGMISHELRTPLSSILGYLELLRDEEDGPLTAEQTQYLDVAE 394 Query: 55 LSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQ 101 ++ + + + S + L Q E A + Sbjct: 395 RNAQRLLRLVGDLLFTAQVEAGRFPIVHQSTELESVLRAAAQTFEPVAAAASVRLRVVMD 454 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 S + + + + NL A P GG+VT+S+ +++ G Sbjct: 455 ESLSTVVRGDATRLGQAVDNLLSNAVKFSPAGGQVTLSLVAHDERATITVRDTGIGIPDT 514 Query: 162 EKFT---QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + ++ + + + ++ RL + L Sbjct: 515 ELDQLTTRFFRASTATSASVPGIGLGLAITKAIVVAHRGRLDVTSEVGIGTAFTVDLP 572 >gi|256830593|ref|YP_003159321.1| nitrogen-specific signal transduction histidine kinase NtrB [Desulfomicrobium baculatum DSM 4028] gi|256579769|gb|ACU90905.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfomicrobium baculatum DSM 4028] Length = 631 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/260 (9%), Positives = 67/260 (25%), Gaps = 51/260 (19%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAI---------HNSLEL-----LDEVGIEDE 48 + S ++++ L + + H+I +P+ I SLEL L E D Sbjct: 361 EEMLIQSEKMISVGGLAAGMAHEINNPLAGILQNGQVIRNRMSLELPANRKLAEELGTDM 420 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG------------------------ 84 + + + + + + + Sbjct: 421 ALIHGYFERRGCLRMMDSIMDSGLRAARIVENMLSFSRKNTLRMAEVDICGLLDRTLELA 480 Query: 85 -DIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140 + + + + R+ + + ++ NL ++ + + Sbjct: 481 ANDYDLKKQYDFRKIRIVREYEENLPLICCEESKIQQVFFNLIRNGAQAMGSQDRPPCFI 540 Query: 141 ---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVI-LLAHENK 194 + E ++ NG E ++ + + + + L+ + Sbjct: 541 LRVMKAGKEVRIEIEDNGPGM-SEELRKRVFEPFFTTKRVGEGTGLGLSVSYFLIVENHG 599 Query: 195 IRLLPEIIDDHNVVLSALLE 214 R+ + V L Sbjct: 600 GRIDVDSSPGKGSVFIIHLP 619 >gi|182413546|ref|YP_001818612.1| integral membrane sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177840760|gb|ACB75012.1| integral membrane sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 499 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 24/226 (10%) Query: 13 DLVALLCS------RICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIRLSSM 58 ALL + + HD+ +P+ + + EL + + ++ Sbjct: 268 KNAALLRAMREALDNVAHDLRTPLTRLRGTAELALQNAENRGPQAEALADCVEQADDVLR 327 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDL 111 ++ G + L + + + +V V+ + + Sbjct: 328 LLRALMEISEAEAGMLRLEKTETDLAALARDAVELYADVADAKSVALSVEAAAAVPVLAD 387 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + + + NL A P GG V + V + + S+ G E + ++ Sbjct: 388 ATRLRQAIANLIDNAVKYTPAGGGVVVRVGPEADAAVLSVSDTGPGVPAAEQARVWERLY 447 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + + V + + R+ + V L Sbjct: 448 RGDASRSERGLGLGLSVVRAIVEAHGGRVALRNAPEAGAVFEVRLP 493 >gi|206977539|ref|ZP_03238433.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217958875|ref|YP_002337423.1| sensor histidine kinase [Bacillus cereus AH187] gi|222095034|ref|YP_002529094.1| sensor histidine kinase [Bacillus cereus Q1] gi|229138086|ref|ZP_04266684.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26] gi|206744257|gb|EDZ55670.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|217063391|gb|ACJ77641.1| sensor histidine kinase [Bacillus cereus AH187] gi|221239092|gb|ACM11802.1| sensor histidine kinase [Bacillus cereus Q1] gi|228645431|gb|EEL01665.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26] gi|324325417|gb|ADY20677.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 466 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + ++++ + ++K G + + Sbjct: 364 NAIRYTNQNGDIMVTLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458 >gi|322435323|ref|YP_004217535.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321163050|gb|ADW68755.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 458 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 57/226 (25%), Gaps = 28/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I +E L + E + I ++ + + + Sbjct: 227 FVANVSHELRTPLTSITGYVETLLDHEAGISPQGREFLGTILKNATRMNRLTEDLLVMAR 286 Query: 73 Y--------TGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKILLN 121 V + + + + ++ + ++ + + ++L N Sbjct: 287 VEAATVELSPAPVPADLLVREAVAGMKGLVQENEGVLEIGTITDCQVFADHDAVMQVLSN 346 Query: 122 LFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFPE---KFTQIVDGN 171 L A V + FS++ G F + + Sbjct: 347 LIENAIKYGQPKAGGGTRVVISAREVAAPYDAVEFSVRDFGQGIASEHLNRIFERFYRVD 406 Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + E L K Sbjct: 407 KTRSRESGGTGLGLSIVRHMVQAQGGTIRAESELGEGSCFLFTLPK 452 >gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426] gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426] Length = 984 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 690 >gi|219670671|ref|YP_002461106.1| PAS/PAC sensor signal transduction histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219540931|gb|ACL22670.1| PAS/PAC sensor signal transduction histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 713 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 22/231 (9%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------- 49 + + + A LL S + H+I +P+ + E L + E+E Sbjct: 475 EARMIETDKMAAIGLLASGVAHEINNPLAIVAAHSEDLLDRLNEEEPGPSQAELKTGFKT 534 Query: 50 -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105 + I L F R + +D I ++E + Q Sbjct: 535 VLGQIARCKQITDRLLGFARKRDSGSDLIDIGIASAQTLGLLEHKAKQKHLRVHFQAEDN 594 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + E +++LNL A + G + + N+ F ++ +G Sbjct: 595 LFALGNENEWQQVVLNLITNALDASAPGKVIEVRGYREDNKIQFVIQDHGEGIPQNHLKQ 654 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + Y + + + ++ E + ++ L Sbjct: 655 -VFNPFFTTKSPGQGTGLGLYVSYGIIVKMQGDMILESTEGQGTKVTISLP 704 >gi|196234229|ref|ZP_03133060.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196221688|gb|EDY16227.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1174 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 L S + A+ L I HD + + AI +LL E + M Sbjct: 789 EEELLQSQKMDAVGRLAGGIAHDFNNILTAILGYSDLLIGQIDERQWMYKHLSEIRKAAD 848 Query: 59 ----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + + + +++++++ I ++ E L + Sbjct: 849 FAASLTHQLLAFSRRQPLFLRVFNINDTVKNMQKMLQRVIGEHIQIHTHLKAEIGRLKAD 908 Query: 115 R---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156 ++LLNL + A ++P +++ + ++ G Sbjct: 909 PSQLEQVLLNLCVNARDAMPNGGSISIETADVTYFLDDFYSVNEMPAGEYVKLTICDTGT 968 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + ++ + + S L Sbjct: 969 GM-TADVKKHIFEPFFTTKEKGQGTGLGLATCYGIVKQSLGYITVDSQVGVGTTFSIYLP 1027 Query: 215 K 215 + Sbjct: 1028 R 1028 >gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 974 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 66/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K +L A SR + H++ +P+ AI L+ + ++ Sbjct: 457 RKQAEESLRQAKEAAEEASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKDVLPVKQF 516 Query: 54 RL-------SSMSAIIRLKFMRLAFGYTGSVDSLI-----------GLGDIEQVIEDFIA 95 S + + LA G ++ L +E ++++ Sbjct: 517 ENLEKILASSEHLLSLINSILDLAKVEAGRMEVKPSDFALEPVLDLCLRTVEPLVKNEGV 576 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 R + +IL+NL A G VT+ V+ F++ G Sbjct: 577 RLVRDVRDPPPMLRTDEEKLRQILINLLSNAIKFTEAGS-VTLRVRSVDEGIEFAVMDTG 635 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + + LA R+ E + + Sbjct: 636 IGIPAGALSAIFEEFHQVDNSATRSHSGTGLGLAISHRLARLLGGRIDVESREGEGSTFT 695 Query: 211 ALLE 214 + Sbjct: 696 LTIP 699 >gi|305666831|ref|YP_003863118.1| two-component system sensory/regulatory protein [Maribacter sp. HTCC2170] gi|88709055|gb|EAR01289.1| two-component system sensory/regulatory protein (hybrid family) [Maribacter sp. HTCC2170] Length = 594 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 58/222 (26%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L + + H+I +P+ I +LL E + ++ + ++ L + Y+ Sbjct: 86 LIANVSHEIRTPLNGIIGFTDLLKEDNLNQNQLEKVEAIQTASHSLLGIINELLEYSKLS 145 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSRERAKILLN 121 + L + + + I + + + ++ILLN Sbjct: 146 EGLESINQDDFNFDSVIDNVMYLCDTLITSEDVVLKSKIDPGIPKILKGDPAKLSQILLN 205 Query: 122 LFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NV 172 L A + +G + + ++ F + G Sbjct: 206 LIGNAVKFVEKGEIILDVSLKNQRNKDIYLEFIISDTGIGISQENLKHIFGYFKQADSYT 265 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E V L Sbjct: 266 SVNYGGSGLGLSIVKQIIDLLGGTIEVESELGTGTVFKFTLP 307 >gi|332703304|ref|ZP_08423392.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553453|gb|EGJ50497.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 477 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 18/233 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52 + K + + L ++ L S I H + +P+ I S ++L E + ++ Sbjct: 234 LLKRQGQLVQAQKLSSIGTLSSGIAHQLNNPLNNISTSSQILKEELGGEAPEFQRRMLAN 293 Query: 53 IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107 I + A L+F R S + +I+ ++ + Sbjct: 294 IEQETFRARDIVRGLLEFSRHKDFNPASNRVKDIVERSMLLIKSQAPAGVTLETDIPEDL 353 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ +NL + A ++ + +VT +NE ++ G K Sbjct: 354 VAFCDKNGMQEVFINLLLNAVQAIDQPPGKVRVTAKDVPGRNEVRIAVSDTGRGMSEAVK 413 Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + V L +N+ + E L K Sbjct: 414 SQVFDPFFSTKEVEVGTGLGLFIVYGLVLKNRGSISVESSVGQGATFFITLPK 466 >gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 587 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 59/225 (26%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66 L S + H++ +PI +I +E L + + + + +I + + + Sbjct: 363 EQLRTEFVSNVTHELKTPITSIRGFIETLKSGAINKPDVSERFLDIIDIEAERLHELIND 422 Query: 67 ---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGEKIDLSRER 115 + D + + + V Sbjct: 423 ILSLSEIENKLSDTDLESFSLKSIIDGVFEVMENIAIEKNVLLNNTVDEKILIKANRNRM 482 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +++LNL A G VT+ Q + + S+K G P+ +I + Sbjct: 483 KQLVLNLVDNAIKYNIPTGSVTVDAQRVGGKVVISVKDTGIGI-PPDHIPRIFERFYRVD 541 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + L Sbjct: 542 KGRSRDMGGTGLGLSIVKHIVNLYNGDIKVSSEVGKGTEFIIQLP 586 >gi|260219784|emb|CBA26662.1| hypothetical protein Csp_H39720 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 280 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 62/220 (28%), Gaps = 10/220 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K+ L+S +LL H++ SP+ I LEL+ ++ R S Sbjct: 61 LVKSRDTLLASQK--SLLA-NASHELRSPLARIRMGLELMGSSPSPAFKQEISRNISELD 117 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + + D + + Q+ ++ + + Sbjct: 118 QLIEEILLASRLDAKEADLGTIEAVELIGLAAEECARNQAQLDVEAAELAVPGVAKLLRR 177 Query: 121 NLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174 + + + G + + + ++ +G PE+ +I + Sbjct: 178 AVRNLLENARRYGAGEVHLNLRQDGDWAVLQVRDSGPGV-PPEQQERIFEPFYRLPGASE 236 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 237 REGGVGLGLALVKSIAERHGGSVKCSNRPEGGACFEIRLP 276 >gi|239904905|ref|YP_002951643.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794768|dbj|BAH73757.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 823 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 23/251 (9%), Positives = 65/251 (25%), Gaps = 38/251 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLI 53 + +++ + S + H++ +P+ ++ +++ + ++ Sbjct: 352 LVRDVTVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFLELVVPALPPGDARVA 411 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108 R + + T VD ++ + +E ++ + Sbjct: 412 RGAGQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWDMEPVSLAAVADHAVKAAAP 471 Query: 109 --------------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + ++LLNL A G V +S E Sbjct: 472 LAARKGLALTADIASDLPAVMADRDRLVQVLLNLIGNAVKFTT-SGWVRLSAVAVDGEVR 530 Query: 149 FSLKINGNLARFPE---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 ++ +G + F + + + + R+ E + Sbjct: 531 VAVADSGAGIAAKDLETIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESVP 590 Query: 204 DHNVVLSALLE 214 V +L Sbjct: 591 GQGSVFRFILP 601 >gi|255280004|ref|ZP_05344559.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] gi|255269777|gb|EET62982.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] Length = 380 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRL 69 L S + H++ +PI I N ELL E + I +SM + + Sbjct: 135 LKTDFVSNVSHEMKTPIAIIKNYAELLQTASVTEEQRREYAENIEKASMRLSNLISNILK 194 Query: 70 ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERAKI 118 + + ++ + Sbjct: 195 LNKLENQTIVPDPETYDVCRQLCECILQFEESWDDKELELQTEIEDIAMVEADESLLELV 254 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVEST 175 NL A +GG VT+ + S+ G F + G+ + Sbjct: 255 WNNLLSNAIKFTEKGGMVTVKQTSDEKTVTVSVTDTGCGMAPDSVKHIFDKFYQGDTSHS 314 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + + + L Sbjct: 315 KEGNGIGLALVKRVLELSDGNIQVFSREGEGSTFVVTLP 353 >gi|224369361|ref|YP_002603525.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223692078|gb|ACN15361.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 390 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 61/236 (25%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVM 50 N + L++L L + + H+I +P+ I N +L+ + Sbjct: 155 NQAKLMHRDKLISLGRLSASVVHEINNPLAGILNYAKLMIKMLKQGELDDQRRIRFAAHL 214 Query: 51 QLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105 L+ + L F R V + + + V Sbjct: 215 NLVASEAERISTIVSSLLTFSRKNEFTITPVSMDELVERSLVLARHRLELSGIELCVHVE 274 Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARF 160 E + + L ++ GG++ +S + + +G Sbjct: 275 KEIPLFRGDFNLLQQCLINLIFNGIDAMEGGGRLGVSAAFCPESKKVSLKVSDSGTGIDA 334 Query: 161 PEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + H + V + + + + + + Sbjct: 335 GNL-EHIYEPFFTTKDEGHGVGLGLSIVFGIMERHGGGVTVDSTPGRGSTFTLEIP 389 >gi|223938396|ref|ZP_03630290.1| signal transduction histidine kinase, nitrogen specific, NtrB [bacterium Ellin514] gi|223892965|gb|EEF59432.1| signal transduction histidine kinase, nitrogen specific, NtrB [bacterium Ellin514] Length = 453 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 80/235 (34%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-----------LDEVGIED 47 + ++ L +L L + + H+I +P+ AI L L++ + Sbjct: 215 LVESTAMIERQEKLASLGVLAAGVAHEIRNPLTAIKARLFTQQKALTVGSPELEDALVIG 274 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + +L + D+ + + ++D +++++ G+ Sbjct: 275 NEINRLERIVKDFLQFARPADPKLKLMSAEKTLRDVRDLMALQLERSSIDMKLELNSAGQ 334 Query: 108 KIDLSRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLAR 159 + + + ++L+NL A S+P+ VT S I ++ GN Sbjct: 335 ILADAAQIKQVLINLVQNAAESIPQKGTVTLRERKDVTRLNGQSVPVVILEVEDTGNGI- 393 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + + ++ L + + +L Sbjct: 394 SAEVQKRLFDPFFTTKDSGTGLGLSIAARIIQKHGGLLEFQTQVNRGTTFGIVLP 448 >gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 703 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 23/247 (9%), Positives = 60/247 (24%), Gaps = 36/247 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK L + + H+I +P+ I ++LL + + +E R + Sbjct: 292 MAKERAEAADRAKSAFL--ATVSHEIRTPLHGIIGMIDLLLDTALTEEQASYGRTIGELS 349 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSW 104 + + + G ++ + + + + + + + Sbjct: 350 RLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREV 409 Query: 105 TGEKIDLSRERAKILLNLFMVAHA-----------SLPRGGKVTISVQDSKNENIFSLKI 153 ++L+NL A ++ + + V + F + Sbjct: 410 PPFLRGDPIRLRQVLINLGGNAVKFTEKGKVALRIAMDSRAEQSDPVNEVARFLRFEICD 469 Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G E ++ + L + I Sbjct: 470 TGIGI-TDEVAPRLFQPFSQADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIPGLGT 528 Query: 208 VLSALLE 214 + Sbjct: 529 TFWFTMP 535 >gi|85859694|ref|YP_461896.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85722785|gb|ABC77728.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 614 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 67/232 (28%), Gaps = 22/232 (9%) Query: 4 NICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 L + L +L L + + H+I +P+ AI + + L E +E + Sbjct: 371 EFERRLEKAERLSSLGQLAAGVAHEIRNPLNAISMASQRLKREFMPAEPEKAEEFQNMAG 430 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTG 106 + + ++ S + + + E+ + ++ W+ Sbjct: 431 VIRDEIRRLNGIIEEFLTFSKSRRLDMRDYSVTEVLRKMTDLIREEAESRGITLKTEWSD 490 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPE 162 E + + + K+ LF + ++ + ++ I + G E Sbjct: 491 EPVIIPMDVDKLQQALFNLVKNAMESISGGGSITISLSNEDRHRRIIRIADTGCGMTEEE 550 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + + +L Sbjct: 551 VK-KIFNPEYTTKQKGLGLGLSLAHEIIRGHGGEIRVLSREKVGTTFELILP 601 >gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 614 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + + ++ + + + + H++ SP+ I LL + E ++ S Sbjct: 222 LERERAARIE-LERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSPEKIEQALES 280 Query: 57 SMSAII---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + V + I+ ++ + + Sbjct: 281 IERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISR 340 Query: 108 KIDL-------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +++ NL A P GG+V I ++ + + G Sbjct: 341 LNFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETNVQIQVIDTGTGISP 400 Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 F + + + V L + ++ + + L Sbjct: 401 EFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGKVSVASPGEGQGATFTVQLP 460 >gi|299137309|ref|ZP_07030491.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298600714|gb|EFI56870.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 656 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + L + + A + + I H+I +P+ A+ N L LL +D+ + + Sbjct: 421 RRIEQSLLQAEKIAATGRMAATIAHEINNPLEAVMNLLYLLRPKITDDDGRGYLATAEDE 480 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTGEKID 110 + GY + + R + + Sbjct: 481 LGRVSHIAKQTLGYYREHAAASLASLSVITEHALTIYEPRCAIAGIGIKKFFDSKTKVVF 540 Query: 111 LSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 E +++ NL + ++P GG V+ + +++ G Sbjct: 541 RRGEMMQVISNLIANSIYAMPTGGTLSVSVSDVRSQGEGIVLAIEDTGVGITPDVLPRVF 600 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII---DDHNVVLSALLE 214 T I + + R+ E +DH + L Sbjct: 601 EAFFTTRTTVGTGIGLFVAKQFVEGHGGRISIESRSDPEDHGTTVRIFLP 650 >gi|298483120|ref|ZP_07001300.1| two-component sensor histidine kinase [Bacteroides sp. D22] gi|298270637|gb|EFI12218.1| two-component sensor histidine kinase [Bacteroides sp. D22] Length = 482 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G V I + +N ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481 >gi|294643491|ref|ZP_06721301.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292641170|gb|EFF59378.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 479 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 301 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 302 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G V I + +N ++ G Sbjct: 362 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 422 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 478 >gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1560 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 63/241 (26%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59 + K + ++ + + + H++ +P+ A+ ELL E ++ +R S + Sbjct: 1174 LQKAMEQAQAADRAKSYFLATVSHELRTPLNAVIGFSELLQGGDVAAAEQLEYLRSISFA 1233 Query: 60 AIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + + + + V+ Sbjct: 1234 GNALLNLIYDVLDLSKLEADQLNLVLADTDAGQLVQEVVAVFRLKAMEKDLKLTVECVNL 1293 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLAR 159 + +++LNL A G +V I + G Sbjct: 1294 EQPLRLDNLRLRQVVLNLVGNAVKFTSAGSVSVRAVFQPDPGGETGMLIIRVADTGPGI- 1352 Query: 160 FPEKFTQIVDGNV-------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 PE +I D V + + + L + + E V + Sbjct: 1353 SPESRKKIFDPFVQGESTRGTHSYEGSGLGLAISQRLVNRMGGEIRLESELGSGSVFTVR 1412 Query: 213 L 213 + Sbjct: 1413 I 1413 >gi|237712780|ref|ZP_04543261.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262409729|ref|ZP_06086267.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22] gi|294808001|ref|ZP_06766778.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229447192|gb|EEO52983.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262352382|gb|EEZ01484.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22] gi|294444814|gb|EFG13504.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295084583|emb|CBK66106.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 482 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G V I + +N ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481 >gi|228920267|ref|ZP_04083615.1| hypothetical protein bthur0011_12830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839466|gb|EEM84759.1| hypothetical protein bthur0011_12830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 423 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQSEKKLSIQIASYRLDNFVRITFTDNGTGI-PRAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L ++ + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNEN-GTTFTISIP 409 >gi|228957833|ref|ZP_04119573.1| hypothetical protein bthur0005_13460 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801749|gb|EEM48626.1| hypothetical protein bthur0005_13460 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 423 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109 + + L + Q + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQSEKKLSIQIASYRLDNFVRITFTDNGTGI-PRAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L ++ + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNEN-GTTFTISIP 409 >gi|149192357|ref|ZP_01870561.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio shilonii AK1] gi|148833815|gb|EDL50848.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio shilonii AK1] Length = 592 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 64/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------VGIEDE 48 + + + + L L + + I H++ +P+ AI + E Sbjct: 353 LRQAHDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGQRFIDKNKVDRAKDNLQR 412 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---- 104 ++ L + + F + + S L + + RV + Sbjct: 413 IVALTERMAKISQQLKSFAKRSDANELSRIKLAPVIFSTIELIQPQLKSHRVTLDCKIGQ 472 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP 161 + ++L+NL A ++ + + +++ + + + +G Sbjct: 473 QDTLVQINPIQVEQVLINLLTNAMQAMHDSERKRLELTIEQGQTKVTIHIDDSGPGLDGN 532 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + ++ S L Sbjct: 533 SIAE-LFEPFYTTKENGLGLGLSISQQIIQNLNGKIRVARSPLGGARFSVELP 584 >gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1310 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 64/237 (27%), Gaps = 27/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK N + + + + H+I +P+ +I L + + D+ I S SA Sbjct: 540 AKEAAENANQAK--SEFLANMSHEIRTPMNSIIGMSSLALQTPLNDKQRGYIEKVSHSAE 597 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQVSWT 105 L + ++ + + ++ ++ I + Sbjct: 598 SLLNIINDILDFSKIEARKMDIENVPFMLPSLIHKVAHVLELKIEEKGLELIIDIDAEVP 657 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161 + + +ILLNL A +G + N FS++ G Sbjct: 658 QQVVGDPTRLRQILLNLGNNAVKFTQQGEIIIRAAHSKNNQDDNIIHFSVQDTGIGISKD 717 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + + L + E ++ + Sbjct: 718 KQNNLFQSFSQADTSTTRRFGGTGLGLAISKRLIQLMGGDIWVESEENKGSTFHFTI 774 >gi|116748449|ref|YP_845136.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697513|gb|ABK16701.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 557 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 78/243 (32%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 + + M+ + LL + HD + +G I EL + + + ++ I+ + Sbjct: 172 LLEEQYRQAQKMEAIGLLAGGVAHDFNNLLGVIMGYSELCLTTIHKESPLYDNIEHIKNA 231 Query: 57 SMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R VD + + E+++ I D +++ + + + Sbjct: 232 GLRAATLVRQLLAFSRKQILDPRVVDLNTIISETEKMLRRLIGEDIQLESTLEPDLWPVR 291 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDS---------------KNENIFSLKIN 154 + +++ + A ++P GG++TI + + + N Sbjct: 292 IDPSQLEQVILNLAVNARDAMPDGGRLTIRTANVTLDDSFAREQVEAVAGPYVLLEVTDN 351 Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + +I + + + V + ++ + S Sbjct: 352 GAGI-DKDTLRRIFEPFFTTKEKGRGTGLGLATVYGIIKQSSGHISVRSRPRCGTTFSIY 410 Query: 213 LEK 215 L + Sbjct: 411 LPR 413 >gi|77920349|ref|YP_358164.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77546432|gb|ABA89994.1| GAF sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 764 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 64/232 (27%), Gaps = 20/232 (8%) Query: 1 MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 + + + + AL + + H++ +P+ +I L E ++ Sbjct: 519 LRETQERLIQGEKMAALGETAASVTHELRNPLVSIGGFARRLARSLPEGTREQEYSGIIV 578 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106 + +R L F + D + + ++ + ED + V Sbjct: 579 REVRRMEEMLTNILGFSKKQMLCIADCDLIKVIEEVLVLEEDALREGAVRLVRELSDDLA 638 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ ++++NL A ++ + + ++ G Sbjct: 639 AIQGDEQKLRQVIVNLVDNARQAMRDGGILIVRAYRTSLRGDRAVAVEIEDTGGGIPAN- 697 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + ++ + + + L Sbjct: 698 ILRNIFNPFFTTRKQGTGLGLPIVHRIVEHHQGEIEVQNTE-RGARFVLRLP 748 >gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 771 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 22/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 A+ M L + + + H+I +P+ AI +LL+ E + E + LI + Sbjct: 532 ARQKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 589 Query: 57 SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + + M ++ + + Q++ K Sbjct: 590 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 649 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ N A + ++ + + S+K G +K Sbjct: 650 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 708 Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + H + E + L Sbjct: 709 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSKFTISLP 760 >gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC 27126] Length = 1033 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 24/216 (11%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL----------- 69 + H+I +P+ AI +L+ + +E + + SA L + Sbjct: 491 NMSHEIRTPMNAIIGFSDLMLGEALREEQKSHLTTINRSARSLLHLLNDILDSAKLDKGK 550 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--SRERAKILLNLFM 124 + + L + + V + V + ++L NL Sbjct: 551 LDLDYRDFLIREELDLVISTFWLEAKRKKVGLVLNVDDSVANGYRGVPERMRQVLNNLIG 610 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 A G+VTI+V+ + F + G E+ ++ D + Sbjct: 611 NAVKFT-HEGEVTINVKSDEKYVYFDVTDTGIGM-TQEQVERVFDPFSQADASMSRKYGG 668 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + L Sbjct: 669 TGLGTTISKQLVELMGGNICATSEKGKGTTFTFRLP 704 >gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56'] Length = 961 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ +S + + + H++ SPI AI +L E + Sbjct: 549 ARDEAERVSRVK--DDFVATLSHELRSPINAILGWARILRGRAPEPPTLARGLEVIERNA 606 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------------- 108 M + S D++ V + + E Sbjct: 607 RLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEAIQLAAETKGIAVASSIDPEA 666 Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++ NL A P GG++ ++++ + S+ G Sbjct: 667 SSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALRRAGAHAALSVTDTGMGIAPQFLPH 726 Query: 166 -----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 + D + I V L + + +H + L Sbjct: 727 LFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTVEVASQGEHLGATFTVTLP 781 >gi|153009454|ref|YP_001370669.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561342|gb|ABS14840.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 857 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 67/241 (27%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587 Query: 114 --ERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P K+ + +F ++ G Sbjct: 588 LGQFEQVAVNLAVNARDAMPDGGEITLRTRNVSTQEVAKLHYRDLPEADYVVFEVEDTGT 647 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706 Query: 215 K 215 + Sbjct: 707 R 707 >gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] Length = 1710 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 26/252 (10%), Positives = 66/252 (26%), Gaps = 39/252 (15%) Query: 1 MAKNICFNLSSMDLVAL---LC-----SRICHDIISPIGAIHNSLELLDEVGI-EDEVMQ 51 + + L A L + + H++ +P+ AI +LL E + Sbjct: 1224 LERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLLRQPQFSGEPSE 1283 Query: 52 LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 + + S +++ + + + + Sbjct: 1284 YLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAANKRLQ 1343 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNEN 147 ++ + + I + ++L+NL A G + + Sbjct: 1344 LEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFTSFGEVCLTVRSQPVPAEMSSNSCYL 1403 Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEII 202 F ++ G F E +I + +++ S + ++ E Sbjct: 1404 QFEVRDTGAGINFDEL-EKIFEPFIQTEAGEKVKQSTGLGLAISREFVELMGGKITVESQ 1462 Query: 203 DDHNVVLSALLE 214 H V + Sbjct: 1463 LKHGSVFQFTIP 1474 >gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] Length = 2415 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 N+ + ++ + I HD+ +P+ + ELL + + V + + Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106 + + + G + I + + V+ + Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLDTVEDLDSIDPDL 1994 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + +I +NL ++ P G ++ + + G E Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPVGSVTVRAIVEEDTPEKIRVTCKVADTGIGI-SEE 2053 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 + ++ + + + + R+ + + ++ L Sbjct: 2054 QLDRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|296185127|ref|ZP_06853537.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|296049961|gb|EFG89385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 487 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 76/235 (32%), Gaps = 28/235 (11%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEVMQLIRLS 56 L L S I H++ +P+ I ++L+LL+E E + + +I+ + Sbjct: 217 ALEYNKLRTEFFSNISHELKTPLTIILSALQLLNEKNSTHLNEKINENTEKKYIDIIKQN 276 Query: 57 SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S + + + + + V E + ++ E Sbjct: 277 SYRLLRLVNNIIDLTKIDSDFFDIQLKNLNVVEVVENTVLSVAEYIKSNGIKITFDTDVE 336 Query: 108 KIDLSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + ++ + + I+LNL A G + +S+ D ++ I S+K +G + Sbjct: 337 EKIMAIDIDQFERIILNLISNAIKFAKPEGNIWVSLYDKQDHLIISVKDDGKGIPKDKLP 396 Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V L ++ ++ + Sbjct: 397 IIFERFYQIDKSLSRECEGSGVGLAIVKSLVEKHGGKITVNSTLGVGSEFTMKFP 451 >gi|292670813|ref|ZP_06604239.1| sensor histidine kinase [Selenomonas noxia ATCC 43541] gi|292647434|gb|EFF65406.1| sensor histidine kinase [Selenomonas noxia ATCC 43541] Length = 419 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 65/221 (29%), Gaps = 24/221 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRL-- 69 + H++ +P+ + S +LL +V++ +R + + Sbjct: 195 QFAADASHELRTPLAVVLASADLLRSDTSITSPFLKQVIEDVRDEVKKMTKLVGDLLTVA 254 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120 +D + +++ F V ++ +L + +++L Sbjct: 255 RTDGSANQIKPVRMDLVAAAQKTIRIMRPFAEKKDIVIEEILPKQAELYADEQKIRQLIL 314 Query: 121 NLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNV------E 173 L A P G++T+ + ++ S+ G PE +I D Sbjct: 315 ILVDNAVKYTPEHGRITLCIDQAEKGYIHLSVADTGIGI-EPEHQERIFDRFYRVDKARS 373 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E L+ Sbjct: 374 RRMGGNGLGLAIAQEIVEAHDGTISVESEVGKGTTFHVSLK 414 >gi|146306001|ref|YP_001186466.1| sensor protein PilS [Pseudomonas mendocina ymp] gi|145574202|gb|ABP83734.1| Sensor protein PilS [Pseudomonas mendocina ymp] Length = 530 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 69/219 (31%), Gaps = 19/219 (8%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL---- 64 + L +L L + I H+I +P+GAI ++ +LL E ++ +L ++ + Sbjct: 305 LKLASLGRLTAGIAHEIRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIE 364 Query: 65 ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + R +D L D+++ + G + + ++ Sbjct: 365 NVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPADRQIHLETQGGSLQTRMDPHQLTQV 424 Query: 122 LFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 L + ++ S + + + +G PE+ I + Sbjct: 425 LTNLVQNGLRYSAKQHRIGQVWLRLFRDPSSDLPVLEILDDGPGV-PPEQEQHIFEPFYT 483 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + Y L N+ RL + + Sbjct: 484 TENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRIT 522 >gi|15605780|ref|NP_213157.1| histidine kinase sensor protein [Aquifex aeolicus VF5] gi|2982944|gb|AAC06560.1| histidine kinase sensor protein [Aquifex aeolicus VF5] Length = 339 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 8/212 (3%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + V L + H + +P+ I +LE L++ E +++I+ + +S + + L Sbjct: 127 QKLSSVGYLALGVAHQLNTPLATISLALEELEKKCGSCEEIEVIKNALISCKNTVDKLLL 186 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKILLNLFM 124 + D + +E V+E K V + ++LNL + Sbjct: 187 FARKDNNKDLVDTKKAVEDVLELLRVYAKERGVIIEKELESVYMFGNETDIRHVVLNLVL 246 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQ 182 A + RG KV + ++ E I ++ G E +I + + Sbjct: 247 NAIQASDRGKKVRVFLKKEGEELILIVEDEGKGIPPEEV-DKIFLPFYHGKDKREGSGLG 305 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + L Sbjct: 306 LAIVNDIVKSYGGKINLRSAPGKGSIFEVHLP 337 >gi|253564070|ref|ZP_04841527.1| FrrD [Bacteroides sp. 3_2_5] gi|251947846|gb|EES88128.1| FrrD [Bacteroides sp. 3_2_5] gi|301161630|emb|CBW21170.1| putative two-component sensor histidine kinase [Bacteroides fragilis 638R] Length = 479 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 + KNI L S S I H++ +PI AI SL+LL++ E Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKN 301 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + S I + + + G + + + ++IE I ++ + + Sbjct: 302 IRDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVD 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +L NL A G+V I V+ K ++ G Sbjct: 362 YPQEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGVRHKKEYIELYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + L+ Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478 >gi|229012616|ref|ZP_04169789.1| hypothetical protein bmyco0001_30590 [Bacillus mycoides DSM 2048] gi|228748639|gb|EEL98491.1| hypothetical protein bmyco0001_30590 [Bacillus mycoides DSM 2048] Length = 418 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 16/226 (7%) Query: 4 NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 I + + + + L + I H+I +P+ + +LL ++ + + + + + Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252 Query: 60 AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + T + +I + + K+ + + Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + L N+ ++ GG + I++Q K + + G + +I Sbjct: 313 NANTEKFKICLTNIIQNGIEAMKNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIK-RIA 371 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417 >gi|148264881|ref|YP_001231587.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter uraniireducens Rf4] gi|146398381|gb|ABQ27014.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter uraniireducens Rf4] Length = 351 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 20/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQLIRLSS 57 L + L A+ L + I H+I +P+G + +++ L++ VM+ I Sbjct: 119 LQAEKLFAMGQLATCITHEIGNPLGIMKSTMRFLNDHLTRMGGDLTMYSQVVMENIDRMH 178 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSR 113 +F R D L I +E V Sbjct: 179 ELLKDISEFSRPNKEQIVFHDICSSLSQILHFVEKECEGHGVVIEASIEDNLPIVCCNPH 238 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVD 169 ++ LNL + ++P GGK +++ + + + + +G + T I Sbjct: 239 RLKQVFLNLVKNSIEAMPNGGKFSVAAKRVDLDGKDAVLVEVTDSGIGISEKDMKT-IFK 297 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V + E+ R+ + +S LL Sbjct: 298 PFHTTKCNGNGLGLFIVRNIVREHNGRITVTSKEGVGTTVSILLP 342 >gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614] gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614] Length = 774 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 59/225 (26%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74 A L I H+I +P+ I ELL + + E +R + S L+ + Y Sbjct: 256 AFLA-TIGHEIRTPLNGILGMAELLAQKPLPAEESGYVRTITRSGRALLEMINEILDYAK 314 Query: 75 -------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 D + + + D ++ + + + + ++ Sbjct: 315 IEYGSQQSEEIIFRLDDLVRDTAAVVEGQVLEQNNDLKLHIDPALDGAFIKSDPTRLKRI 374 Query: 122 LFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKINGNLARFPEKFTQIVDGNV-- 172 L + ++ ++ ++ + S++ +G + + Sbjct: 375 LLNLLSNAVKFTENGSVWLEVTAGNVTDETLELNVSVRDSGIGIASDAQKQLFTAFHQVD 434 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + S + Sbjct: 435 SSISRRFGGTGLGLAICKQIVEAMQGTIGVSSTPGEGATFSFTVP 479 >gi|53711874|ref|YP_097866.1| two-component system histidine kinase [Bacteroides fragilis YCH46] gi|52214739|dbj|BAD47332.1| two-component system histidine kinase [Bacteroides fragilis YCH46] Length = 479 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 + KNI L S S I H++ +PI AI SL+LL++ E Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKN 301 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + S I + + + G + + + ++IE I ++ + + Sbjct: 302 IRDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVD 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +L NL A G+V I V+ K ++ G Sbjct: 362 YPQEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGVRHKKEYIELYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + L+ Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478 >gi|60680102|ref|YP_210246.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|265765240|ref|ZP_06093515.1| FrrD [Bacteroides sp. 2_1_16] gi|18033127|gb|AAL56997.1|AF329100_4 FrrD [Bacteroides fragilis] gi|60491536|emb|CAH06288.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|263254624|gb|EEZ26058.1| FrrD [Bacteroides sp. 2_1_16] Length = 479 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 + KNI L S S I H++ +PI AI SL+LL++ E Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKN 301 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + S I + + + G + + + ++IE I ++ + + Sbjct: 302 IRDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVD 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +L NL A G+V I V+ K ++ G Sbjct: 362 YPQEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGVRHKKEYIELYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + L+ Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478 >gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1099 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 60/237 (25%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + + + H+I +P+ AI ++L +D+ + + S+ Sbjct: 715 QAEKEKAQASERAKHQFLANMSHEIRTPMNAIKGMTDILLRRNPKDDQKEYLEGIKQSSD 774 Query: 62 IRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTG 106 L + + V+ + +++ + + + Sbjct: 775 SLLIIINDILDISKIEAGKVELENEPFSVVELVNNVHTIMQFKAEEKGLELLKDIPEENL 834 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +ILLNL A + V K F + G ++ Sbjct: 835 TVQGDATRLRQILLNLIGNAIKFTEKGVVTTSVKSEQSGEKVNVHFIISDTGIGI-DQDR 893 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + L + ++ E + Sbjct: 894 MDKIFKSFEQAYSDTSRKFGGTGLGLSISKKLVELHGGKIWVESEKGKGSQFHFTIP 950 >gi|319902368|ref|YP_004162096.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319417399|gb|ADV44510.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 294 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 58/232 (25%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 + + + L + + H+I +P+ AI +L + ++ I Sbjct: 52 LRQMNEVAEETNQLKNAFIANMTHEIRTPLNAIVGFTTMLAEMDNLDKATRMAFLKEINE 111 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSW---- 104 + S + + + + L + E+ + +QV + Sbjct: 112 NKDSLLQLVNDLLDYSKIEANTLEYNDEEVDVNTLIAEVCMAENTGSHPGGIQVEFVEKL 171 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + A+++ NL A +G Q S F + G + Sbjct: 172 PQCRLVVDRVRFAQVVGNLVRNALKFTEKGSVKIGCRQLSNRNFYFYVADTGCGIDEEGR 231 Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + E L Sbjct: 232 HAIFERFVKMNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283 >gi|262195899|ref|YP_003267108.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079246|gb|ACY15215.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 660 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 31/244 (12%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50 + + L M V L I HD + + AI EL + +++M Sbjct: 269 RRELEEQLRHAQKMKAVGQLAGGIAHDFNNLLTAIACHAELAQQSVESGSPAAFDLEQIM 328 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEK 108 IR ++ L F R V + I ++ I + + + G+ Sbjct: 329 HAIRHAAELTQQILVFSRRRVTQQKLVRVNDAVLGISTMLRPLIRANSEMITLLRAGGQV 388 Query: 109 IDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKI 153 + E ++++NL + ++P G + + S++ Sbjct: 389 RMDAGELEQVIVNLVVNGSNAMPEGGKITIETADLDIGTGDETHGVEVSAGAYVSISIED 448 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G E +I + + + + V + + + Sbjct: 449 TGTGM-TAEVKERIFEPFFTTKGPGEGTGLGLAIVYGVITRAGGYITVDSEPGRGTRFCI 507 Query: 212 LLEK 215 LL + Sbjct: 508 LLPR 511 >gi|257465491|ref|ZP_05629862.1| aerobic respiration control sensor protein [Actinobacillus minor 202] gi|257451151|gb|EEV25194.1| aerobic respiration control sensor protein [Actinobacillus minor 202] Length = 614 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 62/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69 L + I H++ +P+ I +L E + + + ++ ++SA+ Sbjct: 118 LMATISHELRTPLNGIIGLSRILLEGELAPKQREYLKTINISAVSLGHIFSDIIDLEKID 177 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERAKILLN 121 + + + ++ + ++ + ++++ N Sbjct: 178 SKRIELFNKPVEFIQLINDINHFANLMAGKKEIKFHLEYAKQLPHYINVDNARLSQVIWN 237 Query: 122 LFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS-- 178 L A P G +T+ + S + F + +G E+ D Sbjct: 238 LLSNAVKFTPEKGDITLKINQLSPSCFQFIVIDSGIGIAKEEQDKIFNMFYQSERSDGNK 297 Query: 179 ---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L E + ++ Sbjct: 298 AQGSGIGLAVSKHIAQLMGGDLTVESQLGQGSTFTLTIQ 336 >gi|229010735|ref|ZP_04167932.1| hypothetical protein bmyco0001_11900 [Bacillus mycoides DSM 2048] gi|228750409|gb|EEM00238.1| hypothetical protein bmyco0001_11900 [Bacillus mycoides DSM 2048] Length = 354 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57 +N N L+ + + I H+I +P+ A L+LL ++ +L Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDTCSEKERKLYIDIAINGIE 186 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ + L L I + ++ S + Sbjct: 187 QANHVLTDYLTFAKPSIEKEQQLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ + LLN+F ++P GG + +++ +K G + ++ Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGMDQGQIK-RLGSP 305 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 349 >gi|220931586|ref|YP_002508494.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] gi|219992896|gb|ACL69499.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] Length = 652 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 62/238 (26%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLI 53 K + L L + + H+ +P+ I ++L L++ + ++ I Sbjct: 382 KKLLEEELEYNKLRTEFFANLSHEFKTPLNVIFSALHLIEWSLDKNPLKKDKIKSYLKTI 441 Query: 54 RLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +S + + + + ++ I + Sbjct: 442 THNSYRLLRLITNLLDITKIDANSYQLNICNCDIVKIVKSAVNSVKGHINNKTRKIVFNT 501 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + +IL NL A G K+T+ ++D +K G Sbjct: 502 NVNEKIIACDPFDIERILYNLLSNAIKFTGEGDKITVEIKDRGQSLNIIVKDTGIGIPEE 561 Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 K + VD + + + L + + E L Sbjct: 562 MQDYIFKRFRQVDKSFRRNNEGSGLGLSLTKSLVELHGGSISIESKPGKGSTFIIKLP 619 >gi|157691651|ref|YP_001486113.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157680409|gb|ABV61553.1| possible sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 1126 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--S 57 ++ + S L A+ L + I H+I +P+ ++ L+L+ + + + +S + Sbjct: 901 KQSEKMLMKSEMLSAVGQLAAGIAHEIRNPLTSLKGFLQLMIQSKKYQKDYADVMMSEFN 960 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110 I +F+ L+ + + + +E+VI + VS Sbjct: 961 RLESIINEFLVLSRSKSVKFEPVHVNLLLEEVIMVVESQAVLKGVSIQKKLSPSLPNIQG 1020 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVD 169 + E ++ LN+ ++ V ++ + + G E ++ + Sbjct: 1021 IPNELKQVFLNILKNGIEAMDGVTGVIKVTSLMKDHQMMLIFEDQGKGIPEDEIG-KLGE 1079 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + + E + Sbjct: 1080 PFYTTKEKGTGLGLMMTIKIIESHGGTIRFESKSFEGTRVIITFP 1124 >gi|153810969|ref|ZP_01963637.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174] gi|149832857|gb|EDM87940.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174] Length = 469 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 71/240 (29%), Gaps = 25/240 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +AKN+ + + + S I HD SP+ +I +E + + ++++ +++ Sbjct: 228 LAKNLNYMADKLNRNGEYQRQFISNISHDFRSPLTSIKGYVEAMIDGTIPVEMQEKYLKI 287 Query: 53 IRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 I + + + + + D + E + Sbjct: 288 ISYEAERLEKLTRGLLTLNELDIQKRMLHIQPFDINSVIKATAASFEGSCTSRNILLELI 347 Query: 105 ----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A P +T+ + + S+K +G Sbjct: 348 LSGKELMAQADMEQIQQVLYNLLSNAIKFSPDNSTITLETTEKNGKIFVSVKDHGIGIPK 407 Query: 161 ---PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + D + V + H + + + LEK Sbjct: 408 ASLQKIWERFYKIDRSRGKDQKGTGLGLAIVKEILHAHGQHINVISTEGVGTEFIFTLEK 467 >gi|308069281|ref|YP_003870886.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305858560|gb|ADM70348.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 482 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 65/213 (30%), Gaps = 19/213 (8%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67 S I H++ +P+ +I E L+ + M++I + I ++ + Sbjct: 253 SSISHELRTPLTSIKGWSETLNSGGYDPEETKIGMKIISKETDRLIGLVEEILDFSKLEQ 312 Query: 68 RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLF 123 G+VD L + + V ++Q+ + + ++ LN+ Sbjct: 313 NAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHGDGNRLKQVFLNIV 372 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDI 181 A + +S+Q S++ G E ++ D + + Sbjct: 373 DNAIKFSHESSIIFLSLQRIDGNIEISVQDTGIGI-SAENLARVRDRFFQVDHQNGGTGL 431 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++L ++ L Sbjct: 432 GLAISQQFIERHHGQMLIRSELGAGTTITVSLP 464 >gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 820 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 21/252 (8%), Positives = 66/252 (26%), Gaps = 40/252 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLI 53 + ++I + S + H++ +P+ ++ +++ + + + Sbjct: 347 LVRDITVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLVAPALTEATPKTW 406 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106 R + + T VD ++ + +E ++ + + Sbjct: 407 RGAQQIRENLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLAETAGHAVRAVAG 466 Query: 107 ------------------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + ++ +NL A G V + +E Sbjct: 467 LAARKGISLENKLPANLPRILGDRDRLIQVFVNLLGNAVKFTEHGAIV-VEGSVDGSEIR 525 Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202 +++ +G+ + +I + + + + R+ E Sbjct: 526 VAVRDSGSGIAPADL-ERIFEKFKQAGDTLTEKPKGTGLGLPICRQIIERHGGRIWAESE 584 Query: 203 DDHNVVLSALLE 214 V L Sbjct: 585 PGQGSVFRFTLP 596 >gi|255535845|ref|YP_003096216.1| two-component hybrid sensor and regulator [Flavobacteriaceae bacterium 3519-10] gi|255342041|gb|ACU08154.1| two-component hybrid sensor and regulator [Flavobacteriaceae bacterium 3519-10] Length = 371 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 56/233 (24%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + I F + S H++ +P+ +I ++LL+ + ++ Sbjct: 134 LREEIEFRKEAERKKDEFISIASHELKTPMTSIKGYIQLLERSIEKNDIETTKIRLGKVQ 193 Query: 55 LSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + F + +E + + + Sbjct: 194 NQIEKLNLLVADLLDISKIESGKLKFNKKHFCYDEVLSHILEVMQQSNPHITIMKIGQVE 253 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++N A P ++ + + +++ G + Sbjct: 254 DSVYADEMRIEQVIINFITNAIKYSPGSEEIHVLTEIQDGHIYCAVRDFGIGMSPEHQNK 313 Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y + ++ + + L Sbjct: 314 IFDKFYRIEETSERFQGLGIGLYICQEIIGRHEGTIGVKSTPGQGSEFYFTLP 366 >gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 919 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 48/235 (20%), Gaps = 26/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H+I +P+ I ++ E+ + + L S+ Sbjct: 417 ARRQAEAASQAK--SGFLANMSHEIRTPLSGIIGLTQMTLTQNPRPEIRENLELILDSSR 474 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 D L + + R+ Sbjct: 475 SLLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTLGVRIDPQVP 534 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPE 162 +++ NL A +G + S++ G Sbjct: 535 AMVHGDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLARPGDPMLVSCSVRDTGIGIPEDR 594 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L + E + + Sbjct: 595 LHELFQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVESVPGQGSTFTFT 649 >gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1131 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 26/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL---------- 69 + + H+I +P+ I ++LL+ ++E + ++ + + + Sbjct: 760 ANMSHEIRTPLNGIMGMIQLLESGARDEEQHRTCAMALQATGRLTRLLSDILDLSRVEAG 819 Query: 70 -AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLF 123 + LG + + + S ++L+NL Sbjct: 820 KMQMRIEPFNLRDALGQSVDLFNPIAMQAGLEFRHHFDPALPEFVVGDSVRFQQVLMNLI 879 Query: 124 MVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVE 173 A +G S + +FS+ +G Sbjct: 880 GNAFKFTTKGFVAVEAHPLPSHESDSVRVLFSVADSGRGIEDAALSALFQPFSQVTRGFT 939 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + L + E S L Sbjct: 940 RDHQGAGLGLAITKRLIALMGGTMAVESEPGCGTTFSFSL 979 >gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 1238 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 56/219 (25%), Gaps = 23/219 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70 + +R+ H+I +P+ + ELL + + + S L + Sbjct: 563 SEFLARMSHEIRTPMNGVLGMTELLQRTRLTAKQRSFVDTVYRSGQTLLTIIDDILDFSK 622 Query: 71 ------FGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119 + L D+ ++E A R Q +IL Sbjct: 623 IEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVRLRQIL 682 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173 NL A RG +F++ +G P+ Q+ + Sbjct: 683 TNLVGNAIKFTERGQVELAVAYSDHGLVVFTIADSGIGI-APDVSAQLFKPFQQADSSTA 741 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + LA L E V + Sbjct: 742 RKYGGTGLGLVISRQLAEMMGGTLTVESAPGRGSVFTVT 780 >gi|313678938|ref|YP_004056677.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] gi|313151653|gb|ADR35504.1| integral membrane sensor signal transduction histidine kinase [Oceanithermus profundus DSM 14977] Length = 482 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 61/215 (28%), Gaps = 19/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L + + HD+ +P+ + LE L++ G + R + + + R+ Sbjct: 260 LVAGVSHDLRTPLAVLSGYLETLEQAGERLSAAERARYLAAARAQAARLARMTDDLFTLA 319 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------------------KIL 119 G + + V + + L Sbjct: 320 RLESGAWPFAPEPLALAELVQDVVLELRPRFEARGVALELAPPPGPLVVQGDAGLLERAL 379 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 +N+ + A P GG+VT+ + +++ E ++ G+ + + + + Sbjct: 380 VNVLVNALEHTPEGGRVTVRLAEAEGEARVAVADTGSGIAPEDLP-HLFERTFQRRDGGS 438 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ E L Sbjct: 439 GLGLAIAQQALRLHGGRVEVESAPGAGSRFEIKLP 473 >gi|260770756|ref|ZP_05879685.1| nitrogen regulation protein NR(II) [Vibrio furnissii CIP 102972] gi|260613993|gb|EEX39183.1| nitrogen regulation protein NR(II) [Vibrio furnissii CIP 102972] gi|315178796|gb|ADT85710.1| nitrogen regulation protein NR(II) [Vibrio furnissii NCTC 11218] Length = 348 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + LL + H+I +P+G + + +LL+ + + + + ++ A Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + + L + Q++E D ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGKKTSENLHLILEKVRQLVELEGRADLTIERDYDPSLPNILMDT 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I L + + + I Q K + NG Sbjct: 236 DQIEQALLNIVSNAAQILANQPHGVITLRTRTVHQANIHGQRHKLVARIEIIDNGPGIPL 295 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + V + L ++ ++ E + L Sbjct: 296 -ELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGR-TTFTIYLP 347 >gi|253998768|ref|YP_003050831.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4] gi|253985447|gb|ACT50304.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4] Length = 906 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLS 56 A++ ++ S L L S I HD+ +P+ ++ + L + L + Sbjct: 662 ARDALISMESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAPDMPSDRHAQLETLYDQA 721 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEKID 110 + + + +A GSV +E+V ++ R++V+ E Sbjct: 722 FRMQQLVVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPL 781 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKF 164 L + ++ NL A P + IS Q E ++ G + F Sbjct: 782 LQFDAVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIF 841 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G VES + + + L E H L Sbjct: 842 QKFTRGKVESPQPGVGLGLSICKAIIQAHGGALWAEAQQPHGTRFIFSLP 891 >gi|253690258|ref|YP_003019448.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756836|gb|ACT14912.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 453 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54 + S + L+A LL + + HD+ +P+ I + E++ + E + Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGKEDDYLAESINKDIEE 276 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ T D +G++ + + S Sbjct: 277 CNAIIEQFLDYLRTGQEMQTEVADLNAIMGEVVASESGYERQIDSEFATGELLVRISSLS 336 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171 + LNL + A KV+ F ++ +G F V G+ Sbjct: 337 IKRAALNLVVNAARYGNGWIKVSTGRDLQ--RVWFQVEDDGEGIAPDQLKHLFQPFVRGD 394 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + V + + L + + + A L Sbjct: 395 SARTTSGTGLGLAIVQRIIDAHNGVLDVGSSERGGLCVRAYLP 437 >gi|163814356|ref|ZP_02205745.1| hypothetical protein COPEUT_00507 [Coprococcus eutactus ATCC 27759] gi|158449991|gb|EDP26986.1| hypothetical protein COPEUT_00507 [Coprococcus eutactus ATCC 27759] Length = 347 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + E I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEELFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIDDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + + E + L K Sbjct: 308 GLALVKRIVDSSGGTIKAENREYGGCRFVIELPK 341 >gi|222056478|ref|YP_002538840.1| multi-sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221565767|gb|ACM21739.1| multi-sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 767 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/244 (9%), Positives = 63/244 (25%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 + + M+ + L I HD + + +I EL + ED+ ++ Sbjct: 380 LLERQLSQAQRMEAIGTLAGGIAHDFNNSLASIITCTELARDDVAEDDPVRELLDVVLKS 439 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 L F V + + +++ ++ + + Sbjct: 440 SYRGRNLVKQILTFSCQVEQERQPVHVERIIHECLKLLRASFPTSITIRHDICSQPGMVM 499 Query: 113 RER---AKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLKI 153 + +I++NL + ++ G S S++ Sbjct: 500 ADPTQIHQIIMNLCTNSGHAMHDSGGFLDIRLANVDLDTAAVSGFPDLPSGRYLRLSVQD 559 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G+ +I D + + + V + + ++ Sbjct: 560 TGHGM-DQATMERIFDPFFTTKTRGEGTGLGLSVVHGIVKNHGGSIMVTSEPGKGASFHI 618 Query: 212 LLEK 215 L + Sbjct: 619 FLPR 622 >gi|78063729|ref|YP_373637.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77971614|gb|ABB12993.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 1032 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + I H+I +P+ I +LELLD ++ ++ Sbjct: 504 LVQQLEEAVRAADSANAAKSSFLAA-ITHEIRTPLNVILGNLELLDRSALDASQHGRVQT 562 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 +A L + ++ + + IE + I Sbjct: 563 LRAAASGLLGLVSDILDFSKIEAGAMTVEAIEFDVIGVIERTLGAFAPVAKAKGLSLFCE 622 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKING 155 + S ++L NL A G + E +++ G Sbjct: 623 IDASDAQRMRGDPTRLGQVLGNLLSNAIKFTASGHVLVRVSVASAGCGDAELSIAVEDTG 682 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 ++ + + LA R+ + + Sbjct: 683 IGIAGADRHKLFKAFSQVDASITRRYGGTGLGLALCDRLAAAMGGRIDVASVPGTGSRFT 742 Query: 211 ALLE 214 + Sbjct: 743 LTVP 746 >gi|118580773|ref|YP_902023.1| signal transduction histidine kinase NtrB [Pelobacter propionicus DSM 2379] gi|118503483|gb|ABK99965.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 916 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 20/243 (8%), Positives = 64/243 (26%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53 + + ++ + L + HD + +G I + E+L +Q Sbjct: 534 LREEQQAQSRKLEAIGQLAGGVAHDFNNMLGGIIGNAEMLALKLGSGHPLQKHVSTILTA 593 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ L F R +D +G+ ++E + ++ + Sbjct: 594 SENAAGLTQRLLIFSRKGNVVIAPMDLHHAIGNALTLLEHSLDKGITIRRELNAAPSTIK 653 Query: 113 RERAKILLNLFMVAHASLPRG-------------------GKVTISVQDSKNENIFSLKI 153 + +++ ++ + + + + + ++ Sbjct: 654 GDPVQMVNSIINLCVNAGHAMPEGGVLTISTENVELSEAYCRDSSFPIEPGCFVRIGIRD 713 Query: 154 NGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + +I + + + V E+ + + V + Sbjct: 714 TGEGI-PQDLLPRIFEPFFTTKGVGKGTGLGLAAVYGTIREHHGCICVQSEKGVGTVFNL 772 Query: 212 LLE 214 L Sbjct: 773 CLP 775 >gi|118578927|ref|YP_900177.1| histidine kinase [Pelobacter propionicus DSM 2379] gi|118501637|gb|ABK98119.1| histidine kinase [Pelobacter propionicus DSM 2379] Length = 250 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 71/226 (31%), Gaps = 18/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61 + + + + L + + I H++ +P+ I ++ ++ L E + + V +++ + A Sbjct: 18 LKQLVHNEKMAELGRMSAGIVHELNAPLSVIASAAQMILRETDVPEFVREMVGRIGVEAQ 77 Query: 62 IRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------L 111 + L+ + + I L + +R + Sbjct: 78 RLSHLARGMLSLSCRDSTLQEVDINLTIRFVLDFISYEAARRAVLVVPKLDFRLPVILLD 137 Query: 112 SRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + +ILLNL M A ++ G + E + NG E +I Sbjct: 138 GNKLKQILLNLVMNALQAMEDQGGVLRVETGSPLPGEVDIVINDNGPGI-PAESLEKIFQ 196 Query: 170 GNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + +L + R+ + L Sbjct: 197 PGFTTKKEGEGTGLGLFVTRMLVEQLGGRIEVDSRISEGTTFRVTL 242 >gi|307316770|ref|ZP_07596212.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306897392|gb|EFN28136.1| histidine kinase [Sinorhizobium meliloti AK83] Length = 641 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 62/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSL----------ELLDEVGIEDE 48 + + + L + + + H+I P+ I + + + Sbjct: 410 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTITAAENMES 469 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 + +L +F R G + + F +++ + Sbjct: 470 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 529 Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162 + ++L+NL A ++ I V+ + ++ NG + Sbjct: 530 GLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGI-AAD 588 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ S D + + + + E + L+K Sbjct: 589 VREELFAPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESSP-SGTTFTVNLKK 640 >gi|317051553|ref|YP_004112669.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316946637|gb|ADU66113.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 360 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 31/243 (12%) Query: 1 MAKNICFNLSSMDLVALL---------CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 + ++I L ALL S + H+I +P+ AI + L+ E V+ Sbjct: 104 LIRDISKRLDIAKNNALLFDYHYIERILSEVAHEIKNPLSAILGASRLIQESEDS-SVVP 162 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L + S A+ + + +I +++++ + + E + Sbjct: 163 LAGIISEEALRLENMLSSIQSFARPPQLEPAAVNIHRILKNLVQRQLPMLDEKHIEVREY 222 Query: 112 SRER-----------AKILLNLFMVAHASLPRGGKVTISV---------QDSKNENIFSL 151 ++ LNLF A + + I Sbjct: 223 YDPSIPEIYADEEKLYQVFLNLFKNAMEASTLHSSIAIITGVSLGDSPGTGYNTWIFIRF 282 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + G+ P+ ++ + + + + + ++ E ++ Sbjct: 283 QDQGSGV-VPDAKDKLFMPFFTTKTQGSGLGLPISMKIVRAHGGKIEIESTVGIGTSVTV 341 Query: 212 LLE 214 L Sbjct: 342 FLP 344 >gi|317152599|ref|YP_004120647.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942850|gb|ADU61901.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 876 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 19/251 (7%), Positives = 60/251 (23%), Gaps = 40/251 (15%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------------- 47 ++ L+ +D + + L S I H++ +P+ +I +L + + Sbjct: 617 ESANQRLTELDTIKSALVSSISHELRTPLTSIRGFAKLTRKEFVRHFLPLAESPLAEAKG 676 Query: 48 ----EVMQLIRLSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIA 95 + + +I + ++ + + +A Sbjct: 677 ERIRQNLGIIETEGERLTRLINDFLDINRIESGKVVWNDQFLNPCEVVHQAANALAGALA 736 Query: 96 VDKRVQVSWTGEK-----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 +++ + + ++L+NL A G + + + Sbjct: 737 ARPAIKLKLSLPPTVPLIHADPDKVQQVLINLLNNACKFTAEGFIKISVTGNVDS-LTIT 795 Query: 151 LKINGNLARFPEKFTQIVDGNVES-------TIDSHDIQFYYVILLAHENKIRLLPEIID 203 + G ++ + + + + Sbjct: 796 VSDTGMGIGPEDQPNIFEKFYKARAGDTLVAEARGTGLGLSICKEIVEHYGGSIWVDSTL 855 Query: 204 DHNVVLSALLE 214 S L Sbjct: 856 GQGSAFSFTLP 866 >gi|255523429|ref|ZP_05390398.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296184711|ref|ZP_06853122.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255512887|gb|EET89158.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296050493|gb|EFG89916.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 798 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 28/239 (11%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRL 55 + + + + I H++ +P+ I +S +LL+ ++++++ Sbjct: 528 EAKLKMEKTLKMHEQFLTNISHELKTPLNVIFSSAQLLELYLKNKSVEENKEKIIKDTYF 587 Query: 56 SSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + +K F +L V + + + + Sbjct: 588 IRQNCYRLIKLIGNIIDLSKIESGFFKLNLSNENIVSVVEDIVQSVSEYVESKDLSIIFD 647 Query: 102 VSWTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + I ++ +++LNL A G ++ +++ D S+K NG Sbjct: 648 TDVEEKIIACDPDKIERVVLNLISNAIKFSDPGDEIYVNIADKNETVEISVKDNGIGIDK 707 Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + I V + + ++ E L Sbjct: 708 NHLNAIFERFNQVDKSFTRNAEGSGIGLCLVKSIVELHGGKISAESKLGEGSTFKIELP 766 >gi|197335745|ref|YP_002156440.1| tmao reductase sytem sensor tors [Vibrio fischeri MJ11] gi|197317235|gb|ACH66682.1| tmao reductase sytem sensor tors [Vibrio fischeri MJ11] Length = 958 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 59/233 (25%), Gaps = 22/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+++ + L + + H+I +P+ + + ELL G+ + Q + + + S Sbjct: 445 ARDLAEQANRAKSAFL--ATMSHEIRTPLNGVLGTGELLRGSGLTAQQKQYVDIINRSGE 502 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105 L + Y+ + + ++ I + V Sbjct: 503 NLLDLLNDILDYSKIEAGHLSIRKKNFSVQSMITDVHHLFSSRAQQKGITLSVNAPVDTP 562 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I ++L N A G +F + G E T Sbjct: 563 EWWIGDCSRIRQVLNNFVGNAIKFTHTGSVTIQLSLILDTTLLFEVIDTGVGIAEHEIDT 622 Query: 166 QIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E I+ LE Sbjct: 623 LFDVFTQAEEGMKVSGGTGLGLAISQRLIEAMDGEIGVESIEGQGSTFWFSLE 675 >gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492] gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492] Length = 1034 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL + E + +I ++ Sbjct: 659 LIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATENETERKEFISIIETNN 718 Query: 58 MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + + + + + V Sbjct: 719 QLLLQLVSNILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRLQTGVALQFVPEVPVC 778 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++L+NL + A G++ + E F +K G E + Sbjct: 779 YVQTEHNRLSQVLINLLVNAAKFTE-KGEIMFGYKIRGEELYFYVKDTGIGISL-ENQKK 836 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 I + + I + + + K R+ E + + Sbjct: 837 IFERFTKVNTFIQGTGLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIP 887 >gi|296270011|ref|YP_003652643.1| PAS/PAC sensor signal transduction histidine kinase [Thermobispora bispora DSM 43833] gi|296092798|gb|ADG88750.1| PAS/PAC sensor signal transduction histidine kinase [Thermobispora bispora DSM 43833] Length = 363 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 17/229 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L S + H++ SP+ ++ L +++ + Sbjct: 129 RDASARSRAERSRADLVSTVAHELRSPLTSVKGFTATLLAKWDRFTDAQKLVMLETVNAD 188 Query: 57 SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + VD I + R ++ GE Sbjct: 189 ADRVTRLITELLDVSRIESGRLEIHRQIVDIPARARRIIAGRVAAGEPEDRYRLEVRGEL 248 Query: 109 IDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP--EKFT 165 + ++ KI L + ++ G VTI V+ ++ S++ G ++ Sbjct: 249 PETWLDQDKIDQILANLVENAVRHGRGTVTIVVEPVESGVAVSVRDQGEGIAPELADRVF 308 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V L + + + +L Sbjct: 309 RQFWRGNKRRRGGTGLGLFIVKGLVEAHGGTIGVQRAPGGGAEFRFILP 357 >gi|291514043|emb|CBK63253.1| PAS/PAC sensor signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 555 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 65/215 (30%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF----MRLAFG 72 S + H++ +PI +I SL+LL + + E QL+ S+ L + + Sbjct: 340 STVSHEMKTPISSILMSLQLLGDDRLGTLNGEQKQLVTSIKESSDRLLSITGELLNMTQI 399 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAV--------DKRVQVSWTGEKIDLSRERAKILLNLFM 124 TG + + + ++I+ + V+V + + L + KI + Sbjct: 400 ETGKLKLIPKVTKPIELIDYAVKATQVLAERFCCFVEVDYPEKISKLFVDNEKIAWVITN 459 Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDSH 179 A P ++ + + ++ G + + + Sbjct: 460 LLSNAIHHSPERSRIIVGAVQREKAVEIYVQDFGRGIDPRYHKSIFERYFRVPGTKVQGS 519 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E S LL Sbjct: 520 GLGLAISKEFVEAHGGTISVESEIGRGSRFSILLP 554 >gi|229168155|ref|ZP_04295883.1| hypothetical protein bcere0007_31140 [Bacillus cereus AH621] gi|228615399|gb|EEK72496.1| hypothetical protein bcere0007_31140 [Bacillus cereus AH621] Length = 418 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 16/226 (7%) Query: 4 NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 I + + + + L + I H+I +P+ + +LL ++ + + + + + Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252 Query: 60 AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + T + +I + + K+ + + Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + L N+ ++ GG + I++Q K + + G + +I Sbjct: 313 NANTEKFKICLTNIIQNGIEAMKNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIK-RIA 371 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417 >gi|218661744|ref|ZP_03517674.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli IE4771] Length = 472 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 72/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + L+ + Sbjct: 69 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLMEIK 128 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 129 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 188 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151 + ++L+NL + A ++P GG S +++ + + Sbjct: 189 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 248 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE +I + + + V + ++ + PE Sbjct: 249 TDTGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 307 Query: 210 SALLEK 215 L + Sbjct: 308 RVFLPR 313 >gi|217979631|ref|YP_002363778.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217505007|gb|ACK52416.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 839 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S + A+ L + HD + + AI +LL + I+ +++ A Sbjct: 458 QSQKMQAIGQLAGGVAHDFNNVLTAIIGFSDLLLANHRPTDPSFRDIMQIKQNAIRAAGL 517 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116 ++ + ++ LGD+ ++ + ++ + Sbjct: 518 VRQLLAFSRRQTLRPQVLQLGDVLSELQMLMRRLVGEKIHLELRHGRDLWLIRADLNQFE 577 Query: 117 KILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++++NL + A ++ + + ++ G+ P Sbjct: 578 QVIVNLIVNARDAMPDGGEILLKTRNVAPHECDGFEEKSLPAADYVAIEVEDCGHGV-PP 636 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I + + + V + + + + LL + Sbjct: 637 EVRDKIFEPFFTTKEVGKGTGLGLAMVYGIVKQTGGFVFCSSPPGKGATFTVLLPR 692 >gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 389 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL D+ + E + LI+ ++ Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213 Query: 59 SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106 + + + GS L L ++ A + ++W Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNA 273 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 +IL +L A +G + + F + G + Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + ++ + E + Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382 >gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 1083 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 58/235 (24%), Gaps = 28/235 (11%) Query: 6 CFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR- 63 ++ + + + H+I +P+ I L +L++ ++ I S+ Sbjct: 437 KEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDLDSTQQDYIETIQTSSETLL 496 Query: 64 ----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEK 108 + D + + + + + + Sbjct: 497 VVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGLELNMLINSAIPSCL 556 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFPEKF 164 + + +I+ NL A G I +++ + F ++ G E Sbjct: 557 VGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKETNTEVQLYFEIRDTGIGMNEEEIS 616 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + + + + + + L Sbjct: 617 -KLFKPFSQADSSSTRKYGGTGLGLAICKKIVEMMGGTISVKSVKNRGTTFCFDL 670 >gi|321314046|ref|YP_004206333.1| two-component sensor histidine kinase YclJ [Bacillus subtilis BSn5] gi|320020320|gb|ADV95306.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis BSn5] Length = 472 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MAK + + + + H++ +P+ I+ +E L+ +D+ L Sbjct: 229 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288 Query: 53 IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + + +K ++ + + Q + +Q Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 348 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V +IL+N+ + G ++ K ++ G Sbjct: 349 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 407 Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + V L ++ + + + L Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 466 >gi|303245618|ref|ZP_07331901.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492881|gb|EFL52746.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 487 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 16/225 (7%) Query: 5 ICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60 + L S L A+ L I H+I +P+ AI LL + + + + + Sbjct: 254 LERRLQKSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGEASREKASIILSES 313 Query: 61 IIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLS 112 + ++ + VD ++ + V + + Sbjct: 314 RRLDEILKDITNFARPTVSRPGEVDLADVARRTTALMRHALESQGITVTLDLSPNAPVAR 373 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + L+N A ++P GG + +S + S+ +G P+ Q+ + Sbjct: 374 GDPETLTQCLVNCLKNAMEAMPDGGHIMVSTGLRDGRALLSVTDDGPGI-PPDILPQVFN 432 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + + + L Sbjct: 433 PFFTTRDKRAGLGLAMTKKILEDLGGSVELESVPGNGTTVVLSLP 477 >gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 676 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 31/234 (13%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + + + + + H+I +P+ AI +LL + G + + + + L + Sbjct: 287 EASRMKSAFLANMSHEIRTPLNAIMGLSQLLLKTGPSPQQRECLETMRSAGEGLLVVLND 346 Query: 70 A-----------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSR 113 VD L ++ +++ + Sbjct: 347 VLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPV 406 Query: 114 ERAKILLNLFMVAHASLPRGG-------KVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +ILLNL A P G +D+ F ++ G E + Sbjct: 407 RLKQILLNLLSNAIKFTPSGRVVLAAALPYPPKAEDAPTPVQFRVRDTGPGI-PEELRER 465 Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIR-LLPEIIDDHNVVLSALL 213 I + V+ + L L + L Sbjct: 466 IFEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVDSQPGKGSTFHFTL 519 >gi|265751905|ref|ZP_06087698.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263236697|gb|EEZ22167.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 616 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 69/220 (31%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + + H+I +P+ AI ++ E +E +Q + + + + Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETENAEERLQYYDIVEKNNMRLQELINE 310 Query: 66 -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V D++ + + + +S +R ++ Sbjct: 311 ILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPGVELVFEESDPSLVISTDRNRL 370 Query: 119 LLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVEST- 175 + + K +IS + E +F + G+ +K +I D + + Sbjct: 371 FQVFSNLIGNATKFTAKGSISFGYKLTEKEIVFHIADTGSGI-SDDKIDKIFDRFIMANN 429 Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + ++ + + + L Sbjct: 430 QVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1375 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 60/247 (24%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K + L++ L A S + H+I +P+ + L+LL+ + E + I Sbjct: 978 RKKVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLESTSKDAEQDEYI 1037 Query: 54 RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + S+ + A + V E + +D Sbjct: 1038 EAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFELAVKEKGLKLD 1097 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLK 152 + + +IL NL A G + +F + Sbjct: 1098 FVIDELLPARLVGDQIRLQQILFNLVGNAIKFTETGDVRVEACHLPCSNDDIQRVLFIVS 1157 Query: 153 INGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G G+ + V L + L + + Sbjct: 1158 DTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSLAIDSTEGTGT 1217 Query: 208 VLSALLE 214 L Sbjct: 1218 TFYLSLP 1224 >gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44] gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44] Length = 441 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 61/233 (26%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MA ++ + + + H++ +P+ I E + + + + MQLI Sbjct: 203 MAHSLETEDAKRK---EFLANVSHELRTPLSYIKGYSEAILDGVAKGEQQSKFMQLIHKE 259 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + ++ + + Sbjct: 260 AGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLETYELKWTEKQLRISKDLDPD 319 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164 + ++L NL A + G + I ++ N ++ G Sbjct: 320 IIVMIDEDRMQQVLHNLLDNAIRYTNQNGSIAIRLEKKDNSCELRIEDTGIGIDSEHLEQ 379 Query: 165 --TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + V + + ++ E + L Sbjct: 380 LGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQVESEKGKGTTVIITL 432 >gi|221308190|ref|ZP_03590037.1| hypothetical protein Bsubs1_02123 [Bacillus subtilis subsp. subtilis str. 168] gi|221312512|ref|ZP_03594317.1| hypothetical protein BsubsN3_02109 [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 472 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MAK + + + + H++ +P+ I+ +E L+ +D+ L Sbjct: 229 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288 Query: 53 IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + + +K ++ + + Q + +Q Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 348 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V +IL+N+ + G ++ K ++ G Sbjct: 349 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 407 Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + V L ++ + + + L Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 466 >gi|212691341|ref|ZP_03299469.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855] gi|237712212|ref|ZP_04542693.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|237726358|ref|ZP_04556839.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|212666094|gb|EEB26666.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855] gi|229434884|gb|EEO44961.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|229453533|gb|EEO59254.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 616 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 69/220 (31%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + + H+I +P+ AI ++ E +E +Q + + + + Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETENAEERLQYYDIVEKNNMRLQELINE 310 Query: 66 -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + V D++ + + + +S +R ++ Sbjct: 311 ILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPGVELVFEESDPSLVISTDRNRL 370 Query: 119 LLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVEST- 175 + + K +IS + E +F + G+ +K +I D + + Sbjct: 371 FQVFSNLIGNATKFTAKGSISFGYKLTEKEIVFHIADTGSGI-SDDKIDKIFDRFIMANN 429 Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + ++ + + + L Sbjct: 430 QVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1263 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 60/241 (24%), Gaps = 31/241 (12%) Query: 4 NICFNLSSMDLVA----LLCS----RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 L L A L S + H+I +P+ AI ELL + I+++ Sbjct: 878 ERTKELEHAKLRAEESDQLKSSFLMNMSHEIRTPMNAILGFSELLKDKDIDEKDRNEFIE 937 Query: 56 SSMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 S + ++ +G V + I++V+ + + S + Sbjct: 938 IIGSNGRSLLVLIDDILDISLIQSGRVKLRNEVFYIDEVLNELKDFYRLKTTSLVSVELE 997 Query: 109 ----------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 S ++L NL A +G + F + G Sbjct: 998 DVELFKGLKLNADSVRFRQVLNNLLGNALKFTEKGSIRFGCKPRNGEAL-FHVVDTGLGI 1056 Query: 159 RFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ I L + E V L Sbjct: 1057 DKIEQKRVFDAFYKIENDSSKLFPGTGIGLSICRKLISGMGGDIWVESQPGEGSVFYFTL 1116 Query: 214 E 214 Sbjct: 1117 P 1117 >gi|254425864|ref|ZP_05039581.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196188287|gb|EDX83252.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 401 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 69/234 (29%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + ++ L + S I H+ +P+ I ++LL + ++ ++ Sbjct: 126 LQQKQRDLTAAKQLKSRFISAIAHEFHNPLHVISAVVQLLLRKGETFSVEKRQDSLRRVQ 185 Query: 55 LSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ + + + VD + + +++ G Sbjct: 186 VAVVRLTHMMNELLAFNRNASTQATFQPKVVDLKAFCQTVLEDATLVNEGIEQITFQVDG 245 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ + + L A P G +++ +Q + + + +G ++ Sbjct: 246 DLEEVCIDTELVRTILKNLLSNAVKYSPAGSPISLRIQRHERQVTIEVTDSGRGIPKEDQ 305 Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T +D + V ++ + D + +L Sbjct: 306 STLFEAFFRARNVDTVKGTGLGLSIVKQCVDLHQGTIDVRSQLDQGTTFTVVLP 359 >gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 764 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/239 (8%), Positives = 53/239 (22%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H+I +P+ + ELL + + +E S Sbjct: 205 ARERAEAANRAKSAFL--ANMSHEIRTPMNGVVGMAELLSDTSLSEEQKLYANTIKNSGE 262 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105 + D + +I +++ + Sbjct: 263 ALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTARDKGLTMLVDYDLFLP 322 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + ++ G Sbjct: 323 TRFVGDRGRIRQVMTNLAGNAVKFTNEGHVTLRVTGISNPDEGTCSVHCLIEDTGIGIPA 382 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + N + + L + E + + Sbjct: 383 DKVDHVFGEFNQVEDERNRKFEGTGLGLAISKKLIELMDGEIWVESDEGEGSCFGFRIP 441 >gi|187930858|ref|YP_001901344.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gi|187728902|gb|ACD30065.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] Length = 535 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + + + +L S H+ +P+G I + L +E IR Sbjct: 296 LQETLDKERRMAELQRNFVSMASHEFRTPLGVIDGQAQRLMRMRDALPPETLEERCGKIR 355 Query: 55 LSSMSAIIRLKFMRLAFGY-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + + + L + ++ + +D+ V+ Sbjct: 356 AAVQRMTHLMDHLLDSSHWLDSTTPAAMRRTDFPLAALLHEVCEMHRESTPSARIDECVE 415 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R + NL A P G V++ V+ + +++ G Sbjct: 416 ADEPNTFFGDARLLFQAFSNLVGNAVKYSPPGTPVSVRVRSDADGVSVTVEDRGMGIPER 475 Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + V G + + Y V L+ ++ + + + L + Sbjct: 476 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSTFNVFLPR 532 >gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120] gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] Length = 575 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/247 (8%), Positives = 64/247 (25%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53 + + ++ ++ + + H++ +P+ A+ +LL + + ++ I Sbjct: 325 LEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAADLNLSGEFTSDLETI 384 Query: 54 RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101 + + + Y D + + ++ ++ I + + Sbjct: 385 NSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVVTVKPTIEKNNNLLEIYC 444 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--------NIFSLKI 153 G ++LLNL A G ++ ++ F++ Sbjct: 445 DEHLGTMYADQTRMRQVLLNLLSNAAKFTTNGRIKLTVRREKEDFLPEMPFGAISFTVSD 504 Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + Q+ + ++ + Sbjct: 505 TGIGMSPSQ-QQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQLGLGS 563 Query: 208 VLSALLE 214 + L Sbjct: 564 TFTVYLP 570 >gi|16077444|ref|NP_388258.1| two-component sensor histidine kinase YclJ [Bacillus subtilis subsp. subtilis str. 168] gi|221317449|ref|ZP_03598743.1| hypothetical protein BsubsJ_02128 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321711|ref|ZP_03603005.1| hypothetical protein BsubsS_02139 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396953|sp|P94414|YCLK_BACSU RecName: Full=Sensor histidine kinase yclK gi|1805446|dbj|BAA09008.1| yclK [Bacillus subtilis] gi|2632677|emb|CAB12184.1| two-component sensor histidine kinase [YclJ] [Bacillus subtilis subsp. subtilis str. 168] Length = 473 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MAK + + + + H++ +P+ I+ +E L+ +D+ L Sbjct: 230 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 289 Query: 53 IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + + +K ++ + + Q + +Q Sbjct: 290 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 349 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V +IL+N+ + G ++ K ++ G Sbjct: 350 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 408 Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + V L ++ + + + L Sbjct: 409 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 467 >gi|134299384|ref|YP_001112880.1| nitrogen-specific signal transduction histidine kinase NtrB [Desulfotomaculum reducens MI-1] gi|134052084|gb|ABO50055.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 653 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 13/221 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + L +++V + + I H+I +P+ ++ L+LL + L Sbjct: 431 MERELA-RLDRLNIVGQMAAGIGHEIRNPMTSVRGFLQLLKNKDECVKYTDYFNLMIEEL 489 Query: 61 II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + D L L + Q + V+ ++Q + + Sbjct: 490 DRANSIITEYLSLARRQGANLKMQNMNDILDALHPLIQSDANNCNVNLKIQKETVPDILL 549 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +E +++LNL ++P GG + + Q + + S++ G ++ Sbjct: 550 NEKELRQLILNLVRNGLDAMPEGGTLILKTQKKGKKVVLSVQDQGKGI-AHSIMDKLGTP 608 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 V + + + +A +K ++ Sbjct: 609 FVTTKDNGVGLGLATCYSIASRHKANIIVSSSS-RGTNFMV 648 >gi|295107993|emb|CBL21946.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 468 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 75/240 (31%), Gaps = 25/240 (10%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52 +AKN+ + ++ S I HD SP+ +I +E + + ++++ +++ Sbjct: 227 LAKNLNYMADKLNRSGEYQRQFISNISHDFRSPLTSIKGYIEAMIDGTIPVEMQEKYLKI 286 Query: 53 IRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVS 103 I + + + + D + E + +++ Sbjct: 287 ISYETERLEKLTRGLLTLNELDIQKRMLNIQPFDINGVIKATAASFEGSCTSRNILLELI 346 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +G ++ + +I L+ A P +TI + + S+K +G Sbjct: 347 LSGRELLAQADMEQIQQVLYNLLSNAIKFSPDNSTITIETTEKNGKIFVSVKDHGIGIPK 406 Query: 161 ---PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + D + V + + + + LEK Sbjct: 407 ASIHKIWERFYKIDRSRGKDQKGTGLGLAIVKEIIKAHGQHINVISTEGIGTEFIFTLEK 466 >gi|291528761|emb|CBK94347.1| Signal transduction histidine kinase [Eubacterium rectale M104/1] Length = 499 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 71/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + KN +++ +L S I HD+ +PI A+ E + + ++ V + Sbjct: 251 LKKNAEEKVTNESENRVLISNIAHDLKTPITAVKGYAEGILDGVANTPEKVDKYVRTIYN 310 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + T + + I + V Sbjct: 311 KANDMDKLINELTLYSKIDTNRIPYNFAKINVTDYFNDCVEEIGLDLEAKNIRLSYENHV 370 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + +++ N+ + + + + I + D + ++ NG Sbjct: 371 DSNVLIIADPEQLRRVINNIVGNSVKYMNKTQSYIDIRINDVGDFIQVEIEDNGRGINQR 430 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + ++ ++ + + ++ K Sbjct: 431 DMPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKEGDGTTMFFVIRK 489 >gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 389 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL D+ + E + LI+ ++ Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213 Query: 59 SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106 + + + GS L L ++ A + ++W Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNA 273 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 +IL +L A +G + + F + G + Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + ++ + E + Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382 >gi|229008408|ref|ZP_04165870.1| hypothetical protein bmyco0002_52090 [Bacillus mycoides Rock1-4] gi|228752866|gb|EEM02433.1| hypothetical protein bmyco0002_52090 [Bacillus mycoides Rock1-4] Length = 368 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 84/222 (37%), Gaps = 11/222 (4%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57 ++ + M++V+ L + I H++ +P+ + +LL + E + + Sbjct: 139 RSKLVKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPDLPQESREQYIEHILGELN 198 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLS 112 + +I ++ A + VD+++ +++++I + + ++ + + Sbjct: 199 RAQVIIDDYLTFAKPASQKVDNIVIDQELKRIISMMMPLCNMNSINVSENLVTGSITGNT 258 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LNL + ++P GGK++I +N+ +K +G E+ + + Sbjct: 259 QHFQQCFLNLIKYSIEAMPNGGKLSIKSSACENKITIVIKDSGIGM-TQEQINRFGEPYF 317 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L I + L+ Sbjct: 318 STKTRGTGLGTMVAVKIIETMNGTLDINSIVNKGTTLTITFP 359 >gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 676 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 K++ ++ + + + H+I +P+ I ++LLD +++ ++L Sbjct: 286 KSLIRATKQAEIANIAKSEFLANMSHEIRTPLNGIMGMIQLLDGTPVGADQNKYIELALT 345 Query: 56 SSMSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 S + + + + + I + + + + + Sbjct: 346 SCNRLTRLLSDILDLSRIEAGMMEIHESKFRFADLRNSILGLFAVESLTKAVTLKCIIDP 405 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNL 157 + E I +IL NL G ++ +F++ G Sbjct: 406 TIHPEVIGDEGRVLQILFNLVGNGLKFTKEGSVTVEITPLGSEKNNDYRVLFTVSDTGIG 465 Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + V L H + + + ++ + Sbjct: 466 IHEDHLKNLFKPFVQIEKSYTRKYQGAGLGLSIVKKLVHLMGGSIEVDSVVGEGTSMNVV 525 Query: 213 LE 214 L Sbjct: 526 LP 527 >gi|258405093|ref|YP_003197835.1| histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797320|gb|ACV68257.1| histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 801 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 21/231 (9%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K + + + L A+ L + + H+I +P+G I +ELL +D+ + ++ Sbjct: 569 EKQMLQQVQRAEKLSAVGKLAAGLAHEINNPLGVILCYVELLRTTVQDDQALSDVQTIEK 628 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWT-----GE 107 A K ++ + S G I +V + + + + Sbjct: 629 HAKQAQKVVQDLLNFARRKPSPKGACHINEVVESIVDVFSVQTAAREITLETDLGEGVPT 688 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165 +I+ NL M A ++ + + + + NG + Sbjct: 689 VNGTCSILEQIISNLLMNAMDAVDPAEGRIVIQTRQEAPDTVRVRITDNGPGI-SKDDME 747 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V L E R+ E + Sbjct: 748 KIFDPFYTTKSVGAGTGLGLAVVYGLVEELGGRIDVESK--AGASFTIRFP 796 >gi|254453815|ref|ZP_05067252.1| sensor histidine kinase/response regulator [Octadecabacter antarcticus 238] gi|198268221|gb|EDY92491.1| sensor histidine kinase/response regulator [Octadecabacter antarcticus 238] Length = 778 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 65/243 (26%), Gaps = 32/243 (13%) Query: 3 KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 KN+ + S + A+ L + HD + + AI +LL D+ + + I Sbjct: 394 KNLEMQFVQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDGDYADLVQIHQ 453 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKIDL 111 ++ A + + +I L + ++ + + + + Sbjct: 454 NANRAAALVGQLLAYSRKQNLQPEVIDLRNTLSDSTHLLNRLVGERVTLTLDHDPRVSPI 513 Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153 ++ ++ L A ++P GG + Sbjct: 514 RADKRQLEQVLMNLVVNARDAMPEGGNIRIETGNTVLVEGLSRDRVTVPPGRYVELRVHD 573 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G ++ + + + + + + + + S Sbjct: 574 TGTGIPEDKRVKRF-EPFWTTKKTGEGTGLGLSTAYGIIKQTGGYIFVVSTTGVGTTFSI 632 Query: 212 LLE 214 L+ Sbjct: 633 LIP 635 >gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905] gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905] Length = 591 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 29/238 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIR 54 M + L + + + H++ +PI + E L + +E+ ++I Sbjct: 357 MTEQHRL----EKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDLEERNEITKIIY 412 Query: 55 LSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------- 101 S + + + I + ++ Sbjct: 413 DESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHIRLLFDSE 472 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L NL A G VT+ V+ S++ G+ Sbjct: 473 FNDDAMINIDEDRIEQVLTNLVDNALRHTEEGS-VTVKVEQEPTFAKISVQDTGHGIPQD 531 Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + + ++ + + + L Sbjct: 532 DLPYVFERFYKADKARTRSKGGTGLGLAIARNIIKAHSGNIMVDSVLKEGTTFTFYLP 589 >gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 785 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 54/221 (24%), Gaps = 18/221 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + + H+I +P+ AI +LL +E + + ++ I L+ Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPSAETAEEKKLYSGIINQNSDILLQLIND 479 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKEGVTLVFDNEEEDLLMEGDQNRI 539 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173 +++ N A G++ + +K G EK I + V Sbjct: 540 MQVITNFLTNASKFT-YEGEIRFGFGRMDKDIRVYVKDTGIGI-ESEKVDHIFERFVKLN 597 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + ++ + + + Sbjct: 598 SFAQGTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP 638 >gi|206890234|ref|YP_002248566.1| sensory box sensor histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742172|gb|ACI21229.1| sensory box sensor histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 729 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 70/224 (31%), Gaps = 22/224 (9%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAI 61 L +L L + + H+I +P+ I ++L E I + + + Sbjct: 503 EKLASLGTLAAGVAHEINNPLAIILGFTDILLEKTSPESQEYDILKTIEKQATNAKRIVE 562 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAK 117 L F+R V+ + + V+ + I+++ + + E + Sbjct: 563 NLLSFVRHKEHKEQIVNINECIETVLDVMNNTISLNNIELKKQLQQDLPYVKGDAGELQQ 622 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI- 176 + N+ A + GG +T+S + + + G E +I D + Sbjct: 623 VFFNIINNAIYVMKGGGVLTVSTKYDGHWLEVCISDTGCGI-SKEHRQRIFDPFFTTKEV 681 Query: 177 -DSHDIQFYYVILLAHENKIRLLPEII-----DDHNVVLSALLE 214 + + + ++ + E ++ L Sbjct: 682 GKGTGLGLWVSYNIIKKHNGIITFETRTKEEAEETGTKFIIRLP 725 >gi|206562088|ref|YP_002232851.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] gi|198038128|emb|CAR54076.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] Length = 1010 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 59/237 (24%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + L S + + + I H+I +P+ A+ +LELLD+ + + +A Sbjct: 512 RADAQRALDSANRAKSTFLATISHEIRTPLNAMLGNLELLDKAPDPSRQKPRLHAVTSAA 571 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEK 108 + L + T + L I++ + +++ Sbjct: 572 RMLLDMLNNVLDMTKIEADRMTLEATGFRIDELMRDVADLFEPVAGARGIALRIDVDPAV 631 Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE 162 +I +NL A RG + +G + Sbjct: 632 THTYLGDPMRVRQIAVNLVSNAIKFTDRGAVALSVSASGGGATPVTIRVSDSGIGMTADQ 691 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I LA R+ + + L Sbjct: 692 LAHVFEPFAQADESIARRFGGTGIGLALSYKLAESMGGRIEADSVPGVGSTFVVTLP 748 >gi|166030476|ref|ZP_02233305.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC 27755] gi|166029728|gb|EDR48485.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC 27755] Length = 470 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 63/219 (28%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + HD SP+ +I +E + + ++ + + +I + K + + Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAIADGTIPPEMQGKYLNIILFETERLTDLTKDLLTLNEF 308 Query: 74 TGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKID-----LSRERAKILLN 121 L + + + K++ + + R+ ++L N Sbjct: 309 DTKNLLLDKVPFDLHEMIKNVAASFEGRCTQKKISIELVFARKHLKVVADKRKIQQVLYN 368 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177 L A + +TI + ++ S+K G + + ++ D Sbjct: 369 LLDNAIKFSDQDSIITIETTERGDKIYTSVKDYGIGIPRNALNKIWERFYKSDLSRGKDK 428 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + L K Sbjct: 429 KGTGLGLAIVKEAIQAHGENINVVSTEGVGTEFIFSLPK 467 >gi|170726077|ref|YP_001760103.1| histidine kinase [Shewanella woodyi ATCC 51908] gi|169811424|gb|ACA86008.1| histidine kinase [Shewanella woodyi ATCC 51908] Length = 608 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 +++ + + L + L + I H+I P+ AI + + L + V I Sbjct: 358 LSETQDELIQAAKLTVIGSLSASINHEINQPLAAIKSYAQNTLTLLSRNKTEHVKDNIHT 417 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSW 104 + +T + I+ I+ K + + Sbjct: 418 IISLTNRLATIVSQFKSFTRKSQGDDSATNIELCIQDAMTIIQPEIDKQGVELKLITSTE 477 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163 E ++L+NL A ++ R K + ++ +G + + Sbjct: 478 HYEIWGDDIRLQQVLVNLMSNAILAMERSKVKRITIRIEKGEMLCIKIQDSGPGVQDSQM 537 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + D + L Sbjct: 538 EKIFEPYYTTSDRQGLGLGLSISRRIIESMQGSIEVSNAVDGGAIFEICLP 588 >gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 2161 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 60/236 (25%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--SSMSAI 61 +I + + S + H++ +P+ +I ++LL + + S Sbjct: 1911 DITREVEADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKLNEEQLSYLSVVKSNT 1970 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 RL + G +D + + I + + T Sbjct: 1971 HRLMNLINDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHT 2030 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKF 164 + +++LNL A G V + + + NG PE+ Sbjct: 2031 PPVMADETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGI-SPEQQ 2089 Query: 165 TQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ E S ++ Sbjct: 2090 QHLFRRFYRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIP 2145 >gi|49183301|ref|YP_026553.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49177228|gb|AAT52604.1| sensor histidine kinase, putative [Bacillus anthracis str. Sterne] Length = 340 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 98 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 157 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L D I + + Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 217 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 218 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 277 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E I + K Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 334 >gi|329115712|ref|ZP_08244429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus parauberis NCFD 2020] gi|326906117|gb|EGE53031.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Streptococcus parauberis NCFD 2020] Length = 445 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 21/223 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 L S H++ +P+ +I E + DE ++ E + +I S+ ++ Sbjct: 214 EKLNMDFISNASHELRTPVTSIKGFAETIKSMPQDEEVLKKEFLDIIYNESLRLEHIVEH 273 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIE---------DFIAVDKRVQVSWTGEKIDLSRERAK 117 M + + E + + + + ++ Sbjct: 274 MLTLSKVKKTQLQKTDIDLNEFLQYIGNSLKHQLQQKHLHLKYDLEANVIIESDKYLLSQ 333 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172 I+LNL A GG + + +++K+ +K G E +I + Sbjct: 334 IILNLLSNAIRYTEDGGDIMVITRETKDNITICVKDTGIGISQLEI-ERIFERFYRVNKG 392 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + + L Sbjct: 393 RSRQSGGTGLGLSIVKELSQILSGKISVSSQLGQGSIFTLTLP 435 >gi|302038538|ref|YP_003798860.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606602|emb|CBK42935.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 651 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57 M + + L L + + I H+I +P+ I ++ LL D+ D + + Sbjct: 401 MQSRLR---RAERLATLGQVAAGIAHEIRNPLVGIGSTTSLLLDDTDPTDARRPDLAVIL 457 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------SWTG 106 + + Y + + D+ Q++++ + V Sbjct: 458 QETKRLDRIVNQIIDYARPREIVAFAFDMAQLVQEVMKVLDEPLTRKQATIRLSAPDAPY 517 Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++LLN+ A + P + + + ++ G Sbjct: 518 TIQADRDQLKQVLLNVLQNAIEASPSGGTTTVTLVQQARGVEPGLEVTVADRGTGISPTH 577 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + Sbjct: 578 LPHVFEPFFTSGKPQGTGLGLAICRNILEAHGGEIALDSEVGRGTTVRVWAP 629 >gi|283851683|ref|ZP_06368962.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573013|gb|EFC20994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 838 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/252 (8%), Positives = 62/252 (24%), Gaps = 40/252 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLI 53 + ++I + S + H++ +P+ ++ +++ + + + Sbjct: 361 LVRDITVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFADLVAPALAEADPRTW 420 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109 R + + T VD ++ + +E ++ + Sbjct: 421 RGAQQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWNMAALSLAEVADHAVKAATP 480 Query: 110 ---------------------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 ++ LNL A G+V + E + Sbjct: 481 LAARKGLVLANQVPPTLPLVLGDRDRLVQVFLNLIGNAVKFTA-TGRVDVEAALDGPEIL 539 Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202 +++ G + +I + + + + R+ E Sbjct: 540 VTVRDTGPGIAAGDL-ERIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESE 598 Query: 203 DDHNVVLSALLE 214 L Sbjct: 599 GGAGSAFRFTLP 610 >gi|239831952|ref|ZP_04680281.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824219|gb|EEQ95787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 858 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 S + A+ L I HD + + AI S +LL + I+ ++ Sbjct: 469 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 528 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 A ++ + ++ L D+ + +A + + Sbjct: 529 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWSVKAD 588 Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 + ++ +NL + A ++P GG++ + +F ++ G Sbjct: 589 LGQFEQVAVNLAVNARDAMPEGGEITLRTRNVPMQEAAKLHYRDLPEADYVVFEVEDTGT 648 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + + + L Sbjct: 649 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 707 Query: 215 K 215 + Sbjct: 708 R 708 >gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 58/217 (26%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL---------- 69 + + H++ +P+ I +LL ++ + S + Sbjct: 631 AILSHELRTPLNPILGWSQLLKTGKLDKDKTDEALKSIERNAKLQVDLIDDLLDVSRILR 690 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLF 123 D + + + + + + K+ +I+ NL Sbjct: 691 GKLTLNVTTVNLADIISAALETMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLL 750 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178 A P+GG+V + ++ + + G + DG+ Sbjct: 751 SNAIKFTPQGGEVVVQLEQIGSMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGG 810 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V L + + + + L +L Sbjct: 811 LGLGLAIVRHLVELHGGTVEADSPGEGQGTTLKVILP 847 >gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061] gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061] Length = 593 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + + E+ Q+I Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAGSEEEKKEIAQIIYD 410 Query: 56 SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103 S+ + + A G + + D E++ E + Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQV 470 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++ NL A P GG+V SVQ ++ +K +G+ + Sbjct: 471 DEPYFVLDPDKIEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + ++ + + + + Sbjct: 531 PFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPR 587 >gi|218437687|ref|YP_002376016.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218170415|gb|ACK69148.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 419 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 60/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLE--LLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + H++ +P+ AI N+ + LL+ + + ++ I + S I + + Sbjct: 200 FTADASHELRNPLAAIRNNAQFGLLEPIDPHQQQTSLENIDQIAQSMGILVSNLLFLARN 259 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKILLN 121 G +D + I + Q + + N Sbjct: 260 EGKLDPKALSLVDLESWLQPIIEEYTHQAEAKGLSLTYQLPQTRVMLKINPDLMRQAIAN 319 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176 L A P GG V+++V I ++ +G PE F + Sbjct: 320 LLSNACRYTPSGGTVSLNVDVQTGWVILEVRDSGIGIPEPELSRIFERFYRVDPVRSRQT 379 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L Sbjct: 380 GGFGLGLAIAQQIVQAHGGEITATSRLEQGSTFQIKLP 417 >gi|182436429|ref|YP_001824148.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464945|dbj|BAG19465.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 509 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55 + K + + + + + H++ +P+ AI E+L++ + M L+ Sbjct: 260 LEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVS 319 Query: 56 SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + + + + + Sbjct: 320 ETRRLNDLVENLMEVTRFDAGTARLVLDTVDVADQVTACIDARAWLDAVNLDAERGMMVR 379 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 R IL NL A V + V+ E + ++ +G P F + Sbjct: 380 LDPRRLDVILANLIGNALKHGG--SPVDVRVRTEGEELVIEVRDHGPGIPEDVLPHVFDR 437 Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + AH + + D V L + Sbjct: 438 FYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPDGGAVFELRLPR 487 >gi|172041314|ref|YP_001801028.1| two-component system sensor kinase [Corynebacterium urealyticum DSM 7109] gi|171852618|emb|CAQ05594.1| two-component system sensor kinase [Corynebacterium urealyticum DSM 7109] Length = 529 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 55/210 (26%), Gaps = 18/210 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--SAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ ++ EL +D M + R+S + ++ + Sbjct: 306 SHELRTPLTSVRGYAELYRSGATDDADMVIGRISDEAERMGLLVEDLLALVRMDEGRPLQ 365 Query: 81 IGLGDIEQVI----------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 D+ ++ + + + +++ NL A Sbjct: 366 NQRVDVLELTLRAADGARASFPGRNIGVENHYGSIPVVMGDANRLHQVISNLLTNALKHA 425 Query: 131 PRGGKVTISV-QDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTIDSHDIQFY 184 V IS+ + S ++ +G P F + + + Sbjct: 426 GEDANVKISLLKTSPELVTIDVQDDGEGIPADALPHLFERFYRPDGSRSRASGGSGLGLS 485 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V L + + + L Sbjct: 486 IVQSLVKAHGGAITVDSTVGEGTTFRVQLP 515 >gi|197121582|ref|YP_002133533.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196171431|gb|ACG72404.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 601 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 59/211 (27%), Gaps = 15/211 (7%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----------FMR 68 + + HD+ +P+ AI+ S LL G + + SA + Sbjct: 390 AIVSHDLKNPLEAIYLSSALLLRSGAAPRLRRHAETIQRSAARMDRLIRELLDLSSIEAG 449 Query: 69 LAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFM 124 + + + + + G + + +R ++L NL Sbjct: 450 RLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGAREPVPCDRERILQVLSNLVG 509 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A PRGG VT+ + E ++ +G + + + Sbjct: 510 NALQFTPRGGHVTVRATLAPAEARVEVRDDGPGIAPAQLRRVFDRYWKSGSRRGSGLGLS 569 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L + R+ E L + Sbjct: 570 IAKGLVEAHGGRIEVESRLGAGSTFRFTLPR 600 >gi|121535018|ref|ZP_01666836.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306431|gb|EAX47355.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 369 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 60/236 (25%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 M++ + + L L + I H++ +P+ I +LE + E + + Sbjct: 135 MSRALA---ENNRLRKRLLADIAHELKTPLSVIQGNLEGMLEGVVETSPEQLHSLYEETV 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGE 107 + + G L + + + + D + + E Sbjct: 192 YLNKIINELRELSLAEAGQLTLERQLTDVNPLVSRAVNMLKPLADEKKIKLACSLQHVPE 251 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEK 163 ++L NL A P GK+ S++ NG + Sbjct: 252 ISIDVMRINQVLYNLLSNAVRYTPANGKIEAVTAVVNLDSREYVAISIRDNGKGISADDL 311 Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L + ++ + + L Sbjct: 312 PHIFEHFYRADFARDRKSGGSGIGLAIVKQLVELHGGKVEAKSELGKGSEFTVYLP 367 >gi|150388490|ref|YP_001318539.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149948352|gb|ABR46880.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 496 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +++ + +L S I HD+ +PI +I +E + + E M + Sbjct: 243 LKESLESQQQYEENRKILISNISHDLKTPITSIKGYIEGIKDGVADTPEKMDKYIGTIYK 302 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------------- 105 + + +D D + D ++++ Sbjct: 303 KAEDMDHLIENLFLLSKLDLQKLPFDFKVFDIVGYLKDIGEELNFDLKKKQIQLSLKLPE 362 Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF-- 160 +++ N+ R ++ K + + ++ NG Sbjct: 363 ENIMINADGNNLRRVITNVVDNCIKYADRTPIEIHLTLKNRKEDVLVEIQDNGRGISKEA 422 Query: 161 -PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + E+ + E + + L K Sbjct: 423 LPHIFDDFYRADPSRNANTVGSGLGLAIFKKIIEEHDGTVWIESEVNQGTRVYFTLPK 480 >gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 660 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + K S L + + + H+I +P+ AI +LL ++ ++E +Q+I ++ Sbjct: 280 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 339 Query: 58 MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +V + + + + V T Sbjct: 340 ELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 399 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+IL N A G + + + ++ G +K Sbjct: 400 CTVRLDKNRLAQILTNFVTNAIKYTS-KGMIEMGYEKIDGNIRLYVRDTGIGI-PEDKKD 457 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E D + A+L Sbjct: 458 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508 >gi|240171668|ref|ZP_04750327.1| PhoR [Mycobacterium kansasii ATCC 12478] Length = 477 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ I EL + D ++ I + + + + + Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLMLARLDVQRPLE 317 Query: 81 IGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFMVAHAS 129 D+ + D + + + T E + ++L NL A Sbjct: 318 HHQVDLLALASDAVHDAQAIDPERTITLEFLEGPGTPEVLGDDARLRQVLSNLVANALQH 377 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184 P +T+ V ++ + + G + F + + + Sbjct: 378 TPASADITVRVGTEGDDAVLEVADRGPGMSQEDASRVFERFYRTDSSRARASGGTGLGLS 437 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + L + Sbjct: 438 IVDSLVRAHGGAVSLATAPGEGCCFRVTLPR 468 >gi|228951934|ref|ZP_04114032.1| hypothetical protein bthur0006_13480 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807857|gb|EEM54378.1| hypothetical protein bthur0006_13480 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 423 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESISPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|229069110|ref|ZP_04202402.1| hypothetical protein bcere0025_13170 [Bacillus cereus F65185] gi|228714055|gb|EEL65938.1| hypothetical protein bcere0025_13170 [Bacillus cereus F65185] Length = 423 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESISPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|229078741|ref|ZP_04211295.1| hypothetical protein bcere0023_14040 [Bacillus cereus Rock4-2] gi|228704614|gb|EEL57046.1| hypothetical protein bcere0023_14040 [Bacillus cereus Rock4-2] Length = 429 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 251 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 252 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 311 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 370 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 415 >gi|206967933|ref|ZP_03228889.1| sensor histidine kinase [Bacillus cereus AH1134] gi|229189638|ref|ZP_04316653.1| hypothetical protein bcere0002_13160 [Bacillus cereus ATCC 10876] gi|206736853|gb|EDZ54000.1| sensor histidine kinase [Bacillus cereus AH1134] gi|228593902|gb|EEK51706.1| hypothetical protein bcere0002_13160 [Bacillus cereus ATCC 10876] Length = 423 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409 >gi|160894764|ref|ZP_02075539.1| hypothetical protein CLOL250_02315 [Clostridium sp. L2-50] gi|156863698|gb|EDO57129.1| hypothetical protein CLOL250_02315 [Clostridium sp. L2-50] Length = 460 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + + + + H++ +P+ AI EL++ D ++ Sbjct: 225 REQHNDIMENAQMRQEFTANVSHELKTPLTAISGYSELIENGMAADGDVRRFATEIHRNS 284 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------TGE 107 RL + +D +E++ +A + Sbjct: 285 NRLLTLINDIIRLSELDVTENAPSMERIDLCAVARSNVDMLMLSAEKHNVTLKFSGQPSY 344 Query: 108 KIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPE--- 162 + +++ NL A +VT+ + + + +K G Sbjct: 345 IMGNKMMMEELVYNLTDNAIRYNKPDGTVEVTVYSYEKDHSVVMKVKDTGIGIPEEHLGL 404 Query: 163 KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V + ++ +L + ++ + Sbjct: 405 VFQRFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAKLDITSEPNVGTEITITFQ 458 >gi|27383256|ref|NP_774785.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27356430|dbj|BAC53410.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 579 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 67/247 (27%), Gaps = 36/247 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + ++++ + + H++ +P+ ++ +++E L ++++I Sbjct: 334 MTNALYSRIEAIEM---FAADVAHELKNPLTSLRSAVETLPLARNENSRARLLEVIEHDV 390 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQ 101 + + VD LG + V + A + Sbjct: 391 KRLDRLISDISDASRLDAELQRQDAIPVDLRRLLGTLVSVANETKLGHDVAVEARFEGRG 450 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + T +++ NL A + G KV ++ + + E + +G R Sbjct: 451 PTDTFAVTGHDSRLGQVVSNLLSNAQSFSEAGSKVRLTCRRVRGEIEIVVDDDGPGIRDD 510 Query: 162 EKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNV 207 + + + + R+ E Sbjct: 511 ALERIFERFYTDRPHQGFGQNSGLGLSISKQIVDAHGGRIWAENRPGPADEDGAPTVAGA 570 Query: 208 VLSALLE 214 L Sbjct: 571 RFVVRLP 577 >gi|332655315|ref|ZP_08421055.1| PAS/PAC sensor signal transduction histidine kinase [Ruminococcaceae bacterium D16] gi|332515820|gb|EGJ45430.1| PAS/PAC sensor signal transduction histidine kinase [Ruminococcaceae bacterium D16] Length = 475 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 19/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAIIRL 64 S + S + H++ +P+ AI E L + + M +I + + Sbjct: 249 QSEKTQSEFISSVSHELRTPLTAITGWAETIQSGELRDPKDVRKGMDIIVSEARRLTNMV 308 Query: 65 KFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDL 111 + + + +D L D +F + + Sbjct: 309 EELLEFSRMSDGRFTLSVEPLDLKAELEDAVYTYREFFRREGIELTYQDCPEEAVPISGD 368 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-QIVDG 170 ++ NL A G ++ +S+ + + ++ G E + Sbjct: 369 PERLRQVFCNLLDNAGKHGGSGKRIDVSIAQEEEFAVIRIRDYGPGIPEEELPHVKYKFY 428 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + ++ L + +++ L Sbjct: 429 KGSSKARGSGIGLAVCEEIVTRHEGTLDIGNAEGGGCLVTLRLP 472 >gi|301052938|ref|YP_003791149.1| sensor histidine kinase [Bacillus anthracis CI] gi|300375107|gb|ADK04011.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 466 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + ++K G + + Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458 >gi|262394817|ref|YP_003286671.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sp. Ex25] gi|262338411|gb|ACY52206.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Vibrio sp. Ex25] Length = 601 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L L + + I H++ +P+ AI + E L + + V + Sbjct: 357 LRLTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYERVEDNLTR 416 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103 S + + + + + + Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGNELAQSRLFPVIASVKELMKPALKSARVTLETQVPE 476 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + ++L+NL A +L + + + NG Sbjct: 477 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVQLSIEQDEHAGLVWIHVDDNGPGLG 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + RL + + S L Sbjct: 537 DFSLSD-LCEPFLTTKQNGLGLGLSISQQILASMNGRLCAQNREQGGARFSLCLP 590 >gi|302550248|ref|ZP_07302590.1| phosphate regulon sensor kinase PhoR [Streptomyces viridochromogenes DSM 40736] gi|302467866|gb|EFL30959.1| phosphate regulon sensor kinase PhoR [Streptomyces viridochromogenes DSM 40736] Length = 386 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 52/240 (21%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 139 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 198 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G R + Sbjct: 199 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIHAYVAAGQPADRFLLRVQQPL 258 Query: 109 IDLSRERA---KILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKIN 154 DL + ++L NL A + Q K ++ Sbjct: 259 PDLWADPDKIDQVLSNLLENAVRHGEGTVTIDVTATASPRDGEHAEQGEKAATSVTVSDE 318 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G S + Y V + + + L Sbjct: 319 GPGIPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTIEVGRAPGAGAEFRFTLP 378 >gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11] gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11] Length = 827 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 66/249 (26%), Gaps = 37/249 (14%) Query: 1 MAKNICFNLSSMDLVA----------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50 M K + +L + + + H+I +P+ + ++LL ++DE M Sbjct: 147 MEKAEANRKRAEELREKAESATKAKDMFLAAMSHEIRTPMNGVVGMIDLLTHTDLDDEQM 206 Query: 51 QLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIE----DFIAVDKRVQV 102 Q+ SA + + G +D + I V+E + Sbjct: 207 QMAATVRDSAFALLTIINDILDFSKIEAGKMDLEMIPMSILDVVEGVGETMGPNACAKVL 266 Query: 103 SWTGEKIDLSR--------ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFS 150 + +IL NL A G + + + Sbjct: 267 DFIAYCDPRIPAEVAGDQVRLRQILFNLLGNAVKFTEAGQVTLRVDMNEISEGQATVRYQ 326 Query: 151 LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++ +G PE+ + + V L + E + Sbjct: 327 VQDHGIGM-TPEQTANLFQPFQQADVSTTRRFGGTGLGLTIVRRLVDMMGGTIDVESVPG 385 Query: 205 HNVVLSALL 213 + L Sbjct: 386 DGSTFTVTL 394 >gi|163802223|ref|ZP_02196118.1| nitrogen regulation protein [Vibrio sp. AND4] gi|159174028|gb|EDP58838.1| nitrogen regulation protein [Vibrio sp. AND4] Length = 348 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 68/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + LL + H+I +P+G + + +LL+++ + + + + A Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + L + Q++E ++ + ++ + Sbjct: 176 DRLRVLVDRLLGPQKPGKKTQENLHQVLEKVRQLVELESQHSVVIERDYDPSLPEILMDA 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I + + + + I Q + + NG Sbjct: 236 DQIEQAMLNIVSNAAHILSQQAHGQITIRTRTVHQANIHGQRCRLAARIEITDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L ++ ++ + H + L Sbjct: 295 PELRDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVDSWPGH-TTFTIYLP 347 >gi|153005298|ref|YP_001379623.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028871|gb|ABS26639.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 382 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 10/219 (4%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60 + + L I HD+ +P+G I SL +L E + + I A Sbjct: 164 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRTRTGEDERARKHLDRIGEQLGVA 223 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRER 115 + + + L + + + V ++ + Sbjct: 224 NGIITNLLDMIRDRPLAREPVELAAVVGGAAESVRRPTGVSLALEGLDALPPVEGDPGQL 283 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +NL A + G V + + ++ +G P ++ + + + Sbjct: 284 RQVFVNLLENAVFAASPEGVVAVRASRADGLVALDVEDSGPGV-DPATRRRLFEPLITTK 342 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 343 DKGIGLGLALVKRIAERHGGTVEYSDRPGGGARFTVRLP 381 >gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] Length = 1364 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKVKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVVTLEK 872 >gi|295091655|emb|CBK77762.1| Signal transduction histidine kinase [Clostridium cf. saccharolyticum K10] Length = 360 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 58/219 (26%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMSAIIRL----- 64 + + + H+I +PI AI N +LL++ + E + S+ + Sbjct: 131 MRTDFIANVSHEIKTPIAAIQNYAQLLEKPDLTKEEQENYTAAILSSTHRLSALITNILR 190 Query: 65 ------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + L + I + +D + + Sbjct: 191 LNKLESQQITPKYEAYDLCRQLCDCALGFETIWEEKEIDFEADLEDRAVIYADESLMELV 250 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST 175 NL A GG V + + + G F + G+ Sbjct: 251 WNNLLSNAFKFTEPGGSVLLRQTSDSDCVTVEVSDTGCGISKETKKHIFEKFYQGDTSHA 310 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + E + + + Sbjct: 311 TEGNGLGLALALRVLQMMGAAIEVESEEGKGTSFTVQIP 349 >gi|56752231|ref|YP_172932.1| two-component sensor histidine kinase [Synechococcus elongatus PCC 6301] gi|81300681|ref|YP_400889.1| histidine kinase [Synechococcus elongatus PCC 7942] gi|56687190|dbj|BAD80412.1| two-component sensor histidine kinase [Synechococcus elongatus PCC 6301] gi|81169562|gb|ABB57902.1| histidine kinase [Synechococcus elongatus PCC 7942] Length = 482 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 67/237 (28%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEVGI----EDEVMQ 51 +AK L+ + + + H++ +P+ I L+ LL +++ ++ Sbjct: 240 LAKAFNDMLNRLSISWEQQQQFVGNVSHELKTPLTVISGYLQSLLRRGDNLNSYQNQALE 299 Query: 52 LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + I L+ + + ++ ++ +Q Sbjct: 300 TASAEAERTIRMLQDLLDLARVDSGNLHFRLMPTVLNTLIAEVAEMTRRVTGRQIIMQTP 359 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159 + L+NL A + V I+++ S + + + G Sbjct: 360 KSEIVVYADQNRLEQALINLLDNAAKYSNQDQVVYINLEQSNQQTLIHIIDQGVGIPLAH 419 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + D + L + ++ + +L Sbjct: 420 QSRIFERFYRVDEAMTRSRDGTGLGLAIAKSLIEGMQGKITLRSKLGEGSTFTIILP 476 >gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 1096 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 63/237 (26%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRL 55 KN + + + H++ +P+ I LE L+ + + ++LI Sbjct: 426 EKNAKLE-EADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRLITF 484 Query: 56 SSMSAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S+ + + + VD+ L ++ Q+++ VD Sbjct: 485 SARRLSRLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTFQVDPAKFHVDLPG 544 Query: 108 KID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +IL NL A + + +++ +G + Sbjct: 545 DLPALTADPVRFEQILFNLLSNAVKYGGGSEVYITAEERPSGHVALAIRDHGPGI-AADS 603 Query: 164 FTQIVDG------NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + LA + +L Sbjct: 604 MERIFHPLEQLMPDGSGQATGTGLGLTIARHLADLMAGSIEVSSTPGEGSEFRVVLP 660 >gi|302038879|ref|YP_003799201.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606943|emb|CBK43276.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 786 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 64/240 (26%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 ++ M+ V L + HD + + I +L + ++ + Sbjct: 402 EDQLRQAQKMEAVGRLAGGVAHDFNNVMTVILGYSAVLLQELSQNSSARYFVQEIQRAGE 461 Query: 60 -----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + S+D + D+ +++ I + + + + + Sbjct: 462 RCAALTGQLLAFSRKQMLHPVSLDLHRVIRDLMALLKSLIGEHISIVLQLDPLPLWVKAD 521 Query: 115 RAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156 ++ L A ++P + ++ + G Sbjct: 522 AVQLEQVLLNLAVNARDAMPHGGTLTIDTRQVSREEVWGTDHDSRTARTYVRLRVHDTGT 581 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + H++ + E +S L Sbjct: 582 GIDPA-TKAKIFEPFFTTKPPGRGTGLGLSTVYGIVHQSGGTITVESAVGQGTTMSVFLP 640 >gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 978 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + S L + + + H+I +P+ AI LL + E + +I ++ Sbjct: 603 LIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATENETERKEFISIIETNN 662 Query: 58 MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + + + + + V Sbjct: 663 QLLLQLVSDILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRLQTGVALQFVPEVPVC 722 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++L+NL + A G++ + E F +K G E + Sbjct: 723 YVQTEHNRLSQVLINLLVNAAKFTE-KGEIMFGYKIRGEELYFYVKDTGIGISL-ENQKK 780 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 I + + I + + + K R+ E + + Sbjct: 781 IFERFTKVNTFIQGTGLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIP 831 >gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] Length = 807 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ + ++ + S I H+I +P+ +I LL + D+ + S Sbjct: 459 KDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNLSDDQRNHLITIDKSGK 518 Query: 62 IR----LKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ G VD D + ++ + Sbjct: 519 HLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDLDKSLP 578 Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 +I+LN A +G +E S++ NG + Sbjct: 579 PLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIGLSTDD 638 Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + D + + +AH + E L Sbjct: 639 QMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLTL 694 >gi|162449443|ref|YP_001611810.1| histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161160025|emb|CAN91330.1| histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 549 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 27/239 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDE 48 + + L + + +L L + + H+I +P+ + +++ + Sbjct: 283 RRQMETRLQLADRMASLGTLAAGVAHEINNPLAYMVANVDFARKELRAKGAGARLDALLS 342 Query: 49 VMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + F R G G VD + + ++ + I R+ + Sbjct: 343 ALDEAAEGGSRVRHIVGGLKTFSRADDGELGPVDVDPVIQLVLRMAQQQIQSKARLVLEL 402 Query: 105 TGEKIDLSRERA--KILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNL 157 + E +++LNL + A +LP + + G Sbjct: 403 RPVPAVRANEAQLGQVILNLLVNAAQALPEGKVSENEIRISTAPAPPGRVCIEVCDTGPG 462 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ ++I D + + + + + + E LL Sbjct: 463 I-APDLQSRIFDPFFTTKPIGEGTGLGLAICHGIVTSFRGEIGVESEVGKGACFRVLLP 520 >gi|160915023|ref|ZP_02077236.1| hypothetical protein EUBDOL_01030 [Eubacterium dolichum DSM 3991] gi|158432822|gb|EDP11111.1| hypothetical protein EUBDOL_01030 [Eubacterium dolichum DSM 3991] Length = 405 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 63/236 (26%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSM 58 + +++ L + + H++ +PI I +E+L+ +D M+ Sbjct: 171 LFQDVSKTLEGEKMQKRFIADASHELKTPIAVIKGMVEILNRDDFDDPQMEKEFLTQIES 230 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------------VQVSW 104 ++ + S + L + + I + + Sbjct: 231 EINRLDGLVKDLLILSRLSLSNVLLTKEFNDMNEIINKAIQSFKKQINEKGLKLVCDYQY 290 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +++++NL A +G + +++ + G E Sbjct: 291 QSPIRCDAMKMSQVIINLLSNAIKYSDQGTIRIQTYRENNFFVCT-VADEGQGI-AKENL 348 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + V + + + + + Sbjct: 349 DKIFHRFYRVDDARTRSKGGSGLGLSIVKSTVEAHGGNVEVDSELNKGTKFIVRIP 404 >gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 653 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53 + + S + + + H++ +P+ AI ++LD E + E + LI Sbjct: 377 LQTALDAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEYVGLI 436 Query: 54 RLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------- 102 R S L ++ G V GLG+ + D + + R + Sbjct: 437 RQSGQHLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRLDVRP 496 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 E R +ILLNL A G VT+ + FS+ G Sbjct: 497 GCRDEEITADRRACHQILLNLLSNALKFTEV-GVVTLESRRVGAMVEFSVSDTGIGIAES 555 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + V LA + + +++ L Sbjct: 556 DI-ERLGRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTVRLP 613 >gi|46447515|ref|YP_008880.1| putative two-component sensor histidine kinase phoR [Candidatus Protochlamydia amoebophila UWE25] gi|46401156|emb|CAF24605.1| putative two-component sensor histidine kinase phoR [Candidatus Protochlamydia amoebophila UWE25] Length = 589 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 59/222 (26%), Gaps = 19/222 (8%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKFM 67 ++ + H++ +PI I E L + + +Q + +K + Sbjct: 360 EMRRDFIANASHELKTPITIIRGFAEALYDNPGLPQDIQNEITTKIVRNCKRMTALIKDL 419 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--------- 118 S + L D+ + ++ + S + I Sbjct: 420 LTLADIENIPSSRLSLCDLFDLTTRCQSMLHEIFPDAEVNIETSSDDIKLIVDEDLFELA 479 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VE 173 ++NL A R + + + D + + + G ++ Sbjct: 480 IMNLIENAAKYSSRPAHIFVKLNDLSDHIVIEVSDQGIGIPLADQEHIFDRFYTVDKAHS 539 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ + + + L K Sbjct: 540 QKMGGSGLGLSIVKTIIEKHFGTITLKSELGKGSTFTITLPK 581 >gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] Length = 509 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 58/218 (26%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + I H+I +P+ AI ELL + + E + L+ + + ++ + Sbjct: 139 ANISHEIRTPLTAIVGFSELLKKTNLNFEQLGLLDVITNASEQLTATINDMLDIAKIELG 198 Query: 71 -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLF 123 + ++ + + + ++ V+ I ++L NL Sbjct: 199 ELKISNEEINLKEVILDIAKVYKEKAKSKGINFSVEYDEEILSNTIGDKLRIQQVLGNLL 258 Query: 124 MVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176 A G + +K F ++ G F N Sbjct: 259 ENAIKFTNVGNVSLVVKKSFQRANKIGVDFYVEDTGQGIPEDHLRSVFESFHQVNASEKQ 318 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + ++ E L Sbjct: 319 KGTGLGLAITKTLVEALEGKIQVESELGKGSQFRVYLP 356 >gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] Length = 959 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + S L + + H+I +P+ + + LL + G+ + + + + S Sbjct: 459 ARQLAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLQDEGLNKQQAYYVDVINRSGS 516 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSWT 105 L + D + D+EQ++ + + V+ Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRPVDFDLRAMVEDVEQLLHGRATEKHLQLSCLVESELG 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK 163 +++L NL A G +D + +F + +G E+ Sbjct: 577 RYWRGDMTRISQVLNNLVGNAIKFTDHGHVDIYVAEDPEQPGRVLFEVSDSGIGISPSEQ 636 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + L E + Sbjct: 637 QNLFDAFTQASGGLSSKGGTGLGLAISKKIVEAMGGELSLESSAGQGSRFWFSIP 691 >gi|317485574|ref|ZP_07944451.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316923254|gb|EFV44463.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 1176 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 36/248 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSSM 58 +AK ++ + + I H+I +P+ I EL L E ++ I SS Sbjct: 392 LAKEAADAATTAK--SQFLANISHEIRTPLHGIMAFAELALLKEKTPPHRYLRAILQSSR 449 Query: 59 SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + L D + + + ++ V + + Sbjct: 450 ALLEIINDLLDVSKIEAGHLELEQAPFMLDDVVHHVCTVALHNAHAGGIELVVDMDPNMQ 509 Query: 108 K--IDLSRERAKILLNLFMVAHASLPRGGKVT--------------ISVQDSKNENIFSL 151 I + +I++NL A GG++ + + + I + Sbjct: 510 IALIGDAGRLQQIIMNLVTNAVKFTGPGGQICVTLKQGHAEPLPSDTCPEQRRVQIICFV 569 Query: 152 KINGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + G + VD + + L + E + Sbjct: 570 RDTGVGIAPEFLGQLFQPFRQVDASTTRRHGGTGLGLCICRQLVEMMHGEIWVESEPNVG 629 Query: 207 VVLSALLE 214 + + Sbjct: 630 STFAFSIP 637 >gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 917 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + + ++ + + H+I +P+ I +L+ + +I Sbjct: 421 MLQAKKIAEEANKTKSIFLANMSHEIRTPLNGIIGMSDLMLRVKMTPEEQRETTKTIISC 480 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103 S + + + V+ + D++++I + I + K Sbjct: 481 SQNLLHLLNNILDFSKIEAEKVEISSNVFDLKEIIGESINMYKIRAKEKSLDISAGFQDG 540 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLAR 159 I + +IL NL A G + + + E F++ G Sbjct: 541 LENLWIGDKVKIQQILNNLINNAIKFTIEGRINVLVNKLNDDGSCCELQFTVSDTGIGIE 600 Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V DG+ + L R+ E + L+ Sbjct: 601 DKDLNKLFVAFSQVDGSYTRQFGGTGLGLSISKKLVELMGGRIWVESTMGVGSRFNFTLK 660 >gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2] gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2] Length = 854 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 57/245 (23%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 A+ L + + A + + H+I +P+ + ELL + + +E Sbjct: 318 AREQQTLLETARMAAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDTNLTEEQRLFA 377 Query: 54 RLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQV-IEDFIAVDKRVQ 101 S L + + D + ++ + A + Sbjct: 378 DTIRSSGEALLVIINDILDYSKIEAERLTLHPEPFDLERTIHEVTMLLQPRARAKGLDLM 437 Query: 102 VSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKI 153 + + ++L NL A G + V + +++ Sbjct: 438 IDFDMFLPTRYIGDAGRLRQVLTNLMGNAVKFTETGHVLVRVVGIEAEPGSQQLHITVED 497 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G + N + + L + + Sbjct: 498 TGIGIAPEHLDHIFGEFNQVESETNRKFEGTGLGLAITQRLVERMGGAVWVDSEPGKGSC 557 Query: 209 LSALL 213 L Sbjct: 558 FGFRL 562 >gi|219850947|ref|YP_002465379.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219545206|gb|ACL15656.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 917 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + L + + +L L I HD + + I LEL L + + Sbjct: 671 LRQMEEELLRNQKIESLGVLAGGIAHDFNNILTIIVGHLELAGMDLADDDPVTLQLNKAT 730 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109 + A + V ++ L D+ + F + + + Sbjct: 731 RALFRARGLTTQLLTFAQGGAPVRTVSYLSDMIEETATFALRGSKSRALFRLSASLPAVD 790 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----------DSKNENIFSLKINGNLA 158 + ++++ NL M A ++P GG V I+ + S S++ G Sbjct: 791 VDLDQISQVVSNLVMNADQAMPAGGTVIITGEVVTQAKGTLSLPSGEYVAISVEDTGIGI 850 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + + + + + + L Sbjct: 851 -PSDLMGKIFDPYYSTHSVGRGLGLSSSLSIIRNHGGGIEVHSVIGEGSTFTFYLP 905 >gi|196231613|ref|ZP_03130471.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224466|gb|EDY18978.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 605 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 73/239 (30%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59 ++ ++ + L S I HD+ + + I S +L + +++ +I S+ Sbjct: 218 ESQFLRAQRLEGIGTLASGIAHDLNNILSPILMSCGILRKEFDDEDTLKMLSIIEGSAER 277 Query: 60 AIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 +K + + + ++ +V+ + +Q ++ + + + Sbjct: 278 GAGIVKQVLTFARGVEGERVLLQLKHLVSELAKVMAQTFPRNIDIQTNFPPDLWTVMGDA 337 Query: 116 ---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157 ++LLNL + A ++P+ + G+ Sbjct: 338 TQLHQVLLNLCVNARDAMPQGGGIRLSAENVNIDQHFASMNPGAQLGPYVVLRASDTGSG 397 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ +I D + + VI + + L + S L Sbjct: 398 M-SPQTMEKIFDPFFTTKEVGKGTGLGLATVIGIVKSHGGFLTVQSELGVGTTFSVFLP 455 >gi|158337655|ref|YP_001518830.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158307896|gb|ABW29513.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 801 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 25/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + K N +L + + H+ +P+ I +S ELL+ + ++ + Sbjct: 564 LNKERELN----ELKSRFVAMTSHEFRTPLATILSSAELLEHYGHKWDDTRKLKHLNQIQ 619 Query: 58 MSAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S + + L + + Sbjct: 620 QSVEHMTGLLNDVLLLGKAESGNLAFKPIPMQLTEFCKGLAEELQITTKTHEIVCRLQDQ 679 Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + A P+GG V + N IF+++ +G E Sbjct: 680 PAETRMDEKLLRHIFTNLLSNAIKYSPQGGTVDFDLVFEDNYAIFNVQDHGLGIPQSE-C 738 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + I + V + + + + L Sbjct: 739 DRVFNSFNRASNVGNISGTGLGLAIVKRSVDLHGGEISLTSQEKVGTTFTVQLP 792 >gi|114778017|ref|ZP_01452917.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114551623|gb|EAU54176.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 903 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 70/243 (28%), Gaps = 32/243 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 +N ++ ++ + +L I HD + + AI + EL ++ +Q Sbjct: 518 ENKMTHVQRLESLGILAGGIAHDFNNILAAIMGNAELAQFNALDGLPVQQELKNIIGGSA 577 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 ++ L + V+ + Q+I+ I+ + +++ + + + Sbjct: 578 RAADLCKQMLAYSGQGMFVKSEVNITTLVEKELQLIDISISKNISLKLELSNVLPSVCAD 637 Query: 115 RAKILLNLFMVAHASLPRG-----------------------GKVTISVQDSKNENIFSL 151 + ++ + + + ++++ + + Sbjct: 638 KTQMQQIIMNLVTNAAESIGEEKQGDITIMTTVIEADSKALACPYIDAIREPGEYVLLEV 697 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG +I D + + V+ + + + + Sbjct: 698 TDNGCGM-DKATMGKIFDPFFTTKFTGRGLGMSAVLGIVRAHGGTIQIDSKPGSGTCFKI 756 Query: 212 LLE 214 LL Sbjct: 757 LLP 759 >gi|84496374|ref|ZP_00995228.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649] gi|84383142|gb|EAP99023.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649] Length = 678 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSS-MDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQ 51 + + L AL + H++ +P+ +I LE+L + + ++ Sbjct: 431 EERQAQQVEHVARLEALDRQKDEFVGTVSHELRTPLTSIAGYLEMLADGDLGELSPAQLK 490 Query: 52 LIRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQ-VIEDFIAVDKR 99 + + + + VD + D+ Q + + Sbjct: 491 AMAVIERNTFRLRGLIEDVLVLNRIETRGLDPSFVPVDLAQLVRDVVQDLQPQARDNEVT 550 Query: 100 VQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + VS + + + ++ L A GG V +SV + + +G Sbjct: 551 LDVSDLPQTCVVEGDALQLGRALTNVVGNAVKFSKSGGLVVVSVVVELDAVRIRCRDSGI 610 Query: 157 LARFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + S I + V + + L ++ +S Sbjct: 611 GIPAADMEQMFSRFFRASNATSGAIPGTGLGLAIVKAIIEAHHGELELHSVEGEGTTVSL 670 Query: 212 LLE 214 L Sbjct: 671 TLP 673 >gi|314933668|ref|ZP_07841033.1| sensor protein SrrB [Staphylococcus caprae C87] gi|313653818|gb|EFS17575.1| sensor protein SrrB [Staphylococcus caprae C87] Length = 588 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 52/217 (23%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + + + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLGVVLDESKRLNRLVNELLNVARMD 423 Query: 74 -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 +D + + ++L NL Sbjct: 424 AEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHLLWDYDMDRMDQVLTNL 483 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177 A G + ++ + NI + G + F + + Sbjct: 484 IDNASRYTQPGDTIAVTASKDEQYNILYISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQ 543 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ E+ ++ + L Sbjct: 544 GTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLP 580 >gi|301309055|ref|ZP_07215000.1| two-component sensor histidine kinase [Bacteroides sp. 20_3] gi|300833081|gb|EFK63706.1| two-component sensor histidine kinase [Bacteroides sp. 20_3] Length = 571 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 24/233 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE L Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103 S+ L+ +++ TG + + ++IE I + ++V Sbjct: 395 IKESSNRLLEITSELLKMTQVETGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + L + KI L A P G++ I + + ++ G Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + + L + Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567 >gi|284172996|ref|YP_003406377.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284017756|gb|ADB63704.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 361 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 + + + + A + S HD+ P+ + + L+LL+ E ++ Sbjct: 131 QRRLEESNERLQQFAYVAS---HDLREPLRMVTSYLQLLESRYSDELDEDAKEFIEFAVD 187 Query: 56 SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108 + ++ + SVD L D+ + + Sbjct: 188 GAERMEAMIEGLLTYSRVETQGKSFESVDLEAVLDDVLTDLSIRIDETGAEITAEPLPTV 247 Query: 109 IDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + + ++ NL A + +VTIS ++E + S+ G + F Sbjct: 248 SGDASQLRQLFQNLLENALQYSGEQEPRVTISATRDEDEWMISVSDEGIGIDQEDVDRVF 307 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + I + + + + + S L Sbjct: 308 EVFQRLHSHEEYKGTGIGLALCRRIVERHGGEIWVDSEPEEGSTFSFTL 356 >gi|229010689|ref|ZP_04167887.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048] gi|229132194|ref|ZP_04261051.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196] gi|229166233|ref|ZP_04293992.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621] gi|228617178|gb|EEK74244.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621] gi|228651242|gb|EEL07220.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196] gi|228750583|gb|EEM00411.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048] Length = 466 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 60/215 (27%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + + ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + E +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKLK 458 >gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus DSM 14838] gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus DSM 14838] Length = 709 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 61/227 (26%), Gaps = 17/227 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 +AK + L + + H+I +P+ AI LL D+ E + + + Sbjct: 338 LAKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAEADDDERESYMSLVEENNE 395 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + ++ G+V+ +I L ++ V + + + Sbjct: 396 LLLNLISDILDISKIEAGTVELIITRVDVARLCREVISTCSHKKHEEAVGLRFDESSPQI 455 Query: 112 SRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L N A +G + F + G ++ Sbjct: 456 MVDADKNRIMQVLSNFITNALKFTTKGSVTLSYRLEDDGLLHFCVTDTGKGIPAEQQHEI 515 Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L ++ + Sbjct: 516 FSRFVKLDSFSQGAGLGLSICQSLVERMGGQIGVNSREGEGSCFWFT 562 >gi|186683398|ref|YP_001866594.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186465850|gb|ACC81651.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 379 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 61/219 (27%), Gaps = 22/219 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------------RL 64 L S + H++ P+ AI LL + ++ + + Sbjct: 155 QLVSMVSHELRVPLNAISFCTNLLKRHSDDWSKKKIQEYVNRLQKGVEMLSLLIDEVLII 214 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF- 123 I + E + + +++ + LS +I+L + Sbjct: 215 GRAEAGKLKFDPKPLNIFQFCRNLLAELYPNESYQNSINFRCQDDCLSTNLDRIMLQIIL 274 Query: 124 ----MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST---- 175 A P GG V V + IF +K G ++ ++ + Sbjct: 275 TNLLENALKYSPSGGIVDFIVYHQDGKVIFRIKDRGIGILPGDR-ERLFEPFYRGKNVED 333 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + H + V L + ++ E + L Sbjct: 334 LPGHGLGLAIVKKLVDIHGGQITVESQIGVGTEFALALP 372 >gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] Length = 1054 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 57/236 (24%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 A++I + S + H++ +P+ ++ ++ L+ I ++ +L+ + Sbjct: 556 AQDITERKRLEQMKTEFISTVSHELRTPLTSVSGAIGLVLGGRLGDIPEKAQELLNTAQR 615 Query: 59 SAIIRLK---------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ L + + + Sbjct: 616 NSERLAHLINDLLDTDKIAAGKIHFDMQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKL 675 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L NL A P GG V+I + + S+ G + Sbjct: 676 TQTSVKVDVQRLKQVLANLLSNAIKFSPDGGTVSIEATSTDTDITVSVVDQGPGIPEDFQ 735 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E + L Sbjct: 736 HKVFQKFAQADSSDTRQKGGTGLGLAITRELVKRMGGTIGFETTEGKGTRFFFTLP 791 >gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1229 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 68/245 (27%), Gaps = 35/245 (14%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + + LS A + + H+I +P+ AI L+L+ + G+ Sbjct: 483 LEREREAWLSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQTGLNARQADY 542 Query: 53 IRLSSMSAIIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 +S +A L + + +G+ V + + V Sbjct: 543 ADKASSAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSANVGDKDVEV 602 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLK 152 + S +IL+NL A RG V ++ FS++ Sbjct: 603 LFDIDPELPDWISADSLRLQQILINLSGNAIKFTERGEVVIAARLARRDEAGLRIAFSVR 662 Query: 153 INGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G PE +I +G + L +L E + Sbjct: 663 DTGIGI-APEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTVESEEGKG 721 Query: 207 VVLSA 211 V Sbjct: 722 SVFRF 726 >gi|134298627|ref|YP_001112123.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134051327|gb|ABO49298.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 474 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-----MSAIIRLKFMRLAFG 72 + + H++ +P+ I +++L+ +G E ++ + + M + Sbjct: 252 FVADVSHELKTPLTTIRGNIDLIRRMGEEHPDIRQEAMEDIASEAERMSRLVLDMLVLAR 311 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------KILLN 121 + + + +VI+ K + + +++L Sbjct: 312 ADAGLTLPLEPVFLSKVIQQVGRQAKLLAKDIEFKITVEESCEQVQILADTDYVKQLVLI 371 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178 L A G V + V + +K NG E F + + + Sbjct: 372 LLDNAFKYTASPGVVELLVHCTHEHVKIHVKDNGVGIEQAELEHIFERFYRSDKSRPVGG 431 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A +++ + I Sbjct: 432 SGLGLSIAKWIAEQHQATITVNSILHKGSTFIITFP 467 >gi|332707718|ref|ZP_08427745.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332353421|gb|EGJ32934.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 930 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 K + L + S + H+ +P+ I +S ++L + + I+ Sbjct: 689 RKALAKEKELGQLRSGFVSLVSHEFRTPLTTIQSSAQMLQRYEQKLSAEKKLKHHDKIQH 748 Query: 56 SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + L ++ V + + ++ F + Sbjct: 749 AVLRMTQLLDDVLTIGKADAGKLKFEPEPMDLVALCQDILENIKINLGFNHNLIFLSHGS 808 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + R + ++ NL + A P GG + + + + + ++ G +++ Sbjct: 809 CQDVLIDERLLSHVVNNLLLNAIKYSPEGGTIKFELNCNSSTAVIQVQDQGIGIPKKDQY 868 Query: 165 ---TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + V ++ + + L Sbjct: 869 QLFESFERASNVGSIPGTGLGLAIVKKCLDLHEGTIAVNSEVGVGTTFTVTLP 921 >gi|294506751|ref|YP_003570809.1| Signal transduction histidine kinase [Salinibacter ruber M8] gi|294343079|emb|CBH23857.1| Signal transduction histidine kinase [Salinibacter ruber M8] Length = 768 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 55/235 (23%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 AK S M L + H+ +P+ +I E + D+ I S Sbjct: 512 AKQEAEEASQMKSA--LLANTSHEFRTPLTSIIGFAEEIATMAEDDDAPIGRFADHIENS 569 Query: 57 SMSA-IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + L+ G++ D+ V E+ V Sbjct: 570 GRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEADIALRTEANGT 629 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 L NL A GG V I V+ + ++ G Sbjct: 630 PVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIRVRTGDEAAVLEVEDTGVGMDPAQTE 689 Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + E + L Sbjct: 690 TLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGSRFTVRLP 744 >gi|291458569|ref|ZP_06597959.1| sensor histidine kinase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419102|gb|EFE92821.1| sensor histidine kinase [Oribacterium sp. oral taxon 078 str. F0262] Length = 347 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + + + +L S I HD+ +P+ I E + + + + ++ I Sbjct: 101 LKETQEEKIRNDTENKVLISNIAHDLKTPLTTIKGYSEGILDGIAKSPERQQKYIRTIYN 160 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------------AVDKRVQV 102 + + + + + + +V Sbjct: 161 KANDMDRLIDELNYYAKIETNKIPYHFRRISVREYFSDCADEIGLDMESKGYRFSYKNEV 220 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160 + + + K++ N+ + + + +V I V D+ + + NG + Sbjct: 221 EDSVLMLADPEQLRKVVNNIISNSVKYMDKANPEVRIFVGDAGDFVEVRIFDNGRGIQSS 280 Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + I + ++ R+ E + + L K Sbjct: 281 ALPYVFERFFREDSSRNSRKGGSGIGLSIARKIIEDSGGRIWAESAEGAGTTIHFTLRK 339 >gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 527 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 64/224 (28%), Gaps = 27/224 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + + H++ +P+ AI ++L D + + L S L + Sbjct: 249 FLAA-VSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVVNTMLD 307 Query: 73 YTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AK 117 + L + R+ T +++ ++ + Sbjct: 308 VSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAVQQ 367 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------ 171 IL+NL A +GG VT+ + ++ G +K ++ Sbjct: 368 ILINLVGNAVKFTDKGGLVTVDAEVDGAMLNLTVSDTGIGI-AEDKLEKLGQPFVQIQND 426 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V L + + + V+ + + Sbjct: 427 YTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVSIPR 470 >gi|163746360|ref|ZP_02153718.1| phosphate regulon sensor protein, putative [Oceanibulbus indolifex HEL-45] gi|161380245|gb|EDQ04656.1| phosphate regulon sensor protein, putative [Oceanibulbus indolifex HEL-45] Length = 350 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 14/240 (5%), Positives = 58/240 (24%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + + + H++ +P+ A+ +E L D+ + + ++ + Sbjct: 105 DVTEMAQAGQMRRDFVANVSHELRTPLTALIGFIETLQGPARDDTAARERFLGIMAQEAE 164 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKI 109 + + + + + E Sbjct: 165 RMNRLVGELLSLSRVEAEERVRPEAPLDVRDVLGGTLRNLGPLAADSNVTLVPQLGEEPA 224 Query: 110 DLSRERAKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLA- 158 + + +++ + ++ + S++ +G Sbjct: 225 HVLGDADQLMQVFTNLIENAIKYGGRDSSVEISTEIASYDPAMRGPAVHVSVRDHGPGID 284 Query: 159 --RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P + + + + V + + ++ RL +L Sbjct: 285 AIHLPRLTERFYRVDSHRSRALGGTGLGLAIVKHIMNRHRGRLKITSTSGQGAEFRVILP 344 >gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 918 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + + H++ +P+ AI +L + ++ + + + Sbjct: 549 ATLSHELRTPLTAILGWARMLRQGSLKPDTHVRALEAIERNGTLQAQLVEDLLDASRIIT 608 Query: 71 ---FGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123 VD + V A + V +S ++ +++ NL Sbjct: 609 GKLRLDVMLVDLPPIINAAIDAVRHGADAKGIELLVQLDPNAGPISGDQTRLQQVVWNLL 668 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE--STIDS 178 A PRGGKV+I + ++ + G F + + Sbjct: 669 SNAIKFTPRGGKVSIQLGRAEGLARIQVSDTGQGIVPEFLPYVFDRFRQADSTSTRPHSG 728 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + L + + E D + + Sbjct: 729 LGLGLAIARHLIELHGGTVKAESAGDGKGATFTVDIP 765 >gi|149200167|ref|ZP_01877190.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155] gi|149136704|gb|EDM25134.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155] Length = 385 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 78/231 (33%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52 + L+ +L + + H++ +P+ +++ L+LL DE E++ + Sbjct: 137 QSQSQNESEQLRLLTMLAAGVAHELGNPLNSLNIHLQLLNRLMKQIEGDEGDEARELLGV 196 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107 ++ A I L I + ++ + +++S Sbjct: 197 ASGEIERLDTIIRQFLGALRSDKPEMKAIELTSILREALQFMTKEIEDRNIELEISIPER 256 Query: 108 KIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++ N+ A ++P+GGK+ + + S G + Sbjct: 257 TPPIEGDETQLKQAFFNIMKNAIQAMPQGGKLALLCTGDDDFINISFADTGGGIDLNKIG 316 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V + E+ RL ++ +L+ L + Sbjct: 317 -KIFNSYKSDRHSGTGLGIFIVEKIIREHGGRLDISSAEEKGTILTISLPR 366 >gi|83815646|ref|YP_444896.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] gi|83757040|gb|ABC45153.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] Length = 757 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 55/235 (23%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 AK S M L + H+ +P+ +I E + D+ I S Sbjct: 501 AKQEAEEASQMKSA--LLANTSHEFRTPLTSIIGFAEEIATMAEDDDAPIGRFADHIENS 558 Query: 57 SMSA-IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106 + L+ G++ D+ V E+ V Sbjct: 559 GRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEADIALRTEANGT 618 Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 L NL A GG V I V+ + ++ G Sbjct: 619 PVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIRVRTGDEAAVLEVEDTGVGMDPAQTE 678 Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + E + L Sbjct: 679 TLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGSRFTVRLP 733 >gi|325662200|ref|ZP_08150815.1| hypothetical protein HMPREF0490_01553 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471452|gb|EGC74673.1| hypothetical protein HMPREF0490_01553 [Lachnospiraceae bacterium 4_1_37FAA] Length = 453 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59 M + + S + H++ +P+ + + L E + D + I L + Sbjct: 223 MLEQLEMVFQREK---RFTSDVSHELRTPVSVMLAQCDACLSEETLTDRQREQIELIAKK 279 Query: 60 AIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 A + + + + + +Q+I + + R ++ Sbjct: 280 AREMAGLISSLLLLSRADEGRQKLNKERVNLSELTQIIAEEQQMIAEEKEITVRTDITPD 339 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++++NL A GG V IS+Q + + ++ NG + Sbjct: 340 IYAQVDESFYIRMVVNLVSNAVFYGREGGIVKISLQVKEENVVGIVEDNGIGISVHDMEH 399 Query: 163 KFTQIVDGNVESTIDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + T SH + V +A + R+ E + + + Sbjct: 400 IWERFYRADTSRTDGSHSGLGLSMVKWIAEAHGGRVSVESREGEGSRFTFYIP 452 >gi|322514684|ref|ZP_08067712.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] gi|322119382|gb|EFX91491.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] Length = 616 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 ++L + I H++ +P+ I +L E + + + ++ ++SA+ Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTQQQREYLKTINISAVSLGHIFSDIIDLEK 175 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERAKIL 119 + + + ++ D + + S + +++L Sbjct: 176 IDSRRIELFNKEVEFSQLISDISNFANLMADQRKIKFHISYSDNLPNFILVDNARLSQVL 235 Query: 120 LNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES---- 174 NL A P GG + + + FSL+ G E+ Sbjct: 236 WNLVSNAVKFTPAGGDIYLDVQRVDDDHFSFSLRDTGIGIPKNEQRKVFAMFYQAENSQE 295 Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L E + + ++ Sbjct: 296 KKAQGSGIGLAISKRIAKLMGGDLTLESEEGKGSTFTLTIQ 336 >gi|226310461|ref|YP_002770355.1| sensory histidine kinase AtoS [Brevibacillus brevis NBRC 100599] gi|226093409|dbj|BAH41851.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 607 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 68/227 (29%), Gaps = 16/227 (7%) Query: 2 AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSM 58 + + L + + I H++ +P+ AI ++++E + + + Sbjct: 376 RRMESRLAQAERLAVIGEWATSIAHEVRNPLTAIKAFAQIIEEEWPKDHGSREYTGIIVE 435 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------VQVSWTGE 107 +F ++ + +++VI+ + + + V Sbjct: 436 EVERLNRFTDELLLFSRPNEESNVPVRVQEVIQHTLKLMEHAEGFNGVNVQLVYNEDIPA 495 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++ LN+ A + P G++ I +++ N+ + G I Sbjct: 496 VMSSPELLKQVFLNILHNALQAKPMEGRIQIDIKNINNDVHVQITNEGPPIAEENLLA-I 554 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + V + +L Sbjct: 555 FEPFFTTKQTGTGLGLAISQRIVQVYGGHIFAQNTP-EGVCFTVVLP 600 >gi|240146423|ref|ZP_04745024.1| sensor histidine kinase [Roseburia intestinalis L1-82] gi|257201429|gb|EEU99713.1| sensor histidine kinase [Roseburia intestinalis L1-82] Length = 347 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + E + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G + + ++ K+ +F L+ G F + + + + + Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|225377202|ref|ZP_03754423.1| hypothetical protein ROSEINA2194_02848 [Roseburia inulinivorans DSM 16841] gi|225210962|gb|EEG93316.1| hypothetical protein ROSEINA2194_02848 [Roseburia inulinivorans DSM 16841] Length = 304 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + E + + + + + Sbjct: 85 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 144 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 145 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 204 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G + + ++ K+ +F L+ G F + + + + + Sbjct: 205 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 264 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 265 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 297 >gi|212639756|ref|YP_002316276.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561236|gb|ACJ34291.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 448 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 15/216 (6%) Query: 13 DLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE----------VMQLIRLSSMSA 60 L + + + H+I +P+ + ++ L++ ++ + Sbjct: 229 KLATVSEMAASFAHEIRNPLTTVRGFVQFLNQDTTDENVKKYAPIMLEELDRTNEIITEY 288 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + K D L + + V ++ + + LL Sbjct: 289 LSLAKPAPFQLQKVNIDDVLHTSVHLLSPLGTMTNVSLQLYTEGKSDVYGDEHYLKQALL 348 Query: 121 NLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 N+ ++ G + +V + + E I ++ G E+ +I + Sbjct: 349 NVIKNGIEAIEYGGLVTIHKTVDEKEKEVIITIHDTGKGM-TEEQLKKIGLPYYTTKSKG 407 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L E + E + ++ L Sbjct: 408 TGLGSMITARLIREMGGTITYESRLNVGTTVTITLP 443 >gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1242 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K L + L + + + H+I +P+ + LL + ++ + ++ SA Sbjct: 568 LVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTSA 627 Query: 61 IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKR---------VQVSW 104 L + ++ + L + + I D +A V + Sbjct: 628 DHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNV 687 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLA 158 ++LLNL P R + ++ + ++ G Sbjct: 688 PRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRVSRPPNYDINAPLTLRYEVQDTGIGI 747 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E ++ + + L + E + D Sbjct: 748 -PAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFT 806 Query: 213 LE 214 L Sbjct: 807 LP 808 >gi|197302213|ref|ZP_03167272.1| hypothetical protein RUMLAC_00940 [Ruminococcus lactaris ATCC 29176] gi|197298644|gb|EDY33185.1| hypothetical protein RUMLAC_00940 [Ruminococcus lactaris ATCC 29176] Length = 347 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + E + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G + + ++ K+ +F L+ G F + + + + + Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|30261402|ref|NP_843779.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47526578|ref|YP_017927.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184232|ref|YP_027484.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49480021|ref|YP_035527.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165870335|ref|ZP_02214990.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167634324|ref|ZP_02392645.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167639386|ref|ZP_02397658.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170686693|ref|ZP_02877913.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170706391|ref|ZP_02896852.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|177651547|ref|ZP_02934336.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190568704|ref|ZP_03021608.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|196035324|ref|ZP_03102729.1| sensor histidine kinase [Bacillus cereus W] gi|196040758|ref|ZP_03108057.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|218902507|ref|YP_002450341.1| sensor histidine kinase [Bacillus cereus AH820] gi|227815859|ref|YP_002815868.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|228913969|ref|ZP_04077593.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926430|ref|ZP_04089502.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944998|ref|ZP_04107359.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120939|ref|ZP_04250181.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201] gi|229604389|ref|YP_002865818.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254682540|ref|ZP_05146401.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254726202|ref|ZP_05187984.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254733958|ref|ZP_05191672.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254740354|ref|ZP_05198045.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254753742|ref|ZP_05205777.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254758838|ref|ZP_05210865.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|30255256|gb|AAP25265.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47501726|gb|AAT30402.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178159|gb|AAT53535.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49331577|gb|AAT62223.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164713830|gb|EDR19352.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167512825|gb|EDR88199.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167530212|gb|EDR92938.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170128925|gb|EDS97791.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170669216|gb|EDT19959.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172082825|gb|EDT67888.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190560120|gb|EDV14101.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|195992001|gb|EDX55964.1| sensor histidine kinase [Bacillus cereus W] gi|196028548|gb|EDX67156.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|218537752|gb|ACK90150.1| sensor histidine kinase [Bacillus cereus AH820] gi|227003278|gb|ACP13021.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|228662599|gb|EEL18197.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201] gi|228814667|gb|EEM60927.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833254|gb|EEM78819.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845691|gb|EEM90718.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268797|gb|ACQ50434.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 466 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + S+K G + + Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKLK 458 >gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 577 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 56/219 (25%), Gaps = 24/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR----------- 68 + + H++ +P+ I ++L + E+ + + Sbjct: 355 AMLSHELRTPLNPIIGWTQMLRRGNLTPEMQAKALETIERNGKLQNQLIEDLLDISRIIR 414 Query: 69 -LAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERAKILLN 121 ++ L + + + + + + +++ N Sbjct: 415 GKFSIAPIPIELPPVLHSAIEAVRNLAEQKEVLLDCRCEPSALNRQVSADPTRLQQVIWN 474 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 L A P+GG+V + + +++ NG Sbjct: 475 LLTNAIKFTPKGGRVEVDLAGDSANLYVAVRDNGMGIAPEFLPYMFERFRQADSRSTRKE 534 Query: 177 DSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + V + + + E + V + L Sbjct: 535 GGLGLGLFIVRHIVELHGGMVQAESEGEGKGAVFTVELP 573 >gi|15642707|ref|NP_232340.1| osmolarity sensor protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586634|ref|ZP_01676419.1| osmolarity sensor protein EnvZ [Vibrio cholerae 2740-80] gi|153817434|ref|ZP_01970101.1| osmolarity sensor protein EnvZ [Vibrio cholerae NCTC 8457] gi|153821278|ref|ZP_01973945.1| osmolarity sensor protein EnvZ [Vibrio cholerae B33] gi|229507239|ref|ZP_04396744.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae BX 330286] gi|229509840|ref|ZP_04399321.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae B33] gi|229606745|ref|YP_002877393.1| osmolarity sensor protein [Vibrio cholerae MJ-1236] gi|254851250|ref|ZP_05240600.1| osmolarity sensor protein EnvZ [Vibrio cholerae MO10] gi|255744329|ref|ZP_05418281.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholera CIRS 101] gi|262158561|ref|ZP_06029676.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae INDRE 91/1] gi|297581548|ref|ZP_06943471.1| osmolarity sensor protein EnvZ [Vibrio cholerae RC385] gi|298500472|ref|ZP_07010276.1| osmolarity sensor protein EnvZ [Vibrio cholerae MAK 757] gi|9657310|gb|AAF95853.1| osmolarity sensor protein EnvZ [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549193|gb|EAX59226.1| osmolarity sensor protein EnvZ [Vibrio cholerae 2740-80] gi|126512020|gb|EAZ74614.1| osmolarity sensor protein EnvZ [Vibrio cholerae NCTC 8457] gi|126521210|gb|EAZ78433.1| osmolarity sensor protein EnvZ [Vibrio cholerae B33] gi|229353314|gb|EEO18253.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae B33] gi|229354744|gb|EEO19665.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae BX 330286] gi|229369400|gb|ACQ59823.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae MJ-1236] gi|254846955|gb|EET25369.1| osmolarity sensor protein EnvZ [Vibrio cholerae MO10] gi|255737854|gb|EET93247.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholera CIRS 101] gi|262029722|gb|EEY48371.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae INDRE 91/1] gi|297534386|gb|EFH73224.1| osmolarity sensor protein EnvZ [Vibrio cholerae RC385] gi|297540641|gb|EFH76698.1| osmolarity sensor protein EnvZ [Vibrio cholerae MAK 757] Length = 438 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPALGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|313638847|gb|EFS03910.1| heme sensor protein HssS [Listeria seeligeri FSL S4-171] Length = 459 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 62/228 (27%), Gaps = 20/228 (8%) Query: 8 NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAII 62 L + + + H++ SP+ ++ LL E + ++ + Sbjct: 231 ELEKSEAARQEFVANVSHELQSPLTSMQGFATLLASDTLTEKERAEYLAVLSEETTRLSS 290 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWTGEKIDLSRER 115 K + + +V + K + ++ ++++ + + Sbjct: 291 LTKQLLTLASLDQEAELRKKDQVQLEVQWRQLLQTTEWSWRAKEITINLELDEVNCTGDA 350 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171 ++ NL A P G + I + + ++ +G + Sbjct: 351 ELLYQVWSNLLTNAIKFTPTSGAINIRLYQDASHAFVEVEDSGIGISEADIDKIFQRFYK 410 Query: 172 ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + + H + + E + + L K Sbjct: 411 ANQSRTREEGSSGLGLSICKKIIHLHHGEIFVESKSEKGTKFTIKLPK 458 >gi|299768352|ref|YP_003730378.1| phosphate regulon sensor kinase PhoR [Acinetobacter sp. DR1] gi|298698440|gb|ADI89005.1| phosphate regulon sensor kinase PhoR [Acinetobacter sp. DR1] Length = 452 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78 I H++ +P+ + +E D+ I + + + + Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMSQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAFFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ +A+ K Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445 >gi|291482777|dbj|BAI83852.1| hypothetical protein BSNT_00667 [Bacillus subtilis subsp. natto BEST195] Length = 472 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MAK + + + + H++ +P+ I+ +E L+ +D+ L Sbjct: 229 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288 Query: 53 IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + + +K ++ + + Q + +Q Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 348 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V +IL+N+ + G ++ K ++ G Sbjct: 349 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 407 Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + V L ++ + + + L Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 466 >gi|260774776|ref|ZP_05883679.1| nitrogen regulation protein NR(II) [Vibrio coralliilyticus ATCC BAA-450] gi|260609338|gb|EEX35490.1| nitrogen regulation protein NR(II) [Vibrio coralliilyticus ATCC BAA-450] Length = 348 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+ + + + + ++ A Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 175 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + + L + Q++E +A ++ + + + Sbjct: 176 DRLRSLVDRLLGPQKPGKKQQENLHLILEKVRQLVELEVAQSVTIERDYDPSLPEFLMDS 235 Query: 116 AKILLNLFM---------------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I L + I Q K + NG Sbjct: 236 DQIEQALLNIVSNAGQILQKQNNGNIIIRTRTVHQTNIHGQRCKLAARVEIIDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + V + L +++ ++ E + + L Sbjct: 295 AELQDTLFYPMVSGREGGTGLGLSIAQNLIDQHQGKIDVESWPGR-TIFTIYLP 347 >gi|228995639|ref|ZP_04155303.1| hypothetical protein bmyco0003_2400 [Bacillus mycoides Rock3-17] gi|229003268|ref|ZP_04161099.1| hypothetical protein bmyco0002_2480 [Bacillus mycoides Rock1-4] gi|228757986|gb|EEM07200.1| hypothetical protein bmyco0002_2480 [Bacillus mycoides Rock1-4] gi|228764113|gb|EEM12996.1| hypothetical protein bmyco0003_2400 [Bacillus mycoides Rock3-17] Length = 336 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 66/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + K + S + L S I HDI +P+ +I ++ L + + E +++I Sbjct: 89 LEKVQIEAVKSHESRKQLLSSISHDIRTPLTSIIGYVDALKDDIATSEEEKREYLEIISK 148 Query: 56 SSMSAIIR------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVS 103 S + + + E +IE + K Sbjct: 149 KSGNLKQLVDEIFNMAKLDADEFPLKEEPLNFAEIARESLIEFLPELTKHDLELQVSIPE 208 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 +++ NL A G + I + ++ NE + G + Sbjct: 209 TPCPVTADYLSLIRVIGNLMKNAIYYGKSGKIIGIKLLETTNEYQLLIWDKGPGISKHDL 268 Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N ++ E I + K Sbjct: 269 NNVFERMYRSEQSRNHSHGGSGLGLAIAKALVEKNGGKIWVESIPWERTTFGFSIPK 325 >gi|251795024|ref|YP_003009755.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247542650|gb|ACS99668.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 626 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 72/221 (32%), Gaps = 11/221 (4%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 N MD+++ L + + H++ +P+ L+LL+E ++ + L+ Sbjct: 405 NELQRSEKMDMISQLAASVAHEVRNPLQVTRGFLQLLEEKSGSNKEKNYMLLAINELDRA 464 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEKIDLSR 113 + + + + + +I + R+ + + S Sbjct: 465 SEIITDFLTFAKPQLEHVSVLNIANEFKHIGTILIPLANMQGGQIRLNIPDHLQINGNSS 524 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + + +N+ + +L G++ IS N + +K NG E ++ + Sbjct: 525 KFKQAFINMIKNSIEALKNEGRIDISGYMEGNRVVICIKDNGEGMTEAELV-KLGEPYYS 583 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + I ++ Sbjct: 584 NKSKGTGLGLMVTFSIIEVMQGDIVFKSIKGIGTEVTVTFP 624 >gi|167758625|ref|ZP_02430752.1| hypothetical protein CLOSCI_00965 [Clostridium scindens ATCC 35704] gi|167663821|gb|EDS07951.1| hypothetical protein CLOSCI_00965 [Clostridium scindens ATCC 35704] Length = 497 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 24/222 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 L S I HD+ +P+ AI E + + E M+ + + + + Sbjct: 269 LISNISHDLKTPVTAIKGYAEGIMDGVADTPEKMERYIRTIYNKANEMDTLINELTLYTK 328 Query: 77 VDSLIGLGDIEQVIEDFIAVDK-----------------RVQVSWTGEKIDLSRERAKIL 119 +D+ + + + D V + + I + + +++ Sbjct: 329 IDTNRIPYNFNTLSVNAYFDDCVEDLSIELESKNVEFGYFNYVEGSVKVIADAEQIKRVI 388 Query: 120 LNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 N+ + + + V+D + L+ NG + F + + Sbjct: 389 HNIVNNSLKYMDKPKGKINLRVKDVGDFIQVELEDNGKGIAAKDLPNIFDRFYRTDASRN 448 Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + E+ ++ ++ + +L K Sbjct: 449 SSKGGSGIGLSIVKKIIEEHGGKIWATSREETGTTMYFVLRK 490 >gi|158333594|ref|YP_001514766.1| sensory transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158303835|gb|ABW25452.1| sensory transduction histidine kinase [Acaryochloris marina MBIC11017] Length = 726 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 75/232 (32%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMD----LV--ALLCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVMQ 51 +A++I + L L + I H++ +P+ + L + +D +Q Sbjct: 490 LARDITERRQAEKDRERLAEIGELAAMIVHEVRNPLTTVLMGLNSFQRMDLPDRAKLRLQ 549 Query: 52 LIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVS 103 L S L + + T +V+ D+ +++ + R + Sbjct: 550 LALEESERLQRLLNEILLYAKQQKLDTTAVELNQLFADMLPTLQEMPSAADRPIQLMPAD 609 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK-INGNLARFPE 162 + + ++ +NL A ++P G + +Q ++ ++ NG + Sbjct: 610 ESAWVDADIDKLKQVFINLVSNACEAVPEGEPIIWQLQIVALQDQVKIEVNNGGDPIPAD 669 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + + + + L+ + ++ L Sbjct: 670 VLPQLTKPFFTTKSSGNGLGLAITKRIVETHGGELVIQSSAASGTTVTVSLP 721 >gi|144901017|emb|CAM77881.1| sensor protein [Magnetospirillum gryphiswaldense MSR-1] Length = 906 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 K L+ +D + S + H++ +P+ +I + E+L + E + +I Sbjct: 662 KAANERLTELDRMKDDFISTVTHELRTPLTSIRSFSEILFDNPGIDEAQRLEFLAIIIKE 721 Query: 57 SMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S + + + ED + Sbjct: 722 SERLTRLINQVLDMAKMESGRMTWHFVMVEPRQLIQDSIAATGALFEDRRVTLETRLADD 781 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++++NL A + G+V +++ + N + NG Sbjct: 782 LPPLRTDADKFMQVVINLLSNAVKFVEAGQGRVRLTLAATANGIRVEVADNGPGLPANAL 841 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ + I+ + L Sbjct: 842 EAVFDKFHQVGDTLTNKPKGTGLGLAISRTIVEHLGGRIWVDSIEGQGATFTFDLP 897 >gi|110833203|ref|YP_692062.1| sensory box histidine kinase [Alcanivorax borkumensis SK2] gi|110646314|emb|CAL15790.1| sensory box histidine kinase [Alcanivorax borkumensis SK2] Length = 982 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 63/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + L ++ L + I H+I +P+ AI + LD +E ++ + Sbjct: 743 LRQMEAHLTHNERLASIGRLAAGIAHEIGNPVTAIACLAQNLDSETDAEEQLESSQQILE 802 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 + + ++ S + + + + + Sbjct: 803 QTRRITRIVESLVTFSHSGGIRHSQHVPVNIRDTVDEAVSLLLLDPDHRQQPFDNRSKPE 862 Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ +NL A + V I + ++ G+ E Sbjct: 863 HWVQGDPQRLLQVFINLLGNAADASIDKQPVVILSNATDQAVNVIVEDQGHGI-PEELRD 921 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLE 214 + + V S + V + E+ + E + L Sbjct: 922 ALFEPFVTSKPPGRGTGLGLALVYSIIKEHLGSIQVESPVAEQGGTRFIIQLP 974 >gi|46202705|ref|ZP_00052736.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 686 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 67/231 (29%), Gaps = 23/231 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------- 56 + + ++ A + S HD+ P+ I++ L LL + + + Sbjct: 459 ELKESNQELEQFAYVAS---HDLRQPLRMINSYLGLLRKKLVSSFDAEAEEYFAFASDGA 515 Query: 57 ---SMSAIIRLKFMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID 110 L+F R+ VD L D Q + I+ Sbjct: 516 RRLDQMISDLLEFSRIGKQSAWESVDLNGVLADGLQNLHVAISDSGACVTMPEGLPVIPG 575 Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ NL A P K I+ D + I S+K NG ++ Sbjct: 576 DRSELTRLFQNLIGNALKYCPPERKPAVEIACGDGGRDWILSVKDNGIGIEADCL-ERVF 634 Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + I +A + R+ E + D L K Sbjct: 635 GIFQRLVSRTQYEGTGIGLAVCRKIAEHHGGRIWVESVLDQGSTFFVTLPK 685 >gi|327482123|gb|AEA85433.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 743 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 74/240 (30%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRLS 56 ++ L L AL L + I H+ + + ++ E+L ++ + S Sbjct: 358 ERSHQALLQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRS 417 Query: 57 SMSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + A + + VD + + + +++ + + + Sbjct: 418 ARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTV 477 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQD------------SKNENIFSLKINGNL 157 + + L + A ++P GG + I++ + ++ +G Sbjct: 478 LDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGLAAGPYLCVDVEDSGCG 537 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE + + + + + V A ++ + + +S LL + Sbjct: 538 M-SPEVQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQSELGKGTRVSLLLPR 596 >gi|327403490|ref|YP_004344328.1| integral membrane sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] gi|327318998|gb|AEA43490.1| integral membrane sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] Length = 1205 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 +A S A + ++ H+I +P+ + S++ L + + + ++ Sbjct: 970 LADAAARLAQSERESAWREMAKQVAHEIKNPLTPMKLSVQHLQRVFDPNDPKAAERIERV 1029 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVS 103 + ++ DI +++ I V ++ + Sbjct: 1030 TNSLIEQIDALTSIANEFSNFAKLPQPIMTEVDILELLNAVAALFDGDGKIHVQVQLNTT 1089 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP 161 ++L NL + + I S+ +++ ++ NG Sbjct: 1090 EQLIIPADKEMILRVLNNLVSNGIQAASITSESHIGLSIDANEDFVFIRVRDNGTGIAED 1149 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + T I + + + V + + + E + L + Sbjct: 1150 QIQT-IFEPYFTTKSTGTGLGLAMVKQIVETHHGSIEIENTSPEGTTVLVTLPR 1202 >gi|227889701|ref|ZP_04007506.1| phosphate regulon sensor histidine kinase [Lactobacillus johnsonii ATCC 33200] gi|227849746|gb|EEJ59832.1| phosphate regulon sensor histidine kinase [Lactobacillus johnsonii ATCC 33200] Length = 552 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 63/216 (29%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ + + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ +++ I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRSQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 1042 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 61/234 (26%), Gaps = 24/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSS 57 AK S + + + H++ +P+ ++ +LL + + + +I+ S Sbjct: 582 AKEAAEKASRAK--SEFLASMSHELRTPLNSVLGYAQLLRCEEELSQRQRKALNVIQQSG 639 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104 ++ + +VD L I ++ Sbjct: 640 EHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADV 699 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R ++L+NL A G V ++ + F ++ G R Sbjct: 700 PAVVSADERRLCQVLMNLLDNAIKYTRHGEVVLRTMMH-ERAVCFVVEDTGLGIRPEHLS 758 Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + L H L LE Sbjct: 759 EIFDVFHQVRDPSMTVEGTGLGLAISKRLVHLMGGELQVASKPHEGSRFWFELE 812 >gi|146283794|ref|YP_001173947.1| hypothetical protein PST_3477 [Pseudomonas stutzeri A1501] gi|145571999|gb|ABP81105.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 762 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 74/240 (30%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRLS 56 ++ L L AL L + I H+ + + ++ E+L ++ + S Sbjct: 377 ERSHQALLQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRS 436 Query: 57 SMSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + A + + VD + + + +++ + + + Sbjct: 437 ARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTV 496 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQD------------SKNENIFSLKINGNL 157 + + L + A ++P GG + I++ + ++ +G Sbjct: 497 LDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGLAAGPYLCVDVEDSGCG 556 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE + + + + + V A ++ + + +S LL + Sbjct: 557 M-SPEVQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQSELGKGTRVSLLLPR 615 >gi|153007235|ref|YP_001381560.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp. Fw109-5] gi|152030808|gb|ABS28576.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. Fw109-5] Length = 351 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L + + H+I +P+ + S ELL E +I + ++ + Sbjct: 130 LAAGLAHEIRNPLAGLQGSAELLAREAEGPAREYAAVIAREAKRVDGLVRELLDLARPAA 189 Query: 76 SV----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAH 127 D +GD+ ++ ++ V + + ++LLNL A Sbjct: 190 LQTAAIDLHEIVGDVLVLVRGIPGAERVTFVERYDPSLPKLHLDAEKLTQVLLNLVRNAL 249 Query: 128 ASLPRGGKVTIS-------------VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++ I+ ++ S++ NG+ P ++ S Sbjct: 250 DAVAGRQGAQIALETGVSSLRLRSASGRTRPLVRLSVQDNGSGIAEPMLH-RLFTPFATS 308 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + + L Sbjct: 309 KAHGTGLGLAVSRRIVEAHGGRIEVKNRAGGGAEANVYLP 348 >gi|300854763|ref|YP_003779747.1| putative two component sensor histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300434878|gb|ADK14645.1| predicted two component sensor histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 467 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 68/237 (28%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49 +A + + A S H++ +P+ I LLD G +D Sbjct: 228 LASTFNKMIDRLQEAFNKQAQFVSDASHELRTPVAVIQGYANLLDRWGKDDRDALEKSIY 287 Query: 50 ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---- 102 ++ ++++ + + I++V+++ +++ + Sbjct: 288 GIKLEAANMANLIEKLLFLARGDSGTQLIEKKKFWLNELIDEVVKESRIIEQNHVISSSR 347 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + T + ++L + P GK+ I+ + S+ G E Sbjct: 348 NDTVRVCADYKMIKQMLRVFIDNSMKFTPEHGKIDINSEVQGKVVKISVSDTGIGIPKEE 407 Query: 163 KFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + ++ L+ Sbjct: 408 IQNIFNRFYIVDKSRSKEKGGTGLGLSIAKWIIDMHQGAIDVESQEGKGTKITVTLK 464 >gi|227878533|ref|ZP_03996467.1| phosphate regulon sensor histidine kinase [Lactobacillus crispatus JV-V01] gi|227861867|gb|EEJ69452.1| phosphate regulon sensor histidine kinase [Lactobacillus crispatus JV-V01] Length = 552 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ + + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSYSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|223940722|ref|ZP_03632560.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223890613|gb|EEF57136.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1463 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----- 57 +N M+ + L I HD+ + + I S ELL+ + E+ ++I Sbjct: 1084 ENQFLRAQRMESIGTLAGGIAHDLNNVLAPILMSCELLEHELRDAEIREVISSIKTGAQR 1143 Query: 58 --MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 L F R G ++ + +IEQ++ + +V VS E + + Sbjct: 1144 GADLVRQVLSFARGVEGRRLALQPRHLIREIEQIMGETFPKSIQVDVSPDPELWMVVGDP 1203 Query: 116 ---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNL 157 ++LLNL + A ++P + + + + G Sbjct: 1204 TQLHQVLLNLCVNARDAMPAGGQLTLSAGNVLREENQLMAGLNSQATAYVVIRVADTGTG 1263 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + + + L Sbjct: 1264 I-PPELREKIFDPFFTTKEVGKGTGLGLSTTLAIIKSHDGFIHVSSEPGRGSTFEIYLP 1321 >gi|167634148|ref|ZP_02392470.1| putative sensor histidine kinase [Bacillus anthracis str. A0442] gi|167640071|ref|ZP_02398338.1| putative sensor histidine kinase [Bacillus anthracis str. A0193] gi|170689712|ref|ZP_02880887.1| putative sensor histidine kinase [Bacillus anthracis str. A0465] gi|170709460|ref|ZP_02899864.1| putative sensor histidine kinase [Bacillus anthracis str. A0389] gi|190567406|ref|ZP_03020320.1| putative sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|229600008|ref|YP_002864904.1| putative sensor histidine kinase [Bacillus anthracis str. A0248] gi|254686670|ref|ZP_05150528.1| sensor histidine kinase, putative [Bacillus anthracis str. CNEVA-9066] gi|254724746|ref|ZP_05186529.1| sensor histidine kinase, putative [Bacillus anthracis str. A1055] gi|254736995|ref|ZP_05194700.1| sensor histidine kinase, putative [Bacillus anthracis str. Western North America USA6153] gi|254744176|ref|ZP_05201858.1| sensor histidine kinase, putative [Bacillus anthracis str. Kruger B] gi|254761866|ref|ZP_05213715.1| sensor histidine kinase, putative [Bacillus anthracis str. Australia 94] gi|167511882|gb|EDR87261.1| putative sensor histidine kinase [Bacillus anthracis str. A0193] gi|167530462|gb|EDR93177.1| putative sensor histidine kinase [Bacillus anthracis str. A0442] gi|170125627|gb|EDS94550.1| putative sensor histidine kinase [Bacillus anthracis str. A0389] gi|170666326|gb|EDT17114.1| putative sensor histidine kinase [Bacillus anthracis str. A0465] gi|190561533|gb|EDV15504.1| putative sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|229264416|gb|ACQ46053.1| putative sensor histidine kinase [Bacillus anthracis str. A0248] Length = 337 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 95 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L D I + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E I + K Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 331 >gi|154504470|ref|ZP_02041208.1| hypothetical protein RUMGNA_01974 [Ruminococcus gnavus ATCC 29149] gi|153795245|gb|EDN77665.1| hypothetical protein RUMGNA_01974 [Ruminococcus gnavus ATCC 29149] Length = 528 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----------------I 45 + + L A L I HD+ +P+ +I S +L Sbjct: 287 REEALAQAKNEQLRANLLRSISHDLRTPLTSISGSAGILLNSASALGEEKQKQLYKGIYD 346 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +S VD +I + K + Sbjct: 347 DSMWLINLVENLLSVTRLEDGTMNLNLQIELVDEVIEGALKHISRDHSDYELKFIHSEEL 406 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 SR ++++N+ A P+G K+ I + S+ NG Sbjct: 407 LLAKMDSRLIIQVIINIVDNALKYTPKGSKIEIYARKENQMIAISIADNGKGI-ADCAKE 465 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + H + + L+ Sbjct: 466 KIFDMFYTADSKVADSRRGLGLGLFLCKSIIQAHGGTIQVADNVPHGTIFTFTLQ 520 >gi|167646307|ref|YP_001683970.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167348737|gb|ABZ71472.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 509 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45 + + + L A+ + S + H+I P+ A+ N LE + + Sbjct: 267 LKELQAELVHVSRLSAMGTMASTLAHEINQPLTAVANYLETIRDLLIGDAEIDRSLLREA 326 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101 E + F+ D + + + + Sbjct: 327 VGEAASETLRAGFIVRRLRDFVARGDVDKSIEDLPRLIEEAGNLALVGARERGVRSFFRF 386 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLA 158 + + ++L+NL A ++ ++V S++ G Sbjct: 387 DLEATPALVDRVQIQQVLVNLMRNAVEAMAESEVRELTVSTLLRPDGAIEVSVEDTGPGI 446 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E ++ V S + + + + R+L + + L Sbjct: 447 -SDEIAPRLFQAFVSSKAEGMGLGLSICRTIIEAHGGRILADALPGGGTAFRFTL 500 >gi|313200853|ref|YP_004039511.1| osmosensitive k channel his kinase sensor [Methylovorus sp. MP688] gi|312440169|gb|ADQ84275.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. MP688] Length = 906 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLS 56 A++ ++ S L L S I HD+ +P+ ++ + L + + + Sbjct: 662 ARDALISMESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAPDMPSDRHAQLETMYDQA 721 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEKID 110 + + + +A GSV +E+V ++ R++V+ E Sbjct: 722 FRMQQLVVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPL 781 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKF 164 L + ++ NL A P + IS Q E ++ G + F Sbjct: 782 LQFDAVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIF 841 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G VES + + + L E H L Sbjct: 842 QKFTRGKVESPQPGVGLGLSICKAIIQAHGGALWAEAQQPHGTRFIFSLP 891 >gi|298241825|ref|ZP_06965632.1| signal transduction histidine kinase with CheB and CheR activity [Ktedonobacter racemifer DSM 44963] gi|297554879|gb|EFH88743.1| signal transduction histidine kinase with CheB and CheR activity [Ktedonobacter racemifer DSM 44963] Length = 1103 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/214 (10%), Positives = 60/214 (28%), Gaps = 21/214 (9%) Query: 21 RICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFM------- 67 + H++ +P+ + ++LL ++ + S + + Sbjct: 888 MVSHELKTPLTSAKGFVQLLQRRLSKAGDEHMAPELEQVDRSLEKLSRLISSLLDANALE 947 Query: 68 -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + + + ++ + + ++ + ++L NL A Sbjct: 948 TGMLSIHASVFAVDDLVREMVKEQKQLWPHRLFLESTIQIRAYADRERSGQVLQNLLSNA 1007 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID------SHD 180 P V +SV + S++ G ++ +I + V Sbjct: 1008 LKYSPVADPVWVSVSVDDDMIRLSVQNRGKGI-PQDQHARIFERFVRGAQPEQNTVKGMG 1066 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + R+ E + V L Sbjct: 1067 LGLYIAAQIVTQQGGRIWVESTLNEGVTFFFTLP 1100 >gi|162448993|ref|YP_001611360.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159575|emb|CAN90880.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 636 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 67/240 (27%), Gaps = 28/240 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----------GIED 47 A+ + L S L A+ L + + H+I +P+ + +LELL Sbjct: 245 AEELRSRLERSERLAAVGQLAAGVAHEINNPLAYVVANLELLAREVRRLADKGVATEHLA 304 Query: 48 EVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + R + + + + + G D + ++ + RV Sbjct: 305 QPLADARHGAARVVDIVGDLGVFARAEANEAIGPTDVNAVIESALNIVHPQMKHRARVVR 364 Query: 103 SWTGEKIDL--SRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGN 156 ++ +NL + A S+ G +D E + + +G Sbjct: 365 ELASVAPVSGAEGRLTQVFVNLLINAAQSIREGRVADNVVEVRTRDQGREVVAEIVDSGC 424 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + + + + L Sbjct: 425 GV-PEEHMHRLFEPFFTTKRAGEGTGLGLAICRNIVESCGGTIGVSSEAGVGTCVRVRLP 483 >gi|327441258|dbj|BAK17623.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 525 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 68/224 (30%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLI 53 +N+ + LV L + + H+I +P+ I +++++E + I Sbjct: 299 ENLILQSEKLKLVGELAAGVAHEIRNPMTVISGYVQMMNEDPNSPYYEYTKLIQNETERI 358 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLS 112 L ++ K + ++L + Q A+ + + + Sbjct: 359 ELILSEFLVLSKPQANQYAPINLAEALSEVVQFLQYEFQSKAISLNIINEFLNITILGNK 418 Query: 113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ +NLF A ++ + + E + G P +I + Sbjct: 419 NQLKQVFINLFKNAIEAINEDGSITLQVCKSKDGKEIYIQMIDTGCGI-PPHVLERIFEP 477 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +++ + + + Sbjct: 478 FYTTKTKGTGLGMMIINKIVQDHQGSIQIKSKQHVGTEILLTFP 521 >gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 1186 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 58/241 (24%), Gaps = 30/241 (12%) Query: 1 MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 M K + + L + + + H+I +P+ I ELL + ED + I+ Sbjct: 797 MDKANKMAVKAEKANELKSQFLANMSHEIRTPLNIIMGYTELLAKDLEEDNYKRYIKSIR 856 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------- 103 + L + + +I + + + + Sbjct: 857 SAGDSLLDQVNDILDMSKIEAGIIEINYEYIDLAALLENITAIFADKVKAKGLDFQLKMD 916 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-------DSKNENIFSLKING 155 +I++NL A G ++ + ++ G Sbjct: 917 NLPPLVKMDEFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVSGKGNNNIKLRIIVQDTG 976 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + ++ + + L ++ + V Sbjct: 977 IGIKAEKQEEIFKAFSQENAESTREFGGTGLGLSITRRLVDMMDGQISLQSTAGKGSVFK 1036 Query: 211 A 211 Sbjct: 1037 I 1037 >gi|296125344|ref|YP_003632596.1| PAS/PAC sensor signal transduction histidine kinase [Brachyspira murdochii DSM 12563] gi|296017160|gb|ADG70397.1| PAS/PAC sensor signal transduction histidine kinase [Brachyspira murdochii DSM 12563] Length = 393 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 74/235 (31%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQ 51 ++ + L +L L + + H+I +P+G+I ++L+D + + + Sbjct: 143 ESAQKLKRAEQLASLTTLAAGVAHEIKNPLGSISIYVQLIDKIIKKNMDNDCQCYKDFKE 202 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103 + + ++ I L + + + + + + Sbjct: 203 YSDIIKEEIGRLEDTINSFLFSVRKLELNIEDVNINALILSTVSFLKYEIEKNNVSIDIK 262 Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLAR 159 + + + L + + L+N+ A ++ K + N + S+K G + Sbjct: 263 FDKDNLILKLDERYIKQALINIIQNAIDAMNDNKKEIYIKLKTIDNYAVISIKDTGIGIK 322 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V+ + + + E + L Sbjct: 323 EEDLN-KIFEPYFTTKRHGTGLGLTNVVRIIEAHNGNITIESEYGKGSEVIIKLP 376 >gi|224538850|ref|ZP_03679389.1| hypothetical protein BACCELL_03746 [Bacteroides cellulosilyticus DSM 14838] gi|224519525|gb|EEF88630.1| hypothetical protein BACCELL_03746 [Bacteroides cellulosilyticus DSM 14838] Length = 473 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 + + + + +L + + H+I +P+ AI LL ++ ++E I + Sbjct: 231 LMRAKDLAIEA-ELKQSFLANMSHEIRTPLNAIVGFSNLLVSEDDLPDEEKADFINTINT 289 Query: 59 SAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + M ++ + + + ++ + Sbjct: 290 NCELLLKLINDILELSRIESGNMTFSYSTCNLNNWVDSMYLTHSLLIPKEIEFIKEVPDA 349 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++I+ N A K+ + S E ++ G E+ Sbjct: 350 AFFINTDVNRLSQIMTNFLNNATKFTKSGYIKLGYEIDFSTYEVSIYVEDTGKGIPKEEQ 409 Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +++A + ++ + LL Sbjct: 410 RMIFERFYKQDEFVQGTGLGLSISMVIAEKLGGKISVASEIGKGSRFTFLLP 461 >gi|220913623|ref|YP_002488932.1| histidine kinase [Arthrobacter chlorophenolicus A6] gi|219860501|gb|ACL40843.1| histidine kinase [Arthrobacter chlorophenolicus A6] Length = 553 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 17/228 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAII 62 ++ + ++ + + H++ +P+ +I L + + D ++ ++ +A Sbjct: 313 DVTALVEALSAKDQFVASVSHELRTPLTSILGYLSIAMDEEGLDPELEHCLEVAKRNAER 372 Query: 63 RLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L + + + D Q V ++ Sbjct: 373 LLNLVADLLTIASGTLTVRPRQADLAEVAAQSVDAAQPRAASGGVTLSLETEGPAPGRFD 432 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + NL A PRGG VT+ V+ + + G + Sbjct: 433 PDRLGQAIDNLVSNAIKYTPRGGVVTVRVRTEDGRLVCEVADTGVGMTDQDLANAFTRFF 492 Query: 172 -----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + ++ + + L Sbjct: 493 RTATAHSSAIPGAGLGLAITRSIIENHRGSVTLASSHGEGTTATLTLP 540 >gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 1167 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 58/243 (23%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + + +L + + + H++ +P+ + ELL ++ Sbjct: 780 RQQWQLTVHKQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPVQRSYAG 839 Query: 55 LSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + D L ++ +++ + Sbjct: 840 SIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQRRLEFQR 899 Query: 104 WTGEKID-----LSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNL 157 + +ILLNL A R + + ++D+ F + +G Sbjct: 900 GNDPQGPISVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLEDNGGGVCFEVYDSGPG 959 Query: 158 ARF------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 +F Q S + LA R+ E Sbjct: 960 INAEQQERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPGKGARFRV 1019 Query: 212 LLE 214 L Sbjct: 1020 RLP 1022 >gi|197124740|ref|YP_002136691.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196174589|gb|ACG75562.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 646 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------------GI 45 + L + L AL L + + H++ +P+ AI L +L Sbjct: 408 LKTAQDQILRTRRLAALGSLGAGLAHELNNPMTAIVGYLAILKRELPPGSAHAEMIGRAQ 467 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E + + + + ++ L E + Sbjct: 468 EQTARVARVVEDLRSFADQERSMQGRRFSLVAPVRAALALYEDRLRAAGIELTTRFDERL 527 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF 164 + + +++ +L A ++PRGG + +S + G Sbjct: 528 PDAQGDPVQIQQVVAHLVENAINAMPRGGSLEVSLGTVDGEALRLRIADTGKGIPVT-IR 586 Query: 165 TQIVDGNVEST-IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + R++ E + ++ LL Sbjct: 587 ERIFDPFFTTKEHPGRVGLGLSVSHSIVEAHHGRIVVESEEGAGAAITVLLP 638 >gi|167644599|ref|YP_001682262.1| multi-sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167347029|gb|ABZ69764.1| multi-sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 501 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 64/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEV----- 49 + + L A+ + S + H++ P+ AI N L LLD ED+ Sbjct: 252 LRDLQTELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLLDRGRPEDQAKVRDA 311 Query: 50 --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 ++ + + + S + + + Sbjct: 312 VDKASAQALRAGDVIHRMREFVRRGATERAPESLSKVVEDAAALALIGAREHLVQTRLQL 371 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLA 158 + ++L+NL A ++ + +++ S+ G+ Sbjct: 372 DPAADAVYADRVQIQQVLVNLIRNAVDAMADSPRRELTIASQRLANGSVQVSVTDTGSGI 431 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + + + ++ + V L Sbjct: 432 -SDDFRERLFQPFMTTKAEGMGVGLSISRSIVEAHGGKIWADANPTGGTVFHFTLP 486 >gi|16801788|ref|NP_472056.1| hypothetical protein lin2727 [Listeria innocua Clip11262] gi|16415263|emb|CAC97953.1| lin2727 [Listeria innocua Clip11262] Length = 459 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 22/233 (9%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ + Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQKEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELADINY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ NL A P GG + + + + + +G E +I Sbjct: 347 SGDAELLYQVWSNLLNNAIKYTPLGGNIQVRLYEETTNVFVEVWNSGAGI-SKEDMAKIF 405 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D S + + + + E D L K Sbjct: 406 DRFYKASQSRTREEGSSGLGLSICKKIITLHHGEITVESNTDKGTTFKVKLPK 458 >gi|319900106|ref|YP_004159834.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415137|gb|ADV42248.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 479 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S I H++ +P+ AI SL+LL++ E + ++ I + + + Sbjct: 263 STISHELKTPVSAILMSLQLLEDRRVGTLNDEQEQLSRSIRDNANRLLGITAELLNMTQV 322 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE------------RAKILL 120 G + + + ++IE I ++ + + A +L Sbjct: 323 EAGKLQMMPKITKPIELIEYAIKANQVQADRFNIHIEVEYPDGKIPKLFVDSEKIAWVLT 382 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDS 178 NL A G+V I V + ++ G + + + Sbjct: 383 NLLSNAIRYSKENGRVIIGVSHEDDFIEMYVQDFGKGIDPRYHQSIFDRYFRVPGTKVQG 442 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + L+ Sbjct: 443 SGLGLSISKDFVEAHGGTLTVQSEPGKGSRFMLRLK 478 >gi|303242270|ref|ZP_07328757.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590180|gb|EFL59941.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 492 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 73/239 (30%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + L + + I HD+ +P+ +I ++ L + M +I Sbjct: 242 LKSALEQQLKYDEERNEFIASISHDLKTPLTSIKGHIDGLKDGVADTPEKTARYMDIIYK 301 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103 + + + T ++ + + + ++++ Sbjct: 302 KVIDMDRLINDLTFYSNQTLKKVPFNFSKVNLKIFIEDMIDEYQIELDKLGITITSCYNL 361 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP 161 S + +++ N+F + + ++ I VQD +++ + + NG + Sbjct: 362 SGDTLVKADSEKLKRVIANIFENSIKYMNNENSQIKIDVQDRQDKVLIGIHDNGEGIKKE 421 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + E+ R+ E + + LEK Sbjct: 422 HLPNIFNRFYRADPSRNTTKGGSGLGLAIASQIIEEHGGRIWAESEFGNGTSIYFQLEK 480 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gi|300075807|gb|ADJ65206.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ L + + S + H+ +P+ + + L E E + Q S Sbjct: 317 LVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSG 376 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLG----------------DIEQVIEDFIAVDKRVQVSW 104 L + T D + + Q + ++ R+ Sbjct: 377 NRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDV 436 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161 + R+ ++L NL A G + + + +K G + Sbjct: 437 PQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGPQQLTMRIKDTGIGIAASQQN 496 Query: 162 EKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + + L +L+ + S L Sbjct: 497 DIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLP 551 >gi|282858517|ref|ZP_06267689.1| sensor histidine kinase/response regulator [Prevotella bivia JCVIHMP010] gi|282588702|gb|EFB93835.1| sensor histidine kinase/response regulator [Prevotella bivia JCVIHMP010] Length = 565 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 70/215 (32%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF----MRLAFG 72 S I H++ +PI AI SL+LL++ + DE +L + ++ LK +++ Sbjct: 348 SVISHELKTPISAILMSLQLLEDKRIGTLSDEQQELAKSIGDNSDRLLKITGELLKMTQV 407 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------------ERAKILL 120 +GS+ + ++IE I + + + A ++ Sbjct: 408 ESGSLQLSPKVTKPIELIEYAIKATHVLAERFECNIEVEYPTEKMPKLFVDSEKIAWVIT 467 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDS 178 NL A P+ G++ I + ++N ++ G T + + Sbjct: 468 NLLGNAIHYSPQHGRIIIGARQTENRIEIYVRDFGKGIDPRYHDTIFERYFRVPGTKVQG 527 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + E L Sbjct: 528 SGLGLAISKDFVEAHGGNIRVESEIGKGSCFIVTL 562 >gi|229057029|ref|ZP_04196423.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603] gi|228720306|gb|EEL71882.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603] Length = 466 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 60/215 (27%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + + ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + E +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKLK 458 >gi|227082827|ref|YP_002811378.1| osmolarity sensor protein EnvZ [Vibrio cholerae M66-2] gi|227010715|gb|ACP06927.1| osmolarity sensor protein EnvZ [Vibrio cholerae M66-2] Length = 438 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPALGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|94314241|ref|YP_587450.1| histidine kinase sensor [Cupriavidus metallidurans CH34] gi|93358093|gb|ABF12181.1| Histidine kinase, sensor, two components regulatory system (zniS) [Cupriavidus metallidurans CH34] Length = 529 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL----------------- 40 A+ + L++ +A L S + H+ +P+ I + L Sbjct: 281 ARTLEITLANERRMAELQRNFVSMVSHEFRTPLTVIDGYAQRLSHIKPPLSLEAVQDRSS 340 Query: 41 --DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + L + + + + ++ + + + Sbjct: 341 RIRAAVRRMTALIEDMLGASQVLDLATPGAFQRTEFSLHLLVHEVCEMHRESSPDAQIVE 400 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + +R + + NL A P V++ V + + G Sbjct: 401 QWHADVPEVFHGDARLLFQAVSNLIGNAVKYSPPKTPVSVDVSMESGAILICVADQGIGI 460 Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + V G + + Y V L A + + + L Sbjct: 461 PEKDLGHVFERYVRGANVTGTAGAGVGLYIVRLAAELHGGTVSVRSAEGTGSRFLLRLP 519 >gi|148253525|ref|YP_001238110.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146405698|gb|ABQ34204.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 455 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/258 (9%), Positives = 71/258 (27%), Gaps = 44/258 (17%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPI--------------GAIHNSLE------ 38 + + + + +L L + + H++ +PI ++ L+ Sbjct: 196 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLMRYRTSLVGYLDAVHEQP 255 Query: 39 ----------------LLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 +L++ + + ++ S + G V+ Sbjct: 256 VADELAALRSDLRIDAILEDFGPLIEGTLEGAVRISEIVKNLRRLSFSKLGEVERVNIER 315 Query: 82 GLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-- 137 + VD +++V + ++++NL A ++ + Sbjct: 316 LINTAVLWAGRTKQHRVDIQIEVEPDVWISGNEGQLHQVIVNLVENAIDAMRSTEQPRLL 375 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIR 196 ++ NE +F + NG + + + + + E+ Sbjct: 376 VAAGRQGNEIVFRIADNGPGIDQDHLSHIFEPFFTTKRVGEGTGLGLWISYGIVREHGGE 435 Query: 197 LLPEIIDDHNVVLSALLE 214 L+ + S L Sbjct: 436 LIASNASEGGATFSFALP 453 >gi|327396224|dbj|BAK13646.1| aerobic respiration control sensor protein ArcB [Pantoea ananatis AJ13355] Length = 778 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 26/231 (11%) Query: 10 SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 +++ + S I H++ +P+ I +L + + E ++ ++ +SAI Sbjct: 274 DALESASREKTTFISTISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGN 333 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKI 109 + L + F+ Q+ + Sbjct: 334 IFNDVIEVDKIERRKVQLDNQPVDFTSFLADLENLSGLLAQPKGLKFVMAPQLPLPHKIS 393 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +IL NL A +G V + F ++ +G R E+ Sbjct: 394 TDGTRLRQILWNLIGNAVKFTQQGEIVVRVAYEQDETLRFEVQDSGQGIRQEEQDKIFAM 453 Query: 170 GNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I LA + + +++ Sbjct: 454 YYQVTDQHGGKPATGTGIGLAVSRRLAQAMGGDISVNSAPGQGSCFTVVIK 504 >gi|291615972|ref|YP_003518714.1| ArcB [Pantoea ananatis LMG 20103] gi|291151002|gb|ADD75586.1| ArcB [Pantoea ananatis LMG 20103] Length = 787 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 26/231 (11%) Query: 10 SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 +++ + S I H++ +P+ I +L + + E ++ ++ +SAI Sbjct: 283 DALESASREKTTFISTISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGN 342 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKI 109 + L + F+ Q+ + Sbjct: 343 IFNDVIEVDKIERRKVQLDNQPVDFTSFLADLENLSGLLAQPKGLKFVMAPQLPLPHKIS 402 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +IL NL A +G V + F ++ +G R E+ Sbjct: 403 TDGTRLRQILWNLIGNAVKFTQQGEIVVRVAYEQDETLRFEVQDSGQGIRQEEQDKIFAM 462 Query: 170 GNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I LA + + +++ Sbjct: 463 YYQVTDQHGGKPATGTGIGLAVSRRLAQAMGGDISVNSAPGQGSCFTVVIK 513 >gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] Length = 1227 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT---- 74 + + H+ +P+ + E+L + + + + + + + + LK + ++ Sbjct: 354 ANVSHEFRTPLTLVLGPMEEMLADRELPERYLDRLTVMHRNGLRLLKLVNTVLDFSRLES 413 Query: 75 -------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 D + V KI+LNL Sbjct: 414 GRLAARYQPTDLSDYTSRLASTFRSATERAGLRLVVDCPPLPAPVYVDRDMWEKIVLNLL 473 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178 A G D + G E F + G T + Sbjct: 474 SNAVKFTFDGEIRVRVRADDGAAV-LEVTDTGVGIAPEELPQVFERFHRVAGARSRTHEG 532 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L + + + D + + Sbjct: 533 TGIGLALVRELVEMHGGTVTAHSVVDRGTTFTVTMP 568 >gi|229592506|ref|YP_002874625.1| putative phytochrome/sensor histidine kinase [Pseudomonas fluorescens SBW25] gi|229364372|emb|CAY52146.1| putative phytochrome/sensor histidine kinase [Pseudomonas fluorescens SBW25] Length = 747 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 68/237 (28%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 +A+ + ++ L + + HD+ +P+ I ++ + + Sbjct: 504 LARQVQREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISSAID 563 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------V 100 + A R+ + T +++ + + + + Sbjct: 564 TMQQAAARMNVLLEDLLDTSKIEAGRYVVKPVALDVSQMFEEAYSLLAPLAMEKGIDLSF 623 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A PR G + IS + E +FS++ +G Sbjct: 624 NAEPGLQINGDPERLFQVLSNLIGNAIKFTPRQGNIGISAMSNGEEIVFSVRDSGEGIAP 683 Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + Y + + +++ E + + Sbjct: 684 EQLPHVFDRYWTQTENNPTGSGLGLYITQGIVQAHGGKIVAESEVGRGSEFRFTVPR 740 >gi|229524691|ref|ZP_04414096.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae bv. albensis VL426] gi|229338272|gb|EEO03289.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae bv. albensis VL426] Length = 438 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 7/213 (3%) Query: 9 LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65 + +++ ALL + I HDI +P+ I + E++ ++ + + ++ + + Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279 Query: 66 FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +++ VD D+ + + + + + L NL + Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAGLAPALGNPIAIKRSLSNLVV 339 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181 A KV+ + K S++ NG + F G+ + + Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ + + Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432 >gi|218264827|ref|ZP_03478515.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii DSM 18315] gi|218221769|gb|EEC94419.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii DSM 18315] Length = 794 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + K S L + + + H+I +P+ AI LL + DE + +I ++ Sbjct: 412 LRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLTIAENEEERDEYINIISSNN 471 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + + +D L DIEQ +V Sbjct: 472 ELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPEGVQVSFVEKLPYC 531 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ +++ N A G F +K G PEK Sbjct: 532 IIMSDKNRLAQVMTNFINNAIKFTKEGSIRFGYEHKDDKLL-FYVKDTGCGI-EPEKKDL 589 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V S + ++ + + E L Sbjct: 590 VFNRFVKLNSFAQGTGLGLAICQMIIKKLGGEIGVESELGTGSTFWFTLP 639 >gi|196036933|ref|ZP_03104315.1| putative sensor histidine kinase [Bacillus cereus W] gi|218901476|ref|YP_002449310.1| putative sensor histidine kinase [Bacillus cereus AH820] gi|195990456|gb|EDX54442.1| putative sensor histidine kinase [Bacillus cereus W] gi|218535839|gb|ACK88237.1| putative sensor histidine kinase [Bacillus cereus AH820] Length = 337 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 95 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L D I + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E I + K Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 331 >gi|163939207|ref|YP_001644091.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163861404|gb|ABY42463.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 466 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 60/215 (27%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + + ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + E +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKLK 458 >gi|242237781|ref|YP_002985962.1| osmolarity sensor protein [Dickeya dadantii Ech703] gi|242129838|gb|ACS84140.1| histidine kinase [Dickeya dadantii Ech703] Length = 452 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 58/205 (28%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ + E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSKEDDYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + V + LNL + A Sbjct: 295 QMEVADLNSILGEVVAAESGYERVIDSQFADGELTVRISPLSIKRAALNLVVNATRYGNG 354 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVILL 189 +V+ + F ++ +G F V G+ + + V + Sbjct: 355 WIRVSSGRELQ--RAWFQVEDDGPGIDPLQLKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + A L Sbjct: 413 VDAHNGSLDIGTSERGGLRIRAYLP 437 >gi|218245357|ref|YP_002370728.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218165835|gb|ACK64572.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 364 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/214 (9%), Positives = 62/214 (28%), Gaps = 18/214 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 L S + H++ +P+ + LE L + E+ + + ++ ++ Sbjct: 148 LVSDMTHELRTPLTVVRGYLEELADNSIEPSPELYLKLVKETRRLERLIQDLQELSKAEA 207 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + I + +E+ + + +++ + + + +I L + Sbjct: 208 GYLSITLRPINLIPILIALLEKFSDQILDEGPLLKLDYPKSLPPVLADSDRIEQILVNLI 267 Query: 127 HASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSH 179 ++ TI++ ++ S+ G + + F + + + Sbjct: 268 GNAIRYTETGTITIKAWRDRHRVFISVIDTGIGIKPEDLPFVFERFWRADKSRSRYSGGT 327 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I L + + L Sbjct: 328 GIGLAITRRLVELQGGNIEVSSQLGKGSTFTFYL 361 >gi|257058393|ref|YP_003136281.1| histidine kinase [Cyanothece sp. PCC 8802] gi|256588559|gb|ACU99445.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 364 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/214 (9%), Positives = 62/214 (28%), Gaps = 18/214 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 L S + H++ +P+ + LE L + E+ + + ++ ++ Sbjct: 148 LVSDMTHELRTPLTVVRGYLEELADNSIEPSPELYLKLVKETRRLERLIQDLQELSKAEA 207 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + I + +E+ + + +++ + + + +I L + Sbjct: 208 GYLSITLRPINLIPILIALLEKFSDQILDEGPLLKLDYPKSLPPVLADSDRIEQILVNLI 267 Query: 127 HASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSH 179 ++ TI++ ++ S+ G + + F + + + Sbjct: 268 GNAIRYTETGTITIKAWRDRHRVFISVIDTGIGIKPEDLPFVFERFWRADKSRSRYSGGT 327 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I L + + L Sbjct: 328 GIGLAITRRLVELQGGNIEVSSQLGKGSTFTFYL 361 >gi|188584718|ref|YP_001916263.1| PAS/PAC sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349405|gb|ACB83675.1| PAS/PAC sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 427 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 59/235 (25%), Gaps = 31/235 (13%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR 63 + L + + H+I +P+ I L+LL+ + E + I Sbjct: 165 QAEKLAIVGEMAAGTAHEIKNPLATIKGFLQLLESNELPESKRKEYLATITDEVNRMEQL 224 Query: 64 LKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 +K + + + + +K+V ++ + Sbjct: 225 VKEFLHLSKPSNQEEHETNETVSLCKVFQKTLIFFSPQFKNKKVMLNIKCPGHPIYLRGK 284 Query: 116 ----AKILLNLFMVAHASLPRGGKVT------------ISVQDSKNENIFSLKINGNLAR 159 ++ +NL + ++ + + + D + I G Sbjct: 285 SDKLQQVFINLIKNSLEAMEKIPQDCRKLTIKVDIYKSNNKDDKNEKVILEFIDTGPGIP 344 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + I + L+ E L Sbjct: 345 KN-IMNKLFSPFATTKVRGTGLGLPVSIQIIQNLGGYLVAENSPLRGACFRIELP 398 >gi|171915305|ref|ZP_02930775.1| sensory transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 621 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 63/235 (26%), Gaps = 29/235 (12%) Query: 9 LSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 L++ ++ A SR + H++ +P+ A+ ++LL + ++ + ++ + Sbjct: 254 LTTAEMAAQASSRAKSDFLATMSHELRTPMNAVLGMIQLLQKANLKPVEHEYLKTAYEVG 313 Query: 61 IIRLKFMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----- 107 + + ++ D + +E V + ++ T Sbjct: 314 DRLMTMINDILDFSQIDVGTIALVRDRVDLPALLEDVTASVRDEARLRKLDLTAHIAPGC 373 Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++L ++ A G + E F ++ G + Sbjct: 374 PTLFWGDNTRLRQLLRHVVGNAVKFTDSGYVRITAKVVLPGEIQFKIEDTGVGIGKENQE 433 Query: 165 TQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L K R+ E L Sbjct: 434 ALFDAFYQSDSSIRRRHGGTGLGLAISKRLCDAMKGRIWFESEVGRGTTFHIALP 488 >gi|167751596|ref|ZP_02423723.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702] gi|167655404|gb|EDR99533.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702] Length = 900 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + + L A L I HD+ +P+ +I + L DE + Sbjct: 659 KEEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLISNGNSFDEATKNQLYTDIYD 718 Query: 55 LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + VD +I + Sbjct: 719 DSMWLINLVENLLSVTRIEEGRLNLHITEDLVDDVITEALHHVNRKSVEHHITVRHKEDY 778 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++++N+ A P+G + I ++ + S+ +G+ E Sbjct: 779 LLAKMDAKLMVQVVINIVDNAIKYTPKGSNILIKTWKQGDKAVISIADDGDGI-PDEMKE 837 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + S + + + + ++ H V + L Sbjct: 838 RVFDMFYSGANKIADSRRSLGLGLSLCRSIVNAHAGKITVSDNTPHGTVFTITLP 892 >gi|301311598|ref|ZP_07217525.1| two-component sensor histidine kinase [Bacteroides sp. 20_3] gi|300830684|gb|EFK61327.1| two-component sensor histidine kinase [Bacteroides sp. 20_3] Length = 572 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 20/213 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S I H++ +PI AI SLELL++ E + S+ I + ++++ Sbjct: 357 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSNRLLEITGELLKMSQV 416 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124 +G + + ++I+ I + +++V + + L + KI + Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 476 Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179 A G++ I + +K G R+ E + + Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + E Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569 >gi|225174253|ref|ZP_03728252.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225170038|gb|EEG78833.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 455 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------M 50 +A+ + S ++ L L I H++ +P+ I + LE + ++ + + Sbjct: 216 LAETMNRMASRLEDQSNLRKKLTGDISHELRTPLTTIQSYLEAFLDGVMKPDKQNITAVL 275 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105 + + + + + L +V D R+ V+ Sbjct: 276 DESHRLNSLVNDLQELSNAEYRGKNVNLTEMDLNSFVAREAERVRPAMRQKDIRLSVTPH 335 Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159 ++ + + ++L N+ + A +GG+VT++V D+ ++ G Sbjct: 336 EKEAVVLADETLLGRVLGNILINAQKYTQQGGQVTVTVFDAGRRAGVAVTDTGEGISKEH 395 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + I V L + E L+K Sbjct: 396 LPHIFERFYRADASRTRSTGGSGIGLAIVRELLELMDGEVDVESQPGKGSTFRIFLQK 453 >gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 464 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 58/242 (23%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQL 52 KN S L L + + H++ +P+ ++ E++ E + E + Sbjct: 201 EKNRELEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREY 260 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + L+ + + VD+ + D + Sbjct: 261 LGIIMEKGENLLQLITSILDISKIEAGRVRLVLSDVDATQIMRDAIATVLPLARKKGLKV 320 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNL 157 G + +R K+ L + ++ + + G Sbjct: 321 ACDAGAMPRVQADRDKLRQCLVNLCSNAVKFTPAGGTIAVSAEALPGDRLAIHVADTGIG 380 Query: 158 ARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 DG+ + V + + I + + Sbjct: 381 IGEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEVGVRSIPGVGTTFTVI 440 Query: 213 LE 214 L Sbjct: 441 LP 442 >gi|288942691|ref|YP_003444931.1| signal transduction histidine kinase, nitrogen specific, NtrB [Allochromatium vinosum DSM 180] gi|288898063|gb|ADC63899.1| signal transduction histidine kinase, nitrogen specific, NtrB [Allochromatium vinosum DSM 180] Length = 359 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + ALL + H+I +P+G + + +LL+ + + + R+ A Sbjct: 126 TREEQLLSQHQATQALL-RGLAHEIKNPLGGLRGAAQLLERELPDAALREYTRIIIDEAD 184 Query: 62 IRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 M G V+ L + +I +V + D ++ Sbjct: 185 RLQALMNRMIGPHRLPRRTPVNIHDVLEHVRTLILAESPRGPKVHRDYDPSIPDFIADQD 244 Query: 117 KILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ L +A + + TI + K ++ NG+ E Sbjct: 245 RLIQALLNLARNAATAAGPHGCLQFKTRVLRQFTIGSRRHKLVLQVQVRDNGSGI-PDEI 303 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V D + L +++ + E + L Sbjct: 304 RDRIFYPMVSGRPDGTGLGLSIAQELINQHGGLIECESQPGD-TIFHVYLP 353 >gi|229042172|ref|ZP_04189927.1| hypothetical protein bcere0027_2450 [Bacillus cereus AH676] gi|228727169|gb|EEL78371.1| hypothetical protein bcere0027_2450 [Bacillus cereus AH676] Length = 314 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + + S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ E + G + Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADTEYELHIWDQGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308 >gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 687 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 32/244 (13%) Query: 1 MAKNICFNLS------SMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQ 51 M +N+ + + + + + H++ +P+ +I N ++ + E + Sbjct: 175 MRENVRLATERAAAEHASQIKSEFLANMSHELRTPLNSIINFTRIISTGARGPVTPEQID 234 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQ 101 + S L + + + L I D I +K ++ Sbjct: 235 YLNRVRQSGEHLLGLINDILDLSKIEAGRMELFRESFQIGDLIQSVLATASGLVKEKPIE 294 Query: 102 VSWTGEKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + ++LLNL A G + + + G Sbjct: 295 LRSEIAPHLPPVYADRTRVRQVLLNLLSNAAKFTDAGTITVHAEGCNGEIV-IHVSDTGI 353 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 PE +I + + + L + RL E S Sbjct: 354 GI-APEHLEKIFEAFRQLDNASNRRYEGTGLGLAICRRLVDLHGGRLWVESAVGVGSTFS 412 Query: 211 ALLE 214 L Sbjct: 413 FSLP 416 >gi|317489142|ref|ZP_07947666.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325833774|ref|ZP_08166150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|316911762|gb|EFV33347.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325485216|gb|EGC87687.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 377 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 67/240 (27%), Gaps = 33/240 (13%) Query: 8 NLSSMDLVAL------LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 N+++ +L + S H+ +PI ++ +LL ++ ++E + + + Sbjct: 129 NVAAEELASTEMMRAGFISDFSHEFRTPINSLSGFAQLLMEDDLTDEERREYAGIIVEES 188 Query: 61 IIR------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + + + D R+ ++ Sbjct: 189 KRLSGLSERILLLSKMEAAAMLPSIEEVDVAEQLKRTVMLLEPKLEEKDIRIDLNLDACT 248 Query: 109 IDLSRER-AKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNL 157 + + + A++ LNL A P G S +E + + G Sbjct: 249 VSGNADYLAQLWLNLLDNAVKFSPHGGRVSLALYGGRTGEEGRTASADEAVIWISDEGCG 308 Query: 158 AR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + +A + + + V L Sbjct: 309 MDSATMAHIFDRFYQGDSSHASKGSGLGLALCKRIAELHGGTVDVQSAPGKGAVFEVRLP 368 >gi|291294703|ref|YP_003506101.1| histidine kinase [Meiothermus ruber DSM 1279] gi|290469662|gb|ADD27081.1| histidine kinase [Meiothermus ruber DSM 1279] Length = 360 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 +A++ +++ L S + H++ +P+ A+ E L + E + R Sbjct: 123 LAQDFNRMTEALEKVEQHRTELLSSVAHELRTPLSALQGYSEALADGVLPPEQAAAHIER 182 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VS 103 + ++ +V+ + +E ++ + + Sbjct: 183 EVRAMGRLIDDLALVSRIEAQAVELHPQVVAVEAAFQEALERYATAFEACGVALKLNPLP 242 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160 + ++L NL A P GG+V +S + + G Sbjct: 243 SSVALWADPLRLQQVLSNLLSNALRYTPAGGEVVLSASLQSHHVRICVCDTGVGIPLEHQ 302 Query: 161 PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + L ++ E L + Sbjct: 303 PRIFERFYRADPARSRHTGGSGVGLTIAKGLVEAMGGQMGFESEVGKGSCFWFTLPR 359 >gi|284052122|ref|ZP_06382332.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291571292|dbj|BAI93564.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 378 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 56/230 (24%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----------EVMQLI 53 N S+ +L S + HD+ P+ ++ +LL + ++ Sbjct: 148 NQQLLRSNQELE-QFASVVSHDLQQPLTSLKAFAQLLQIECSDQLKEKPREYVNHIINAS 206 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L + + + + + +++ + + Sbjct: 207 IRMQRMIQDLLIYCGCDTHSPALELIDCNQVLAQILVDLRLEIEKNNAQIKYNNLPQIKA 266 Query: 111 LSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 + ++ NL A + IS Q++ IF NG E F Sbjct: 267 NNIHLTEVFQNLISNAIKYRSDDLAPLINISCQETDTNWIFCCADNGIGIDSQEFENIFK 326 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + ++ E K Sbjct: 327 IFTRLHTFKKYPGTGIGLSICKKIIESYGGKIWLESNPGLGTQFYFTFPK 376 >gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] Length = 586 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 19/226 (8%), Positives = 65/226 (28%), Gaps = 25/226 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + S + H++ +P+ +I ++ L ++ + +I + S L+ Sbjct: 350 EQMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAMEDADTARHFLDIISIESGRLYRLLQD 409 Query: 67 M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + + ++V +R+R Sbjct: 410 ILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDKQLAFEIRVEDNLPPFACNRDR 469 Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L+N+ A G V +++ + + G + ++ + Sbjct: 470 ISQMLINIIENAVKYTEHGS-VITTIEKRGDNLKICVSDTGIGIPADQL-DRVFERFYRV 527 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + V + + + + L Sbjct: 528 DKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSSEVGKGSEFTIFLP 573 >gi|197116915|ref|YP_002137342.1| HAMP/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086275|gb|ACH37546.1| sensor histidine kinase response regulator, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 997 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 67/242 (27%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + ++ ++ + +L I HD + + ++ + EL L +Q I +SS Sbjct: 617 EAQMLHVQKLESLGVLAGGIAHDFNNILMSVMGNAELALLTLPPESPARTNLQNIEISSQ 676 Query: 59 SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + M +D + ++ ++E I+ V+ + +S + Sbjct: 677 RAADLARQMLAYSGKGNFIIEKIDVNRLINEMNHMLEVSISKKVDVRFNLDSGLPLVSVD 736 Query: 115 RAKILLNLFMVAHASLPRGGKVT----------------------ISVQDSKNENIFSLK 152 +I + + + G F + Sbjct: 737 ATQIRQVIMNLVINASEAIGDRCGVISISTGAMECDAAFLSKLWLNDTLKEGTYLYFEVA 796 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +G +I D + + V+ + +K + + Sbjct: 797 DDGCGMDQATL-AKIFDPFFTTKFTGRGLGMAAVLGIIRGHKGTIEVHSEPGKGSRFTVF 855 Query: 213 LE 214 L Sbjct: 856 LP 857 >gi|108756768|ref|YP_628988.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108460648|gb|ABF85833.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 859 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 64/245 (26%), Gaps = 30/245 (12%) Query: 1 MAKNICFNLSSMDL-----VAL-----LCSRICHDIISPIGAIHNSLELLDE------VG 44 +A+ + L + L A+ S H++ +P+ ++ L+D Sbjct: 607 LARRVAVALENASLYRDAQAAVRLRDEFLSVASHELKTPLTSLKLQHGLIDRAALGDVGD 666 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + + VD + D +E+ + Sbjct: 667 KVRPRLATAVRQVQRLSALVDSLLDVSRISLGRLMLEPSDVDLGQAVRDAVDRMEEVFSQ 726 Query: 97 DKR---VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 V+V + ++L+NL A + + + + S++ Sbjct: 727 AGCPVRVEVPGPLPGKWDALRLDQVLVNLLTNAAKYGAGRPVLVEAAFEGEEMVRVSVRD 786 Query: 154 NGNLARFPEKFT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G + + + + Y + R+ E + + Sbjct: 787 EGIGIAAEDLPRLFGRFERAVSDRHYGGLGLGLYISRQIVDAMGGRIEVESRPGLGSIFT 846 Query: 211 ALLEK 215 L + Sbjct: 847 VRLPR 851 >gi|320104460|ref|YP_004180051.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319751742|gb|ADV63502.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 976 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 30/225 (13%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70 + L S + H+I +P+ I E+L + E + +R+ + L + Sbjct: 536 SFLAS-MSHEIRTPLTLILGYTEMLMDQETEPWKTEALRVVRHNGEYLLALLNDILDLSK 594 Query: 71 ------FGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119 VD L D+ + + + ++L Sbjct: 595 IEAGKLETRFEPVDPFDLLRDVVDPFQPRARAKGLRLELTCATPLPRRVVTDPVRVRQVL 654 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN------ENIFSLKINGNLARFPEKFTQIVDGNV- 172 +NL A +G ++ + + ++ G PE+ +++ Sbjct: 655 VNLIGNALKFTDQGSVRVVASAEWEPTTGSARWIEIAVHDTGIGM-TPEQMSRLFRPFEQ 713 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + LA + E + V Sbjct: 714 VDPSLTRRHEGTGLGLAISRRLARMLGGNITVESVAGQGSVFRFR 758 >gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] Length = 764 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 60/234 (25%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + S + H+I +P+ AI + LL + I ++ + + S Sbjct: 146 ARQEALRAAQAK--EYFLSNMSHEIRTPLNAILGFVNLLMDEDISNKHRNYLDIILNSGE 203 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + ++ + + + ++ + V Sbjct: 204 NLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSKDITITSFIDPRIP 263 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E +I+ N A P GG + + + S+ NG + Sbjct: 264 KELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEASCHNQQLTISVNDNGVGINKEDLQN 323 Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + LA ++ + Sbjct: 324 IFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGSTFWLDIP 377 >gi|256005571|ref|ZP_05430531.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|281418897|ref|ZP_06249915.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|255990479|gb|EEU00601.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|281407354|gb|EFB37614.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316941508|gb|ADU75542.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 463 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 76/230 (33%), Gaps = 18/230 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 N+ L + + L + + + H++ +P+ + + +E + + + + ++ + Sbjct: 232 NLAQTLENQEALRKKMSADMAHELRTPLATLQSHMEAMIDGIWEPDADRLKSCYEEIIRI 291 Query: 61 IIRLKFMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + Y +V + L + + +++++ G ++ Sbjct: 292 NKMVGDLEKLAKYESEGFVLDKTVFDMSALIRRIICNFEPEFKNNGIEIAFEGGTEEIFA 351 Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + +++++NL A GGKV IS + + +K NG + F ++ Sbjct: 352 DKDKMSQVIINLLSNALKYTQEGGKVEISAKSKGDVLEIRVKDNGQGIPEEDLPFVFERL 411 Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + + L K Sbjct: 412 YRADKSRNRKTGGAGIGLTIAKTIVEAHNGHIEVYSKINEGTEFLITLPK 461 >gi|220917725|ref|YP_002493029.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955579|gb|ACL65963.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 379 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 64/219 (29%), Gaps = 10/219 (4%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60 + + L I HD+ +P+G I SL +L + + + I A Sbjct: 161 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRGRVGDDERARKHVDRIGEQLGVA 220 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 + + + +G + + V V+ G + + Sbjct: 221 NGIITNLLDMIRNRPLAREPVDVGQVVAAAAAAVKHAPGVSVAVEGFEGLPPVDGDPGQL 280 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +NL A + G VT+ + +++ G + ++ + + + Sbjct: 281 RQVFVNLLENAAFAAAPQGAVTVRARRDDGALEVAVEDTGPGVDPATRR-RLFEPLITTK 339 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 340 DKGIGLGLALVKRIAERHGGSVEYSDRPGGGARFTVRLP 378 >gi|149174474|ref|ZP_01853100.1| sensory box histidine kinase [Planctomyces maris DSM 8797] gi|148846584|gb|EDL60921.1| sensory box histidine kinase [Planctomyces maris DSM 8797] Length = 488 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 63/220 (28%), Gaps = 21/220 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFGYT 74 A S + H++ +P+ I +E+L + E E +L + + + Sbjct: 251 AEFVSSVAHELKTPMSGIKAYIEMLIDGDCEPEEADELYGFINDQIDRLTRLVNSMLNLA 310 Query: 75 GSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119 ++ + + + D + + + + ++ + + Sbjct: 311 RIESGVVEIKRHDHELNDILKTAADVISPTATEKDIKFTAELSDMYLPVFVDKDMLGQAI 370 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD-GNVEST 175 +NL A P G +V + + + ++ G P F + + Sbjct: 371 INLLSNAVKYTPNGREVRLRSRMEDTTAVIEVRDTGLGIPENSLPHIFDRFYRVPENNRS 430 Query: 176 IDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALLE 214 + V + + + + D + + Sbjct: 431 AAGTGLGLALVHFIVTNVHNGSISVQSQVDEGTCFTVTIP 470 >gi|116748924|ref|YP_845611.1| signal transduction histidine kinase, nitrogen specific, NtrB [Syntrophobacter fumaroxidans MPOB] gi|116697988|gb|ABK17176.1| signal transduction histidine kinase, nitrogen specific, NtrB [Syntrophobacter fumaroxidans MPOB] Length = 491 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/232 (8%), Positives = 64/232 (27%), Gaps = 22/232 (9%) Query: 4 NICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 ++ + ++ L A+ + + I H++ +P+G+I EL+ E + + +I Sbjct: 244 SVRNQIQKLERLAAVGKVSAHIAHEVRNPLGSIKTLTELIREDLRPDETQAKYADVILDQ 303 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDL 111 ++ + + L + + F V+ + + Sbjct: 304 VGRLDRLIEDVLSFSRSSLLNVEKAELPVLLSQMIDLARHSFPEKGVNVEEQYDPVLPPV 363 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISV---------QDSKNENIFSLKINGNLARFPE 162 + ++ V + + + +K +G Sbjct: 364 WCDPERLCQAFLNVLINAFEACAAGGHIKVSATYERGGTANGSVIGIRVKDDGPGIPESN 423 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + R+ + LL Sbjct: 424 L-QKVFEPFFTTKSHGTGLGLACTYNIINAHGGRIEFANRPSGGASVHILLP 474 >gi|325287849|ref|YP_004263639.1| integral membrane sensor signal transduction histidine kinase [Cellulophaga lytica DSM 7489] gi|324323303|gb|ADY30768.1| integral membrane sensor signal transduction histidine kinase [Cellulophaga lytica DSM 7489] Length = 495 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLI 53 MA I N+ + L L + + HD+ +P+ + +E L + E + + + Sbjct: 255 MADTIVSNIDKIQSVDTLRRELIANVSHDLRTPLAILKGYVETLQIKKDTLTEVQKDEYL 314 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQ 101 +++ + + F Y+ + I + +Q Sbjct: 315 QITHNNIDRLSNLINQLFEYSKLESEQVTPVKEPFSITELSYDLIEKFKVIAEKKQITLQ 374 Query: 102 VSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + E + + + + L A GKVT++++ + ++ G Sbjct: 375 MDASNENNFVYADVSMVERALQNLLENAIKYTEPNGKVTLAIKKQAKKVEINITDTGAGI 434 Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + + V + + + S L Sbjct: 435 PINEQPYIFDRYKQLDKSEKKRGAGLGLAIVKKIMEMHDTTITVLSKPKEGSTFSFTLP 493 >gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] Length = 619 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 19/233 (8%), Positives = 53/233 (22%), Gaps = 30/233 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--LIRLSSMSAIIRLKFMR- 68 + + + H++ +P+ +I +E L + G ++ + + + + Sbjct: 371 EKIRKDFVANVSHELRTPLTSIKGYVEALLDGGKDEPATATAFLEIIMRQSNRLNLILDD 430 Query: 69 ----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRE 114 VD L VI+ Sbjct: 431 LLQLSQIESGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWVVEGDEER 490 Query: 115 RAKILLNLFMVAHAS--------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++ +NL A + + + + +G + Sbjct: 491 LVQVFINLLENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIPEADRPRV 550 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V + + ++ E L Sbjct: 551 FERFYRVDKARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLP 603 >gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 962 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + + + + + H++ +P+ I +L+LL + + +L+ Sbjct: 463 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDANRLVEAM 522 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 S+ + LK + ++ + + E + I + Sbjct: 523 QNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYLPLVVKKRLELYCYI 582 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + + ++L NL A G V V + +F ++ G Sbjct: 583 DPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVVCSDEGYLVFKVRDTGVGIDT 642 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + Sbjct: 643 RAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEFGIRIP 701 >gi|262193875|ref|YP_003265084.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262077222|gb|ACY13191.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 321 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 57/219 (26%), Gaps = 23/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM------- 67 S + H++ +P+ +I +E L + +D+ + L+ + + Sbjct: 86 SSVSHELRTPLTSIRMFIETLRDNRVTDPEDKDQCLALLEREMHRLDGLVARLIELTRME 145 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + V V+ + A+ L+NL Sbjct: 146 TGKHNFRRDPVSIDEVVRDALAAFDAATLPTRIPIDVTVTPGMKVTGDRATLAQALVNLL 205 Query: 124 MVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTI 176 A P + K + NG E+ ++S Sbjct: 206 TNAWKYTPNEQPCIGLTATPHGKRHIEIVVADNGIGIPRAEQKAIFDKFERGQEAIQSRT 265 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +K R+ H L K Sbjct: 266 GGVGLGLATVRAIVRAHKGRIELRSRPGHGSEFRIYLRK 304 >gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697] gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697] Length = 629 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 15/235 (6%), Positives = 60/235 (25%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50 + + + + + L + + + H+I +P+ AI LL ++ + + Sbjct: 383 LKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYMEDAKEREYYI 442 Query: 51 QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 LI ++ + + + + + ++ Sbjct: 443 SLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVPEGVTLKK 502 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARF 160 + + ++ +I L + +L + + + ++ S+ G Sbjct: 503 RYPASPFLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKISVTDTGRGIPQ 562 Query: 161 PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + Sbjct: 563 EKLGVIFERFEKVDSYIQGAGLGLSICKSIIEQMNGTIEVASVLGEGSTFTVTFP 617 >gi|196232941|ref|ZP_03131790.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222919|gb|EDY17440.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1151 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRL 55 + M+ + L I HD+ + +G I SL++L + + +L + Sbjct: 771 EQQFLRAQRMESIGTLAGGIAHDLNNSLGPILMSLDVLRMKFPDPDSRELLDLIQSSAQR 830 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S+ L F R G +V L +IE+++ D + +++ + + + + Sbjct: 831 SADMVRQVLSFGRGIEGRKMAVQVKHLLREIEKIVNDTFLKNIQMRADFPRDLWTVVGDP 890 Query: 116 ---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157 ++LLNL + A ++P+ + ++ +G Sbjct: 891 TQLHQVLLNLCVNARDAMPQGGLLSITAENLTLDAQYAALNPEAKPGRYVLIRVEDSGTG 950 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + Y + + + + + L Sbjct: 951 I-PPEILEKIFDPFFTTKEVGKGTGLGLYTSLGIVKSHGGFVRVSSEVNQGTRFQVYLP 1008 >gi|126731309|ref|ZP_01747116.1| C4-dicarboxylate transport sensor protein DctB, putative [Sagittula stellata E-37] gi|126708220|gb|EBA07279.1| C4-dicarboxylate transport sensor protein DctB, putative [Sagittula stellata E-37] Length = 586 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 66/233 (28%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 +A S L AL + + + H++ P+ A+ L LL + Sbjct: 347 LAVAEQSLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRPDEALTAFHR 406 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSW 104 + LI F R VD L ++E R+ Sbjct: 407 IDDLIERMGAITRQLKGFARKGQETFSPVDMGEALASSLSMMEPQLKSRRVKITRLLPDT 466 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163 + + ++L+NL A + + + + S++ NG+ E Sbjct: 467 PVKVMGDRMRIEQVLVNLLRNALDATKSVDDPQVEIILAAGETATLSVRDNGDGI---ED 523 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + + E RL +D V L Sbjct: 524 LDALFEPFYTTKAPGDGVGLGLAISSGIVSELGGRLTARNGEDGGAVFEMQLP 576 >gi|154249101|ref|YP_001409926.1| histidine kinase [Fervidobacterium nodosum Rt17-B1] gi|154153037|gb|ABS60269.1| histidine kinase [Fervidobacterium nodosum Rt17-B1] Length = 466 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 74/236 (31%), Gaps = 22/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60 K + + + I H++ +P+ AI +E +L+ ++E+ + + + + Sbjct: 230 EKEVQKLKELDKIKTNFIANISHELRTPLAAIKAYVETMLNMPMSQEEIHEFLDVVYSQS 289 Query: 61 IIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I + + ++ + + + +A +K V V + ++ Sbjct: 290 IRLEELLSDLLDFSQLESHTMKILKESVNICEIIEHSIETLENMAKEKDVTVEYNCSNLE 349 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLAR---FP 161 + +R +I + + ++ + D ++ NG F Sbjct: 350 IKCDRKRIEQVIVNLLSNAIKFSDQAKEKRFVRIDVLDEGEIVKIIVEDNGIGIPESAFD 409 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + + + V + ++ +L E L K Sbjct: 410 KIFERFYRVDNELTYAVPGTGLGLAIVKEIVELHEGNILVESEVGKYTKFIVTLPK 465 >gi|219848012|ref|YP_002462445.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542271|gb|ACL24009.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 430 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 54/236 (22%), Gaps = 40/236 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L + + H++ +P+ ++ +E L D +++ + + + + Sbjct: 194 LVANVSHELRTPLASLKLLVETLQSAPPPDIAARMLEQMAQEIDAVTQLVDELHELSRLE 253 Query: 78 D---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + I E VS + ++LLNL Sbjct: 254 SGRVSLKLEPLAVWPVIERAIERIRPQAERKHHTICTEPVSDLPPALMDGDRIGQVLLNL 313 Query: 123 FMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 A P + + + S++ G + Sbjct: 314 LHNAVKFTPEGGTITVAAQVLHIAVDDPPSRTDRPPHPAGTWILISVRDTGIGISSRDIR 373 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + L + R+ + L Sbjct: 374 -RIFERFYKVDRARTRHTGGTGLGLAIAKHLVEGHGGRIWASSQEGRGSTFWFTLP 428 >gi|302035688|ref|YP_003796010.1| heavy metal sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300603752|emb|CBK40084.1| Heavy metal sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 467 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 19/218 (8%), Positives = 49/218 (22%), Gaps = 20/218 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLEL-LDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 S H++ +P+ + EL L V++ ++ + Sbjct: 244 QFSSDASHELRTPLTVMKGESELVLRRPRPVEDYIAVLESNLEEIDRMSRIVEELLFLSR 303 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + ++ VD + +++LN Sbjct: 304 ADLGQVKTECEPVRLEALVEDIQRQACLLGQERGVDVIMGTIQPATVRGDELRLRELILN 363 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----- 176 + A G V I + S++ +G Sbjct: 364 IVDNAVKYSYPQGTVDIDLLVEGRTARLSVRDHGIGIPQDAHKQIFDRFFRTDDARAHTK 423 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + + + +L Sbjct: 424 KGTGLGLAICAWIAEAHHGHIEVQSEIGQGSTFTIVLP 461 >gi|260427187|ref|ZP_05781166.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp. SE45] gi|260421679|gb|EEX14930.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp. SE45] Length = 577 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 +A S L AL + + + H++ P+ A+ L LL E Sbjct: 338 LASAEQTLEQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRPEEAMTAFHR 397 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104 + LI + R VD L ++E + + ++ Sbjct: 398 IDDLIERMGAITRQLKSYARKGQSQLSPVDMGEALASSLSMMEPQLKARRVRIAKILPDE 457 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163 + ++L+NL A + I + S + S++ NG+ E Sbjct: 458 PVRVMGDRMRIEQVLVNLLRNAIDATKSEAHPEIEIILASGETAVLSVRDNGHGI---ED 514 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + + + RL D V L Sbjct: 515 LDALFEPFYTTKQPGDGTGLGLAISSGIVADLGGRLTARNGSDGGAVFEMQLP 567 >gi|229494556|ref|ZP_04388319.1| sensor kinase, two-component system [Rhodococcus erythropolis SK121] gi|229318918|gb|EEN84776.1| sensor kinase, two-component system [Rhodococcus erythropolis SK121] Length = 483 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59 A S + H++ +P+ I EL + + D M I + Sbjct: 248 ASEESARRSEEKMR-RFVGDASHELRTPLTTIRGFAELYRQGAMTDTETLMNRIEGEASR 306 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108 + ++ + + D+ V D + + + E Sbjct: 307 MGLLVEDLLMLARLDEQRPLENKPVDLLAVAADSVQAARAIAPDRTVELQMTGGPGLPEV 366 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 +++ NL A P +VT+ V ++N + + G + F Sbjct: 367 HGDEARLRQVVANLVGNAIKHTPPDAQVTVRVGTTENSAVVEVSDTGQGLSDEDAARIFE 426 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V L + + E L + Sbjct: 427 RFYRADTSRTRETGGAGLGLSIVSALVAAHDGTVSVETSLGQGTTFRVELPR 478 >gi|228920112|ref|ZP_04083461.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839568|gb|EEM84860.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 463 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 61/214 (28%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 241 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 300 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 301 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 360 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + ++ G + + Sbjct: 361 NAIRYTNQKGNIVITLEQIYDYCELKIQDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 420 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + E D +S L Sbjct: 421 GLGLAIVKQIVHIHGGQWQIESEKDKGTTVSIKL 454 >gi|223983561|ref|ZP_03633744.1| hypothetical protein HOLDEFILI_01025 [Holdemania filiformis DSM 12042] gi|223964489|gb|EEF68818.1| hypothetical protein HOLDEFILI_01025 [Holdemania filiformis DSM 12042] Length = 499 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 18/236 (7%), Positives = 66/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MA+ + ++ ++ + + + H++ +P+ +I +LL ++ + + Sbjct: 232 MAETVEQKVAELETENQEKEIFINNLSHEMKTPLTSILGYTQLLRRTKMSPQDAEQALDI 291 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWT 105 I + + + + ++ R+ V Sbjct: 292 IESEARRMERLSSRLMQLIVAARPLSECSAAALDSFIEQAVLRLKPALREKSLRLCVECE 351 Query: 106 GEKIDLSRERAKILLNLF-MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + E + L A + +TI + ++ +++ G + P Sbjct: 352 PLTVLIDEELMQAALRNVLDNAVKASQPQTLITIEAKTTETGWQITVRDEGCGIQDPH-P 410 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + + + + + H + + Sbjct: 411 ERMLQPFVMEDQARSRKHHGAGLGLALTQRIVQAHGGMVEIDSQPGHGTEVRFVFP 466 >gi|198282503|ref|YP_002218824.1| signal transduction histidine kinase, nitrogen specific, NtrB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665404|ref|YP_002424693.1| sensor protein PilS, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247024|gb|ACH82617.1| signal transduction histidine kinase, nitrogen specific, NtrB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517617|gb|ACK78203.1| sensor protein PilS, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 530 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLS 56 A + L AL L + I H+I +P+ I ++ LL + ++ ++ Sbjct: 292 ASALRAREREAQLAALGRLAANIAHEIRNPLSVIRHAGNLLAERMDDPASQHLLDILERE 351 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGEK 108 ++ ++ + + + I L ++ + D + ++S Sbjct: 352 TVRINAIVESVLEMARPSPAHSEPISLRSWLPMLTAQLQADPLLAPMSIVIGEISPQLTV 411 Query: 109 IDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ NL + +V + + + +L+ G E Sbjct: 412 YADPAQLRRVFWNLLHNSAQYGVAEDATMRVEIDAVPEDEGSIMVTLRDFGPGV-KAEVM 470 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V L N R+ E V+ L + Sbjct: 471 ERIFEPFFTTNPRGTGLGLSMVRELLRINDGRITCENHPQGGVLFRIFLPR 521 >gi|195940752|ref|ZP_03086134.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4024] Length = 741 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + M V L + HD + + I SLEL D + + ++ Sbjct: 390 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTDSSSPDAPRITRALKAAERGAM 449 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + + + + + +++ Sbjct: 450 LTQRLLAFSRKQALHPHAVEMKPLLENLSELMRHSLPATLTLDIEAQTPAWPVWIDVSQL 509 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G E + Sbjct: 510 ENAIINLVMNARDAMEGQNGVIKIRTWNQRVTRSDGRRQDMVALEVIDHGCGM-SQEVKS 568 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 569 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 620 >gi|253700058|ref|YP_003021247.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774908|gb|ACT17489.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 810 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 68/242 (28%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + + ++ + +L I HD + + +I + +L LD ++ I ++ Sbjct: 424 QQQLLHTQKLESLGVLAGGIAHDFNNILTSIIGNADLALIHLDPASPAMINLKRIEKAAT 483 Query: 59 SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A K M + D + + +++ +++ I+ + + + + Sbjct: 484 RAADLAKQMLAYSGKGRFVVEATDINLLVEELKHILQVSISKKAVMNYNLARSLPAVDAD 543 Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152 +I + + + + Sbjct: 544 ATQIRQVVMNLVINASEALGEKDGVINITTGSVQCDGNYPQETWPTDTVLQGPYVFVEVA 603 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G PE ++I D + + V+ + +K + V + L Sbjct: 604 DTGCGM-SPETVSKIFDPFFTTKFTGRGLGMAAVLGIVRGHKGTIKVGSESGKGSVFTVL 662 Query: 213 LE 214 L Sbjct: 663 LP 664 >gi|148657711|ref|YP_001277916.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569821|gb|ABQ91966.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 577 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 56/226 (24%), Gaps = 28/226 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFG 72 ++ + + H++ +P+ AI ++LL E++ + + L + Sbjct: 310 SMFLATMSHELRTPLNAILGYVQLLHLEAHMRGRSEMLPDLERIRSAGKHLLTIISNILD 369 Query: 73 YTGSVDSLIGLGDIEQ---------------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 ++ + + + + V G + + + Sbjct: 370 FSKIEQGKMNVEINPFSVDTVAREVIGIIDPLARNRKNTLNLVCPPDAGMMQSDAGKVRQ 429 Query: 118 ILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 IL NL A G V + FS+ G PE+ + Sbjct: 430 ILFNLLSNAVKFTEEGTVTLTVERERHPDGDWVQFSVADTGIGI-APEQMAHLFQPFYQV 488 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + V + L Sbjct: 489 HQNRSRNYGGTGLGLALSRQLCRLLGGDIRVTSEVGRGSVFTVRLP 534 >gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 919 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/248 (8%), Positives = 61/248 (24%), Gaps = 36/248 (14%) Query: 3 KNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLELLDEVG----- 44 K+ ++ L A S + H++ +P+ +I E+L E Sbjct: 661 KSQELEAATAKLRAANDRLKELDRMKDDFMSTVTHELRTPLTSIRALSEILLETPQASLA 720 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIA 95 + + +I + + + + + + + F Sbjct: 721 ERQKFLGIIVKEAERLTRLINQVLDMAKIESGNAEWHTSELDLREVIEESVAATYATFND 780 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSL 151 + + +R +++ + + ++ V + Sbjct: 781 RHVTLTQDLASHTPRIRADRDRLIQVMLNLLSNAVKFCHPTRGQVHVSLRQEPGGLRVDV 840 Query: 152 KINGNLA---RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + NG+ F + + + + + RL + + Sbjct: 841 RDNGSGISAANQKIIFERFRQVGDTMTNKPQGTGLGLPISRHIIERFGGRLWVQSEPGNG 900 Query: 207 VVLSALLE 214 S L Sbjct: 901 ATFSFTLP 908 >gi|75911003|ref|YP_325299.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704728|gb|ABA24404.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1287 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/251 (7%), Positives = 59/251 (23%), Gaps = 37/251 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL- 55 + + + + + + H++ SP+ AI +LL + ++ I Sbjct: 879 LQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQARRLSEAQTAKGLETIERN 938 Query: 56 ----------------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + I L + I+ ++ Sbjct: 939 AKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETTIENINLAAQAKEIDLTFFLENP 998 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLP----------RGGKVTISVQDSKNENIF 149 + + +++ NL A P + + + + Sbjct: 999 ATENLPFQVSGDPERLQQVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNSYAQI 1058 Query: 150 SLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-ID 203 + G F + + + + + V L + + + Sbjct: 1059 QVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGE 1118 Query: 204 DHNVVLSALLE 214 + + L Sbjct: 1119 EQGSTFTVKLP 1129 >gi|95929116|ref|ZP_01311861.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135017|gb|EAT16671.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 595 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 57/221 (25%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMR---- 68 + + H++ +PI AI +E L + ++ ++ ++++ + ++ + Sbjct: 373 FVANVSHELKTPITAIKGFVETLLDGALDSRDESEQFLKIVERQVERLSVIIEDLMSLSR 432 Query: 69 ------LAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKIL 119 + + + + ++ + + L Sbjct: 433 IEQGEEHERFDLEPEKLAEVISESVNDCTVLAEGLGITLKQELDQDLTSPLNAPLLEQAL 492 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 NL A VTI + I + G E ++ + Sbjct: 493 TNLLENAIKYSSTDSTVTIRCYEEDGRAIVRVCDEGCGI-EAEHLPRLFERFYRVDKARS 551 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E L Sbjct: 552 RQAGGSGLGLAIVKHIVQIHHGRVEVESTPGKGSDFIISLP 592 >gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 57/217 (26%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ I ++LL + +E + + + + Sbjct: 350 AVLSHELRTPLNPILGWIKLLRTHQLSEEKKAIALETIERNAKLQTQLIADLLDVSRILQ 409 Query: 80 LIGLGDIEQVIEDFIA-------------VDKRVQVSWTGEKIDLSRER---AKILLNLF 123 +I V ++ + + +++ NL Sbjct: 410 GKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPDVQLFMGDASRLQQVVWNLL 469 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVESTIDS 178 A P GG+V I ++ + + G + D Sbjct: 470 TNAVKFTPTGGEVKIKLESTNTYTQIQVSDTGKGITPEFLPYVFETFRQADSATTRKFGG 529 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V + + + + +D + + L Sbjct: 530 LGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLP 566 >gi|320102458|ref|YP_004178049.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749740|gb|ADV61500.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 815 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 68/256 (26%), Gaps = 43/256 (16%) Query: 1 MAKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLEL-----LDEVGIED 47 + + L A + I H+I +PI A+ E+ ++E Sbjct: 367 LQRETEEELRRAKQAAEEANQAKSRFLANISHEIRTPIAALCGYSEMVLEPQMEEPERRQ 426 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IA 95 ++ + R S + + + G + ++ED IA Sbjct: 427 TLLAIRRNSRHLLELVDDILDFSKIEAGEMTIEHCPVSPRWILEDLLTTMGGRARSKGIA 486 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----------ISVQDSK 144 + R+ +ILLN A R ++ ++ + Sbjct: 487 IHHRIVEPIPDTITTDPTRLRQILLNFLSNAIKFTDRDKRIDLILQVEPVPASGTLHSAA 546 Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLL 198 N +F+++ G PE +++ + LA + Sbjct: 547 NRLVFTVEDQGPGI-APENLSRLFQPFWQVDGSITRRYGGTGLGLSISQRLAELLGGVIE 605 Query: 199 PEIIDDHNVVLSALLE 214 E L Sbjct: 606 VESEVGRGSRFRFALP 621 >gi|307353942|ref|YP_003894993.1| multi-sensor signal transduction histidine kinase [Methanoplanus petrolearius DSM 11571] gi|307157175|gb|ADN36555.1| multi-sensor signal transduction histidine kinase [Methanoplanus petrolearius DSM 11571] Length = 597 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 63/214 (29%), Gaps = 21/214 (9%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIRLKF--------M 67 H++ +P+ I L LL + + E+ ++ LS+ ++ Sbjct: 382 AHELRTPLQPILGYLHLLTDKDYQAEMSPEVASIIEKCLLSTERECEIVEKILEAGLSES 441 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 ++ + +I + + + V +S + ++ + + A Sbjct: 442 FKINLNVEEIELKQLVEEILNINKIRCNAEVIVDLSDSVRFNADRDRIYQVFEGIILNAV 501 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STIDSHDI 181 KV+IS ++ + +I S+ NG + + Sbjct: 502 KYNSDPKKVSISYREDDSNHIISISDNGIGIPPDSVNDIFEPFFIRNSSDLVRGTGRIGL 561 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +K + + + + +L K Sbjct: 562 GLSIAKRYISLHKGDIRVQSVPGEGSTFTVILPK 595 >gi|284803022|ref|YP_003414887.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578] gi|284996163|ref|YP_003417931.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923] gi|284058584|gb|ADB69525.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578] gi|284061630|gb|ADB72569.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923] Length = 459 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S + + H++ SP+ ++ LL + ++ Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + S+D L E V W+ + +L+ Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLADV 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++ NL A P+ G + I + + ++ +G + Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISKVDMTKI 404 Query: 164 FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + S + + + + + + + L K Sbjct: 405 FDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458 >gi|229015740|ref|ZP_04172721.1| hypothetical protein bcere0030_3280 [Bacillus cereus AH1273] gi|228745545|gb|EEL95566.1| hypothetical protein bcere0030_3280 [Bacillus cereus AH1273] Length = 224 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRL 55 M + + + + + I H+I +P+ A+ ++ L++ + ++Q I Sbjct: 5 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNLEDTMSYEIMLQEIER 59 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDL 111 + + + + L + Q++E + V +QV Sbjct: 60 INEFVSELMLLGKPKPTNYEWCNIREILLYVVQLMESYATQYKVKFHLQVDGNLPVINGD 119 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P+GG + I S++ G EK +I Sbjct: 120 DKQLKQVLLNIIKNGIESMPKGGDIQIRAYKKAGENLCISIEDQGFGI-ENEKIEKIGKA 178 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 179 FYTTKENGTGLGLMITYKIIEEHQGSIAIQSSVGVGTKVEIYLP 222 >gi|149195676|ref|ZP_01872733.1| hypothetical protein LNTAR_17328 [Lentisphaera araneosa HTCC2155] gi|149141138|gb|EDM29534.1| hypothetical protein LNTAR_17328 [Lentisphaera araneosa HTCC2155] Length = 589 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 57/220 (25%), Gaps = 22/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--------------IR 63 S + H++ +PI LE +++ + + ++ Sbjct: 365 FVSNVSHELKTPITVTMGFLEAMEDCLDDPDQIKYFYNIIKRNTHRINDIIQDLLILSRL 424 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLN 121 + + L +I + D I VS + + N Sbjct: 425 EIDEKNQNFGFMEKNIAHTLQNIVALTSDEINKKNVSLVSGFEDQVIVANHSLVELAVRN 484 Query: 122 LFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-- 175 L A + + DS+N I + NG F + + Sbjct: 485 LLENAIRYSHKDAPLVTLSLADSENHWIIRVSDNGPGIHTKFQGRIFERFFRMDESRDRN 544 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + ++ + + S L K Sbjct: 545 TGGSGLGLAIVKHIAQLHNGKIHLDSSLGNGCTFSLYLPK 584 >gi|121534002|ref|ZP_01665828.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121307513|gb|EAX48429.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 361 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-----------S 59 + L L + I H++ +PI I +LE + + IE QLI L Sbjct: 138 NEKLRKRLLADIAHELRTPITIIQGNLEGMIDGIIEPNKAQLISLYEEAVHLSRLIKDLR 197 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKI 118 + L T + I + + S +I Sbjct: 198 DLSLANAGHLPLEKTKVSLLQLAGRSIALLNPIAEEKGILLSYSGSDAIVEADPGRTTQI 257 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173 + NL A +VT++V + ++ +G + Sbjct: 258 IQNLLSNALRYAR--TRVTVTVTEEDEWAEVAVADDGPGIPPEHLPHIFDQFYRIDEARD 315 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V L + + + +K Sbjct: 316 RQSGGSGIGLAIVKSLVEAHGGTVSVHSVPGEGTTFMVRFKK 357 >gi|154253570|ref|YP_001414394.1| signal transduction histidine kinase, nitrogen specific, NtrB [Parvibaculum lavamentivorans DS-1] gi|154157520|gb|ABS64737.1| signal transduction histidine kinase, nitrogen specific, NtrB [Parvibaculum lavamentivorans DS-1] Length = 371 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51 MA+ + L+ + V + + + H+I +P+ I + +LL+ + + + + Sbjct: 123 MAQKMDRQLTHRGAARSVTGMAAILAHEIKNPLSGIRGAAQLLELSGSPDDKTLTRLICE 182 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 F V+ + LG ++Q+ A R+ + + Sbjct: 183 ETDRICKLVDRMEVFSDERPVPREPVNIHLVLGHVKQLATTGFARGIRIVEEYDPSLPPV 242 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENI---------------FSLKI 153 ++ +++ A ++ + + + Sbjct: 243 LGDKDQLIQVFLNLVKNAAEAIGNPDGEIVLTTAYRPGVRLSMPGSRDRVSLPLEICVID 302 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +G + + D V + + V + ++ + E + + LL Sbjct: 303 DGPGV-ADDLMEHLFDPFVTTKSSGTGLGLALVAKIIGDHGGIIECESLP-RRTIFRVLL 360 Query: 214 E 214 Sbjct: 361 P 361 >gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 893 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 AK + S L + + H++ +P+ + ++LL+ ++E +Q++R S+ Sbjct: 503 AKEMAEATSRAK--TELLATLSHELRTPLNGVMGGVQLLEMTDLSADQEEYLQMVRTSAT 560 Query: 59 SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105 + + + + + + L + + + + S Sbjct: 561 NELALVNDLLDLAGLEASGLKVESTPFNLLESIKLAITLHRSALETRGLPLVTSLPESLA 620 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFP 161 I R +I+ NL A +GG S+ + G Sbjct: 621 QLVIGDGRRLTQIVSNLLGNAIKFTEQGGISLAADCTPCGGSELRLQVRVSDTGIGIAEK 680 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + V + LA + + I + L Sbjct: 681 DL-QRIFEPFVQADMSSTRRFGGTGLGLAICHRLAERMGGSIRVDSIPGEGSSFTLELP 738 >gi|86357941|ref|YP_469833.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86282043|gb|ABC91106.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 867 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 70/246 (28%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + L+ + Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 523 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583 Query: 107 EKIDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSL 151 + ++L+NL + A ++P S +++ + + Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPDGGTLTLRTRNLTAADVATFNYSYMPAEDMVLVEV 643 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE +I + + + V + ++ + PE Sbjct: 644 ADTGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702 Query: 210 SALLEK 215 L + Sbjct: 703 RVFLPR 708 >gi|52144035|ref|YP_082793.1| sensor histidine kinase [Bacillus cereus E33L] gi|51977504|gb|AAU19054.1| sensor histidine kinase [Bacillus cereus E33L] Length = 466 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + S+K G + + Sbjct: 364 NAIRYTHQNGDIMITLRQIDDYCELSIKDTGIGIDKEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458 >gi|301057171|ref|ZP_07198302.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300448729|gb|EFK12363.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 411 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 61/224 (27%), Gaps = 17/224 (7%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60 +L + + I H+I +P+ I L + + ++ +I + Sbjct: 177 LATQVEKRSSLGRMAAGIAHEINNPLTGILLYSSNLRKKVEKGSQLEEGLNIIIKETQRC 236 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRER 115 +K M L + I V +F ++ ++ ++ Sbjct: 237 KRIIKGMLEFSREQEPEMMLADINRIMESALGIVENEFRLRQVHIRKELAQNMVNTFLDK 296 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDG 170 +I + +L + + + S + + +G E +I + Sbjct: 297 NQIEQVFINLLLNALQAVEEKGLVIVRSDVDSKAGSVHMEVSDDGCGI-VEENLNKIFEP 355 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + +K + + L Sbjct: 356 FFSTKGDGTGLGLAVSYGIVENHKGNIRVISKPNRGARFIVELP 399 >gi|229071024|ref|ZP_04204250.1| hypothetical protein bcere0025_31970 [Bacillus cereus F65185] gi|228711964|gb|EEL63913.1| hypothetical protein bcere0025_31970 [Bacillus cereus F65185] Length = 417 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58 K + + L + I H+I +P+ +H +LL+E +D+ ++++ + Sbjct: 195 KEKLQRAEKFYIASELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 254 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111 + ++ I + I ++D V+ + + + Sbjct: 255 QIQSTINNYLSLTKPQNTLKEKIDINHILNQVKDTISPLALSYKVEIKQNSTDSFYINGD 314 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + L N+ ++ GG + I++Q K + + +G + +I Sbjct: 315 PEKFKLCLNNIIQNGIEAMKNGGLLQINIQKVKGNIMIDIIDSGIGMSSQQIK-RIALPF 373 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 374 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 416 >gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 19/229 (8%), Positives = 56/229 (24%), Gaps = 25/229 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66 S + + + H++ +P+ I ++++ + ++ L+ + Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDEEQHKQIKVLLESGDHLLSLLNDI 466 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRE 114 + + ++ VI+ + + ++ I Sbjct: 467 LDFSKIEQNKLELNHASFYFNDVIDPIANTYQSICEDKGLQFIIDNNINEKTIFIGDKPR 526 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVD- 169 +I+ NL A +G + ++ G R Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAVQIKVQDTGIGIRKKRLKHIFEPF 586 Query: 170 ----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L K + + + +L Sbjct: 587 IQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635 >gi|209549555|ref|YP_002281472.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535311|gb|ACI55246.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 867 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 73/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + L+ + Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLMEIK 523 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151 + ++L+NL + A ++P GG S +++ + + Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLIEV 643 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 NG PE +I + + + V + ++ + PE Sbjct: 644 ADNGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702 Query: 210 SALLEK 215 L + Sbjct: 703 RVFLPR 708 >gi|168703766|ref|ZP_02736043.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 483 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + S L A+ L + + H+I +P+ +I ++ E + +R+ Sbjct: 248 LHERELEVIRSEHLAAVGQLAAGVGHEIRNPLTSIKMLVQTGLEGAAPPLSAEDLRIIES 307 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKID 110 + ++ + D+ V ++ G + Sbjct: 308 EIRRMERSLQTFLEFARPPKLERRPTDLGAVLESVLGLVRGRAEQQRVATRLELPGPPVV 367 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 L+ + ++ A +P GG +T+ + + + G ++ Sbjct: 368 LTADAGQLQQVFVNLVLNALDVMPTGGALTVRARAAGGGIEVEVSDTGPGISKTMLP-RL 426 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + ++ + L Sbjct: 427 FVPFASSKDTGLGLGLVISRRIVEDHGGTMNAGNRAGGGASFFVRLP 473 >gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 596 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 72/232 (31%), Gaps = 26/232 (11%) Query: 8 NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 L ++ + + + H++ +P+ + + +E L D+ + D ++++ + Sbjct: 356 ELERLESMRREFVANVSHELKTPLTTVKSYVETLLDGAADDPEVRDRFLRVVDGETERMA 415 Query: 62 IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + R + + +V D + +V Sbjct: 416 RLVRDLLRLTQMDEGTLRWNVRPQDVGELVAETVGRLRVQADRKRLTVLCEVDPETPPAL 475 Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIV 168 + ++++NL A P GG++ +SV + ++ G + +I Sbjct: 476 CDYDKIQQVVINLLANAIEFTPNGGQIRVSVAPEGADAVRVTIADTGIGIPAQDLP-RIF 534 Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + D ++ L Sbjct: 535 ERFYRVDKARSRSMGGTGLGLSIAKQIVELSGGAIAIASEVDRGTTVTFTLP 586 >gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 597 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 63/245 (25%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVALLCSR-------ICHDIISPIGAIHNSLELLDEV----GIEDEVM 50 + + AL + + H++ +P+ AI ++L + Sbjct: 311 RRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGFSDMLASEQLSPADPSKRR 370 Query: 51 QLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK- 98 + + S + ++++ + Sbjct: 371 EYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQELADQCVKMMQLKAEQARI 430 Query: 99 ---RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 E + R +IL+NL A P G+V + + N ++ +G Sbjct: 431 ALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVAVRLYPDGNRLAIAVSDSG 490 Query: 156 NLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + ++ D + + + V L + + E + Sbjct: 491 IGIAAADLG-RLGDPFFQASAAYDRAYEGTGLGLSVVRGLVGLHGGAIAVESAPQRGTCV 549 Query: 210 SALLE 214 + L Sbjct: 550 TVRLP 554 >gi|260426759|ref|ZP_05780738.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45] gi|260421251|gb|EEX14502.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45] Length = 346 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 17/226 (7%), Positives = 59/226 (26%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + H++ +P+ A+ +E L ++ D + ++ + + + Sbjct: 118 FVANVSHELRTPLTALLGFIETLKGPAREDALARDRFLGIMEAEAGRMERLVGDLLSLSR 177 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 T VD + + + + +++ + ++ + Sbjct: 178 VEADERVRPTEPVDLPSMVRSVLSGLAPLAEEAGVELAFELPEGALEVPGDPDQLRQVVV 237 Query: 124 M---VAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDG 170 RG + + + + ++ G + Sbjct: 238 NLVENGVKYSGRGAEVKVSVSGPEYHSRLRGDAVVITVSDTGPGFDPLHIPRLTERFYRV 297 Query: 171 NV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + ++ RL E +L Sbjct: 298 DNHRSREMGGTGLGLAIVKHIINRHRGRLRIESRPGAGAQFRVVLP 343 >gi|239932318|ref|ZP_04689271.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291440682|ref|ZP_06580072.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291343577|gb|EFE70533.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 381 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 52/237 (21%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 137 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 196 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G Q R + Sbjct: 197 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQPADRFLLRVQHPL 256 Query: 109 IDLSRERA---KILLNLFMVAHAS--------LPRGGKVTISVQDSKNENIFSLKINGNL 157 DL + ++L NL A + ++ G Sbjct: 257 PDLWADPDKIDQVLGNLLENAVRHGEGNVTIDITPSVSPRERDGAEHAATSVTVSDEGPG 316 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + + L Sbjct: 317 IPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPEGGAQFRFTLP 373 >gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 645 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 27/257 (10%), Positives = 64/257 (24%), Gaps = 44/257 (17%) Query: 1 MAKNICFNLSSMDLVALL----------------CSRICHDIISPIGAIHNSLELLDEVG 44 +A + L ALL + + H+I +P+ I +++L Sbjct: 242 LAISRDITLQKQAQQALLNAKKDAEAANQSKNEFLANMSHEIRTPLNGIEGMMQMLLSTP 301 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------ 98 + E + I + ++ + + + + ++D Sbjct: 302 LNSEQQKFIEMGHQASRRMTELLSDILDLSRLEAGREDVSKRTFNLKDVCDSLWDLLGIK 361 Query: 99 ----------RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDS 143 + S + S +IL NL A Sbjct: 362 SREKGIPLTFNLSPSLPDTLMGDSTMVRQILFNLVGNALKFTEHGQVTLDIHPLPQSHQD 421 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRL 197 + + +F++ G +K +I + + LA + Sbjct: 422 QLQVLFTVSDTGPGI-PDDKQDRIFKPFDMVNGSLTRKHEGKGLGLTVTHRLAKLMGGTI 480 Query: 198 LPEIIDDHNVVLSALLE 214 + + + L Sbjct: 481 SVDSAEGQGTSIYVTLP 497 >gi|184201521|ref|YP_001855728.1| two-component histidine kinase SenX3 [Kocuria rhizophila DC2201] gi|183581751|dbj|BAG30222.1| two-component histidine kinase SenX3 [Kocuria rhizophila DC2201] Length = 397 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 70/235 (29%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A + + + + + + H++ +P+GA+ E +++ ++E ++ S Sbjct: 137 LADDQTEIVRAQSIRNDFVANVSHELKTPVGAVSLLSEAIEDAAGDEESVRHFAASLQRE 196 Query: 61 IIRLKFMRLAFGYT------------GSVDSLIGLGDIE---QVIEDFIAVDKRVQVSWT 105 +RL + VD +G+ ++ + ++ RV Sbjct: 197 SMRLSALVQDIIELSRLQGTDVVAKGTPVDLNRTVGEAVDRSRLAAETKHIEIRVGGRID 256 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + NL A P +V + +++ ++ G E Sbjct: 257 VPVFGDPDMLVTAVRNLIDNAVRYSPEHTRVGVGLRERDGMAQITVTDQGPGIPESE-QD 315 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + ++ + + +L Sbjct: 316 RVFERFYRVDSARSRQTGGTGLGLSIVKHVMAQHGGEVSVWSQPGRGSTFTLVLP 370 >gi|331085995|ref|ZP_08335078.1| hypothetical protein HMPREF0987_01381 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406918|gb|EGG86423.1| hypothetical protein HMPREF0987_01381 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 453 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59 M + + S + H++ +P+ + + L E + D + I L + Sbjct: 223 MLEQLEMVFQREK---RFTSDVSHELRTPVSVMLAQCDACLSEETLTDRQREQIELIAKK 279 Query: 60 AIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 A + + + + + +Q+I + + R +++ Sbjct: 280 AREMAGLISSLLLLSRADEGRQKLNKERVNLSELTQIIAEEQQMIAEEKEITVRTEITPD 339 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++++NL A GG V IS+Q + + ++ NG + Sbjct: 340 IYAQVDESFYIRMVVNLVSNAVFYGREGGIVKISLQAKEENVVGIVEDNGIGISVHDMEH 399 Query: 163 KFTQIVDGNVESTIDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + T SH + V +A + R+ E + + + Sbjct: 400 IWERFYRADTSRTDGSHFGLGLSMVKWIAEAHGGRVSVESREGEGSRFTFYIP 452 >gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 722 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + + + + + + H+I +P+ ++ +LL++ E + +Q + Sbjct: 237 MAKEEAVSANQLK--SEFLANMSHEIRTPLNSVIGFSDLLEQEVKEPKQVQYLHAIKNGG 294 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + L + I IE + + V ++ + Sbjct: 295 KALLSLINNILDLSKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVTYEIEKNL 354 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLAR 159 I +IL NL A +G T S + + IFS+K G Sbjct: 355 PEWIIADEIRIRQILFNLISNAIKFTEKGSVRLSVLSTPSKNEGFVDLIFSIKDTGIGIS 414 Query: 160 FPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + DG + LA K + E + + Sbjct: 415 PKNQIKIFDAFIQNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIESQLGQGSEFTFTI 473 >gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] Length = 998 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 61/238 (25%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K + L + + H++ +P+ AI E+L E +++ + I Sbjct: 498 KEEAEQANKAKSAFL--ANMSHELRTPMNAIIGYSEILTEDATDNQHQEYIPDLKKINSA 555 Query: 63 -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSW 104 + ++ G ++ I + + ++ ++ Sbjct: 556 GKHLLQLINDILDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKIIKDES 615 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE 162 S + +IL NL A G + QD N ++ G + Sbjct: 616 IQGITGDSVKIKQILFNLISNAAKFTENGTITLGYKTYQDDNNFLSIYVQDTGIGIEKDK 675 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + E + + K Sbjct: 676 AAKVFEEFGQADSSTTRKYGGTGLGLSLVKKFSELMGGSIKLESEIGKGSTFTVTIPK 733 >gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter turicensis z3032] gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032] Length = 703 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 71/240 (29%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 207 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVDRLVTAM 266 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 S+ + LK + ++ + + E + ++ + Sbjct: 267 HNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITANYQPLVVRKQLGLYCFI 326 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + V + F ++ G Sbjct: 327 EPDVPMTLLGDPMRLQQVISNLLSNAIKFTDI-GCIILHVGTQGDYLCFRVRDTGVGIPA 385 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + + Sbjct: 386 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTETGMGSQFTIRIP 444 >gi|223043250|ref|ZP_03613297.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B) [Staphylococcus capitis SK14] gi|222443461|gb|EEE49559.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B) [Staphylococcus capitis SK14] Length = 588 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 52/217 (23%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + + + ++ S + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLGVVLDESKRLNRLVNELLNVARMD 423 Query: 74 -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 +D + + ++L NL Sbjct: 424 AEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHLLWDYDMDRMDQVLTNL 483 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177 A G + ++ + NI + G + F + + Sbjct: 484 IDNASRYTQPGDAIAVTASKDEQYNILYISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQ 543 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ E+ ++ + L Sbjct: 544 GTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLP 580 >gi|261405267|ref|YP_003241508.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261281730|gb|ACX63701.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 629 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 63/223 (28%), Gaps = 10/223 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53 M N M++++ L + + H++ +P+ L+LL + ++ +++L Sbjct: 404 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLTGKAQSTEREYLDLALVELD 463 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDL 111 R S + T S + R+ V Sbjct: 464 RASGIITDFLTFAKPEFGKDTVLRISEEFKHIEGILGPLAHLQGGRITVDIPEDITIRGN 523 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 S + + +N+ + +L G V I + + + NG P+ ++ + Sbjct: 524 SSKFKQAFINIVKNSIEALGDEGLVHIRCYRQQGQVFIHVVDNGEGM-GPDVLARLGEPY 582 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 583 FSNKTKGTGLGLMVTFRIIEAMDGDIYFTSKQGVGTDAVITLP 625 >gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1276 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 23/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77 +R+ H+I +P+ + ELL + + + + S L + ++ Sbjct: 568 ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627 Query: 78 ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123 + L D+ ++E + S +IL NL Sbjct: 628 KLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 687 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A G + +F + +G P+ Q+ + Sbjct: 688 GNAIKFTEHGHVGLSAAYSDDGRIVFKIADSGIGI-APDVAAQLFRPFQQADSSTARKYG 746 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L + V + Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSTPGKGSVFTVTTP 783 >gi|126651422|ref|ZP_01723626.1| sensor histidine kinase [Bacillus sp. B14905] gi|126591675|gb|EAZ85771.1| sensor histidine kinase [Bacillus sp. B14905] Length = 466 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +PI I ++L + + + Q + RL + +D Sbjct: 239 SSIAHELRTPITFIKGYTDILYKRDLSVQDRQKYLAIILEETNRLSRLIKDLFDLAKMDE 298 Query: 80 LIGLGDIEQVIEDFIA---------------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + + + + V +I++NL Sbjct: 299 NSFVIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFDVCCEKGLTLWADEARLEQIIINLLN 358 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179 A +G T+ V+ ++ G + F + + + Sbjct: 359 NALTYCGQGDTTTVDVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKSRSRALGGT 418 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + + + V + Sbjct: 419 GLGLAIVKELVQAHGGEVTVKSELNKGTVFELSFK 453 >gi|108801552|ref|YP_641749.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119870706|ref|YP_940658.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|108771971|gb|ABG10693.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119696795|gb|ABL93868.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] Length = 473 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 58/211 (27%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ I EL + D +M I S + ++ + L Sbjct: 254 SHELRTPLTTIRGFAELYRQGAARDVEMLMNRIESESRRMGLLVEDLLLLARLDAQRPLE 313 Query: 81 IGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFMVAHAS 129 D+ + D + + + T E + ++L NL A Sbjct: 314 RHRVDLLALATDAVHDAQSIAPERTITLQVLDGPGTPEVVGDEARLRQVLGNLVANALQH 373 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDIQFY 184 P+ +T+ V + + + G + F + + + Sbjct: 374 TPKHAGITVRVGTDETNAVLEVCDEGPGMTEEDARRVFERFYRTDSSRARESGGTGLGLS 433 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + + L + Sbjct: 434 IVDSLVLAHGGTVRVTTAPGQGCRFTVHLPR 464 >gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049] gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049] Length = 726 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 7/197 (3%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + HD+ +P+ LELL E + + + + + LA Sbjct: 528 FASVVSHDLRNPLTVARGQLELLREESDSEHIDAIDTAHQRMDTLIDDLLTLARDGASPA 587 Query: 78 D--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + ++ ++ ++ ++ NL A Sbjct: 588 SPVVVDLEQFVQTCWQNVDTKAATLRTDIDRPIRADESRLRQLFENLVRNAVEHGGDDVS 647 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195 VT+ F ++ NG PE+ + + ++ V +A + Sbjct: 648 VTVGELADG----FYVEDNGAGIPEPERGD-VFSAGYSTAVEGTGFGLSIVKQVADAHGW 702 Query: 196 RLLPEIIDDHNVVLSAL 212 + D Sbjct: 703 TVRVVSGADGGARFEFT 719 >gi|116622312|ref|YP_824468.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225474|gb|ABJ84183.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 781 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 64/243 (26%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 A+ + ++ + LL I HD + + ++ + L E + Q Sbjct: 400 AEERLREVQKLESLGLLAGGIAHDFNNLLVSVIGNASLAQERLPAGHPLVELLERVVQSG 459 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ L + +++ + D+ V+++ I+ + + Sbjct: 460 HQAAHLTNQMLAYSGKGKFLVETLNLSALIADMGFVVQESISPRIAIHFQLEENLPPIEA 519 Query: 114 E---RAKILLNLFMVAHASL-------------------PRGGKVTISVQDSKNENIFSL 151 + ++ +NL A ++ + + Sbjct: 520 DRGQMKQVFMNLATNAADAIGSRDGLIIVKTGIRNVDGQFIQRRQEARDLMPGRYVYLDV 579 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 +G +I D + + V + +K + + Sbjct: 580 SDSGCGM-DEATRARIFDPFYSTKFMGRGLGLAAVGGIVRGHKGTVTVSSQPGQGSCFTV 638 Query: 212 LLE 214 LL Sbjct: 639 LLP 641 >gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1172 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52 K L + L I H+ +P+ + LE L+ I + Sbjct: 523 RKQAERLLEADRLKTEFFQNISHEFRTPLTLMIGLLEEAVNYQQDLPLESSAIALRNSRR 582 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110 + + + + SL+ L K + + Sbjct: 583 LLRLVNQLLDLQRLDAGRMQPSFRPCSLVDLCRNIVESFTPYCQKKELSLVTDFSDTCLL 642 Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-- 165 + K++ NL A P GG + IS++ S+ + ++ G R + Sbjct: 643 VYLDVEKFDKVIYNLLSNAMKFTPAGGSIRISIESSQEYCLLKVEDTGIGIRQEQIPFLF 702 Query: 166 ---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + +G+ + + + V L + ++ E + Sbjct: 703 QRFRQAEGSANRSYEGSGLGLALVKELVELHGAQISVESVYGQGTTFKVW 752 >gi|329926967|ref|ZP_08281367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328938797|gb|EGG35173.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 490 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------ 48 + ++I L + L S I HD+ +PI I +E + + + Sbjct: 245 LHESIQLRLRDEENRKELISNISHDLRTPITNIKGYVEGIRDGVADTPEKMDKYVNIIYT 304 Query: 49 -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQV 102 + L +L + ++ VD + + D + + + + Sbjct: 305 KTIDLDKLVDELFLYSKLDLKQVPFMFEHVDIIGFIDDCIDEQRYVLEEKDILLEWKERP 364 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160 E I + + +LN+ A + + + +S++ S ++ NG Sbjct: 365 GDPVEVIADLEKLKRTVLNIIGNAQNFMDKGQKNIGVSIRLSPEWVTVEIRDNGTGIAPE 424 Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + + + ++ E L L++ Sbjct: 425 AIPYIFERFYRAEPSRNSSTGGSGLGLAIASQIIEGHGGQIWAESELGVGTSLYFTLKR 483 >gi|319942263|ref|ZP_08016578.1| nitrogen metabolism transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319804136|gb|EFW01036.1| nitrogen metabolism transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 385 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + + L + H+I +P+G I + +LL+ + DE + + Sbjct: 131 LRAERDAIAEAGRAANSELLRNLAHEIKNPLGGIRGAAQLLESELVRDEDRECTNVILEE 190 Query: 60 AIIRLKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 A + + V+ L + +I A ++ + + Sbjct: 191 AARLQELVDRLLMPYRTPAAAGPVNIHEVLEHVRSLIGLEFAQGLTIERDYDISAPAVFG 250 Query: 114 E---RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKING 155 + ++ LNL A ++ V ++ ++ + NG Sbjct: 251 DRGRFTQVFLNLARNAAEAMTEGRAHGTAVIIFKTRIARDVMLAGTRTRTALRIDVVDNG 310 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V + + V E + E + LL Sbjct: 311 PGV-PEHLKERIFFPLVTGRAEGSGLGLALVKTFVEEAGGSITLESRPGR-TDFTVLLP 367 >gi|297569538|ref|YP_003690882.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925453|gb|ADH86263.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 648 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 25/227 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMRL 69 +L + + H++ +PI +I E L + +++ + + + + Sbjct: 407 ENLRRDFVANVSHELKTPITSIEGFAETLLDGALDEPEQARRFTTIILQQSRRLHAIIED 466 Query: 70 AFGYTGSVD--------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + A + ++V + Sbjct: 467 LLALSRIEQEGKRRATELAELPVLETLQVAARTCADRAAAREITLEVDASPTLRAWINPA 526 Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + L+NL A G + IS Q + +E + S+ G E ++ + Sbjct: 527 LLEQALVNLIDNAIKYGHAGRPIKISGQPAGDEILLSVSDQGPGI-PSEALPRLFERFYR 585 Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + V +A + R+ + + + L Sbjct: 586 VDKARSTSLGGTGLGLSIVKHIAQAHGGRVGVHSVLNRGSTFTLYLP 632 >gi|228932680|ref|ZP_04095554.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826998|gb|EEM72758.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 466 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKICILTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + S+K G + + Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKLK 458 >gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 561 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 30/239 (12%) Query: 5 ICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-- 55 +S+ ++ + + + H++ SP+ + +L+++ E ++ Sbjct: 178 REELISAKEMAERTNAYKSEFLANMSHELRSPLNCVIGFSDLIEQDVEEKCFERIGEYAG 237 Query: 56 -----------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + L L ++ + A +KR+ + Sbjct: 238 LIKAAGKHLLGMITEILDLARIDTGKMRLEKREVHLDELLELIASMLKLPAREKRLSIEL 297 Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + I + ++L NL A G ++ +S Q + G P Sbjct: 298 DCDPIRFEADERRLHQVLHNLLSNAIKFSSEGSRIGVSAQGQGEIVEIVVWDEGRGI-AP 356 Query: 162 EKFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V + + ++ E S L Sbjct: 357 DWLDRIFEPFEQVESGDSELGEGAGLGLAIVKRIVDLHGGQVSVESELGVGSRFSVRLP 415 >gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9] Length = 923 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 420 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 479 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 480 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 539 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 540 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 599 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 600 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 659 Query: 208 VLSALLE 214 ++ L Sbjct: 660 TVTVALP 666 >gi|220919461|ref|YP_002494765.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957315|gb|ACL67699.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 646 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------------GI 45 + L + L AL L + + H++ +P+ AI L +L Sbjct: 408 LKTAQDQILRTRRLAALGSLGAGLAHELNNPMTAIVGYLAILKRELPAGSAHAEMIGRAQ 467 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E + + + + ++ L E + Sbjct: 468 EQTARVARVVEDLRSFADQERSMQGRRFSLVAPVRAALALYEDRLRAAGIELTTRFDERL 527 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF 164 + + +++ +L A ++PRGG + +S + G Sbjct: 528 PDAQGDPVQIQQVVAHLVENAINAMPRGGSLEVSLGTVDGEALRLRIADTGKGIPVT-IR 586 Query: 165 TQIVDGNVEST-IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + R++ E + ++ LL Sbjct: 587 ERIFDPFFTTKEHPGRVGLGLSVSHSIVEAHHGRIVVESEEGAGAAITVLLP 638 >gi|126437537|ref|YP_001073228.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] gi|126237337|gb|ABO00738.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] Length = 473 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 56/211 (26%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ I EL + D +M I S + ++ + L Sbjct: 254 SHELRTPLTTIRGFAELYRQGAARDVEMLMNRIESESRRMGLLVEDLLLLARLDAQRPLE 313 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSRERAKILLNLFMVAHAS 129 D+ + D + + + T ++L NL A Sbjct: 314 RHRVDLLALATDAVHDAQSIAPERTITLHVLDGPGTPEVVGDEARLRQVLGNLVANALQH 373 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDIQFY 184 P+ +T+ V + + + G + F + + + Sbjct: 374 TPKHAGITVRVGTDETNAVLEVCDEGPGMTEEDARRVFERFYRTDSSRARESGGTGLGLS 433 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + + L + Sbjct: 434 IVDSLVLAHGGTVRVTTAPGQGCRFTVQLPR 464 >gi|158520884|ref|YP_001528754.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158509710|gb|ABW66677.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 905 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 68/237 (28%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51 + + + AL + S I HD + + +I +LL + + + Sbjct: 525 LRQAQRRFVDQERQRALSQMASGIAHDFNNALSSIQGFSDLLLQSPEKFSDTPLVKRYVG 584 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKR------- 99 LI ++ A ++ +R + + VD + + + E + Sbjct: 585 LINTAARDAAQVVRRLRKFYRPSDEETIEPVDVNRLIKEAVALTEPVWKHKTQARGAPII 644 Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + E ++L NL A ++P GG ++ + + + G Sbjct: 645 VETRFQEQLSASGNRTELNEVLTNLIFNAVDAMPEGGSLSFGTRREAGWIVLEVSDTGVG 704 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ ++ + + Sbjct: 705 MDATVRRQCMNPFFTTKGEAGSGLGLATVQGIVARHQGQIEIVSEPGNGTTFVLRIP 761 >gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] Length = 692 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 25/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIED-------EV 49 AK + + + + H+I +P+ +I ++ LL E ++ Sbjct: 317 AKTEAEKANKAK--SQFLAMMSHEIRTPLNSILGLVDVFHSSLLSEEQLDWLNQMESSSQ 374 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + L +S + I R++ I + + V+ + Sbjct: 375 LLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQNVP 434 Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++ NL A G + N S+ G Sbjct: 435 KYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTTL-E 493 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + + L + + E + L Sbjct: 494 QLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNIGSTFKITLP 548 >gi|118578862|ref|YP_900112.1| GAF sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118501572|gb|ABK98054.1| GAF sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 458 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 21/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57 + + L A+ + +++ H++ +P+ I L+ + E + + S Sbjct: 226 LRDARERLIRGERLAAVGEMAAKLAHELKNPLITIGGFSWRLIKNLATESPEYRYADIIS 285 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGE 107 + + +T E + + S++G Sbjct: 286 KEVCRLERMLTDILSFTSKPMVCFDYGNCDLEEILGECFEVSSTPLEENNVSLTTSFSGG 345 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161 + + ++ + + V KN + S+ G P Sbjct: 346 PWIVLGDAHQLKQVFLNLILNACECMTDGGALEIGLQKVFLDKNSVMISISDTGGGIH-P 404 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + V + + + E + V + L Sbjct: 405 DMLPRIFDPFFTTKPQGSGLGLAIVKRIMLNHNGSIDVENGE-RGAVFTLTLP 456 >gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC 11218] Length = 807 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K+ + ++ + S I H+I +P+ +I LL + +E + S Sbjct: 459 KDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNLSEEQRNHLITIDKSGK 518 Query: 62 IR----LKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ G VD D + ++ + Sbjct: 519 HLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDLDKSLP 578 Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 +I+LN A +G +E S++ NG + Sbjct: 579 PLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIGLSADD 638 Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + D + + +AH + E L Sbjct: 639 QMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLTL 694 >gi|218550493|ref|YP_002384284.1| aerobic respiration control sensor protein ArcB [Escherichia fergusonii ATCC 35469] gi|218358034|emb|CAQ90680.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia fergusonii ATCC 35469] gi|324115186|gb|EGC09150.1| hsp90-like protein [Escherichia fergusonii B253] gi|325498791|gb|EGC96650.1| aerobic respiration control sensor protein ArcB [Escherichia fergusonii ECD227] Length = 778 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 57/229 (24%), Gaps = 26/229 (11%) Query: 10 SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 +++ + S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 274 DALEQASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLNAEQEKYLKTIHVSAVTLGN 333 Query: 66 FMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKI 109 + L + Q + + + + I Sbjct: 334 IFNDIIDMDKIERRKVQLDNQPIDFTGFLADLENLSGLQAQQKGLRFVMEPTLPLPHQVI 393 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L NL A +G D F + +G E+ Sbjct: 394 TDGTRLRQVLWNLISNAVKFTQQGKVEVRVRYDKGEMLHFEVADSGIGIPQEEQDKIFAM 453 Query: 170 GNVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + V + Sbjct: 454 YYQVKDSQGGKPATGTGIGLAVSRRLARDMGGDISVSSVPGQGSVFTLT 502 >gi|118476874|ref|YP_894025.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196046439|ref|ZP_03113664.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225863262|ref|YP_002748640.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|229183592|ref|ZP_04310815.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1] gi|118416099|gb|ABK84518.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196022623|gb|EDX61305.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225787926|gb|ACO28143.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|228599835|gb|EEK57432.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1] Length = 466 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + S+K G + + Sbjct: 364 NAIRYTHQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458 >gi|320354510|ref|YP_004195849.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123012|gb|ADW18558.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1001 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 71/244 (29%), Gaps = 32/244 (13%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 K + S + A+ L I HD + +GAI E+ E + + + + Sbjct: 613 RKLQTQLIQSQKMEAIGTLAGGIAHDFNNILGAILGYTEMAREIISLDPMASKYLDRVNE 672 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ A +K + S + + +++ + ++ + + Sbjct: 673 AANRASDLVKQILEFSRQVESKRVSLFPIYIVKEAIKLLRPSLPSTILIRQNLETSVWPI 732 Query: 112 SRER---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLK 152 + +IL+NL A ++ + +S +++ Sbjct: 733 IADPTQVHQILVNLCTNAFHAMEKTGGVLEITLQNRELVESDVQHLSEIQPGKFVELAVR 792 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ E +I D + + V + ++ ++ + V Sbjct: 793 DTGDGI-SSEIRDKIFDPFFTTKSVGKGTGMGLSIVHGIVTSHEGFIICDSERGKGTVFR 851 Query: 211 ALLE 214 Sbjct: 852 VYFP 855 >gi|307543661|ref|YP_003896140.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307215685|emb|CBV40955.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 697 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 59/234 (25%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + + S L A+ + + + H+I +P+ I +L++ + LI Sbjct: 461 LERTTEQLVMSEKLAAVGEITAGVAHEINNPVAVIQGNLDVARQSLGSRVDEVATEFDLI 520 Query: 54 RLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + D + + Sbjct: 521 DDQVHRISAIISKLLQFARPGEFSGSANRLVPAEVIDDCLVLTRHLSSKAGVTVERDDRS 580 Query: 108 KIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160 + E ++++NL + A ++P GG +T+ +D + G Sbjct: 581 MASILVERTELQQVIINLVVNAIHAMPEGGTLTLETEDRDVEGVPGVAIIVTDTGRGMMP 640 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + + Sbjct: 641 EVLKRIFDPFFTTKRSQGTGLGLSISQTLMGRAGGWIEAASEEGAGSRFTVWIP 694 >gi|291546652|emb|CBL19760.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Ruminococcus sp. SR1/5] Length = 224 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/206 (10%), Positives = 58/206 (28%), Gaps = 13/206 (6%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---RLKFMRLAFGYTGS 76 S+ H++ +P+ I++ L+++ + + + + L + Sbjct: 19 SKFSHELRNPLTLINSGLQMIASAHPDVKEYEHWDDVMDNLDYVKELLDELSAFNNAGHV 78 Query: 77 VDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128 I + + ++ ++ ++ +R ++ L A Sbjct: 79 KRENIDTCSYLRTILSSIKPTLDYLEITLETDIPDSLPSMALDRIRVRQMLLNLLKNAWE 138 Query: 129 SLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++P G +N ++ NG E+ I + + Sbjct: 139 AVPIPGGKISFSVIPENSGIRIDIRDNGCGI-SKEQQATIFQPFFTTKESGTGLGLAVSK 197 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALL 213 +A + + E V L Sbjct: 198 QIAQAHSGDITLESTPGQGTVFHIFL 223 >gi|282895997|ref|ZP_06304028.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9] gi|281199107|gb|EFA73977.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9] Length = 642 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 28/235 (11%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLSSMS 59 + ++ + L S I HD+ + + I + ++L+ +++ QLI + + Sbjct: 263 LRVQRLESIGTLASGIAHDLNNVLTPILMTAQILETQVKDEKPRQLIPILIANAKRGANL 322 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116 L F R G + L +I+ VI++ + + + Sbjct: 323 VKQVLSFARGMEGERTILQIKHLLIEIQNVIKETFPQSIILTTEIPQSLWTVCGDATQLH 382 Query: 117 KILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161 ++L+NL + A ++P T + + S+K G + Sbjct: 383 QVLMNLCINARDAMPNGGTLSIKSENLLIDDHYIQTHTDLKPGAYVLISIKDTGVGIKPT 442 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V+ + + + ++ L Sbjct: 443 -LIDRIFEPFFTTKNVAQGTGLGLSTVLGIVKAHGGFINVYSRENKGSEFQVYLP 496 >gi|193215934|ref|YP_001997133.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089411|gb|ACF14686.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1215 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS 57 + + ++ + L I HD + + I + L LD+ + + Sbjct: 835 TEQELHRMEKLESIGTLAGGIAHDFNNLLMGIFGKISLAKTALDKTHPAARYLDGAEQAM 894 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 A K + + + + ++ + I F V+ + + + Sbjct: 895 NRATRLTKQLLTFSKGGAPLKEHVNIFELVEEITRFDLSGSNVKALFNQPQNLWLADVDK 954 Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDS-------------KNENIFSLKINGNLAR 159 + NL + A ++PRGG + I+ ++ +++ G Sbjct: 955 GQIQQAFSNLIINASQAMPRGGHLYITFENRDVTNANKEPNLEAGKYVKITVQDEGVGID 1014 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + ++ + E ++ L Sbjct: 1015 KKNI-DYIFDPYFTTKQSGSGLGLTTTYSIIKKHGGTIHVESELGVGTSVTLFLP 1068 >gi|189464191|ref|ZP_03012976.1| hypothetical protein BACINT_00528 [Bacteroides intestinalis DSM 17393] gi|189437981|gb|EDV06966.1| hypothetical protein BACINT_00528 [Bacteroides intestinalis DSM 17393] Length = 479 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 69/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKS 301 Query: 56 SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +A +++ T ++ + QV D + V+ Sbjct: 302 IKENADRLLGITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVE 361 Query: 102 VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 S + A +L NL A G+V I + ++ G Sbjct: 362 YPDEKMPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHEDGIIEMYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVIRLK 478 >gi|182678849|ref|YP_001832995.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634732|gb|ACB95506.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 652 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 + + L L + L + + H++ +P+GAI N++ L E D + + Sbjct: 414 LVQAQEDLLKKERLSTIGQLTATVAHELRNPLGAIKNTVFTLKELSGAKNLKLDRPIARM 473 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEK 108 S + + + + D +AV + V Sbjct: 474 ERSVDRCNSIITHLLEYSRVSALKYECRDFDQWLVDVLDELAVPPTITVERVLAARDRNC 533 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPE 162 ++++NL A +L G + + ++ G E Sbjct: 534 AFDPERLRQVIVNLVENAIHALNDVGAERPEKRLRLSTRQNAGTIELTIADTGPGI-AAE 592 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ D + + V + ++ + ++ ++ Sbjct: 593 NLTRVFDPLFSTKSFGTGLGLPAVKQIVEQHGGTITLASTLGQGTEVTVVIP 644 >gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 708 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +++ S + ++ + + H+ +P+ I +L+ E + E IR Sbjct: 190 RSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLETPLSPEQETYIRAIKT 249 Query: 59 SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQV 102 S + + G +D D ++E + + + Sbjct: 250 SGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELLAPRAQDKGLEIAADLAD 309 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +ILLNL A GG + + ++ ++ G Sbjct: 310 DLPPRVLGDGDRVRQILLNLAGNAVKFTEAGGVGITAERVGEDLV-LAVHDTGPGIPEER 368 Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DG+ + + L R+ +L Sbjct: 369 LPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIETTSRPGAGSCFRVVLP 425 >gi|153955726|ref|YP_001396491.1| sensor kinase [Clostridium kluyveri DSM 555] gi|219856095|ref|YP_002473217.1| hypothetical protein CKR_2752 [Clostridium kluyveri NBRC 12016] gi|146348584|gb|EDK35120.1| Predicted sensor kinase [Clostridium kluyveri DSM 555] gi|219569819|dbj|BAH07803.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 321 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 +N S L + S I H++ +P+ I ++++L ++ ++ + Sbjct: 41 ERNTELLNESQKLNKNITEFISDISHELKTPLNVIFAAIQVLAACKSCEDQKCINKRDEY 100 Query: 53 IRLSSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 +++ + +K + I ++ + + Sbjct: 101 LKIMKENCYRLMKLINNLLDISKLDSGFIRLNCHNENVVSIVEDIALSLVPYVESKGIEL 160 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 E+ ++ + +I+LNL A P GK+ ++VQ +K G Sbjct: 161 IFDTNVEEKIMAVDSDKMERIILNLLSNAVKFTPPEGKIYVNVQCDDENVYIVVKDTGIG 220 Query: 158 ARFPE---KFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + I Y + + + + L Sbjct: 221 IPEDKLKVIFERFGQAGSTVEENQGSGIGLYLAKSFVCLHGGEISVKSSRGGGSEFTVRL 280 Query: 214 E 214 Sbjct: 281 P 281 >gi|90577498|ref|ZP_01233309.1| sensor protein LuxQ [Vibrio angustum S14] gi|90440584|gb|EAS65764.1| sensor protein LuxQ [Vibrio angustum S14] Length = 576 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 61/217 (28%), Gaps = 24/217 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---------------- 63 + I H++ +P+ + + ELL + ++++ +L+ + S + Sbjct: 219 AMINHELRTPLNGLLGAAELLQDTPLDNDQQKLLTTLNHSGELLRAIINDLLDYSKINAG 278 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + + + E + + I +I +NL Sbjct: 279 MLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNIYYSNDLPKIFIGDEDRIKQIFVNLI 338 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A P G V + F++K +G ++ + + + Sbjct: 339 SNAIKFTPA-GFVHAKLWWQNKHLQFTVKDSGCGI-DHSDQHKLFKPFSQVDNTSKRSHE 396 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + E + L Sbjct: 397 GTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVSLP 433 >gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1274 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 75/251 (29%), Gaps = 40/251 (15%) Query: 2 AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49 N +S+ +L + + H++ +P+ AI E L E + + Sbjct: 868 QSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINDKQFKA 927 Query: 50 MQLIRLSSMSAIIRLKF-------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 ++ I SS + + + ++ + +Q ++ I V Sbjct: 928 LETIERSSSHLLDLINDILDVAKIEAGQIKLDCTAISVAALCQSSLVFIKQQALQKRIQV 987 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIF 149 + ++ ++ +D ++L+NL A P +V+ + +N Sbjct: 988 EIKIPLNLPDLFVDER-RIRQVLINLLNNAVKFTPETGRISLEVTQVSPDISTVQNFLQI 1046 Query: 150 SLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 ++ G E ++ + + + V + + R+ Sbjct: 1047 AVIDTGIGIM-QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSEL 1105 Query: 204 DHNVVLSALLE 214 + L Sbjct: 1106 GVGSCFTIELP 1116 >gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 615 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 64/246 (26%), Gaps = 34/246 (13%) Query: 2 AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L + + + H++ +P+ AI E++ + + Sbjct: 333 RKQQELALEQARAEAARADASRSRFLATVSHELRTPLNAIIGFSEMIVQEQALMISAERR 392 Query: 54 RLSSMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----- 97 R + L ++ G + + +A+ Sbjct: 393 REYAQLINDSGQHLLSVVNGILDMSKMDSGNFEILPEPFAPRPALLNCCNLLALKARDSG 452 Query: 98 ---KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 E R +I+LNL A RGG VT+S + Sbjct: 453 IDLVTRAPDDLPEVNGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAAVEGAHLALRVVDT 512 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G + +I D + + + V L + L D Sbjct: 513 GVGIAADDL-ERIGDPFFQAGKTYQRRHEGTGLGLSIVKTLVALHGGELTVASQLDKGTT 571 Query: 209 LSALLE 214 ++A+L Sbjct: 572 VTAMLP 577 >gi|296160597|ref|ZP_06843412.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1] gi|295889123|gb|EFG68926.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1] Length = 944 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 63/238 (26%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ N+ S L L S I HD+ +P+ I +L + +L+ A+ Sbjct: 668 ARDALVNMESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNAELVEAIHEEAL 727 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDL 111 + + L + + + VQV + L Sbjct: 728 RMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLL 787 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA---RFP 161 + ++ NLF A +TI Q + ++ NG Sbjct: 788 HLDAVLMERLFSNLFENAAKYTAPATPLTIGAQRLDADGKSFVRVTVDDNGPGLPAGMEA 847 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP---EIIDD--HNVVLSALLE 214 F + G ES + + + + D L Sbjct: 848 RVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIGALNRVSADGHVEGARFWFTLP 905 >gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1333 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 820 NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 879 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124 + S + D + A K++ + + + K++ NL Sbjct: 880 FEKFKYSKQDIYSFLDEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 939 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181 A P GG V++SVQ+ +N + + G + F + + I Sbjct: 940 NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 999 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ + L Sbjct: 1000 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1032 >gi|294644142|ref|ZP_06721917.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292640507|gb|EFF58750.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1063 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 820 NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 879 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124 + S + D + A K++ + + + K++ NL Sbjct: 880 FEKFKYSKQDIYSFLDEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 939 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181 A P GG V++SVQ+ +N + + G + F + + I Sbjct: 940 NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 999 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ + L Sbjct: 1000 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1032 >gi|291515126|emb|CBK64336.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Alistipes shahii WAL 8301] Length = 349 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 25/220 (11%) Query: 21 RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + H++ +PI I + L ++ I + ++ S I + + Sbjct: 123 NVAHELKTPIFNIQGYISTLLDGGLEDELINRKYLERAEKSIDRLINIVNDLDTISKLES 182 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------------WTGEKIDLSRERAKILL 120 S++ L + IA ++ + ++ + Sbjct: 183 SMNKLNLERFDVVALAKEIAEQAEMEADRKEIRISVKGTDNLPSPFWVLADKHYIGQVFV 242 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 NL + + GG+ I +D ++ + ++ NG+ + F + + Sbjct: 243 NLIINSIRYGKEGGQTRIRFRDMLDKILIEVEDNGSGIAKEDLPRVFERFYRTDKGRSRE 302 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + R+ S L+K Sbjct: 303 QGGTGLGLAIVKHIVEAHGERITVRSELGVGSTFSFTLKK 342 >gi|262382250|ref|ZP_06075387.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295128|gb|EEY83059.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 570 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 20/213 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S I H++ +PI AI SLELL++ E + S I + ++++ Sbjct: 355 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 414 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124 +G + + ++I+ I + +++V + + L + KI + Sbjct: 415 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 474 Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179 A G++ I + +K G R+ E + + Sbjct: 475 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 534 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + E Sbjct: 535 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 567 >gi|256839283|ref|ZP_05544793.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256740202|gb|EEU53526.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 572 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 20/213 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S I H++ +PI AI SLELL++ E + S I + ++++ Sbjct: 357 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 416 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124 +G + + ++I+ I + +++V + + L + KI + Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 476 Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179 A G++ I + +K G R+ E + + Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + E Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569 >gi|241896076|ref|ZP_04783372.1| sensor histidine protein kinase [Weissella paramesenteroides ATCC 33313] gi|241870676|gb|EER74427.1| sensor histidine protein kinase [Weissella paramesenteroides ATCC 33313] Length = 458 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 19/230 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + D+ + H++ +P+ +I E L ++ + +++I+ + Sbjct: 227 DMTEVIQMKDMQTAFVANASHELRTPLTSISGFTETLLNGAQEDPTDRQQFLEIIQSETK 286 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKI 109 + + ++L E V + F A + V+ T Sbjct: 287 RLLDLTDDILTLAKVPERANTLQQFNMSEMVEKIFNAKAEIKDNLNLTLKNEVNDTLVVN 346 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 +IL NL A + G V +S + NE +F++K G E F + Sbjct: 347 QNKSNFEQILTNLIGNAMKYNRQDGSVKVSAMVTANELVFAVKDTGLGIPSDEQNRIFER 406 Query: 167 IVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + V L + + ++ ++ L Sbjct: 407 FYRVDKSRTKSIPGTGLGLAIVNDLVEQAQGKIELTSQVGVGTTITVTLP 456 >gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1342 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 829 NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 888 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124 + S + D + A K++ + + + K++ NL Sbjct: 889 FEKFKYSKQDIYSFLDEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 948 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181 A P GG V++SVQ+ +N + + G + F + + I Sbjct: 949 NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 1008 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ + L Sbjct: 1009 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1041 >gi|229090353|ref|ZP_04221596.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42] gi|228692936|gb|EEL46654.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42] Length = 466 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + S+K G + + Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458 >gi|229154966|ref|ZP_04283080.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342] gi|228628524|gb|EEK85237.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342] Length = 466 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKICISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + ++K G + + Sbjct: 364 NAIRYTNQNGAIMITLRQIDDYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458 >gi|150010494|ref|YP_001305237.1| two-component system sensor histidine kinase, FrrD [Parabacteroides distasonis ATCC 8503] gi|149938918|gb|ABR45615.1| two-component system sensor histidine kinase, FrrD [Parabacteroides distasonis ATCC 8503] Length = 572 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 20/213 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 S I H++ +PI AI SLELL++ E + S I + ++++ Sbjct: 357 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 416 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124 +G + + ++I+ I + +++V + + L + KI + Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 476 Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179 A G++ I + +K G R+ E + + Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + E Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569 >gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1425 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + +M + + + + H++ +PI +H LELL + D+ L+R S Sbjct: 814 LREARAYAEQAMQVRSRFLATMSHELRTPISGMHGMLELLQMSELNDDQRYLLRNVVTST 873 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + SV + G + V Sbjct: 874 NNLLYLVNDVLDFSKIEAGQLQLHYQDCRLASVICDVIRGHATLAHGKGLKVTLEWAPEV 933 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++L NL A RG + + I + G +K Sbjct: 934 PDQARIDAVRVGQVLSNLLNNAVKFTERGEIRIQVSFEKERLAIA-VSDTGIGI-AEDKQ 991 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + LA + L+ E H L+ Sbjct: 992 DRLFTPFEQVESDITRRFGGTGLGLAICHQLAQKMGGTLVLESKPGHGTRLTFDFP 1047 >gi|110803031|ref|YP_699592.1| sensor protein yycg [Clostridium perfringens SM101] gi|110683532|gb|ABG86902.1| sensor histidine kinase [Clostridium perfringens SM101] Length = 473 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 17/223 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60 ++ L I H++ +P+ I + LE + E +L+ + + Sbjct: 248 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIYGIWEPTEERLLSVKEEAERLSSLVSDM 307 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 K+ + ++ + +A K +++ + + I+L ++ + Sbjct: 308 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 367 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172 L+N+ A G + I + N+ I S++ G + F + + Sbjct: 368 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 427 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V + + + E + +L K Sbjct: 428 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 470 >gi|148260877|ref|YP_001235004.1| integral membrane sensor signal transduction histidine kinase [Acidiphilium cryptum JF-5] gi|146402558|gb|ABQ31085.1| integral membrane sensor signal transduction histidine kinase [Acidiphilium cryptum JF-5] Length = 549 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 76/245 (31%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSM--DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A+ + + ++ + A+ + + H+I +P+ +I +++E + +L + Sbjct: 305 LARALEESAHALWARMDAIERFAADVAHEIKNPLSSIRSAVETVRRTDDPARAARLFDII 364 Query: 57 SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + ++ VD L + ++ + D V V Sbjct: 365 SQDVRRLDRLISDISDSSRLDSEMSRTALEPVDLAPILAALAEIHQSTREDDAPVMVLDA 424 Query: 106 GEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++L NL A + P+ GK+ + + + + +++ G Sbjct: 425 PKTGLVVRGAEGRLVQVLRNLIGNAISFSPQRGKIWLRGRVTGSIVELAVEDEGPGIPDA 484 Query: 162 EKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLS 210 + + D + + ++ R+ E D Sbjct: 485 KL-DHVFDRFYSERPQGEGFGNHSGLGLSISRQIVEAHQGRITAENRRDPEGAVIGARFV 543 Query: 211 ALLEK 215 L + Sbjct: 544 IRLPR 548 >gi|302671731|ref|YP_003831691.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] gi|302396204|gb|ADL35109.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] Length = 268 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 66/244 (27%), Gaps = 29/244 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L+ I HD+ +P+ AI ++++ L++ + + + Sbjct: 24 LLEANARLQQAERERKLMLENISHDLRAPLTAIRSAIDYLNQKNTDCGLQSSGDEMTQML 83 Query: 61 IIRLKF-----------------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + ++L + Sbjct: 84 HLIDNRTRTLEVLISDLYYLTCIENGSDELKLQKVPLSQFLEEYFFAAQIDDKYSARNLI 143 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + + E + +++L NLF A G + + V D + F +K G Sbjct: 144 CEIPDDYDAEVNVDVGKMSRVLDNLFTNARKYSENGADIVLGVLDEGQLSTFYVKDTGKG 203 Query: 158 ARF---PEKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 F + + T D + V + ++ R+ E Sbjct: 204 IPEEALDHIFERTYRVSGARTPDGESSSGLGLSIVKGIVTQHGGRIWCESKLGKGSCFYV 263 Query: 212 LLEK 215 L K Sbjct: 264 ELPK 267 >gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CMR15] Length = 676 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL ++ + + + + Sbjct: 288 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 345 Query: 62 I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + ++ +G V I + + + + +A K++ V Sbjct: 346 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQITVDTEYLPVP 405 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG V I+VQ + + +++ G P Sbjct: 406 LLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVATVRDTGIGIEPTFLPHV 465 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + L + R+ D ++ L Sbjct: 466 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADLGTTMAVTLP 519 >gi|295694967|ref|YP_003588205.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295410569|gb|ADG05061.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 371 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 +A+ + S + + I H++ +P+ + + LE + ++ ++ Sbjct: 130 LAEALARQEDSRK---TMTADIAHELRTPLATLKSHLEAFLDGVWEPDEARLRGCYEEIE 186 Query: 59 SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGE 107 I ++ + V+ LG + D ++ + Sbjct: 187 RLIRLVRDVEALAELEAPGFRLQPTRVNLCDVLGRAVALYRPSYFQKGVDLAMECAGPVW 246 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 +++ NL A + P+ GKVT+S + + + ++ G E F Sbjct: 247 AEADPERLTQVVTNLLSNALKATPQEGKVTVSAETAGVWRVIRIQDTGRGIPPQELAKVF 306 Query: 165 TQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V L + R+ ++ L Sbjct: 307 ERFYQVGQRRSRDGGAGIGLTIVKRLVEAHGGRVQIHSELGKGTMVRVDLP 357 >gi|225569041|ref|ZP_03778066.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM 15053] gi|225161840|gb|EEG74459.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM 15053] Length = 475 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 62/232 (26%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 + + + + + I HD +P+ I L+ + + + ++ Sbjct: 237 QERTKVEMEREHMKSSMLRSISHDFRTPLTGILGDCSLIIDSKEMGREEEKQLLKDIMEQ 296 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------E 107 S + + + + +G I+ VI + Sbjct: 297 SMWLMKMVVNILNMTKIESGQQFVEKSGEVIDDVINGAERHVIGLGQRDYHVVLPKQVIM 356 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L+N+ A GGK+ ++ + S++ +G + Sbjct: 357 AQMDGKMIMQVLVNILDNAVKHTQEGGKIILTASFRRKRLYVSIEDDGPGIEEGMEEKIF 416 Query: 168 VD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G + + + + E + + L Sbjct: 417 DEFVSLSGESMDQKRGIGLGLAICRQVVSAHGGEIWAENRSEGGARFTFWLP 468 >gi|209525937|ref|ZP_03274471.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209493614|gb|EDZ93935.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 368 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57 N+ L + L S HD+ +P+ +I S +LL + + + Q I+ S Sbjct: 134 NLFQELEAEK--TRLLSIASHDLKNPLTSIQMSTDLLAKYDSKLDEQKKLKHFQRIQSSI 191 Query: 58 MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWT 105 S V+ + + + + + ++++ Sbjct: 192 NSMNQLLEDVLTLSKSSSGKLTFAPKLVNVVKLIQLLIDQLMVQVNDQHKLELRTSGDLD 251 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162 + + IL NL A P GG + V +N+ IF +K G + Sbjct: 252 DPIMLDDKLLGHILANLLSNAIKYSPDGGVINFDVIRQENQIIFRIKDAGIGLPPEYKQK 311 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F G+ I + V + + + + +L Sbjct: 312 LFQAFERGSNVGNIKGTGLGLSIVKQAVDLHGGEITVDSELGQGTTFTVILP 363 >gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112] Length = 927 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 543 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 544 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663 Query: 208 VLSALLE 214 ++ L Sbjct: 664 TVTVALP 670 >gi|158319898|ref|YP_001512405.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158140097|gb|ABW18409.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 446 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 +NI + + + L I HD+ +P+ I + ++ E + +L+ + Sbjct: 208 RENIRIAMEREKMRSNLLRAISHDLKTPLTGIVGASGVILENLTKLDNCNIKKLVCDINE 267 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114 A + T + + + +V++D + R +++ K Sbjct: 268 EATWLSNLVENILNMTRISEGKLMIEKNYEVVDDIVYEAIRHVKNFSNTKNISVSMPEEV 327 Query: 115 ---------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L+NL A K+ I+V + +F + NG+ Sbjct: 328 VMVFIDGKLMVQVLINLLDNAMKHTGDDCKIQITVYVHNDSAVFEVSDNGSGIDNN-IED 386 Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D V S++ + + ++ + + + L Sbjct: 387 SLFDSFVTSSVKTIDGKRGMGLGLSICKSIIEAHQGTITAGRSKEGGALFRFTLP 441 >gi|119383347|ref|YP_914403.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans PD1222] gi|119373114|gb|ABL68707.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans PD1222] Length = 680 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62 + S + A+ L I HD + + AI +LL D+ + + I ++ A Sbjct: 298 VQSQKMQAIGQLAGGIAHDFNNLLTAITGHCDLLMLRHDKADPDYADLDQISQNANRAAA 357 Query: 63 RLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 ++ + +D L ++ ++ + + + +R ++ Sbjct: 358 LVRQLLAFSRKQTLKLQIMDLRDTLSELTHLLNRLVGERIVLTFDHDPALRMVHADRRQL 417 Query: 119 LLNLFM---VAHASLPRGGKVTISVQDS---------------KNENIFSLKINGNLARF 160 + A ++P GG +TI + + ++ G Sbjct: 418 EQVIMNLVVNARDAMPEGGDITICTDNVRLETRAELGRAVLPAGDYVRVQVRDQGCGIAP 477 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + + + + + + S Sbjct: 478 DDL-AKIFEPFFTTKRTGEGTGLGLSTAYGIVKQTGGYIFCDSTPGEGSCFSLFFP 532 >gi|325104528|ref|YP_004274182.1| multi-sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] gi|324973376|gb|ADY52360.1| multi-sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] Length = 675 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 21/227 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 NL + +A L S H++ +P+ +I L++L + E+ L ++ + +L Sbjct: 446 KSLNLKKDEFIA-LAS---HELKTPLTSIKGYLQILSRSTHDKEMSDLFVNKALIQVGKL 501 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQV-----------IEDFIAVDKRVQVSWTGEKIDLSR 113 + + +++ +IE + + + ++ + + + Sbjct: 502 ESLVSDLLNVSKIEAGKLQFNIEILDLRQLVLESIENFSYTSRSHKINLDDIKSPVIIEG 561 Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI 167 ++ ++++NL A P+ KV + + +N I S+K G FT+ Sbjct: 562 DKQRLEQVIINLLSNAVKYSPKSDKVDVFLSSDENNAIVSIKDTGLGLSNESQKNIFTRF 621 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + Y + + ++ E + L Sbjct: 622 YRAEGVSNISGLGLGLYLTKEIVERHHGKIEVESELGQGAEFTFTLP 668 >gi|307325426|ref|ZP_07604628.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306888895|gb|EFN19879.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 398 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 54/225 (24%), Gaps = 26/225 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 166 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 225 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 VD + Q + +R + G L + ++ Sbjct: 226 ISRIDSGRLEVRRQPVDLAAAVRRHVQALTAAGHTAERFLIRARGPLPRLWADPDKIDQV 285 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI---------FSLKINGNLARFPEKFTQIVD 169 L NL A + I+ + ++ G Sbjct: 286 LGNLLENAVRHGEGTVTIDIAPATPAKPVVEGPPVERTAVTVSDEGPGIPEESMSRVFTR 345 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + E +L Sbjct: 346 FWRGSKRGGTGLGLYIVKGIVEAHGGTITVERARGGGAEFRFILP 390 >gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1342 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69 I H+ +P+ I + LE+L E + + I +++ + + + Sbjct: 829 NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 888 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124 + S + + + A K++ + + + K++ NL Sbjct: 889 FEKFKYSKQDIYSFLEEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 948 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181 A P GG V++SVQ+ +N + + G + F + + I Sbjct: 949 NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 1008 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K ++ + L Sbjct: 1009 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1041 >gi|260223179|emb|CBA33482.1| hypothetical protein Csp_B19280 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 450 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIR 54 + + + DL + + H+ +P+ IH S++LL V +++ Sbjct: 205 KRALQQQIELNDLKSRFITMASHEFRTPLATIHGSVDLLMHYDDRMPVDKKRLTLLKIDD 264 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----------EDFIAVDKRVQVSW 104 + + + G + + ++ + Sbjct: 265 AVERMTHMLENVLVIGRSDAGRLQFKPQPSQVAVFCKSLVDELRSAMAEPFRRIQMAMDL 324 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-- 159 + + I + A P GG+VT+ V+ E + ++ G Sbjct: 325 PRDTDAYLVDEVLIRNIVGNLLSNAIKYSPHGGQVTLRVRPRPGELVITVSDQGIGIPLA 384 Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P+ F + I + V + + + + +L Sbjct: 385 DQPQLFESFHRASNVGNISGTGLGLAIVRDAVQCHGGSISLQSTPGEGSTFTVVL 439 >gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1353 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I ++V+ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + ++ + + + ++ + E Sbjct: 875 ITELLDFRKQEQGHMKIKTSKHNLVEFLYENYLLFLEYASSKQINFNFIKQTDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A +TI V ++ I +K G+ E Sbjct: 935 QKQMQKVINNLLSNALKHTKAEDTITIKVSQEQDHAIIEIKDTGSGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +D I + + + E L+ Sbjct: 995 QTEHLDSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043 >gi|225027391|ref|ZP_03716583.1| hypothetical protein EUBHAL_01647 [Eubacterium hallii DSM 3353] gi|224955288|gb|EEG36497.1| hypothetical protein EUBHAL_01647 [Eubacterium hallii DSM 3353] Length = 347 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341 >gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 418 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 24/236 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 KN+ + + + I H++ +P+ AI +LL + Q I + Sbjct: 178 KNLQLQ-EASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLTDQQIDIIQRIFNN 236 Query: 63 -------RLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + G +D I +E++ + + + V Sbjct: 237 SQNLLTLINEVLDFSKLEIGQMDLNIGKFDLDILVRFTVEELSSLTLNKNLSLNVDIHLA 296 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ +IL+NL A P G + + +++ G Sbjct: 297 NNQVINDKNFLKRILINLLSNAIKFTPAGEIWVKVWEMNPERIAITIEDTGVGIAPEHLK 356 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T + + V L + + + V + + Sbjct: 357 TIFTPFHQVDQTLTRQHLGTGLGLAIVYSLVKMMQGEIHVTSQLEQGSVFRVEIPR 412 >gi|153813052|ref|ZP_01965720.1| hypothetical protein RUMOBE_03460 [Ruminococcus obeum ATCC 29174] gi|160894162|ref|ZP_02074940.1| hypothetical protein CLOL250_01716 [Clostridium sp. L2-50] gi|149830854|gb|EDM85944.1| hypothetical protein RUMOBE_03460 [Ruminococcus obeum ATCC 29174] gi|156864195|gb|EDO57626.1| hypothetical protein CLOL250_01716 [Clostridium sp. L2-50] Length = 347 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341 >gi|153854282|ref|ZP_01995581.1| hypothetical protein DORLON_01576 [Dorea longicatena DSM 13814] gi|149753057|gb|EDM62988.1| hypothetical protein DORLON_01576 [Dorea longicatena DSM 13814] Length = 347 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341 >gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 905 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 62/237 (26%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56 +++ + + S I H++ +P+ AI+ SL LLD + +++ + R + Sbjct: 667 RDVTERAEAERIKDEFISTISHELRTPLTAINGSLALLDAKVAMAAPDKQAQMIGIARRN 726 Query: 57 SMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS 103 + + + + D+ + + ++ Sbjct: 727 TDRLLNLVNAILDLKKMASGEMTLQLSHFNLAQLVSDVLALNQGLAHNADVSFSLQIPSD 786 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L NL A P ++ +SV + S+ G Sbjct: 787 CVIVVEADEERLTQVLTNLISNAAKFSPPHTEIVVSVTLEDSIARVSVTDKGPGVPPEFL 846 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + ++ L Sbjct: 847 N-RIFGRFAQADSSNTRNKSGTGLGLNISKAIIERHGGKIGFHNNPGGGCTFYFELP 902 >gi|120556580|ref|YP_960931.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120326429|gb|ABM20744.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 966 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/214 (10%), Positives = 56/214 (26%), Gaps = 21/214 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------------F 66 + H+I +P+ AI +L+ + +++ + + + SA L Sbjct: 413 NMSHEIRTPMNAIIGFTDLVLDTPLDETQARHLGVVKTSARSLLNLLNDILDTAKLDGGH 472 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 L + + + + + +++LNL A Sbjct: 473 TELELHDFNLRRLCDQVIATQSLNAARKGLYLTLDYQAGEYYQGDPLRIQQVVLNLLSNA 532 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHD 180 GG + S ++ + ++ G ++ +I + + Sbjct: 533 VKFTQTGGVTLKVQEPSVHKVVIRVEDTGIGI-SADRIDRIFEPFTQADSSMTRRFGGTG 591 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + V L Sbjct: 592 LGTTIARQLVELMGGTISVTSSPGEGSVFQVELP 625 >gi|298506844|gb|ADI85567.1| sensor histidine kinase response regulator, PAS and PAC domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 882 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 33/242 (13%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L + L +L L I HD + + AI + +L L+ + + I ++ Sbjct: 500 EKQLLHAQKLESLGVLAGGIAHDFNNILTAIVGNTDLALMRLNPESPVRDNLARIERAAN 559 Query: 59 SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A K M +D + ++ +++ I+ ++ ++ + + Sbjct: 560 RASDLAKQMLAYSGKGKFVIEPIDLNRLVEEMTHMLQVSISKKAVLRFNFADSLPTVDAD 619 Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152 ++ + + + + Sbjct: 620 ATQLRQIIMNLVINASEAIADKSGVIAISTGCMQCDRKYLSNAWLNESIPEGLYVWLEVA 679 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E ++I D + + V+ + +K + L Sbjct: 680 DTGCGM-DRETVSKIFDPFFTTKFTGRGLGMAAVLGIVRGHKGAIRVYSEPGRGTTFKVL 738 Query: 213 LE 214 L Sbjct: 739 LP 740 >gi|295095446|emb|CBK84536.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./HAMP domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 765 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + M V L + HD + + I SLEL D + + ++ Sbjct: 390 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTDSASPDAPRITRALKAAERGAM 449 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R +V+ L ++ +++ + + + + +++ Sbjct: 450 LTQRLLAFSRKQSLQPHAVEMKPLLENLSELMRHSLPATLTLDIEAQTPAWPAWIDVSQL 509 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G E + Sbjct: 510 ENAIINLVMNARDAMEGQNGVIKIRTWNQRVTRSDGRRQDMVALEVIDHGCGM-SQEVKS 568 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 569 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 620 >gi|226304477|ref|YP_002764435.1| two-component histidine kinase PhoR [Rhodococcus erythropolis PR4] gi|226183592|dbj|BAH31696.1| two-component histidine kinase PhoR [Rhodococcus erythropolis PR4] Length = 483 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 62/232 (26%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59 A S + H++ +P+ I EL + + D M I + Sbjct: 248 ASEESARRSEEKMR-RFVGDASHELRTPLTTIRGFAELYRQGAMTDTETLMNRIEGEASR 306 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110 + ++ + + D+ V D + + + T E Sbjct: 307 MGLLVEDLLMLARLDEQRPLENKPVDLLAVAADSVQAARAIAPDRTVELQMTGGPGLPEV 366 Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 +++ NL A P +VT+ V ++N + + G + F Sbjct: 367 QGDEARLRQVVANLVGNAIKHTPPDAQVTVRVGTTENSAVVEVSDTGQGLSDEDAARIFE 426 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V L + + E L + Sbjct: 427 RFYRADTSRTRETGGAGLGLSIVSALVAAHDGTVSVETSLGQGTTFRVELPR 478 >gi|218671082|ref|ZP_03520753.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli GR56] Length = 330 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 72/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + L+ + Sbjct: 83 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 142 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 143 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 202 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151 + ++L+NL + A ++P GG S +++ + + Sbjct: 203 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 262 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE +I + + + V + ++ + PE Sbjct: 263 TDTGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 321 Query: 210 SALLEK 215 L + Sbjct: 322 RVFLPR 327 >gi|94267839|ref|ZP_01291005.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451836|gb|EAT02580.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 262 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDL----VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 KN S +L L + HD+ P+ ++ ++LL+ + + + Sbjct: 13 RKNRQLEEKSAELTRSNAELEQFAYVVSHDLRQPLRMVNGYMQLLERALDDKLDDETREM 72 Query: 56 SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + + + L E V E ++ + + K Sbjct: 73 MGFAVGGAQRMDHMLVSLLDYSRVGRRGEPMAPLASREAVAEALHFLEPEINQTGATVKR 132 Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR 159 E ++ NL A K I V N F++ NG Sbjct: 133 SGDWPEIVASRDEFTRLWQNLIGNALKYRDPQRKPEIELSVSPEANGWRFTVADNGIGID 192 Query: 160 FPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + F ++ D I + + R+ E L Sbjct: 193 PGQ-FDRLFKVFQRLHPKDQYDGTGIGLAVCRKIVERHGGRIWVESEGAGQGSRFIFTLP 251 Query: 215 K 215 + Sbjct: 252 R 252 >gi|42780488|ref|NP_977735.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42736407|gb|AAS40343.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 466 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + ++++ + ++K G + + Sbjct: 364 NAIRYTNQNGDIIVTLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458 >gi|225175360|ref|ZP_03729355.1| signal transduction histidine kinase, nitrogen specific, NtrB [Dethiobacter alkaliphilus AHT 1] gi|225169112|gb|EEG77911.1| signal transduction histidine kinase, nitrogen specific, NtrB [Dethiobacter alkaliphilus AHT 1] Length = 862 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + ++ V+ L I HD + + I +L L E+ + Sbjct: 485 QEEMLRSNKLESVSTLAGGIAHDFNNLLTVILGNLSLAKLYADENNKVMAKICEIEKAAK 544 Query: 59 ----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSR 113 L + + + + + + V + Sbjct: 545 NAQGLTKRLLTISKGGAPIKKVTNLGPLIREWAEFVLSGSNVACDYDLPHDLHPVEIDQG 604 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNLAR 159 + + + NL + A ++P GG +++ + S + G Sbjct: 605 QLNQAINNLLLNAKEAMPNGGSISVKACNVTFSGEGIHSKKLAEGKYLRISFQDQGKGIP 664 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + + + + + D V + L Sbjct: 665 PT-IIDRVFDPFFTTKPEGSGLGLFTAYSIIKHHNGTIEVTSEIDAGTVFTIHLP 718 >gi|225571267|ref|ZP_03780263.1| hypothetical protein CLOHYLEM_07364 [Clostridium hylemonae DSM 15053] gi|225159743|gb|EEG72362.1| hypothetical protein CLOHYLEM_07364 [Clostridium hylemonae DSM 15053] Length = 397 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIR 54 + + L ++ L+ + H++ +P+ I +SL++L+ + + + + Sbjct: 158 LNEAFNDMLERLEDAFLIQKSFAANAAHELKTPLAVIKSSLQVLEMTPNPEQKDYEEFME 217 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------VQVS 103 + S +K + + + + + + Sbjct: 218 NTGKSLDRIIKTVDGLLSLANLTEVPVDQDIELSSLLRQAVQEMSGSAEKTDVEIVLTCE 277 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + NL A GGKV I++ + + +G Sbjct: 278 NDISVHGNPDLLYRAVFNLIENAVKYNIPGGKVLITLTADEQSASIRVSDSGIGIPTEAL 337 Query: 164 FTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + I + + V ++A + ++ E + + LL Sbjct: 338 GHIFEPFYRADPSRSQKIPGYGLGLATVKMIADRHGGQISVESTEGSGTAFTLLL 392 >gi|254410345|ref|ZP_05024124.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182551|gb|EDX77536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 526 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 K + +L + + + I H+ +P+ I S ELL + + I++ Sbjct: 282 RKALTTEQELSELKSRVVAMISHEYRTPLAVILTSTELLKRYSTQLSQEKQQTYLDRIQM 341 Query: 56 SSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ + + ++ V E + V R +++ + Sbjct: 342 GVKQMAQLVEEVLTFNKAQAGELQFNPEPLNMEDFCLQLVDEQRLMVGDRYTLTYNPQLS 401 Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + I+ NL A +G V++S++ + I ++ G E+ Sbjct: 402 SGEAELDKQMLRHIVTNLLSNAIKYSAKGTTVSLSLRREDDTLIIQVQDQGIGIPESEQP 461 Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V ++ ++ ++ L Sbjct: 462 RLFSPFFRASNVSTIAGTGMGLSIVKNCVDLHQGQIAIASEVGKGTTVTVTLP 514 >gi|254412795|ref|ZP_05026568.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180530|gb|EDX75521.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 797 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 53/222 (23%), Gaps = 20/222 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR 63 ++ A + S HD+ P+ I + +LL D+ + I S + Sbjct: 577 QELEQFAYVAS---HDLREPLRKIRSYSDLLVKRYQGQLDERADKYIGYITDSVIRMQAL 633 Query: 64 LKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + + I + + + + S + Sbjct: 634 ITDLLTYSRVSRNELVLEPTDLGEILQQTLTDLSPAIEENQAIINTTHLPIVQANSLQIG 693 Query: 117 KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV 172 ++L NL A + S++ NG F + Sbjct: 694 QVLQNLIANAIKFRREQPPQIDIKADCQDDFWQISIQDNGIGIDPSYSDRIFAIFQRLHY 753 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ E L Sbjct: 754 REEYPGTGIGLAICQKIVERHGGKIWVESELGQGSTFYFTLP 795 >gi|325972395|ref|YP_004248586.1| multi-sensor signal transduction histidine kinase [Spirochaeta sp. Buddy] gi|324027633|gb|ADY14392.1| multi-sensor signal transduction histidine kinase [Spirochaeta sp. Buddy] Length = 1041 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 68/222 (30%), Gaps = 17/222 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAI 61 + + + + L + I H++ +P+ I + E +L E+ ++ + ++ + Sbjct: 591 QEELVRTEKMAGIGTLAAGIAHELNNPLAGIVGTAEIMLSELEEKNPHFEYVQDILTYSK 650 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------ 115 ++ Y+ + + +F + ++ + Sbjct: 651 TASDVIKELSIYSRKEEVKQTQQVELVRVLEFSLRLALRGIDSLNIHVERNYHALPSIEA 710 Query: 116 -----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ LNL + A S+ GK+T+S + + G +QI Sbjct: 711 NEGELQQLFLNLIVNAIQSMDGNGKLTLSCIEKDGFVQVKVGDTGCGIPEKH-MSQIFTP 769 Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + + R+ + + + Sbjct: 770 FFTTKAPGSGTGLGLSNCYNIVEKMGGRIRVKSEEQVGSEFT 811 >gi|308172234|ref|YP_003918939.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307605098|emb|CBI41469.1| two-component sensor histidine kinase [YclJ] [Bacillus amyloliquefaciens DSM 7] gi|328552044|gb|AEB22536.1| two-component sensor histidine kinase (YclJ) [Bacillus amyloliquefaciens TA208] gi|328910308|gb|AEB61904.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 474 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MA N+ + + + H++ +P+ I+ +E L+ +++ L Sbjct: 231 MAHNLKQSREQIDRLEKRRRQFIADVSHELRTPLTTINGLVEGLNSNTIPEKDKEKCFSL 290 Query: 53 IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + + +K ++ + + + R+Q Sbjct: 291 ISEETKRMLRLVKENLDYEKIRSQQIKLDKLSLPLIEVFEIIKEHLNQQAEEKQNRLRIQ 350 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V + +IL+N+ + G + K ++ G Sbjct: 351 VEAGVKVFADYDRLIQILVNITKNSIQFTQNGDITLRGYEGYKETI-IEIEDTGIGISKE 409 Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + +V + + V L +K + + L Sbjct: 410 EIEHIWERFYKADVSRTNTAYGEYGLGLSIVKQLVELHKGTIDINSEKGQGTTFTIRLP 468 >gi|302344236|ref|YP_003808765.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640849|gb|ADK86171.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 975 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 31/238 (13%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDE-------VGIEDEVMQLIRLS 56 + + + A+ + + HD + +GAI E+ L + +++++ Sbjct: 590 QLMQARKMEAIGVMAGGVAHDFNNILGAILGYAEMALQDAKTKRANPADLEQIVKAGERG 649 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 L F R +D + Q++E I +++ ++ + Sbjct: 650 KQLVRQILTFSRKVEVDLRPLDLNQAVSQAAQLLEKTIPRMIGLELELIRRLRPINADAN 709 Query: 117 KILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLA 158 ++ L A ++P + S S+ G Sbjct: 710 QLEQILLNLGVNAADAMPDGGLLRIRTENVVVENRSCLACGRTFSGQYVSLSVSDTGQGM 769 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + + + Sbjct: 770 DRQTI-ERIFEPFFTTKPKGKGTGLGLATVYGIVLGHGGHIDCHSELGQGTTFTVFFP 826 >gi|229107946|ref|ZP_04237574.1| hypothetical protein bcere0018_2400 [Bacillus cereus Rock1-15] gi|228675508|gb|EEL30724.1| hypothetical protein bcere0018_2400 [Bacillus cereus Rock1-15] Length = 314 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 72 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELNFSEVTREVLIEFLPELSKHNIELQIRIPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ E + G + Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308 >gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 940 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 54/240 (22%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 D+ + + + H+I +PI I L+LL + E + + +S Sbjct: 470 EQKVATQQADVANKAKSEFLANMSHEIRTPINGIMGILQLLQSTELSPEQQEYTNMGIVS 529 Query: 60 AIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 A + + L L D + + +K + + +T + Sbjct: 530 ASRLTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSVDELFMVTSREKDISLEFTQDPC 589 Query: 110 DLSR------ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLAR 159 +I+ NL A G + ++ G Sbjct: 590 LPQVLLGDEARLQQIVFNLVGNALKFTQEGRISVNWHLQQRRGRDARVLLTVSDTGIGMT 649 Query: 160 FPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L L + L Sbjct: 650 DDTLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLAVDSTPGQGSTFFVSLP 709 >gi|218780773|ref|YP_002432091.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762157|gb|ACL04623.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 571 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 61/223 (27%), Gaps = 21/223 (9%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDE--------------VGIEDEVMQLIRLS 56 L +L L + + H+I +P+ I+ LL++ I ++ + Sbjct: 344 KLASLGRLAAGVAHEINNPLAIINEKAGLLEDLIHLTPDFPQKEKAHEIVQSILGSVDRC 403 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S L F R ++ + ++ + ++ + V++ + +R Sbjct: 404 STITHRLLGFARHIDVNFETIYLDNLVKNVLGFLEKESHYREIEVKLEVEENLPAIESDR 463 Query: 116 AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ + + + G ++ ++ NG Sbjct: 464 GQLQQVFLNILNNAFAAVEDGGKIEIHINSVGDDQVAVRIEDNGCGMPPEHMKLIFEPFF 523 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + K + + + L Sbjct: 524 STKGRKGTGLGLSITYGIIKKLKGSIEVDSQEGIGTTFVVTLP 566 >gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 660 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + K S L + + + H+I +P+ AI +LL ++ ++E +Q+I ++ Sbjct: 280 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 339 Query: 58 MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +V + + + + V T Sbjct: 340 ELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 399 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+IL N A +G + + ++ G +K Sbjct: 400 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIE-MGYEKIDENIRLYVRDTGIGI-PEDKKD 457 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E D + A+L Sbjct: 458 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508 >gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 466 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 16/213 (7%), Positives = 63/213 (29%), Gaps = 21/213 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMR------- 68 + H++ +P+ + E + E ++ +++I + + + Sbjct: 245 NVSHELRTPLSYMRGYTEAMLEGMTTSGEEREKYLRIIHNETARLTRLVNDLLDLAQLEG 304 Query: 69 ----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + ++ + + + + + +Q+ + +++ NL Sbjct: 305 ESYPMRKEPIPFAQLVMDVTERFKFHAEQKHIHLGLQLDEEVIIEGDADRLEQVISNLLD 364 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV--DGNVESTIDSH 179 A P G+V + ++ + + + ++K G + + Sbjct: 365 NAIRYTPEAGEVMMELKQNDHLAVLTVKDTGCGIPEEDLENIMDRFYRVHKPRTRNEGGF 424 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + V + ++ + + +S Sbjct: 425 GLGLAIVKQIVWKHGGTIDVQSQPGKGTSISLT 457 >gi|172062325|ref|YP_001809976.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171994842|gb|ACB65760.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1032 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 25/227 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------- 63 + + + H+I +P+ AI +LEL++ + + + + S+ Sbjct: 520 KAKSTFLATMSHEIRTPLNAIIGNLELMERAQMAVPLRRRLGTIMSSSDALLRVINDVLD 579 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERA 116 + D + D+ + R+ + S Sbjct: 580 LSKAESNQMVLESIPFDLRRVVNDVAAIFRPLADAKNLALTCRIAPDLANGYVGDSTRLR 639 Query: 117 KILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +++ NL A RGG + ++ G T Sbjct: 640 QLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRGVEIAVSDTGIGIPEDSLPTLFDVYVQ 699 Query: 173 E-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + A L Sbjct: 700 TDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTIFVAALP 746 >gi|116626893|ref|YP_829049.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116230055|gb|ABJ88764.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 551 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 62/240 (25%), Gaps = 31/240 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS---M 58 + S + A+ L + HD + + I E+L E + ++ Sbjct: 170 EAQLIQSQKMEAIGRLAGGVAHDFNNLLTVILGYTEMLREHLEEDAVALEFGDEIHLAAH 229 Query: 59 SAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 A + D + + + + I + + Sbjct: 230 RASDLTNQLLAFSRRQMSIPRVVSLNDVVNQIEKMLRRIIGEDIRLETLLTDSIQPVKVD 289 Query: 112 SRERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156 ++++NL + A ++P GG + ++ + ++ G Sbjct: 290 PTHIQQVIMNLAVNARDAMPTGGTLIIETANVELSAEYAGRHIGVEAGPYTLLAVSDTGT 349 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + ++ +L H L Sbjct: 350 GM-DDATKARLFEPFFTTKEQGKGTGLGLSIVYGIIKQSGGEILVYSEPGHGTAFKIYLP 408 >gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%) Query: 2 AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 + + + +L + + + H+I +P+ + LL + E + Sbjct: 143 RRLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202 Query: 52 LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 +++ S + + + L Q +A Sbjct: 203 YVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149 + + S ++LLNL A G F Sbjct: 263 LTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSCHF 322 Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++K +G + F + + + L + E Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382 Query: 205 HNVVLSALLE 214 + Sbjct: 383 KGSTFWFTVP 392 >gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%) Query: 2 AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 + + + +L + + + H+I +P+ + LL + E + Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202 Query: 52 LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 +++ S + + + L Q +A Sbjct: 203 YVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149 + + S ++LLNL A G F Sbjct: 263 LTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSCHF 322 Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++K +G + F + + + L + E Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382 Query: 205 HNVVLSALLE 214 + Sbjct: 383 KGSTFWFTVP 392 >gi|90420924|ref|ZP_01228829.1| histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334899|gb|EAS48671.1| histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 845 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 66/236 (27%), Gaps = 31/236 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S + A+ L I HD + + I S++ L + + LI+ S+ A Sbjct: 464 KSQKMQAIGNLAGGIAHDFNNVLTIITASVDFLLLNHRTGDPSFQDLLLIKQSANRAASL 523 Query: 64 LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 ++ + + D + + + + + A +R + + Sbjct: 524 VRQLLAYSRRQTMRPKMLNLTDVVADMHLLLKRVSGDHAKLERHHARDLWPVMADIGQFE 583 Query: 117 KILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161 +++ NL A ++P + + + + G Sbjct: 584 QVITNLVQNARDAMPDGGTITISTRNVEAAEAAAFGYAEMTEGDYVLAEISDTGTGMPV- 642 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I + + + V + ++ + + L + Sbjct: 643 EVAERIFEPFFTTKDIGKGTGLGLSMVYGIVKQSGGFIFVDTKPGEGTTFRIFLPR 698 >gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 456 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 25/235 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLI 53 L+ + L + HD+ +P+G ++ ++LL + + + + Sbjct: 212 ERLMELNDLKNRFLGVA--AHDLRNPLGVLNGYIDLLRQEALGPLNEAQQEVMGVMADVA 269 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEK 108 S L + G + L Q R+ + Sbjct: 270 ERMSALVEDLLDVSAIESGQLELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPL 329 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ + ++L NL A PR +T+ + S+ G E+ Sbjct: 330 PTVAVDSRRLGQVLDNLIANAVKFSPRDSTITLGGRADDQSVRISVSDQGPGIPAEERAQ 389 Query: 166 -----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + S + V L + ++ + + L + Sbjct: 390 LFQPFRRGSNAPTADEKSTGLGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPR 444 >gi|293603774|ref|ZP_06686191.1| sensor histidine kinase KdpD [Achromobacter piechaudii ATCC 43553] gi|292817843|gb|EFF76907.1| sensor histidine kinase KdpD [Achromobacter piechaudii ATCC 43553] Length = 928 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56 A+ ++ S L L + + HD+ +P+ ++ + L + ++ +R Sbjct: 684 AQQALVSMESERLRNSLLAAVSHDLRTPLTSLIGMTDTLTRQQATLAPDVQDTVRAMREQ 743 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------- 108 + + + L + + R +S Sbjct: 744 AQRMHALVVNLLDMARLQSRDTPLRLEWQSIEELVGASLAAMREPLSAHHVTVGSLSQLP 803 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 ++L NL A P G + + +E ++ NG Sbjct: 804 LVECDGVLIERVLCNLLENAAKYTPAGSTLHLHAAVHDDELRVAVSDNGPGVAPGAERRI 863 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214 F + G ES + + + R+ E L Sbjct: 864 FEKFTRGERESATPGVGLGLAVCEAIISAHHGRIWVEHTPGQASGAQFVFSLP 916 >gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 785 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 18/221 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65 S L + + + H+I +P+ AI +LL +E + + ++ I L+ Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPSAETAEEKKLYSGIINQNSDILLQLIND 479 Query: 66 ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKEGVTLVFDNEEEDLLMEGDQNRI 539 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173 +++ N A G++ + + +K G PEK I + V Sbjct: 540 MQVITNFLTNASKFT-YEGEIRLGFGRMDKDIRVYVKDTGIGI-EPEKVDHIFERFVKLN 597 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + ++ + + + Sbjct: 598 SFAQGTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP 638 >gi|322421355|ref|YP_004200578.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127742|gb|ADW15302.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 743 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 73/241 (30%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 M++ I + M+ V +L I HD + + + +EL L++ ++ + + Sbjct: 465 MSEQIRQS-QKMESVGVLAGGIAHDFNNLLTGMMGFVELAQMKLNKDDQAQVFLEQVLSA 523 Query: 57 SMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + A + F R + V+ + ++ +++ + + + EK+ + Sbjct: 524 AERAASLTRGLLAFSRKQINHPQPVNLNQIVDNLRKLLSPLVIPQVGLIIDLYREKLPVV 583 Query: 113 RER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154 + +++ NL A ++P S+ Sbjct: 584 ADSSQLDQLITNLVTNARDAMPEGGELTIRTGLMEMTEEWVDAHGYGAVGGYAKMSVTDT 643 Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G K + + + V + +++ L + + L Sbjct: 644 GAGMDEATKAHILEPFFTTKEVGKGSGLGLAIVYGIVKQHEGYLEIDSKPGVGTTFNVYL 703 Query: 214 E 214 Sbjct: 704 P 704 >gi|291302593|ref|YP_003513871.1| histidine kinase [Stackebrandtia nassauensis DSM 44728] gi|290571813|gb|ADD44778.1| histidine kinase [Stackebrandtia nassauensis DSM 44728] Length = 496 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 55/232 (23%), Gaps = 21/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------EDEVMQL 52 K+ L S + + + H++ +P+ + EL + + Sbjct: 245 EKSEKRALESEERMRRFVADASHELRTPLTTVRGFAELYRQRADVDPVEVAGLMRRIEDE 304 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L RL + L + + + + Sbjct: 305 ATRMGLLVEDLLLLARLDAERPFRDAQVDLLTISVDTVTAAEVTAHGRHIELSTQGGPFL 364 Query: 113 RER-----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL A P ++ + ++ + +G E+ ++ Sbjct: 365 VRGDELSLRQVLSNLVSNALRYTPPESQIEVRLRSDDTHVELEVVDDGPGM-TEEQVERV 423 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + V L + + + L Sbjct: 424 FERFYRADKARSRNAGGTGLGLAIVAALVDAHNGEVSVWSKPGEGAKFTVRL 475 >gi|291302970|ref|YP_003514248.1| histidine kinase [Stackebrandtia nassauensis DSM 44728] gi|290572190|gb|ADD45155.1| histidine kinase [Stackebrandtia nassauensis DSM 44728] Length = 857 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%) Query: 11 SMDLVA------LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAII 62 + DL A L + + H++ +PI A+ LE L + + + + Sbjct: 113 AADLAAADGQRRELVANVSHELRTPIAALQAMLENLADGVAKPSTQSLSAAVAQTERLGR 172 Query: 63 RLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + D + D +D V V Sbjct: 173 LVTELLDVSRLDAGDTPLRRTGFDVRSFVDDAIAEATFHSDIDTHVDVPEGLCGYADVER 232 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 +++ NL A GG V+++ + + + + G + F + G Sbjct: 233 LHQVMANLLANAVRHNRPGGTVSVTARHRDDCLLLEVADEGPGIAPADRARIFERFTRGE 292 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V+ L Sbjct: 293 RSTRDGGTGLGLAIARWIVELHGGGIEVTEASP-GAVIRVRLP 334 >gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1093 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 57/243 (23%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + + A + + H++ SP+ I ++L ++ Q Sbjct: 696 REQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLNPILGWAQMLKNYELDQPTTQKA 755 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + V + V + + Sbjct: 756 LCIIERNARLQAELIEDLLDVSRILRGKLNLNTTSVSLVVVIEAALETVRLAAQAKSIEL 815 Query: 114 ERA----------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +++ NL A P GG+V I ++ +K G Sbjct: 816 RTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPSGGQVEIELEQIHGGVEIRVKDTGKG 875 Query: 158 ARFPEK-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSA 211 + + D + + L + ++ E ++ Sbjct: 876 ITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHLVELHGGKIWAESLGENQGATFIV 935 Query: 212 LLE 214 L Sbjct: 936 NLP 938 >gi|160889853|ref|ZP_02070856.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492] gi|156860845|gb|EDO54276.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492] Length = 759 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDE 48 + + + S +L + L + H+I +P+ AI ++L E Sbjct: 519 LKDHEQELIESRELAEQAELKQSFLN-NMSHEIRTPLNAIVGFSDMLANEPEFSDEERQE 577 Query: 49 VMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + +I ++ + + + F L + ++ Sbjct: 578 FVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQPPLQF 637 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156 + + ++L N A+ G S E ++ G Sbjct: 638 LKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKEGSIQLGYCCPSGMSEVHLYVEDTGI 697 Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ S + +L+ + R+ + + +L Sbjct: 698 GIPHSEQKMIFERFYKRSEFSQGVGLGLSICVLIVEKMGGRIELRSEEGRGSRFTVVLP 756 >gi|148978826|ref|ZP_01815179.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] gi|145962137|gb|EDK27422.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] Length = 574 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 24/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + + + H++ +P+ AI ++ L + E ++ S S+ Sbjct: 199 ARKDAERANKAK--SEFLAMMSHELRTPLNAIIGLIDTLKSTQLTPEQQSILLNMSTSSE 256 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + + + + + Sbjct: 257 LLLAIISDVLDFSKIESGCFSLAPQWSNVRDTVTFVLSEQKKAADDKGLTLTISSDIPEG 316 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+IL NL A G V +S++ ++ +++ G + + Sbjct: 317 ELHYIDPSRLAQILFNLIGNAIKFTEH-GHVHVSIKYQQSSFYIAVEDTGIGISSQQLSS 375 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + R+ E L Sbjct: 376 LFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVQLP 429 >gi|158523278|ref|YP_001531148.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512104|gb|ABW69071.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1079 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 63/234 (26%), Gaps = 29/234 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDE-------VMQLIRLSSMSAI 61 M+ V L + HD + + I EL L + +D ++ R SS Sbjct: 704 QKMESVGRLAGGVAHDFNNMLNVILGYTELALQNMDKDDPLYNDLTEILDAARRSSDITR 763 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L F R ++D + + +++ I D + + ++ + A++ Sbjct: 764 QLLAFARRQTIAPRTIDLNETVEGMLKMLRRLIGEDIDLAWEPSSGLWLVNMDPAQVDQV 823 Query: 122 LFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L + + L + ++ +G Sbjct: 824 LANLLVNARDAIDGVGRVTIETDNAVLDEAYCADRPGFVPGEFVLLAVSDSGCGMDKN-T 882 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + +N+ + L + Sbjct: 883 MDNLFEPFFTTKTVGKGTGLGLATVYGIVRQNEGFITVHSEPGQGTTFKIYLPR 936 >gi|39997909|ref|NP_953860.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984854|gb|AAR36210.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 882 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 33/242 (13%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L + L +L L I HD + + AI + +L L+ + + I ++ Sbjct: 500 EKQLLHAQKLESLGVLAGGIAHDFNNILTAIVGNTDLALMRLNPESPVRDNLARIERAAN 559 Query: 59 SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A K M +D + ++ +++ I+ ++ ++ + + Sbjct: 560 RASDLAKQMLAYSGKGKFVIEPIDLNRLVEEMTHMLQVSISKKAVLRFNFADSLPTVDAD 619 Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152 ++ + + + + Sbjct: 620 ATQLRQIIMNLVINASEAIADKSGVIAISTGCMQCDRKYLSNAWLNESIPEGLYVWLEVA 679 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E ++I D + + V+ + +K + L Sbjct: 680 DTGCGM-DRETVSKIFDPFFTTKFTGRGLGMAAVLGIVRGHKGAIRVYSEPGRGTTFKVL 738 Query: 213 LE 214 L Sbjct: 739 LP 740 >gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 848 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 63/240 (26%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + S + + + H+I +P+ A+ E L + ++ V + + Sbjct: 356 LRQAKREAEESNRAKSEFLANMSHEIRTPLNAVLGLAERLSFITEPRERDEYVRMIKHSA 415 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104 I + L+ G +D ++ ++E ++ + Sbjct: 416 HALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKVVSPYRYQAQEKGLELAVSVGNAV 475 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++L NL A + + + G Sbjct: 476 PAWMLADPDKFSQVLTNLVSNAIKFTEEGSVEISVTNDNRDSRDMGLLVCVHDTGLGI-P 534 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + L R+ E + S L Sbjct: 535 WDMQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVEMLGGRIWVESMPGKGSSFSFTLP 594 >gi|320354954|ref|YP_004196293.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123456|gb|ADW19002.1| integral membrane sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 547 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 24/226 (10%) Query: 12 MDLV--ALLCSRICHDIISPIGAIHNSL----ELLDEVGIED------------EVMQLI 53 + L + I H+I +P+ I ELL E E ++ Q + Sbjct: 320 EKMANIGRLAAGIAHEINNPLQLIQMQAGWIDELLQEENPEQIANLDEYRQSVGKIKQHV 379 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + L F R + + I + + + + + + + + Sbjct: 380 NRAGTITHRLLGFSRKISAEYDVQINELIRETISFLESEANSNNITLNLHFDDALPVIRT 439 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + +++ L + ++ GG++ I+ S E + NG PE +I + Sbjct: 440 DGSQVQQALLNLIENSLDAVGSGGQIDITTSRSPKEVSIQIADNGPGI-KPEVLAKIWEP 498 Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +AH+ ++ E + L Sbjct: 499 FFTTKEPGKGTGLGLSICSDIAHKLGGEIIAENRPQGGAQFTLKLP 544 >gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 745 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 62/237 (26%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ + + + + H+I +P+ I LL + + E + S Sbjct: 226 LARDHAVSANRAK--SKFLAVASHEIRTPLNGILGMSTLLLDTPLNPEQAAYAKAVKTSG 283 Query: 61 IIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + I + I + + Sbjct: 284 EALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITELLAPRAQARQIEIACYIDERL 343 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARFPEK 163 E + ++LLNL A RGG + NE F ++ G P+ Sbjct: 344 PLEVAGDAARLRQVLLNLASNAVKFTSRGGVALIVEPGIWPNEISFMVRDTGIGI-APDA 402 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + R+ E + + Sbjct: 403 QQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRIALESVPGEGTTFEVSIP 459 >gi|268316749|ref|YP_003290468.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334283|gb|ACY48080.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 646 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 71/236 (30%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSA 60 A+ ++++ L HD+ +P+ ++ ++ + E + +L++L+ ++ Sbjct: 408 AERHLQEINALK--THLLGATAHDLRNPLSSVQGLIQTVREELPPDSPHRELLKLAEAAS 465 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104 VD + + + +D ++ V + Sbjct: 466 QRMLGTIEQLITASALESGRVTFRRMRVDLVELVAETVHFHQDRATRKQQQLVFLGPSTG 525 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + L NL A P G ++T+ + + S++ G ++ Sbjct: 526 SCVVETDPEQLRRALTNLLTNALKFTPSGKRITVQLARHTDTVRLSVRDEGPGLTEADR- 584 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ S + + R+ + + +L Sbjct: 585 ARLFGYFQRLSAQPTGDEPSSGLGLAITKQIVERLGGRIEVDSTPGQGSTFTIVLP 640 >gi|229060996|ref|ZP_04198350.1| hypothetical protein bcere0026_30900 [Bacillus cereus AH603] gi|228718365|gb|EEL69999.1| hypothetical protein bcere0026_30900 [Bacillus cereus AH603] Length = 418 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 16/226 (7%) Query: 4 NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 I + + + + L + I H+I +P+ + +LL ++ + + + + + Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252 Query: 60 AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + T + +I + + K+ + + Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + L N+ ++ GG + I++Q K+ + + G + +I Sbjct: 313 NANTEKLKICLTNIIQNGIEAMKNGGVLQINIQKIKDNIVIDIIDTGIGMSSQQIK-RIA 371 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417 >gi|253699180|ref|YP_003020369.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774030|gb|ACT16611.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 997 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 67/242 (27%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + ++ ++ + +L I HD + + ++ + EL L ++ I +SS Sbjct: 617 EAQLLHVQKLESLGVLAGGIAHDFNNILMSVMGNAELALLTLPPESPARTNLRNIEISSQ 676 Query: 59 SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + M +D + ++ ++E I+ V+ + +S + Sbjct: 677 RAADLARQMLAYSGKGNFVIEEIDVNKLINEMNHMLEVSISKKVDVRFNLDSGLPLVSVD 736 Query: 115 RAKILLNLFMVAHASLPRGGK----------------------VTISVQDSKNENIFSLK 152 +I + + + G F + Sbjct: 737 ATQIRQVIMNLVINASEAIGDRSGVISISTGAMECDAAFLSKLWLNDALREGTYLYFEVA 796 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +G +I D + + V+ + +K + + Sbjct: 797 DDGCGMDPATL-AKIFDPFFTTKFTGRGLGMAAVLGIIRGHKGTIEVHSEPGKGSRFTVF 855 Query: 213 LE 214 L Sbjct: 856 LP 857 >gi|168702308|ref|ZP_02734585.1| two-component sensor histidine kinase PhoR [Gemmata obscuriglobus UQM 2246] Length = 461 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 25/231 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRL 64 + + + H++ +PI I +S+E L + ED ++ + S + Sbjct: 227 QAERMRQDFVANASHELKTPIAVIKSSVEALQDGAAEDPHTLASFLEQVARESDRMTYLV 286 Query: 65 KFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 K M V + D + V Sbjct: 287 KDMLSLSRIESGSLGLEPRVVVLDREISDCMERHHPRADTKTLTLVEKPPPDAPANVAAW 346 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +++ NL A P GG++T+ + + F ++ G + Sbjct: 347 ADPDALRQVMDNLVDNAIKYTPNGGRITVRWGATADTVSFEVEDTGVGIPEGDVNRVFER 406 Query: 170 GNVESTIDS-----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + ++ L + Sbjct: 407 FYRVDRARGRAEGSTGLGLSIVKHLVQAMRGQVRVNSKLGKGTTFRVTLPR 457 >gi|149276964|ref|ZP_01883107.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] gi|149232633|gb|EDM38009.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] Length = 537 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 61/210 (29%), Gaps = 18/210 (8%) Query: 23 CHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VD 78 H++ +PI ++ SL+LL+ + ++LI S+ S + + D Sbjct: 326 SHELKTPITSLKASLQLLERMKNKPYSEMHIRLIEQSAKSMNKLGYMVDELLNMSKLNRD 385 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGE----------KIDLSRERAKILLNLFMVAHA 128 L + + V++ E ++++N A Sbjct: 386 QLNLEKSTFNLHDLMSMCCNHVRLEGKYELMLEGEKELLVHADEHRIDQVIVNFVNNAVK 445 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST-IDSHDIQFY 184 P ++ + + N + +G P F + + + + Y Sbjct: 446 YAPESYQIRLKISSKDNVAKVLVSDSGPGIDGEVLPNLFDRYYRASHSEKSYNGLGLGLY 505 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + E + L Sbjct: 506 ICKEIITKHGGEIGVESVLGQGSTFWFTLP 535 >gi|327191887|gb|EGE58878.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CNPAF512] Length = 867 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + L+ + Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 523 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151 + ++L+NL + A ++P+GG S +++ + + Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPQGGTLTLRTRNLTAADVAAFNYSYMPAEDMVLVEV 643 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G P+ +I + + + V + ++ + PE Sbjct: 644 TDTGTGI-APDIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702 Query: 210 SALLEK 215 L + Sbjct: 703 RVFLPR 708 >gi|291458231|ref|ZP_06597621.1| sensory box histidine kinase [Oribacterium sp. oral taxon 078 str. F0262] gi|291418764|gb|EFE92483.1| sensory box histidine kinase [Oribacterium sp. oral taxon 078 str. F0262] Length = 471 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 20/217 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM----- 67 + + HD SP+ +I LE + + +E + +Q + + + + Sbjct: 245 QFIANVSHDFRSPLTSIKGYLEAILDGTIPPEMERKYLQRLIVETERLEKLTGSLLSLNS 304 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLN 121 + F S D + + + E + ++L N Sbjct: 305 VEQKGFLIRSSFDVNQVIKSVCESFEMSCQKKRITFELTFSEKREPVYADHARIQQVLYN 364 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177 L A + I + S+K +G + + + ++ D Sbjct: 365 LIDNALKFSGENSVIGIRSGLRGTKVFVSVKDSGIGIPKKDLTKIWDRFYKTDLSRGRDK 424 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + + + L Sbjct: 425 QGTGLGLSIVKSIIHAHGENIDCVSTEGVGTEFTFTL 461 >gi|302382299|ref|YP_003818122.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192927|gb|ADL00499.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 524 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54 K + L + A+ + + + H++ P+G+I N L +L + ++ + Sbjct: 282 RKQLEARLRRDSRVSAMGEMAAALAHELNQPLGSIVNYLHGCRRMLAGQTPDSPLLPHLD 341 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVS 103 + A+ +R + + D++ + ++++ A Sbjct: 342 KAVEEALRAGHVIRHLRSFVSTEDNVRQPMTLVPLVDEACAFAMLGALSKDVRLTTEHQD 401 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARF 160 + + + +++ NL A + + + V + S+ NG Sbjct: 402 FDLVVSVNAVQINQVIHNLIRNALDATALVTEPRLHVTTGPHDGGMVMISISDNGPGI-A 460 Query: 161 PEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ ++ + V S + + + R+ E S L Sbjct: 461 PDVEGRLFEPFVSSKGTQGMGVGLAICRTIVEAHHGRIWVEPAAAGGACFSFTLP 515 >gi|229590227|ref|YP_002872346.1| putative sensor kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] gi|229362093|emb|CAY48995.1| putative sensor kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] Length = 726 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 + + S L A+ L + HD + + I +S++ L + G+ +E Q Sbjct: 346 LTQAEAALRQSQKLEAIGQLTGGVAHDFNNLLTIIRSSVDFLRQPGLSEERRQRYMGAVS 405 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +S L F R D+ + +I +++E VQV Sbjct: 406 DTVERASKLTSQLLAFARRQPLNPEVFDAGQRVKNIGEMLESVTGARIHVQVQLPERPCH 465 Query: 111 LSRERAKILLNLFM---VAHASLP-------------RGGKVTISVQDSKNENIFSLKIN 154 + + ++ L A ++ ++ + + SL Sbjct: 466 VRVDASQFETALINIALNARDAMDGQGTLTLRVANVDSMPRIRGDEEAHQPFVSISLADT 525 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + F +I + + + V A ++ + V + Sbjct: 526 GTGI-SSDTFERIFEPFFTTKAVGKGTGLGLSQVFGFAKQSGGNVDVASRPGEGTVFTLY 584 Query: 213 LE 214 L Sbjct: 585 LP 586 >gi|190892012|ref|YP_001978554.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190697291|gb|ACE91376.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 867 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + L+ + Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 523 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151 + ++L+NL + A ++P+GG S +++ + + Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPQGGTLTLRTRNLTAADVAAFNYSYMPAEDMVLVEV 643 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G P+ +I + + + V + ++ + PE Sbjct: 644 TDTGTGI-APDIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702 Query: 210 SALLEK 215 L + Sbjct: 703 RVFLPR 708 >gi|182412287|ref|YP_001817353.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839501|gb|ACB73753.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 642 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 K + L + + +L L I HD + + IH E + E VMQ Sbjct: 253 RKALEAELRQAHKMESLGTLAGGIAHDFNNLLAIIHGYSEFCLQGAAEPAVMQKSLQEIH 312 Query: 59 S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R A VD D+ ++ + + + Sbjct: 313 RAAQRASGLVKQILTFSRKAEIRYAPVDLNQLARDLVALMSETFPRTITFTLDLAEKLPP 372 Query: 111 LSRERAKIL---LNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLK 152 L ++ ++ LNL + A ++P G S + + S+ Sbjct: 373 LLADQTQVQQIVLNLCVNARDAMPDGGSIVVSTAIRLGAELQSRHYSAEPVRRYACLSIA 432 Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +G+ PE ++I + + + V +A + + E Sbjct: 433 DSGSGM-TPEVCSRIFEPFFTTKQSNQGTGLGLAVVYGIATSHNGFIDVESTVGIGSTFR 491 Query: 211 ALLE 214 L Sbjct: 492 VYLP 495 >gi|220915246|ref|YP_002490550.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953100|gb|ACL63484.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 498 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 61/229 (26%), Gaps = 17/229 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 A+ L + L L + + H++ + + I + L + ++ IR Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHELGNSLNVIRGYAAVTSRELPDDSPHRSDVEAIRR 314 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110 A ++ + + + I + + V + Sbjct: 315 EVTRAAGLIERFLVFARARTVHPLVQPVEPILREAVEVLGPAAAHAKVERAVEVEPGLPE 374 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFT 165 + + + LNL + A ++ G ++V+ + ++ G E Sbjct: 375 VLADAELLRQAFLNLGVNAVQAMQDRGGGKLTVRALREPGGLVVEFHDTGPGI-DAEAAA 433 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V A + + L Sbjct: 434 HVFEPFFTTKASGTGLGLAIVRQAAEAHGGTVEVAGAPGAGATFRVHLP 482 >gi|29347830|ref|NP_811333.1| two-component system histidine kinase, FrrD [Bacteroides thetaiotaomicron VPI-5482] gi|253572216|ref|ZP_04849620.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] gi|29339732|gb|AAO77527.1| two-component system histidine kinase, FrrD [Bacteroides thetaiotaomicron VPI-5482] gi|251838396|gb|EES66483.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] Length = 482 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + + ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGARQEGDMIDLYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISRDFVEAHGGTLTVESELGKGSRFVMRLK 481 >gi|15616039|ref|NP_244344.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10176100|dbj|BAB07196.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 294 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 66/213 (30%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIR---------LK 65 + + H+I +P+ +I + L++ + + Q + AI Sbjct: 77 MAAFFAHEIRNPLTSIIGFTQYLEQNETIRSDPTIAQYTSIIKDEAIRMEALIQELLTFA 136 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLNL 122 L +D + + + + R ++ ++L+NL Sbjct: 137 KAHLDEENLSLIDVKRSIEKVILIQKMKQDKKEIRFRTDLAEGLYISGNVTRFEQVLINL 196 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 A ++ G ++I + + ++ I + +G + I + + + Sbjct: 197 IKNAVEAIEEEGTISIKLSNDQDAVILVIHDDGPGIAEDQL-ENIFYPFFTTKDEGTGLG 255 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L + VV++ + K Sbjct: 256 LPICKTIIEAMEGTLEIKNHPKRGVVVTLTIPK 288 >gi|330866571|gb|EGH01280.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 436 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+++ + +++ I Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F+R L L + R+ + ++L Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327 Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 NL A G +V +S + + S+ G E F + G+ + Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEGRVRLP 426 >gi|319405628|emb|CBI79251.1| Sensor protein [Bartonella sp. AR 15-3] Length = 850 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 61/243 (25%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 M ++ M V L I HD + + AI S + L + I+ + Sbjct: 462 MLEDKMIQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSSDPAHADLINIKNN 521 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109 + A ++ + I ++ I + K + Sbjct: 522 ANRAAALVQQLLAFSRKQTLRLEKIDFTELLSDIRNLILPLLGNNIQLKIIHGKDLWNVK 581 Query: 110 DLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154 ++++NL + A ++ + + + S+ Sbjct: 582 IDQPSFQRVIMNLVINARDAMLDGGIVTIATNNITKQQSAEFNYAGFVVGEYVQLSISDT 641 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ + + + V + + + + + Sbjct: 642 GTGISAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGYIYCDSQEGEGTTFHIF 700 Query: 213 LEK 215 L + Sbjct: 701 LPR 703 >gi|300172952|ref|YP_003772118.1| histidine protein kinase sensor protein [Leuconostoc gasicomitatum LMG 18811] gi|299887331|emb|CBL91299.1| histidine protein kinase, sensor protein ' [Leuconostoc gasicomitatum LMG 18811] Length = 451 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 21/227 (9%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR 63 L + + + H++ +P+ AI +E L ++ + ++++ S Sbjct: 224 LQIERMQSDFLANASHELKTPLTAITGFVETLQGPAGEDPNTRKQFLKIVADESERLSSL 283 Query: 64 LKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + D + + + + + VS L Sbjct: 284 VIDILSLSRVKQKNDAVDTKLIIKNVVDEQWQHIKTMAATKHITFKNNVSQNFVVHGLKT 343 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170 + IL NL + A +GG VT+SV ++K +G + F + G Sbjct: 344 DLETILQNLIVNAVKYNKQGGDVTVSVYKDHQHWQINIKDSGIGIPKNQQSRIFERFYRG 403 Query: 171 NVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ + +S L Sbjct: 404 DESRQRTIANGTGLGLAIVNEIVSKHNGEVKVNSQVGVGTTISVTLP 450 >gi|228984474|ref|ZP_04144651.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775177|gb|EEM23566.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 466 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKICISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + ++K G + + Sbjct: 364 NAIRYTNQNGAIMITLRQIDDYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458 >gi|220917252|ref|YP_002492556.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955106|gb|ACL65490.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 595 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 65/232 (28%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH-NSLELLDEVGIEDEV---MQLIRLS 56 M + L + HD+ +P+ AI + LL + D + IR + Sbjct: 356 MRDEQRLR-QAQAFEQQLIGIVSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSA 414 Query: 57 SMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106 + A ++ + D + + + V+ S Sbjct: 415 AERAARLIRDLLDLTRARLGGGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEASGDT 474 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 A+++ NL A RG V + + E S+ G T Sbjct: 475 HGQWDPDRIAQVIGNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGTPIPAETVRTI 534 Query: 167 IVDGNVES-TIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 G + + + V +A + R+ ++ + L + Sbjct: 535 FEAGGRAAPDPTGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 586 >gi|312115732|ref|YP_004013328.1| multi-sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311220861|gb|ADP72229.1| multi-sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 805 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 72/243 (29%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + V L I HD + + AI +LL + + I+ + Sbjct: 418 LTDEKAAQGQKLQAVGELAGGIAHDFNNLLTAIIGFSDLLLRRFRASDPAFKDLMNIKNN 477 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTGEKI 109 + A +K + +++ L D+ + + + K Sbjct: 478 ATRAAELVKQILAYSRRQTLRPAILRLTDVIEEFQATMGRTLGEKVKAKVQHGRDLWFVK 537 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154 + ++++NL + A ++P GG +TIS + ++ + Sbjct: 538 ADEGQIFQVIMNLAVNARDAMPEGGDITISTANVSERESLLLKERGVERGEYVTVEVRDS 597 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G PE +I D + + V + + +L + Sbjct: 598 GTGI-KPEHLEKIFDPFFSTKEVGKGTGLGLSTVYGIVKQTGGTILVDSEMGKGSSFRIF 656 Query: 213 LEK 215 L + Sbjct: 657 LPR 659 >gi|270339991|ref|ZP_06006671.2| sensor histidine kinase/response regulator [Prevotella bergensis DSM 17361] gi|270333078|gb|EFA43864.1| sensor histidine kinase/response regulator [Prevotella bergensis DSM 17361] Length = 1362 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + L+ + HDI SP+ I L+ L + + + + + + +A Sbjct: 835 MRRKR-VEMEESKMRFLINAT--HDIRSPLTLILGPLKKLKDRLTDPDTLADLDIIDRNA 891 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105 M+ + D + + I+ + + + S Sbjct: 892 QRLLLLVNQILDRRKIDMKQMHLHCSETDLVELIMGIKSLFQYNATQRDITLRLIHDSHP 951 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 K++ NL A P GG++TI++++ N ++ NG E Sbjct: 952 YMVWIDKNNFDKVVSNLLSNAFKFTPDGGEITITLEEDANSVRMIVQDNGPG-FQDEHPD 1010 Query: 166 QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLEK 215 + D + + I + H + + D + L K Sbjct: 1011 RFFDRFYQGSGTPVSVQPGTGIGLNLCRSIVHMHGGTIKAANRSDGHSGACFTVELPK 1068 >gi|256839211|ref|ZP_05544721.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256740130|gb|EEU53454.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 656 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI +++ + + +L + + Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489 Query: 62 IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + DI +I + + +++ Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549 Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L NL A + G + ++ E F + G + ++ Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D V + + L + R+ S + + Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656 >gi|253564264|ref|ZP_04841721.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251948040|gb|EES88322.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 534 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 25/229 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ L + + H+ +P+ I + +EL+ + + ++K + Sbjct: 1 MNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHAQQMKLLI 58 Query: 69 LAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112 D + + A K + Sbjct: 59 SELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQDISIWIDD 118 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + K+L NL A +P G+++I + ++ + ++K +GN E +I D Sbjct: 119 WQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QERIFDRFY 177 Query: 173 ESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ I + + + E + L K Sbjct: 178 QADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESESNEGSCFIVKLPK 226 >gi|228899003|ref|ZP_04063277.1| hypothetical protein bthur0014_2320 [Bacillus thuringiensis IBL 4222] gi|228963366|ref|ZP_04124528.1| hypothetical protein bthur0004_2500 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796326|gb|EEM43772.1| hypothetical protein bthur0004_2500 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860637|gb|EEN05023.1| hypothetical protein bthur0014_2320 [Bacillus thuringiensis IBL 4222] Length = 314 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 72 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYM 131 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G V + + ++ E + G + Sbjct: 192 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E + + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 308 >gi|218134348|ref|ZP_03463152.1| hypothetical protein BACPEC_02241 [Bacteroides pectinophilus ATCC 43243] gi|217989733|gb|EEC55744.1| hypothetical protein BACPEC_02241 [Bacteroides pectinophilus ATCC 43243] Length = 299 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + E + + + + + Sbjct: 80 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 139 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 140 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 199 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G + + ++ K+ +F L+ G F + + + + + Sbjct: 200 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 259 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 260 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 292 >gi|196231516|ref|ZP_03130374.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224369|gb|EDY18881.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1025 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 24/232 (10%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSA 60 + L +L + I HD + + AI ++ L E + + + ++ A Sbjct: 635 EERQKADKLESLGVVAGGIAHDFNNLLTAILGNISLALLCAPEPQVGERLGAAKRATSRA 694 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRER 115 + + V + + + + + + + Sbjct: 695 QELAQQLLTFAKGGAPVKQTASMSQLLRDTLSLTLHGSKAHIEFHVADDLWPVDIDPGQM 754 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS-------------KNENIFSLKINGNLARFPE 162 ++++ NL M A ++P GG + + ++ SL+ G E Sbjct: 755 SQVINNLAMNADQAMPAGGVLRVQAENVDLVTHSVSLGLDAGRWVKISLQDQGIGI-PEE 813 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + L Sbjct: 814 YLKKIFDPYFTTKPKGSGLGLATAYSIVKNHHGVIAVDSKPGEGSTFTICLP 865 >gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 929 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 57/220 (25%), Gaps = 23/220 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIRLKFMRLA 70 + + + H++ +P+ I ++L + E + + + ++ + L+ Sbjct: 474 SQFLASVSHELRTPLNGILGYTQILRRDPLLGEKQREGIRVIHESAEHLLVLINDVLDLS 533 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSWTGEKIDLSRERAKI 118 G ++ G + + V + + ++ Sbjct: 534 KIEAGRIELHPGDFALAEFAAGAERVFAPRAREKNLLLETALAPDLPEFVRGDEARLRQV 593 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173 + NL A +GG V + FS+ G + +I + Sbjct: 594 VFNLLGNAVKFTAQGGVVFSISSSAGGGLRFSVSDTGRGIAAADLS-RIFEPFTQVGEST 652 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + L RL E L Sbjct: 653 GAATGTGLGLAISRSLVERMGGRLQVESKPGWGSRFWFDL 692 >gi|134299696|ref|YP_001113192.1| histidine kinase [Desulfotomaculum reducens MI-1] gi|134052396|gb|ABO50367.1| histidine kinase [Desulfotomaculum reducens MI-1] Length = 324 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 66/237 (27%), Gaps = 27/237 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61 N + L S I H++ +P+ +I L+ + + + + + LI ++ Sbjct: 81 NENLR-QLEESRRQLVSDISHELGTPMTSIQGYLKAMLDNVIEPDRQYLNLIYDKTLLVN 139 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------SW 104 ++ + F D + + + ++ + Sbjct: 140 QLVEDLFELSKLEANQVSFNFKEVTIQDLMANITRKFALDFKNSGINFMIDPIENLTPDN 199 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 ++++NL A P + I + E I + +G+ Sbjct: 200 HIIMNVDPARIDQVMVNLINNAVKYTPTGGTIRIQCQIQNAEKDGEVIIKVIDSGSGIDE 259 Query: 161 ---PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + G + + + ++ + + + + L Sbjct: 260 KSLPFVFDRFFKGTQSQKVGGTGLGLAIAKQIIIKHGGYIGVDSMVNKGSTFYFSLP 316 >gi|302689121|ref|XP_003034240.1| histidine kinase [Schizophyllum commune H4-8] gi|300107935|gb|EFI99337.1| histidine kinase [Schizophyllum commune H4-8] Length = 1636 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 34/247 (13%), Positives = 73/247 (29%), Gaps = 37/247 (14%) Query: 1 MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM 50 +A+ ++ + L L S + H++ +P+ I +E L + + + Sbjct: 589 LAREED-SIRAQRLADLDSAKTAFFSNVSHELRTPLTLIGGPVEDAVATLPDGALRTS-L 646 Query: 51 QLIRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 ++ + + + F + L + + + + Sbjct: 647 RMAMRNVQRLSRLVDSLMDFSKLAAKRLEGAFRPVKLGPFVADLASMFRDPVERSGMGYE 706 Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V E+ + KI+ NL A G +TI V +E FS++ G Sbjct: 707 VVCDLDPEQPLCYIDTQFWEKIVFNLIGNAFKYT-MSGTITIMVSFDDHEATFSVQDTGI 765 Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIID----DHNV 207 + +I + + + I L H + L D +H Sbjct: 766 GIPAADL-DKIFNRFHRVACVSRSYEGTGIGLSLTKELVHLHGGELTVTSNDNPDGNHGS 824 Query: 208 VLSALLE 214 + L Sbjct: 825 TFTVTLP 831 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 6/77 (7%) Query: 144 KNENIFSLKINGNLARFPEK---FTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRL 197 S+ +G + + F + G++ + + + L + R+ Sbjct: 1394 PIYIYVSVTDSGPGLQPEDLTILFRRFQQGSLAAKSDVFGGSGLGLFVSRKLCNLMGGRI 1453 Query: 198 LPEIIDDHNVVLSALLE 214 + V S +E Sbjct: 1454 QVTSELGNGAVFSFFIE 1470 >gi|283850290|ref|ZP_06367579.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283574316|gb|EFC22287.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 666 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 60/243 (24%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIR- 54 + + + + + L + + I H++ P+ AI L LL E G+ L Sbjct: 416 LVEKDAQLIQASKMKTLGEMSAGIAHELNQPLNAIKMGSDYLRLLAEKGLPPPAGHLAAV 475 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQV 102 A + +R + + + + + + ++ + + Sbjct: 476 TSQVSEQVDRAAAIIGHLRDFGRKSEPMPENVDINEPIKGVFTIIGHELALQDIEVVLDL 535 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------KNENIFSLKI 153 + ++ NL + A +L + + Sbjct: 536 ETVAPIKAHANRLEQVFFNLVVNARDALTGDPGQNPPDRPRRIAIRSRTEGGRVAVDVAD 595 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G E+ +I + + + + + + V Sbjct: 596 TGCGIAEGERR-KIFEPFFTTKATGRGMGLGLAITYGIIKDYGGNIEVGDAPGGGSVFRL 654 Query: 212 LLE 214 Sbjct: 655 TFP 657 >gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586] gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586] Length = 967 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 56/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL E + +++ + S Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WT 105 L + Y+ + + + + + S T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGIKLRYQFADGVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L NL + + I + F ++ +G E+ Sbjct: 577 QFWQGDEIRIGQVLNNLVGNGIKFTEQGEVCIQICQDPAGQGIRFEVQDSGIGIAQEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + S L Sbjct: 637 SLFDAFTQAEAGRRKQGGTGLGLAISRKLVQAMGGEMRLSSEQGQGSCFSFTLP 690 >gi|300773129|ref|ZP_07082998.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759300|gb|EFK56127.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 582 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 68/226 (30%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 S L S + H++ +P+ ++ +++L + + E +L + S K + Sbjct: 353 SEEQLKNDFISIVSHELKTPLTSLMGYVQILQLILKDHEDERLTGILDRSKSQVSKMNSM 412 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------------- 116 G+ G +E+ + + + + E Sbjct: 413 ISGFLNVSRFEDGNLYLEKQSFEINDMISEIISDVSLTHSAHRIEFEPTQSVVLYADRDK 472 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 +++ NL A P ++ + + + S+K G + E ++ Sbjct: 473 LGQVVNNLLSNAIKYAPHSKEIFVKCALNSGNLLVSVKDRGLGIQQEEL-ERLFTRFYRI 531 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 TI I Y + + R+ E + V + Sbjct: 532 ENKQTKTISGFGIGLYLCAEIIKRHNGRIWAESEEGKGSVFHFTIP 577 >gi|162454050|ref|YP_001616417.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164632|emb|CAN95937.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 586 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 55/225 (24%), Gaps = 19/225 (8%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF-- 66 + L S + HD+ P+ AI +L + + S + Sbjct: 357 MERERLREEWLSIVAHDLKQPLTAIAACAGMLSRRSEDAGIQAWSGKIVASVQRLERMTE 416 Query: 67 ---------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ER 115 R D L ++ V + + Sbjct: 417 DLLDASKLEARRFSLERRPTDLRALLHAAVELAAAERPERAVVLAADEDVPPVHADAARM 476 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK------FTQIVD 169 ++L NL + A + +++ E +++ G E F ++ Sbjct: 477 DQVLGNLLLNAAKYGDPDAPIRVTLSLRDAELEVAIENRGPGISPDELPRLFQRFQRLSS 536 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y + + R+ + D L Sbjct: 537 DPARSRPPGTGLGLYICKGIVEAHGGRIWAQSQLDETTSFHFTLP 581 >gi|163783845|ref|ZP_02178825.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1] gi|159880894|gb|EDP74418.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1] Length = 338 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 19/217 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69 S + H++ +PI + +E L+ + + I ++ + Sbjct: 121 FVSNVSHELKTPIAVLKGVIETLEAEENDKGKKKFISMAQKRINQMNTLINDLLIIARLE 180 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + + V +V+ + ++ + +L NL Sbjct: 181 SKEDKIIKTNINLKRFIDQIYEDLSHLTQEKNVKFYNKVNENFKIYGDEKKLSILLKNLI 240 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDS 178 A GKV + K+ + +K G F + + + Sbjct: 241 ENAIKYNKENGKVEVKGFLDKDYTVIEVKDTGIGIPKEALPLIFERFYRVDKSRSRNVGG 300 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A +K ++ E L K Sbjct: 301 TGLGLSIVKHIAEAHKGKVSVESTLGKGSSFKVYLPK 337 >gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 676 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 73/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + ++ L + + I H++++P+ + L + ++ Sbjct: 432 LRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIH 491 Query: 58 MSAIIRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S L + + I IE ++E ++ +++ Sbjct: 492 DSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLVKIAENTIESLLEKALSEQVNLKLDLQ 551 Query: 106 GEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +IL NL A P GG VT+ + ++ +IF ++ G Sbjct: 552 IDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRIWVEEDTSIFQVEDTGIGIPE 611 Query: 161 ------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 EKF Q+ + + L ++ R+ E + + + Sbjct: 612 EQLPLLFEKFQQLDTPY-RRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 670 >gi|293372871|ref|ZP_06619245.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292632160|gb|EFF50764.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 250 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44 K+ L + L+A + + H+I +P+ +I +L Sbjct: 9 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 68 Query: 45 -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +++LI + I +M +F + + + QV+ + Sbjct: 69 GAINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRLEFLK 128 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 + E ++L N A K+ + ++ G Sbjct: 129 EVDNIPLEINVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPDEGHVRIYVEDTGRGI 188 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + ++ + R+ + + +L Sbjct: 189 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGRIELKSEVGKGSRFTVILP 245 >gi|325678508|ref|ZP_08158123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324109819|gb|EGC04020.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 373 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 73/235 (31%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + L A + I HD+ +P+ +I + + LDE + + Sbjct: 132 KEEAALLAQNEQLRANMLRSISHDLRTPLTSISGNASTLISGGDTLDESARQQIYTDIYS 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105 S + + G + I + ++ ++++ + +R + Sbjct: 192 ESMWLIGMVENLLYATRIEDGRMQLNISVEILDDIVQEAVRHTERTHSKRNIIVDMLDEI 251 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++NL A VT++V+ + S+ +G E+ Sbjct: 252 IPVMADANLIVQVIVNLMDNAVKYSDENSDVTVTVRRENAYAVISVSDHGTGI-SDEEKE 310 Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D S + + + + + ++S L Sbjct: 311 KVFDMFYTGGSRSSDSRRSLGLGLALCRSIITSHGGTISVSDNIPNGTIVSFTLP 365 >gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 428 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 79/243 (32%), Gaps = 29/243 (11%) Query: 2 AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDEVG-------IEDE 48 + L ++ L + S I H++ +P+ AI ++L D Sbjct: 154 RQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDI 213 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103 + +++ + +++ + + + +G + + D+ +V+ ++ + + + Sbjct: 214 LKRILNNAKNLSMLLNEVLDFSKIDSGRLALKPEIFDLSKVVNHAVSEIRSLVEAKKLSL 273 Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + ++IL+NL A RG + SKN S++ G Sbjct: 274 SVEIELENTLVFNDPMRVSQILINLLSNAIKFTERGCIWVRVTEPSKNRIAISIRDTGIG 333 Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + VD + + + L +++ E + Sbjct: 334 ISSQDCEHIFEAFRQVDQGISRKYPGMGLGLAIIDSLVKIMGGKIILESQLAVGSLFGVE 393 Query: 213 LEK 215 L + Sbjct: 394 LPR 396 >gi|239905563|ref|YP_002952302.1| sensor protein KdpD [Desulfovibrio magneticus RS-1] gi|239795427|dbj|BAH74416.1| sensor protein KdpD [Desulfovibrio magneticus RS-1] Length = 889 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGI 45 AK L A L S + HD +P+ AI S E L + + Sbjct: 654 AKKTLVEAEREKLRAALLSTVTHDFKTPLSAIAGSAESLLALGEATTPEVRRSLEENIAQ 713 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E ++ + + + + ++ ++G Sbjct: 714 EASRLERLVDNLLRIAALESGSVVPDIKLIPIEDVVGSALARLDATLAGHAVHLDIPDDL 773 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++L+NL A P G ++ +S ++ + ++ G + Sbjct: 774 PPIPMDEVLMEQVLINLLENAAKHTPLGTEILVSAAIRGHKAVIEVRDAGPGLPPGDPEK 833 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ S + + + + + + + +L Sbjct: 834 LFERFQRGDRSS-TSGYGLGLAICRAVVKAHGGSITADRNRPAGAAFTVILP 884 >gi|229083560|ref|ZP_04215891.1| hypothetical protein bcere0022_2310 [Bacillus cereus Rock3-44] gi|228699757|gb|EEL52411.1| hypothetical protein bcere0022_2310 [Bacillus cereus Rock3-44] Length = 286 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S L S I HDI +P+ +I ++ L + E+E ++ + + S Sbjct: 39 LEKVQVEAKKSQKARKQLLSSISHDIRTPLTSIIGYIDALKDGIAASEEEKLEYLEILSN 98 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------S 103 + + + F L + + + + Sbjct: 99 KSNGLKQLVDEIFNMAKLDADEFPLKEEQLDFSEITRESLIAFLPELSTNNIELRVNIPE 158 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 S + + NL A G + I + ++ ++ + G + Sbjct: 159 TPSIITGDSFSLMRAISNLLKNAIHYGKPGKIIGIELLETTHDYQLLIWDKGPGIATNDL 218 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + + L ++ + E I + K Sbjct: 219 EHVFERMYRTDQSRNLSHGGSGLGLAIAKALIEKHGGEIWAESIPWEKTTFGFSIPK 275 >gi|224540211|ref|ZP_03680750.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus DSM 14838] gi|224518173|gb|EEF87278.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus DSM 14838] Length = 393 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 17/228 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60 ++S+ L + + I H++ +P+ AI L+ + + M +I ++ Sbjct: 159 ERKNSISAERLKSTFIANISHEVRTPLNAIVGFSGLIATASDEEEKKLYMDIISENNERL 218 Query: 61 IIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGE 107 + + + + + D L L + +V + + Sbjct: 219 LRLINDIFDLSQIEAGTLNFEYSEFDANDLLRELEGMFKVKLFNNPSVDLICEDSVQSII 278 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++ NL A G + +E F + G E+ Sbjct: 279 MYSERQRIIQVMANLIHNAIKFTKSGKIRFSCRMEGTDEVYFYVSDTGIGIPKEEQQEIF 338 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R E + ++ Sbjct: 339 SSFKKLDREVPGTGLGLTLSQIIIQNLGGRAGLESEVNKGSTFWFVVP 386 >gi|153854308|ref|ZP_01995607.1| hypothetical protein DORLON_01602 [Dorea longicatena DSM 13814] gi|149753083|gb|EDM63014.1| hypothetical protein DORLON_01602 [Dorea longicatena DSM 13814] Length = 450 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 69/235 (29%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + F+ S + H++ +P+ I + E L ++ +++ Sbjct: 219 MFERLEFSFEKER---QFTSDVSHELRTPVAVIISQCEYLLENENLSAEDKEEIAVILKQ 275 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + S L R G ++ + + Q ++ +Q Sbjct: 276 AKRMSKLTNEMLMIARNEQGEQHLMEKLDFGLLSELVIEELQTKAQEKNIEITLQKQDDL 335 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++NL A G + + ++ ++ + +K +G E + Sbjct: 336 FMNGDQTLILRMMMNLITNAINYGKTNGHIHVILKVENDQIVGEVKDDGIGI-SEEHLDR 394 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + V + + + + E I+ K Sbjct: 395 IWERFYRIDKSRSRENGGTGLGLSMVRWIVNLHNGTIHVESIEGIGTSFIFRFPK 449 >gi|125974350|ref|YP_001038260.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714575|gb|ABN53067.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 463 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 72/230 (31%), Gaps = 18/230 (7%) Query: 4 NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56 N+ L + + L + + + H++ +P+ + + +E + + + I Sbjct: 232 NLAQTLENQEALRKKMSADMAHELRTPLATLQSHMEAMIDGIWETDADRLKSCYEEIIRI 291 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + K + ++ + + + +++++ G ++ Sbjct: 292 NKMVGDLEKLAKYESEGFVLDKTVFDMSALIRRIICNFEPEFKNNGIEIAFEGGTEEIFA 351 Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167 + +++++NL A GGKV IS + + +K NG + F ++ Sbjct: 352 DKDKMSQVIINLLSNALKYTQEGGKVEISAKSKGDVLEIRVKDNGQGIPEEDLPFVFERL 411 Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + + L K Sbjct: 412 YRADKSRNRKTGGAGIGLTIAKTIVEAHNGHIEVYSKINEGTEFLITLPK 461 >gi|324997180|ref|ZP_08118292.1| signal transduction histidine kinase [Pseudonocardia sp. P1] Length = 492 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 57/204 (27%), Gaps = 12/204 (5%) Query: 24 HDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 H++ +PI + L +L + E + L+ + M Sbjct: 286 HELRTPITIVRGHLGVLDARDPEDVTETVALVDDELERMNRLVSEMLALTRAEQPSLLRP 345 Query: 82 GLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 D+ ++ + D +++ + ++ L A G Sbjct: 346 ESVDVAELTRELFDKLTGLADRDWQLESVAHVHARMDPHRITQAVVALADNATRFTGAGD 405 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVESTIDSHDIQFYYVILLAH 191 ++ + + + + G ++ + G D + V +A Sbjct: 406 RIALGSEAVGDRLRVWVADGGPGVAPEDRHRVFRRFARGENAPRSDGAGLGLSIVEAIAT 465 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + R+L E H + L + Sbjct: 466 THGGRVLLESTPGHGATFTLDLPR 489 >gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] Length = 1238 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---- 70 S + H++ +P+ I + L I D+ ++ I S L + Sbjct: 335 FMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLINDILDAA 394 Query: 71 -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILL 120 V+ + D+ + + ++ + + ++ Sbjct: 395 SMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKRGVKLVNDLRENVPFVLGDTGRIIQVFH 454 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVEST 175 NL + G ++I+ +E ++ G + VD +V Sbjct: 455 NLIGNSCKFT-HNGFISIAASVKDDEVEVAVSDTGIGIPEDKFDQIFLAFEQVDMSVTRK 513 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + R+ + + L+ Sbjct: 514 YGGTGLGLNLVKQLVEAHGGRISVKSKEGQGTTFFFTLK 552 >gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 984 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 28/238 (11%) Query: 5 ICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 + L + L + SR+ HDI +P+ I E+ L + + + IRLS Sbjct: 467 LNTALEAAKLANAAKSEFLSRMSHDIRTPMNVIAGMTEIADAHLQDPERVKDCLHKIRLS 526 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS 103 S + + + + + + +I + + + + Sbjct: 527 SHHLLGLINDVLDMSQIESGKVSIHMAPLSLPDLVREIIMITLPNVRAKRQKFKVHLMNV 586 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN--IFSLKINGNLARFP 161 +ILLNL A P G++ V+ +N F++ G + Sbjct: 587 RQEHFYSDELRLRQILLNLLSNASKFTPENGQIVFEVEQLENNAALSFTVSDTGPGIKED 646 Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E I+ + V L ++ + L Sbjct: 647 FQEHIFETFARERDSRTDRIEGSGLGLAIVKRLTELMDGDIILGSLPGQGTTFRVTLP 704 >gi|225575182|ref|ZP_03783792.1| hypothetical protein RUMHYD_03271 [Blautia hydrogenotrophica DSM 10507] gi|225037590|gb|EEG47836.1| hypothetical protein RUMHYD_03271 [Blautia hydrogenotrophica DSM 10507] Length = 472 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 69/213 (32%), Gaps = 21/213 (9%) Query: 22 ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF------ 71 + H+I +P+ +I +LL + + ++ I + + + Sbjct: 245 MTHEINTPLTSILGYAQLLKTANCTRQQQIKALENIESEARRIQQMYQKLMQLHKIRAEG 304 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF---MVAHA 128 V L + D + ++V+V + E+ ++ + + + L A Sbjct: 305 WKAEPVKLR-DLEADLRQDLDQLFAKQQVRVEFQWERQTVNSDYLLLYILLSNLLRNAAL 363 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQ 182 RGG+V + ++ ++ + ++ G E ++ + I Sbjct: 364 YSDRGGRVRVCAENCEDGFVLRVQDWGRGI-PAEAVERVTEPFYRVDKSRSRQTGGSGIG 422 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + + L ++ ++A + Sbjct: 423 LYLCRQIVEQLGGWLEIHSAEEKGTTVTARFPR 455 >gi|254412242|ref|ZP_05026017.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181208|gb|EDX76197.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 365 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVM 50 + + L+ L + H+ +P+ I +S +LL+ + E + Sbjct: 127 EERLRLALAKEKELNQLKTQFIAITSHEFRTPLTTISSSNDLLERYCRDTMDAKKEKHLR 186 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 Q+ + + + + +G V+ + D+ + + + + Sbjct: 187 QIKLSVNQMIQLLDDVLLIGRAESGKVELQLIPIDLVKFCHNLVEEIQTNAGDKYQIIFT 246 Query: 111 LSRERAKILLNL----------FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E + L++ A P+GG VT + + F +K +G Sbjct: 247 HQGEFTETCLDINLLRPILSNLLANAVKYSPQGGVVTFHLFSNDTTITFQIKDSGIGIPP 306 Query: 161 P---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I + V + + + + + L Sbjct: 307 EAQKYLFESFHRASNVGKIKGTGLGLSIVKRCVDIHGGEISVDSEVNVGTTFTVKLP 363 >gi|153808319|ref|ZP_01960987.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185] gi|149129222|gb|EDM20438.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185] Length = 482 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLGITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + N ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKQEDNIIELYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISRDFVEAHGGTLTVESELGKGSRFVIRLK 481 >gi|51244806|ref|YP_064690.1| Ntr two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50875843|emb|CAG35683.1| probable two-component system sensor histidine kinase (Ntr family) [Desulfotalea psychrophila LSv54] Length = 406 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 29/242 (11%) Query: 1 MAKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------------- 42 + K S + + L + I H+I +P+ +I + L Sbjct: 162 LEKRYQVKYAQSEKMATVGTLAAGIAHEINNPLTSISGFAQGLQRRVNKLVGRVEDELVA 221 Query: 43 --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + ++ L F R V +GDI +++ + + + Sbjct: 222 DFDEYTETIITECLRCRDIVKTLLTFSRPLESTRSIVRLNQCVGDILFILQHHLKDQQNI 281 Query: 101 QVSWTGEKIDLSR-----ERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKIN 154 V T + + ++++NL + A ++ G I+ + N K Sbjct: 282 SVKTTLDPNLPVILGDESQLKQVIINLVINAFDAMKDGGEIEIITRKGMDNTVKLIFKDT 341 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ E +I D + I + ++ + + + L Sbjct: 342 GSGI-AEEILEKIFDPFFTTKQVGQGTGIGLSTCYGIVSNHQGTITALNNQEKGASFTVL 400 Query: 213 LE 214 L Sbjct: 401 LP 402 >gi|328473329|gb|EGF44177.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus 10329] Length = 600 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 61/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVMQL 52 + + + L L + + I H++ +P+ AI + E L + ++ + Sbjct: 357 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLSR 416 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VS 103 I + + +R + + + Sbjct: 417 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 476 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + + ++L+NL A ++ + +N+ + + NG Sbjct: 477 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L S L Sbjct: 537 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 590 >gi|294498816|ref|YP_003562516.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] gi|294348753|gb|ADE69082.1| two-component sensor histidine kinase [Bacillus megaterium QM B1551] Length = 475 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 63/220 (28%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFM---- 67 + H++ +P+ + +S+ L+ +++ ++ + + Sbjct: 249 FVADASHELRTPLSVMLSSINALEMQEEVTEDPFSKKLINNMKAEVKRMTSLVSDLLTLA 308 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 A D++ + + + + +D ++ +++ Sbjct: 309 RSDSNKVEKAMMPFDITDAVQKVMESVETLAISKHIDLQLDTPEKLVVTGDQERLTQLIY 368 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 L A G V I V +E I ++ G E +I D Sbjct: 369 ILLDNAIKYTTPHGSVNIQVVQHGSECILKVRDTGVGIHPDE-KDRIFDRFYRADKSRSR 427 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + H + + +K ++ E + + L Sbjct: 428 QMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTVRLP 467 >gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 660 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 68/231 (29%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + K S L + + + H+I +P+ AI +LL ++ ++E +Q+I ++ Sbjct: 280 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 339 Query: 58 MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +V + + + + V Sbjct: 340 ELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYEA 399 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+IL N A +G + + ++ G +K Sbjct: 400 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIE-MGYEKIDENIRLYVRDTGIGI-PEDKKD 457 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E D + A+L Sbjct: 458 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508 >gi|258405057|ref|YP_003197799.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797284|gb|ACV68221.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 736 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/244 (9%), Positives = 59/244 (24%), Gaps = 32/244 (13%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54 + + L ++ + L + HD + + I ELL E + I Sbjct: 347 QRELEKQLHNAQRLESIGRLAGGVAHDFNNLLSPILGYSELLMRGKISQDRFYECIGHIY 406 Query: 55 LSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 S + + +D + D+ +++ + +++ + Sbjct: 407 ESGKRGRELTRQLLAFGRKQNLALHGLDINQIIYDLLKLLRKTTRENIQIETTLNACSAG 466 Query: 111 LSRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 + +I + A ++P + + + Sbjct: 467 FLGDIGQIEQVIMNLTINAQDAMPNGGKLSIATDHIYADENFVENLPKMAPGHYVRLVIS 526 Query: 153 INGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ I D + + V + ++ + E S Sbjct: 527 DTGHGM-DDHTQEHIFDPFFSTKGKEKGSGLGLATVYGIIKQHGGFIFVESSPHKGTSFS 585 Query: 211 ALLE 214 Sbjct: 586 IYFP 589 >gi|218886320|ref|YP_002435641.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757274|gb|ACL08173.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 686 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 62/245 (25%), Gaps = 32/245 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49 M + + + +L + + + H++ P+ AI + L EV Sbjct: 422 MMDKDAQIIQAAKMKSLGEMSAGVAHELNQPLNAIRMGSDFLSLVIEQGLPVPQSRLHEV 481 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101 + I A + +R +V + + + + + +Q Sbjct: 482 ARDICTQVDRATEIINTLRSFGRKADTVIEPLDINRPTRAVLPLVERQFLLQNVEVKLDL 541 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----------ISVQDSKNENIFSL 151 ++ NL A ++ + + N + ++ Sbjct: 542 AEGLPPVRAHENRLQQVFFNLVTNARDAILDRARTDGGLRGVITIATRAEADGNAVVATV 601 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 NG QI + + + V + + + E + Sbjct: 602 SDNGAGI-PEALREQIFQPFFTTKVTGQGMGLGLSIVYGIVRDYGGDIRIESTEGKGTAF 660 Query: 210 SALLE 214 L Sbjct: 661 HVRLP 665 >gi|17229296|ref|NP_485844.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130894|dbj|BAB73503.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1287 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/251 (8%), Positives = 60/251 (23%), Gaps = 37/251 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL- 55 + + + + + + H++ SP+ AI +LL + ++ I Sbjct: 882 LQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQARRLSEAQTAKGLETIERN 941 Query: 56 ----------------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + I L + I+ ++ Sbjct: 942 AKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETAIENINLAAQAKEIDLTFFLENP 1001 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLP----------RGGKVTISVQDSKNENIF 149 + + S +++ NL A P + + + N Sbjct: 1002 ATENLPFQVSGDSERLQQVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQI 1061 Query: 150 SLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-ID 203 + G F + + + + + V L + + + Sbjct: 1062 QVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGE 1121 Query: 204 DHNVVLSALLE 214 + + L Sbjct: 1122 EQGSTFTVKLP 1132 >gi|16264910|ref|NP_437702.1| putative two-component sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|307312312|ref|ZP_07591947.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|15141049|emb|CAC49562.1| putative two-component sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|306899481|gb|EFN30112.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 1229 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 30/238 (12%) Query: 4 NICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54 L+ L A L + I H++ P+ AI + + + ++ + Sbjct: 988 QEELRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANSHACYRWLSADPVNIERAK 1047 Query: 55 LSSMSAII--------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 +++ I K G D + + + + Sbjct: 1048 ITTERVIRDAKSAADVVSRIRALFKQSVENRGILVLSDVISEACSLVAAEALRRRIRLNI 1107 Query: 101 QVSWT-GEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGN 156 V + ++L+NL ++ V + + +E + NGN Sbjct: 1108 DVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNKTVDVRMHQVDDEVRIEIGDNGN 1167 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 FPE +I + + + + + + RL E + L Sbjct: 1168 GVAFPE---RIFEPFFTTKENGMGMGLAISRSIVEAHGGRLWAEKNEPRGARFVFTLP 1222 >gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 797 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 24/233 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSL------ELLDEVGIEDEVMQLIRLSS 57 L M S + H++ +P+ ++ +L L +++Q+ ++ Sbjct: 559 TERRQLDRMK--DEFISTVSHELRTPLTSLRAALGLVTGGALATRPDKMKQMLQIAIANT 616 Query: 58 MSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------- 108 + + + +GS + + E ++E + + Sbjct: 617 DRLVRLVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRVESNDVR 676 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPE---K 163 + L NL A P G++T++ + + E F + G Sbjct: 677 VWADPDRILQALSNLISNAIKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENI 736 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + ++ R+ L Sbjct: 737 FERFQQVDASDTRAMGGTGLGLAICRSIIAQHGGRIWASSPPGKGATFHFTLP 789 >gi|256830038|ref|YP_003158766.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579214|gb|ACU90350.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 571 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/243 (8%), Positives = 65/243 (26%), Gaps = 28/243 (11%) Query: 1 MAKNICFNL-------SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------- 42 + ++ L S L ++ L + + H+I +P+ I+ L+ + Sbjct: 324 LQESDEQRLGAIHQMEHSQKLSSIGRLAAGVAHEINNPLAIINEKAGLMRDIMELRPDFP 383 Query: 43 -----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAV 96 + +++ + L F + +D L + + + Sbjct: 384 EKDKFSKQIESILRSVDRCRGITHRMLGFAKRMDVKIEILDLNAVLEETLGFLEREAQYR 443 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLK 152 + ++ + ++ + +I + + +L + S++ Sbjct: 444 NVELKRELSKNLPSIATDHGQIQQVFLNILNNALAAVPDGGRIVLSSWNVDDHYVAISIE 503 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG + + + + + ++ L Sbjct: 504 DNGCGMSEETAKNMFEPFFTTKKEKGTGLGMSITYGIVKRLGGEIKVKSKLNEGTTMTIL 563 Query: 213 LEK 215 L K Sbjct: 564 LPK 566 >gi|88861073|ref|ZP_01135708.1| osmolarity sensor protein [Pseudoalteromonas tunicata D2] gi|88817001|gb|EAR26821.1| osmolarity sensor protein [Pseudoalteromonas tunicata D2] Length = 433 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 11/222 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M+++I L L + + HD+ +P+ I + E++ ++ + + + +++ Sbjct: 214 MSRSIAALEEDRRL---LMAGVSHDLRTPLTRIRLATEMMSQNEDYLRDGIIADIEDMNA 270 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + D +G++ + + + Sbjct: 271 IIDQFIEYLRHHKLADLEPDDLNALVGEVVSAELQHLRIITTDLNEGIPNVPLSHVAIKR 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174 ++ N+ A V + +K S+ +G E F G++ Sbjct: 331 VVTNMIENALRYSDGDIHVVTGIDKAKKYAYISVLDHGPGIPENELERVFQPFTQGDLAR 390 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHN--VVLSALLE 214 + + + + + +++ + + +S LL+ Sbjct: 391 GSEGSGLGLAIIKRIVDMHNGKIVLKNRPEGGLEAKVSFLLK 432 >gi|116750047|ref|YP_846734.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116699111|gb|ABK18299.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 610 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 65/217 (29%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L S + H++ +P+ ++ + +L + + ++++ + + + + + Sbjct: 384 LISTVSHELKTPLTSVRLAAHVLLSEKLGPLNPKQVEILVAAREDSDRLYQIIENLLDIS 443 Query: 75 GSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + L +++ ++ + + + + E + Sbjct: 444 RIETDRSKIRLSPVDTEQMVLQATDEMRSAYMDRKVTLVLDLPEDVPPVLAEAFYLESVF 503 Query: 123 FM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTI 176 A P GG+VT+S + + FS++ G+ P F + G Sbjct: 504 ANLLSNALRHTPAGGRVTVSARRKGDAVQFSVEDTGSGIPAESLPHVFEKFYRGPGREER 563 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + + L Sbjct: 564 RDSGLGLAIAREIVEAHGGTIGVVSEPGKGARFTFTL 600 >gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] Length = 881 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + ++ + + H+I +P+ I E+L + + + +++ S+ Sbjct: 363 AKESAISANRAK--SVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEILGDIDTSSQ 420 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + + + + E I + + + Sbjct: 421 SLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATSKNIELHITMGEDIP 480 Query: 106 GEKIDLSRERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A + D + F + G Sbjct: 481 AKVMADDHRIKQVLTNLVGNAIKFTKEGYISTFVNYQADEHDHQGYLTFKVTDTGIGIDQ 540 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + L L S + Sbjct: 541 AKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGELTATSTKGLGSCFSFTIP 599 >gi|296532223|ref|ZP_06894972.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296267453|gb|EFH13329.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 463 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 68/240 (28%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 + + + + A + H++ +P+ +I +E L + + + ++ Sbjct: 223 LLSDRTRERAVERMRADFVTNASHELRTPLASIMGFIETLRGPARDDPDAQAHFLGIMAE 282 Query: 56 SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S ++ + + + + E + A D ++ Sbjct: 283 QSERMRRLIEGLLGLSRIELAEHQAPTERVDLAALARREAEAMAPILAARDVTLEQKLEE 342 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARF 160 I + ++ + + ++ G + + + + S+ +G Sbjct: 343 GAIAAPADAEQLAQVVRNLLENAVRHGREGGTVRLCVARTGNPRPGIMLSIADDGPGI-A 401 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + V + + ++ +LL E + L Sbjct: 402 REHIPRLTERFYRVDKARTRKDGGTGLGLAIVKHIVNRHRGQLLIESQEGEGATFKVWLP 461 >gi|251794821|ref|YP_003009552.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247542447|gb|ACS99465.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 460 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSM-DLVAL---LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQL 52 +A +I S+ L + S + H+I SP+ +I E L + + + Sbjct: 218 LADSINRMAHSLSQLETMRRDFVSNVSHEIQSPLTSIGGFAEALRSEDLTEGDRNRYVGI 277 Query: 53 IRLSSMSAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 I+ S + + T +D + + + Sbjct: 278 IKQESSRLSRLSENLLKLASLDSEHHPYKPVTYRLDRQLRDVVLSCEPTWLAKRLTVELL 337 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ +NL + P GK++ + + + + G+ E Sbjct: 338 MEETVIKADEDQLSQVWINLLTNSIKFTPEEGKISFQLSEKNGYAVVRISDTGSGIPEEE 397 Query: 163 ---KFTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + D + + + + V + + + E + V L Sbjct: 398 RDRVFERFYKIDPSRDRSEGGSGLGLSIVKKIIDIHGGTIEIEDAE-QGAVFVVRLP 453 >gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei DM98] Length = 927 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 544 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663 Query: 208 VLSALLE 214 ++ L Sbjct: 664 TVTVALP 670 >gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1427 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 67/251 (26%), Gaps = 40/251 (15%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + A L + + H+I +P+ + +++LL+ +E ++ Sbjct: 754 QRRADKEIKEAKEAAELANRAKSSFLAAMSHEIRTPLNGVVGTIDLLEHTRLESNQRDMV 813 Query: 54 RLSSMSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102 R + S++ + + ++ V + + ++ A + + Sbjct: 814 RTARDSSLTLMGIIDDVLDFSKIEAGKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELL 873 Query: 103 SWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISV----------QDSKNENI 148 + I +ILLNL A ++ + Sbjct: 874 VFCEPAIPEVMGDLVRLRQILLNLTGNAIKFSAGLKSGRQGRVEVSAALESVEEQDVKIR 933 Query: 149 FSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEII 202 S+K NG + ++ + L + E Sbjct: 934 LSVKDNGIGM-SADAQEKLFRPFVQAESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESR 992 Query: 203 DDHNVVLSALL 213 D S L Sbjct: 993 LDQGACFSVAL 1003 >gi|148657835|ref|YP_001278040.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569945|gb|ABQ92090.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 483 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 56/240 (23%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 + +L + L + I H++ +P+ I +L L + +E + + I ++ Sbjct: 227 TMAASLEQAEQARRRLIADIAHELRTPLSVIQGNLRALLDDVFPLEKKEIATIYDETLLL 286 Query: 61 IIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + +R Y VD + + + + Sbjct: 287 SRLVADLRELTLAEAGQLHLYRTPVDVTAIIARSVTLFAAHADEKRVTLQMDCAPDLPPV 346 Query: 113 ----RERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLAR 159 A++L NL A P + + + G Sbjct: 347 LADADRIAQVLNNLLSNALRHTPADGIVRIVASHAQQAGCATSDTDMICTRVIDTGPGIP 406 Query: 160 FPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + L + + E L Sbjct: 407 ADDLPHVFDRFWRADRGRARAQGGAGLGLAIARQLVLAHGGAIGVESEPGKGACFWFTLP 466 >gi|300023636|ref|YP_003756247.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525457|gb|ADJ23926.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 868 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 70/246 (28%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 K + + + + A+ L I HD + + AI +LL + ++ I+ Sbjct: 473 QKQLEDRVSQAQKMEAVGNLAGGIAHDFNNVLTAIIGFSDLLLQTHRPSDPSYKDIKNIQ 532 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GE 107 ++ A + + S+ L ++ + + R ++ Sbjct: 533 SAANRAANLVAGLLGFSRKQTQQVSVFDLNELTSDMRAMLKTQVREKIDLQFQAGRDLWY 592 Query: 108 KIDLSRERAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSL 151 S + +++LNL A ++P + + + Sbjct: 593 VRADSNQLYQVILNLARNARDAMPSGGKLTIRTQNVTERESQRMSPAAGFTPGEYVLLEI 652 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE +I + + + V + ++ + PE Sbjct: 653 SDTGTGM-SPEVMAKIFEPFFTTKGIGKGTGLGLASVYGIIKQSGGYIFPESELGKGTTF 711 Query: 210 SALLEK 215 L + Sbjct: 712 KIFLPR 717 >gi|94500954|ref|ZP_01307479.1| probable two-component sensor [Oceanobacter sp. RED65] gi|94426894|gb|EAT11877.1| probable two-component sensor [Oceanobacter sp. RED65] Length = 990 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 23/233 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + S L ++ L + + H+I +PI I + L + + ++ Sbjct: 741 EEELVHSERLASVGRLAAGVAHEIGNPITGIAMLAQDLKYESDDPTIHEIGEQVLEQTQR 800 Query: 63 -------RLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEK 108 + F + + ++ E V Sbjct: 801 VSRIVQSLVNFSHTGNHLQHQEQGPVDIRQCAQDAIDLLKLSEKEQGVMFENHCPDDAIV 860 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + ++ +NL A + P + +S + ++ + G PEK +I Sbjct: 861 LGDEQRLQQVFVNLLSNARDASPDNTCINVSAELEQHTVTIRVVDEGEGI-APEKIERIF 919 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 920 EPFFTTKEVGKGTGLGLALVYSIIEEHYGQISIQSPVDKTTQTGTAVIINLPR 972 >gi|260439185|ref|ZP_05793001.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876] gi|292808387|gb|EFF67592.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876] Length = 347 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + E + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G + + ++ K+ +F L+ G F + + + + + Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|312111458|ref|YP_003989774.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311216559|gb|ADP75163.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 442 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 56/219 (25%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL-- 69 + H++ +P+ +SLE+++ + +V ++ + + Sbjct: 220 FVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVFDDMKDELRRMTKLINDLLWLA 279 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + L + + + + + +++ Sbjct: 280 RSDANAIELTKEWFLLPPVIDELIRKCRSLAEQKHIKFVTNIQKDMAIYGDKERIIQLIF 339 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175 L A G++ I+V+ + + G + F + + Sbjct: 340 ILLDNAVKYNTENGQIKIAVERDRKNVNIEISDTGIGIPVEQQALIFERFYRADPSRSRK 399 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + + L Sbjct: 400 QQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438 >gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 652 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 53/246 (21%), Gaps = 34/246 (13%) Query: 3 KNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 KN + A SR + H+I +P+ I L+L++ + + + Sbjct: 250 KNALERVEHEKAKAETASRTKSEFLANMSHEIRTPLNGIMGMLQLMESETQTPKQGEYVN 309 Query: 55 LSSMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + ++ + + + + Sbjct: 310 AAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPADELKHVFELFEVTSRHSGVNLKL 369 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKI 153 ++ +IL N+ A G ++ +F+++ Sbjct: 370 KLPPELPLTVTGDPARLQQILTNIVGNALKFTHEGHVLITAQLLPRSTPGNCHILFTVED 429 Query: 154 NGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G + + L + E + Sbjct: 430 TGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLSICKRLTELMGGTIAVESNVEQGTT 489 Query: 209 LSALLE 214 + Sbjct: 490 FYISIP 495 >gi|126736534|ref|ZP_01752275.1| periplasmic sensor signal transduction histidine kinase [Roseobacter sp. CCS2] gi|126714072|gb|EBA10942.1| periplasmic sensor signal transduction histidine kinase [Roseobacter sp. CCS2] Length = 592 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 + + + + L AL + + + H+ P+ A+ + E L+ + + + R Sbjct: 354 LERTQTDLIQAGKLSALGQMSAALSHEFNQPLAAVKSYADNAAEFLERDRLPEAQDNISR 413 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104 +S M+ + L + L + + ++ R+ Sbjct: 414 ISKMADRMATISAHLRNFARRPQQATGPLLFNAVIQDALAVIEMRLTSEGGQVAYTPPEA 473 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++++NL A ++ + +++ + + ++ G + Sbjct: 474 EIWVVGGHVRLQQVIVNLINNALDAMEDQSQPVVTLTLADTTLL--VRDTGPGIEPTKVR 531 Query: 165 TQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + L D V S L+ Sbjct: 532 N-IFDPFFTTKAPGKGLGLGLSISYNIVSDFGGTLSAANHPDGGAVFSVTLQ 582 >gi|307152859|ref|YP_003888243.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983087|gb|ADN14968.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 477 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 75/238 (31%), Gaps = 26/238 (10%) Query: 1 MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEV 49 +A + +S + L ++ + + H++ +P+ + +LE L+ E + D Sbjct: 238 LADELN-RMSEL-LASVDRKRRTFLANVSHELRTPVSNVKVTLEALERGAISEPELCDRF 295 Query: 50 MQLIRLSSMSAIIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 +Q + ++ + + S+ SLI + F K Sbjct: 296 IQTAQQEINRLSRLVQDLLYLGSVEAGVTPLEKQSVSIRSLINRAVQTMELRTFPLRLKI 355 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + S + LLN+ A K+ IS + N+ + + +G Sbjct: 356 DNDIPDLQLQVDSERLLQALLNILENAIKYSRYPPKIAISGYIAGNQMLIKITDSGMGIS 415 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + + L + ++ + + ++ L Sbjct: 416 QEDLSHIFEEFYRSDSSRHSEGTGLGLAISKRLVELHGGKITADSVVGQGTTITICLP 473 >gi|298374757|ref|ZP_06984715.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298269125|gb|EFI10780.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 656 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI +++ + + +L + + Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489 Query: 62 IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + DI +I + + +++ Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549 Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L NL A + G + ++ E F + G + ++ Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D V + + L + R+ S + + Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656 >gi|228906048|ref|ZP_04069938.1| hypothetical protein bthur0013_2330 [Bacillus thuringiensis IBL 200] gi|228853595|gb|EEM98362.1| hypothetical protein bthur0013_2330 [Bacillus thuringiensis IBL 200] Length = 314 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 72 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYI 131 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G V + + ++ E + G + Sbjct: 192 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E + + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 308 >gi|262199542|ref|YP_003270751.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262082889|gb|ACY18858.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 688 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 56/237 (23%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDE-------------V 43 + ++ ++ + L + + H+I +P+ + ++E LLD+ Sbjct: 268 LLEDRLRRKQKLEALGTLAAGVAHEINNPLTWLMGNVECLKALLDDHASMLASSMTDELG 327 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQ 101 I E+ F R G VD + L + E + Sbjct: 328 EIVVEMRDGTERIRRIVAGLKPFTRSDEDTFGPVDLIQVLDTAVDLAGNEIRHRARLVRR 387 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGN 156 + + +NL + A ++ G + Q ++ G Sbjct: 388 IRKVPPVYGNQARLTQAFVNLLVNAAQAISHGHATDNRIRIVTSQREDGRVCVIVEDTGV 447 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + L Sbjct: 448 GIPATVIDRIFEPFFTTRAPERTGLGLSICHSIIDSCGGEIEVTSSPGAGTRFCVYL 504 >gi|254471778|ref|ZP_05085179.1| phosphate regulon sensor protein PhoR [Pseudovibrio sp. JE062] gi|211958980|gb|EEA94179.1| phosphate regulon sensor protein PhoR [Pseudovibrio sp. JE062] Length = 455 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 65/240 (27%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 +++ + A + H++ +P+ ++ +E L + +D+ + ++ + Sbjct: 206 RDLTEARRLERMRADFVANASHELRTPLASLTGFIETLQGPAKGDPKAQDQFLGIMLDQA 265 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSWT 105 + + V +I Sbjct: 266 ERMRRLIDDLLSLSRIEMKVHVQPETLVDLGLIMRHSVESLLPVAKENGVELNVTVPDEP 325 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARF 160 E + E ++ NL A GG+V ++ + I ++ G Sbjct: 326 AEIRGENDELVQVFNNLVENALKYGSSGGRVDVTCRPDPDSTETPHWIAEVRDYGPGI-D 384 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + + V + ++ RL E D + Sbjct: 385 PEHLPRLTERFYRVDVVTSRQMKGTGLGLAIVKHILTRHRARLEIESKPDEGACFRVFIP 444 >gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1391 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/252 (9%), Positives = 61/252 (24%), Gaps = 41/252 (16%) Query: 4 NICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55 +L + + + H++ +P+ I +LL E E ++ I Sbjct: 982 QEQTAREQAELANRMKDEFLAVLSHELRTPLNPILGWCKLLQTRPFEPARAMEALRTIER 1041 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 ++ + ++ + L I R+ ++ ++ Sbjct: 1042 NAQLQVQLIEDLLDFSKIVQGKLPLQIAPVQLSSIITAALESVRLAAEAKTIQLQTCLDQ 1101 Query: 116 A------------KILLNLFMVAHASLP---------------RGGKVTISVQDSKNENI 148 +++ NL A P G + ++ + Sbjct: 1102 HPILVWGDANRLQQVVWNLLSNAIKFTPEGGQVEVRLESGEGSPGKRAHPMPVNTSSYAQ 1161 Query: 149 FSLKINGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 + G + DG + + V + + R+ E Sbjct: 1162 ICVIDTGKGIASDFLPHVFDYFRQEDGAMTRRYGGLGLGLAIVKQIVEMHGGRIWAESPG 1221 Query: 204 -DHNVVLSALLE 214 + L Sbjct: 1222 LGEGATFTVRLP 1233 >gi|187918616|ref|YP_001884181.1| nitrogen regulation protein NtrB [Borrelia hermsii DAH] gi|119861464|gb|AAX17259.1| nitrogen regulation protein NtrB [Borrelia hermsii DAH] Length = 386 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 77/235 (32%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSS 57 + L A I H+I +P+GAI +L+LL + + ++ Sbjct: 138 KHKEELFRRAEALAAFTRHARNIAHEIKNPLGAIDINLQLLKKELDRQGIKSIKANNYFK 197 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + + + +V + + + + + + +V + + I Sbjct: 198 IIKEEINRMDKTVTDFLLTVRPIKIIPEKKDITDIIKSVYNLLNPELRNKDIKFILNLKK 257 Query: 115 ----------RAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++++N+ A +L + ++ IS+ +++ + ++K NGN Sbjct: 258 VSLVLIDEKLIRQVIINIVKNAEEALLESNKKIKRIEISIHENEEKIYINIKDNGNGI-K 316 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E I + I + E+ + E + + L K Sbjct: 317 NETKDDIFKPQFSTKESGSGIGLTISYKIVKEHGGEIFVESKEMKGTSFTITLPK 371 >gi|150010361|ref|YP_001305104.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149938785|gb|ABR45482.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 656 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI +++ + + +L + + Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489 Query: 62 IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + DI +I + + +++ Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549 Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L NL A + G + ++ E F + G + ++ Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D V + + L + R+ S + + Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656 >gi|46579829|ref|YP_010637.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|120602702|ref|YP_967102.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio vulgaris DP4] gi|46449244|gb|AAS95896.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|120562931|gb|ABM28675.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio vulgaris DP4] gi|311234166|gb|ADP87020.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio vulgaris RCH1] Length = 579 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 20/230 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50 + KN+ + L AL L + + H+I +P+ A+ + + ++ Sbjct: 338 LEKNLS---EAEKLAALGTLAAGVAHEIRNPLSALRGFAQYFAKKLVGRQPDETYAQTMV 394 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109 + + L R +V + DI + D + ++VS + + Sbjct: 395 READRLNRVITDLLYLSRPRAMDARAVSLGQLVADIGNLVRFDLEKRNIALKVSLGPDIV 454 Query: 110 DLSRER-AKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKF 164 + + +LNL + + +L + + +G ++ Sbjct: 455 WADEDALKQAVLNLVLNSIDALEGLATGEREIHVSSAQGDGGTWVFVGDSGPGMSALQRE 514 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V E+ R + +S Sbjct: 515 QAF-EPFFTTKKKGTGLGLALVHKTMREHDGRAQIDSEMGRGTTVSLFFP 563 >gi|332526607|ref|ZP_08402714.1| histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332110870|gb|EGJ11047.1| histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 601 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 55/219 (25%), Gaps = 22/219 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + I H++ +P+ +I EL++ + L A + + Sbjct: 366 SEFLAAISHELRTPLTSIRGFAELMEHRLDNPKFRDQAGLIRKGAEYLNQLLGEILDLAK 425 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119 + V+ + + + + +IL Sbjct: 426 VEAGSMTLSSEPVNLGSLVQGTVDFYALTAAGKGLTLAVEIDPEAPQVIVADGLRVKQIL 485 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDG--NVES 174 NL A P G+V + V+ + + ++ G F + G V Sbjct: 486 NNLLSNAIKFTPA-GRVDVMVERLGDRVLMHVEDTGPGIAPELHETIFERFRQGSARVSY 544 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + LA L + L Sbjct: 545 EHGGTGLGLALSRALAQLMGGTLTLASEPGRGARFTLAL 583 >gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4] Length = 984 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L + L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLDSQLGQGSCFWFTLP 690 >gi|323490237|ref|ZP_08095453.1| integral membrane sensor signal transduction histidine kinase [Planococcus donghaensis MPA1U2] gi|323396077|gb|EGA88907.1| integral membrane sensor signal transduction histidine kinase [Planococcus donghaensis MPA1U2] Length = 425 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 69/223 (30%), Gaps = 13/223 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS 59 N M+ V+ + + H++ +P+ +I ++L+ E + E +++ S Sbjct: 196 NSLLKHEKMETVSHFAAAVSHELRNPLQSIKGFVQLMKEYEYSRDKQIEFHEMVLNEIES 255 Query: 60 AIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 A + + T S + L + ++ E + Sbjct: 256 AEDLIDDYLVYAKPTYGQLEASNVSCEVQHVLKIMMPYANGKGIEMHITEMDRDAETLMD 315 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + ++N+ ++P GG + I+V+ + + G E ++ + Sbjct: 316 RHKFQQAIVNIIRNGIEAMPNGGMLAIAVKSTPAIVSIHVTDEGIGMTKEEVR-RLGEPY 374 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + + + + + D Sbjct: 375 FSSKIKGTGLGMMVTYSIVSQMNGHIFVDSEKDKGTEFRLEFP 417 >gi|290512340|ref|ZP_06551707.1| sensor histidine kinase/response regulator [Klebsiella sp. 1_1_55] gi|289775335|gb|EFD83336.1| sensor histidine kinase/response regulator [Klebsiella sp. 1_1_55] Length = 761 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L M V L + HD + + I SLEL++ + + ++ Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + +V L ++ +++ + +++ + Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLCELMRHSLPATLSLEIEAQSPAWPAWID 506 Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL M A ++ +VT S ++ + +G+ Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621 >gi|284047510|ref|YP_003397849.1| histidine kinase [Acidaminococcus fermentans DSM 20731] gi|283951731|gb|ADB46534.1| histidine kinase [Acidaminococcus fermentans DSM 20731] Length = 576 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 70/234 (29%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I L + + H++ +P+ +I EL+ + I + + + Sbjct: 343 QDITEAREREQLRRDFTANVTHELKTPLTSISGFAELMAAGMYQKKEDITHFGQLIRKEA 402 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 + + + L+ ++L + +I+ + E Sbjct: 403 ARLLEMINSIIFLSRIEEVPAEALQEEVPLGGLIQSVVEFMDPFCKDRQVTIHCHLTEDK 462 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ +NL GG V +++ ++ + ++K G + ++ Sbjct: 463 VRGSSSMLREMAMNLIDNGVKYNRPGGHVYVTMGRDGDQVVLTVKDTGIGI-PEDVQERV 521 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + +++ ++ + + L + Sbjct: 522 FERFYRVEGSRSKQSGGSGLGLSIVKHIVEQHRGKIRLTSRVNEGTSIEVQLPR 575 >gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580] gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580] Length = 593 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 76/237 (32%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + + E+ Q+I Sbjct: 353 MTEERRL----DKLRKDFIANVSHELRTPISMLQGYSEAIVDDIASSEEEKKEIAQVIYD 408 Query: 56 SSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107 S+ + + A + +V+ + E+V F V ++ + Sbjct: 409 ESLRMGRLVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNITLSHNLDL 468 Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + ++L NL A GG V + VQ +++ ++K +G+ + Sbjct: 469 HEAKFVFDPDKMEQVLTNLIDNAIRHTNAGGTVHVDVQSAESGLKIAVKDSGSGIPEEDL 528 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + + + + + + + + Sbjct: 529 PFIFERFYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFTFYIPR 585 >gi|89099786|ref|ZP_01172659.1| hypothetical protein B14911_21793 [Bacillus sp. NRRL B-14911] gi|89085533|gb|EAR64661.1| hypothetical protein B14911_21793 [Bacillus sp. NRRL B-14911] Length = 1175 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 69/226 (30%), Gaps = 17/226 (7%) Query: 3 KNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 K L ++ V L + I H+I +P+ ++ L+L+ + G ++ + + Sbjct: 950 KASEAMLQKSEMLSAVGQLAAGIVHEIRNPLTSLKGFLQLMMQTGSYNK--EYTEVMMSE 1007 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEK 108 + ++ L ++ +VI+D V + Sbjct: 1008 FGRLEAIIDEFLVLAKPKAAVYDLVNVSKVIQDVCVLLDTQAIMQNISITAVHQDALPKI 1067 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +E ++ +N+ A ++ GG + I + + G + ++ Sbjct: 1068 RGNEKELKQVFINMVKNAIEAMENGGTILIETGMEGKNLLVKISDQGKGIPEKQLN-KMG 1126 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +K L I+ + Sbjct: 1127 EPFYTTKEKGTGLGVMVSFRIIENHKGTLNYASIEGKGTTAEIRIP 1172 >gi|116748069|ref|YP_844756.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697133|gb|ABK16321.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 753 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 26/238 (10%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 KN+ L +S L +L L + + H+I +PIG + +L+ E +E ++ I Sbjct: 499 RKNLERQLINSEKLASLGTLAAGVAHEINNPIGIMLGFCDLMLERMDPGTMEYNDLKTIE 558 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTG 106 + ++ + + + L + Q + + + Sbjct: 559 RHGLHCKSIVERLLSFARMSEEAEDRCDLNENIQEVVSVVKHTLDINRIRLETALASDLP 618 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKF 164 SR ++LLNL A ++ G ++ + + + G E Sbjct: 619 PVNIDSRGLQQVLLNLVGNAIHAMDGDGVLRIISRTGRREEDVELIVADTGCGI-RKELI 677 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH------NVVLSALLE 214 +I D + + + + + + + V + L+ Sbjct: 678 AKIFDPFFTTKKVGEGTGLGLSVSYGIVSKYGGTVECASHAEEDGPGETGTVFTVTLK 735 >gi|323692079|ref|ZP_08106326.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323503879|gb|EGB19694.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 466 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 72/239 (30%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 M++N+ L ++ + S H++ +PI +I +ELL+ + ++ Sbjct: 224 MSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGMALNEETTHDFLK 283 Query: 52 LIRLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 I+ +M + + + + + + + + Sbjct: 284 RIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHK 343 Query: 103 SWTGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + I R+ ++ +NL A G++ + + + + +++ +G Sbjct: 344 QFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLTVRDSGVGI-PQ 402 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + V + + + E + L Sbjct: 403 ESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLP 461 >gi|322383664|ref|ZP_08057415.1| two-component sensor histidine kinase YclJ-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151876|gb|EFX44819.1| two-component sensor histidine kinase YclJ-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 425 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 MA I + L S I H++ +P+ +I E L + + +I Sbjct: 193 MADEIQ---KNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQDPEETRLGINIISK 249 Query: 56 SSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + I ++ + + +G + VQ Sbjct: 250 ETDRLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEE 309 Query: 105 TGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 I +IL+N A P+GG +T+S++ E + +++ G Sbjct: 310 EPIHIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEIL 369 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L ++ E + ++ Sbjct: 370 KHVTEKFFKGTSRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 420 >gi|307311785|ref|ZP_07591424.1| histidine kinase [Sinorhizobium meliloti BL225C] gi|306899526|gb|EFN30156.1| histidine kinase [Sinorhizobium meliloti BL225C] Length = 633 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 24/223 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLI------------RLSSM 58 L + I H++ P+GAI + E +L+ + +++Q I + Sbjct: 407 AGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGDIIDR 466 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAK 117 + K + + D + I V S G + Sbjct: 467 MRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRVHVQQ 526 Query: 118 ILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++LNL + A ++ R ++ + + S+ G+ + I D Sbjct: 527 VILNLAINAMDAMLQAPTAERNLMFQTTMVERNEKVEVSISDTGSGIPSDKLSN-IFDAF 585 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ +L + V +L Sbjct: 586 YTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLP 628 >gi|307322353|ref|ZP_07601714.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306892000|gb|EFN22825.1| histidine kinase [Sinorhizobium meliloti AK83] Length = 633 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 24/223 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLI------------RLSSM 58 L + I H++ P+GAI + E +L+ + +++Q I + Sbjct: 407 AGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGDIIDR 466 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAK 117 + K + + D + I V S G + Sbjct: 467 MRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRVHVQQ 526 Query: 118 ILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++LNL + A ++ R ++ + + S+ G+ + I D Sbjct: 527 VILNLAINAMDAMLQAPTAERNLMFQTTMVERNEKVEVSISDTGSGIPSDKLSN-IFDAF 585 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ +L + V +L Sbjct: 586 YTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLP 628 >gi|258592608|emb|CBE68917.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 441 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 69/224 (30%), Gaps = 20/224 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSA 60 L AL L + + H+I +P+G I + +EL E + +++I + A Sbjct: 215 QVEKLSALGTLSAGLAHEINNPLGIITSRVELALMDAQETEIPKQFIDDLKVIEKHAQRA 274 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + + + ++ + Sbjct: 275 ARVARGLLSFSRPATGQRLSLDMNGVIEESLLLIERQLEKEQIVLERRLAPSLPKVKGNV 334 Query: 116 AK---ILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ +LLNLF A ++ GG++ + + + G+ QI D Sbjct: 335 SQLEEVLLNLFTNAREAMTAGGRLRVESRLGADDRTVQILVADTGDGV-PEMLVQQIFDP 393 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+ RL + L Sbjct: 394 FFTTKQNGTGLGLSISYGIVKEHGGRLDVRSEAGNGTTFVMTLP 437 >gi|255012375|ref|ZP_05284501.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 656 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ AI +++ + + +L + + Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489 Query: 62 IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + DI +I + + +++ Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549 Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++L NL A + G + ++ E F + G + ++ Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607 Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D V + + L + R+ S + + Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656 >gi|254416130|ref|ZP_05029885.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177063|gb|EDX72072.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 477 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 70/237 (29%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ L+ + + S + H++ +P+ + L+ L + E + Sbjct: 238 LAQTFDNMLNRLFEAWEQQRQFVSNVSHELRTPLTIVSGYLQSTLRRGKNLTPPQQEALG 297 Query: 52 LIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + L+ + + ++ ++ + ++ Sbjct: 298 IAAAEADRTVQLLQDLLDLARVDHGRMHFHLELFVLNDLVAEVVEMAVQYSNRVIDSDIN 357 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159 ++ R+R ++LLNL A VT+ + + + G + Sbjct: 358 RELIEVLADRDRLKQVLLNLIDNAVKYSDPDQPVTVKLDKPGEQVRIQVCDRGQGIPLAQ 417 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + + V L ++ V + LL Sbjct: 418 QSRIFERFYRGDENRARSPGGTGLGLSIVKTLVEGMGGQVSVRSQLSQGSVFTVLLP 474 >gi|167464605|ref|ZP_02329694.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 473 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 MA I + L S I H++ +P+ +I E L + + +I Sbjct: 241 MADEIQ---KNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQDPEETRLGINIISK 297 Query: 56 SSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + I ++ + + +G + VQ Sbjct: 298 ETDRLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEE 357 Query: 105 TGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 I +IL+N A P+GG +T+S++ E + +++ G Sbjct: 358 EPIHIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEIL 417 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L ++ E + ++ Sbjct: 418 KHVTEKFFKGTSRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 468 >gi|160939833|ref|ZP_02087180.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC BAA-613] gi|158437267|gb|EDP15032.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC BAA-613] Length = 465 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 82/239 (34%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50 M+K++ LS ++ + S H++ +PI +I ELL+ I+D+ + Sbjct: 223 MSKDVKEYLSQIEKEKQIRQEFFSNASHELKTPITSIQGYAELLESGMIQDDGLKLDFAK 282 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSW 104 ++ + ++ + + ++ + + + I ++++ + +V + Sbjct: 283 RIKKEAAGMTGLINDILMISRLESMDAEVMFSDVRISVLLQEIMDSLKPLAASCQVFLHV 342 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + ++ A GG+V I+V + ++ + +K NG Sbjct: 343 DCKPLCIRANLQQMKELFTNLATNAIKYNRPGGQVWITVGEQGDDMLVRVKDNGVGI-PK 401 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + V + + + D + + Sbjct: 402 ESLDRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVNFYHGTIHVTSELDKGTEFTVTIP 460 >gi|148243509|ref|YP_001228666.1| two-component system sensor histidine kinase [Synechococcus sp. RCC307] gi|147851819|emb|CAK29313.1| Two-component system sensor histidine kinase [Synechococcus sp. RCC307] Length = 484 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 65/238 (27%), Gaps = 25/238 (10%) Query: 3 KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 +S ++ A S I H+ +P+ + ++ L ++ + + ++ Sbjct: 245 SEFNHMVSRLEQAATNQKQFASTISHEFRTPLTVVSGFIQSVLNRADDLKPQFRDALTVA 304 Query: 57 SMSAIIRLKFMR-------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + A+ + + ++ + + ++ Sbjct: 305 NQEALRLNRMLSDLLDLSRADNRQLRILQEPFAIKAACLQSLKLARAAFTNPITDQLAQV 364 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA----- 158 E I + L NL A + + +Q E ++ G Sbjct: 365 EEVEAIGDHDRLVQCLENLIGNAVKYSEPDRPIALDLQVDNFEVAVTVVDQGQGIANDQL 424 Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 R E+F + + S + V +L + + + L++ Sbjct: 425 ERIFERFQRAEGVTLRQGQSSSGLGLSIVKMLVDGMGGSITVHSVPGEGSRFTIRLKR 482 >gi|172062322|ref|YP_001809973.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171994839|gb|ACB65757.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1034 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 64/244 (26%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + + + D + L + + H+I +P+ I +LELL+ ++ +R Sbjct: 483 LVQQLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSALDATQHGRVRT 541 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99 SA L + ++ + + IE + + + + Sbjct: 542 LHASATSLLALVSDILDFSKIEAGAMSVESIEFDVIETVERELHAFATIAKAKGLQLFCE 601 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155 + T A++L NL A G + ++ G Sbjct: 602 IHACGTQRMRGDPTRLAQVLRNLLSNALKFTAVGRVTVRVAVVVEGHDAPELSIEVEDTG 661 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + L R+ E Sbjct: 662 IGIGAEHRRKLFKAFSQVDASITRRYGGTGLGLALCDRLVAAMAGRIAVESEAGVGSRFK 721 Query: 211 ALLE 214 LL Sbjct: 722 VLLP 725 >gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 742 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 31/243 (12%) Query: 3 KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQ 51 K L +A + + I H++ +P+ +I +LL E + ++ ++ Sbjct: 480 KKAVEKLIQEKQIAEIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFGELNEKQLR 539 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKR 99 S S L + + + L E + + Sbjct: 540 YAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLAPIADRKSIQ 599 Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 +++ +L + A+I+ NL A V + + ++ ++ G Sbjct: 600 IEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNVGARMKGDKVEITVTDIGA 659 Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + ++ + Y V + ++ + + + Sbjct: 660 GIKPEDQHKLFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRSVPGEGSTFAF 719 Query: 212 LLE 214 + Sbjct: 720 AIP 722 >gi|310817854|ref|YP_003950212.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309390926|gb|ADO68385.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 508 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 58/241 (24%), Gaps = 32/241 (13%) Query: 5 ICFNLSSMDLVALLC----------SRICHDIISPIGAIHNSLELL------DEVGIEDE 48 L+ ++ A L + + HD+ +P+ A+ S L Sbjct: 251 REMALTFNEMAATLAQRQEEQLTFLAGVAHDLRNPLAALKMSTALAGSGRNEASPERIQR 310 Query: 49 VMQLIRLSSMSAIIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 ++ L+R + + A + + Sbjct: 311 MLTLVRRQVARLDRMVGDLLDAARIEAGRLELHIEERDAREMARSVVELFEASGQGRELR 370 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++L NL A P G V ++V ++E I ++ G Sbjct: 371 LSVPEVPVPLRCDGTRMEQVLNNLVSNALKYSPTGTSVDVTVSRQQDEAILTVTDRGIGL 430 Query: 159 RFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E + + + + + + R+ E L Sbjct: 431 -SAEAKHHLFSPFMRANNARDCAPGAGLGLSVARRIVEAHGGRIEVESQPGQGATFRVRL 489 Query: 214 E 214 Sbjct: 490 P 490 >gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 615 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 KNI S L+ S I H++ +P+ I +++LL + +D+ ++L Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405 Query: 53 IRLSSMSAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 I+ + + + + + V + + Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFD 465 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E+ ++ + KI + + GG + ++V+D +K G Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNAGGNIFVNVKDCGENVYVHVKDTGVGIPS 525 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + V + + + L Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTIKSELGQGTEFIIKLP 584 >gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 14] Length = 927 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 543 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 544 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663 Query: 208 VLSALLE 214 ++ L Sbjct: 664 TVTVALP 670 >gi|153007204|ref|YP_001381529.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030777|gb|ABS28545.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 800 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 65/247 (26%), Gaps = 36/247 (14%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL--------------------- 37 + + L+ + L ++ L + + H++ +P+ + +L Sbjct: 411 TRQLQARLALADRLASVGTLAAGVAHELNTPLAYVSANLAFVSDGVERLGRLLDGAPEAG 470 Query: 38 -ELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 EL + + + + F R G V+ LG + + Sbjct: 471 AELARQVADAARDAREGAERMRVIVRDLRTFSRGQDDDEGPVELASVLGSCLNMAAAELC 530 Query: 96 VDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENI 148 RV S + ++ LNL + A ++P R + Sbjct: 531 RRARVTRSLSPVPPVRGNAARLGQVFLNLLVNAAQAIPEGARERHEVRVTTRTLPDGLVA 590 Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHN 206 ++ G E ++ D + + + + E Sbjct: 591 AEVRDTGCGI-PAEHLARVFDPFFTTKPPGVGTGLGLAICHGIVTALGGAIEVESAPGAG 649 Query: 207 VVLSALL 213 LL Sbjct: 650 TTFRVLL 656 >gi|115380068|ref|ZP_01467111.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1] gi|310822011|ref|YP_003954369.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115362927|gb|EAU62119.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1] gi|309395083|gb|ADO72542.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 530 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 69/237 (29%), Gaps = 25/237 (10%) Query: 2 AKNICFNLS-SMDLVA--LLCSRICHDIISPIGAIHNSL---------------ELLDEV 43 + L + + A +L + + H+I +P+ + ++L ++ + Sbjct: 277 QRENELRLRLNERMAAIGMLAAGVAHEINNPLAFVSSNLNFIDTELRRPPPSAVDMAELK 336 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + R T VD L + + + R+ Sbjct: 337 EAISDAREGAERMRIIVQSLKALSRGDSITTQPVDLHEVLENSVHLAWSRLRSKGRLVRD 396 Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLAR 159 + S + +++ +NL + A +L + G + S + + + NG Sbjct: 397 YGELSPVLGNSVQLSQVFVNLIINAAQALRKTGGEIRLVTRMHSPHRALVEVHDNGCGI- 455 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + L D LL Sbjct: 456 AAEHLDRIFEPFFTTKPVGEGTGLGLSISHDIIRGLGGELSVSSTLDVGTTFRILLP 512 >gi|114707286|ref|ZP_01440183.1| sensor kinase [Fulvimarina pelagi HTCC2506] gi|114537167|gb|EAU40294.1| sensor kinase [Fulvimarina pelagi HTCC2506] Length = 841 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 69/248 (27%), Gaps = 34/248 (13%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQ 51 M + + A+ L I HD + + I S++ L + + Sbjct: 446 MTDQRALEEQFAKAQKMQAVGNLAGGIAHDFNNVLTVITASVDFLLMNQKPGDPSFQDLL 505 Query: 52 LIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 LI+ S+ A ++ + + D + L + + I +R Sbjct: 506 LIKQSANRAASLVRQLLAYSRRQTMRPKMLNLTDVVADLDLLLKRIAGDKTKLERRHARN 565 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIF 149 + + +++ NL A ++P S + + + Sbjct: 566 LWPVMADIGQFEQVITNLVGNARDAMPNGGTIKIETRNVEEGHARVFGYSEMPAADYVLV 625 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + G + +I + + + V + ++ + E + Sbjct: 626 EVSDTGTGM-PADVAERIFEPFFTTKEIGKGTGLGLSMVYGIIKQSNGFIYVESTEGEGT 684 Query: 208 VLSALLEK 215 V L + Sbjct: 685 VFRIFLPR 692 >gi|15602178|ref|NP_245250.1| hypothetical protein PM0313 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720549|gb|AAK02397.1| ArcB [Pasteurella multocida subsp. multocida str. Pm70] Length = 618 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 63/237 (26%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + L +++ + L + I H++ +P+ I +L + + + ++ Sbjct: 105 EKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIH 164 Query: 58 MSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---- 102 +SAI +V+ L DI V K Sbjct: 165 VSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTD 224 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++IL NL A G + S+ + FS+ G Sbjct: 225 KNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPAN 284 Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + I +A L + +L Sbjct: 285 ELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLP 341 >gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016] gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 881 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + ++ + + H+I +P+ I E+L + + + +++ S+ Sbjct: 363 AKESAISANRAK--SVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEILGDIDTSSQ 420 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + + + + E I + + + Sbjct: 421 SLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATSKNIELHITMGEDIP 480 Query: 106 GEKIDLSRERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A + D + F + G Sbjct: 481 AKVMADDHRIKQVLTNLVGNAIKFTKEGYISTFVNYQADEHDHQGYLTFKVTDTGIGIDQ 540 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + L L S + Sbjct: 541 AKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGELTATSTKGLGSCFSFTIP 599 >gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231] gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231] Length = 831 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 61/236 (25%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + H++ +P+ I LEL+ M+ IR Sbjct: 441 LRKTAADLSEANRRKSEFLATLGHELRNPLAPIRMGLELMKMAADSPAKMEEIRGMMERQ 500 Query: 61 IIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++++ + + + I++ Sbjct: 501 VLQMVRLIDDLLDVSRITRGKLQLRICRVAVANVVQNAVEMARPFIDEADHQLTVAVPPQ 560 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 A++ NL + P GG + +S + ++ + +++ NG + Sbjct: 561 PIHLDADPNRLAQVFSNLLNNSAKYTPEGGHIWLSAERQGSDVVVTIRDNGIGIPADMQT 620 Query: 165 TQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + I V L + R+ L Sbjct: 621 SIFEMFTQVDRPLEQGYTGLGIGLTLVKQLVEMHGGRIDARSEGSGRGSAFEVRLP 676 >gi|186681380|ref|YP_001864576.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186463832|gb|ACC79633.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1177 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51 + L I H+ +PI I LE + Sbjct: 527 RQQAERLLELDKQKTEFFQNISHEFRTPITLIQGPLESAVAAGEGLSYSQSAIALRNSRR 586 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108 L+RL + ++ D + + I + + Q+ Sbjct: 587 LLRLVNQLLDLQRLDAGRMQPSFHPCDLVEFVSQIVESFRPYCEKKRLHLATQLDECSPV 646 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 + K++ NL A P GG + + ++ ++ I ++ G + Sbjct: 647 YLDMEKFDKVVYNLLSNAMKFTPEGGTIGVRLKSEQDRCILQVQDTGIGIVKEQIPHLFE 706 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +G+ + + + V L + + E + S L Sbjct: 707 RFRQAEGSANRSYEGSGLGLALVKELVELHGGHVTVESVYGQGTTFSLWL 756 >gi|291562929|emb|CBL41745.1| Signal transduction histidine kinase [butyrate-producing bacterium SS3/4] Length = 468 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 57/216 (26%), Gaps = 20/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------R 68 + + HD SP+ +I LE + + + D+ + ++ + + M Sbjct: 249 ANVSHDFRSPLTSIKGYLEAIKDGTIPPELYDKYLGILISETERLNKLTQGMLTLNSLDS 308 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNLFM 124 F + D + D E V + + ++L NL Sbjct: 309 KGFLTRSNFDINRVIKDTAATFEGTCNAKDIVLDLTFAADIQMVYADLGKIQQVLYNLID 368 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--SH 179 A + I + S+K G + + + ++ D Sbjct: 369 NAIKFSRENSVIYIQTSLKYEKVFVSVKDTGIGIPKESIKKIWDRFYKSDLSRGKDKKGT 428 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + L K Sbjct: 429 GLGLAIVKEIIQAHGENIDVISTQGVGSEFIFTLPK 464 >gi|172037459|ref|YP_001803960.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171698913|gb|ACB51894.1| probable two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 364 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 20/215 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L S + H++ +P+ + LE L G D + L++ + + L+ Sbjct: 148 LISDMTHELRTPLTVMRGYLEELANGSIEGNPDLYLNLVKETRRLERLIHDMQELSKAEA 207 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLF 123 G + + +I ++ + + +IL+NL Sbjct: 208 GYLSITLHPINIIPLLTSLVERFSDQIMDDGPMIQLDYPQELPPVLADSDRTEQILVNLI 267 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178 A G + + + G + + F + + + Sbjct: 268 GNAIRYTETGTITIKAWSTK-KQVWIEIIDTGIGIKPEDLPYIFERFWRADKSRSRYSGG 326 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I L ++ E L Sbjct: 327 TGIGLAITRRLVELQGGKIEVESEIGKGSTFRFSL 361 >gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] Length = 444 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 67/230 (29%), Gaps = 23/230 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------ 62 L + L + + + H++ +P+ AI ++L Q + Sbjct: 168 LEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTHQQTDMVERILNNGKNLLM 227 Query: 63 -RLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + G ++ L D + Q+ A ++V ++ + Sbjct: 228 LLNEVLDFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQPLVFN 287 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT----- 165 + ++ L A G + +N+ +++ G + Sbjct: 288 DSVRVRQILINLLSNAIKFTESGCIWIEVKELPQNQLAIAVRDTGIGIASRDFKHIFEAF 347 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + VD ++ + + L R++ E + + + Sbjct: 348 RQVDQSITRKYPGTGLGLAIIDSLVQMMGGRIILESQLGVGSMFRIEIPR 397 >gi|148265645|ref|YP_001232351.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399145|gb|ABQ27778.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 492 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 65/227 (28%), Gaps = 16/227 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53 + + + + L + + + + H++ +P+ AI S+ LD ++ + Sbjct: 258 QRAVSQMIQNEKLATIGKIVAGVAHEVNNPLAAISTSIYNLDGKAPQELKRYIEILKKGV 317 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109 F R+ V S + + + V Sbjct: 318 HRIEAIVRQLTDFSRVNTLDLRPVPSELFFKEAAGFAGMALKGTDLRFVGTDSCPPTTLD 377 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + +++LNL + A + P+ G + + G+ PE +I + Sbjct: 378 IDKGKLHQVVLNLILNALDASPQQGTIEFLAYCHDGFYFLVVTDQGSGI-PPEDREKIFE 436 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + ++ ++ E + Sbjct: 437 IFHTTKPAGEGSGIGLAICRSIVEMHRGEIILESRQG-MTTFIVKIP 482 >gi|330501968|ref|YP_004378837.1| sensor protein PilS [Pseudomonas mendocina NK-01] gi|328916254|gb|AEB57085.1| sensor protein PilS [Pseudomonas mendocina NK-01] Length = 530 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 70/219 (31%), Gaps = 19/219 (8%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL---- 64 + L +L L + I H+I +P+GAI ++ +LL E ++ +L ++ + Sbjct: 305 LKLASLGRLTAGIAHEIRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIE 364 Query: 65 ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + R +D L D+++ + G + + ++ Sbjct: 365 NVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPADRQIHLETQGGSLQTRMDPHQLTQV 424 Query: 122 LFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 L + + + +S + + + +G PE+ I + Sbjct: 425 LTNLVQNGLRYSAQKHRLGQVWLRLFRDESSDLPVLEILDDGPGV-PPEQEQHIFEPFYT 483 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + Y L N+ RL + + Sbjct: 484 TENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRIT 522 >gi|301058248|ref|ZP_07199291.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300447645|gb|EFK11367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 587 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 29/237 (12%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------------ 51 + + L +L L + + H+I +P+ I ++L + + + M Sbjct: 334 QQLMQTGKLASLGKLSAGVAHEINNPLAIILTERQILLDAAEDVDNMDPEFKTQLMDSLS 393 Query: 52 ----LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTG 106 I+ L+F R VD +G+I ++ D + + Sbjct: 394 QVDTQIQRCKRITHNLLRFSRRTQSSIAPVDLNAFIGEIIDLMERDARTSGIKFISDFQE 453 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLAR 159 + LS + +++ + ++ + D K +G+ Sbjct: 454 DLPTLSSDSSQLQQVFLNMITNAIDAHAGMPYGTIRITTRSDDEKQGINVVFADSGSGI- 512 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + E S Sbjct: 513 PPEIMDKIFDPFFTTKEVGKGTGLGLSICYSIVKRLGGGISVESERGKGTSFSMFFP 569 >gi|296122333|ref|YP_003630111.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296014673|gb|ADG67912.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 510 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 28/241 (11%) Query: 3 KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL----------------DEVG 44 + + S L L + + H+I +P+ AI + E L ++ Sbjct: 262 ERSRQLVRSERLAGVGFLAAGVAHEINNPLSAISMASESLASRVAGSNGEPLLISAEDAE 321 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + + +++I+ + + G + + + + F Sbjct: 322 VARQYLEMIQSEAGRCEEITSRLLTFARGQDAPRGRQDLTKIVQDVVQMVGHMGRFSGHT 381 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGN 156 + + E +++LNL A S+ GGK+++ +++ +E + K G Sbjct: 382 IDCRPVESVFAEVNGAEIKQVVLNLVANALESMGASGGKLSVEIKELSDEVCLAFKDTGC 441 Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 E + + ++ R+ L Sbjct: 442 GMSARVLENLFEPFFTERKSGRGTGLGLSISHRIVVDHGGRIEAHSDGPGCGSTFRVHLP 501 Query: 215 K 215 K Sbjct: 502 K 502 >gi|296100715|ref|YP_003610861.1| integral membrane sensor hybrid histidine kinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055174|gb|ADF59912.1| integral membrane sensor hybrid histidine kinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 758 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 68/232 (29%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + M V L + HD + + I SLEL D + + ++ Sbjct: 390 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTDPDSSDAPRIARALNAAERGAL 449 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R +V+ L ++ +++ + +++ + ++ Sbjct: 450 LTQRLLAFSRKQSLTPHAVEMKPLLENLRELMRHSLPATLSLEIEAQSPAWPAWIDVGQL 509 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + G+ E + Sbjct: 510 ENAIINLVMNARDAMEGQTGVIKIRTWNQRVTRSDGRRQDMVALEVIDRGSGM-TQEVKS 568 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 569 RVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLHLPR 620 >gi|225851110|ref|YP_002731344.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1] gi|225645199|gb|ACO03385.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1] Length = 339 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 60/216 (27%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69 S + H++ +PI + +E L++ + + + ++ + Sbjct: 119 FVSNVSHELKTPIAVMKGIVETLEQEEDVQTIRKFLNMAKKRIDQMDSLINDLLILAKLE 178 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + + + + + ++ +L NL Sbjct: 179 SKEEKLNITKADLSRIVNSIFNDLEHLSKEKNIKLINDIPEGFLIDVDQKKFDILLKNLI 238 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDS 178 A G VT+S + E + ++ G F + + + Sbjct: 239 ENAIKYNKPEGSVTVSAERKDGEILINVTDTGIGIPKESQPLIFERFYRVDKSRSRNVGG 298 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + ++ + + + + Sbjct: 299 TGLGLSIVKHIAEAHNGKVEVKSEPNVGSTFTVRIP 334 >gi|162456997|ref|YP_001619364.1| two-component hybrid sensor histidine kinase/response regulator [Sorangium cellulosum 'So ce 56'] gi|161167579|emb|CAN98884.1| two-component hybrid sensor histidine kinase/response regulator [Sorangium cellulosum 'So ce 56'] Length = 545 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 68/247 (27%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDL-----VAL-----LCSRICHDIISPIGAIHNSLELLD--------- 41 +A++ L + L A L + + HD+ +P+ I + LL Sbjct: 296 LAQSASVALENARLYNEAQAATRARDDLLAIVSHDLRNPLNTIAITASLLRSDLLQRKDG 355 Query: 42 EVGIEDEVMQLIRLSSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQV 89 + +++ + S ++ + G L + Sbjct: 356 DDDDAVQLVDRMDRGIQSMTRLIEDLLDASRIEAGRLVVSPRVERGGTLVREALDAATSL 415 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 E + + E + ++ NL A PRGG V++S+ + F Sbjct: 416 AEAKGCRVTQGPLDAGLEVLADRDRVLQVFSNLLGNALKFTPRGGVVSVSLCRVADGARF 475 Query: 150 SLKINGNLARFPEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 S+ G + + + + Y + + + E Sbjct: 476 SVADTGPGIPPEHQPHLFDRYWKAAQESRTGAGLGLYIARGIVEAHHGTMAVESAPGQGT 535 Query: 208 VLSALLE 214 + L Sbjct: 536 TIHFSLP 542 >gi|307822507|ref|ZP_07652738.1| integral membrane sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307736111|gb|EFO06957.1| integral membrane sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 642 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 76/260 (29%), Gaps = 47/260 (18%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI--------------HNSLELLDEVG 44 + + S + +L L + I H+I +PIGAI ++E Sbjct: 377 LQSAQTQLVQSEKMASLGQLVAGIAHEINNPIGAIYANMPPLEEYIDDIKGTVEFAQSCM 436 Query: 45 IEDEVMQLIRLSSMSAII--------------------------RLKFMRLAFGYTGSVD 78 E E +L + F RL G +V Sbjct: 437 DETEAQKLNAHMAQIDYTFVTDDLAKLLNSQKQAADRIRNIVLSLRNFSRLDQGEVKTVR 496 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV 136 GL Q++ V+ + E ++ +N+ A ++P G++ Sbjct: 497 LEEGLDSTLQMLHHHYKDRITVEKDYALNEMVECYAGELNQVFMNILANAIQAIPDKGRI 556 Query: 137 TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENK 194 I+ ++ + S+ G E +I D + + + + +++ Sbjct: 557 FITTAKMNDQAVVSIADTGTGM-PDEVRKKIFDPFFTTKEVGEGTGLGLSISYGIIEKHQ 615 Query: 195 IRLLPEIIDDHNVVLSALLE 214 L E + + Sbjct: 616 GMLTVESELNRGTRFIIAIP 635 >gi|300813035|ref|ZP_07093418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496005|gb|EFK31144.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 552 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ E + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVTDTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|283781767|ref|YP_003372522.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283440220|gb|ADB18662.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 252 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 67/226 (29%), Gaps = 19/226 (8%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMS 59 S +L A L + H+I +P+ I ++ELL E E + I + S Sbjct: 15 QLRASYQELAA-LAGSLAHEIKNPLSVIRMNMELLAEDFATPQTPKERRALAKIEMVSRQ 73 Query: 60 AIIRLKFMRLAFGYT----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + + + D+ V+ + Sbjct: 74 CTRLENLLNDFLRFSRAGRLDIRLGNLNEQIARVLDLFDAQSRENGVEVIRYFDHDLPSV 133 Query: 110 DLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + E + L NL A ++P GG++ + ++N L G ++ Sbjct: 134 SIDPEALQAALVNLVKNALEAMPAGGQLVARTRITRNGVALDLIDTGCGMDEKTAV-RMF 192 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + R+ + + + Sbjct: 193 DAFYSTKSGGSGLGLPTARKIIEAHGGRIGVQSELNRGTQFTLEFP 238 >gi|238752096|ref|ZP_04613579.1| hypothetical protein yrohd0001_220 [Yersinia rohdei ATCC 43380] gi|238709673|gb|EEQ01908.1| hypothetical protein yrohd0001_220 [Yersinia rohdei ATCC 43380] Length = 895 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + D ++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLDTALNHHPIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ +NL AH + I + + NG + Sbjct: 769 ADMVLINCDGSLLERVFINLLENAHKYAGFHALLGIRASVQGDWLQVEVWDNGPGVIAGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + L Sbjct: 829 EQLIFDKFSRGNKESVIPGVGLGLAICRAIIDVHGGRIWVERNPEGGASFYFTLP 883 >gi|229029070|ref|ZP_04185169.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271] gi|228732350|gb|EEL83233.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271] Length = 466 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + ++K G + + Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458 >gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 65/245 (26%), Gaps = 34/245 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL----DEVGIEDEV 49 K+ L L A + + H++ +P+ I E+L ++ + + Sbjct: 332 QKSRHEELMKAKLAAESANSAKDRFLAMVSHELRTPLNPIVGYAEILAAKIEDPMAQRFL 391 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQ 101 + + A + + + +G +D + + Q+ + ++Q Sbjct: 392 KIIKESAKGMASLVSDILDYSMIESGRIDIEVETFRMSDLLSLVSRQIESVALERGNKIQ 451 Query: 102 VSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKIN 154 V G + ++ +++ NL A G + + Sbjct: 452 VDLDGGDPWVEADKRKLSQVVSNLVANACKFTQNGKILISSSASQTSKEAYSVRIEVSDT 511 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G E I + ++ + L + + Sbjct: 512 GIGIPESEL-ETIFEPFEQLGSVHKAETRGVGLGLAICRQLVGALGGTISVSSQLGSGTI 570 Query: 209 LSALL 213 + L Sbjct: 571 FTVDL 575 >gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1178 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 77/231 (33%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + L S + A+ L + HD + + I +L E + E+++ Sbjct: 807 LKQLEAQLLQSQKMEAVGRLAGGVAHDFNNLLTVILGFGGMLGDRLTGRERTLVGEIVKA 866 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ L F R + + + + E+++ I D + E + Sbjct: 867 GERAAGLTRQLLAFSRQEVIQPRPLSLNVVVAEAERLLRRLIGEDIELTTVADPELAQVV 926 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFT 165 + ++L+NL + A ++P GG++T+ + + + S+ G E Sbjct: 927 ADPGQAEQVLMNLVVNARDAMPTGGRLTVETSNVERDGARYVLLSVTDTGCGM-SDEVKA 985 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + + + + H Sbjct: 986 RLFEPFFTTKGAGRGTGLGLAVVHGVVEQAGGHIEVDSVIGHGTTFQVYFP 1036 >gi|166030752|ref|ZP_02233581.1| hypothetical protein DORFOR_00426 [Dorea formicigenerans ATCC 27755] gi|166029544|gb|EDR48301.1| hypothetical protein DORFOR_00426 [Dorea formicigenerans ATCC 27755] Length = 713 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 69/242 (28%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53 + K+ + + + S + HDI +PI I E++ + + + Sbjct: 323 LEKSSQEVMRANQAKSDFLSHMTHDIRTPINGIMGMAEVIKKNCSDQNKVDECLDKIQKA 382 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKI 109 L +L G L Q I + A +K + V W I Sbjct: 383 SGHLLDLLNDVLDMSKLESGKIQLEQIPFELEKEMKELQTIMETQAEEKGLTVFWDMTGI 442 Query: 110 DLSR------ERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLA 158 + +ILLNL A +GG++ I D F + NG Sbjct: 443 CHNELIGSPLHMRRILLNLLSNAVKYNKKGGEIHLTVNEIMQNDKTAMFEFKVADNGIGM 502 Query: 159 RFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ V+ + + V + E + E + + Sbjct: 503 SESFIEDKLFQPFVQGTGEARTKYQGTGLGMSIVQRIVREMTGSIDVESKEGEGTTFTVT 562 Query: 213 LE 214 L Sbjct: 563 LP 564 >gi|153932079|ref|YP_001382738.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|153934988|ref|YP_001386289.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] gi|152928123|gb|ABS33623.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152930902|gb|ABS36401.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] Length = 615 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 KNI S L+ S I H++ +P+ I +++LL + +D+ ++L Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405 Query: 53 IRLSSMSAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 I+ + + + + + V + + Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFD 465 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E+ ++ + KI + + GG + ++V+D +K G Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNIFVNVKDCGENVYVHVKDTGVGIPS 525 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + V + + + L Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVHIKSELGQGTEFIIKLP 584 >gi|78184328|ref|YP_376763.1| adaptive-response sensory kinase [Synechococcus sp. CC9902] gi|123757119|sp|Q3AYV8|SASA_SYNS9 RecName: Full=Adaptive-response sensory-kinase sasA; AltName: Full=Synechococcus adaptive sensor protein A gi|78168622|gb|ABB25719.1| histidine kinase [Synechococcus sp. CC9902] Length = 383 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 67/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 + + + + L + H++ +P+ A +L+ + + +L Sbjct: 132 LRQENETLIDRIHAQERLLRMVAHELRTPLTAAALALQSQRLGQIDMDRFQDVVTRRLEE 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 + ++S + + I ++ + ++ + ++ + Sbjct: 192 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIRTDIPSDLPKV 251 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A GG + +S+ + S+ +G E+ Sbjct: 252 FADQRRMRQVLLNLLENALKYTGNGGHIALSMLHRTNQWVEVSVCDSGPGIPNEEQQRIF 311 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + R+ + + + Sbjct: 312 LDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVSEPEEGACFTFTVP 362 >gi|332534201|ref|ZP_08410048.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332036367|gb|EGI72837.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 672 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 29/242 (11%) Query: 1 MAKNI-CFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + + + + L ++L ++I H++ +P+ I L L + E + + I+++ Sbjct: 284 LREELKNKQAQAERLLEDRSMLFAKISHELRTPLNGITGMLTTLIDEHNEQKRTEKIKVA 343 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------------- 101 SA I L + ++ + L + ++ + Sbjct: 344 LRSADILLSIINEVLDFSKINHGELKLEPTDVLLNTTFTDLISLYTPLFKNSNVELEVKN 403 Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNL 157 +S + + ++I NL A G ++ ++K + G Sbjct: 404 EISDSCWAYCDNTRLSQITSNLLSNALKFTEHGCVKLHTSVINNNNKLTLNIKVADTGRG 463 Query: 158 ARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + V L + + S Sbjct: 464 MTSQFL-ESLFSPFTQEVDAKNSKGGTGLGLAIVKELVEYMGGTIKVSSKVNQGTTFSLS 522 Query: 213 LE 214 + Sbjct: 523 IP 524 >gi|298492280|ref|YP_003722457.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234198|gb|ADI65334.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 533 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 25/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + +L A L + +CH +P+ I S LL + + +++ Sbjct: 295 LEKTKLLS----ELRAHLVAIVCHQFRTPLNVISFSNSLLKRHIDKWDEEKILPFIKHIQ 350 Query: 61 -----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 I + ++ + + + + +I + ++ +++ Sbjct: 351 IGVEQINQILDDILFLAKAESVQFSFQPEVIDLVEFCQDLISKMLIINSEYHINFDSRGN 410 Query: 110 DLSRERAK-----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 K I+ NL A P G V + V + E IF +K G E Sbjct: 411 CEKVWIDKRLVEPIVNNLLENAIKYSPIGSVVELRVDCHEGEVIFHVKDQGIAI-PEEDQ 469 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + H + V L + + ++ + +L Sbjct: 470 NRLFEPFYRGSNIDKVPGHGLGLSIVKTLVNLHGGQMRVVSKVGVGTTFTVVLP 523 >gi|284046157|ref|YP_003396497.1| integral membrane sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283950378|gb|ADB53122.1| integral membrane sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 504 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 70/237 (29%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 +A L ++ + H++ +P+ I LE+L V + Sbjct: 253 LADAFDRMLDRLENAFERQRGFVADASHELRTPLTVIRGQLEVLARQTAVTPADVRHVDE 312 Query: 52 LIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++R + + + S+D + ++ + + Sbjct: 313 VVRTEVLRMERLVDDLLLLARADEGELVRPHSLDLAPFVTELFDALTLTADRAFELGELP 372 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163 G + A++L NL A GG V ++V+ + F+++ +G PE+ Sbjct: 373 QGRLLADEDRVAQVLRNLARNAVEHTGPGGLVRLTVRVLDRTQVEFAIEDDGPGI-PPEQ 431 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + + + + ++ L Sbjct: 432 RDRVFDRFHRTDSARARRTGGAGLGLAIARAIVEAHGGTIAAGSSPEGGARVAFTLP 488 >gi|317154681|ref|YP_004122729.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944932|gb|ADU63983.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 493 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 78/228 (34%), Gaps = 18/228 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57 M + + L ++ L + + H+I +P+ I L+ G++D+V + I + Sbjct: 258 MEHRLQ---QAEKLASIGELSTYMAHEIRNPLFTISGFANSLMRSGGLDDKVREKIGIIL 314 Query: 58 MSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + ++ +T + + + + + V V + Sbjct: 315 DESRRLDEILKSLLNFTRPTEAQVAEVDINELVTATMSVMSLPCENQGVTATVDLDENVA 374 Query: 108 KIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ + + + L+NL + ++ GG++ ++ + N + +++ G+ E + Sbjct: 375 RVRANPDLIKQCLINLVKNSLEAMDGGGRLLVTTTMTHNYAVLAVEDTGHGIPL-EIRDK 433 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E + ++ L Sbjct: 434 IFSPFFSTRGKGAGLGLAQTRKIIDEIGGEVDLVSRVGAGTKITLFLP 481 >gi|256005028|ref|ZP_05429999.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|255990996|gb|EEU01107.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] Length = 424 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 59/225 (26%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + S + H++ +PI +I +E L + + +++I + + + Sbjct: 198 EQIRTEFVSNVTHELKTPITSIRGFIETLKNGAMNNPVVAERFLEIIDIEAERLHELIND 257 Query: 67 M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + Q I + V Sbjct: 258 ILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLMKANINRM 317 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++++NL + G V++ + + S+K G +I + Sbjct: 318 KQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIP-RIFERFYRVD 376 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + Sbjct: 377 KGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 421 >gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 1041 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + + L + + H+I +P+ AI +L E + +E + + + Sbjct: 670 AKNKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSNILAETDVLEEKQEYAEIIENNNA 727 Query: 62 IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106 + L+ + VD L D+E+ + + + V Sbjct: 728 LLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDC 787 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++NL A +G +K F + G E+ Sbjct: 788 YVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVSDTGRGISV-EQQEA 846 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D V +S + ++ + E Sbjct: 847 IFDRFVKLDSFAQGTGLGLSICRMIVDHLGGEMGVESEIGKGSTFWFTFP 896 >gi|239905717|ref|YP_002952456.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795581|dbj|BAH74570.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 556 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 + + + L +L L S I H + +P+ I S ++L E + E Sbjct: 318 LERRQAQLVQEKKLSSLGVLTSGIAHQLNNPLNNISTSCQILIEEHGQCEPAFAGRMLTN 377 Query: 50 -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTG 106 Q + + L+F R + +++ + Sbjct: 378 IQQEVLRARDIVKGLLEFSRAKDFSLKPTPLAPVVAGAFRLVSSQTPSGITLSRDVPEDM 437 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + ++L+NL + A ++ + + ++ G + Sbjct: 438 VLNLDAARMQEVLINLLLNAVQAIDAPSGAITVSARVEADAVALVVEDTGPGIADEDLG- 496 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + V + +++ ++ E L Sbjct: 497 RVFDPFYTTKEVGKGTGLGLSIVFGIIEKHQGSIVAEKTGGRGARFVIRLP 547 >gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 589 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 59/225 (26%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + S + H++ +PI +I +E L + + +++I + + + Sbjct: 363 EQIRTEFVSNVTHELKTPITSIRGFIETLKNGAMNNPVVAERFLEIIDIEAERLHELIND 422 Query: 67 M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + Q I + V Sbjct: 423 ILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLMKANINRM 482 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++++NL + G V++ + + S+K G +I + Sbjct: 483 KQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIP-RIFERFYRVD 541 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + Sbjct: 542 KGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586 >gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] Length = 922 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 419 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 478 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 479 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 538 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 539 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 598 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 599 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 658 Query: 208 VLSALLE 214 ++ L Sbjct: 659 TVTVALP 665 >gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1206 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 59/231 (25%), Gaps = 28/231 (12%) Query: 10 SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 ++ ++ + + H+I +P+ AI E+L ++ + + SA L+ Sbjct: 585 EKAEMASITKSTFLANMSHEIRTPMNAIIGFTEVLLSDPNPNQNKKHLETIRNSAKSLLR 644 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKI 109 + + L ++ + + + Sbjct: 645 LLNDVLNSAKLDRGALELESVDFSLISLVDQVSSTFIMEAKRKGLEFLTHYSNELEDYYR 704 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 S +IL NL A +G +F ++ G ++ +I + Sbjct: 705 GDSLRIRQILTNLIGNAIKFTKQGKIELFITPHKGQ-VLFHIQDTGIGI-AEDRMEKIFE 762 Query: 170 GN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ E L Sbjct: 763 PFTQADVSMSRKFGGTGLGTTISKQLVELMGGKIWLESKLGVGTNFYFSLP 813 >gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 1041 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + + L + + H+I +P+ AI +L E + +E + + + Sbjct: 670 AKNKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSNILAETDVLEEKQEYAEIIENNNA 727 Query: 62 IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106 + L+ + VD L D+E+ + + + V Sbjct: 728 LLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDC 787 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++++NL A +G +K F + G E+ Sbjct: 788 YVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVSDTGRGISV-EQQEA 846 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D V +S + ++ + E Sbjct: 847 IFDRFVKLDSFAQGTGLGLSICRMIVDHLGGEMGVESEIGKGSTFWFTFP 896 >gi|197116896|ref|YP_002137323.1| GAF domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197086256|gb|ACH37527.1| sensor histidine kinase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 689 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 72/241 (29%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 MA+ I + M+ V +L I HD + + + + L + E + + + + Sbjct: 444 MAEQIRQS-QKMEAVGVLAGGIAHDFNNLLTGMIGYVSLALMTIKEEDPATKYLDQVVSA 502 Query: 57 SMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R + VD + ++ +++ + ++V + + + Sbjct: 503 ADRAADLTQRLLAFSRKQINHPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPSEGMLPVV 562 Query: 113 RERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154 + ++I + A ++P + + + S+ Sbjct: 563 ADSSQIDQMVMNLVTNARDAMPTGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDT 622 Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G + + + + V + +++ L L+ L Sbjct: 623 GTGMDEATRAHVLEPFFTTKEVGKGSGLGLAIVYGIVKQHEGHLEIYSKPGAGTTLNVYL 682 Query: 214 E 214 Sbjct: 683 P 683 >gi|187928757|ref|YP_001899244.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gi|187930010|ref|YP_001900497.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gi|187725647|gb|ACD26812.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gi|187726900|gb|ACD28065.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] Length = 535 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 65/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56 + + + +L S H+ +P+G I + L + L Sbjct: 296 LQETLDKERRMAELQRNFISMASHEFRTPLGVIDGQAQRLIRTRDALQPEALEERCGKIR 355 Query: 57 --SMSAIIRLKFMRLAFGY-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 + + + + L + ++ ++ ++ Sbjct: 356 AAVQRMTHLMDHLLDSSQWLDSTTPAAMRRTDFPLAALLHEVCEMHLEGTPSARIEVCIE 415 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R + NL A P G V++ ++ + +++ G Sbjct: 416 TDEPNTFFGDARLLFQAFSNLVGNAVKYSPPGAPVSVRMRSDADGVSVTVEDRGLGIPER 475 Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + V G + + Y V L+ ++ + + + L + Sbjct: 476 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSRFNVFLPR 532 >gi|115380076|ref|ZP_01467117.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115362916|gb|EAU62110.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 410 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 27/234 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 + + LS + + HD+ +P+GA+ + E+++ + L Sbjct: 163 LKRQREVQLS-------FIAGVAHDLRNPLGALKLGASTMRPGQPLPAEEKIRERFTLIV 215 Query: 58 MSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQV--SW 104 + + D + + + + + V Sbjct: 216 RQVERLERMVEDLLDTARIEAGRLELRLERYDLRGLVHEAVALHQGLSPAHELVSQLPEK 275 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++L NL A P GG V++ +Q + E +++ +G E+ Sbjct: 276 AVSVQCDPTRISQVLNNLLSNAIKYSPEGGLVSVELQTTGGEAQVTVRDSGVGIPSTERE 335 Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ I + + + R+ E L Sbjct: 336 SIFEPFRRSTSNRDTIPGVGLGLSVARRIIEAHGGRIAVESTPGVGSTFHFHLP 389 >gi|86158622|ref|YP_465407.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775133|gb|ABC81970.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 848 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEV----- 49 + + + + + +L + + + H++ +P+ ++ +LE L V E Sbjct: 458 RREMQARVQVAERMASLGTMAAGVAHEVNNPLTYVYGNVAFALERLRSVDARREAPLVEA 517 Query: 50 -------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + F R VD + + ++ A +V V Sbjct: 518 LQALREALAGADRVRHIVRDLKAFSRAEDDRLEPVDVVRVVEGCLKMTGTLTAGRAQVIV 577 Query: 103 SWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKING 155 + +++LNL + A ++P G ++ S ++ G Sbjct: 578 RFGPVPRVLASEARIGQVMLNLIVNAAHAIPEGDPGANRIEVSTALAADGRVEVAVADTG 637 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P+ +I D + + + + + E LL Sbjct: 638 TGI-APDVLPRIFDPFFTTKGVGEGTGLGLSICHGIVKALGGEIHVETEVGRGSRFRVLL 696 >gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] Length = 455 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 69/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54 + + + +L + S I H++ +P+ +I ++ L+ + ++ L Sbjct: 211 KERLLEETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEVPERFRRMLSLAE 270 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------V 102 + I + + ++ + + + Sbjct: 271 RNCNHLIQLVNDLLDVEKFSAGKMEFHFKNIDLKSFLTAEIATNQTFANNFGVTIEAAPM 330 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++L NL A + + ++ + E + S++ +G E Sbjct: 331 PEGVHVWGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKATGTEAVISVQDSGRGI-PRE 389 Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 K +++ + + + V + ++ R+ LE+ Sbjct: 390 KQSRLFEPFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEPGRGTTFYIKLER 448 >gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1271 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 21/240 (8%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + + + + H+I +P+ I E+L + + + + +++ Sbjct: 527 EQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQELSPQQQESVKIIQQCGE 586 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WT 105 + + + + ++ + V+ ++ + Sbjct: 587 QLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFLEQNVEMKIDIEQNLH 646 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLAR 159 + ++L NL A + + +IS D + + F ++ G Sbjct: 647 DQLKGDPTRIRQVLYNLISNAAKFTHQGYVKISVAEESISGADHQIKLRFCIEDTGIGIP 706 Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + DG+ + L + E + + S + Sbjct: 707 KEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLMGGEINVESQVNKGSIFSFYIP 766 >gi|219667788|ref|YP_002458223.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219538048|gb|ACL19787.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 356 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 60/214 (28%), Gaps = 19/214 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S + H+I SP+ +I LL + + E + RL + ++D+ Sbjct: 138 SNVSHEIQSPLTSISGFAGLLKKEDLSAEQRRRYAEIIEGESKRLSSLSENLLKLTTLDN 197 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTG--------------EKIDLSRERAKILLNLFMV 125 + + D + + +++ NL Sbjct: 198 SKLPLNRQDFRLDKQLEHVALLLEPQWSAKNLTLEAELPLCILCGDEDLLSQVWTNLLHN 257 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHD 180 A P GG+++I ++ + ++ G + F + + + + Sbjct: 258 AIKFTPEGGQISIGLKQEGDAAQVTIGDTGIGIGPEDRIHIFERFYKADKARARSAGGNG 317 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E L Sbjct: 318 LGLSLVKKIVDLHGGSIRVESTIGEGTTFEVFLP 351 >gi|326693644|ref|ZP_08230649.1| histidine protein kinase; sensor protein [Leuconostoc argentinum KCTC 3773] Length = 451 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 21/227 (9%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIR 63 L + + + H++ +P+ AI +E L + + + ++ + Sbjct: 224 LQVERMQSDFLANASHELKTPLTAITGFIETLQGPAGADQATREMFLDIVAQEAKRLSSL 283 Query: 64 LKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + D + + + AV R V L Sbjct: 284 VNDILSLSRVQQKREAVQTELVIHDMVAEQWQHVMPLAETKAVQLRNDVPDDFIIRGLKT 343 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170 + IL NL + A +GG + ++ ++K G + F + G Sbjct: 344 DVEMILQNLIVNAVKYNVQGGDIHVTAYKDHQHWQLNVKDTGIGIPTNQQSRIFERFYRG 403 Query: 171 NVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +++ + + +S L Sbjct: 404 DESRQRKIASGTGLGLAIVNEIVNKHNGEIKVQSQVAVGTTISVTLP 450 >gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 583 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + K S L + + + H+I +P+ AI +LL ++ ++E +Q+I ++ Sbjct: 203 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 262 Query: 58 MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +V + + + + V T Sbjct: 263 ELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 322 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+IL N A +G + + ++ G +K Sbjct: 323 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIEMGYEKIDGD-IRLYVRDTGIGI-PEDKKD 380 Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + E D + A+L Sbjct: 381 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 431 >gi|229055190|ref|ZP_04195617.1| hypothetical protein bcere0026_3240 [Bacillus cereus AH603] gi|228721182|gb|EEL72712.1| hypothetical protein bcere0026_3240 [Bacillus cereus AH603] Length = 402 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 20/226 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + + + I H+I +P+ A+ ++ E ED + + Sbjct: 183 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNPEDTM--SYEIMLQEI 235 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDI----------EQVIEDFIAVDKRVQVSWT-GEKI 109 F+ + +I + V +QV Sbjct: 236 ERINGFVSELMLLGKPKPTNYEWCNIGEILLYVVQLMESYAAQYKVKFHLQVDGNLPVIN 295 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIV 168 ++ ++LLN+ S+P GG + I + + S++ G EK +I Sbjct: 296 GDDKQLKQVLLNIIKNGIESMPGGGNIQIMAYEKAGDNLCISVEDQGIGI-ENEKIEKIG 354 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + E + L Sbjct: 355 KAFYTTKENGTGLGLMITYKIIEEHQGSIAIESSMGIGTKVEIYLP 400 >gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+] gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+] Length = 1417 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 29/239 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 N + L + + + H+I +PI + ELL +V + +E + SA Sbjct: 821 NEAAAKEASRLKSQFLANMSHEIRTPITGVIGMSELLLDVELTEEQRDITENIYRSANAL 880 Query: 64 LKFMRLAFGYTGSV------------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 L + ++ D L + + D + Sbjct: 881 LTVINDILDFSKVESGRLDIEEVQFSLSVIVRDVSKMLSFAAERKDLAFHSDISEDIETD 940 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFP 161 + +I+ NL + G ++ F ++ G Sbjct: 941 MVVMGDPGRVRQIITNLVTNSIKFTNHGHVKFSVFKEKDTPEITEIKFVIEDTGIGI-EE 999 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + L K R++ E + + Sbjct: 1000 EVRKRLFQPFSQGDASTARKFGGTGLGLTICKHLLDLMKGRMVLESTLGTGTTATFWIP 1058 >gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 461 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 59/225 (26%), Gaps = 23/225 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69 L + + + H++ +P+ ++ E++ E + E + + + L+ + Sbjct: 217 RLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGIIMEKGENLLQLITS 276 Query: 70 AFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + V + I + + + Sbjct: 277 ILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCDTTPLPRIHADRDKL 336 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV-----D 169 + L+NL A P GG +T+S + + +G D Sbjct: 337 RQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVD 396 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + V + + V + LL Sbjct: 397 GSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSVFTVLLP 441 >gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K] gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K] Length = 461 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 59/225 (26%), Gaps = 23/225 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69 L + + + H++ +P+ ++ E++ E + E + + + L+ + Sbjct: 217 RLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGIIMEKGENLLQLITS 276 Query: 70 AFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + V + I + + + Sbjct: 277 ILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCDTTPLPRIHADRDKL 336 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV-----D 169 + L+NL A P GG +T+S + + +G D Sbjct: 337 RQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVD 396 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + V + + V + LL Sbjct: 397 GSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSVFTVLLP 441 >gi|73541976|ref|YP_296496.1| osmosensitive K+ channel signal transduction histidine kinase [Ralstonia eutropha JMP134] gi|72119389|gb|AAZ61652.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Osmosensitive K+ channel His kinase sensor:UspA [Ralstonia eutropha JMP134] Length = 951 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 25/239 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRL 55 A+ ++ S L + L + + HD+ +P+ ++ E L + Sbjct: 698 AQRALLSMESERLRSSLLAAVSHDLRTPLTSLIGMAETLQRGDPPLAPRVADTVSAMRDQ 757 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTG 106 + + + + + +A V E+++ + Sbjct: 758 ARRMSTMVVNLLDMARLQGRDVRMQKEWQSFEELVGAALGALRDALVGHRVAVADLHKMP 817 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++L NL A P G ++ I + +E ++ +G + Sbjct: 818 LVECDAVLMDRVLCNLLENAAKYTPAGTEIRIRAEVVDDEVRLVVEDDGPGVPPGSERQI 877 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-------HNVVLSALLEK 215 F + G ES + + + R+ E + D L + Sbjct: 878 FEKFTRGERESVTTGVGLGLAVCDAIVQAHGGRIWVEPVRDAATAGAGIGARFIVALPR 936 >gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina mazei Go1] Length = 716 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 66/243 (27%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQ 51 K I L + + + + H++ +P+ +I +LL + + ++ ++ Sbjct: 467 RKAIEKLLQEKQVAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIYGKLNEKQLK 526 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKR 99 S S L + + + L E + + + Sbjct: 527 YTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLSPIAARKNIK 586 Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 ++++ + + + +I+ NL A V I + ++ G Sbjct: 587 IEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIEARRKGEFLETTVTDIGI 646 Query: 157 LARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + ++ + V + + + + I + Sbjct: 647 GIKPEDQHKLFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRSIPGEGSTFAF 706 Query: 212 LLE 214 + Sbjct: 707 AIP 709 >gi|330836391|ref|YP_004411032.1| multi-sensor signal transduction histidine kinase [Spirochaeta coccoides DSM 17374] gi|329748294|gb|AEC01650.1| multi-sensor signal transduction histidine kinase [Spirochaeta coccoides DSM 17374] Length = 627 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 65/220 (29%), Gaps = 22/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65 + + H++ +P+ AI+ E L I E + L +++ Sbjct: 382 FVANVSHELKTPLTAINGFSETLLGGMISSEDIGLFSKIINRNARQMQGIIDDLLLLASL 441 Query: 66 ---FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILL 120 L + + + + +V V + + + L+ Sbjct: 442 EDDHAALTMKRCTLEELVKETCEDTSYRANSRSVILTTTVHDENGRGVMVNPSLLVQALV 501 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175 NL + A G +V I + ++ FS+ G+ F + + Sbjct: 502 NLVINAITYSEPGSEVRIKAEGDQDTVTFSVMDQGSGIPEKHLTRIFERFYRVDKARSRN 561 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + ++ + +++ + + + Sbjct: 562 QGGTGLGLSIVKHVVSMHGGQVSVQSVENLGSTFTITIPR 601 >gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1026 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 67/242 (27%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ S+ + + + H+I +P+ A+ ELL + E M Sbjct: 631 LQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMDEKDEKLTSAQRECVEMIR 690 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------------------VIEDFIAVDKRVQ 101 I + + + ++E V + I +++ Sbjct: 691 ISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSMDLVSGSVGDKRIKFSYKIE 750 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNL 157 + + +IL+NL A +G ++ D E F++K G Sbjct: 751 ENVPQFIMGDPTRLCQILINLLNNAVKFTEQGEIAVSVSNTNLDDGGYEIHFAVKDTGIG 810 Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 +K +++ + L R+ E V Sbjct: 811 I-PEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEMMNGRMWVESAVGVGSVFHF 869 Query: 212 LL 213 + Sbjct: 870 TI 871 >gi|255009841|ref|ZP_05281967.1| putative two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313147627|ref|ZP_07809820.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136394|gb|EFR53754.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 479 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 67/237 (28%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51 + KNI L S S I H++ +PI AI SL+LL++ E Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGVLNGEQEQLSKN 301 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + S I + + + G + + + ++IE I ++ + + Sbjct: 302 IKDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVE 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + + ++ G Sbjct: 362 YPEEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGARREEEYIELYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + L+ Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478 >gi|254784782|ref|YP_003072210.1| Two component sensor signal transduction histidine kinase [Teredinibacter turnerae T7901] gi|237685661|gb|ACR12925.1| Two component sensor signal transduction Histidine kinase [Teredinibacter turnerae T7901] Length = 994 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 71/237 (29%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M L S L ++ L + + H+I +P+ I + + + ++++ + Sbjct: 746 MQLLEQELLHSERLASVGRLAAGVAHEIGNPVTGIACIAQNMKYETEDADLLESVDQILS 805 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------------KRVQVSW 104 + + ++ S + A + V Sbjct: 806 QTDRVSRIVHSLVNFSHSGQQQQEDNAQLPIDLRDCAQEAIDLIKLQQKGDITFENTVDS 865 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ ++L+NL A + P GG + ++ KN S+ G PE Sbjct: 866 GLTAMGDTQRMIQVLVNLLSNARDASPDGGHIVVNGDLRKNWVHLSVTDEGTGI-SPELR 924 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215 QI + + + + V + E+ L D L K Sbjct: 925 DQIFEPFFTTKEPGEGTGLGLAMVYSIVEEHGGLLEIISPVDEVLQKGTKFVIKLPK 981 >gi|210610306|ref|ZP_03288335.1| hypothetical protein CLONEX_00525 [Clostridium nexile DSM 1787] gi|210152536|gb|EEA83542.1| hypothetical protein CLONEX_00525 [Clostridium nexile DSM 1787] Length = 516 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 64/239 (26%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49 + + L S I HD+ +PI AI +E + + + Sbjct: 270 LKDTAEEKVEYDRKSKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTIYN 329 Query: 50 ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQV 102 M L+ T V+ ++ I V Sbjct: 330 KANEMDLLINELTLYSKIDSNRIPYNFSTVLVNDYFDDCAEDLAMELEARGIEFGYFNYV 389 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161 + I + +++ N+ + + + V+D + L+ NG Sbjct: 390 ESDVKIIADVEQLKRVINNIVSNSEKYMDKEHGKINLRVKDVGDFVQIELEDNGKGIGAK 449 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E F + + I V + E+ ++ + V+ ++ K Sbjct: 450 ELPHIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSKEGTGTVMYFVIRK 508 >gi|206889635|ref|YP_002249063.1| cell cycle histidine kinase CckA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741573|gb|ACI20630.1| cell cycle histidine kinase CckA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 261 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 66/242 (27%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53 K + + + ALL + I HD + + I L++ + + Sbjct: 6 KKTEEQLIQAQKIEAAALLANGIAHDFNNLLTPILGFSGLVESKLGANHPLYPYVEHIHS 65 Query: 54 --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + L F R + L D + I + D ++ I + Sbjct: 66 SAEKAKELIKRLLSFSRKDTTEFKPLYLDDLLKDFLEFIHPILRKDIKIITDLNVGTIQI 125 Query: 112 SRERA---KILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLKI 153 ++ ++++NL A ++P GG + + S+ Sbjct: 126 FADKNLIEQVIMNLVTNAKDAMPEGGILKISTSLIEIDETFVNTHGYGKPGRYVLLSISD 185 Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ E +I + + D + V + ++ + Sbjct: 186 TGHGM-DEEVKQRIFEPFFTTKGDKGTGLGLSVVYNIVQQHNGYINVYSELQKGTTFEIY 244 Query: 213 LE 214 Sbjct: 245 FP 246 >gi|193212975|ref|YP_001998928.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193086452|gb|ACF11728.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 1397 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 64/242 (26%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLS 56 + + ++ + L I HD + + I E L+ E + + I + Sbjct: 1011 LLEENLIKTQRLETIGTLAGGIAHDFNNILTPILGYAEMGSILMQENNLPHDFYTQIMQA 1070 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111 + A + + + + ++I + I + + +S Sbjct: 1071 AERAKNLVSQILMFSRAEKAEPAIIKVQQIVEEAMQLLRPSIPSTISIETRFSKCGNVLV 1130 Query: 112 -SRERAKILLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSLKIN 154 + ++++NL A ++ + ++ N Sbjct: 1131 DPTQLHQVIMNLCTNAFQAMEDSGGEMSIDLREIIADNEFHKKHPNLKDSHYAQLTVTDN 1190 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ +I + + + V + K + E + + Sbjct: 1191 GHGMEASTI-ERIFEPFYSTRGFNKGTGLGLSVVHGIVTSFKGDITVESLPGNGSTFRIY 1249 Query: 213 LE 214 L Sbjct: 1250 LP 1251 >gi|119897209|ref|YP_932422.1| two-component sensor kinase [Azoarcus sp. BH72] gi|119669622|emb|CAL93535.1| two-component sensor kinase [Azoarcus sp. BH72] Length = 663 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 72/237 (30%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNS----LELLD----EVGIEDEV 49 +A L + LV + + S + H++ P+ AI + L L+ + ++ Sbjct: 425 LALQQEERLQATSRLVTMGEMASTLAHELNQPLAAIASYNTGCLNRLEADEFDRDELRDI 484 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSW 104 + I + A ++ + + L ++ + V D + Sbjct: 485 HEKIGRQARRAGDIIRRVHDFVRRAEPRREALDLNEVIREALGLVEPDARKRRIHLVADL 544 Query: 105 TGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNL 157 + + + +I++NL ++ + S + + + +G Sbjct: 545 AADLPVVHADAVMIEQIIVNLVRNGMDAMQDTPEPNRSLRIGTRSAGAVVTVRVTDHGTG 604 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + + +A + RL E D + + L Sbjct: 605 I-DAETARHLFQPFFTTKQEGMGMGLNICRSIAELHHGRLGFEPAPDGGTIFTLTLP 660 >gi|113867802|ref|YP_726291.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113526578|emb|CAJ92923.1| signal transduction histidine kinase [Ralstonia eutropha H16] Length = 350 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 20/221 (9%), Positives = 58/221 (26%), Gaps = 23/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + + HD+ +P+ ++ LE+L + +Q+ ++ + Sbjct: 129 LLANVSHDLRTPLASMQGYLEMLLLKAEEMTPEDRNRYLQVATRHCERLGKLVQDLFDLT 188 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKIL 119 + + + + ++L Sbjct: 189 KLEAREVQPRLESFPLSELAQDVVQKFALAANKRGLALLATSGPGCPPVSADIGMIERVL 248 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 NL A P GG++++ VQ + +++ G + F + + Sbjct: 249 ENLIENAMRYTPAGGEISVDVQAAGERVELTVRDTGQGIDTSQVQGVFDRYYRVERTESD 308 Query: 177 DSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + L + Sbjct: 309 NGSNVGLGLAISRRIVQLHGGEIRVRSALGKGTAFTIDLAR 349 >gi|76800727|ref|YP_325735.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM 2160] gi|76556592|emb|CAI48163.1| signal-transducing histidine kinase; probable PAS/PAC domain protein [Natronomonas pharaonis DSM 2160] Length = 628 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 57/230 (24%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55 A+ S+ L + HD+ P+ + + L+LL+ +D + Sbjct: 393 ARRRELRESNERL-QQFAYVVSHDLQEPLRMVSSYLDLLESEYSDDLDAEAREYIDFAVD 451 Query: 56 ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSWTGEK 108 S L + R+ + + + R++ Sbjct: 452 GAERMSRMIDALLSYSRVETRGEEPAPVDAAAVFEEAHRDLKQRIEETNARIEADDLPTV 511 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLAR---FPEKF 164 + + ++ NL A V V+ E +F++ G + F Sbjct: 512 LADRSQLGQLFRNLLSNAIEYAGDEPPVVDVAVERQNGEYVFAVADEGVGIHERDREDIF 571 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G I + + + + L Sbjct: 572 EVFQRGRNADRGSGTGIGLAICRRIVDRHGGDIWVDSTVGDGTTFYFTLP 621 >gi|119717119|ref|YP_924084.1| GAF sensor signal transduction histidine kinase [Nocardioides sp. JS614] gi|119537780|gb|ABL82397.1| GAF sensor signal transduction histidine kinase [Nocardioides sp. JS614] Length = 539 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 59/212 (27%), Gaps = 18/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + H++ +P+ +I +ELL + +E ++ ++ + + A + Sbjct: 311 VAHELRTPLTSILGYVELLVDDVDGRGEDLERTARRIDEAATRLRDRITELLDTADRHRQ 370 Query: 76 SVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128 + L A + ++ + + + ++ NL A Sbjct: 371 LDLASTDLAALTRGLTDSFAAQARAADITLTTQAQHPEWAVVDEAGIEMVVRNLVSNAIK 430 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI--DSHDIQF 183 GG + ++ + ++ +G E I Sbjct: 431 FTHPGGHIALTTTGQPDHVRITVTDDGVGMSPDEVAQACDMFWRAESSHRQALPGTGIGL 490 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L + L + D ++ L + Sbjct: 491 ALARDLIAAHHGSLDIDSTPDVGTTITLTLPR 522 >gi|330718003|ref|ZP_08312603.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc fallax KCTC 3537] Length = 621 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 66/240 (27%), Gaps = 32/240 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 + S + S + H++ +P+ ++ + ++ L D+ + + +++ + Sbjct: 369 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALADGAIDDPEMSHNFLGVVQDETQ 426 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------- 105 I + + + + +F+ + + Sbjct: 427 RMIRMINDLLELSRLDQGTMEVKLEIVNLNSLFNFVLDRFDMILENDAKKDNGNKQYKIQ 486 Query: 106 -------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++L N+ A P GG +T + +K I S+ G Sbjct: 487 REFTKQDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDEGLGI 546 Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + K R+ + +++ L Sbjct: 547 PRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFKGRIWVDSVENRGSTFYISL 606 >gi|325286067|ref|YP_004261857.1| histidine kinase [Cellulophaga lytica DSM 7489] gi|324321521|gb|ADY28986.1| histidine kinase [Cellulophaga lytica DSM 7489] Length = 363 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 15/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 + K + ++ + + I H++ +P+ I ELL + +D + Sbjct: 135 LIKRQVEQSDRLRILGEITAGIAHELNTPLANILGFAELLKDRTKQDSQATKDLDKIINS 194 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDL 111 S + F V+ + + + + + + S + KI L Sbjct: 195 AIYSREVVKKLMFFACEMPQQKSLVNIIPICKEAIELLKPILKTKNITLNFSSSNSKIAL 254 Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 +R ++ LF A G + + ++D +K G +I Sbjct: 255 KIDRIQLTQVLFNLVINAIYFSEENGVIVLDIKDKSARVEIHIKDQGTGIDTN-LGDKIF 313 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + +K + + + + K Sbjct: 314 EPFFTTKPVGEGSGLGLSVVHGIVKSHKGNISFSANMPKGTIFTVAIPK 362 >gi|291559354|emb|CBL38154.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 450 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + + + H++ +P+ I + E L E + +E + + + Sbjct: 219 MFERLEESFEKEQ---QFTADVSHELRTPVTVIISQCEYLIEDPVLEEEEKEEIMIILRQ 275 Query: 61 IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 R+ + + + + + + + V Sbjct: 276 ARRMSKLINEMLMIARGEMSESYDMEEVDLILLTEVIVEELREQAEKKKIQISVFSDRDV 335 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 + + ++++NL A + G + I ++ + I +K +G + Sbjct: 336 KMMGNHTLLLRMMMNLVQNAISYGKEHGHIDILWKEQGDMIIGEVKDDGIGIDQEDIPKI 395 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + V + + ++ E + K Sbjct: 396 WDRFYRVDKSRSRENGGTGLGLSMVHFIVAVHGGQIHVESKNGEGTSFIFQFPK 449 >gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 785 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 62/254 (24%), Gaps = 42/254 (16%) Query: 2 AKNICFNLSSMDLVA---------------LLCSRICHDIISPIGAIHNSLELLDEVGIE 46 + L L A + + H++ +P+ AI L+LL+ + Sbjct: 235 REGSRAALEQAKLAAEKARHTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGTELT 294 Query: 47 DEVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVI 90 D+ ++ +A + T + + + V Sbjct: 295 DKQRSYTHNTASAARSLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVG 354 Query: 91 EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNE 146 I V V + ++L+NL A RG V + +K Sbjct: 355 AKTIEVLFDVGTDVPNALVGDDMRLQQVLINLGGNAVKFTERGEVVIRLRLKATNGAKAF 414 Query: 147 NIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPE 200 F++ G E I G + L L + Sbjct: 415 VEFAVSDTGIGI-ASENQAHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGTLEVD 473 Query: 201 IIDDHNVVLSALLE 214 + + Sbjct: 474 SVPGEGSNFHFTVP 487 >gi|239908505|ref|YP_002955247.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798372|dbj|BAH77361.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 683 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIR 54 + + + S + +L L + H+I +P+G I +LL E +Q I Sbjct: 420 LKQFQEQLIQSQKMESLGKLAGGVAHEINTPLGVILGYSQLLQEDVPGGSQIQADLQTIE 479 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 + + + S + + V + Sbjct: 480 KQAKVCRKIVADLLGFSRQAESAKIEMCFNNSLMEAITLVRHALSLEKVVIATDLDERMP 539 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ +NL A +L G + + + +G P+ Sbjct: 540 IIYGDPEKLKQVWINLLSNASDALEGRGGTLLVRSRLFAHEQKVTAWFADDGPGI-SPDN 598 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH--------------NV 207 ++ D + + + ++ + E Sbjct: 599 LGRVFDPFFTTKPVGQGTGLGLSVSFGIIKDHGGSIRVETPAPEGFFDALDDPGHDRPGT 658 Query: 208 VLSALLE 214 V L Sbjct: 659 VFVIDLP 665 >gi|209548975|ref|YP_002280892.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534731|gb|ACI54666.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 510 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 64/233 (27%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 +A+ N +L + H+ +P+ I + + L E + + IR Sbjct: 268 LAQERNIN----ELQRQFVAMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 323 Query: 55 LSSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------W 104 S + ++ + TG +D + +I + + Sbjct: 324 ASVNRIVDLMESILSAGRLDTGKIDISYDACALRSLIRSCCERQSTIAKTHRFVLDIDGL 383 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 R A++ NL A P ++ ++ + S+ +G + Sbjct: 384 PEFIDADPRTVAQVFTNLLSNAVKYAPGTSEIRVTAWEETGNVKVSISDDGVGIDPEDVP 443 Query: 164 --FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I I V + + + + L Sbjct: 444 RLFQRYFRAGTSTGIAGTGIGLNLVKQIVELHHGSIEVRSARGCGSTFTVTLP 496 >gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei BCC215] Length = 927 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 544 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663 Query: 208 VLSALLE 214 ++ L Sbjct: 664 TVTVALP 670 >gi|187922526|ref|YP_001894168.1| histidine kinase [Burkholderia phytofirmans PsJN] gi|187713720|gb|ACD14944.1| histidine kinase [Burkholderia phytofirmans PsJN] Length = 666 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 34/248 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE--DEVMQL 52 + + + L AL + + I H++ P+ A+ + LL+ E ++ Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQASARENLEA 463 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------- 99 I + ++L G ++ + + + + + Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRNARAPIVRALRNVVALLQKRLQGVEVDITLLDADS 523 Query: 100 --------VQVSWTGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIF 149 ++L+NL A + +++I ++ + F Sbjct: 524 GTRTPLSLADDHPELVAHCDDLRLEQVLINLLGNALDATADLHPPRISIEIEVADANLSF 583 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + NG + ++ + + + +A + L+ D Sbjct: 584 VVSDNGPGI-ADDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGSLVARNAPDGGA 642 Query: 208 VLSALLEK 215 + L + Sbjct: 643 LFVLTLRR 650 >gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 480 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 69/240 (28%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 ++I + + + + + H+I +P+ + E L + +E++Q+I S Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGSPEESEELVQVIHDES 291 Query: 58 MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +K + + L + + ++ + + + + Sbjct: 292 LRMGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQGQR 351 Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160 ++L NL A P G KVTI+ +K G Sbjct: 352 LLLPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGERHELIRIRIKDEGVGIAS 411 Query: 161 PE---KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + V + + + + + LL Sbjct: 412 EDLPYIFDRFYKADKARVRGEDKGTGLGLAIVKNIVEAHGGSVSAASVLGEGTEFTILLP 471 >gi|296160389|ref|ZP_06843206.1| histidine kinase [Burkholderia sp. Ch1-1] gi|295889370|gb|EFG69171.1| histidine kinase [Burkholderia sp. Ch1-1] Length = 666 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 34/248 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGI--EDEVMQL 52 + + + L AL + + I H++ P+ A+ + LL+ E ++ Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQVSARENLEA 463 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------------- 97 I + ++L G + + + + + Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRSARAPIVRALRNVVALLQKRLQGVEIEFALLDAQS 523 Query: 98 ---KRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149 + ++ ++ + ++L+NL A + IS++ F Sbjct: 524 GSRMPLSLADDYPELIAHCDDLRLEQVLINLLGNALDATADIDSPRISIEIEVADANLSF 583 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + NG + ++ + + + +A + L+ Sbjct: 584 VVSDNGPGI-ADDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGSLVARNAPGGGA 642 Query: 208 VLSALLEK 215 + L + Sbjct: 643 LFVLTLRR 650 >gi|284051623|ref|ZP_06381833.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291570874|dbj|BAI93146.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 368 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57 N+ L + L S HD+ +P+ +I S +LL + + + Q I+ S Sbjct: 134 NLFQELEAEK--TRLLSIASHDLKNPLTSIQMSTDLLAKYDSKLDEQKKLKHFQRIQSSI 191 Query: 58 MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWT 105 S V+ + + + + + ++++ Sbjct: 192 NSMNQLLEDVLTLSKSSSGKLTFAPKLVNVVKFIQLLIDQLMVQVNDQHKLELRTSGDLD 251 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 + + IL NL A P GG + V +N+ IF +K G Sbjct: 252 DPIMLDDKLLGHILANLLSNAIKYSPDGGVINFDVIRQENQIIFRIKDAGIGFPPEYIQK 311 Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F G+ I + V + + + + +L Sbjct: 312 LFQAFERGSNVGNIKGTGLGLSIVKQAVDLHGGEITVDSELGQGTTFTVILP 363 >gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 63/235 (26%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + S+ + + + H+I +P+ A+ ++ LL ++ E + + + + Sbjct: 194 ERRKAEVASAAK--SDFLAVVSHEIRTPMNAVISAANLLRRTRLDREQREHVSMLLDAGD 251 Query: 62 IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105 + + + +D +G + ++ E + + + + Sbjct: 252 VLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSLIRLWEPKASANGVRLKVLIDDAAP 311 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKF 164 ++L NL A G I S+ G Sbjct: 312 ARIRTDPLRLQQMLFNLLSNAVKFTEDGTISIAVDWRAEDGRLIVSVADTGCGIPADRLA 371 Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + LA RL E ++ V + L Sbjct: 372 HIFDSFEQVDAGTTRKYGGTGLGLAISRRLAEIMGGRLTAESVEGEGSVFTLSLP 426 >gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 615 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 KNI S L+ S I H++ +P+ I +++LL + +D+ ++L Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405 Query: 53 IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103 I+ + + + + Y + V + + Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E+ ++ + KI + + GG + + ++D +K G Sbjct: 466 TDVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHIFVKIKDCGENVYIHVKDTGVGIPS 525 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + V +K + + L Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584 >gi|240146930|ref|ZP_04745531.1| sensory transduction histidine kinase [Roseburia intestinalis L1-82] gi|257200913|gb|EEU99197.1| sensory transduction histidine kinase [Roseburia intestinalis L1-82] Length = 478 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67 S + HD SP+ +I +E + + ++D+ + +I + K + Sbjct: 252 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLLELNKF 311 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121 S D + Q E + T + ++L N Sbjct: 312 GSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYN 371 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177 L A +TI + + S+K G + + + ++ D Sbjct: 372 LIDNALKFSHANSSITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDK 431 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 432 KGTGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 469 >gi|225571364|ref|ZP_03780360.1| hypothetical protein CLOHYLEM_07462 [Clostridium hylemonae DSM 15053] gi|225159840|gb|EEG72459.1| hypothetical protein CLOHYLEM_07462 [Clostridium hylemonae DSM 15053] Length = 471 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 64/219 (29%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + HD SP+ +I +E + + ++++ +++I + + + + Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAMTDGTIPAELQEKYLKIILFETERLTDLTQDLLTLNEF 308 Query: 74 --------TGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121 D + ++ E K + + R+ ++L N Sbjct: 309 DTQNLLLNKEPFDIHEIIKNVAASFEGTCTQKKVSIELIFATKHLFVNADKRKIQQVLYN 368 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177 L A VTI + ++ S+K G + + ++ D Sbjct: 369 LLDNAIKFSDSESAVTIETTERGDKVFTSVKDYGIGIPRNALNKIWERFYKTDLSRGKDK 428 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + S L K Sbjct: 429 KGTGLGLAIVKEAIQAHGENVNVVSTEGVGTEFSFSLPK 467 >gi|86157755|ref|YP_464540.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774266|gb|ABC81103.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 379 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 64/219 (29%), Gaps = 10/219 (4%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60 + + L I HD+ +P+G I SL +L + + + I A Sbjct: 161 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRGRVGDDERARKHVDRIGEQLGVA 220 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 + + + +G + + V V+ G + + Sbjct: 221 NGIITNLLDMIRNRPLAREPVDVGQVVAAAAAAVKHAPGVSVAVEGFEGLPPVDGDPGQL 280 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +NL A + G VT+ + +++ G + ++ + + + Sbjct: 281 RQVFVNLLENAAFAAAPQGAVTVRARRDDGALEVAVEDTGPGVDPATRR-RLFEPLITTK 339 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + L Sbjct: 340 DKGIGLGLALVKRIAERHGGSVEYSDRPGGGARFTVRLP 378 >gi|75763065|ref|ZP_00742850.1| Two-component sensor kinase ycbM [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489443|gb|EAO52874.1| Two-component sensor kinase ycbM [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 340 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 98 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYM 157 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + + + + Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 217 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G V + + ++ E + G + Sbjct: 218 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 277 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E + + K Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 334 >gi|186682169|ref|YP_001865365.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464621|gb|ACC80422.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 595 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 58/224 (25%), Gaps = 22/224 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 L + + H++ SP+ I +LL + + I ++ ++ + Sbjct: 219 RLKDEFLAVLSHELRSPLNPILGWAKLLQTRKLDEAKTAYALATIERNAKLQSQLMEDLL 278 Query: 69 LAFGYTGS--------VDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRER---A 116 VD + V A ++ + + + Sbjct: 279 DVSRILQRKLSLKISSVDLSAVIEVALDTVRLAAQAKSIELKTEFEPNIGQVLGDPSRLQ 338 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172 +++ NL A GG+V I ++ + + G Sbjct: 339 QVVWNLLSNAVKFTEDGGQVEIRLERVGTQAQIQVSDTGKGINPEFLPHVFDYFRQADNT 398 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 T + + + + E DD + LL Sbjct: 399 TTRTFGGLGLGLAIARQIIELHGGAIQAESEGDDKGATFTVLLP 442 >gi|332083592|gb|EGI88812.1| HAMP domain protein [Shigella boydii 5216-82] Length = 736 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 73/232 (31%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q + ++ Sbjct: 368 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNTDSPDAPRIQRAQQAAERGAL 427 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 428 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLTLEIEAQSPAWPAWIDVSQL 487 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 488 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 546 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 547 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 598 >gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 643 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 64/221 (28%), Gaps = 25/221 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + I H++++P+ + L + + ++ S L+ + + Sbjct: 418 ATISHELLTPLTYVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLEMINDILDLSQI 477 Query: 77 VDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKIL 119 L E ++E +++ +I+ Sbjct: 478 QAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQII 537 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNVES 174 NL A P+GG VT+ N IF ++ G + Q VD + Sbjct: 538 WNLLTNAIKFTPQGGSVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHR 597 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I L ++ R+ E V + + + Sbjct: 598 PYEGTGIGLALTKQLVELHRGRIEVESTVGVGSVFTVWIPR 638 >gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 788 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 61/248 (24%), Gaps = 37/248 (14%) Query: 4 NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 L S + A + + + H+I +P+ + L+LLD DE + + Sbjct: 388 QAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTAPNDEQKEYLLG 447 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKR 99 + S + + + + + ++E I++ + Sbjct: 448 AVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKGLILEFG 507 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENIFSL 151 I +IL NL A +G S + S + ++ Sbjct: 508 CVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKGKIRIDASLLPLLPSSKSSAIRVLITV 567 Query: 152 KINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G G+ + V L + + Sbjct: 568 HDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVSRLVKLLGGEIAIDSTPGEG 627 Query: 207 VVLSALLE 214 L Sbjct: 628 TAFYISLP 635 >gi|154490016|ref|ZP_02030277.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC 43184] gi|154089458|gb|EDN88502.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC 43184] Length = 720 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 19/233 (8%), Positives = 60/233 (25%), Gaps = 21/233 (9%) Query: 2 AKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + + L + + + H+I +P+ AI +L E ++E + +++ + Sbjct: 486 TRQSELEIQKVREADKLKSAFLANMSHEIRTPLNAIIGFSNILAETDDKEEKEEFVKIIN 545 Query: 58 MSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWT- 105 ++ + L+ + ++ + QV + + + Sbjct: 546 KNSDLLLRLITDILDFSKIESGVLDYSLSDTSLKDIFHEQFQVHAMKMPEKVSLICDFDA 605 Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++L NL A G + + + G Sbjct: 606 LPDIFVHTDPKRVTQVLSNLISNAVKFTEVGSIRFSYRIV-EKYVLVEVIDTGIGISPQH 664 Query: 163 KFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + + L Sbjct: 665 QQAIFDRFVKVNSFKQGTGLGLTICKTIIEALNGTIGVDSRPGEGARFWFTLP 717 >gi|149922685|ref|ZP_01911112.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] gi|149816482|gb|EDM75981.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] Length = 373 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 17/231 (7%) Query: 2 AKNICFNL-SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L S L + ++ S H++ +P+ A+ +LL + +L Sbjct: 127 REQLRTKLAQSERLASIGMMASVFAHEVGNPLNAMFLQAQLLRRRVDRPDRGELGPKVDA 186 Query: 59 S---AIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWT-- 105 + Y + + DI + ++ Sbjct: 187 LLGEIQRLNTLLDEFRSYHRPTKLQLSMTDIAEVLAKVEHTLTLQAKDRGLLIESEIEGE 246 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++ LNL A ++ G+V + E + + PE Sbjct: 247 LPRLFASANKLEQVFLNLCKNALEAMHERGEVLRLRAQATEEGGVRVDVIDEGVGVPEDL 306 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + V + + + D + L + Sbjct: 307 PDLFAPFATTKSSGMGLGLPLVRDIVRAHGGDIAYAGNDSGGTTFTVTLPR 357 >gi|89054222|ref|YP_509673.1| periplasmic sensor signal transduction histidine kinase [Jannaschia sp. CCS1] gi|88863771|gb|ABD54648.1| periplasmic sensor signal transduction histidine kinase [Jannaschia sp. CCS1] Length = 621 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 16/230 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54 + K + + L AL + + + H+ P+ A+ + E LD +++ + R Sbjct: 375 LRKTQAELVQAGKLAALGQMSAALSHEFNQPLAAVKSYAENAGTFLDRGRMDEARGNIQR 434 Query: 55 ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTG 106 + + F R TG V + D +++ + Sbjct: 435 ISGLADRMAAISKHLRNFARRPGDKTGPVPLRPVIADALELMAPRLRDADVRYDPPRVEV 494 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFT 165 ++++NL A ++ + TI + + + +++ G Sbjct: 495 WARGGRVRLQQVVVNLLGNALDAMAQVDPPTIEITLTGGDAPQIAVRDIGPGLSDEALAH 554 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + RL E + LE Sbjct: 555 AFDPFFTTKEPGQGLGLGLSISYNIIGDFGGRLSAENHAGGGAIFRVTLE 604 >gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 890 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 30/241 (12%) Query: 2 AKNICFNLS-----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 AK N S + + + H+I +P+ AI E L E + E Sbjct: 362 AKEQALNAQRAAEVSEAAKSRFLANMSHEIRTPMTAILGYSESLRESNLSREERNQFIDI 421 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-------------QVIEDFIAVDKRVQVS 103 + + L + +++ + + + ++ Sbjct: 422 IVRSGRHLLTIINDILDLSKIEAEKIEIEHMQISLPNLIEDLRSHIGMRAHEKGLTLDIT 481 Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLA 158 +IL NL A +G + F++ G Sbjct: 482 PKLPLPAHFESDPTRLKQILFNLGANATKFTHKGSIHFGVSYEKDTNLLRFTVTDTGIGL 541 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E +I + + Y LAH L + S Sbjct: 542 GPGELK-KIFEPFVQADSSTTRQYGGTGLGLYISRQLAHMLGGELTVDSSQGEGSRFSVT 600 Query: 213 L 213 + Sbjct: 601 I 601 >gi|75908983|ref|YP_323279.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702708|gb|ABA22384.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1557 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 54/217 (24%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + + H++ +P+ I +LL ++E ++ + + Sbjct: 1190 AVLSHELRTPLNPIMGWAKLLRTRTYKEETIKQGLETIERNAKLQTQLIDDLLDVSRILR 1249 Query: 71 ---FGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLF 123 VD + + + + + + +++ NL Sbjct: 1250 GKLNLNVCLVDLRNTVQAGLETVRLAAEAKSIAIHTILSDEPVQVMGDGDRLQQVIWNLV 1309 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178 A P G+V + ++ + + G Sbjct: 1310 SNAVKFTPSEGRVEVRLEQVGRDAQIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGG 1369 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + ++ + +D + L Sbjct: 1370 LGLGLAIVHHLVELHGGTVVAQSAGEDQGATFTVKLP 1406 >gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 957 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 74/241 (30%), Gaps = 32/241 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------------DEVGIEDEVM 50 + M S + H++ +P+ + +L+LL D +E +++ Sbjct: 466 TREREVEQMK--NEFVSMVSHELRTPLASTQGALQLLLGDSERGKSGLIRDMSSVERDLL 523 Query: 51 QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 Q ++ + + ++L + D V Sbjct: 524 QRALTNTNRLLRLVNDVLDIAKIERGQLQLQRHPVAPEEICRNAIDDLASFARQQQVTIS 583 Query: 100 VQVSWTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + V +D+ R+R ++L+NL A P G +V +SV + FS++ G Sbjct: 584 LDVPPNLPLVDVDRDRIVQVLVNLLSNAIKFSPAGQQVVVSVAHEQGMVRFSVRDWGPGI 643 Query: 159 RFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + + + L + R+ + S + Sbjct: 644 SRADQLKLFQKFQQLDQSKSNVRGGSGLGLAISRQLVELHGGRIWVDSDVGFGSTFSFTV 703 Query: 214 E 214 Sbjct: 704 P 704 >gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1177 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 58/237 (24%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++ + + + H+I +P+ + E+L E + E + I + Sbjct: 778 LQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLETPLNAEQTRYINSMQHAG 837 Query: 61 IIR------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104 + + +++ D + + + + Sbjct: 838 DALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISITDFFRLQALNHNLSLVVEIAPEL 897 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++L NL A GG D+ + G + Sbjct: 898 EQQYVLGDAGRVRQVLYNLLGNALKFTEEGGVSLHLSLDANQHIHTRVSDTGIGIAPQQL 957 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + R+ E I+ L Sbjct: 958 -ERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGGRIWVESIEGQGSTFHMTLP 1013 >gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6] Length = 830 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 65/240 (27%), Gaps = 30/240 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55 AK + + S + H++ +P+ AI +LL + + I Sbjct: 448 AKEDAEAANRAK--STFLSMMSHELRTPLTAIIGYSQLLGQLMTVGDYEGVKSDLHHIYT 505 Query: 56 SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 S + + V+ + + + ++ + ++ Sbjct: 506 SGKHLLALINDVIELSRIDSGQRNLDMRPVNIVDLVTEAVSMVRPLVTRNRNTLQIECPL 565 Query: 108 KIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARF 160 I + + +I+LNL A G ++ D + E F + G Sbjct: 566 DIPIVITDSLKVRQIILNLLNNAAKFTENGEITFTTIYDPQGEVPTLIFQIADTGIGIDQ 625 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D V + + L + + + + L Sbjct: 626 RQIP-RIFDPFVQVDEALNRRYEGTGLGLALCRRLCEVLGGEISVQSTLGVGSIFTVRLP 684 >gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1269 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 20/239 (8%), Positives = 63/239 (26%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + + + H+I +PI A+ E++ ++++++ + + Sbjct: 644 MEERRARAANEAK--SNFLANMSHEIRTPINAVLGMNEVILRECKDEKILEYAQNIEGAG 701 Query: 61 IIRLKFMRLAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDKRVQVSW 104 L + ++ + + + + + + + Sbjct: 702 RTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNMVHIKAEQKILDLKFDIDEDL 761 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 +I++N+ A GG + + G + Sbjct: 762 PDTMYGDEMRLRQIIVNVLNNAVKYTEEGGVTLEATGIRDYGDTITLKIKITDTGKGIKK 821 Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E T TI+ + L ++ + + + +L Sbjct: 822 EELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMGGSIMVDSVYGKGSTFTIVLP 880 >gi|281491701|ref|YP_003353681.1| osmosensitive K+ channel sensor histidine kinase [Lactococcus lactis subsp. lactis KF147] gi|281375418|gb|ABX75619.2| Osmosensitive K+ channel sensor histidine kinase [Lactococcus lactis subsp. lactis KF147] Length = 876 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSM 58 + + L L I HD+ +P+ +I +LL + +Q+ Sbjct: 634 QQKNEIQIEQEQLRVNLLRAISHDLRTPLTSISGHAKLLMKNDSTINKLQIQELSAYIYD 693 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--------- 109 ++ + + T + + + + E K V + Sbjct: 694 DSMWLINLVENLLSITRLDEKIELKLEANIIDEVVEEALKHVDRHLEQHEFSLNLADELL 753 Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKF 164 ++++NL A P K+ + + +E + + NG EK Sbjct: 754 MAKMDVALMIQVIVNLINNAVKYTPINSKIELQTKKINDELVLEVSDNGPGITDKAKEKI 813 Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +D + + + ++ + + + L Sbjct: 814 FDLFYTDENRQVDSKRGLGLGLSLCKSIILAHGGQIYVKDNQPNGAIFGFKLP 866 >gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 697 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+N S + + + H++ +P+ AI +L+ ++ E + + Sbjct: 305 ARNEAERASRLK--DEFLATLSHELRTPLNAILGWSQLILSGNLKKEDIHRGLETIERNA 362 Query: 62 IRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + D + + ++ + G+K Sbjct: 363 RVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKPTAQAKGVILKKTLGKKF 422 Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162 D S +IL NL + P+GGK+ ++V+ + +G+ P Sbjct: 423 DSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQRNLFLEIRISDSGSGITSAFMPY 482 Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 F + G+ + V L + + E + L Sbjct: 483 VFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESPGEGQGSSFIVNLP 537 >gi|291440124|ref|ZP_06579514.1| two component sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291343019|gb|EFE69975.1| two component sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 455 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 13/203 (6%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 H++ +PI + LEL+ +E +E ++L+ ++ + R F Sbjct: 250 HELRTPITIVRGHLELMGEEPAEREETVRLVTDELDRMSRIVEDLLLLARAERPDFVTPE 309 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 V D+ A D ++ + E + + + ++ L A G Sbjct: 310 PVQLAELTADVFVKARTLGARDWQLAGTADREVVLDPQRITQAMVQLAQNAVQHTTTGQT 369 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190 + I + + + +G+ R + F + G + V +A Sbjct: 370 IRIGSRAEGSRIELYVADSGSGVRPQDRELIFERFRRGTSRRGAHGSGAGLGLSIVKAIA 429 Query: 191 HENKIRLLPEIIDDHNVVLSALL 213 + R+ + + L Sbjct: 430 EGHGGRVRLDDTEGGGATFVLTL 452 >gi|283852334|ref|ZP_06369605.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572291|gb|EFC20280.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 480 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 20/230 (8%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------L 55 N L + + AL + + H++ +PI I +++ L E + Sbjct: 235 NQEHLLQARKMAALGTFTAGVAHELNNPINNITLTVDALLEDHADYLDDDGRELVADIAG 294 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGE 107 + A ++ + + D+ + Sbjct: 295 QADRAADIVRNLLDFSRTERPPLLPLAARDVAASSLALVRNQLLGAGLAVAMQVQEDLPP 354 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166 R ++L+N+ + A + PRGG+VT+SV +N E F++ +G PE Sbjct: 355 IRGDLRSLQQVLVNILLNAVQATPRGGRVTLSVAAGENGETCFAVADSGPGV-SPEVRQH 413 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L + R+ E + V + L Sbjct: 414 MFEPFYTTKGVGKGTGLGLAVAYSLTRRHGGRIEVESPETGGAVFTVCLP 463 >gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 761 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L + A + + + H++ +P+ +I +LL E + Sbjct: 503 RKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEIAGPLNEKQS 562 Query: 54 RLSS-------MSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDK 98 R I + L+ +G D + I V+ + Sbjct: 563 RYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQAQEKNI 622 Query: 99 RVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + ++ + +I+ NL A P GG + ++++ +K G Sbjct: 623 ILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSIDVTLKQEGLLVTIEVKDTG 682 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + F +I + + + V + + E Sbjct: 683 IGI-PEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVESKIGEGSSF 741 Query: 210 SALLE 214 L Sbjct: 742 RFELP 746 >gi|308125760|ref|ZP_05777151.2| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus K5030] gi|308115384|gb|EFO52924.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus K5030] Length = 575 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L L + + I H++ +P+ AI + E L + D V + Sbjct: 332 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 391 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103 S + + + + + Sbjct: 392 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 451 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + + ++L+NL A ++ + +N+ + + NG Sbjct: 452 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 511 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L S L Sbjct: 512 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 565 >gi|260902810|ref|ZP_05911205.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308108624|gb|EFO46164.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 600 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L L + + I H++ +P+ AI + E L + D V + Sbjct: 357 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 416 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103 S + + + + + Sbjct: 417 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 476 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + + ++L+NL A ++ + +N+ + + NG Sbjct: 477 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L S L Sbjct: 537 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 590 >gi|239908072|ref|YP_002954813.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797938|dbj|BAH76927.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 2042 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 53/225 (23%), Gaps = 26/225 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---------- 65 + + + H+I +P+ + L+LLD ++ E + + + ++ + Sbjct: 1667 SEFLANMSHEIRTPLNGVLGMLQLLDGTDLDAEQGEYVDNAVKASKRLTRLLSDILDLSL 1726 Query: 66 ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKIL 119 + + D + D+ + + V + G +IL Sbjct: 1727 VESGRLVIRQEAVDPADLRGAVMDLFSLPAREKGLALSVALDPSLPGRLWADEARLRQIL 1786 Query: 120 LNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171 NL A D+ + + G E Sbjct: 1787 FNLVGNAVKFTDAGGVSVHIAPASRQFDAAFHLLVIVTDTGIGIPDDELGVIFEPFGQVE 1846 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + E L Sbjct: 1847 GVYVRRFGGAGLGLSIVRRLVRLMGGEIAVESELGRGTSFHVSLP 1891 >gi|238892577|ref|YP_002917311.1| putative histidine protein kinase [Klebsiella pneumoniae NTUH-K2044] gi|238544893|dbj|BAH61244.1| putative histidine protein kinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 761 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L M V L + HD + + I SLEL++ + + ++ Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + +V L ++ +++ + +++ + Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506 Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL M A ++ +VT S ++ + +G+ Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621 >gi|197120207|ref|YP_002140634.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197089567|gb|ACH40838.1| sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 352 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 57/217 (26%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + HD+ SP+ I ++ L + + + ++ + S+ + + Sbjct: 118 FVAMMTHDLKSPLTVIMGYIQALVGEKAKIDASLHLFLGEMDKSSAKMLSMIDDVLDAYR 177 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVD-----------KRVQVSWTGEKIDLSRERAKILL 120 G + DI ++E + S++ +++ Sbjct: 178 LEAGLLQIDRCRCDIRPLLEGCSRDGEREAAVHGSSFQSELCDEIPPLELDSKQISRVFA 237 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STID 177 NL A PR G +T S + + G E Sbjct: 238 NLIGNAVKFTPRRGTITFSSEVRDGFLRVQVADTGIGIPPEELPRIFNKYFRAQGAHGFK 297 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E S LL Sbjct: 298 GTGLGLTISKAIVEAHGGSIGVESTAGKGSRFSVLLP 334 >gi|153839645|ref|ZP_01992312.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus AQ3810] gi|149746835|gb|EDM57823.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus AQ3810] Length = 398 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L L + + I H++ +P+ AI + E L + D V + Sbjct: 155 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 214 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103 S + + + + + Sbjct: 215 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 274 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + + ++L+NL A ++ + +N+ + + NG Sbjct: 275 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 334 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L S L Sbjct: 335 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 388 >gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 461 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 59/225 (26%), Gaps = 23/225 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69 L + + + H++ +P+ ++ E++ E + E + + + L+ + Sbjct: 217 RLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGIIMEKGENLLQLITS 276 Query: 70 AFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + V + I + S + Sbjct: 277 ILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCDPSPLPRIHADRDKL 336 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV-----D 169 + L+NL A P GG +T++ + + +G D Sbjct: 337 RQCLVNLCSNAVKFTPPGGSITVNAEVLQGERLAIHVVDSGIGIPEEHLAKVFDVFYQVD 396 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + V + + + + LL Sbjct: 397 GSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSIFTVLLP 441 >gi|28897689|ref|NP_797294.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus RIMD 2210633] gi|260879434|ref|ZP_05891789.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus AN-5034] gi|260898325|ref|ZP_05906821.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus Peru-466] gi|28805902|dbj|BAC59178.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087999|gb|EFO37694.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus Peru-466] gi|308093196|gb|EFO42891.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus AN-5034] Length = 600 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L L + + I H++ +P+ AI + E L + D V + Sbjct: 357 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 416 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103 S + + + + + Sbjct: 417 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 476 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + + ++L+NL A ++ + +N+ + + NG Sbjct: 477 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L S L Sbjct: 537 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 590 >gi|330003775|ref|ZP_08304762.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] gi|328536808|gb|EGF63119.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Klebsiella sp. MS 92-3] Length = 1080 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55 + + + + + + + H++ +P+ AI LELL + + + Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNGGQRKEAIELAGST 642 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103 + + + + +G D+ Q++ + + Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL NL A + +++ E + +G Sbjct: 703 EGNMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLTPANETQGELALMVSDSGCGIS 762 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + L + RL + L Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820 >gi|326424287|ref|NP_762701.2| CheY-like receiver [Vibrio vulnificus CMCP6] gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6] Length = 881 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + ++ + + H+I +P+ I E+L + + + +++ S+ Sbjct: 363 AKESAISANRAK--SVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEILGDIDTSSQ 420 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + + + + E I + + + Sbjct: 421 SLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATSKNIELHITMGEDIP 480 Query: 106 GEKIDLSRERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A + D + F + G Sbjct: 481 AKVMADDHRIKQVLTNLVGNAIKFTKEGYISTFVNYQADEHDHQGYLTFKVTDTGIGIDQ 540 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + L L S + Sbjct: 541 AKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGELTATSTKGLGSCFSFTIP 599 >gi|302669411|ref|YP_003829371.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] gi|302393884|gb|ADL32789.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] Length = 504 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 68/241 (28%), Gaps = 26/241 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + ++ + L S I HD+ +PI AI + L D + + +++I Sbjct: 246 LKESAEEKILREKQNKELISNISHDLKTPITAIKGYSQGLLEGVADNPEKQMKYIRIINN 305 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103 + + + L + + + + Sbjct: 306 KANDMNNLINELTLYSSIDNNRIPYNFIRLNVGEYFGDCIEEIGADLESKSIKLNYSNLT 365 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLAR 159 + + + +++ N+ + L R ++ I + D + L+ NG Sbjct: 366 TPDTQIVADPEQIKRVINNVVSNSVKYLDRDDGTGQIDIRILDEIDSIRVELEDNGKGIA 425 Query: 160 FPEK---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + I V + ++ + + + +L Sbjct: 426 QRDIPNIFDRFYRTDASRNSKQGGSGIGLSIVKKIIEDHGGYIWATSHEGEGTCMHFVLR 485 Query: 215 K 215 K Sbjct: 486 K 486 >gi|296446460|ref|ZP_06888404.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296256095|gb|EFH03178.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 352 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 68/234 (29%), Gaps = 25/234 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 +++ + + + H++ +P+ ++ +E L D+ + + ++R + Sbjct: 112 RDLTESRRVERMRVDFVANASHELRTPLASLLGFVETLQGPARDDAKARERFLSIMREQA 171 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------- 108 + + + ++ I +G + Sbjct: 172 QRMSRLVDDLLSLSRIEQHLHLRPDTPVDLAILVAHIVDTLGPMAEDSGIELKLDATGPV 231 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 E A++ NL A G V IS+ +FS++ +G PE + Sbjct: 232 VVPGDRDELARVAENLIENAIKYGA--GPVEISLAPLGASAVFSVRDHGPGI-SPEHLPR 288 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ RL + D L Sbjct: 289 LTERFYRVDAGKSRAKGGTGLGLAIVKHIVARHRGRLAIDSAPDKGATFRVFLP 342 >gi|317152010|ref|YP_004120058.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942261|gb|ADU61312.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 474 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICF---NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLI 53 + + L + + + + H+I +P+G I +S EL+ + + +++ Sbjct: 243 LREKEQLIFELQQQEKLAGMGRMVAGVAHEIRNPLGIICSSAELILKKAVNEQSPHTRIL 302 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVS---- 103 + A + + Y + L D V + V + Sbjct: 303 QALHEEAKRLTRTVGEFLDYARPKKPTMADVNVGRLLDQVAVFMEPECEKLGVTIDREYS 362 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + NL A ++ +GG+V + + +++ G PE Sbjct: 363 GDLSAKGDKDLLYRAFYNLIANALQAMDKGGQVFLRAAREEGRLHVTVQDTGPG-FAPEH 421 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + V + + + + DD + + Sbjct: 422 IEKVRDPFFTTKDTGTGLGLALVSAILESHGVEMHLSNADDGGARVDIIFP 472 >gi|260173810|ref|ZP_05760222.1| putative two-component regulator sensor kinase [Bacteroides sp. D2] gi|315922073|ref|ZP_07918313.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695948|gb|EFS32783.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 754 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44 K+ L + L+A + + H+I +P+ +I +L Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572 Query: 45 -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +++LI + I +M +F + + + QV+ + Sbjct: 573 GTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRLEFLK 632 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 + E ++L N A K+ + ++ G Sbjct: 633 EVDNIPLEINVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPDEGRVRIYVEDTGRGI 692 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + ++ + R+ + + +L Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGRIELKSEVGKGSRFTVVLP 749 >gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21] gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21] Length = 984 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 91] Length = 927 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 544 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663 Query: 208 VLSALLE 214 ++ L Sbjct: 664 TVTVALP 670 >gi|119510644|ref|ZP_01629773.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119464695|gb|EAW45603.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 752 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 77/241 (31%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 ++ F ++ + L S I HD+ + + I +LL D +++++ +++ Sbjct: 374 ESQLFRTQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTKRLLEILEINA 433 Query: 58 MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 +K + ++ + +I +++++ + + E +S Sbjct: 434 KRGADLVKQVLSFARGVEGKRITLQIRHLIVEIAKILKETFPKSIEIHTNIPNELWLVSG 493 Query: 114 ER---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155 + ++++NL + A ++P G ++ + ++ G Sbjct: 494 DSTQLHQVVMNLCVNARDAMPHRGILSISAENFVVDENYARMNLEAEAGLYVVITVTDTG 553 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + + + VI + + + + L Sbjct: 554 VGI-PQETLDRIFEPFFTTKPVGQGTGLGLSTVIGIVKSHGGFINVYSEVGNGTSFKVYL 612 Query: 214 E 214 Sbjct: 613 P 613 >gi|163941050|ref|YP_001645934.1| histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163863247|gb|ABY44306.1| histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 418 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 16/226 (7%) Query: 4 NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 I + + + + L + I H+I +P+ + +LL ++ + + + + + Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252 Query: 60 AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + T + +I + + K+ + + Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + L N+ ++ GG + I++Q K + + G + +I Sbjct: 313 NANTEKLKICLTNIIQNGIEAMKNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIK-RIA 371 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417 >gi|114320848|ref|YP_742531.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114227242|gb|ABI57041.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 691 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 60/228 (26%), Gaps = 21/228 (9%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAI 61 + + L AL L + + H+I +P I ++++L + V + + L Sbjct: 442 QQLVVAEKLAALGELTAGVAHEINNPTAVILGNMDVLIQELGEGVQPVRREVDLIIEQVY 501 Query: 62 IRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + Y+ D + +I + +W G + Sbjct: 502 RIRDIVDNLLQYSRPGDYVGIVSETDVNTVVQQSVDLIGHLSRRREVAVETWLGACRTVR 561 Query: 113 RERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ L + + G + + S+ NG I Sbjct: 562 ISPRELQQVLVNLLLNALHAVADRSGRVRVATTDWDDRGVVISVSDNGVGIPEQAL-DHI 620 Query: 168 VDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ + L ++ E + L Sbjct: 621 FNPFYSTRVEGEGTGLGLSISYGLIRRYGGQITVESQEGEGSRFRVWL 668 >gi|90422120|ref|YP_530490.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90104134|gb|ABD86171.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 566 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/246 (10%), Positives = 65/246 (26%), Gaps = 35/246 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + + +++ + + H++ +P+ ++ +++E L ++++I Sbjct: 322 MTEALYNRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKNEKSRSRLLEVIEHDV 378 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQV 102 + + VD L + V + V Sbjct: 379 KRLDRLISDISDASRLDAELQRQDVAPVDLRRLLATLTSVANETKLGTNVGVEVRFEGAG 438 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ NL + A + GGKV I + K E + +G R Sbjct: 439 NDAFWVPGHDSRLGQVISNLLVNAQSFSSAGGKVRIVCRRRKTEIEIVVDDDGPGIRDDA 498 Query: 163 KFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNVV 208 + + + + ++ E Sbjct: 499 LEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGGKIWAENRPGPVDADGEPSFAGAR 558 Query: 209 LSALLE 214 L Sbjct: 559 FVVRLP 564 >gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1] Length = 2544 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 64/246 (26%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 +N+ + ++ + + H++ +P+ + + ELL + + + +++ +SA Sbjct: 1909 KRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSELNRDQLEMADSIRVSAD 1968 Query: 62 IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103 + M+L D + + K V++ Sbjct: 1969 LLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKNVKIVQSIN 2028 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLA 158 ++L NL + G F ++ G Sbjct: 2029 LPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETQEHATLTFWVRDTGIGI 2088 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--L 209 + ++ + L K ++ E ++ Sbjct: 2089 PPQQL-AKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEENVGTTAWF 2147 Query: 210 SALLEK 215 + EK Sbjct: 2148 TVTFEK 2153 >gi|325125675|gb|ADY85005.1| Sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 552 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ E + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 599 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57 +++ L + + H++ +P+ + E + + + E ++I S Sbjct: 355 RDMTEERRHDKLRKDFIANVSHELRTPVSMLQGYSEAIIDDIAGSEEDKKEFAKIIYDES 414 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWT 105 + + + L D I + V Sbjct: 415 LRMGRLVNELLDLARMEAGHIELHMEAVELGAFSDRIVRKFQGYAKDEGVALRLDHVEDG 474 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 ++L NL A G+VT+ V+ ++ F + G+ + Sbjct: 475 YTNSFDPDRIEQVLTNLIHNAIRHTGENGRVTVKVRSNEYGVKFDVIDTGSGIPEEDLPY 534 Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K ++ D S + Sbjct: 535 VFERFYKADKARTRARGGTGLGLAIAKNIVDAHKGQISVHSKIDEGTTFSFFIP 588 >gi|271502325|ref|YP_003335351.1| integral membrane sensor signal transduction histidine kinase [Dickeya dadantii Ech586] gi|270345880|gb|ACZ78645.1| integral membrane sensor signal transduction histidine kinase [Dickeya dadantii Ech586] Length = 470 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 + S + L+A LL + + HD+ +P+ I + E++ + E + Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGQEDEYLAESINKDIEE 276 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ D LG++ + Sbjct: 277 CNAIIEQFIDYLRTGQEMQMEVADLNAILGEVVASESGYEREIDSELTLGELPMKVSPLS 336 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171 + + NL + A +V+ + F ++ +G F V G+ Sbjct: 337 IKRAVANLVVNAARYGNGWIRVSSGRELQ--RAWFQVEDDGPGIDPSQLAHLFQPFVRGD 394 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + + A L Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHNGSLDVGKSERGGLRVRAYLP 437 >gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 970 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 53/237 (22%), Gaps = 28/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + + + H++ +P+ AI E+L E + E + + Sbjct: 467 ARQAAEAANQAK--STFLANMSHELRTPMNAIIGYSEMLIEEAADLEPEEFVPDLQKIQA 524 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------------- 106 + L G D+ ++ V + Sbjct: 525 AGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIATIQPLLEKNSNTLEVKAPT 584 Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + L NL A RG + F + G P++ Sbjct: 585 DLGSMHADLTKVRQSLFNLLSNACKFTDRGTITLTVTRQDDA-INFKVSDTGIGM-TPDQ 642 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + E + L Sbjct: 643 MARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITLESTPGVGTTFTVSLP 699 >gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 792 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 26/219 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKF------- 66 + + H++ +P+ AI ELL + V++ + + + + Sbjct: 566 ANMSHELRTPLNAILGYAELLRDGLYGELPDRAKSVLERVESNGAHLLGLINDVLDLSKL 625 Query: 67 -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + Y+ +G + + + R ++L+N Sbjct: 626 EAGELSLVLDEYSMRNIVEQAIGATYSLAQAKGLRIDQTIEEPMPLGRGDERRLTQVLIN 685 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 + A G V I Q + + G PE +I + Sbjct: 686 ILSNAIKFTDE-GYVAIKAQTLADMFEIVVTDTGPGI-PPEDQARIFEAFQQGDNTSTRL 743 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L+ Sbjct: 744 KGGTGLGLSISRRFVEMHGGAISVASKLGEGSSFTILVP 782 >gi|104773979|ref|YP_618959.1| phosphate regulon sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513987|ref|YP_812893.1| Signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423060|emb|CAI97765.1| Phosphate regulon sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093302|gb|ABJ58455.1| Signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 552 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ E + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|307301500|ref|ZP_07581260.1| histidine kinase [Sinorhizobium meliloti BL225C] gi|152171|gb|AAA63511.1| dicarboxylate sensor protein [Sinorhizobium meliloti] gi|306903557|gb|EFN34145.1| histidine kinase [Sinorhizobium meliloti BL225C] Length = 621 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48 + + + L + + + H+I P+ I + + Sbjct: 390 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 449 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 + +L +F R G + + F +++ + Sbjct: 450 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 509 Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162 + ++L+NL A ++ I V+ ++ NG + Sbjct: 510 GLQALGNRIRLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGIALTVADNGPGI-AAD 568 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ S D + + + + E + L+K Sbjct: 569 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFTVNLKK 620 >gi|152172|gb|AAA63512.1| dicarboxylate sensor protein [Sinorhizobium meliloti] Length = 616 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48 + + + L + + + H+I P+ I + + Sbjct: 385 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 444 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 + +L +F R G + + F +++ + Sbjct: 445 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 504 Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162 + ++L+NL A ++ I V+ ++ NG + Sbjct: 505 GLQALGNRIRLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGIALTVADNGPGI-AAD 563 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ S D + + + + E + L+K Sbjct: 564 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFTVNLKK 615 >gi|308047811|ref|YP_003911377.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ferrimonas balearica DSM 9799] gi|307630001|gb|ADN74303.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ferrimonas balearica DSM 9799] Length = 351 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 70/234 (29%), Gaps = 23/234 (9%) Query: 2 AKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + I L LL + H+I +P+G + + +LL+ + E+ + + Sbjct: 112 QQRISQELQHYAQQHAAQLLVRGLAHEIKNPLGGLRGAAQLLERELDDPELKEFTTIIIE 171 Query: 59 SAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + G + L + ++ E ++ + D Sbjct: 172 QSDRLRGLVDRLLGPQYPGTWAEGNVHRLLEQVARLCEMEATGTLVIERDYDPSIPDFVM 231 Query: 114 ERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + ++ L + + G+ TI+ + + S+ +G Sbjct: 232 DAEQLQQALLNIVRNAVQALDGQGRIVLRTRSQGQTTIAGRRHRQVVAVSVVDDGPGIDP 291 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + D + + +++ R+ E H + LL Sbjct: 292 S-IQDTLFYPMVTNKADGSGLGLSIAQKIVSQHQGRIELESWPGH-TEFTLLLP 343 >gi|322420752|ref|YP_004199975.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127139|gb|ADW14699.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 672 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 78/241 (32%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49 + + + S + L + + H++ +P+ I ++++L + + Sbjct: 421 LKEAQAKLIQSEKMATLGEVIAGAAHELNNPLAGILGAIQMLRGSALAHPIDPELMEGID 480 Query: 50 -MQLIRLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVS 103 ++ I +++ ++F A +D L D +++ +V++ Sbjct: 481 VLESIESAAIRCQKIVEDLVRFTTQARCNFSEMDINQVLKDTMEIMAGPFGEQKIKVKLH 540 Query: 104 WTGEKIDLSRERAK---ILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKING 155 E + + K + +NL A ++LP GG++ I + + ++ NG Sbjct: 541 LDPEVPQIDGDFVKLLEVYVNLLQNAKSALPNGGRIDISTSLVKKYGEQLQVAVVIRDNG 600 Query: 156 NLARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I D + + + + + ++ + Sbjct: 601 CGIPPQNL-AKIFDPFFTTKPAGKGPGLGLTVSYGIVKRHGGDIDVRSTVGKGTEVTVTV 659 Query: 214 E 214 Sbjct: 660 P 660 >gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)] gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)] Length = 984 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|229195596|ref|ZP_04322362.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293] gi|228587845|gb|EEK45897.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293] Length = 466 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 64/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + ++K G + + Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H ++ + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHEGQWRIESEKGNGTTVSIKLK 458 >gi|220933213|ref|YP_002512112.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219994523|gb|ACL71125.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 485 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 70/227 (30%), Gaps = 14/227 (6%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + L S L A+ L + + H++ SP+G I + L + + IR Sbjct: 255 QRALEARLRESEKLAAIGQLAAGVAHELGSPLGVIDGKAQRGLRRLMDDDPLKRDLGEIR 314 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL 111 ++ + L ++ + + V+V GE L Sbjct: 315 AEVARMGGIVRQLMDFGRRNPLRRRPESLPELVRAEARRVTRGGCRVAVEVQEGGEMPPL 374 Query: 112 SRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +R+++ L + ++ +V ++ + ++ +G ++ + Sbjct: 375 PLDRSRLEQALGNLLRNAVQAARSRVRVAWSHDDRQARVVVEDDGPGIDPS-VRARLFEP 433 Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ L+ + + L + Sbjct: 434 FFTTKAVGEGTGLGLSVAHGAVSDHGGTLVVDRSPLGGARFTLSLPR 480 >gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1680 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 74/242 (30%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 ++I L S + H++ +P+ ++ +L LL +E + +++++ + Sbjct: 1433 QDITERRELDRLKTEFISVVSHELRTPLTSMRGALGLLNAGVLQEEPETVEHMLKIVLRN 1492 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTG 106 I + L +G V + + ++ ++ D + + + Sbjct: 1493 CDRLIRLVNDILDLERLESGKVRLIKEVCQVDNLLTDAVETISAMATEASITIELTSISA 1552 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT---------ISVQDSKNENIFSLKINGNL 157 + L NL A G K+ S + + +FS+K G Sbjct: 1553 YVWASHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFNDPDSTAQTPSFVLFSVKDQGRG 1612 Query: 158 ARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + T VD + + + ++ R+ + I Sbjct: 1613 IPTNKLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYFT 1672 Query: 213 LE 214 + Sbjct: 1673 VP 1674 >gi|153007726|ref|YP_001368941.1| histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151559614|gb|ABS13112.1| histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 430 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 66/240 (27%), Gaps = 30/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++ + + + + H++ +P+ ++ +E L + D + +++ + Sbjct: 191 QSETRRID--RMRSDFIANASHELRTPLASLRGFIETLQGPARNDAAARDRFLDIMQKQA 248 Query: 58 MSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + +R Sbjct: 249 ERMSRLIDDLLSLSRLEMRAHLAVNECVDMTSILNHVADTLTPLAAGLDISIERQLPDHP 308 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 E ++ NL A G +V + + + + E + S++ G Sbjct: 309 VTVTGARDELIQVFQNLVENACKYGQAGKRVIVKLDEDNSGSSAEVVASVQDFGPGI-AA 367 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ + + V + ++ RL+ + + K Sbjct: 368 EHLPRLTERFYRIDVETSRAQKGTGLGLAIVKHILARHRGRLVVRSQLGEGSTFTVRMPK 427 >gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39] gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39] Length = 984 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + E I + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 731 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 66/241 (27%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + NL + + + H++ +P+ +I L+ + + + L Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQFPEGMERENRYLDL 383 Query: 56 SSMSAIIRLKFMRL-----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 S + L + F + + + + E + + + Sbjct: 384 IFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLEMTFE 443 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + E + +++LNL A GK+ I++ +N +++ +G Sbjct: 444 FFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQLAVQDSGIGI 503 Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E + + + V + + + E + Sbjct: 504 PTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIF 563 Query: 214 E 214 Sbjct: 564 P 564 >gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] Length = 731 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 66/241 (27%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + NL + + + H++ +P+ +I L+ + + + L Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQFPEGMERENRYLDL 383 Query: 56 SSMSAIIRLKFMRL-----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 S + L + F + + + + E + + + Sbjct: 384 IFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLEMTFE 443 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + E + +++LNL A GK+ I++ +N +++ +G Sbjct: 444 FFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQLAVQDSGIGI 503 Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E + + + V + + + E + Sbjct: 504 PTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIF 563 Query: 214 E 214 Sbjct: 564 P 564 >gi|116626863|ref|YP_829019.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116230025|gb|ABJ88734.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 822 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 59/218 (27%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVG--------------IEDEVMQLIRLSSMSAIIRLK 65 S + H++ +P+ AI ELL E + + + + Sbjct: 603 SLVSHEMRTPLTAIQGMTELLAAYDVEPSRRREMNLAINDEVKRLARMITEYLDITRLES 662 Query: 66 FMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 V+ L IE + R + + ++ + NL Sbjct: 663 GATQMRMAAVRVESILERILILIEPIAAQRQIQLVRQIPADLPAVLADPDLFSRAVENLV 722 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A P G VT+S + ++ + G + +I + + + Sbjct: 723 TNAVKYSPNGTTVTVSARAEEDCLWIDVADQGYGIPETDLS-RIFEKFYRVPRVQDAGVP 781 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + + + + + Sbjct: 782 GTGLGLSLVREIAELHHGSVAVRSEVGKGSTFTLRIPR 819 >gi|291551174|emb|CBL27436.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain [Ruminococcus torques L2-14] Length = 352 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 30/242 (12%) Query: 4 NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLS 56 + + + VA L S I HD+ +PI AI +E + + E M + Sbjct: 102 RLRLKAQAEEKVAFDRENKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIRT 161 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------R 99 + + + +D+ + + D R Sbjct: 162 IYNKANEMNLLINELTLYSKIDTNRIPYNFTTISAKGYFADCAEDLSVELESKGAEFTYR 221 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLA 158 + + I + +++ N+ + + + L NG Sbjct: 222 NFMEEDSKVIVDPEQLRRVINNIVSNSIKYTDKPKVKITMDVKDVGDFIQVELGDNGKGI 281 Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + I V + E+ ++ + + ++ Sbjct: 282 AAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSEEGVGTTMYFVI 341 Query: 214 EK 215 K Sbjct: 342 RK 343 >gi|291535461|emb|CBL08573.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1] Length = 478 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67 S + HD SP+ +I +E + + ++D+ + +I + K + Sbjct: 252 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLLELNKF 311 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121 S D + Q E + T + ++L N Sbjct: 312 GSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYN 371 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177 L A +TI + + S+K G + + + ++ D Sbjct: 372 LIDNALKFSHANSAITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDK 431 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 432 KGTGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 469 >gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] Length = 591 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 68/237 (28%), Gaps = 27/237 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58 M + + + + H++ +P+ + E + + ++ + + +++ Sbjct: 355 MTEERRL----EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYD 410 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG 106 ++ + G VD + I + + ++ V + Sbjct: 411 ESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQS 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L NL A GG VT+ + + F ++ +G + Sbjct: 471 PIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTENSGLTFEVQDSGAGIPEEDI 530 Query: 164 ---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + T + + + ++ + S L Sbjct: 531 PFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSVYLP 587 >gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] Length = 819 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 58/238 (24%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + L + + H++ +P+ + ELL+E +++E + S Sbjct: 200 LARTRAEAANRAKSAFL--ANMSHELRTPMNGVVAMSELLNESALDEEQALYVETIRKSG 257 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 + D + D+ + + + Sbjct: 258 EALLVIINDVLDYSKMEAEKLQLHPAPFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFL 317 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160 I +++ NL A G + + E I S++ G Sbjct: 318 PSHFIGDQGRLRQVMTNLLGNAVKFTLEGHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAP 377 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + N + + L + + S + Sbjct: 378 EMIDHIFGEFNQAEDERNRAFEGTGLGLAITKQLIDLMGGEIWVDSEIGEGSCFSFRI 435 >gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 554 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 60/220 (27%), Gaps = 26/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72 + + H++ +P+ AI +LL ++ I S + + + Sbjct: 313 ATMSHELRTPLNAILGYAQLLHIQKVVPDSHQPYLERILTSGRHLLSLISNVLDFARIEQ 372 Query: 73 -----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKILLNLF 123 V+ + ++ + + +I R ++L+NL Sbjct: 373 GALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDCPPEIGVIETDGRRLRQVLINLL 432 Query: 124 MVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174 A +VT + ++ F++ G P+K ++ V Sbjct: 433 SNAAKFTEDGLIRLEVTAIQHNGRDGLRFAVHDTGIGI-PPDKQHKLFQPFSQVDDSVTR 491 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + S + Sbjct: 492 RYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVWIP 531 >gi|159897122|ref|YP_001543369.1| response regulator receiver sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890161|gb|ABX03241.1| response regulator receiver sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 397 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 28/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSM 58 A N L + I H++ +P+ IH ++LL+ + D + + L Sbjct: 159 ANNRLTRLDQAK--NDFLATISHELRTPLTVIHGYIDLLNMQALGPVSDGQREALELMKR 216 Query: 59 SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------Q 101 ++ L+ + D + I ++ + Sbjct: 217 NSTRLLRHINDLIYLQQVRSNQMDFAQADLRGLVQSICNDMQPTFLEKNQTLVRNIYVSG 276 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + +L A +GG + +SV S++ NG Sbjct: 277 IQTPLMIHMDVHGVDNAVRHLLENATQYTAQGGVIQVSVYQDDQLVRVSIRDNGVGI-PE 335 Query: 162 EKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F +I + V ++I + +A + + E + + L Sbjct: 336 DDFERIFEPFVRLDDTLASIGGAGLGLVIAKHVAEAHNGTVSLESTVGVGSIFTLQLP 393 >gi|57234234|ref|YP_181736.1| sensory box sensor histidine kinase/response regulator [Dehalococcoides ethenogenes 195] gi|57224682|gb|AAW39739.1| sensory box sensor histidine kinase/response regulator [Dehalococcoides ethenogenes 195] Length = 1258 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 + S L A+ + + I H+I +P+ + +L + E +Q+ Sbjct: 884 EEQKKLRHQSEMSSRLAAIGEMAAGIAHEINNPLTGVIGFASILMDREDLPPDAMEQLQI 943 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107 I S + +K M + V S I + ++ + V + Sbjct: 944 INSGSQRVVEIVKRMLTFARQSKPVRSSINITELIDNTLELRSYVLKTANIDVVRHYEPG 1003 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161 L+ + +I + + + K I+V + + S + NG Sbjct: 1004 LPLLTVDSGQIQQVILNLILNAEYSMKKAHEKGTLTITVSRTGDRIRMSFRDNGMGM-SA 1062 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + E+ + E I L Sbjct: 1063 ETLGKLFQPFFTTKEPGEGSGLGLSLSHGIILEHDGTIRGESIPGEGAEFIVELP 1117 >gi|320352608|ref|YP_004193947.1| histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121110|gb|ADW16656.1| histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 376 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 66/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLS-----SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 +A L + L L + + H++ P+ +I +L + + Sbjct: 136 LANEQRSQLEDQLRHADRLAKVGQLTAGVAHELNEPLASILGFAQLATKKIDAPVHVARY 195 Query: 54 R--------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSW 104 + + F + +D L + + + F VD + + ++ Sbjct: 196 LDKIIQSTLHAREIIKKMMLFSSPVPNHKAKIDLNAVLAEGMAFIEPRFAKVDIQFKSTF 255 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 E + + ++I L A ++ G +T+ + ++ NG Sbjct: 256 DPELPPILADASQITQVLINLVINAIHAMDSMGTLTLRTARAGRLVQMVVQDNGIGMDQQ 315 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + V + + + + + + Sbjct: 316 TL-EQIFLPFFTTKDLDHGTGLGLSVVHGIVSAHDGTIDVKSEIGNGTTFTITFP 369 >gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii] gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 949 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 61/237 (25%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + L MD L + + + H++ +P+ +I + + E +++ + I+ Sbjct: 568 EAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSLNMKQEQYLTRIKA 627 Query: 56 SSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + Sbjct: 628 NGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHLNIELQSPD 687 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPE 162 ++IL NL A P GG+V + D+ + ++ NG Sbjct: 688 PELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDNGQGIPSDA 747 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + V L + + D + L Sbjct: 748 LPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQGTEFTFTLP 804 >gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW] gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW] Length = 878 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 54/219 (24%), Gaps = 23/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + + H++ +P+ A+ +LL + + E + + L + L + ++ Sbjct: 392 FVAVMSHEVRTPLNALLGFADLLLQTPLTAEQREWVTLQREAGEALLTVVSDVLDFSKLE 451 Query: 78 DSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKILLN 121 + + + V ++ ++LLN Sbjct: 452 AGRLEVDPHPFQLARLARSTSDLVRPTAEERGLALRVAVDPRLPEVVQGDAKRVRQVLLN 511 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VEST 175 L A RG + F + G PE+ ++ Sbjct: 512 LLNNAVKFTERGHVALAVFPVADGRVRFEVLDTGIGI-APEQQERLFQEFVQADRATARR 570 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E + L Sbjct: 571 YGGTGLGLAICRRLVDLMGGAIGVESAPGRGSLFWFELP 609 >gi|182413664|ref|YP_001818730.1| histidine kinase [Opitutus terrae PB90-1] gi|177840878|gb|ACB75130.1| histidine kinase [Opitutus terrae PB90-1] Length = 785 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 73/233 (31%), Gaps = 29/233 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAI 61 ++ + LL + HD + + I L+E ++ + Sbjct: 413 QKLEAIGLLAGGVAHDFNNILQVIRGHAGFLEESLAGAAAPLEDVRTILSASERGAQLTR 472 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKI 118 L F R +V++ + D+ +++ + VQ++ E ++ ++ Sbjct: 473 QLLAFSRKQPLLPEAVEANALVTDLVKMLRRVLGEHIEVQLALLPEPCTFVADKAQLEQV 532 Query: 119 LLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEK 163 LLNL + A ++P GG++ I ++ + ++ G E Sbjct: 533 LLNLCVNARDAMPSGGRLRIELKQTTLAAADTASLPELKPGPHLVLTVSDTGCGM-RREL 591 Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + ++ + V LL Sbjct: 592 VEHLFEPFFTTKAPGHGTGLGLSVVYGVVRQHGGAIRVYSEVGQGSVFRILLP 644 >gi|163758655|ref|ZP_02165742.1| periplasmic sensor signal transduction histidine kinase [Hoeflea phototrophica DFL-43] gi|162283945|gb|EDQ34229.1| periplasmic sensor signal transduction histidine kinase [Hoeflea phototrophica DFL-43] Length = 360 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 17/234 (7%), Positives = 64/234 (27%), Gaps = 19/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----------LLDEVGIEDE 48 + K + + L AL + + + H+I P+ A+ + + + Sbjct: 113 LRKTQKDLVQAGKLAALGQMSAALSHEINQPLAAVKSYADNAALYIERNRTAEAKANIAR 172 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104 + ++ + + F R ++ + + +++ + Sbjct: 173 ISEMTDRMAKISRHLRNFARRPGDKLNAIPVCEVIREAVALMDPQVRKSGSRISFASGQT 232 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162 + ++L+N+ A ++ + + + + ++ +G + Sbjct: 233 EHWVLGGRLRLQQVLVNIMTNAIDAMEGQSQKLMDISIDCADETVAIHVRDHGPGLKQDA 292 Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + +L D + + L + Sbjct: 293 LNQAFEAFFTTKDAGAGMGLGLSISYNIIEDFGGKLTASNHPDGGGIFTVELRR 346 >gi|154491848|ref|ZP_02031474.1| hypothetical protein PARMER_01472 [Parabacteroides merdae ATCC 43184] gi|154088089|gb|EDN87134.1| hypothetical protein PARMER_01472 [Parabacteroides merdae ATCC 43184] Length = 1375 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLE---------------LLDEVG 44 M + + ++ L S I H+ +P+ I + +E LL Sbjct: 833 MERKEKEAIEELNQAKLQFFSNISHEFRTPLTLIISQIELLLQSSSLSPSVYNKLLKVYK 892 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + LI + M+L V L + ++ Sbjct: 893 NTYHMRNLISELLDFRKLEQGHMKLKVYEQDIVPFLKEIYLSFYEYASSRSITYNFTAPQ 952 Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ + + NL A + + +++ +NE + NG + Sbjct: 953 ENVLCYFDPKQMQKVFYNLLSNAFKYTKPNAAIEMILENKENEVTIKVIDNGIGISKEDI 1012 Query: 164 FTQIVDGNVE-------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + S I + + + E + + L+K Sbjct: 1013 DKIFDRFYQAENGISNITKTPSTGIGLSLTKSIIELHHGTIQVESTPGYGSIFIVHLQK 1071 >gi|138895034|ref|YP_001125487.1| sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248392|ref|ZP_03147093.1| histidine kinase [Geobacillus sp. G11MC16] gi|134266547|gb|ABO66742.1| Sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196212117|gb|EDY06875.1| histidine kinase [Geobacillus sp. G11MC16] Length = 367 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 14/217 (6%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + L+ + S H+ +P+ AI ++LL + +I R+ Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 211 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L + D VD + + + + ++L+ Sbjct: 212 ASRKEIVESEKETFSLRQLLEEIMDFLYATIVDSDVDISLAIDESIHIFAYKDQLRQVLV 271 Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 N+ + + ++ K + + I + NG + I + + Sbjct: 272 NILLNSIEAVKEKEKPRRIKIAARSQEGRVIIEIANNGPAI-PADIVETIFEPFFTTKKL 330 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y + ++ + D + S L Sbjct: 331 GTGIGLYICKKVIEDHGGEISC-SSDANMTTFSIRLP 366 >gi|189426007|ref|YP_001953184.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422266|gb|ACD96664.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 810 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHN----SLELLDEVGIEDEV 49 + +N + + +L + + H+I +P+ AI +E LD +++ Sbjct: 417 LRQNQQDLVQARQAAEGANEAKSLFLANMSHEIRTPLNAIIGINSLLVERLDAGELKELA 476 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------ 103 + ++ I + ++ G ++ + D +I + + Sbjct: 477 KDSMAAANNLLDIISDVLDISKIEAGKLEIVTVPFDPRMLINQLERMFGAIVREKGLRFD 536 Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKI 153 G + +I +NL A +G DS + + Sbjct: 537 VSLGASLPGLLLSDPARIQQIGVNLLSNALKFTEQGTIRLRLTGSTLDDSTVQLDLIVSD 596 Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 +G E ++ + LA + E Sbjct: 597 SGKGI-LAENIERVFSPFVQEDLSTTRKFGGTGLGLAISRHLAEMLGGSIKVESRIGEGS 655 Query: 208 VLSALLE 214 + + Sbjct: 656 TFTCSIP 662 >gi|84500978|ref|ZP_00999213.1| C4-dicarboxylate transport sensor protein DctB, putative [Oceanicola batsensis HTCC2597] gi|84391045|gb|EAQ03463.1| C4-dicarboxylate transport sensor protein DctB, putative [Oceanicola batsensis HTCC2597] Length = 591 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 66/237 (27%), Gaps = 26/237 (10%) Query: 1 MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE---- 46 M K++ S L AL + + + H++ P+ A+ L LL E Sbjct: 346 MQKSLDVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAALLLRRNRPEEALS 405 Query: 47 --DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-- 102 + LI + R V+ + ++E + + Sbjct: 406 SFQRIDDLISRMGAITRQLKSYARKGGEQFSPVNVGDAVNSALSMMEPQLRQRQVRITRA 465 Query: 103 --SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLAR 159 + + ++L+NL A + I V +++ NG Sbjct: 466 VPDRRVQVMADRVRLEQVLINLMRNAIDATSSVENPAIDVILSVGETATITVRDNGTGI- 524 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + D + + ++ RL + V L Sbjct: 525 --ENLEDLFEPFYTTKRPGDGVGLGLAISSGIVNDFGGRLTARNAETGGAVFEIQLP 579 >gi|73748149|ref|YP_307388.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73659865|emb|CAI82472.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 426 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 2 AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 K + + M + HD+ +P+ +I +S +L + + + L S Sbjct: 185 EKKLRKRIQTEMKSRLEFTRIVVHDLKTPLTSIISSSGVLSNIAADGKYKALASNIYEST 244 Query: 61 IIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + +++ V V Sbjct: 245 MNLNIRLDELLDMAQCEVRDPKLNKSRFNIKEMLEHIISIQQEICNTNHIVFNIVIAPEV 304 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I +IL NL A G ++I++ +N +FS+ +G E Sbjct: 305 TFIIADEDRLKQILDNLIDNAIKYSADSGIISINISHDQNNVLFSISDSGIGIEPGEIKN 364 Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + R+ E + Sbjct: 365 IFKPYYRVENRQRKLQGLGLGLSIVRTYVKLHGGRIWVESECGKGTTFLFTIP 417 >gi|94986247|ref|YP_605611.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94556528|gb|ABF46442.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 770 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 59/230 (25%), Gaps = 23/230 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 N+ + + ++ A + S HD+ P+ + + ELL D+ + ++ + Sbjct: 533 NLQRSNAELEQFAYVAS---HDLQEPLRTVGSYAELLARRYQGQLDPRADQYLAFMQDAV 589 Query: 58 MSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKID 110 ++ + V L Q V A + Sbjct: 590 ERMRSLIQDLLGFARVGRMDTGLQPVQLEDVLRQAAQNVQGTLEATGATLSWDTPQTVWG 649 Query: 111 LSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ NL +V ++ + ++ NG PE ++ Sbjct: 650 HPGLLVQLFTNLIGNGLKFARAGVPPEVHVTAHQEGQQVRIKVQDNGIGI-APEYHERVF 708 Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ + + L Sbjct: 709 AIFQRLNRREAYPGNGIGLAICRKIVEQHGGSISLTSVPGEGTTFHLTLP 758 >gi|110633971|ref|YP_674179.1| signal transduction histidine kinase, nitrogen specific, NtrB [Mesorhizobium sp. BNC1] gi|110284955|gb|ABG63014.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chelativorans sp. BNC1] Length = 377 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 69/242 (28%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51 MA+ I ++ + V L + + H+I +P+ I + +LL+ + + + + Sbjct: 117 MAEKIDRQMTHRGAARSVTGLAAMLAHEIKNPLSGIRGAAQLLEHVVSDEDRALARLITE 176 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 +F V+ + L ++ + ++ A + + + Sbjct: 177 ETDRIVALVDRMEEFSDERPVDREPVNIHVVLDHVKAIAKNGFARHINIIEEYDPSLPPI 236 Query: 112 SRERAKILLNLFMVAHASLP-------------------RGGKVTISVQDSKNENIFSLK 152 R +++ + + V + + F + Sbjct: 237 FANRGQLVQVFLNLIKNASEAIGNASTGEIKLSTAFRPGIRFSVPGTRERVSLPMEFCVH 296 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG + I D + + + + V + + + + L Sbjct: 297 DNGPGV-PEDIQAIIFDPFITTKPNGSGLGLALVAKIVGAHGGVIECDSSS-RGTTFRVL 354 Query: 213 LE 214 + Sbjct: 355 MP 356 >gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 675 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/250 (9%), Positives = 52/250 (20%), Gaps = 38/250 (15%) Query: 2 AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELL----DEVGIEDEV 49 + L A S + H+I +PI AI +LL Sbjct: 250 QRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAILGFSDLLIHDQRLQNEFPNW 309 Query: 50 MQLIRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 + + + L + + ++ + + + + Sbjct: 310 FESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCSPLEIVRDVCQLMSLKASEKD 369 Query: 96 VDKRVQV--SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---SKNENIFS 150 + V + ++L+NL A PRG Sbjct: 370 LTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPRGSVQITVDIHSSGHATMLAVE 429 Query: 151 LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + G + ++ + + ++ Sbjct: 430 VTDTGIGMTSAQI-DRLFQPFTQADASTTRRFGGTGLGLVISKRIVEALGGQVSVVSQSG 488 Query: 205 HNVVLSALLE 214 LL Sbjct: 489 EGSTFRVLLP 498 >gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 713 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 62/236 (26%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55 +A+ + + + + H++ +P+ I +LL + ++ I Sbjct: 470 LAEQARREAEAANRAKDEFLAVLSHELRTPLNPIIGFAQLLRRKSGLSAADYRALETIER 529 Query: 56 SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + MR+ + + + + + + ++ Sbjct: 530 NGRLQAQLIDDVLDVSRIISGKMRVELRAVDLLPVVAAAIEAVRSPAELKGICLSGRLDD 589 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +++ NL A P GG+V I + + + +G Sbjct: 590 GATAVADPTRMQQVVWNLLTNAIKFTPEGGRVVIDLCRGDRTLLIRVSDSGIGISPDFLP 649 Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + DG + V + + + + L Sbjct: 650 YVFERFRQADGTSTRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTTFCVELP 705 >gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo] gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo] Length = 688 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 25/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + + + H+I +P+ AI +++L + ++R+ SA Sbjct: 316 ARSEAEKANQAK--SQFLATMSHEIRTPLNAILGLIDVLLSKCTDKNNTDVLRMMESSAE 373 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + V S E + + + Sbjct: 374 LLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQHYQLVANEKGLKLSLDLADDIP 433 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++IL NL A G ++ + + G Sbjct: 434 HQIHTDATRLSQILFNLVGNAVKFTEAGEIRVKVIRQPGQTLVIRVTDTGLGIDES-VLE 492 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + LA + + + L Sbjct: 493 KVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDITVKSQRHQGSEFTLTLP 547 >gi|317478861|ref|ZP_07938012.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316905037|gb|EFV26840.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 758 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDE 48 + + + S +L + L + H+I +P+ AI ++L E Sbjct: 518 LKDHEQELIESRELAEQAELKQSFLN-NMSHEIRTPLNAIVGFSDMLANEPEFSNEERQE 576 Query: 49 VMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + +I ++ + + + F L + ++ Sbjct: 577 FVDIINTNTKLLLKLVGDVLELSRIESGNLSFTFQRESVHRLLDDVYQTHSLLIRPPLQF 636 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156 + + ++L N A+ G S E ++ G Sbjct: 637 LKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKGGSIRLGYCCPSGMSEVHLYVEDTGI 696 Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ S + +L+ + R+ + + +L Sbjct: 697 GIPHSEQKMIFERFYKRSEFSQGVGLGLSICVLIVEKMGGRIELRSEEGRGSRFTVVLP 755 >gi|296501092|ref|YP_003662792.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|296322144|gb|ADH05072.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 337 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + + S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 95 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ E + G + Sbjct: 215 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E + K Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 331 >gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1235 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K L + L + + + H+I +P+ + LL + ++ + ++ SA Sbjct: 561 LVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTSA 620 Query: 61 IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKR---------VQVSW 104 L + ++ D L + + I D +A V + Sbjct: 621 NHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNV 680 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLA 158 ++LLNL P R + ++ + ++ G Sbjct: 681 PRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRVSRPPNYDINAPLILRYEVQDTGIGI 740 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 PE ++ + + L + E + Sbjct: 741 -PPESHGRLFEAFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFT 799 Query: 213 LE 214 L Sbjct: 800 LP 801 >gi|284053861|ref|ZP_06384071.1| integral membrane sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291570304|dbj|BAI92576.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 368 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 L S + H++ +PI + LE + E ++ Q + + + ++ Sbjct: 147 LISDLTHELRTPITVVRGYLEEMAEGRISPSPDIYQQLTKETKRLERLINNLQELSKVES 206 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---DLSRERAKILLNLF 123 + +++ + + +++ ++ E +IL+NL Sbjct: 207 GYLPINPQPLALRPLLESLVQRFSDQLLEEGPMLELDFSEELPLALADVDRTEQILVNLL 266 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVES--TIDS 178 A G + G P F + + Sbjct: 267 GNAIRYTKHGLIKIEVYTH-GGYLFVDVSDTGIGISEADLPHVFERFWRADRSRSRNYGG 325 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L + + L Sbjct: 326 TGIGLAITRRLVELQGGEIFVSSQLGKGSTFTFSLP 361 >gi|285017626|ref|YP_003375337.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283472844|emb|CBA15349.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 504 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 70/223 (31%), Gaps = 16/223 (7%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVM-----QLIRLSSMS 59 ++ +ALL + + HD+ + + + EL+ + + + R Sbjct: 144 MRAQRLESLALLAAGLSHDLRNILQPLLIVPELMVGRSDDPQLRHLADVIAECGRRGHEM 203 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDLSRERA 116 A L F+R + + V ++ +++ + +QV + E Sbjct: 204 AESMLSFVRGSRTPSQRVCIAELFQAVQMLLKSSLPEGVALQVEVADASLSIEANYTELQ 263 Query: 117 KILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + LLNL + A ++P + + +++ ++ +G E ++ Sbjct: 264 QCLLNLGLNAIQAMPNGGRLTFSAIQAIGTNGRDQVRILVRDSGMGM-DAETQARLFSPF 322 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + +L Sbjct: 323 FTTKPDGTGLGLISCKRIVEGYGGSIGVDSTPGEGTCFELMLP 365 >gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286] gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286] Length = 984 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + E I + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|229074748|ref|ZP_04207768.1| hypothetical protein bcere0024_13040 [Bacillus cereus Rock4-18] gi|228708388|gb|EEL60541.1| hypothetical protein bcere0024_13040 [Bacillus cereus Rock4-18] Length = 423 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKHLLIPELDRA 245 Query: 61 IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L + Q + + + + Sbjct: 246 NSIITQFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQ-AGTTFTISIP 409 >gi|297564622|ref|YP_003683594.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849071|gb|ADH62086.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 365 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 61/237 (25%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRL 55 +A++ +++ L + H++ +P+ + E L + ++ I Sbjct: 122 LAQDFNRMAEALEKVEQSRVELIGSVAHELRTPLAGLQGYAEALADGVLPPEQAAHRIAH 181 Query: 56 SSMSAIIRLKFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ + + + E+ F +++ Sbjct: 182 EVRAMRRLVEDLSLVSRVEAGAVEIRPQPLDPAEALRQAAERFELVFAEQGVALRLDVPP 241 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ L A P GG+V + + FS++ G PE Sbjct: 242 RLPPVWADLERLQQVLSNLLANALRHTPSGGEVVLQAGLVPSGVCFSVRDTGPGI-PPEH 300 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + L Sbjct: 301 QARVFERFYRVDSARSRQDGGSGVGLTIAKGLVEAMGGTMGLRSEAGRGSTFWFTLP 357 >gi|307152177|ref|YP_003887561.1| histidine kinase [Cyanothece sp. PCC 7822] gi|306982405|gb|ADN14286.1| histidine kinase [Cyanothece sp. PCC 7822] Length = 423 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 66/228 (28%), Gaps = 26/228 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 ++ + H++ +P+ AI S+E++ + + + I ++ Sbjct: 194 QNLK---QFTADASHELRNPLTAISTSIEVMLNHPERIHPKDVKKLAAIAKATEHMTRLT 250 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------------IDL 111 + + G + + + + + ++ ++ + Sbjct: 251 QDLLFLARTDGEIALVENPWQSISLNQILENLIDLLEPLAEDKEVKLNYEALTTVSVMGD 310 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 + +++ NL A P G+VT+S+ S++ G E F + Sbjct: 311 PSQLSRLFSNLLQNAIQYTPPKGQVTLSLTKQNRLCYVSVQDTGIGIAPEELPFIFNRFW 370 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V +A + ++ L Sbjct: 371 RADKARTRREGGSGLGLSIVAAIAQRHGGKITVSSEVGVGSCFKVQLP 418 >gi|197122464|ref|YP_002134415.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172313|gb|ACG73286.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 618 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH-NSLELLDEVGIEDEV---MQLIRLS 56 M + L + HD+ +P+ AI + LL + D + IR + Sbjct: 379 MRDEQRLR-QAQAFEQQLIGIVSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSA 437 Query: 57 SMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106 + A ++ + D + + + V+ + Sbjct: 438 AERAARLIRDLLDLTRARLGGGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEAAGDT 497 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 A+++ NL A RG V + + E S+ G T Sbjct: 498 HGQWDPDRIAQVIGNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGTPIPAETVRTI 557 Query: 167 IVDGNVES-TIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 G + + + V +A + R+ ++ + L + Sbjct: 558 FEAGGRAAPDPTGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 609 >gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587] gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587] Length = 984 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|153007232|ref|YP_001381557.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030805|gb|ABS28573.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 484 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 12/222 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + L + I H++ +P+GA+ LL E + Sbjct: 244 MRRALRARDEERE---TLLAGIAHEVRNPLGALDLFAGLLAEELQGRAQAPHVARIQSEL 300 Query: 61 IIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLS 112 K + Y VD I L ++ + + V GE Sbjct: 301 AALSKVVEEFLDYARARPPLREPVDLRIVLAEVADLAAPLAAQRQVSIAVEGEGEAKADR 360 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + LLNL A + P +V ++ + + E ++ G E + Sbjct: 361 EQLRRALLNLVRNAVEAAPAASEVEVAARVADGEAHIEVRDRGPGL-AAEARASLFRPFF 419 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + L E D + L Sbjct: 420 TTKEKGTGLGLALAKKVADAHGGTLSLEQRDGGGTIARLALP 461 >gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 725 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 70/244 (28%), Gaps = 33/244 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 + S L + H++ +P+ +I E+L D + ++ + + Sbjct: 470 SDRTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQDLDSESQREFLLTVSNEA 529 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + ++ G V + + + V ++ + Sbjct: 530 DRLHKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLVQHKLLIDMRTPLPP 589 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVT-----------ISVQDSKNENIFSLKINGN 156 + +R +I++NL A P G ++ + + + +++ G Sbjct: 590 VFADRDKVKQIIVNLLSNAIKYSPEGTEIQLIVRQAEASDLPAGHPAGQWMLITVQDQGI 649 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 PE ++ + + Y LL + R+ + S Sbjct: 650 GI-EPEDQARLFERFHRVDNSNTRQKSGVGLGLYITRLLVELHGGRIWVQSTVGVGSSFS 708 Query: 211 ALLE 214 L Sbjct: 709 FTLP 712 >gi|16262960|ref|NP_435753.1| sensor histidine kinase of two-component system [Sinorhizobium meliloti 1021] gi|14523609|gb|AAK65165.1| Sensory histidine kinase [Sinorhizobium meliloti 1021] Length = 633 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 24/223 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLI------------RLSSM 58 L + I H++ P+GAI + E +L+ + +++Q I + Sbjct: 407 AGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGDIIDR 466 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAK 117 + K + + D + I V S G + Sbjct: 467 MRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRVHVQQ 526 Query: 118 ILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++LNL + A ++ R ++ + + S+ G+ + I D Sbjct: 527 VILNLAINAMDAMLQAPTAERNLMFQTAMVERNEKVEVSISDTGSGIPSDKLSN-IFDAF 585 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ +L + V +L Sbjct: 586 YTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLP 628 >gi|298387970|ref|ZP_06997518.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259236|gb|EFI02112.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 482 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + + ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGARQEGDMIDLYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481 >gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 988 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 61/245 (24%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K F L + A + + H+I +P+ I L+LL+ + E + I Sbjct: 580 RKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLESTDTDHEQSEYI 639 Query: 54 RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 ++ S + + + I ++ I + Sbjct: 640 DIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVINTFITELSSKEIELS 699 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKIN 154 ++ + S +I+ N+F + G Q + Sbjct: 700 TSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFTSSGRIFINIDSLIQRQTIYLFIEVSDT 759 Query: 155 GNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + V G++ + V L + E D Sbjct: 760 GIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMGGTITVESNIDKGTTT 819 Query: 210 SALLE 214 + Sbjct: 820 CIAIP 824 >gi|218128661|ref|ZP_03457465.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] gi|217989116|gb|EEC55431.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] Length = 1348 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K +S M + + I H++ +P+ I L+ L E + + + Sbjct: 819 LDKEKQEEISQMKIRFYI--DISHELRTPLTLIVAPLQELIERIKGHWEHEKLSYIQRNT 876 Query: 61 IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L + Y + + + + + + ++ Sbjct: 877 NRLLHLVNQLMDYRRAELGIFELRPVYANAYKKVLNCFLNYENLSKRKDIDYNLYTELQD 936 Query: 115 RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + A +G +T+ + N + + G EK Sbjct: 937 EELLFDETYLDLIVNNLLSNAFKYTEKGECITVRLYKEDNNLVLQVIDTGVGI-PAEKQK 995 Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + S + I V L + + E S + Sbjct: 996 KIFERFYQAESGHEGSGIGLSLVQRLVELHHGHITLESKVGEGSTFSIYIP 1046 >gi|126729800|ref|ZP_01745613.1| sensory box sensor histidine kianse/response regulator [Sagittula stellata E-37] gi|126709919|gb|EBA08972.1| sensory box sensor histidine kianse/response regulator [Sagittula stellata E-37] Length = 765 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 70/236 (29%), Gaps = 31/236 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62 + S + A+ L + HD + + AI +LL D+ + + I ++ A Sbjct: 387 VQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAA 446 Query: 63 RLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + R +D L D+ ++ + R+ + + +R ++ Sbjct: 447 LVGQLLAFSRKQTMQPEVLDLRDTLSDLAHLLNRLVGEKVRLTLRHDPALPPVRGDRRQL 506 Query: 119 LLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARF 160 + A ++P K +V + G Sbjct: 507 EQVMMNLVVNARDAMPEGGEILVETERRLLREPLKRDRAVVAPGTYVSVRVIDEGVGI-P 565 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K ++ + + + + V + + + + + + +L Sbjct: 566 ADKLQKVFEPFFTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSVVGQGTCFTLMLP 621 >gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 524 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 58/234 (24%), Gaps = 28/234 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 AK+ + + + + H++ +P+ AI ELL E + + + ++ Sbjct: 133 AKDRAEAGARSK--SEFLANMSHELRTPLTAIIGFAELLAREGSLAPQERHWLARIEDAS 190 Query: 61 IIRLKFMRLAFGYTGSVD--------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ + + + + V + V Sbjct: 191 KALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAERKGVGLAIFVDDGL 250 Query: 107 EK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160 + +ILLNL A GG +D + F++ G Sbjct: 251 CDGLRGDTGRLRQILLNLICNAVKFTNHGGVTIRVSEDVGAGGPPQVRFAISDTGIGIPD 310 Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G+V + L + E Sbjct: 311 AALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVESRVGSGSTF 364 >gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 562 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 55/239 (23%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSM 58 + +++ + + + H+I +P+ AI EL + + E +LIR S Sbjct: 175 LESQKALAVAATRAKSEFLANMSHEIRTPLNAILGMAELAERRCPQHVKEHFKLIRQSGR 234 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 + + + L + + + V + Sbjct: 235 ALLDIINDILDLSRIEAGRFAPQRKPFQPREALDSVLGPMSMIAEEKGLALNLAVSPTVP 294 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-------VQDSKNENIFSLKINGNLA 158 + ++L NL A RG FS++ G Sbjct: 295 VWLVGDEGRLRQVLTNLLGNALKFTERGRIELHVAREPSDLQHPEAVRLHFSVRDTGIGI 354 Query: 159 RFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + L R+ + Sbjct: 355 PAERQQAIFQSFSQAEASAHAKYGGTGLGLTISKELVERMGGRIWVDSEPGLGSTFHFT 413 >gi|323484204|ref|ZP_08089573.1| histidine kinase [Clostridium symbiosum WAL-14163] gi|323402446|gb|EGA94775.1| histidine kinase [Clostridium symbiosum WAL-14163] Length = 466 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 72/239 (30%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 M++N+ L ++ + S H++ +PI +I +ELL+ + ++ Sbjct: 224 MSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGMALNEETTHDFLK 283 Query: 52 LIRLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 I+ +M + + + + + + + + Sbjct: 284 RIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHK 343 Query: 103 SWTGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + I R+ ++ +NL A G++ + + + + +++ +G Sbjct: 344 QFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLAVRDSGVGI-PQ 402 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + V + + + E + L Sbjct: 403 ESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLP 461 >gi|312890080|ref|ZP_07749624.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297612|gb|EFQ74737.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 352 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 62/218 (28%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMR------- 68 S + H+ +P+ AI +E L + + + ++ + +K + Sbjct: 121 SNVSHEFKTPLFAIQGYIEALQDDMDDPVMVKQFLEKASKNVDRLSYLVKDLDEISKLES 180 Query: 69 ----LAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAKILLNL 122 + + D + + + ++ + + + + ++L+NL Sbjct: 181 GEIPINYVKFKINDLIKEVMESLEMKAVQHKIKLSYKDKYDEPILVTADREKIRQVLVNL 240 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STID 177 + G +I + D ++ + + +G I Sbjct: 241 IDNSFKYGKENGNTSIRLYDLHDQVLVEVTDDGIGIEEKYLPRLFERFFRTDSSRSRQIG 300 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ + + L+K Sbjct: 301 GSGLGLAIVKHIIESHQQTINVRSTEGLGSTFGFTLQK 338 >gi|294664051|ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and response regulator hybrid transcription regulator protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606178|gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and response regulator hybrid transcription regulator protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1092 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 57/238 (23%), Gaps = 27/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + ++ + + H+I +P+ LELL + E + + + S Sbjct: 502 AKQTADEANRAK--SIFLAIVSHEIRTPLHGAMGHLELLARSPLGFEQAEWVDMIRRSFD 559 Query: 62 IRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 L + V ++++ +A Sbjct: 560 ALLSLVNDLLDSTKLEANALKINPMPMSPNEVAERCARSFGASILQNDVAFYCMTDPDLD 619 Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161 G + A+IL NL A + Q F + G Sbjct: 620 GVVEGDDQRLAQILQNLLGNAVKFTERGSIMISSRCLKQQGDTIWARFEVADTGIGIPAS 679 Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + L+ R+ V L Sbjct: 680 MQSAIFKPLAQADDSISRRFGGTGLGLFLCRNLSRLMGGRISVSSEPGKGSVFRVDLP 737 >gi|261250586|ref|ZP_05943161.1| nitrogen regulation protein NR(II) [Vibrio orientalis CIP 102891] gi|260939155|gb|EEX95142.1| nitrogen regulation protein NR(II) [Vibrio orientalis CIP 102891] Length = 348 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+ + + + ++ A Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERTLPDPSLTEYTQIIIEQA 175 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + + L + Q+++ ++ + ++ + Sbjct: 176 DRLRALVDRLLGPQKPGQKKQENLHLILEKVRQLVDLEANQSIDIERDYDPSLPEILMDA 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 A+I L + + + I Q K + NG Sbjct: 236 AQIEQALLNIVSNAGQILRAQDNGQITIRTRTVHQANIHGQRCKLAARIEIIDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + L +++ ++ E + L Sbjct: 295 ADLQDTLFYPMVSGREGGTGLGLSIAQNLIDQHQGKIDVESWPGR-TTFTIYLP 347 >gi|262042632|ref|ZP_06015788.1| sensor protein EvgS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040066|gb|EEW41181.1| sensor protein EvgS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1080 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55 + + + + + + + H++ +P+ AI LELL + + + Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNVSQRKEAIELAGST 642 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103 + + + + +G D+ Q++ + + Sbjct: 643 AQTLLGLIGNILDIEKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL NL A + + +++ E + +G Sbjct: 703 EGTMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLMLANETQGELALMVSDSGCGIS 762 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + L + RL + L Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820 >gi|229068099|ref|ZP_04201406.1| hypothetical protein bcere0025_3150 [Bacillus cereus F65185] gi|229077703|ref|ZP_04210333.1| hypothetical protein bcere0023_4060 [Bacillus cereus Rock4-2] gi|228705644|gb|EEL58000.1| hypothetical protein bcere0023_4060 [Bacillus cereus Rock4-2] gi|228714913|gb|EEL66781.1| hypothetical protein bcere0025_3150 [Bacillus cereus F65185] Length = 369 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D+L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHICAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367 >gi|291287871|ref|YP_003504687.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885031|gb|ADD68731.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 360 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 11/214 (5%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 + + L + I H+I +P+ AI + + L+ D+V+ ++ ++ Sbjct: 147 RLKAIGQLSAGIAHEIRNPLAAIKSGISLIKSGKGNDQVIDILSTEINHLDDFIRRFLQY 206 Query: 71 FGYTGSVDSLIGLGD---------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + L + ++ + + L+N Sbjct: 207 ARFGSEEKVTFELEQLVSELTELLNLASSRQKVIINYNIPDITGVTLTGDKNAIKQALVN 266 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181 + + + + IS++ +E IF++ NG E +I + + + Sbjct: 267 IAINGIEACEGEAVLEISLEIKDSEVIFNITDNGKGL-DEELTGKIFEPFFTTKDMGTGL 325 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +A ++ L + + S LL + Sbjct: 326 GLALASKIAQQHGGSLNVKNQE-RGCTFSMLLSR 358 >gi|152971997|ref|YP_001337143.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956846|gb|ABR78876.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1080 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55 + + + + + + + H++ +P+ AI LELL + + + Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNVGQRKEAIELAGST 642 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103 + + + + +G D+ Q++ + + Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR 159 + +IL NL A G +++ E + +G Sbjct: 703 EGTMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLTLANETQGELALMVSDSGCGIS 762 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + L + RL + L Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820 >gi|56696905|ref|YP_167267.1| sensory box sensor histidine kianse/response regulator [Ruegeria pomeroyi DSS-3] gi|56678642|gb|AAV95308.1| sensory box sensor histidine kianse/response regulator [Ruegeria pomeroyi DSS-3] Length = 768 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 31/236 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62 + S + A+ L + HD + + AI +LL D+ + + I ++ A Sbjct: 390 VQSQKMQAVGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAA 449 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRER 115 + + ++ L D + + +V+ T R+ Sbjct: 450 LVSQLLAFSRKQTLRPEVLDLRDTLADLIHLLNRLVGEKVTLTLSHDPVLKSVRADKRQL 509 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKINGNLARF 160 ++L+NL + A ++P+GG++ I + ++ G Sbjct: 510 EQVLMNLVVNARDAMPQGGEIRIETEVMTLDEPLERDRATLPIGEYVTVKVRDEGTGI-E 568 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+K +I + + + + V + + + + + + L Sbjct: 569 PDKLQKIFEPFYTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSVLGKGSEFTLYLP 624 >gi|254229908|ref|ZP_04923311.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|151937544|gb|EDN56399.1| conserved hypothetical protein [Vibrio sp. Ex25] Length = 341 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L L + + I H++ +P+ AI + E L + + V + Sbjct: 97 LRLTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYERVEDNLTR 156 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103 S + + + + + + Sbjct: 157 ISALTDRMANISQQLRSFAKKTSGNELAQSRLFPVIASVKELMKPALKSARVTLETQVPE 216 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + ++L+NL A +L + + + NG Sbjct: 217 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVQLSIEQDEHAGLVWIHVDDNGPGLG 276 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + RL + + S L Sbjct: 277 DFSLSD-LCEPFLTTKQNGLGLGLSISQQILASMNGRLCAQNREQGGARFSLCLP 330 >gi|329925248|ref|ZP_08280191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328940081|gb|EGG36414.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 621 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 10/223 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53 M N M++++ L + + H++ +P+ L+LL + ++ +++L Sbjct: 396 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLTGKAQSTEREYLDLALVELD 455 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDL 111 R S + T S + R+ V Sbjct: 456 RASGIITDFLTFAKPEFGKDTVLRISEEFKHIEGILGPLAHLQGGRITVDIPEDITIRGN 515 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 S + + +N+ + +L G V I + + + NG PE ++ + Sbjct: 516 SSKFKQAFINIVKNSIEALGDDGLVHIRCYRQQGQVFIHVVDNGEGM-GPEVLARLGEPY 574 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 575 FSNKTKGTGLGLMVTFRIIEAMDGDIYFTSKIGVGTDAVITLP 617 >gi|320354404|ref|YP_004195743.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122906|gb|ADW18452.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1251 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 66/241 (27%), Gaps = 32/241 (13%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + S L A +L + HD + +GAI EL +++ +Q I ++ Sbjct: 867 QEQLMQSQKLEAVGILAGGVAHDFNNMLGAIIGYTELTLGTMEQTDPLRRNLQRILDAAE 926 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIE--QVIEDFIAVDKRVQVSW-----TGEKIDL 111 + + + ++ L + + + + + ++W Sbjct: 927 RSAALTRQLLAFARKQTVAPVILDLNESVAGMLKMLRRLIGENITLAWLPGPLPCTVRID 986 Query: 112 SRERAKILLNLFMVAHAS----------------LPRGGKVTISVQDSKNENIFSLKING 155 + ++L NL + A + L + + ++ +G Sbjct: 987 PTQLDQLLANLCVNARDAIGENIGTITIKTATVSLDETFCRAQASAAPGEYVLLAVSDDG 1046 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I + + + V + +N+ + + L Sbjct: 1047 CGM-DKATMDHIFEPFFTTKELGQGTGLGLATVYGIVTQNEGFITAASEPGTGTTFTVHL 1105 Query: 214 E 214 Sbjct: 1106 P 1106 >gi|317497414|ref|ZP_07955736.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895334|gb|EFV17494.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 451 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + + + H++ +P+ I + E L E + +E + + + Sbjct: 220 MFERLEESFEKEQ---QFTADVSHELRTPVTVIISQCEYLIEDPVLEEEEKEEIMIILRQ 276 Query: 61 IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 R+ + + + + + + + V Sbjct: 277 ARRMSKLINEMLMIARGEMSESYDMEEVDLILLTEVIVEELREQAEKKKIQISVFSDRDV 336 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 + + ++++NL A + G + I ++ + I +K +G + Sbjct: 337 KMMGNHTLLLRMMMNLVQNAISYGKEHGHIDILWKEQGDMIIGEVKDDGIGIDQEDIPKI 396 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + V + + ++ E + K Sbjct: 397 WDRFYRVDKSRSRENGGTGLGLSMVHFIVAVHGGQIHVESKNGEGTSFIFQFPK 450 >gi|262402032|ref|ZP_06078597.1| nitrogen regulation protein NR(II) [Vibrio sp. RC586] gi|262352004|gb|EEZ01135.1| nitrogen regulation protein NR(II) [Vibrio sp. RC586] Length = 352 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + LL + H+I +P+G + + +LL+ + + + + ++ A Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALTEYTQIIIEQA 175 Query: 61 IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + + L + Q++E + + + ++ + Sbjct: 176 DRLRSLVDRLLGPQRPGEKKWENLHLILEKVRQLVELETGENLTFERDYDPSLPNILMDT 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I L + + + I Q K + NG Sbjct: 236 DQIEQALLNIVSNAAQILANQPHGVITLRTRTVHQANIHGQRYKLAASIEIIDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + V + L +++ ++ + + L Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TTFTIYLP 347 >gi|238896576|ref|YP_002921319.1| putative sensor protein EvgS1 [Klebsiella pneumoniae NTUH-K2044] gi|238548901|dbj|BAH65252.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1080 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55 + + + + + + + H++ +P+ AI LELL + + + Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNVGQRKEAIELAGST 642 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103 + + + + +G D+ Q++ + + Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL NL A + +++ E + +G Sbjct: 703 EGTMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLTPANETQGELALMVSDSGCGIS 762 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + L + RL + L Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820 >gi|229172039|ref|ZP_04299604.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3] gi|228611382|gb|EEK68639.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3] Length = 466 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIHISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + ++K G + + Sbjct: 364 NAIRYTNQNGDIVITLRQIDDYCELNIKDTGIGIETEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E H +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGHGTTVSIKLK 458 >gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 802 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 51/234 (21%), Gaps = 24/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + L + + H+I +P+ + + + + + + + S Sbjct: 414 AKEEAEAANRAKSAFL--ATMSHEIRTPLNGVLGMAQAMAMDELSPAQRERLDVIRQSGE 471 Query: 62 IRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + + + + + + + + V+ Sbjct: 472 SLLAILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAEAKGLGFEIAVARNAR 531 Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +IL NL RG + F ++ G + Sbjct: 532 GLYRGDPIRVRQILWNLVSNGLKFTDRGAVEVRVRRAQGL-LAFEVRDTGIGIAPEQLAN 590 Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA + E + L Sbjct: 591 LFRKFEQADASTTRRFGGTGLGLAICRELAGLMGGEIAAESARGQGARFTVSLP 644 >gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1560 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 68/242 (28%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51 + I L+ L + + H+ +P+ +I ELL+ + + + Sbjct: 1313 QQEIEKALAKEKELHKLKSQFIDIVSHEFRTPLTSILGYAELLERHSDKLTTEKKIKHLH 1372 Query: 52 LIRLSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 I+++ ++ + ++ D+ + I+ I + Sbjct: 1373 NIQMAGQRLSDLIQDVLCISRAESGKLLYNPTLINVADFCQDLIEEIQIGIGQGYEILFK 1432 Query: 104 WTGEKIDLSRER--------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + S + IL NL P G +V +S+Q + IF ++ G Sbjct: 1433 QPNLRPHSSTDLIYLDEKLLRHILTNLLSNGIKYSPIGSRVELSLQYENQQVIFEIRDQG 1492 Query: 156 NLARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + I + V + + + Sbjct: 1493 IGIPLEDHPKLFDSFYRASNVGNIPGTGLGLNIVQKYVNLHGGTIDFTSTVKVGTTFKVS 1552 Query: 213 LE 214 L Sbjct: 1553 LP 1554 >gi|84385456|ref|ZP_00988487.1| signal transduction histidine kinase [Vibrio splendidus 12B01] gi|84379436|gb|EAP96288.1| signal transduction histidine kinase [Vibrio splendidus 12B01] Length = 574 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 24/234 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + + + H++ +P+ AI ++ L + DE ++ S S+ Sbjct: 199 ARKDAERANKAK--SEFLAMMSHELRTPLNAIIGLIDTLKSTPLNDEQQSILLNMSTSSE 256 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + + +A+ + Sbjct: 257 LLLAIISDVLDFSKIESGCFSLAPQWSNVRDTVTFVLSEQKKTADDKGLALTVTSDIPEG 316 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+IL NL A R G V +S++ ++ +++ G + + Sbjct: 317 ELHYIDPSRLAQILFNLIGNAIKFTER-GHVHVSIKYLQSSFYITVEDTGIGISSQQLSS 375 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + R+ E L Sbjct: 376 LFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVQLP 429 >gi|91976349|ref|YP_569008.1| sensor histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682805|gb|ABE39107.1| sensor histidine kinase [Rhodopseudomonas palustris BisB5] Length = 936 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 69/245 (28%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + L A+ L + HD + + I + E+L E + + I Sbjct: 525 LKEAERRLHQAQKLEAIGQLTGGVAHDFNNMLTVISGTAEILIEELTDRPNLSNIAKMIE 584 Query: 59 S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R +VD + + EQ++ I +V V + Sbjct: 585 QAAERGADLTRQLLAFARKQPLQPRNVDVNAIVLETEQLLRATIGEHIQVDVRLEQDVDA 644 Query: 111 LSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLK 152 + +++ L A ++P GK + ++ Sbjct: 645 ARIDPSQLSSALLNLAVNARDAMPISGKLLLETGGVVLDNDYAQQNPDVRPGRYVMIAVS 704 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G E ++ + + + + V ++ + ++ + Sbjct: 705 DTGTGI-PAEMRDKVFEPFFTTKSLGNGTGLGLSIVYGFVKQSGGHVKIYSEENQGTTIK 763 Query: 211 ALLEK 215 L + Sbjct: 764 LYLPR 768 >gi|326797201|ref|YP_004315021.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547965|gb|ADZ93185.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 846 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 67/231 (29%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 ++ M+++ L + HD + + AI +L+LL + + Sbjct: 465 ESQLRQAQKMEMLGQLTGGVAHDFNNLLAAIMGNLQLLSDSEPLSSDQRRYTERALAVSE 524 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 SS L F R + + + ++E + +V+ S + + Sbjct: 525 KSSNLVQRLLAFSRRQQLFPECTHIDDLIEGMLDLVEYSVGSHIQVKPSLNCPDVHCLID 584 Query: 115 RAKILLNLFM---VAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +++ L + A++P K ++ G+ E Sbjct: 585 PSQLENALLNLSLNSAAAMPSGGTLTFSTKACTLPDSDVPAIRIKVEDTGDGI-PKEVLA 643 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + ++ ++ + + L Sbjct: 644 RIFEPFFTTKPVGKGSGLGLSMIYGFVKQSGGDIIVTSEEGKWTKVCIFLP 694 >gi|260846023|ref|YP_003223801.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O103:H2 str. 12009] gi|257761170|dbj|BAI32667.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O103:H2 str. 12009] Length = 778 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLCFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] Length = 591 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 69/237 (29%), Gaps = 27/237 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58 M + + + + H++ +P+ + E + + ++ + + +++ Sbjct: 355 MTEERRL----EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYD 410 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG 106 ++ + G VD + I + + ++ V + Sbjct: 411 ESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQS 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + ++L NL A GG VT+ + + F ++ +G + Sbjct: 471 PIEQYTFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDI 530 Query: 164 ---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + T + + + ++ + S L Sbjct: 531 PFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSVYLP 587 >gi|224368211|ref|YP_002602374.1| two-component hybrid sensor and response regulator histidine kinase (Ntr family) [Desulfobacterium autotrophicum HRM2] gi|223690927|gb|ACN14210.1| two-component hybrid sensor and response regulator histidine kinase (Ntr family) [Desulfobacterium autotrophicum HRM2] Length = 473 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 13/224 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58 + + + + + + H+I +P+G I +S ELL + G ++ +I S+ Sbjct: 246 EEKLRRAEHLSAIGEMTAGVSHEIRNPLGIIKSSAELLKKKMEKLGTSTTIVDIIVEESL 305 Query: 59 SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +K + IE +I++ + + + Sbjct: 306 RLNNIIKDFLDYARPRNPDLHPCRIKEVLEKNIAAIEPLIQEKCLEIETRFNDNIPKIMA 365 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + LN+ + A ++ GG++ ISV + I + G E +I + Sbjct: 366 DAPMLYQAFLNVLLNAIQAMDDGGRIIISVFADNSNIIILFEDEGKGI-SEEALKKIWNP 424 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + V + ++ Sbjct: 425 FFTTKDMGTGLGLGIVKNIIESHDGEIDISNRASMGVQVEIVIP 468 >gi|218895391|ref|YP_002443802.1| putative sensor histidine kinase [Bacillus cereus G9842] gi|218542923|gb|ACK95317.1| putative sensor histidine kinase [Bacillus cereus G9842] Length = 337 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + S + L S I HDI +P+ +I ++ L + + E ++++ + Sbjct: 95 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYM 154 Query: 56 SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + S + L + + + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G V + + ++ E + G + Sbjct: 215 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + E + + K Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 331 >gi|168701012|ref|ZP_02733289.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 659 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 60/242 (24%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53 A+ + S L AL L I HD + + I EL + Sbjct: 277 ARARDQMIRSQRLEALGTLAGGIAHDFNNLLAGIFGFAELAQSADDLGAAREHCGQLVRV 336 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R V + ++ ++ + ++V +S Sbjct: 337 ATRARELIAQVLAFARPQPDGREPVSLPAVVRELLPLMRASFSKGIAIEVRLAESGALVS 396 Query: 113 RER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154 + + +LNL A ++PR + ++ Sbjct: 397 ADGGQLHQAVLNLCTNAAQAMPRGGRLSVRVEVVDLADPVPADLCPLSPGPHAKLTVADT 456 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G P+ + + + + V + ++ + Sbjct: 457 GTGM-TPDTLRRAFEPFFTTKPVGQGTGLGLSVVHGIVCAHRGAIRVTTEPGAGTTFEVY 515 Query: 213 LE 214 L Sbjct: 516 LP 517 >gi|126643383|ref|YP_001086367.1| two-component sensor [Acinetobacter baumannii ATCC 17978] Length = 394 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78 I H++ +P+ + +E + + + S R+ + +++ Sbjct: 173 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 232 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 233 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 292 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 293 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 352 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L + ++ +A+ K Sbjct: 353 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 387 >gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52] gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395] gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27] gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52] gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395] gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27] Length = 984 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + ++ + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|291561658|emb|CBL40457.1| Signal transduction histidine kinase [butyrate-producing bacterium SS3/4] Length = 347 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + ++ + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQDQEEYVKKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G + + ++ K+ +F L+ G F + + + + + Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQTDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|237794329|ref|YP_002861881.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] gi|229262203|gb|ACQ53236.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 454 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + +++ + L L S I H+I +P+ + N+LE + + + +E + + Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272 Query: 55 LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101 + L + + F + + + I + ++ Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQTIFLDELIADICSDFYAIAENKNIKLQYHIE 332 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL A GG+V I + S + +K NG + Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392 Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F ++ G+ + + I V + + + E + +K Sbjct: 393 DLPFIFERLYRGDKSRHQFEGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKIYFDK 450 >gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 902 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 65/247 (26%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L + A + + H+I +PI + L+LL+ ++ E I Sbjct: 492 RKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVMGMLQLLETTPLDAEQASYI 551 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------D 97 +++ +A + + + + + + I+D I + Sbjct: 552 HMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHIQDIIDSVTGLFAVTARNKGLILE 611 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLK 152 R+ G + ++L NL A RG + + Sbjct: 612 CRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERGRVEMDISALSAKDEDTCRVHLCVT 671 Query: 153 INGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + V+ + + V L + E Sbjct: 672 DTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGLSIVHRLVALMAGTISIESAPGEGT 731 Query: 208 VLSALLE 214 + +L Sbjct: 732 SVHVVLP 738 >gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136] gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136] Length = 1466 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 74/234 (31%), Gaps = 25/234 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS 59 +I +S + L + I H++ +P+ I +E L E + +I ++ Sbjct: 930 SIEQEISDIKLR--FFTNISHELRTPLTLITGPVEQLLNNKTIEDKAREQLLIIERNANR 987 Query: 60 AIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + V L I Q++E+F + ++ + + Sbjct: 988 MLRLVNQILDFRKIQNKKMKMHVQQFDLLPFIRQIMENFNYLANEQHINLSLNAPEHPVI 1047 Query: 115 RA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 KI+ NL A P+ + + V +++ S+ G + ++ Sbjct: 1048 LWADIDKLEKIIFNLISNAFKYTPKEKNIIVKVTENEKIISISIIDQGIGMTKNQLK-RL 1106 Query: 168 VDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T +S I L + + E + + L+K Sbjct: 1107 FIRFETFSDQHIHTQESTGIGLSLTKELVEMHNGTITVESQPNEGSCFTVNLQK 1160 >gi|168182888|ref|ZP_02617552.1| sensor histidine kinase [Clostridium botulinum Bf] gi|182674042|gb|EDT86003.1| sensor histidine kinase [Clostridium botulinum Bf] Length = 454 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + +++ + L L S I H+I +P+ + N+LE + + + +E + + Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272 Query: 55 LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101 + L + + F + + + I + ++ Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQTIFLDELIADICSDFYAIAENKNIKLQYHIE 332 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL A GG+V I + S + +K NG + Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392 Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F ++ G+ + + I V + + + E + +K Sbjct: 393 DLPFIFERLYRGDKSRHQFEGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKIYFDK 450 >gi|153955812|ref|YP_001396577.1| histidine kinase-related protein [Clostridium kluyveri DSM 555] gi|219856179|ref|YP_002473301.1| hypothetical protein CKR_2836 [Clostridium kluyveri NBRC 12016] gi|146348670|gb|EDK35206.1| Histidine kinase-related protein [Clostridium kluyveri DSM 555] gi|219569903|dbj|BAH07887.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 745 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 73/231 (31%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 + N ++ L + + I HD + + I+ S +L++ + +E + I++ Sbjct: 505 LKNNQERLINQEKLALLGQMGASIVHDTRNFLTTINGSCQLIELYSDDVKINECAKRIKM 564 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGE 107 + + + + D+ +++ + + Sbjct: 565 DTDEINRIMSDFLTLAKPANIAVEEVSVYDLLSSVKNLLQTSSLIKGINIEFKFNHDERY 624 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEK 163 + +++LN+ A ++ + + + NE + NG E Sbjct: 625 LMCDQVRIRQVILNICKNAIEAMENVEQPVLKIQTDIDEFTNEIYVGITDNGAGI-PKEI 683 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ + + + + E+K R+ + + + +L Sbjct: 684 ISKLGTPFFTTKKNGTGLGLSSCFQIISEHKGRIEIKSELNVGTTFTIILP 734 >gi|108760079|ref|YP_635068.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463959|gb|ABF89144.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 588 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 57/218 (26%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L + + HD+ +P+G + LL + I+ ++ + + Sbjct: 350 LLAVVSHDLKNPLGVVQLGAALLLRGAGAKPGGESVAKQATRIQDATERMSRLISDLLDW 409 Query: 71 FG-YTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 G + G + + A R+ V + + + ++ ++L Sbjct: 410 GRLEAGGLPLEWGEHGVVGLLTEALDSIRPLAEAKRLRLSVEFPAAGVRVRCDKVRVLQV 469 Query: 122 LFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--I 176 L A GG + + + E ++ G+ Sbjct: 470 LGNLLGNAVKFTTAGGDLMLGARARGGEVSVHVRDTGSGITPDALPHIFDRYWQARDAAS 529 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + E V + L Sbjct: 530 RGTGLGLAIAKGLVEAHGGGIQAESTLGEGSVFTFTLP 567 >gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402 065] Length = 615 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 KNI S L+ S I H++ +P+ I +++LLD + +D+ ++L Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKL 405 Query: 53 IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103 I+ + + + + Y + V + + Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E+ ++ + KI + A GG + ++++DS+ +K G Sbjct: 466 TEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPS 525 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + V + + L Sbjct: 526 DKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTINSELGKGTEFIIKLP 584 >gi|326780366|ref|ZP_08239631.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326660699|gb|EGE45545.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 388 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 160 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAGRVTRLIAELLD 219 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 VD + Q + R +V G L + ++ Sbjct: 220 ISRIDSGRLELRRQPVDVSAAVARHIQALITGGQAPDRFRVRARGPLPALWADPDKVDQV 279 Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 L NL A D + ++ G Sbjct: 280 LGNLLENAVRHGEGTVTIEIAPAPAPGADDETGTAVTVSDEGPGIPEESMSRVFTRFWRG 339 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + + +L Sbjct: 340 SKRGGTGLGLYIVKGIVEAHGGTITVDRGPGGGAEFRFILP 380 >gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 894 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 31/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 + K S + S++ H+I +P+ I +EL +DE G + I S Sbjct: 361 LEKERAEAASRAK--SDFLSQMSHEIRTPLNGIMGMVELGKNHIDEPGRMRNCLDKITFS 418 Query: 57 SMSAIIR-LKFMRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVS 103 S + + ++ +G ++ L Q I I ++ Sbjct: 419 STHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVFHVQAINRQIDFQIFLRGE 478 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLA 158 T + + +IL NL A P T+ D + F +K G Sbjct: 479 VTEYLVGDALRLNQILTNLLSNAVKFTPAQGSVNLNIETLRRDDHRIWLRFEVKDTGRGI 538 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 PE +I + + + + V + Sbjct: 539 -APENIHRIFEPFTQENSGIARNYGGTGLGLPITRSFTEMMGGSITVSSEVGTGSVFTVD 597 Query: 213 LE 214 L Sbjct: 598 LP 599 >gi|258507900|ref|YP_003170651.1| two component sensor transduction histidine kinase [Lactobacillus rhamnosus GG] gi|257147827|emb|CAR86800.1| Two component sensor transduction histidine kinase [Lactobacillus rhamnosus GG] gi|259649227|dbj|BAI41389.1| two-component sensor kinase [Lactobacillus rhamnosus GG] Length = 555 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 21/225 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + H++ +P+ AI E L ++ D+ +++I S + Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLI 383 Query: 65 KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + V ++ + + R+ Sbjct: 384 NDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKL 443 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I+ NL A G VTI+ Q + ++ G E +I + Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETE-QARIFERFYRVD 502 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L ++ + L Sbjct: 503 KARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547 >gi|256829166|ref|YP_003157894.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578342|gb|ACU89478.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 912 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 76/231 (32%), Gaps = 20/231 (8%) Query: 3 KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + I L + L A+ L + H+I +P+ I +LL+ +++ + + S Sbjct: 532 QQINLQLLQTERLAAVGQLAAGAAHEINNPLAIISARTQLLESRENDEKKRRDLHQISEQ 591 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110 ++ G+ + DI ++ I + + + + + Sbjct: 592 IERISSILQSLMGFARPNAPQVINLDINSLLLKIIGLVESIFQTHRIPIVQSLAPDLPLI 651 Query: 111 --LSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++ LNL + A ++ + G V+ + S++ G PE + Sbjct: 652 LADANQLEQVFLNLVINAQHAMEKEGGVLTVSSAFMPDGKRISISVRDTGTGI-SPENLS 710 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + +L Sbjct: 711 RIFDPFFSTKSEGKGTGLGLSTAYGIVTNHYGEIKVISTPGQGTEMIVVLP 761 >gi|225376456|ref|ZP_03753677.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM 16841] gi|225211832|gb|EEG94186.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM 16841] Length = 470 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 60/216 (27%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR------------ 63 S + HD SP+ +I +E + + ++++ + +I + Sbjct: 249 SNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQEKYLNIILFETERLNKLTKSLLELNKFGS 308 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 M + + L E + + + + ++L NL Sbjct: 309 HGVMLDVTDFDINQTIKTTLLTFEGICANKHIRFNLILSGEQLFVTADFSKIQQVLYNLI 368 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--S 178 A + +TI + ++ S+K G + + + ++ D Sbjct: 369 DNAIKFSHQDSTITIETTEKNDKVFVSVKDTGIGIPKDSLKKIWERFYKTDLSRGKDKRG 428 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 429 TGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 464 >gi|206579898|ref|YP_002240949.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae 342] gi|206568956|gb|ACI10732.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae 342] Length = 761 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L M V L + HD + + I SLEL++ + + ++ Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + +V L ++ +++ + +++ + Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506 Query: 115 RAKIL---LNLFMVAHASLPRGGKVTISVQDSKN----------ENIFSLKINGNLARFP 161 ++ +NL M A ++ V ++ + +G+ Sbjct: 507 VGQLENALINLVMNARDAMAGCDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621 >gi|223938141|ref|ZP_03630038.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223893185|gb|EEF59649.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 846 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----- 57 + M+ + L I HD+ + + I + EL+ +E QLI + Sbjct: 454 EKQFLRAQRMESIGTLAGGIAHDLNNMLAPILMTCELMKMELPGEENQQLIAMIEGNAKR 513 Query: 58 --MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 L F R G S+ + +I +I + R+Q LS + Sbjct: 514 GSELVKQVLSFARGVEGCYLSLQPRHLIREIASIIGETFPKSIRIQTRIAENLWPLSGDP 573 Query: 116 ---AKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNL 157 +++LNL + A ++P G + + + + G Sbjct: 574 TQLHQVMLNLSLNARDAMPSGGDLTITAENIEIDAANRPMNLQAKPGSYVVIKVTDTGTG 633 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + + + + + L Sbjct: 634 I-APEMREKIFDPFFTTKEVGEGTGLGLSTALGIVKSHSGFINVYSEPGKGSTFEVWLP 691 >gi|241204893|ref|YP_002975989.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858783|gb|ACS56450.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 867 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 73/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + LI + Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLIEIK 523 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151 + ++L+NL + A ++P GG S +++ + + Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 643 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 NG PE +I + + + V + ++ + PE Sbjct: 644 ADNGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702 Query: 210 SALLEK 215 L + Sbjct: 703 RVFLPR 708 >gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] Length = 324 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 61/245 (24%), Gaps = 35/245 (14%) Query: 2 AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 ++ + + ++ + + H++ +P+ AI E+L E + L+ Sbjct: 68 EESQKARVQAEEANKAKSIFVANMTHELRTPLNAIIGYSEMLQEEAEDTGQKDLVPDLEK 127 Query: 54 ----------------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 S + A ++ T D + + + + + + V+ Sbjct: 128 IASAGKHLLALINDVLDFSKVEAGKMGLYLEEFEINTMLQDVIGTIKQVIEKNNNHLIVN 187 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKIN 154 + G + + L NL A+ + Q ++ + Sbjct: 188 YPKNL---GIMQSDVTKVRQCLFNLLSNANKFTETGTITLQANRYSQKGEDWISLKVSDT 244 Query: 155 GNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + D + + + E Sbjct: 245 GIGMTADQIEKVFLAFTQADASTTRKYGGTGLGLVITKQFCQMMGGEVNVESQFGKGSTF 304 Query: 210 SALLE 214 S L Sbjct: 305 SINLP 309 >gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 645 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 55/225 (24%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63 + S + H+I +P+ + ELL + E + + SA Sbjct: 265 SQFLSNMSHEIRTPMSGVLGMTELLGFTELTPEQHEYLNDIKASADNLLSIINDILDLSK 324 Query: 64 ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + A + +++E + ++ ++ +IL Sbjct: 325 IEAGKIELEAANFSLQQCIRTTTAMQMPRILEKHLQIETKISPEIPEVVNGDQLRVKQIL 384 Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 LNL A G ++ S+ G E +I D Sbjct: 385 LNLLSNAVKFTAHGQISIQASLLESRNEHLLVQISVSDTGVGI-AAEALDRIFDPFTQAD 443 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA + E + L Sbjct: 444 ASTSRKFGGTGLGLAICRQLAELMGGGIRVESEEGKGSRFHLRLP 488 >gi|116252386|ref|YP_768224.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257034|emb|CAK08128.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 867 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 73/246 (29%), Gaps = 33/246 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + + A+ L I HD + + AI S + LL + LI + Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLIEIK 523 Query: 57 SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106 L F R ++ +GD+ +++ Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151 + ++L+NL + A ++P GG S +++ + + Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 643 Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 NG PE +I + + + V + ++ + PE Sbjct: 644 ADNGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702 Query: 210 SALLEK 215 L + Sbjct: 703 RVFLPR 708 >gi|182439702|ref|YP_001827421.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|62896308|emb|CAH94295.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus] gi|178468218|dbj|BAG22738.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 388 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 160 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAGRVTRLIAELLD 219 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 VD + Q + R +V G L + ++ Sbjct: 220 ISRIDSGRLELRRQPVDVSAAVARHIQALITGGQAPDRFRVRARGPLPALWADPDKVDQV 279 Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 L NL A D + ++ G Sbjct: 280 LGNLLENAVRHGEGTVTIEIAPAPAPGADDETGTAVTVSDEGPGIPEESMSRVFTRFWRG 339 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + + +L Sbjct: 340 SKRGGTGLGLYIVKGIVEAHGGTITVDRGPGGGAEFRFILP 380 >gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 557 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 AK N L + + H+I +P+ AI ELL + + ++++ +S Sbjct: 180 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAANTEEEKQKYLEILHTNSE 237 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105 + + VD + L D+EQ+ I + VQ+ + Sbjct: 238 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQLFRMKIGSNSPVQIITESGLPS 297 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A G +N F + G+ + Sbjct: 298 CMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS-ENGLRFYVSDTGSGISADKLEG 356 Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++S + + + + ++ + E L Sbjct: 357 VFDRFVRLQSDKNGNGLGLSICKTIVNKLGGEIGAESEVGKGSTFWFTLP 406 >gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 557 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 AK N L + + H+I +P+ AI ELL + + ++++ +S Sbjct: 180 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAANTEEEKQKYLEILHTNSE 237 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105 + + VD + L D+EQ+ I + VQ+ + Sbjct: 238 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQLFRMKIGSNSPVQIITEPGLPS 297 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A G +N F + G+ + Sbjct: 298 CMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS-ENGLRFYVSDTGSGISADKLEG 356 Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++S + + + + ++ + E L Sbjct: 357 VFDRFVRLQSDKNGNGLGLSICKTIVNKLGGEIGAESEVGKGSTFWFTLP 406 >gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1116 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 56/239 (23%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + H+I +P+ I ++L E I+ E + + Sbjct: 725 AKEKAEAAYQAK--SEFLATMSHEIRTPMNVIIGLSDILMETPIDHEQRDHLLRLQKANK 782 Query: 62 IRLKFM-----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + + V+ + + I + + Q + Sbjct: 783 TLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGLRLESQVTQATD 842 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160 + +IL+NL A +G + +K G Sbjct: 843 DYWSLGDESRIRQILVNLIGNAVKFTEKGSIWVTLELFTDTLERTLVRLCVKDTGIGIGP 902 Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + + ++ E + L Sbjct: 903 EHLETIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKVWVESNPSQGSLFCVELP 961 >gi|325473732|gb|EGC76921.1| hypothetical protein HMPREF9353_02023 [Treponema denticola F0402] Length = 263 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 72/222 (32%), Gaps = 20/222 (9%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIR 63 +L +L + + + H+I +P+ AI L+LL + + I + Sbjct: 19 ENLASLTNVAAAVAHEIKNPLAAISIHLQLLKKNFTACNLSINQKAQKHIGVIEEEIERL 78 Query: 64 LKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 K + + + ++F + +S++ E + + Sbjct: 79 NKIVVDFLFAVRPLKFEFVPVDINALLKNLYDTFFDEFNDSGIAISLSFSKELPKIQGDE 138 Query: 116 A---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +N+ A +++P GG + IS + + I ++ +G PE +I + Sbjct: 139 RFLRQAFMNVLTNAKSAMPNGGFLDISTKAVNDFIIITISDSGQGI-LPEDMHKIFEPYF 197 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + E+ + L Sbjct: 198 TTKHDGTGLGLTMTYKVIKEHGGDINVYSDYGMGTSFKFSLP 239 >gi|284167284|ref|YP_003405562.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284016939|gb|ADB62889.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 883 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 54/231 (23%), Gaps = 23/231 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 M + L A HD+ P+ + + L+LL+ E ++ Sbjct: 652 MLEESNDRLEQFAYAA------SHDLQEPLRMVSSYLQLLERRYDDDLDEDGQEFLEFAV 705 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWTGE 107 + + + D + + + + + Sbjct: 706 DGADRMREMIDGLLKYSRVETRGDPFETVSLDDVLTEVCDDLQVMIQESNAEITTEDLPR 765 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---K 163 + ++ NL A + ++ + S++ NG + Sbjct: 766 VEGDHGQLRQVFQNLLDNAIEYSGDDPPRIYIDAERDGDQWLVSVEDNGVGIDPEDTDRV 825 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I V + + + E S L Sbjct: 826 FEVFQRLHARGEHAGTGIGLALVERIIERHGGDVWVESDPGQGSTFSFTLP 876 >gi|170744165|ref|YP_001772820.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168198439|gb|ACA20386.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 513 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--------GIE 46 + + + L A+ + S + H++ P+GA+ N LLD+ Sbjct: 264 LQELQAELVHVSRLSAMGEMASALAHELNQPLGAVSNYARGCRRLLDQAGGVPSRALDAI 323 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 D V + + F+ + + + V S Sbjct: 324 DRVAEQALRAGQIIRRLRDFVARGETDKRIEPVSRLIEEASALALVGAREQGVVFRSRLD 383 Query: 107 EKID----LSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLAR 159 ++ + ++L+NL A ++ + I+ + ++ G Sbjct: 384 PQVRAVLADRVQIQQVLVNLIRNAREAMQPVPRREITVEARPAAPGMVEIAVADTGPGI- 442 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ V + + + + RL S L Sbjct: 443 APEVADRLFQPFVTTKATGLGVGLSICRSIVEAHGGRLAVARNAAGGATFSLTLP 497 >gi|281355653|ref|ZP_06242147.1| integral membrane sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281318533|gb|EFB02553.1| integral membrane sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 546 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 19/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSSM 58 M N L + + I HD+ +PI I EL L+ + + + Sbjct: 309 MTANTEKLLKELK---TISDNIAHDLRTPITRIRGKAELAVLNPEDSSELAGDVAEECAE 365 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEK-- 108 + + + +G D+ + + + Sbjct: 366 MLTMINTMLEITQTESGIAQDDFDDLDLTALTAAVLELFSTVAEDKGITLHQELPAQPLS 425 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164 + ++L NL A P GG V++ ++ +E + G F Sbjct: 426 ACGNKVKYQRLLANLLDNAIKFTPSGGTVSVRLEPGDSEFTLRISDTGCGIPPEARSHIF 485 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ + + V + + E + L + Sbjct: 486 ERFYRSDSSRSLPGNGLGLSLVKAIVSVAGGTIEVESEVNRGTTFLVTLPR 536 >gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 583 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 69/240 (28%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS 57 + + L S I H++ +P+ I SL+L + + + + Sbjct: 310 RNELNEKMHFEKLRTDFFSNISHELRTPLNVILGSLQLQGLYIASENTSKYKKEYSKANK 369 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------- 109 + +RL G DI D + + + +S Sbjct: 370 RMKQNSYRLLRLVNNIIDITKIDSGFYDINLENYDINMLIREIVLSVEDYIENAGLQIEF 429 Query: 110 ----------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +I+LNL A GGK+ ++V+ +N S++ G Sbjct: 430 KANTNQAIIACDPEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQNRIFMSVRDTGIGIP 489 Query: 160 FPEK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + I V LL +K ++ + L Sbjct: 490 QEKINSVFERFKQVGSYSHRKNEGSGIGLSLVRLLIEAHKGKVTVRSKLNEGTEFIIELP 549 >gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides vulgatus ATCC 8482] gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response regulator receiver domain [Bacteroides vulgatus ATCC 8482] Length = 1045 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + L + + H+I +P+ AI +L E E + I + + Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILAAAEEEQEKQEYINIIESNNT 732 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + ++ D + + + + + + VQ Sbjct: 733 LLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTESNGIQLIVQKGLPSC 792 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + R +LN + + G +T + E F +K G + + Sbjct: 793 LIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDKELYFYVKDTGCGIPADKVNSIF 852 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + R+ E + + Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900 >gi|147676382|ref|YP_001210597.1| signal transduction protein [Pelotomaculum thermopropionicum SI] gi|146272479|dbj|BAF58228.1| hypothetical signal transduction protein [Pelotomaculum thermopropionicum SI] Length = 414 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 17/219 (7%), Positives = 53/219 (24%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS------MSAIIRLKFMRL 69 + + + + HD+ +P+ I + L + + + + + Sbjct: 181 SEMLAGLSHDLRTPLACIKGYITTLMREDVTWDPADEKEFMNIIVEETDHIESLINNLLD 240 Query: 70 AFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + ++ + ++ + + ++ Sbjct: 241 STTFSWKGEIELRKELISLPQIVNKVLRDPSYRIKNHQFTVLFPEGFPLVEADPVRIEQV 300 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175 L NL A ++ I + E + S+ G F + ++ Sbjct: 301 LRNLVDNAVKYSMEDTQIVIKGEAMAGEIVVSIADQGIGIDSEHLKWLFEKFFRVGIKEN 360 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + L Sbjct: 361 NKGMGLGLPLARQILISHGGRIWAESKLNQGTTFYFTLP 399 >gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1261 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 59/242 (24%), Gaps = 27/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + A + + H+I +P+ A+ L + + + + S Sbjct: 513 MKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFSG 572 Query: 61 IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 L + + D L ++ +I + + + Sbjct: 573 QHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNL 632 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160 I +IL+N A +G +D ++K G + Sbjct: 633 PRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKP 692 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213 D + + +A + E L Sbjct: 693 EHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCL 752 Query: 214 EK 215 +K Sbjct: 753 QK 754 >gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A] gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1045 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + L + + H+I +P+ AI +L E E + I + + Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILAAAEEEQEKQEYINIIESNNT 732 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + + D + + + + + + VQ Sbjct: 733 LLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNGIQLIVQKGLPSC 792 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + R +LN + + G +T + E F +K G + + Sbjct: 793 LIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDKELYFYVKDTGCGIPADKVNSIF 852 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + R+ E + + Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900 >gi|197117193|ref|YP_002137620.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086553|gb|ACH37824.1| sensor histidine kinase response regulator, PAS, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 953 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 66/244 (27%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 KN+ L S L A+ L I HD + + I LL+ + E++ I Sbjct: 569 RKNLEEQLRHSQKLEAVGHLAGGIAHDFNNLLTVIGGYASLLEMKMEPGDPKAEMVDQIV 628 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107 S+ A + + L +I Q + F+ ++ + Sbjct: 629 ASTDRAANLTRSLLAFSRKQEMHADDCSLNEIVQGVGKFLRRIIGEDITLSTTLGPEPLT 688 Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152 + ++++NL A ++ + + + Sbjct: 689 VFADKGQIEQVIINLATNARDAMENGGAFSISTGLTVFDGRFIQSRGFGKPGKFAVVKVS 748 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G +I + + + V + ++K + + S Sbjct: 749 DTGKGIDKG-VRGKIFEPFFTTKEFGKGTGLGLSIVYGIVKQHKGYIDVDGHPGKGTTFS 807 Query: 211 ALLE 214 L Sbjct: 808 IYLP 811 >gi|85708496|ref|ZP_01039562.1| two-component signal transduction histidine kinase [Erythrobacter sp. NAP1] gi|85690030|gb|EAQ30033.1| two-component signal transduction histidine kinase [Erythrobacter sp. NAP1] Length = 421 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 50/218 (22%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRL-A 70 + H++ +P+ AI +E L + + + +I + + + Sbjct: 171 FVANASHELRTPLAAILGYVETLRESGDSLDSPTSQKFLGIIEREGQRLQNLISDLMSLS 230 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNL 122 D ++ + E ++ +++ NL Sbjct: 231 RVEAEKHDLPETRLELAALTERAACDAAGTNRIDRLKLEILSDPLVKGDLQQLEQVVRNL 290 Query: 123 FMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVD--GNVESTI 176 A + ++ G+ + + Sbjct: 291 VDNALKYGSADTSVTVRLDRSQDGMARIAVTDQGDGIAPEQLPHLTRRFYRTDPGRSRAS 350 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ RL + + L Sbjct: 351 GGTGLGLAIVKHIVERHRGRLNIDSDLGKGTRVVVRLP 388 >gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33] gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33] gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9] gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33] gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9] gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33] gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] Length = 984 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + ++ + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|291527505|emb|CBK93091.1| Signal transduction histidine kinase [Eubacterium rectale M104/1] Length = 479 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK---FMRLA 70 S + HD SP+ +I +E + + ++D+ + +I + K + Sbjct: 256 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLIDLNQF 315 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLN 121 + +D + K + + + +IL N Sbjct: 316 GHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLTGKELFVRGDMVKIQQILYN 375 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177 L A + I + S+K +G + + + ++ D Sbjct: 376 LIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDSLSKIWERFYKSDLSRGKDK 435 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 436 RGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLP 473 >gi|291524451|emb|CBK90038.1| Signal transduction histidine kinase [Eubacterium rectale DSM 17629] Length = 479 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK---FMRLA 70 S + HD SP+ +I +E + + ++D+ + +I + K + Sbjct: 256 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLIDLNQF 315 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLN 121 + +D + K + + + +IL N Sbjct: 316 GHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLTGKELFVRGDMVKIQQILYN 375 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177 L A + I + S+K +G + + + ++ D Sbjct: 376 LIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDSLSKIWERFYKSDLSRGKDK 435 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 436 RGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLP 473 >gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 1045 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + L + + H+I +P+ AI +L E E + I + + Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILAAAEEEQEKQEYINIIESNNT 732 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + + D + + + + + + VQ Sbjct: 733 LLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNGIQLIVQKGLPSC 792 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + R +LN + + G +T + E F +K G + + Sbjct: 793 LIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDKELYFYVKDTGCGIPADKVNSIF 852 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + R+ E + + Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900 >gi|238925263|ref|YP_002938780.1| sensory transduction histidine kinase [Eubacterium rectale ATCC 33656] gi|238876939|gb|ACR76646.1| sensory transduction histidine kinase [Eubacterium rectale ATCC 33656] Length = 479 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK---FMRLA 70 S + HD SP+ +I +E + + ++D+ + +I + K + Sbjct: 256 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLIDLNQF 315 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLN 121 + +D + K + + + +IL N Sbjct: 316 GHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLTGKELFVRGDMVKIQQILYN 375 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177 L A + I + S+K +G + + + ++ D Sbjct: 376 LIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDSLSKIWERFYKSDLSRGKDK 435 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 436 RGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLP 473 >gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus DSM 14838] gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus DSM 14838] Length = 1031 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66 S L + + + H+I +P+ AI L+ + ED + + + M + Sbjct: 661 QSDKLKSAFLANMSHEIRTPLNAIVGFSGLMMYASDEEKEDYMQIINNNNEMLLKLISDI 720 Query: 67 MRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRER 115 + L+ GSV+ + A + ++Q+ Sbjct: 721 LDLSKLEAGSVELKYEEFDLTDYFNSMFASMKQRATNPKIQIVAVNPYQHCLVTLDRNRV 780 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 A+I+ N A G + F +K +G +K Sbjct: 781 AQIITNYVTNAIKYTTEGTIEMGYEYR-EEGIYFYVKDSGIGIPDEKKNKVFHRFEKLDE 839 Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + E + ALL Sbjct: 840 FAQGTGLGLSICKAIAEAMGGNVGFESEYGKGSLFWALLP 879 >gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855] gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855] Length = 1045 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK+ + + L + + H+I +P+ AI +L E E + I + + Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 732 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L+ + ++ D L + + + + + Sbjct: 733 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETCGIQLIAHKGLPSC 792 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I + R +LN + + G +T + E F +K G + + Sbjct: 793 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCGRELYFYVKDTGCGIPADKVNSIF 852 Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + E ++ + Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGHIGVESEEEKGSTFWFTIP 900 >gi|254437492|ref|ZP_05050986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198252938|gb|EDY77252.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 354 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 19/239 (7%), Positives = 64/239 (26%), Gaps = 35/239 (14%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64 + D+ + + H++ +P+ ++ +E L + + + ++ + + Sbjct: 109 DANDMRRDFVANVSHELRTPLTSLLGFIETLRGPARDDSAAQTRFLGIMEQEARRMHSLV 168 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----------- 113 + + G + D + + + G + Sbjct: 169 QDLMSLNRVEGQERIKPTQQTDLCALMDDVLAAMKPRADTAGVSLMSDHPNEAVYVLADR 228 Query: 114 -ERAKILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + +++ NL A R ++ S+ +G+ Sbjct: 229 DQMWQVIANLVENALKYGKKSGSNDGIVTVRLSAPQHEPALLQSGVRLSVIDHGDGIAAH 288 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + + ++ RL + +A+L Sbjct: 289 HL-ARLTQRFYRVDSHRNREVGGTGLGLAIVKHIINRHRGRLRISSVVGQGTEFTAVLP 346 >gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 583 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 73/249 (29%), Gaps = 37/249 (14%) Query: 3 KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDE----VM 50 + + L + + A + + H++ +P+ AI E+L + + + Sbjct: 297 RRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAIIGFSEMLADPQLCPQDPLKQR 356 Query: 51 QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + S L + + ++ + Sbjct: 357 EYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVLAPLIASCCAMLRPQAEAKEI 416 Query: 100 VQVSWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLK 152 V + D + +ILLNL A PR G+VT V D ++ +++ Sbjct: 417 ELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGRVTIAVDCVVDCLDDIQIAVQ 476 Query: 153 INGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G + ++ + + + + V L + LL E D Sbjct: 477 DTGIGISADDLT-RLGEPFFQAMVRQERPHEGTGLGLSIVRGLVELHGGTLLIESEPDQG 535 Query: 207 VVLSALLEK 215 + L + Sbjct: 536 TSMIVRLPR 544 >gi|149190795|ref|ZP_01869060.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1] gi|148835357|gb|EDL52329.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1] Length = 568 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 54/236 (22%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K+ +S + I H++ +P+ + S+ELL + ++ +L S S Sbjct: 186 LVKSKERAEASERSTREFLAMINHELRTPLNGLLGSVELLADTDLKGAQQELHSNLSQSG 245 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104 + + L + L I + + + Sbjct: 246 QLLRSIINDLLDFSKIDAGMLELIESTFKWTNLQSTLCSIFEHKAAEKQIGFTICADGFS 305 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +I +NL A G FS+ G Sbjct: 306 NKNFKGDLERITQIFVNLIGNAIKFTDEGSVKVTLTSQEGG-IGFSVTDTGIGISQT-AQ 363 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + L + L Sbjct: 364 KKLFQPFIQADRSSSRNYEGTGLGLAICKRLVELMGGSISLTSELGQGTTFYGFLP 419 >gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51] gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51] Length = 1020 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 493 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 552 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 553 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 612 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 613 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 672 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 673 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 726 >gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 590 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 62/221 (28%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF------ 66 S + H++ +P+ +I E L + + D +++I S + Sbjct: 367 FVSSVSHELRTPLTSIKGYTETLLDGAMHDPEHAAAFLRIILQESEQLTALVNDVLDLSR 426 Query: 67 --MRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKILLNLF 123 D L +++ I ++ + + E + + A + + + Sbjct: 427 IESGKIDYRFAPTDLRSILQKSSELVLPAIEKKKIKLDMQFQEELPLVYADAAYLEIAVR 486 Query: 124 MVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 + ++ + S++ I + NG + +I + Sbjct: 487 NLLDNAVKYVEDTVGRIRVTAYKSESNVILEVHDNGLGIHPSDL-DRIFERFYRADKARS 545 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + +K + + V L Sbjct: 546 RQSGGTGLGLAIVKHIVLAHKGTIEVHSRLNQGSVFRMSLP 586 >gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 1297 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 61/233 (26%), Gaps = 27/233 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + + L L H++ SP+ I + LL ++ + Sbjct: 922 DRANRIKDEFLAVL-----SHELRSPLNPILGWIRLLQNGKLDLPRQTEALKTIERNAKL 976 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------------VDKRVQVSWTGEKID 110 + + + F+ + ++ + + Sbjct: 977 QSQLIEDLLDISRIMQGKLTLTAAPISLTFVISAAIETVRLAAEAKNIQILLDLSTTVSY 1036 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---- 163 +S + +++ NL A PRGG+V + ++ + G Sbjct: 1037 VSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELKQLDQLAQIRVSDTGKGIDPQFLPYVF 1096 Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + + D + V + + + E +D + + L Sbjct: 1097 EYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGTVKAESLGEDRGAIFTVQLP 1149 >gi|326799486|ref|YP_004317305.1| integral membrane sensor signal transduction histidine kinase [Sphingobacterium sp. 21] gi|326550250|gb|ADZ78635.1| integral membrane sensor signal transduction histidine kinase [Sphingobacterium sp. 21] Length = 579 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 57/235 (24%), Gaps = 27/235 (11%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 L+ + + + + H+I +P+ AI + L+ + E +++ S+ + + Sbjct: 341 RAIALAEQK--SEMLATMSHEIRNPLTAITGFVYLMKNTPLTAEQNRMVSSIKASSDMLM 398 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------------TGE 107 + T + + + + + Sbjct: 399 DTVNDILDMTKVESQQSEVLKVVSFTPFHEIKETVETMRFIAIKKNISLNFSFDGSQDEM 458 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPE 162 ++++NL A GG + +K +G + Sbjct: 459 VYGDPFRLKQVVINLLGNAIKYTDIGGVEVYCTMKKGEQDGMQELTVRIKDSGIGIPQEQ 518 Query: 163 KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y L + E + S + Sbjct: 519 QTKLFTKYYQAGKENARPGTGLGLYICYQLIKLQHGDIYVESEEGKGSTFSFRIP 573 >gi|312959223|ref|ZP_07773741.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] gi|311286483|gb|EFQ65046.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] Length = 344 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 63/206 (30%), Gaps = 13/206 (6%) Query: 21 RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + H+I +P+G I + +LL + ++ + + Sbjct: 128 GLAHEIRNPLGIIKTATQLLHRRADLPDTDKRHLEYVISEVSRINDLITEFLDFAKPNPP 187 Query: 77 VDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128 + +L + + I F + Q+ + + ++ A Sbjct: 188 LRALQPARPLVEEILGFCAPELATHNIDAQIDDQAPGATIYADAKQLKQACLNLILNAID 247 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG++T+ ++ + + S+ +G + +I V + + V Sbjct: 248 AMPDGGRLTVGIRTADGNTVISIADSGQGI-AADMIERIFTPFVTTKASGTGLGLAKVYS 306 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D S + Sbjct: 307 IMESHDGSIECASEKDAGATFSLYIP 332 >gi|284164195|ref|YP_003402474.1| multi-sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284013850|gb|ADB59801.1| multi-sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 1195 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 56/230 (24%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 + + + ++ A S HD+ P+ + + L+L++ ++ + + I + Sbjct: 965 QRKLEESNERLEQFAYAAS---HDLQEPLRMVTSYLQLIENRYADELDADGREFIDFAVD 1021 Query: 59 SAIIRLKFMR---------LAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEK 108 A + + VD L + D + Sbjct: 1022 GAERMREMIEGLLAYSRVETRGDPFEPVDLEETLEAVRRDLELQIEESDAEITADSLPRV 1081 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---KF 164 + ++ NL A + + S+ G + F Sbjct: 1082 RGDPSQLRQVFQNLLSNAIEYSGPEPPRIHLEAERKGDRWRVSVTDEGIGIDPEDADRVF 1141 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D I + + + E S L Sbjct: 1142 EIFQRLHGREEHDGTGIGLALCQRIVERHGGEIRVESEPGEGSTFSVTLP 1191 >gi|228908953|ref|ZP_04072783.1| hypothetical protein bthur0013_31090 [Bacillus thuringiensis IBL 200] gi|228850675|gb|EEM95499.1| hypothetical protein bthur0013_31090 [Bacillus thuringiensis IBL 200] Length = 436 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSLRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQENHNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S+ + + V + + ++ E + L Sbjct: 376 KIWDRFYRVDAARTSSSTGNTGLGLSMVKWIVELHGGKITVESELGEGSTFTFKLP 431 >gi|228992748|ref|ZP_04152674.1| hypothetical protein bpmyx0001_34870 [Bacillus pseudomycoides DSM 12442] gi|228767080|gb|EEM15717.1| hypothetical protein bpmyx0001_34870 [Bacillus pseudomycoides DSM 12442] Length = 424 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 18/224 (8%), Positives = 65/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++++ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIISELAASVAHEVRNPLTVVRGFIQLLESTEDMKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ + ++ + I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNIVKNGIEAIQENKGYLKVTAIQKDDVIIVRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIITLP 418 >gi|218232217|ref|YP_002365187.1| sporulation kinase [Bacillus cereus B4264] gi|218160174|gb|ACK60166.1| sporulation kinase [Bacillus cereus B4264] Length = 408 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 243 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 303 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 406 >gi|91781650|ref|YP_556856.1| histidine kinase [Burkholderia xenovorans LB400] gi|91685604|gb|ABE28804.1| histidine kinase [Burkholderia xenovorans LB400] Length = 666 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 66/248 (26%), Gaps = 34/248 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGI--EDEVMQL 52 + + + L AL + + I H++ P+ A+ + LL+ E ++ Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQVSARENLEA 463 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------- 99 I + ++L G + + + + + + Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRSARAPIVRALRNVVALLQKRLQGVEVELVLFDAQS 523 Query: 100 --------VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149 ++L+NL A + IS++ F Sbjct: 524 GTRAPLSLADDHPELVAHCDDLRLEQVLINLLGNALDATADINSPRISIEIEVADANLSF 583 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 ++ NG + ++ + + + +A + L+ Sbjct: 584 AVSDNGPGI-ADDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGSLVARNAPGGGA 642 Query: 208 VLSALLEK 215 + L + Sbjct: 643 LFVLTLRR 650 >gi|30018601|ref|NP_830232.1| sporulation kinase [Bacillus cereus ATCC 14579] gi|296501171|ref|YP_003662871.1| sporulation kinase [Bacillus thuringiensis BMB171] gi|29894142|gb|AAP07433.1| Sporulation kinase [Bacillus cereus ATCC 14579] gi|296322223|gb|ADH05151.1| sporulation kinase [Bacillus thuringiensis BMB171] Length = 408 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 243 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 303 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 406 >gi|83953660|ref|ZP_00962381.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter sp. NAS-14.1] gi|83841605|gb|EAP80774.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter sp. NAS-14.1] Length = 347 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 16/241 (6%), Positives = 58/241 (24%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++I ++ + + + H++ +P+ A+ +E L + D + ++ + Sbjct: 103 QDITQVTNASQMRRDFVANVSHELRTPLTAMMGFIETLRGPARDDAPARDRFLGIMTGEA 162 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWT 105 + + + + + Sbjct: 163 ERMNRLVGDLLSLSRVESDERVRPTDKVDLRYVLQSTMRNLNPLAVEANVTLVATMGDDP 222 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLA 158 + + + ++ NL G V +++ +G Sbjct: 223 LPLMGDTDQLLQVFTNLIENGIKYGGVGKDVEISVETTLRDPSLRGPAVRVTIRDHGPGI 282 Query: 159 RFPEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + V + + ++ RL + +L Sbjct: 283 DPVHLPRLTERFYRADSHRSRALGGTGLGLAIVKHILNRHRGRLKITSDLGDGARFTVIL 342 Query: 214 E 214 Sbjct: 343 P 343 >gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74] gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74] Length = 906 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ 51 M +++ + S + H+I +P+ +I E+L + + E + Sbjct: 663 MTQHLSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILHDQADMDESMRQEFLS 722 Query: 52 LIRLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + + + + + ++ Q+ D + Sbjct: 723 RVIRETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQLARDKQVTLEI 782 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 ++L+NL A P G VT+ + +++ NG Sbjct: 783 CPTQAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLTIRDERVNLTVRDNGIGI 842 Query: 159 RFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 P+ I + + + + + ++ + + Sbjct: 843 -EPDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSVPGEGAEFTCS 901 Query: 213 LE 214 L Sbjct: 902 LP 903 >gi|262199968|ref|YP_003271177.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262083315|gb|ACY19284.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 532 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 65/242 (26%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----------DEVGIEDEV 49 + + S L+A+ + + I H++ +P+ +I + ELL E + +E Sbjct: 283 EERERELVRSERLIAVGKMSAVITHEVRNPLSSIGLNTELLTELVDEGFAEREDELAEEA 342 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----------K 98 L + + + + ++Q+ + + Sbjct: 343 RSLCAAITTEVDRLAAITEEYLQFARLPKPKLQVERVDQIARSLVDFEREQLALRGAELC 402 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLK 152 + + + LLNL A ++ + D + Sbjct: 403 AELAAEDAAARVDDGQMRQALLNLVRNAADAVEAVGGGRVTVATRSTRDDEGEWVEIRVS 462 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G PE ++ + + + + E+ L E + Sbjct: 463 DTGAGI-APEVEPKLYEPFFSTKQGGTGLGLALTHQIIREHGGHLRVEAGPERGATFVIA 521 Query: 213 LE 214 L Sbjct: 522 LP 523 >gi|149923393|ref|ZP_01911799.1| probable serine/threonine kinase protein with two-component sensor domain [Plesiocystis pacifica SIR-1] gi|149815751|gb|EDM75276.1| probable serine/threonine kinase protein with two-component sensor domain [Plesiocystis pacifica SIR-1] Length = 1896 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 68/247 (27%), Gaps = 35/247 (14%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 K + + ++ + L S + H+I +PI I N EL+ + + D ++ Sbjct: 1639 RKALEAQVRQQQRLESIGTLASGVAHEINNPIQGIMNYAELIATRPQLDPMVLDFAREIG 1698 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK 108 + + I + A + + I V +V + Sbjct: 1699 AETERVSQIIRDMLTFARRDSEAEREWAAPKAIVASTLSLVHAIMRKSGMQVMSDLPSDL 1758 Query: 109 IDLSRERAKILLNLFM---VAHASL----------------PRGGKVTISVQDSKNENIF 149 ++ +I L A +L +V + + + F Sbjct: 1759 PEVYCRPQQIRQILVNLLTNARDALGELPAKTLDADNGLRRRIDLRVLVRERAEQRWLRF 1818 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 ++ +G PE I D + + +A E+ +L Sbjct: 1819 EVEDHGPGM-PPEVQAHIFDPFFTTKSRDRGTGLGLAVSHGIAVEHGGKLEVTSELGAGT 1877 Query: 208 VLSALLE 214 L Sbjct: 1878 TFRLSLP 1884 >gi|172057054|ref|YP_001813514.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989575|gb|ACB60497.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 575 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 69/233 (29%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 +++ + A + + H++ +P+ + E + + E +I S Sbjct: 337 RDMTEAQQLEKMRADFVANVSHELRTPLVMLQGYSEAIVDGMTESDEATKEFASIIYDES 396 Query: 58 MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107 + + A ++ + + +++++ F + +VS+ + Sbjct: 397 QRLSRLVNDLLDLARMEAGYQEKRIELIDAVPFAKRMVKKFKQMGLEKRVSFEVTGPDVQ 456 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + +++ NL A G +D + S+ +G+ + F Sbjct: 457 FEADPDQMDQVMTNLLGNALRYTEDGKIKIEITEDRET-ISLSVIDSGDGIPEEDVPFVF 515 Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + I V + + + E V L K Sbjct: 516 DRFYKADKARTRGKTGTGIGLAIVANVVRSHDGEVQVESELGKGSVFRIQLPK 568 >gi|283852142|ref|ZP_06369416.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572532|gb|EFC20518.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 484 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIED------EV 49 + + S L ++ L + + H + +P+ I +LE L+ + Sbjct: 242 ERRQDQLVQSKKLSSIGTLTAGVAHQLNNPLNNISTSSQIALEELETADPAFLKKLLGNI 301 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGE 107 Q + L+F R+ V +++ + R+ + Sbjct: 302 HQETLRARDIVQGLLEFSRVREFSLRLVSLAELARRTVRLVSSQASSGVRLALDVPEDLS 361 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFT 165 + + LLNL + A ++ G+V +E + ++ G + Sbjct: 362 VPADASRLQEALLNLLINAIQAVGGQGEVRLAARRDPDADEAVITVSDTGPGI-PADIRG 420 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + V + ++ + E L Sbjct: 421 RIFDPFYTTKEEGKGTGLGLSIVYGIVEKHAGSVTVESEPGQGAAFHIRLP 471 >gi|220922103|ref|YP_002497404.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219946709|gb|ACL57101.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 524 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 62/243 (25%), Gaps = 32/243 (13%) Query: 2 AKNICFNLSSM--DLV--------ALLCSRICHDIISPIGAIHNSL----ELLDE----- 42 + L + +LV + S + H+I P+ AI + L LL Sbjct: 271 RQRTETRLQELQSELVHMSRFTALGEMASTLAHEINQPLTAIASYLKGCRRLLQRMQGPE 330 Query: 43 ----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVD 97 + + +F+ + + + Sbjct: 331 VPLLADAVGQAADQALRAGQVIRHLREFVARGESERHIEGLPKLIEEASALALVGAKERG 390 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-------QDSKNENIFS 150 RV ++ + + +R ++ L + ++ + + ++ Sbjct: 391 VRVTFAFDPDAPLVLADRIQVQQVLLNLIRNAIEAMQETPRRELVVRTRARPAEGLVEIV 450 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + G PE +Q+ V + + + + ++ E Sbjct: 451 VSDTGTGI-APEIASQLFQPFVTTKARGMGVGLSICRTIVESHGGKIWVESRPGQGADFR 509 Query: 211 ALL 213 L Sbjct: 510 FTL 512 >gi|163735067|ref|ZP_02142503.1| multi-sensor hybrid histidine kinase [Roseobacter litoralis Och 149] gi|161391525|gb|EDQ15858.1| multi-sensor hybrid histidine kinase [Roseobacter litoralis Och 149] Length = 734 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 27/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LD--EVGIEDEVMQLIRLSS 57 A+ ++ V LL I HD + + I S L LD E ++ I +++ Sbjct: 358 AREQVARAQKLEAVGLLAGGIAHDFNNILTTIVGSAHLATLDAPEGSDIAHEIEQIDIAA 417 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113 A ++ + + LG I + + K ++ + Sbjct: 418 HRAQSLVRGLLTFARREPGIPRPTDLGVIITEVSRLLTAAKPPNITLDCTAVQDGMTVLG 477 Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTIS-------------VQDSKNENIFSLKINGNL 157 +I++NL A ++ + Q S F + NG Sbjct: 478 DETHLHQIVMNLCRNAIEAIGGASGDIMVSARRMVDDLPEGLTQRSDGWVQFDVADNGPG 537 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + V L E ++ S L Sbjct: 538 M-SAQTRRHLFDPFFTTKPLGKGSGLGLAVVFGLVEEMGGQIDVASQLGQGAKFSIFLP 595 >gi|83942440|ref|ZP_00954901.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter sp. EE-36] gi|83846533|gb|EAP84409.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter sp. EE-36] Length = 347 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 14/241 (5%), Positives = 56/241 (23%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++I ++ + + + H++ +P+ A+ +E L + D + ++ + Sbjct: 103 QDITQVTNASQMRRDFVANVSHELRTPLTAMMGFIETLRGPARDDAPARDRFLGIMTGEA 162 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWT 105 + + + + + Sbjct: 163 ERMNRLVGDLLSLSRVESDERVRPTDKVDLRYVLQSTMRNLNPLAVEANVTLVATMGDDP 222 Query: 106 GEKIDLSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + ++ NL +++ +G Sbjct: 223 LPLMGDTDQLLQVFTNLIENGIKYGGVGKEVEISVETTLRDPSLRGPAVRVTIRDHGPGI 282 Query: 159 RFPEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + V + + ++ RL + +L Sbjct: 283 DPVHLPRLTERFYRADSHRSRALGGTGLGLAIVKHILNRHRGRLKITSDLGDGARFTVIL 342 Query: 214 E 214 Sbjct: 343 P 343 >gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 556 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 AK N L + + H+I +P+ AI ELL + + ++++ +S Sbjct: 179 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAANTEEEKQKYLEILHTNSE 236 Query: 59 SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105 + + VD + L D+EQ+ I + VQ+ Sbjct: 237 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQLFRMKIGSNSPVQIITEPGLSS 296 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A G +N F + G+ + Sbjct: 297 CMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS-ENGLRFYVSDTGSGISADKLEG 355 Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++S + + + + ++ + E L Sbjct: 356 VFDRFVRLQSDKNGNGLGLSICKTIVNKLGGEIGAESEVGKGSTFWFTLP 405 >gi|320115126|ref|YP_004185285.1| ATP-binding region ATPase domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319928217|gb|ADV78902.1| ATP-binding region ATPase domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 461 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + S I H++ +P+ +H+ +E + + E ++ + + I +K + Sbjct: 242 LRKQMTSDIAHELRTPLTTLHSHIEAMLDGVWEPTYERLKSLNEEVLRLINIVKDLETLN 301 Query: 72 GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + + + + + + A++ + Sbjct: 302 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 362 NLISNSNKYTPVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 421 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ E + + Sbjct: 422 TGGSGIGLSIAKAIVLAHGGKINVESEINKGSKFIVKIP 460 >gi|288940381|ref|YP_003442621.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288895753|gb|ADC61589.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 847 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM--------QLIRLSSMSAIIRLK 65 + + + H++ P+ AI N L + E + + +S Sbjct: 612 VATGMAHELNQPLSAIVNYANGCVRRLQGGQGQPEELVGAMNQITAQAKRASEIIKRLRA 671 Query: 66 FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + D + + + + V +++ + E I + + ++ L Sbjct: 672 LVGKQPPARAEADLNHLVREVCSFLEFETSRVGVAIELELSAEAIPVCVDLVQVEQVLLN 731 Query: 125 ---VAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 A +L + ++ + ++ +G PE ++ D V + Sbjct: 732 LVGNALDALEERPESERRLRICTELEDDWAQVAVADSGPGI-EPEHLKRLFDPFVTTKEG 790 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ R+ E + H L Sbjct: 791 GMGMGLAISQTIVENHEGRIWAESVLGHGSTFHLRLP 827 >gi|227819483|ref|YP_002823454.1| sensory kinase [Sinorhizobium fredii NGR234] gi|227338482|gb|ACP22701.1| sensory kinase in two-component regulatory system with KdpD, regulates kdp operon [Sinorhizobium fredii NGR234] Length = 901 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 51/232 (21%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57 + L + L + I HD+ +P+ AI S L + +++ + S Sbjct: 658 RARLAAEADRLRSALLTSISHDLKTPLAAIMGSAGTLRDYSGAMPEEDRTDLLSTVVDES 717 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 + + + ++ ID + Sbjct: 718 ERLNRFIANLLDMTRIESGATEPNASLHDVGDVVGTALRRAAKMLARHKTAIDAPGDLPM 777 Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL A P G V I N + G + Sbjct: 778 LKLDPVLFEQVLFNLLDNAAKYAPPGSTVRIRAWVDDNSVALQVMDEGPGIPSGDLERVF 837 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 D + + D V + + Sbjct: 838 DSFYRVRKGDHVRAGTGLGLSICRGFIEAMGGTIAAGNRTDRSGAVFTITMP 889 >gi|222148810|ref|YP_002549767.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735796|gb|ACM36759.1| two component sensor kinase [Agrobacterium vitis S4] Length = 872 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60 + M+ V L I HD + + AI S + LL + L+ + + Sbjct: 468 ETQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDSSFADLMEIKRNAN 527 Query: 61 II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKID 110 L F R ++ +GD+ +++ Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRLISGTNVKLHVDYGRDLWPVKA 587 Query: 111 LSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155 + ++L+NL + A ++P+GG ++ + + G Sbjct: 588 DLSQFEQVLINLCVNARDAMPQGGNITISTRNVTGVEAAAYNHRGLPHEDFVLIEVADRG 647 Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I + + + V + ++ + E L Sbjct: 648 TGI-APEILDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIYLESEVGEGTTFRIFL 706 Query: 214 EK 215 + Sbjct: 707 PR 708 >gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus parasuis SH0165] gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus parasuis SH0165] Length = 744 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + L + I H++ +P+ I +L E + + + ++ ++SA+ Sbjct: 242 STLMATISHELRTPLNGIIGLSRILLEGELSAQQREYLKTINISAVSLGHIFSDIIDLEK 301 Query: 76 SV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKIL 119 + + ++ + + +Q + ++IL Sbjct: 302 IDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQIL 361 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSL-KINGNLARFPEKFTQIVDGNVES---- 174 NL A P GG++++ V+ +++ + K +G + E+ Sbjct: 362 WNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQG 421 Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L E + V + +++ Sbjct: 422 KKAQGSGIGLAISKRIARLMGGDLTVESELNQGSVFTLIIQ 462 >gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis 29755] gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis 29755] Length = 744 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + L + I H++ +P+ I +L E + + + ++ ++SA+ Sbjct: 242 STLMATISHELRTPLNGIIGLSRILLEGELSAQQREYLKTINISAVSLGHIFSDIIDLEK 301 Query: 76 SV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKIL 119 + + ++ + + +Q + ++IL Sbjct: 302 IDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQIL 361 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSL-KINGNLARFPEKFTQIVDGNVES---- 174 NL A P GG++++ V+ +++ + K +G + E+ Sbjct: 362 WNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQG 421 Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L E + V + +++ Sbjct: 422 KKAQGSGIGLAISKRIARLMGGDLTVESELNQGSVFTLIIQ 462 >gi|167036702|ref|YP_001664280.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166855536|gb|ABY93944.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 451 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L + S I H++ +P+ +H+ +E + + E ++ + + I +K + Sbjct: 232 LRKQMTSDIAHELRTPLTTLHSHIEAMLDGVWEPTYERLKSLNEEVLRLINIVKDLETLN 291 Query: 72 GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + + + + + + + A++ + Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175 NL ++ P GGK+ I + +F ++ NG + F + G Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 411 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ E + + Sbjct: 412 TGGSGIGLSIAKAIVLAHGGKINVESEINKGSKFIVKIP 450 >gi|117924054|ref|YP_864671.1| PAS/PAC sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] gi|117607810|gb|ABK43265.1| PAS/PAC sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] Length = 756 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 31/227 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---------SSMSAIIRLKFMR 68 + RI H+I +P+ I + + ++ E+ + + Sbjct: 507 VARRIAHEIKNPLTPIQLWAQRMRRRYLKPELADVTDWKVLDEGTQSIIQQVDELKVLVD 566 Query: 69 LAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + + + D D ++V +RA+I + Sbjct: 567 EFSTFARLPRPDMKKDFLSDTLHEVLTLHDAEFKDLSIEVHLDESIPPFPFDRAQIKQVV 626 Query: 123 FM---VAHASLPRGGKVTI------------SVQDSKNENIFSLKINGNLARFPEKFTQI 167 A A++ I V ++ ++ NG + ++ Sbjct: 627 TNLLTNAVAAMEDDRAQEISAAPSDTLVIRACVAENGRGVYVQVEDNGPGIPVGSR-DRV 685 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ RL + + ++ +L Sbjct: 686 FEPYFTTKQKGTGLGLAIVKKIIEDHGGRLWVKEAPNGGTLMEFMLP 732 >gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] Length = 829 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 58/226 (25%), Gaps = 21/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK 65 + + + I H++ +P+ +I EL + + Q I + + + Sbjct: 591 EASRTKSEFVANISHELRTPLQSILGFSELGMVRARQYEKYAAMFQDIHAAGQRMLGLVN 650 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSW---TGEKIDLSR 113 + +V + + + + +++ S Sbjct: 651 DLLDISKIESTVGAFRFARNDVRDLLEDVAAELQMLLERKGLTLRLDLGRVPLVSKVDST 710 Query: 114 ERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 A++ N+ A P G + ++ + ++ +G E Sbjct: 711 RFAQVARNVLSNAVKFSPEGGTIEMSASTPDESTILVQVRDHGPGIPPAELEAVFDAFVQ 770 Query: 173 EST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + D + +L Sbjct: 771 SSKTRDESGGTGLGLAICRKIVTAHGGHIHATNAPDGGTIFHIVLP 816 >gi|313906135|ref|ZP_07839484.1| integral membrane sensor signal transduction histidine kinase [Eubacterium cellulosolvens 6] gi|313469022|gb|EFR64375.1| integral membrane sensor signal transduction histidine kinase [Eubacterium cellulosolvens 6] Length = 367 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 72/238 (30%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + ++ +SS L S I HD+ +P+ I E + + + + ++ I Sbjct: 118 LKESAEEKISSDSKSKELISNISHDLKTPVTTIKGYAEGIIDGVAATPEKQKKYIRTIYN 177 Query: 56 SSMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + ++ I ++ + Sbjct: 178 KAVEIERLIDELTTYSKIEANRIPYNFQKIHVRDYFIDCVDELNLELESQNIQLNYFNYL 237 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 + I + +++ N+ + + + + +D ++ NG Sbjct: 238 TGEPMIIADPEQMRRVINNIVGNSVKYMDKPAGIINIRLRDVDEFIQIEIEDNGKGISQK 297 Query: 162 EK---FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + T I V + +++ ++ + V+ +L K Sbjct: 298 DISRVFDRFYRSDTARTSRGGSGIGLSIVKKIVEDHEGKVWATSREGVGTVIYFVLRK 355 >gi|229551747|ref|ZP_04440472.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1] gi|258539146|ref|YP_003173645.1| two component sensor transduction histidine kinase [Lactobacillus rhamnosus Lc 705] gi|229314878|gb|EEN80851.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1] gi|257150822|emb|CAR89794.1| Two component sensor transduction histidine kinase [Lactobacillus rhamnosus Lc 705] Length = 555 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 21/225 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + H++ +P+ AI E L ++ D+ +++I S + Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLI 383 Query: 65 KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + V ++ + + R+ Sbjct: 384 NDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKL 443 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I+ NL A G VTI+ Q + ++ G E +I + Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETE-QARIFERFYRVD 502 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L ++ + L Sbjct: 503 KARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547 >gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 765 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 23/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ I ++L + + + + S I + + + Sbjct: 534 ANVSHELRTPLNPIIGFSDILVSGVAGELNEKQKKYALNIKQNGSKLLTIVNRIIDMCNI 593 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +D + ++I + + + E ++ ++ K L+ Sbjct: 594 RISKLDLKCDCFKVIEMIIETKDLLNSIALKKKILLDLHIDPELNEIVADKTKTREILYN 653 Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NVESTI 176 A P GG V+I + S+ G + + Sbjct: 654 LIENAIKFTPSGGHVSIHAIQKDDYVQISVTDTGIGIAHSDIGIIFRPFLQVDSSTTRQY 713 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + + + L Sbjct: 714 DGVGLGLMLVKEYVKLQGGDIWVDSELGKGSTFTFTLP 751 >gi|72161733|ref|YP_289390.1| sensor histidine kinase [Thermobifida fusca YX] gi|71915465|gb|AAZ55367.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Thermobifida fusca YX] Length = 475 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 62/209 (29%), Gaps = 18/209 (8%) Query: 23 CHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 H++ +PI + LEL+ D+ EV++L+ ++ + + + Sbjct: 256 SHELRTPITIVRGHLELMGDDPDERREVVRLVTDELDRMARIVEDLLVLAQAQRPDFLRV 315 Query: 82 GLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 + ++ D D R+ G + + ++ L A G Sbjct: 316 EDVSLAELTSDIDAKVRALGDRDWRLDEIGEGIIRVDPQRITQAMVQLASNAVRHSSSGD 375 Query: 135 KVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYY 185 + + + ++ G PE +I + + + Sbjct: 376 TIVLGSSLTDDGGRRTVRLWVRDFGPGI-APEDQERIFERFARAGSPRAHRPGAGLGLAI 434 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V +A ++ + + + +L Sbjct: 435 VRAIAEAHRGTVHLDSALGRGSTFTLILP 463 >gi|46578526|ref|YP_009334.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|46447937|gb|AAS94593.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] Length = 410 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 62/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + ++ + L L + + H + +P+ ++ L L+ ++ + + + + Sbjct: 169 LEESHETLRQTEKLALVGKLAAGVAHSVRNPLTSVKLRLFSLERSLTLDTQQREDFEVIA 228 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109 + ++ + + + + +VQ+ Sbjct: 229 DEIRHLDAIVSNFLEFSRRPKLRMQTVSPSDVVDNTLQLLKHRIESFNVQVQLHRAERLP 288 Query: 110 DLSRERAKILLNLFM---VAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++ L A ++ + + + + +G Sbjct: 289 VVKGDPEQLKEALVNLVLNACEAMGYDGRLDITEERGIINPLGRAVVIRIADSGPGVPI- 347 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + + E+ L A+L Sbjct: 348 DRRDDIFQPFFSTKEEGTGLGLPIAKSIFEEHGGWLHLHSAPGRGATFVAVLP 400 >gi|42527475|ref|NP_972573.1| sensory box histidine kinase [Treponema denticola ATCC 35405] gi|41818060|gb|AAS12484.1| sensory box histidine kinase [Treponema denticola ATCC 35405] Length = 415 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 72/222 (32%), Gaps = 20/222 (9%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIR 63 +L +L + + + H+I +P+ AI L+LL + + I + Sbjct: 171 ENLASLTNVAAAVAHEIKNPLAAISIHLQLLKKNFTACNLSINQKAQKHIGVIEEEIERL 230 Query: 64 LKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 K + + + ++F + +S++ E + + Sbjct: 231 NKIVVDFLFAVRPLKFEFVPVDINALLKNLYDTFFDEFNDSGIAISLSFSKELPKIQGDE 290 Query: 116 A---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + +N+ A +++P GG + IS + + I ++ +G PE +I + Sbjct: 291 RFLRQAFMNVLTNAKSAMPNGGFLDISTKAVNDFIIVTISDSGQGI-LPEDMHKIFEPYF 349 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + E+ + L Sbjct: 350 TTKHDGTGLGLTMTYKVIKEHGGDINVYSDYGMGTSFKFSLP 391 >gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] Length = 576 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 21/236 (8%), Positives = 70/236 (29%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS 56 + +L + + + H+I +P+ ++ L++L + + + + + S Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTLSDEQFDALNQMECS 259 Query: 57 SMSAIIRL-------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + I ++ + Q+S Sbjct: 260 AELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVAITKNLSFNFDCQIS 319 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + S ++IL NL A G +++ S+ G ++ Sbjct: 320 SDKQYWIDSTRLSQILFNLIGNAIKFTDSGSVSVSVAEENDEVV-VSISDTGIGISRAKQ 378 Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D ++ + L + + + ++ + + Sbjct: 379 AHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434 >gi|115523269|ref|YP_780180.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517216|gb|ABJ05200.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 463 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 31/259 (11%), Positives = 71/259 (27%), Gaps = 46/259 (17%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISP---------------------IGAIHNSL 37 + + + + +L L + + H++ +P + AIH Sbjct: 204 LQRAQRQLIEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLERYRQRMSSYLAAIHGGA 263 Query: 38 E---------------LLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 E LL++ + D ++ S + G SVD Sbjct: 264 EPDEIAALRRELRIDALLEDYGSLIDGTLEGAMRVSDVVKNLRRLTFPKPGEAESVDVER 323 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMVAHASLPR--GGKVT 137 ++ I + +I++NL A ++ + Sbjct: 324 VARTAALWASRAKPGRVQLSFDIEPELWVIGNEGQFHQIMVNLIDNAIDAVRGAAEPMIA 383 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195 I+ + E S+ NG +I + + + + + +A E+ Sbjct: 384 ITARQRDGEIAISIADNGTGLSDG-LIDKIFEPFFTTKPVGEGTGLGLWISYGIAREHGG 442 Query: 196 RLLPEIIDDHNVVLSALLE 214 L + + + L Sbjct: 443 TLAAMNRPEGGALFTLTLP 461 >gi|326938133|gb|AEA14029.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 408 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 243 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHIQVDGNLPAINGD 303 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G +K +I Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENDKLEKIGKA 362 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 406 >gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] Length = 950 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 67/240 (27%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + + L+ Sbjct: 453 MEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGIDSLVTAM 512 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + + + + Sbjct: 513 NNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLTLYCFI 572 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + ++ F ++ G Sbjct: 573 EHDVPQVLDGDPLRLQQVISNLLNNAIKFT-HTGCIILHAWVAEGYLAFRVRDTGVGIPA 631 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 632 KELP-RLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQFIVRIP 690 >gi|307151996|ref|YP_003887380.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982224|gb|ADN14105.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 538 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 65/217 (29%), Gaps = 19/217 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLA- 70 L S + H++ +P+ + L+ L + E +++ + I L+ + Sbjct: 318 QLLSDVSHELRTPLTIVSGYLQSALRRGNNLTATQREALEIALSEADRTIQLLQDLLDLA 377 Query: 71 -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 + ++ E + + D+++ + I + + ++L NL Sbjct: 378 RADSGRMHFHLEPIILNDWLKEVMEKTQKYADRQIDFVIPCDPITIQADPVRLRQVLYNL 437 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTID 177 +T+ ++ ++ I + G P+ F + + + Sbjct: 438 IDNGVKYSDAQTPITVKLEAQQHSCILQVCDRGIGISLPDQARIFERFYRADEARSRSTG 497 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + S L Sbjct: 498 GTGLGLAIVKTLVEGMDGHISLSSQPGQGSIFSITLP 534 >gi|302038751|ref|YP_003799073.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606815|emb|CBK43148.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 924 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61 + L AL L + I H++ +P+ I N+ L+ + G + + + L Sbjct: 665 ESQRSQAEKLAALGHLAADIAHEVNNPLAGITNAFHLVKQGIGSDHRHYRFVELIDREIE 724 Query: 62 IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 ++ + V + + + V+ Sbjct: 725 RLAIIVKKMYSLYQGVPATERQATNIDELLQDVATLVGHKLTSKRLRLRTDVVTRRQVVD 784 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++LLNL A + P +V +SV + + +S+ G + +I + Sbjct: 785 APRSDLFQVLLNLVQNAIDASPADSEVGLSVAERDGQLRWSVTDRGTGI-ATDILPRIFE 843 Query: 170 GNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LEK 215 + + L + R+ E +H + + LE+ Sbjct: 844 PFFTTKSGAGWQGLGLGLSVSRGLVYAMGGRIEVETQPEHGSTFTVVHPLER 895 >gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 1104 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 70/242 (28%), Gaps = 28/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 ++K + S + H++ +PI +I EL+ + E M I Sbjct: 858 LSKTNEELRELDKMKDEFISNLSHELRTPITSIKGFSELIYNEKLGTLNEKQKEGMDSIV 917 Query: 55 LSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVS 103 S ++ + VD + + + V Sbjct: 918 KSCDRLRWLIESLLYVNKLQTEKIQYKFEPVDVETLIDGVVSNLSLQIKEKEISIEKYVD 977 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNL 157 ++ ++ ++L++L A GGK+ I + N +K NG Sbjct: 978 ENLPYVNGDKDYLRQVLVHLMDNARKFTSSGGKIQIHAFNDADKSMDNFVHIIVKDNGIG 1037 Query: 158 ARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + +DG++ + + Y + + + + ++ + Sbjct: 1038 IKKESIPDIFKLFYQIDGSMTRKYEGTGLGMYLCNKIIETHNGYIWVDSEENAGTDVHVK 1097 Query: 213 LE 214 L Sbjct: 1098 LP 1099 >gi|288958053|ref|YP_003448394.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910361|dbj|BAI71850.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 843 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/247 (9%), Positives = 64/247 (25%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQ 51 M + S + A+ L + HD + + A+ +LL + Sbjct: 452 MTERKSLEAQFAQSQKMQAVGQLAGGVAHDFNNLLTAMIGFCDLLLLRHKPGDQSFSDIM 511 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108 I+ ++ A ++ + +I + D+ + + + + Sbjct: 512 QIKQNANRAANLVRQLLAFSRQQTLQPRVINVTDVLAELANLLRRLIGENIELKMIHGRE 571 Query: 109 ----IDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIF 149 + ++++NL + A ++ + Sbjct: 572 LGLVKVDQNQLEQVIINLVVNARDAMAGGGKLTINTTNHVVSEPERREHETVPPGGYVSI 631 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 + G E +I + + + V + + +L + Sbjct: 632 DVIDTGCGI-ARENLQRIFEPFYTTKEVGSGTGLGLSTVYGIVRQTGGFVLVDSAVGEGT 690 Query: 208 VLSALLE 214 + LL Sbjct: 691 TFTILLP 697 >gi|196231120|ref|ZP_03129980.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224950|gb|EDY19460.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 892 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 27/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + MD + L + HD + + I + L ++Q I ++ Sbjct: 505 EEQYRQSQKMDAIGQLAGGVAHDFNNLLMVIQGNASLALMAELPPEEVHAILQDIVTATE 564 Query: 59 SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + R ++ + + ++ I D +Q T + + Sbjct: 565 RAAALTSQLLAFSRRQPMQPRDLEMNTIVTEASRMFGRLIGEDITLQTELTPSPTPVHAD 624 Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLKINGN 156 ++LLNL + A ++P GG++T+ + D + + NG Sbjct: 625 SGMIEQVLLNLAVNARDAMPHGGQLTLRTRVVPPQDLPGKLAARVDGEEFVQVDVSDNGQ 684 Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A ++ L E + H S L + Sbjct: 685 GIAADCLPHIFEPFFTTKEVGKGTGLGLATAFGIAQQHGGWLTVESMVGHGSTFSLFLPR 744 >gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 594 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 62/225 (27%), Gaps = 21/225 (9%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 S L L + + H++ +P+ I+ +E+L + +Q I SA + + Sbjct: 260 SNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALQLQAIDAIDRSARSLTRMVGDI 319 Query: 71 -----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRER 115 VD + D + + V + + Sbjct: 320 LDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERL 379 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++L NL A P GG VT+++ + + G Sbjct: 380 RQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADD 439 Query: 176 ID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + V +A + ++ E + + L Sbjct: 440 SPASPRRGLGLGLSIVRHIAQLHGGQVRVESAGRNRGATFTVTLP 484 >gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium SS3/4] Length = 468 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + L S + + + H++ +P+ AI EL++ + + +A Sbjct: 210 RQQHEDILKSSQVRQEFTANVSHELKTPLTAISGYAELIEHGMSGENTERFASEIHKNAA 269 Query: 62 IRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 L + + D + E V + K+ Sbjct: 270 RLLTLINDIIQLSQLDGGKKDVEYRDLDLFPLARECVDMLQMNAQKQNVTIRVQGGEAPV 329 Query: 113 RERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165 +++ NL A + G VT++ S+K G F Sbjct: 330 FADKQLMEELIYNLCDNAIRYNKKDGTVTVTTGIENGHTFLSVKDTGIGISAEHQERVFE 389 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + + V + ++ +L E + Sbjct: 390 RFYRVDKSRSKATGGTGLGLAIVKHIVAQHGAKLTLESEQGKGTEIRV 437 >gi|222086167|ref|YP_002544699.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221723615|gb|ACM26771.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 871 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 65/242 (26%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60 + M+ V L I HD + + AI S + LL + L+ + + Sbjct: 469 ETQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLMEIKRNAN 528 Query: 61 II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKID 110 L F R ++ +GD+ ++E Sbjct: 529 RAAVLVRQLLAFSRKQTMRPTILNLTDVIGDLRMLVERLLSGTHVKLDVDYGRDLWPVKT 588 Query: 111 LSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKING 155 + ++L+NL + A ++ + + + + G Sbjct: 589 DLSQFEQVLINLCVNARDAMPGGGTLTLRTRNLPVMDVAAFNYAYLPHEEMVLVEVNDTG 648 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I + + + V + ++ + PE L Sbjct: 649 TGI-APEIMDKIFEPFFTTKEVGKGTGLGLAMVYGIIKQSGGYIHPESEVGKGTTFRIFL 707 Query: 214 EK 215 + Sbjct: 708 PR 709 >gi|167767347|ref|ZP_02439400.1| hypothetical protein CLOSS21_01866 [Clostridium sp. SS2/1] gi|167711322|gb|EDS21901.1| hypothetical protein CLOSS21_01866 [Clostridium sp. SS2/1] Length = 451 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 69/234 (29%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + + + H++ +P+ I + E L E + +E + + + Sbjct: 220 MFERLEESFEKEQ---QFTADVSHELRTPVTVIISQCEYLIEDPVLEEEEKEEIMIILRQ 276 Query: 61 IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 R+ + + + + + + + V Sbjct: 277 ARRMSKLINEMLMIARGEMSESYDMEEVDLILLTEVIVEELREQAEKKKIQISVFSDRDV 336 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 + + ++++NL A + G + I ++ + I +K +G + Sbjct: 337 KMMGNHTLLLRMMMNLVQNAISYGKEHGHIDILWKEQGDMIIGEVKDDGIGIDQEDIPKI 396 Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + V + + ++ E + K Sbjct: 397 WDRFYRVDKSRSRENGGTGLGLSMVHFIVAVHGGQIHVESKNGEGTSFIFQFPK 450 >gi|167762401|ref|ZP_02434528.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC 43183] gi|167699507|gb|EDS16086.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC 43183] Length = 923 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIR 54 M + ++ L + I H+I +PI I + ++LL G + + + Sbjct: 387 MREKQYIEEMNQSKLR--FFTNISHEIRTPITLIISQVDLLLNSGKLSTYAYSKLLNIHK 444 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTG 106 + + + + G + I D+ ++++ + + Sbjct: 445 NAGNLKSLISELLDFRKQEQGLLKLKISQFDLCDLLQEHFVLFKELSANRNISFSLHMNV 504 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + +R ++ + A GG + + + FS+ NG + Sbjct: 505 QHCMIWGDRMQLQKVINNLLSNAFKYTSDGGTIVLGFTEKDMVCRFSVTDNGAGISEEDY 564 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + I + +K + + L+K Sbjct: 565 QKIFERFYQVENIGLYGGTGIGLALTQGIVKAHKGEINVKSQLGKGSCFQVTLKK 619 >gi|218780125|ref|YP_002431443.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761509|gb|ACL03975.1| PAS/PAC sensor signal transduction histidine kinase, HupT [Desulfatibacillum alkenivorans AK-01] Length = 558 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 67/244 (27%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRL 55 M + + + + + + + H++ P+ AI L+++ E + + +L + Sbjct: 308 MLEKDALLIQAGKMTILGEMSAGVAHELNQPLNAIRVGNEFLKVMAEKDRQIPLDELKLV 367 Query: 56 SSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW 104 + F R A VD + + + + + V + Sbjct: 368 ADEVTAQVDRAAAIINRLKAFGRKAECEKEPVDINVPVNGVLGMIGSQLALENITVTLEL 427 Query: 105 TGEKID---LSRERAKILLNLFMVAHASLPRGGKVTISVQ---------DSKNENIFSLK 152 ++L NL A ++ ++S + + Sbjct: 428 EKNLPPVIAHENRMEQVLFNLITNARDAIGDKRDCSMSPYVGNINIRSYRDGDMVAVEIT 487 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G + +I + + + + + + R+ + + V + Sbjct: 488 DTGVGM-SQDVQERIFEPFFTTKEVGKGMGLGLSIIYGIIRDYGGRIEVQSKEGAGSVFT 546 Query: 211 ALLE 214 Sbjct: 547 FFFP 550 >gi|86160633|ref|YP_467418.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777144|gb|ABC83981.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 686 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 67/249 (26%), Gaps = 37/249 (14%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43 K + L+ + +V++ L + + H++ +P+ + +L +DE Sbjct: 292 RKQLHARLALADRMVSVGTLAAGVAHELNNPLAYVVANLSYVDEQLTVLAPRLATARSPR 351 Query: 44 ---------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 + + F R G V L V + I Sbjct: 352 EPDLANALLDAVHDARDGAERMRVIVRDLKTFSRPDEDRAGPVSLPPLLDSCVSVAWNEI 411 Query: 95 AVDKRVQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNEN 147 R+ ++ LNL + A ++P G ++ + + Sbjct: 412 RHRARLVRDVADVPPVQGCEARLGQVFLNLLVNAAQAIPDGHADEHQIRVSARALTGDRV 471 Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH 205 + +G+ PE +I D + + + + E Sbjct: 472 AVEVADSGSGI-APEHLPRIFDPFFTTKPPGVGTGLGLSICQSIVSAMGGEIQVESALGR 530 Query: 206 NVVLSALLE 214 +L Sbjct: 531 GTAFRVILP 539 >gi|89894513|ref|YP_518000.1| hypothetical protein DSY1767 [Desulfitobacterium hafniense Y51] gi|89333961|dbj|BAE83556.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 481 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 72/238 (30%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + ++ L D +L S I HD+ +P+ +I +E LLD + E + + Sbjct: 241 LKNSVHTQLKYEDNRKMLISSISHDLKTPVTSIKGYVEGLLDGIANSPEKKEKYLKTIYR 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110 ++ M +D E+ D ++ E+ Sbjct: 301 KAEQVDTMIDDLLLYAKLDLNQIPFSFEKTNIGEFLDDGLQEIEPEMERNGIKILFESEL 360 Query: 111 --------LSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 +++LN+ + + + V +++ + I +K NG Sbjct: 361 TSAQEIPLDRERMMRVILNIIDNSRKYMDKEEGVITLSLRETHSSVIIEIKDNGRGIPKK 420 Query: 162 E---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I + + ++ R+ + + L + Sbjct: 421 DVAQIFERFYRSDTARTEIKGSGLGLAIAKQIVEGHEGRIWAVSREGKGTSVLISLPR 478 >gi|219668944|ref|YP_002459379.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219539204|gb|ACL20943.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 479 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 72/238 (30%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + ++ L D +L S I HD+ +P+ +I +E LLD + E + + Sbjct: 241 LKNSVHTQLKYEDNRKMLISSISHDLKTPVTSIKGYVEGLLDGIANSPEKKEKYLKTIYR 300 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110 ++ M +D E+ D ++ E+ Sbjct: 301 KAEQVDTMIDDLLLYAKLDLNQIPFSFEKTNIGEFLDDGLQEIEPEMERNGIKILFESEL 360 Query: 111 --------LSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 +++LN+ + + + V +++ + I +K NG Sbjct: 361 TSAQEIPLDRERMMRVILNIIDNSRKYMDKEEGVITLSLRETHSSVIIEIKDNGRGIPKK 420 Query: 162 E---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I + + ++ R+ + + L + Sbjct: 421 DVAQIFERFYRSDTARTEIKGSGLGLAIAKQIVEGHEGRIWAVSREGKGTSVLISLPR 478 >gi|260771991|ref|ZP_05880908.1| osmolarity sensory histidine kinase EnvZ [Vibrio metschnikovii CIP 69.14] gi|260612858|gb|EEX38060.1| osmolarity sensory histidine kinase EnvZ [Vibrio metschnikovii CIP 69.14] Length = 433 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 7/218 (3%) Query: 4 NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60 + + +++ ALL + I HD+ +P+ I + E++ + + + ++ + Sbjct: 214 QMSQGIQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPQDSYLAEGIISDTEECNEII 273 Query: 61 IIRLKFMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + +++ T VD GDI + + + + + Sbjct: 274 SQFMDYLKPVDKQTFQAVDLNEIGGDIASSEGGYELHIETDFQASIEPVFGNPIAIKRAV 333 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176 NL + A K++ V K ++ NG + F + G+ Sbjct: 334 SNLVVNALRYGNGWVKISTGVTADKRMAWVCVEDNGPGIDPSQVQKVFEPFIRGDTARGS 393 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ ++ + + + Sbjct: 394 EGTGLGLAIVKRIVGQHHGAVVLNNRSEGGLKIQLSFP 431 >gi|229096049|ref|ZP_04227024.1| hypothetical protein bcere0020_12980 [Bacillus cereus Rock3-29] gi|229115004|ref|ZP_04244416.1| hypothetical protein bcere0017_13000 [Bacillus cereus Rock1-3] gi|228668516|gb|EEL23946.1| hypothetical protein bcere0017_13000 [Bacillus cereus Rock1-3] gi|228687434|gb|EEL41337.1| hypothetical protein bcere0020_12980 [Bacillus cereus Rock3-29] Length = 423 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKHLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + I L + Q + + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINIFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQ-AGTTFTISIP 409 >gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 1032 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+ + L + + + H+I +P+ + LL + + + + + S Sbjct: 389 MAEKAIL---AERLKSEFLANMSHEIRTPMNGVIGMTHLLQDTELNETQQEYVETMLNST 445 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104 L + + + + ++ + D A + + Sbjct: 446 ESLLVLINDILDLSKIEAGKMTIEQMDVDVMDLQAQVSSLFASNAQAKGVELVSVYPLDC 505 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A +G ++ F + G Sbjct: 506 YKTFVTDPYRLKQVLANLLSNAIKFTEKGDVTLRIEIEEPREDGARIRFEVVDTGIGIAP 565 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L RL E + LE Sbjct: 566 EVVDTLFKSFSQADASTTRRFGGTGLGLAISQRLVQYLGGRLQVESELGVGTTFTFALE 624 >gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 7894] Length = 927 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 +IL NL A RG + + + Sbjct: 544 LSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663 Query: 208 VLSALLE 214 ++ L Sbjct: 664 TVTVALP 670 >gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1056 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 31/242 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60 AK + + L + + H++ +P+ +I + L E+ Q ++ + Sbjct: 808 AKEKAESADRLKSAFL--ATMSHELRTPLNSIIGFSSIVLQELPGPLNKEQKKQMGMVRN 865 Query: 61 IIRLKFMRLAF-----------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 R + + + + + + E + Q + Sbjct: 866 SARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLAEKKGLELELKQDA 925 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNL 157 R ++L+NL A +G + + + ++ G Sbjct: 926 SKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGVDMVMIQIQDTGIG 985 Query: 158 ARFPE-----KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + K + ++ ++ + + L + E H + Sbjct: 986 IQPGDFSKLFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITVESEIGHGSRFTVR 1045 Query: 213 LE 214 L Sbjct: 1046 LP 1047 >gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1013 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 28/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 AK ++ + + + H+I +P+ + +LL ++ DE +Q+IR S Sbjct: 482 AKETAEAANAAK--SEFLANMSHEIRTPLNGLLGFTDLLLRGAANDPQKRDEYLQIIRTS 539 Query: 57 SMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + +V + + + E + + Sbjct: 540 GRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKALRLTCDWSGE 599 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPE 162 + + S ++L NL A G + + + F ++ G E Sbjct: 600 VPPQIVTDSVRLRQLLTNLIGNAIKFTQFGSVSIDAGWHAPLQQLTFVIRDTGIGI-PEE 658 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 K I D + +A + E + + Sbjct: 659 KLDLIFDPFTQADATTTRRFGGTGLGLAICRRIARLLGGDVSVESEIGAGSTFTVTI 715 >gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 576 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 21/236 (8%), Positives = 70/236 (29%), Gaps = 26/236 (11%) Query: 4 NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS 56 + +L + + + H+I +P+ ++ L++L + + + + + S Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTLSDEQFDALNQMECS 259 Query: 57 SMSAIIRL-------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + + + + I ++ + Q+S Sbjct: 260 AELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVAITKNLSFNFDCQIS 319 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + S ++IL NL A G +++ S+ G ++ Sbjct: 320 SDKQYWIDSTRLSQILFNLIGNAIKFTDSGSVSVSVAEENDEVV-VSISDTGIGISRAKQ 378 Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D ++ + L + + + ++ + + Sbjct: 379 AHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434 >gi|310818754|ref|YP_003951112.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391826|gb|ADO69285.1| sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 443 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 66/238 (27%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQ 51 A+ + + L+ + + + H++ +P+ + +L L+ + V++ Sbjct: 197 AERERAEVERLVLMGQMAAGVAHEVNNPLAFVKANLNFLESKAAGEGLSLDRAELRTVLR 256 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + ++ D L + ++ + +V + Sbjct: 257 ETLEGVSRIQQIVTDLKDFSRAGNLDDKEGGALEDALREAGRLASVRLGAGCQVALELEP 316 Query: 107 EKIDL---SRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158 + R +++LNL + A ++ + + + ++ NG Sbjct: 317 GLPAVRLGQRHVVQVMLNLLLNAVDAVEQAEPPRSPEILVRARRVEQGVALLVEDNGPGI 376 Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + L E + L Sbjct: 377 -PPEVLPRIFEPFFTTKPPGKGTGLGLALCREYIVRAGGTLGAENRPGGGARFTLRLP 433 >gi|306833225|ref|ZP_07466354.1| sensor histidine kinase KdpD [Streptococcus bovis ATCC 700338] gi|304424592|gb|EFM27729.1| sensor histidine kinase KdpD [Streptococcus bovis ATCC 700338] Length = 899 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 + + + L A L I HD+ +P+ +I + L DE + + Sbjct: 659 KEKVAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDSFDEATKKQMYTDIYD 718 Query: 55 LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + VD ++ + + Sbjct: 719 DSMWLINLVENLLAVTRIEENNVNLRIIDDLVDDVVSEALRHVNRKSVEHHIEVKHKDEF 778 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +R ++++N+ A P+G + I + N+ + S+ +G E Sbjct: 779 LIAKMDARLIVQVIINIVDNAIKYTPQGSHILIQTERQGNKAVISISDDGEGM-SDEVKE 837 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + S + + + + + + + L Sbjct: 838 RVFDMFYSGINKVVDSHRSLGLGLALCKSIINAHGGEISVSDNIPQGSIFTFTLP 892 >gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM B1551] gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM B1551] Length = 590 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 23/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +PI + E + + ++ + S + + + LA Sbjct: 372 ANVSHELRTPISMLQGYSEAIIDDIASTDEEKKEIAQVIYDESLRMGRLVNELLDLARME 431 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERAKILLN 121 G V + + + E + + + ++ E + S ++L N Sbjct: 432 AGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKIEDEFEAMIDSDRMEQVLTN 491 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 L A G+V + + S++E S++ G + F + + Sbjct: 492 LIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKEDLPFVFERFYKADKARTRGK 551 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ + E + L K Sbjct: 552 SGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590 >gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] Length = 1407 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 68/217 (31%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67 S + H++ +P+ + +LL + ++ ++ I S+ + + + Sbjct: 1026 SVLSHELRNPLNCLLGWTQLLRKQQLDEAKTNQALEAIERSAKAQHQLIGDLLDISRISV 1085 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123 V + + V++ A + ++Q L ++ +++ NL Sbjct: 1086 GQMRLEAQPVKLIPVIEAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLL 1145 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVESTIDS 178 + P GG++ I++ S + ++ G + D + + Sbjct: 1146 SNSIKFTPVGGRIDITLDYSPFQGEIQVRDTGVGISADFLPYIFDRFRQADRSPTRSNTG 1205 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V L + + + + L Sbjct: 1206 LGLGLSIVRHLVELHGGTVEVTSPGEGQGATFTVRLP 1242 >gi|87199946|ref|YP_497203.1| periplasmic sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87135627|gb|ABD26369.1| periplasmic sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 742 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 61/220 (27%), Gaps = 22/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + RI H+I +P+ I + E L + +L K + Sbjct: 510 VARRIAHEIKNPLTPIQLATERLKRRYGRQIENDPELFEELTSTIIRQVGDLRKMVDEFS 569 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------GEKIDLSRERAKILLNL 122 + + D ++ + + + + + A+++ N+ Sbjct: 570 SFARLPKPVFRAEDASDLVRQSLFLQEVAHTAIDFSFACDAPSMPIQCDRHQFAQVMTNV 629 Query: 123 FMVAHASLPRGGKVTISVQDS-------KNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 A ++ K + + ++ + N P + +I++ + + Sbjct: 630 LKNAVEAIEAKAKTEDVDYRGRIAVTLAGDHDTVTVSVTDNGIGLPAERERILEPYMTTR 689 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + E+ + ++ + Sbjct: 690 EKGTGLGLAIVHKIVEEHGGEMAFTAEPGGGTRVTMRFAR 729 >gi|152170|gb|AAA63510.1| dicarboxylate sensor protein [Sinorhizobium meliloti] Length = 636 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48 + + + L + + + H+I P+ I + + Sbjct: 405 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 464 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107 + +L +F R G + + F +++ + Sbjct: 465 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 524 Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162 + ++L+NL A ++ I V+ ++ NG + Sbjct: 525 GLQALGNRIRLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGIALTVADNGPGI-AAD 583 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ S D + + + + E + L+K Sbjct: 584 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFTVNLKK 635 >gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] Length = 1221 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 66/249 (26%), Gaps = 38/249 (15%) Query: 2 AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +++ +L A L + + H+I +P+ + +++LD+ + ++ L Sbjct: 548 RQDLEQARHEAELANQAKSAFLAA-MSHEIRTPMNGVIGMIDVLDQTSLSTYQREMTDLI 606 Query: 57 SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 SA L+ + + + + V+ + V Sbjct: 607 RESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERACGTLTHMAASKEVELTLFV 666 Query: 103 S--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---------ENIFSL 151 + + +IL+NL A ++ + +F + Sbjct: 667 DPALPEGVLGDALRLRQILINLINNAIKFSSGMSRLGRVAVRASPAEEVDGDVVTVMFQV 726 Query: 152 KINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 NG ++ + L K + E D Sbjct: 727 IDNGIGM-DDAARERLFTPFSQGDASTTRRFGGTGLGLIICRRLVELMKGEISVESKPDV 785 Query: 206 NVVLSALLE 214 V + + Sbjct: 786 GSVFTVRIP 794 >gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 19/229 (8%), Positives = 55/229 (24%), Gaps = 25/229 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66 S + + + H++ +P+ I ++++ + ++ L+ + Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDEEQHKQIKVLLESGDHLLSLLNDI 466 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------------E 114 + + ++ VI+ + + I + Sbjct: 467 LDFSKIEQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIINNNINEKTIFLGDKPR 526 Query: 115 RAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD- 169 +I+ NL A +G + ++ G R Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLNFSHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEPF 586 Query: 170 ----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L K + + + +L Sbjct: 587 IQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635 >gi|193212167|ref|YP_001998120.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085644|gb|ACF10920.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 648 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 66/233 (28%), Gaps = 30/233 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS-------MSAIIR 63 M+LV L I HD + + AI + EL L ++ + IR Sbjct: 271 MELVGQLAGGIAHDFNNALAAIIGNTELVLKKLDPAHPTVSNIRDIHTLATRSADLTRQL 330 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L F R + + + + + + + +++ E I + + ++ L Sbjct: 331 LAFARKQVAMPQVFNLTEAISESLHLHQRLLDDNIQLEWHLCEEPIQVKFDPTQLEQILS 390 Query: 124 M---VAHASLPRGGKVTISVQ----------------DSKNENIFSLKINGNLARFPEKF 164 A ++ G++T+ + S+ NG+ Sbjct: 391 NLLINARDAIEGSGRITVKCGGVRFDPDDGKTGTPGLSPGHYAKLSVTDNGSGIEAT-VL 449 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + V + +N + L + Sbjct: 450 PHIYEPFFTTKEVGKGTGLGLSTVYGIVRQNNGHIECNSEPGKGTTFEIWLPR 502 >gi|169237687|ref|YP_001690890.1| putative signal-transducing histidine kinase [Halobacterium salinarum R1] gi|167728464|emb|CAP15281.1| putative signal-transducing histidine kinase [Halobacterium salinarum R1] Length = 494 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 58/215 (26%), Gaps = 6/215 (2%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + L + + HD+ +P+ I L+LL E + + + Sbjct: 280 EREQALTERNERL-DEFAAIVSHDLRNPLSIIGGYLQLLQEEHDSEHLETMAEAHGRMET 338 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + LA D + R++V + +++ Sbjct: 339 LIEDLLSLARHGDDVDDLNPVQLGALVEACWGNVETANARLRVETDQTVLADENRLKELV 398 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 NL A VT+ F ++ +G+ + ++ G ++ + Sbjct: 399 ENLIRNAIEHGGEDVTVTVGDLSGDEG--FYIEDDGSGIQEADREDVFTSGF-STSTEGT 455 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + + Sbjct: 456 GFGLAIVKRIVDAHGWTVTVTDGSQGGARFEFRVP 490 >gi|167763266|ref|ZP_02435393.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC 43183] gi|167698560|gb|EDS15139.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC 43183] Length = 624 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 18/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + L + + H+I +P+ AI LL ++ + + LI ++ Sbjct: 393 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIIGFSSLLPHIEDAEERNHYISLINHNNE 450 Query: 59 SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + L+ + D + Q K+ + Sbjct: 451 LLLNIINDVLDLSKIEAGHIELSPVWCNLSDLIDESCTECQPNVPEGVTLKKRYPATPNL 510 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL A + + G V IS + + +E S+ G + Sbjct: 511 IKQDPMRIKQVLSNLISNALKNTVQ-GYVEISYETTPSETRISVSDTGRGIPEEKLGIIF 569 Query: 168 VDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + Sbjct: 570 ERFEKTDAFIQGAGLGLPICRSIMEHMNGTIEVTSTVNKGSTFTVVFP 617 >gi|120603892|ref|YP_968292.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|120564121|gb|ABM29865.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|311232452|gb|ADP85306.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 368 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 16/233 (6%), Positives = 62/233 (26%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 + ++ + L L + + H + +P+ ++ L L+ ++ + + + + Sbjct: 127 LEESHETLRQTEKLALVGKLAAGVAHSVRNPLTSVKLRLFSLERSLTLDTQQREDFEVIA 186 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109 + ++ + + + + +VQ+ Sbjct: 187 DEIRHLDAIVSNFLEFSRRPKLRMQTVSPSDVVDNTLQLLKHRIESFNVQVQLHRAERLP 246 Query: 110 DLSRERAKILLNLFM---VAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++ L A ++ + + + + +G Sbjct: 247 VVKGDPEQLKEALVNLVLNACEAMGYDGRLDITEERGIINPLGRAVVIRIADSGPGVPI- 305 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + + E+ L A+L Sbjct: 306 DRRDDIFQPFFSTKEEGTGLGLPIAKSIFEEHGGWLHLHSAPGRGATFVAVLP 358 >gi|148263295|ref|YP_001230001.1| osmosensitive K+ channel signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396795|gb|ABQ25428.1| osmosensitive K+ channel signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 889 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFG 72 ALL S + HD+ +P+ +I +L L + + +L+ + A +F+ Sbjct: 671 ALLNS-VSHDLRTPLVSITGALGTLRDKEHRLSDTRRRELLDAAWEEAGRLNRFVGNLLD 729 Query: 73 YTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRERAKIL 119 T + + D+ + + ++L Sbjct: 730 MTRLEAGAVTLKEEPCDIQDLVGCALAALEQRIGAREVKVQLPDGLPLVKLDMALMTQVL 789 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176 +NL A P + I+ + + G + F + V Sbjct: 790 VNLLDNALKYSPHASIIDIAARVDDGRLTLEVSDRGPGVPESDLKRIFDKFYRIPVPEGA 849 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ E D + + A L Sbjct: 850 GGTGLGLSICKGIVEAHHGKIRAENRDGGGLRVIATLP 887 >gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01] gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01] Length = 1059 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K + + + + + H+I +P+ + E+L + + + S+ Sbjct: 382 EKAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILADTPLTPTQRDYVDTIETSSQ 441 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105 + L + ++ ++ + I + I V+ + Sbjct: 442 LLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTP 501 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161 + +IL+N A G T+ D F+++ G Sbjct: 502 ARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIKTLEQSDDNVTIRFAVRDTGIGIDKQ 561 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L ++ + + LE Sbjct: 562 QQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGEGSCFYFDLE 619 >gi|319408627|emb|CBI82282.1| sensor histidine kinase [Bartonella schoenbuchensis R1] Length = 842 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 63/247 (25%), Gaps = 34/247 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 K + + + + A+ L I HD + + AI S +LL + I+ Sbjct: 449 QKTLEDKMVQNQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSSDPAHADLINIK 508 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107 ++ A ++ + + ++ I + K + Sbjct: 509 NNANRAAALVQQLLAFSRKQTLKPEKVDFTELLSDIRNLILSLLGSNIQLKIIHGRDLWN 568 Query: 108 KIDLSRERAKILLNLFMVAHASLPRG-----------------GKVTISVQDSKNENIFS 150 ++++NL + A ++ + S + Sbjct: 569 VKVDQASFQRVIMNLVINARDAIAMPGGGLITIKTNNITKQQSAEFNYVGFVSGEYVQLT 628 Query: 151 LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + G ++ + + + V + + + + + Sbjct: 629 ISDTGEGI-SAFVQEKMFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGYIYCDSQEGKGTT 687 Query: 209 LSALLEK 215 L + Sbjct: 688 FHIFLPR 694 >gi|319646652|ref|ZP_08000881.1| sensor protein [Bacillus sp. BT1B_CT2] gi|317391240|gb|EFV72038.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 455 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 18/215 (8%), Positives = 55/215 (25%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 S + H++ +PI I ++ + + Q + + A + F T Sbjct: 238 SSVAHELRTPITYIKGYTDVAMRDKLEPQARNQYLSIIKEEADNLNTLVDDLFLLTKLKQ 297 Query: 79 SLIGLGDIEQVIEDFIAVDKR--------------VQVSWTGEKIDLSRERAKILLNLFM 124 + + + F+ + + + ++++ NL Sbjct: 298 PGFQINKKQVHLYTFVKKEIQKAAVAFSEKRISVSFDIPTDLYVTVDEVRFSQVISNLLN 357 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179 A ++ +++ ++ G E F + + Sbjct: 358 NARQYSDPESTAAVTASKLEDQVKITVADEGCGIPEEERDYIFERFYRIDKSRSRQTGGT 417 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + ++ + L Sbjct: 418 GLGLAIVKEIVELHGGQIAAKNRTPKGSEFIITLP 452 >gi|295103286|emb|CBL00830.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii SL3/3] Length = 347 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + E + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDESHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341 >gi|229102160|ref|ZP_04232871.1| hypothetical protein bcere0019_13230 [Bacillus cereus Rock3-28] gi|228681360|gb|EEL35526.1| hypothetical protein bcere0019_13230 [Bacillus cereus Rock3-28] Length = 423 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKHLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L + Q + + + + Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQ-AGTTFTISIP 409 >gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 1001 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 55/246 (22%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K + L + A + + H+I +P+ AI +LEL+ + + + Sbjct: 499 RKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAPTERRRL 558 Query: 54 RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97 + S+ D L DI + Sbjct: 559 DTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELR 618 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKI 153 RV + +I+ NL A RG + + + Sbjct: 619 CRVAPELADGYVGDPVRLRQIMSNLVDNAIKFTERGSVSIDAQRVVRSAGGARVEIRIAD 678 Query: 154 NGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G T + +A L + + Sbjct: 679 TGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVDSREGEGTT 738 Query: 209 LSALLE 214 + L Sbjct: 739 MCVTLP 744 >gi|52079559|ref|YP_078350.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52784923|ref|YP_090752.1| hypothetical protein BLi01151 [Bacillus licheniformis ATCC 14580] gi|52002770|gb|AAU22712.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52347425|gb|AAU40059.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 455 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 18/215 (8%), Positives = 55/215 (25%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 S + H++ +PI I ++ + + Q + + A + F T Sbjct: 238 SSVAHELRTPITYIKGYTDVAMRDKLEPQARNQYLSIIKEEADNLNTLVDDLFLLTKLKQ 297 Query: 79 SLIGLGDIEQVIEDFIAVDKR--------------VQVSWTGEKIDLSRERAKILLNLFM 124 + + + F+ + + + ++++ NL Sbjct: 298 PGFQINKKQVHLYTFVKKEIQKAAVAFSEKRISVSFDIPTDLYVTVDEVRFSQVISNLLN 357 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179 A ++ +++ ++ G E F + + Sbjct: 358 NARQYSDPESTAAVTASKLEDQVKITVADEGCGIPEEERDYIFERFYRIDKSRSRQTGGT 417 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + ++ + L Sbjct: 418 GLGLAIVKEIVELHGGQIAAKNRTPKGSEFIITLP 452 >gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1290 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%) Query: 2 AKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 + + + + + + H++ SP+ I +LL + ++ +++I Sbjct: 907 EQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQALEVIE 966 Query: 55 LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 ++ + + +VD + + V + +Q T Sbjct: 967 RNAKLQARLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAESKSIHIQTELT 1026 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +++ NL A P GG++ +S++ + ++ G Sbjct: 1027 SHVCRVEGDPNRLQQVVWNLLTNAVKFTPEGGQIEVSLERVGSLAHIQVRDTGKGISLDF 1086 Query: 163 ---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 F + + + V L + + + + L Sbjct: 1087 LPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGAVQVTSPGEGLGTTFTVKLP 1144 >gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1347 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 69/240 (28%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + L + + + H++ +P+ +I E L E + + ++ I Sbjct: 835 LHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPLRDQQQKAIRAIE 894 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + + D + + + +Q+ Sbjct: 895 ASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQIHLSIQLD 954 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARF 160 + R +IL+NL A P G + ++ ++ F++ G Sbjct: 955 DPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSDTGIGIAE 1014 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ V + + V L + ++ E + + L Sbjct: 1015 EDLS-RLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVESMPGVGSRFTVTLP 1073 >gi|329922504|ref|ZP_08278108.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328942142|gb|EGG38422.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 460 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 31/243 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQL 52 M + + + S + H++ +P+ AI + L E E+ ++Q Sbjct: 220 MGRQLHDYIQYQK---QFVSNVSHELKTPLAAIRGFSQYLVEGENENKELQKVYAHLLQE 276 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----------------VIEDFIA 95 + L R + ++ + ++ Sbjct: 277 SDRLTRLINELLLLSRFDKAGSNELEVEKTEMNELIQQVATSLGAKAKEKGIEIMFREAE 336 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + ++ + + NL A + + + + +E + ++ G Sbjct: 337 AEPVDKLLTRVHANVNPMLMSHAIANLVDNAIKYSGSPSLIELKLTHTPSEVVIRIRDQG 396 Query: 156 NLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E + ST + + + + E ++ + Sbjct: 397 IGIAGDELERVQERFYRAKNASTANGSGLGLSICKEIVERFNGYIDMESQIGEGTTVTIV 456 Query: 213 LEK 215 L + Sbjct: 457 LPR 459 >gi|319780214|ref|YP_004139690.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166102|gb|ADV09640.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 594 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 77/248 (31%), Gaps = 38/248 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + +++ + + H++ +P+ ++ +++E L +M +I+ Sbjct: 348 MTNALYARIEAIES---FAADVSHELKNPLTSLRSAVETLPLAKNDDSRGRLMDIIQHDV 404 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 + + A G+VD + D+ V + K V++ + Sbjct: 405 RRLDRLITDISDASRLDAELAREDAGTVDLKKFITDLVAVSREATRNKKAVEIEFKAAKL 464 Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLA 158 + +++ NL A + +P G +++S+ + NI ++ NG Sbjct: 465 PQGVKGYVVVGHDLRIGQVITNLIENARSFVPEDHGHISLSLARAGKFNIVTVDDNGPGI 524 Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HN 206 + +I + + + + L E I Sbjct: 525 -RADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGTKPGEIKG 583 Query: 207 VVLSALLE 214 L Sbjct: 584 ARFVVTLP 591 >gi|307318523|ref|ZP_07597957.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306895863|gb|EFN26615.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] Length = 869 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60 +N M+ V L I HD + + AI S + LL + L+ + + Sbjct: 468 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 527 Query: 61 II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R ++ +GD+ +++ + +V+V + + + + Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVKTD 587 Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156 ++LLNL + A ++P GG +T+ ++ ++ + + G Sbjct: 588 LGQFEQVLLNLAVNARDAMPAGGIITLRTRNLPASEVAALGRRELPEEDFVMVEVSDQGT 647 Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + V + ++ + PE LL Sbjct: 648 GI-PPEIMDKIFEPFFTTKDVGKGTGLGLSMVYGIVKQSGGYIYPESEIGSGTTFRILLP 706 Query: 215 K 215 + Sbjct: 707 R 707 >gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 769 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 50/229 (21%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI LL E +E + + + Sbjct: 537 LRDKEKIE-ESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCHSEETREFCEIIETNN 595 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ M + L Q Sbjct: 596 ELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCEIPEQDC 655 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ N A +G + F +K G Sbjct: 656 VIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNLPHV 714 Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + ++ E + + Sbjct: 715 FERFAKFDSFIQGTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763 >gi|326789157|ref|YP_004306978.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] gi|326539921|gb|ADZ81780.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] Length = 395 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIR 54 M I + S + H++ +P+ I ++L+ G ++ + + Sbjct: 164 MMDRIQVYVERQK---QFASDVSHELRTPLAIIQGYADMLERWGKDNPQILEESISSIAE 220 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 ++ + K + L+ ++ I D+ + D + + + Sbjct: 221 ETANMNTLLEKLLFLSRSDKHTLKVDINTIDLSALCNDILRETSFIDDAHQLISKVSPNV 280 Query: 115 RAK--------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-- 164 K ++ L A P GG +T+ + + S+K G Sbjct: 281 MLKGDSALIKELIRILVDNALKYTPEGGSITLGCATTNQNIVLSVKDTGIGIPKEHIHKL 340 Query: 165 -TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A ++ ++ D Sbjct: 341 FERFYRVDEARNKNTGGTGLGLAIAHEIAETHQAKIFVNSDIDEGTEFVIFFP 393 >gi|229125843|ref|ZP_04254868.1| hypothetical protein bcere0015_3070 [Bacillus cereus BDRD-Cer4] gi|228657501|gb|EEL13314.1| hypothetical protein bcere0015_3070 [Bacillus cereus BDRD-Cer4] Length = 402 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 183 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 237 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 238 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 297 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 298 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 356 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 357 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 400 >gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 769 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 50/229 (21%), Gaps = 17/229 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + + H+I +P+ AI LL E +E + + + Sbjct: 537 LRDKEKIE-ESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCHSEETREFCEIIETNN 595 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ M + L Q Sbjct: 596 ELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCEIPEQDC 655 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ N A +G + F +K G Sbjct: 656 VIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNLPHV 714 Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + ++ E + + Sbjct: 715 FERFAKFDSFIQGTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763 >gi|158521371|ref|YP_001529241.1| response regulator receiver sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510197|gb|ABW67164.1| response regulator receiver sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 403 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 72/235 (30%), Gaps = 26/235 (11%) Query: 5 ICFNLSSMD-LVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEV--------- 49 + +++MD L +L L + + H+I +P+ + + L+ E + Sbjct: 131 MEQQMTAMDRLASLGTLSTGVAHEINNPLAMMREAAGYMRLVLEKEDMVQWPGKTGLAKG 190 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQ 101 ++ I + + + ++ + + + + Sbjct: 191 LEKIEKGIERIRRITHLLLGFVRPADHACARTDVKELVSESIELVTKEMQGKQIAVDRKM 250 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 G ++++NL A ++ R G +T+S+ +++ ++ G Sbjct: 251 DDTEGVAWTDPYALRQVMINLLTNAVHAIQREGTITVSLSEAEGCLAIAVSDTGVGI-PG 309 Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + Y + R+ + + + Sbjct: 310 ENLNKIFEPFFSTKPSDKGTGLGLYVSRGIVERLDGRIGVKSAVGRGTTFTVEIP 364 >gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1524 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 60/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + + L + + H++ +P+ +I E+L + + + I Sbjct: 1122 LRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVLNAEQLRSLSTIE 1181 Query: 55 LSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQV 102 S + + +V+ ++ + + Sbjct: 1182 QSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQADQKNIQLQFIAT 1241 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARF 160 ++L+NL A P G + I + N S+ G Sbjct: 1242 PVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCVHLSVTDTGIGI-A 1300 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + V + V + + + + L Sbjct: 1301 PEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDSEVGRGSTFIVTLP 1360 >gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 23/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%) Query: 2 AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 + + + +L + + + H+I +P+ + LL + E + Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202 Query: 52 LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 +++ S + + + L Q +A Sbjct: 203 YVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149 + + ++LLNL A G + F Sbjct: 263 LTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSCYF 322 Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++K +G + F + + + L + E Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382 Query: 205 HNVVLSALLE 214 + Sbjct: 383 KGSTFWFTVP 392 >gi|73539982|ref|YP_294502.1| sensor histidine kinase [Ralstonia eutropha JMP134] gi|72117395|gb|AAZ59658.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 659 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDE------VGIEDE 48 + + + L AL + + I H++ P+ A+ + LL+ G Sbjct: 411 LRAAQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRVLLERGQLAAAEGNLSA 470 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSW 104 + L F A SV + + ++ + Sbjct: 471 IADLTERMGKITGQLKLFAGKARPPRRSVLVSAAIEHVLALLAPRLTGVTLHVDGLHALP 530 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160 + ++LLNL A ++ + + ++ NG Sbjct: 531 NIAVRADELKLEQVLLNLIGNALDAIASAAPAQGRIDVSVSADASAVTIQVRDNGTGISP 590 Query: 161 PEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + + + + E +L D V + +L + Sbjct: 591 EDLP-RLFEPFFTTKETGQGLGLGLAISSSIVREFGGQLSAANADGGGAVFTIVLTR 646 >gi|15965555|ref|NP_385908.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|307302675|ref|ZP_07582431.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|15074736|emb|CAC46381.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|306903039|gb|EFN33630.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 869 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60 +N M+ V L I HD + + AI S + LL + L+ + + Sbjct: 468 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 527 Query: 61 II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R ++ +GD+ +++ + +V+V + + + + Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVKTD 587 Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156 ++LLNL + A ++P GG +T+ ++ ++ + + G Sbjct: 588 LGQFEQVLLNLAVNARDAMPAGGIITLRTRNLPASEVAALGRRELPEEDFVMVEVSDQGT 647 Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + V + ++ + PE LL Sbjct: 648 GI-PPEIMDKIFEPFFTTKDVGKGTGLGLSMVYGIVKQSGGYIYPESEIGSGTTFRILLP 706 Query: 215 K 215 + Sbjct: 707 R 707 >gi|47566186|ref|ZP_00237214.1| histidin [Bacillus cereus G9241] gi|47556739|gb|EAL15070.1| histidin [Bacillus cereus G9241] Length = 466 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKICISTNLNPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + S+K G + + Sbjct: 364 NAIRYTNQNGAIMITLRQIDDYCELSIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + +S L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESAKGNGTTVSIKLK 458 >gi|289624477|ref|ZP_06457431.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298487714|ref|ZP_07005755.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157806|gb|EFH98885.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330870201|gb|EGH04910.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 697 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +A+ S + A+ L I HD + + I SLELL + ++ R Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ L F R VD + +E++I + ++V + Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427 Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151 + ++ LNL + A ++PR + Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE + D + + V ++ ++ + + Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546 Query: 210 SALLEK 215 L + Sbjct: 547 CLYLPR 552 >gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1255 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 57/216 (26%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ SP+ AI +LL E +++ + + + + Sbjct: 1035 AVVSHELRSPLNAILGWAKLLQTRSFEPAMLRRGLETIERNVETQVQLIEDLLDISRMVR 1094 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------------LSRERAKILLNLF 123 + V + + + + + +I NL Sbjct: 1095 GTLRLNFMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRVAGDLHRLQQIFANLL 1154 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSH 179 A P GG+V + + + + + G F + GN + Sbjct: 1155 TNAIKFTPAGGQVEVRLVNCGAQVQIMVIDTGKGIAADFLPYIFDRFRQGNDAREPQEGL 1214 Query: 180 DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L +K + + L Sbjct: 1215 GLGLAIVRHLVELHKGTIQAASAGPGQGATFTVTLP 1250 >gi|189424887|ref|YP_001952064.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421146|gb|ACD95544.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 503 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 75/240 (31%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54 ++ + M+ L I HD + + I + ++L + E+++ + Sbjct: 237 EDQLRHAQKMEAAGQLAGGIAHDFNNILQIISGNTQILQYDLKQTNPDPPQLLEILKAVE 296 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + L F R + ++ + D + + + + + +Q+ + ++ + Sbjct: 297 RGTALTRSMLAFSRKQTINSIPLELNQLVKDSQLLAQKLLQKNTTLQLDLAETALIITAD 356 Query: 115 R---AKILLNLFMVAHASLPRGGKVTI---------------SVQDSKNENIFSLKINGN 156 ++L NL A ++P GG +TI + + ++ G Sbjct: 357 EVLLQQVLFNLITNARDAMPTGGTITIATAERLLDEQSTGGAKDRVPGTYAVLMVQDTGQ 416 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V ++ + E S L Sbjct: 417 GI-PEEIRQKIFEPFFTTKEVGKGTGLGLAMVYGTVKQHGGFVQVESKAGLGSCFSVFLP 475 >gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105] gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105] Length = 1085 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ + + H+I +P+ AI L+LL++ ++ + +A Sbjct: 685 LTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLLEDTDLQARQRDYLSKIGSAA 744 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSW 104 + L + + + + L +++ ++ + Sbjct: 745 DVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYRAEEKAIQLYCSKDANC 804 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A+IL NL A + + + + FS+K G E+ Sbjct: 805 PVSLKGDRLRLAQILNNLLSNALKFTEKGRIHLQVQSVADGKQLQFSVKDTGIGMN-EEQ 863 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + L ++ E Sbjct: 864 CAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWVESTPGLGTTFHFT 918 >gi|126737848|ref|ZP_01753578.1| phosphate regulon sensor histidine kinase, putative [Roseobacter sp. SK209-2-6] gi|126721241|gb|EBA17945.1| phosphate regulon sensor histidine kinase, putative [Roseobacter sp. SK209-2-6] Length = 351 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 19/244 (7%), Positives = 60/244 (24%), Gaps = 32/244 (13%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58 ++ + + + + H++ +P+ A+ +E L ++ D + ++ + Sbjct: 108 DVSEREQAGQMRRDFVANVSHELRTPLTALVGFIETLQGPAREDSNARDRFLSIMSDEAA 167 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------------VQ 101 + + + + + V+ Sbjct: 168 RMNRLVGDLLTLNRVESRERQRPKERLDLALHLQSVLKTMQPLAENNSVTLNLGLPEGVE 227 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGN 156 E + ++ +NL A + +++ NG Sbjct: 228 SPDAYEIAGDPDQLLQVFINLVENAIKYGGDHVEVTLEFLERDRSLRGPAVQVTVRDNGQ 287 Query: 157 LA---RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 P + + + + V + ++ RL + Sbjct: 288 GIDPIHLPRLTERFYRADSHRSRELGGTGLGLAIVKHIISRHRGRLRINSERAVGSTFTV 347 Query: 212 LLEK 215 LL + Sbjct: 348 LLPR 351 >gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 646 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 60/241 (24%), Gaps = 31/241 (12%) Query: 4 NICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 L L + + HD+ SP+ AI +LL +++ Sbjct: 402 ERNQLLQLEKLARAEAEAANHTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQLDETTFTR 461 Query: 53 IRLSSMSAII---------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + ++L F + + + Sbjct: 462 ALETIERNAQSQSKLLEDLLDMSRVLRGKLQLEFCQVDLAAIIGVAIETAYPSAKAKNIH 521 Query: 98 KRVQVSWTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + + ++L NL A P G++T+ + + +E ++ G Sbjct: 522 LKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYTDSEAHITVTDTGI 581 Query: 157 LARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSAL 212 + F + + + + L + + + + Sbjct: 582 GIKSEFLPYVFDRYRQADCQHKQHGLGLGLAIARYLIELHGGAIHVTSPGEGQGTTFTIK 641 Query: 213 L 213 L Sbjct: 642 L 642 >gi|163847015|ref|YP_001635059.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524838|ref|YP_002569309.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668304|gb|ABY34670.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448717|gb|ACM52983.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 796 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 61/231 (26%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV------MQL 52 ++ S L A+ + I H+ + + + +L L + +E + + Sbjct: 417 QESQTELGRSAKLAAVGTFAASIAHEFNNLLSGMLGYAQLGLADDDVEMKNEALKVVLDT 476 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKI 109 + L F R D + ++E + Q+ I Sbjct: 477 CKRGRSITGSLLTFARRRDSRRELSDLREVVDGTLTLMEIELRKHNIRVVRQIDMVPPTI 536 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168 S + +++ LNL A ++ G S N + G QI Sbjct: 537 CDSGQISQVFLNLLTNARDAMKPQGGTLTVSLTSDNEWITLQVTDTGCGI-PEAVRRQIF 595 Query: 169 DGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + + E ++ L Sbjct: 596 QPFVTTKNTTGSQSGTGLGLAVSYGIIKNHNGHFDVESEVGKGTTMTIRLP 646 >gi|330844471|ref|XP_003294148.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum] gi|325075445|gb|EGC29332.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum] Length = 952 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +++ + + + I H+I +P+ + E+L + + I + + Sbjct: 278 LMEARDQAVAATKIKSQFLATISHEIRTPLNGVIGMAEMLLKTSPLNTEQHDIAETIFGS 337 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------------S 103 L + +++ ++ + + Sbjct: 338 GELLLSITSDILDFSKIEASRLELEMIEFDFIGCLEGIAKTIGVSINNKPIEIVTLFDPD 397 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 + +I+LN+ A +G + + + + ++ +G Sbjct: 398 IPHRLVGDPNRLVQIMLNMGTNAVKYTEKGHIIFKVSVLSRKHNWCKVKIGIEDSGIGI- 456 Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSAL 212 E+ + + + LA +L E + S Sbjct: 457 KEEQRKHLFEPFHQIDASTTRKYGGSGLGLAISSKLAKLMGGSVLLEKSTPGVGSLFSVT 516 Query: 213 LE 214 LE Sbjct: 517 LE 518 >gi|319786168|ref|YP_004145643.1| multi-sensor signal transduction histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317464680|gb|ADV26412.1| multi-sensor signal transduction histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 533 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 61/224 (27%), Gaps = 18/224 (8%) Query: 8 NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61 S+ L A+ + + H+I +P+ AI +++LL E + ++Q+I M Sbjct: 303 RAESLTLAAMGRFSASLAHEIRNPLAAISYAVQLLQESRGMDDADRRLLQIIHQQCMRTN 362 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113 ++ + + + L Q + ++ + Sbjct: 363 GIVENVLGMARRERAKPEHVDLTGFVQRFVEDYRATMPIETDTLEAGLPARAVPALVDPA 422 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFTQIVDG 170 +IL L A + + + G Q+ Sbjct: 423 HLQQILTALVQNALRYGRMPDEPARVKVRVSTQDRNAVVEVMDRGPGIPEGTV-AQLFRP 481 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + Y LA N+ L + L Sbjct: 482 FFTTSEHGTGLGLYIAGELARANQATLRYVPVPGGGACFRITLP 525 >gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 1001 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 57/239 (23%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + H++ +P+ I +ELL ++++ + S+ Sbjct: 755 AKENAERADQAK--TEFLTMMSHELRTPMNGIIGMIELLKTTELDEDQRNYTDILMESSG 812 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 L + + +D L I + + + Sbjct: 813 SLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLFSAKAKEKGLLLSCSINTTVP 872 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLARF 160 I ++L+NL A G + F +K G Sbjct: 873 DVIIGDGLRLRQVLVNLISNAIKFTNEGSISMSVEGLHRTGTQEFTLAFQVKDTGIGIPA 932 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + ++ + L + E + + Sbjct: 933 EQQHQLFMSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESREQLGSSFYFTIP 991 >gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 928 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 68/248 (27%), Gaps = 35/248 (14%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K + L L A +R+ H+I +P+ +I ELL+E ++ + + Sbjct: 267 RKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSILGMSELLEETSLDFDQKNYV 326 Query: 54 RLSSMSAIIRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + S + L + +D + G+G I + + Sbjct: 327 QTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDLIDLVEGIGRILGLKAQEKGLKLT 386 Query: 100 VQVSWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKI 153 V+ + +IL+NL A G + K + ++ Sbjct: 387 CWVAPEVHRHVLGDPTRLQQILINLLSNAIKFTEHGEVTLHILPGPLPADKETILVTVSD 446 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G ++ + + + L + E + Sbjct: 447 TGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLAISKKLIELMDGGIRIESNEGAGTT 506 Query: 209 L--SALLE 214 + L+ Sbjct: 507 FLLTVRLK 514 >gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] Length = 2406 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 19/238 (7%), Positives = 62/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 N+ + ++ + I HD+ +P+ + ELL + + V + + Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106 + + + G + I + + ++ + Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDL 1994 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + +I +NL ++ P G ++ + + G + Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 ++ + + + + R+ + + ++ L Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] Length = 2418 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 19/238 (7%), Positives = 62/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 N+ + ++ + I HD+ +P+ + ELL + + V + + Sbjct: 1883 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1942 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106 + + + G + I + + ++ + Sbjct: 1943 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDL 2002 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + +I +NL ++ P G ++ + + G + Sbjct: 2003 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2062 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 ++ + + + + R+ + + ++ L Sbjct: 2063 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2119 >gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 510 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 52/241 (21%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S+ + + + H++ +P+ AI ELL E E ++ Sbjct: 255 LQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLLEDASEWGEWEISEDLEKIK 314 Query: 61 IIRLKFMR------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + I ++ + Sbjct: 315 SAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKNNNRLQVDTP 374 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLAR 159 + + ++L NL A G + + F++ +G Sbjct: 375 PEEITLFTDATKLRQVLYNLLSNATKFTTDGEIMLKASLCRLRRQPRLEFAVSDSGIGM- 433 Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ +I + + + L Sbjct: 434 SEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSRPGAGATFTVSL 493 Query: 214 E 214 Sbjct: 494 P 494 >gi|209916101|gb|ACH90385.1| two-component osmosensing histidine kinase [Stemphylium vesicarium] Length = 1329 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 60/243 (24%), Gaps = 32/243 (13%) Query: 3 KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + +L + + + H+I +P+ I +L + + +++ + Sbjct: 727 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 786 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102 A L + + + + + +I + I V Sbjct: 787 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 846 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155 + + S +I+LNL A F++ G Sbjct: 847 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAPEQECGPDHYVFQFAVSDTG 906 Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 R Q DG+ + L R+ E V Sbjct: 907 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 966 Query: 211 ALL 213 L Sbjct: 967 FTL 969 >gi|296131169|ref|YP_003638419.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] gi|296022984|gb|ADG76220.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] Length = 365 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 58/216 (26%), Gaps = 18/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFG 72 + H++ +P+ I EL D +D + IR + + + L Sbjct: 150 FVADAAHELRTPVTTIRGYAELFDRGARDDPQELPKVLSRIRSEAERMGDLVDDLVLLAR 209 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + G D+ + D V + ++L NL Sbjct: 210 LDAERELEHGPVDLTVLAHDAAMDARAADGERTVVVDEDGPVVVLGDEAALRQVLANLLT 269 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSH 179 P G + T+ V+ + + +G F + + Sbjct: 270 NVTRHTPPGTRATVRVRADGPHAVLHVADDGPGLAPEHREHVFERFYRADAGRARATGGA 329 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +AH + + ++ L + Sbjct: 330 GLGLSIVAAIAHAHGGTVAAVPTPGGGTTITLQLPR 365 >gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf] gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf] Length = 615 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 KNI S L+ S I H++ +P+ I +++LL + +D+ ++L Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405 Query: 53 IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103 I+ + + + + Y + V + + Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E+ ++ + KI + + GG + + ++D +K G Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHIFVKIKDCGENVYIHVKDTGVGIPS 525 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + V +K + + L Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584 >gi|166365091|ref|YP_001657364.1| two-component sensor histidine kinase [Microcystis aeruginosa NIES-843] gi|166087464|dbj|BAG02172.1| two-component sensor histidine kinase [Microcystis aeruginosa NIES-843] Length = 434 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55 L +L L L S I H+ +P+ I ++ +LL+ + + ++ Sbjct: 200 HRLLLQEKELSDLKIQLFSMISHEFRTPLTVILSASQLLENGLKDADQSSRKNLYRIQSS 259 Query: 56 SSMSAIIRLKFMRLAF-------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + L +D ++ + + + ++ G Sbjct: 260 VKLMNQFLTDILILTRAESGNLSCQLEPLDIEAFCLNLVEDFQFINKNNTPIKFVSQGLM 319 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 I + + L A P G +++ + + +F ++ +G + Sbjct: 320 IRPYLDEKLLYSILSNLLLNAIKYSPTGAGISLILWKDSDRIVFQVRDHGIGIAEEDRGK 379 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G I + V ++ + + D + L Sbjct: 380 IYEPFYRGQNVENIIGTGLGLAVVKKCVELHRGEIALDSQVDKGTSFTVKLP 431 >gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 1014 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 630 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 631 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750 Query: 208 VLSALLE 214 ++ L Sbjct: 751 TVTVALP 757 >gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 23/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%) Query: 2 AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 + + + +L + + + H+I +P+ + LL + E + Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202 Query: 52 LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 +++ S + + + L Q +A Sbjct: 203 YVKVIKTSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149 + + ++LLNL A G + F Sbjct: 263 LTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSCYF 322 Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 ++K +G + F + + + L + E Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382 Query: 205 HNVVLSALLE 214 + Sbjct: 383 KGSTFWFTVP 392 >gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 593 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 61/236 (25%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 M + L + + H++ +PI + E + + + E+ Q+I Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASTEEEKKEIAQIIYD 410 Query: 56 SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S+ + + Y + + Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDIAV 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + + + ++ NL A GG V I+ Q K+ +K +G+ + Sbjct: 471 SQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDGLKIDIKDSGSGIPEEDL 530 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + D + + Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTAFTFYIP 586 >gi|296184967|ref|ZP_06853378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|296050749|gb|EFG90172.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 473 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 26/229 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAI 61 L + I H++ +P+ I +++L + + + + + Sbjct: 204 EKLRTEFFANISHELKTPLNIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLL 263 Query: 62 IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + + +I Q + +I + + E+ ++ Sbjct: 264 RLINNLIDSTEIDSKFIELNMVNCNIVNLVEEITQSVAKYINNNISITFDTDLEEKIIAC 323 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFT 165 + K+ + + GG + +++ D K+ ++K G Sbjct: 324 DLDKVGRIILNLLSNSVKFTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRF 383 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + VD + + I V L +K + E + L Sbjct: 384 RQVDKSFTRKNEGSGIGLSIVKSLVEMHKGSIFVESKYGIGTKFTIKLP 432 >gi|317052667|ref|YP_004113783.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947751|gb|ADU67227.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 753 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQ--- 51 + + N +L + + H+ +P+ I S ELL + DE + Sbjct: 515 LRQQEELN----ELKSTFVQMVSHEFRTPLAGIMGSAELLKKYLERLSPERRDEHLDTIL 570 Query: 52 ----LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + ++ S L+ + Q I +R+Q+ + Sbjct: 571 SGVQRMVFMMEEILALGAMDSGQTNFSPSPVDLVAMCRAIQDQLHSIFPGQRIQLDFRDI 630 Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + IL NL A P V S+ ++ E F + G + Sbjct: 631 PTCAMLDESLLHHILTNLLSNALKYSPATSPVHFSIFNTTKELCFRVTDFGIGIPESDRG 690 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F G+ S I I V + + + + + + Sbjct: 691 RLFEAFFRGSNASHIQGTGIGMMIVKRCLDLHNGTIQIQSKPNQGSTFTVTIP 743 >gi|288937602|ref|YP_003441661.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288892311|gb|ADC60629.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 761 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L M V L + HD + + I SLEL++ + + ++ Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + +V L ++ +++ + +++ + Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506 Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL M A ++ +VT S ++ + +G+ Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621 >gi|255524740|ref|ZP_05391691.1| histidine kinase [Clostridium carboxidivorans P7] gi|255511513|gb|EET87802.1| histidine kinase [Clostridium carboxidivorans P7] Length = 330 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 26/229 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAI 61 L + I H++ +P+ I +++L + + + + + Sbjct: 61 EKLRTEFFANISHELKTPLNIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLL 120 Query: 62 IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + + + + + + +I Q + +I + + E+ ++ Sbjct: 121 RLINNLIDSTEIDSKFIELNMVNCNIVNLVEEITQSVAKYINNNISITFDTDLEEKIIAC 180 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFT 165 + K+ + + GG + +++ D K+ ++K G Sbjct: 181 DLDKVGRIILNLLSNSVKFTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRF 240 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + VD + + I V L +K + E + L Sbjct: 241 RQVDKSFTRKNEGSGIGLSIVKSLVEMHKGSIFVESKYGIGTKFTIKLP 289 >gi|218887082|ref|YP_002436403.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758036|gb|ACL08935.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 372 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 16/236 (6%), Positives = 59/236 (25%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + ++ + L L + + H I +P+ ++ L L+ + E + Sbjct: 128 LEESHETLRQTEKLALVGKLAAGVAHSIRNPLTSVKLRLFALERSLKLGPDQKEQQEDFE 187 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTG 106 + + + ++ + ++ + + + V V Sbjct: 188 VIAAEIRHLDAIVTNFLEFSRRPRLRMQPVSPSDVVDMTLQLLKHRLESFNVAVAVHRAE 247 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLA 158 + + ++ L A ++ + + + + +G Sbjct: 248 RLPVVDGDAEQLKEALVNLILNACEAMGYDGTLDITEEKGIINPLGRAVVIRIADSGPGV 307 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + E+ L +L Sbjct: 308 -PQHIREEVFQPFFSTKEEGTGLGLPIARRIFEEHGGWLHLHSAHGKGATFVIVLP 362 >gi|165870288|ref|ZP_02214944.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|170705928|ref|ZP_02896390.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|190566438|ref|ZP_03019356.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227815223|ref|YP_002815232.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229604442|ref|YP_002866358.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|164714176|gb|EDR19697.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|170128930|gb|EDS97795.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|190562573|gb|EDV16540.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227007185|gb|ACP16928.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229268850|gb|ACQ50487.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 346 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 112 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 168 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 228 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G+ + Sbjct: 229 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 288 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 289 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 341 >gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 858 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 51/236 (21%), Gaps = 28/236 (11%) Query: 4 NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 L + + + + I H+I +P+ I ++L + R+ S Sbjct: 465 ERTRELEAANQAKSTFLANISHEIRTPLNGILGLAQVLRTTSRSKQRQDQARMIEESGET 524 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWTG 106 + + + + L + S Sbjct: 525 LTQLLNDVLDMSKIEAGKMELSPQVVDPARLFGDMHTLFQASAEAKSLDFSVEIDPSLPE 584 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + L NL A +G + + + + G PE Sbjct: 585 RLEFDPLRVRQCLSNLLSNAIKFTSKGSVQLSARWHRETDQAGLLEIKVCDTGIGI-PPE 643 Query: 163 KFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 K + +S + LA + E + Sbjct: 644 KLDTLFSPFTQSDAAIAGEFGGTGLGLSIARDLARLMGGDITAEATPGQGSTFTLT 699 >gi|94309174|ref|YP_582384.1| periplasmic sensor signal transduction histidine kinase [Cupriavidus metallidurans CH34] gi|93353026|gb|ABF07115.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Cupriavidus metallidurans CH34] Length = 668 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 + + + L AL + + I H++ P+ A+ + LL+ ++ Sbjct: 425 LRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRVLLERGQLDAATGNLSA 484 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107 + L F A +V + + Q+I + G+ Sbjct: 485 IADLTERMGKITGQLKLFAGKARQRRNAVRVRAAIDHVLQLIAPRLGRVMLRVRGLDGDA 544 Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLAR 159 + ++LLNL A ++ G V + ++ NG Sbjct: 545 ADLAVWADELKLEQVLLNLVGNALDAIAAAGAEDGRVDIAVSATDETVTLVVRDNGPGI- 603 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P+ ++ + + + + E +L ++ L + Sbjct: 604 APDALPRLFEPFFTTKEIGQGLGLGLAISSSIVREFGGQLTAGNVEGGGAEFVVTLRR 661 >gi|30261987|ref|NP_844364.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47527252|ref|YP_018601.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184829|ref|YP_028081.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|167638312|ref|ZP_02396589.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|177650941|ref|ZP_02933838.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|30256613|gb|AAP25850.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47502400|gb|AAT31076.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178756|gb|AAT54132.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|167513613|gb|EDR88982.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|172083402|gb|EDT68463.1| sensor histidine kinase [Bacillus anthracis str. A0174] Length = 351 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 173 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G+ + Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 293 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 346 >gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343] Length = 389 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL D+ + E + LI+ ++ Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213 Query: 59 SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106 + + + GS L L ++ A + ++W Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNA 273 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 +IL +L A +G + + F + G + Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + ++ + E + Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382 >gi|332297791|ref|YP_004439713.1| PAS/PAC sensor signal transduction histidine kinase [Treponema brennaborense DSM 12168] gi|332180894|gb|AEE16582.1| PAS/PAC sensor signal transduction histidine kinase [Treponema brennaborense DSM 12168] Length = 397 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 78/238 (32%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV-----------GIED 47 + L M+ L +L L + + H+I +P+G+I ++L+ + E Sbjct: 147 QRRQETLLRRMEGLASLTNLAASVAHEIKNPLGSISIHIQLIQKAVKKARESGGTLPDEK 206 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKR 99 + + + + + + V++ + L +E + + Sbjct: 207 FLEKYLNVVTEEIDRLNGIVVDFLFAVRPVNAELLLLDPNVLITQFLEFCMPELTEKHIE 266 Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 VQ + + + +++LNL A ++ GG + +S Q + + ++ G Sbjct: 267 VQTELMKDPPKILLDEKLFRQVVLNLIQNAEGAMSGGGMLLVSTQLKNDRFVINIADTGV 326 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + E + + + S L Sbjct: 327 GMDEK-TSARIFEPYFTTKATGTGLGLTMVYKIIKEFSGDIQVQSFPGEGSLFSITLP 383 >gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 998 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 62/246 (25%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 +++ L +VA S + H+I +P+ A+ LL E ++ + + Sbjct: 334 REDVEVELKKAKIVAEQANAARGAFLSTVSHEIRTPMNAVIGMSGLLRETALDAQQEEFT 393 Query: 54 RLSSMSAIIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVD 97 SA + + + S+ + + + + Sbjct: 394 VAIEDSANALMVIIDEILDFSRIDAGKLTIEATDCHLLSLVEGSADALAVKARQQGLRLL 453 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKI 153 V+ + ++LLNL A P R ++ Q F + Sbjct: 454 CFVEPDLPVTVSVDAGRLRQVLLNLIGNAVKFTPAGEVRILVRQVNRQHDLCTVRFEVAD 513 Query: 154 NGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G P G+V + L + + Sbjct: 514 TGIGITAPVIALLFNPFVQADGSVTRKYGGTGLGLSICKRLVELMGGHIGVDSKPGAGST 573 Query: 209 LSALLE 214 L Sbjct: 574 FWFELP 579 >gi|332655192|ref|ZP_08420933.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16] gi|332516052|gb|EGJ45661.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16] Length = 879 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 69/234 (29%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 + + L A L I HD+ +P+ +I + L G Q+ Sbjct: 638 KEAAAVLAKNEQLRANLLRSISHDLRTPLTSISGNANNLLSNGNLFDTKTKEQMYTDIYD 697 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114 A+ + + + + + L +++++ +A R + E + Sbjct: 698 DAMWLINLVENLLSVSRLEEGRMNLHVSTELMDEIVAEALRHINRKSVEYHLNVQSSEEY 757 Query: 115 ---------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++N+ A P G ++ I + N S+ NG K Sbjct: 758 LLVQVDAKLIIQVIINIVDNAIKYTPPGTEIDIGWRKQGNLVYVSVSDNGPGIPDQAKPH 817 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + + + H + + + Sbjct: 818 IFDMFYSVSNQIADSRRSMGLGLALCKSIINAHGGEITVTDQLPHGSIFTFSVP 871 >gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 627 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 64/241 (26%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + + + + + H+I +P+ I ++LL ++ + + + Sbjct: 236 ETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDMEMPPAQREYLNFIDS 295 Query: 59 SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQV 102 SA + + ++ + +++ D + V + Sbjct: 296 SAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVMRLRTQAKGLLLSLVCPP 355 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARF 160 + +IL NL A G V S +F++++ + Sbjct: 356 DLAEVLVGDPHRLTQILNNLVGNAIKFTAGGEIVVRASSRSRGDGTVLFAVEVQDSGIGM 415 Query: 161 PEKFTQ-IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + Q I + + + L + + + Sbjct: 416 DQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHGTITVASSPGNGSTFCFAV 475 Query: 214 E 214 Sbjct: 476 P 476 >gi|166030503|ref|ZP_02233332.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC 27755] gi|166029665|gb|EDR48422.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC 27755] Length = 957 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 28/222 (12%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + HDI +PI I L +L++ G + E + + L + ++S Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKIHESSKLLLSLINDVLDMAKLESD 643 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123 + E + D + + +S+ + K+L+NLF Sbjct: 644 TVVFGDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLF 703 Query: 124 MVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172 + TI + F ++ NG ++ Sbjct: 704 TNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIGMSEEFIKNELFTPFVQADNSP 763 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V L + + E + +L Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805 >gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1059 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 61/239 (25%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + L + + H+I +P+ I +ELL + E Q + S ++ Sbjct: 528 AKQEAESANHAKSAFL--ATMSHEIRTPLNGITGMIELLQRSALSVEQRQQVETISKCSV 585 Query: 62 IRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + Q + + + Sbjct: 586 VLMDILNDILDLSKIEAGQLVLERAPFSPTQLLLNLLEVMQPQARNKELDLQLNMDEKLP 645 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161 + + ++ LNL A PRG D +++ G Sbjct: 646 STMLGDATRLRQVALNLIGNAIKFTPRGWVKISLLVHERIDDIVWVELAVQDQGIGI-AD 704 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 EK + + + + L + I+ L Sbjct: 705 EKLVHLFNPFTQADSSITRNYGGTGLGLAISKRLVEAMAGAISVTSIEGKGTHFRVTLP 763 >gi|330888950|gb|EGH21611.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 697 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +A+ S + A+ L I HD + + I SLELL + ++ R Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ L F R VD + +E++I + ++V + Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427 Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151 + ++ LNL + A ++PR + Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE + D + + V ++ ++ + + Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546 Query: 210 SALLEK 215 L + Sbjct: 547 CLYLPR 552 >gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 1122 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 59/232 (25%), Gaps = 27/232 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + S + + H+I +P+ AI +L+ ++ + + ++ + + Sbjct: 713 ARAVAEAASQSKSA--FVANMSHEIRTPMTAILGYADLVRDMIEDPQAIEHLETIRRNGD 770 Query: 62 IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WT 105 L+ + + + + I +V + VQ Sbjct: 771 YLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLP 830 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +IL+NL A + G E+ Sbjct: 831 KTIESDGKRLKQILINLVGNAIKFTQ--KGWVQIRVRFNKWLHIDIVDTGIGM-SDEQQK 887 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ V T + L ++ + + Sbjct: 888 RLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTIIASSTEGVGSTFTV 939 >gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1021 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 21/244 (8%), Positives = 62/244 (25%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51 + + + + + + + + H+I +PI ++ ++LL + + + Sbjct: 532 LQRARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELSEAEREETTSLLRLA 591 Query: 52 --LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--- 106 + + K S + + A + +++ Sbjct: 592 AEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQARARGIELVMEPLDQ 651 Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGN 156 +IL+NL A R + +++ + + G Sbjct: 652 SEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEEDSRWLVIDVVDQGI 711 Query: 157 LARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 P++ ++ + + LA + L + Sbjct: 712 GI-APDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELHVRSQVGVGSTFT 770 Query: 211 ALLE 214 L Sbjct: 771 LTLP 774 >gi|317500634|ref|ZP_07958853.1| hypothetical protein HMPREF1026_00796 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089886|ref|ZP_08338779.1| hypothetical protein HMPREF1025_02362 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897952|gb|EFV20004.1| hypothetical protein HMPREF1026_00796 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403583|gb|EGG83141.1| hypothetical protein HMPREF1025_02362 [Lachnospiraceae bacterium 3_1_46FAA] Length = 351 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 73/242 (30%), Gaps = 30/242 (12%) Query: 4 NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------ 51 + ++ + VA L S I HD+ +PI AI +E + + + Sbjct: 102 RLRLKANAEEKVAFDRENKELISNISHDLKTPITAIKGYVEGIMDGVADTPERMDRYIKT 161 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKR 99 + ++ ++ + + T + G ++ I Sbjct: 162 IYNKANEMDLLINELTLYSKIDTNRIPYNFTTISAKGYFGDCGEDLHMELESKGIEFTYC 221 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLA 158 + + I + +++ N+ + + + KVT+ V+D + L NG Sbjct: 222 NTMEEDCKVIVDPEQLRRVINNIVSNSLKYMDKPNGKVTMEVKDVGDFIQVELGDNGKGI 281 Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F + + I V + E+ + + + ++ Sbjct: 282 AAKDLPYIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGNIWATSEEGAGTTMYFVI 341 Query: 214 EK 215 K Sbjct: 342 RK 343 >gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 389 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ AI LL D+ + E + LI+ ++ Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213 Query: 59 SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106 + + + GS L L ++ A + ++W Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNA 273 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 +IL +L A +G + + F + G + Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + ++ + E + Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382 >gi|257069858|ref|YP_003156113.1| signal transduction histidine kinase [Brachybacterium faecium DSM 4810] gi|256560676|gb|ACU86523.1| signal transduction histidine kinase [Brachybacterium faecium DSM 4810] Length = 597 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 59/215 (27%), Gaps = 20/215 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRL------- 69 + + H++ +P+ ++ LEL + + ++++ +A L + Sbjct: 357 FVASVSHELRTPLTSVIGYLELAQDDLALSKASAAYLQVAHRNAEQLLLIVEDLLADQVA 416 Query: 70 -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + + + + + + + T E ++ + + NL Sbjct: 417 RSGTQELTLRPRRLSEIAQQAAESFALRAEEAGIALELDLQETPELPLDAQRLQQAVGNL 476 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----TID 177 A RGG+V + N S+ G E+ I Sbjct: 477 LSNALKYTGRGGRVDLRTGVHGNHAELSVADTGIGMSAQEQRNLFTQYYRTRTARESAIA 536 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 H I + + ++ + Sbjct: 537 GHGIGLSLTRQIVLAHGGQISVRSQPGEGSTFTLR 571 >gi|229172196|ref|ZP_04299760.1| hypothetical protein bcere0006_13100 [Bacillus cereus MM3] gi|228611184|gb|EEK68442.1| hypothetical protein bcere0006_13100 [Bacillus cereus MM3] Length = 423 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFENLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L + Q + + + + Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDVLVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGIGIPTA-IQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQD-GTTFTISIP 409 >gi|225018009|ref|ZP_03707201.1| hypothetical protein CLOSTMETH_01945 [Clostridium methylpentosum DSM 5476] gi|224949215|gb|EEG30424.1| hypothetical protein CLOSTMETH_01945 [Clostridium methylpentosum DSM 5476] Length = 507 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 22/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHN----------------SLELLDEVGI 45 ++ L L L I HD+ +P+ I +L LL ++G Sbjct: 268 QESSKIELEKEKLRNNLLRSISHDLRTPLTGIAGSASFLMDSYDSLDKQTALSLLSDIGS 327 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + ++ L VD ++ + + Sbjct: 328 DVTWLNNLVENLLNMTRIQDGKLLIKKENEVVDDVVSEAVRRVAKLQKEHDLQIHVPNDI 387 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 R ++ +NL A + V ++V + + +F + NG PE Sbjct: 388 LLVPMDGRLIVQVFVNLLGNAFEHTRKDSSVELNVYVEEGQAVFEVADNGGGI-QPEILD 446 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + D LL Sbjct: 447 TLFESFVSAQNDTDSHRGIGLGLSICKAIVQAHGGDIQADNNDRGGATFRFLLP 500 >gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 469 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 65/237 (27%), Gaps = 26/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRL 55 +N+ + S L I H++ +P+ AI +LL + +++ Sbjct: 204 QNLEL-IESNRLKNQFMGIISHELRTPMNAILGFSDLLLRRFHDRYEPQQIAFLERILNN 262 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGE 107 + ++ + + + ++ + D+ + + +++ Sbjct: 263 AKHLLLMIEEILAYSRLKAHRLELQLEAFDLLELARITAEEMQCMADQKALALELDLPPS 322 Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +R ++ L A G + + +++ G Sbjct: 323 PLVVCNDRTRVRQILVNLLSNAIKFTDTGRVTLAIAPGKAEKLLITVQDTGIGIDPAH-Q 381 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + L + ++ E V L + Sbjct: 382 GRIFQEFWQVNQSQTRSQGGTGLGLSITSSLVTLMQGKIWVESELGEGAVFRIELPR 438 >gi|170760992|ref|YP_001786290.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169407981|gb|ACA56392.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 75/236 (31%), Gaps = 21/236 (8%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 MA + + L S + H+ +PI AI LL + + DE + Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 166 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + RL + +++ L ++ D + + K +++ + Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLKQKYYLDEQIRQTILLFEYQWTKKNITLDIN 226 Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 ++ N+ A + G + +++ + E + ++K NG Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286 Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ D + + V + K + ++ + L K Sbjct: 287 KNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICKGTIEISSHEEVGTEFTVKLPK 342 >gi|218895467|ref|YP_002443878.1| sporulation kinase [Bacillus cereus G9842] gi|218543075|gb|ACK95469.1| sporulation kinase [Bacillus cereus G9842] Length = 408 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 71/224 (31%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 M + + + + + I H+I +P+ A+ ++ + + ++ Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIER 243 Query: 60 AIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + + + D L+ + + + V +QV Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYAMQYRVKCHLQVDGNLPAINGD 303 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 406 >gi|149184835|ref|ZP_01863153.1| two-component signal transduction histidine kinase [Erythrobacter sp. SD-21] gi|148832155|gb|EDL50588.1| two-component signal transduction histidine kinase [Erythrobacter sp. SD-21] Length = 395 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 15/217 (6%), Positives = 54/217 (24%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68 + H++ +P+ +I +E L + + D+ + I+ + + Sbjct: 173 FVANASHELRTPLSSILGYVETLREDVNDFDPKMGDKFLATIQREGQRLQQLISDLMSLS 232 Query: 69 -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 +++ + + + ++ ++ +++ NL Sbjct: 233 RIEAEKHDLPDTTLELGALMDRAARDVAGDRVERLDIEAHGEFHVCGDEQQLEQLVRNLV 292 Query: 124 MVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVD--GNVESTID 177 A + S++ G + Sbjct: 293 DNALKYGAADEQVTVRLQPRGDKRVMLSVQDRGGGIAPEHLPHLTRRFYRTDPGRSRASG 352 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ +L + + + L Sbjct: 353 GTGLGLAIVKHIVERHRGKLAIDSVLGEGTRIKVTLP 389 >gi|115374332|ref|ZP_01461616.1| FrgB [Stigmatella aurantiaca DW4/3-1] gi|115368642|gb|EAU67593.1| FrgB [Stigmatella aurantiaca DW4/3-1] Length = 504 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 64/226 (28%), Gaps = 17/226 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSS 57 L + + +++ HD+ +PI A+ + + L E + + + L+ Sbjct: 264 QRERLEHLATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQV 323 Query: 58 MSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + T +D + D+ + +++ + + + + Sbjct: 324 ERLDRVVSTYQRLGRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGD 383 Query: 115 RAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + L + + + T + ++ G + + Sbjct: 384 HDLLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTR-ERAF 442 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + +V + + + + H +L L Sbjct: 443 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 488 >gi|88860607|ref|ZP_01135244.1| sensory box sensor histidine kinase [Pseudoalteromonas tunicata D2] gi|88817202|gb|EAR27020.1| sensory box sensor histidine kinase [Pseudoalteromonas tunicata D2] Length = 485 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 22/252 (8%), Positives = 68/252 (26%), Gaps = 39/252 (15%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------- 48 + + + + ++ L + + H+I +PIG + +++ L E E + Sbjct: 228 LEQAQQQLTQAEKMASIGQLAAGVAHEINNPIGYVMSNISSLKEYIDEFKSYFKTVELEN 287 Query: 49 --------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 M + F + + Sbjct: 288 KKTTDEVDFLLTDSAAIINSCMGGLERVRTIVKDLKTFSHSGQEQAVRFNLNQCVESALS 347 Query: 89 VIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK 144 ++ + + + + +++LN+ M A ++P+GG + I Sbjct: 348 LMGSEFKYGSYEIELHLIEPFADVLGTKNQIEQVMLNILMNAKQAMPQGGVIRIRSYIDG 407 Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEII 202 ++ +++ G ++ D + + + + + + Sbjct: 408 DKACLAIEDQGCGMDSK-VQQRLFDPFFTTKPVGVGTGLGLSISFKIIEAYQGEIQVKSE 466 Query: 203 DDHNVVLSALLE 214 + L Sbjct: 467 IGKGSCFTIKLP 478 >gi|119775347|ref|YP_928087.1| putative two-component sensor histidine kinase protein [Shewanella amazonensis SB2B] gi|119767847|gb|ABM00418.1| conserved hypothetical two-component sensor histidine kinase protein [Shewanella amazonensis SB2B] Length = 600 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 60/231 (25%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L V + + I H++ P+ AI + + E + + + + Sbjct: 359 LKDTQDELIQAAKLTVVGTMSASINHELNQPLAAIRSYTQNTQTFLERDMPGRARENLAI 418 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSW 104 + +T L ++ ++ A Sbjct: 419 ILELTDRLADIVGQFKSFTRKSQGKDGVVMLANCLQQALTIVQPELDKQKAQLTIHCEDE 478 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEK 163 + + ++L+NL A ++ + +S+ + ++ +G R Sbjct: 479 SLKVWCDGTRLQQVLVNLITNALNAMSQSPVKRLSISLLGGDPVTIRIQDSGPGVRDSLM 538 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + + + + + L Sbjct: 539 EKIFEPYYTTSERQGLGLGLSISRRIIESMQGDIRVANAPEGGAIFDITLP 589 >gi|95930270|ref|ZP_01313008.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133733|gb|EAT15394.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 946 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 64/235 (27%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 + ++I L S H++ +P+ I ELL + ++ + + Sbjct: 703 LLRDITRERELDQLKNEFISSAAHELNTPLTVIMGFAELLVNREYRQSITLEQQQEFLET 762 Query: 56 SSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + D + + + + E + + + Sbjct: 763 IRNKGEVLTSIVDDLLKLEQLEFGQSIQLQYHCFDLQLDIMTLVKHYEKTYTDHRFIVMV 822 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E ++L NL A P ++ IS+Q ++ + +++ G Sbjct: 823 EPCELWADQERVGQVLDNLLSNAVKFSPPQTRIHISLQMKNHQAVITVRDEGIGMEQKNI 882 Query: 164 FTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + D ++ L Sbjct: 883 DKVFDKFFRIDGSTTSKGGLGLGLTVAKSIIDAHHGSIRVDSEVDRGTTVTLTLP 937 >gi|219667581|ref|YP_002458016.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219537841|gb|ACL19580.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 389 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMS 59 + ++ N L + I HD+ +PI +I LE++ E + E E ++ + S Sbjct: 147 LQESERSNQEYEKNRKTLVANISHDLKTPITSIQGYLEVILEGCVGEPEKIKRYLETIYS 206 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----------------KRVQV 102 + + +D + E + D + + Sbjct: 207 NTAYMNKLIDDLFLFSKLDLDKVAMNYEVLSIGAYLDDLATELKFEFEERQFKFFYQNRT 266 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 + + + N+ A P KVT+ + +++ + NG Sbjct: 267 DRDYAVTIDGKRVYQGIRNIIDNAMKYGPEQDLKVTMELYVQEDDICIDIADNGPGIPEE 326 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + L + D + L Sbjct: 327 QLPHIFNRFYRLDTERSKDFTSTGLGLAIAKELIEAQGGTISAASTDRAGSRFTIKLP 384 >gi|318042449|ref|ZP_07974405.1| two-component sensor histidine kinase [Synechococcus sp. CB0101] Length = 426 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 13/211 (6%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + + H++ +P+ + E + V+ + L L + Sbjct: 213 QFSADVAHELRTPLANLLAVAEAQRAQPGIERVLAQGQRLQQLIADLLLLASLERPGAKT 272 Query: 77 VDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 L + D ++ + T RE +++L+NL A Sbjct: 273 PMQLCDLAEITADVVEDWSEIAVSSEQAVSMAHEAETTTLRGTERELSRLLINLISNALQ 332 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQF 183 P GG V + +Q S++ G ++ + + Sbjct: 333 HSPCGGTVDVRLQSQGRWLALSVRDQGPGIPLEDQQRIFDRFTRLQPDRSRQNGGSGLGL 392 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +AH + + H +ALL Sbjct: 393 AIAQAIAHRHGGEIRVASEPGHGATFTALLP 423 >gi|253576783|ref|ZP_04854109.1| ATP-binding region ATPase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843814|gb|EES71836.1| ATP-binding region ATPase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 639 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 62/223 (27%), Gaps = 10/223 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 M N M++++ L + + H++ +P+ L+LL + + + + Sbjct: 408 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLVEKQQNSDKVYLSMALEELD 467 Query: 59 SAIIRLKFMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 A + T + +I ++ V Sbjct: 468 RASAIITDFLTFAKPEGGKVTTLNVLEEFIHIEGILIPLANLQGGKITVHIPKNLYVRGN 527 Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + +N+ + +L G + I + ++ + +K NG E ++ + Sbjct: 528 SSKFKQAFINIIKNSIEALRGEGDIQIWSYEENDDVVIHIKDNGEGM-DEEVLARLGEPY 586 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + Sbjct: 587 FSNKTKGTGLGLMVTFRIIEVMNGQIHFTSKKGAGTEVVIRFP 629 >gi|228998792|ref|ZP_04158378.1| hypothetical protein bmyco0003_33520 [Bacillus mycoides Rock3-17] gi|229006308|ref|ZP_04163992.1| hypothetical protein bmyco0002_32260 [Bacillus mycoides Rock1-4] gi|228754954|gb|EEM04315.1| hypothetical protein bmyco0002_32260 [Bacillus mycoides Rock1-4] gi|228760967|gb|EEM09927.1| hypothetical protein bmyco0003_33520 [Bacillus mycoides Rock3-17] Length = 424 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 19/224 (8%), Positives = 65/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDMKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ + ++ + I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNIVKNGIEAIQENKGYLKVTAIQKDDVIIVRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIITLP 418 >gi|159029672|emb|CAO87750.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 391 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 57/235 (24%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 N ++ L S + HD +P+ I S LL+E Q + M Sbjct: 149 RTNQLEKAQELNQLKTEFVSMLSHDFRNPLNKILLSAGLLEESRDRLTKDQQVSYFRMIR 208 Query: 61 IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + VD L + + + G Sbjct: 209 SAIKDMDQLLTEVLLIGRADSGRLYCQFDPVDLLDYCQKLVESFMVKPEKQSAIIFQIEG 268 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + I L A P+G V + + +F + G + Sbjct: 269 SLERGLWDVNLIKHILTNLLGNAIKYSPQGNPVEFKIIVESEQVVFKIIDRGIGIPSKD- 327 Query: 164 FTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + V +K ++ E + ++ +L Sbjct: 328 QEHLFKPFYRGSNVDNIQGTGLGLAIVGRCVEAHKGQIYLESEEGKGTKITVILP 382 >gi|94264854|ref|ZP_01288629.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93454675|gb|EAT04940.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 262 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 26/240 (10%) Query: 2 AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 KN S DL I HD+ P+ I++ ++LL+ + + + Sbjct: 13 RKNRQLEEKSADLARSNAELEQFAYVISHDLRQPLRMINSYMKLLERALDDKLDDETREM 72 Query: 56 SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + + ++ L + + E + +++ + ++ Sbjct: 73 MGFAAGGAQRMDQMLVSLLEYSRVGRKGEPMVPLASRQALDEALDFLAPKIKETGATVRL 132 Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLAR 159 E ++ NL A + + F++ NG Sbjct: 133 SGDWPEIAASRDEFTRLWQNLIGNALKYRDPDRVCEVEISVTPEDEGWRFTVADNGIGID 192 Query: 160 F--PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 ++ ++ + I + + R+ E L K Sbjct: 193 PKQFDRLFKVFQRLHTRDKYEGSGIGLAVARKIVERHGGRIWVESQGAGQGCRFIFTLPK 252 >gi|301058094|ref|ZP_07199146.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300447726|gb|EFK11439.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 600 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 64/226 (28%), Gaps = 16/226 (7%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54 + + + + L + + H+I +P+G + +++L+ + + + Sbjct: 370 ERELVQADRMATIGKLAAGVAHEINNPLGIMQANVQLILARGWYDESAKEPLEAIRRNAV 429 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + L R VD + + ++ + + E I + Sbjct: 430 RAGQITKDLLNLTRPGDPRPTHVDLVELVRVTLSMLHPQLKRIRVDFQPNPEEIIVYADR 489 Query: 115 R--AKILLNLFMVA----HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++L+N+ + A + + ++ +N ++ G Sbjct: 490 NLLQQVLVNILLNAKNSLEEASKKEIRIRFCAICEENAACIRIEDTGRGIPRKYLNRIFE 549 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + ++ + E + L Sbjct: 550 PFFSHGKADGFGLGLFISRRIIEKHNGMIFAESEKGKGTHIIIELP 595 >gi|261824752|pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + +R+ H+I +PI I + LD+ + + +I +K + Sbjct: 135 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 194 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124 ++ + + +K +++ + + ++L+NL Sbjct: 195 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQ 254 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A + GK+ I+ +D + S+ +G E +I + + Sbjct: 255 NAIEATGENGKIKITSEDMYTKVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 313 Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 + E+ ++ E ++ VV + K Sbjct: 314 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 344 >gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2] gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2] gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395] gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] Length = 1020 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 493 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 552 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + ++ + T Sbjct: 553 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 612 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 613 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 672 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 673 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 726 >gi|170289259|ref|YP_001739497.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] gi|281412861|ref|YP_003346940.1| multi-sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] gi|170176762|gb|ACB09814.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] gi|281373964|gb|ADA67526.1| multi-sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] Length = 755 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + +R+ H+I +PI I + LD+ + + +I +K + Sbjct: 541 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 600 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124 ++ + + +K +++ + + ++L+NL Sbjct: 601 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQ 660 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A + GK+ I+ +D + S+ +G E +I + + Sbjct: 661 NAIEATGENGKIKITSEDMYTKVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 719 Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 + E+ ++ E ++ VV + K Sbjct: 720 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 750 >gi|118589310|ref|ZP_01546716.1| phosphate regulon sensor protein phor [Stappia aggregata IAM 12614] gi|118438010|gb|EAV44645.1| phosphate regulon sensor protein phor [Stappia aggregata IAM 12614] Length = 451 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 63/242 (26%), Gaps = 33/242 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 + +N + + H++ +P+ ++ +E L + D + ++ Sbjct: 201 LTENRRL----ERMRTDFVANASHELRTPLASLTGFIETLQGPARNDPDARDRFLSIMLD 256 Query: 56 SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106 + + ++ VD + + + +++ Sbjct: 257 QAGRMRRLIDDILSLSRIELKAHVRPANEVDLSEIVRHTADALSPLASDMGVEIRLQLPE 316 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLA 158 + + +R ++ NL A G V + S++ G Sbjct: 317 TPVRIKGDRDELIQVTENLIENALKYGHDGKFVDVGLSKPAAPQDALSWQLSVRDYGEGI 376 Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E ++ + + + V + ++ RL E Sbjct: 377 -PREHLPRLTERFYRVDVESSRAMKGTGLGLAIVKHILTRHRGRLEVESEPGQGATFKVS 435 Query: 213 LE 214 L Sbjct: 436 LP 437 >gi|158321846|ref|YP_001514353.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158142045|gb|ABW20357.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 669 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 22/229 (9%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQLIR 54 + L + ++A+ L + I H+I +P+G I E E + + ++ I Sbjct: 439 SKRQILQANKMMAIGELAAGIAHEIRNPLGIVRNHSFIIRGYSE---ENPLISKSLEYID 495 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGE 107 + L F R++ T VD + + I ++ ++ + + Sbjct: 496 SAIDRASKIIDNLLNFSRISDNVTELVDINLFIHSIVELQCKYMQKNGITYEINCEKGYS 555 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I IL+NL A + PRGGK+TI+V + G + +I Sbjct: 556 AITNQESLKHILINLISNAIDATPRGGKITINVYPHNQGMVIECVDTGEGIDPKDI-ERI 614 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + Y + K + E + Sbjct: 615 FNPFYTTKGPGKGTGLGLYIAYNEVKKLKGDIEVESKIHKGTKFKIYIP 663 >gi|15644111|ref|NP_229160.1| sensor histidine kinase [Thermotoga maritima MSB8] gi|4981919|gb|AAD36429.1|AE001790_1 sensor histidine kinase [Thermotoga maritima MSB8] Length = 755 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + +R+ H+I +PI I + LD+ + + +I +K + Sbjct: 541 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 600 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124 ++ + + +K +++ + + ++L+NL Sbjct: 601 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQ 660 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A + GK+ I+ +D + S+ +G E +I + + Sbjct: 661 NAIEATGENGKIKITSEDMYTKVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 719 Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 + E+ ++ E ++ VV + K Sbjct: 720 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 750 >gi|323136428|ref|ZP_08071510.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylocystis sp. ATCC 49242] gi|322398502|gb|EFY01022.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylocystis sp. ATCC 49242] Length = 390 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 27/222 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L S + H+I +P+ I + +LL+ + + +LI + + + M + Sbjct: 156 LASMLAHEIKNPLSGIRGAAQLLEPGLGDADRALTRLICEETDRIVRLVDRMEVFSDARP 215 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------IDLSRERAKILLNLFMVAHA 128 + + + ++ +V + + + LNL A Sbjct: 216 LKREQVNIHSVLDHVKQVAQSGFARRVRFVENYDPSLPPVYANRDQLVQAFLNLVKNAAE 275 Query: 129 SLPRGG----------------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ + F ++ NG + + D V Sbjct: 276 AIGDAVDGEIELSTAFRPGVSLRAMGEKSPVGLPLEFCVRDNGPGV-PDDIAAHLFDPFV 334 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +++ + E + L+ Sbjct: 335 TTKSSGTGLGLALVAKIVNDHGGIIECESLP-RRTTFRILMP 375 >gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453] gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453] Length = 409 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 63/235 (26%), Gaps = 25/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 ++ + + L + + H+I +P+ I LL +++E + + L S+ Sbjct: 167 EDENDRILQEK--SELLAVMSHEIRTPMNGIMGMSALLQLTSLDEEQREYVELIEQSSES 224 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTG 106 L + Y+ ++ + L + + + Sbjct: 225 LLSMIEHILEYSKVENTKMELVMEPFYLRPLMKQVTSLFMNDVQRKGIRLHVVIGDEVPE 284 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165 + + + ++L+NL A G + + S++ G + Sbjct: 285 KVTADANKIRQVLINLISNAIKFTSEGEVSVAVGISPETQAIKISVRDTGIGIPVDRRHR 344 Query: 166 ------QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q V + L R+ E + + Sbjct: 345 LFKSFSQAHHAEVTREYTGTGLGLSICKQLTELMNGRIWLEETSGEGACFTFTIP 399 >gi|298249355|ref|ZP_06973159.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547359|gb|EFH81226.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 554 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 59/214 (27%), Gaps = 22/214 (10%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQ--------------LIRLSSMSAIIRLKFMR 68 H++ +P+ A+ +L+ + + + L RL + Sbjct: 338 SHELRNPLAALKMQTQLVRKRLEKQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAG 397 Query: 69 LAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 VD L ++ + + V+ + I ++ NL A Sbjct: 398 KLEYLQEPVDLEALLHEVADTMQQISTTHAVVVRGAAPCTLIGDKGRLEQVFTNLISNAI 457 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDI 181 P V I + S + +G E+ +I + + I + Sbjct: 458 KYSPDAKTVEIDLDASPEMVTIRVHDHGPGI-PREQRDKIFERFYRVADPNQKAIPGLGM 516 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Y V + + + + + L + Sbjct: 517 GLYIVAEIVKRHGGTITVDSEVGKGSTFTVTLPR 550 >gi|158523282|ref|YP_001531152.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512108|gb|ABW69075.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 962 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 62/241 (25%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 M+ V L + HD + + I EL + + + Sbjct: 582 STQLLQAQKMESVGRLAGGVAHDFNNMLSVILGYTELAMHRVPPHDPLYEDLREILSAAK 641 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 SS L F R +D + ++ +++ I D + + ++ + Sbjct: 642 RSSEITRQLLAFARKQTSSPKVIDLSDTVENMLKMLRRLIGEDIDLAWNPGPGLWTVNMD 701 Query: 115 RAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGN 156 A+I L + + + + + + ++ +G Sbjct: 702 PAQISQILANLLVNARDAIGGVGKVTIETGNVSFDQDYCEDHNEFLPGDYVVLAVSDDGC 761 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + V + +N + L Sbjct: 762 GMDRKTR-DRLFEPFFTTKEVGKGTGLGLATVYGIVSQNNGFINVYSEPGQGTTFRIYLP 820 Query: 215 K 215 + Sbjct: 821 R 821 >gi|115376297|ref|ZP_01463537.1| PilS2 [Stigmatella aurantiaca DW4/3-1] gi|115366722|gb|EAU65717.1| PilS2 [Stigmatella aurantiaca DW4/3-1] Length = 321 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + V L + + H++ +P+ I L L E+ + Sbjct: 97 AQTELVAVERLATVGRLAAGVAHEVGNPLAGILGYLSLARMRATTPELKDFLDRIDHEVH 156 Query: 62 IRLKFMR-------LAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDL 111 +R G VD +++ + V+ + Sbjct: 157 RIDGIVRGLLDLGRPRSGPLAPVDMGQVAETCVRLVSAGPELSRVEVSFALEPGLLARAD 216 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++I++NL + A ++ G V +S + E +++ G E ++ + Sbjct: 217 PGPLSQIVINLLLNAAQAMGGEGAVRVSTRREGGEVWLAVEDGGPGL-SAEVMARLFEPF 275 Query: 172 VESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + LA RL+ E I + L Sbjct: 276 FTTKDGKGTGLGLAVSLHLAQGMGGRLVAENIPAGGARFTLCL 318 >gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 775 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 22/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + SR+ H++ +P+ +I +LL+ + Q+ + Sbjct: 394 AREEAERASRAK--SEFLSRMSHELRTPLNSILGFAQLLEMDSPASQRPQVGHILRAGQH 451 Query: 62 IR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTG 106 + V L + ++ A Q+ Sbjct: 452 LLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMAADGNIELPALPQLPDEL 511 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++LLNL A G+V I V+ S S+ +G+ PE Q Sbjct: 512 GVVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQSAERVAVSVVDSGHGI-APELIDQ 570 Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +++ + + L + + L Sbjct: 571 LFKPFERLNADPSVEGTGLGLALSKSMLEMMHGTLSVHSVPGEGSRFTLELP 622 >gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM 319] gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM 319] Length = 590 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 23/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +PI + E + + ++ + S + + + LA Sbjct: 372 ANVSHELRTPISMLQGYSEAIIDDIASTDEEKKEIAQVIYDESLRMGRLVNELLDLARME 431 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERAKILLN 121 G V + + + E + + + +V E + S ++L N Sbjct: 432 AGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKVEDEFEAMIDSDRMEQVLTN 491 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176 L A G+V + + S++E S++ G + F + + Sbjct: 492 LIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKEDLPFVFERFYKADKARTRGK 551 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ + E + L K Sbjct: 552 SGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590 >gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341] gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341] Length = 569 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 64/235 (27%), Gaps = 25/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + + + + H++ +P+ A+ +++L + L ++ + + Sbjct: 198 LAQKFAEQANQSK--SNFLAMMSHELRTPLNAVLGLIDVLRGDSTSYQAELLEQMENSAE 255 Query: 61 IIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ + + + + E IA + + ++ Sbjct: 256 LLLIIINDVLDLSRIESGHFSLHCHWVDLKKKLDQSLVYHRQIAQEKGIAFNVQTHINER 315 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E S +IL N+ A G + + ++ F +K G Sbjct: 316 LEYYTDSARLTQILFNIVGNAIKFTKSGQVDIDLIYGT-HQVTFRVKDTGIGIEKNRI-D 373 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + E + + Sbjct: 374 RLFTPFIQADNSITRNYGGTGLGLAITKHLIELMGGSIQVESELEVGTTFILQVP 428 >gi|256829865|ref|YP_003158593.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579041|gb|ACU90177.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 534 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + L + + + H++ SP+ +I L+ L + + + Sbjct: 294 TSELALANEELKTLDRLKSEFLATMSHELRSPLTSIRGGLDYLRRTETSADRQDYLHIMD 353 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------S 103 + + F T I + + + + S Sbjct: 354 KNVSRLTHLVTDIFDITRIEAEKIDWNFGPADMTELVGEIVEIMSPLAEERGLRLGLLSS 413 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++++NL A P GG ++ ++Q+ E ++ G ++ Sbjct: 414 GPMIALADVERIEQVIVNLTDNAIKYSPDGGVISFTLQNEGGEIRILVRDQGPGIPPGDR 473 Query: 164 FTQIVDGNVESTIDSHDIQF-------YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + R+ E V + L Sbjct: 474 -QAIFKKFHTAPSSGTGGKPGGTGLGLAICSQIVRAHGGRIWVEDNPGGGSVFTFTLP 530 >gi|205375080|ref|ZP_03227871.1| histidine kinase [Bacillus coahuilensis m4-4] Length = 343 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 26/241 (10%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----------- 45 M+ + + S L L + + HD+ +P+ +I + +E L + + Sbjct: 102 MSSRVKEMIDDVKESERLKTELIANVSHDLRTPVASIRSHVEALIDQILTDEKTREQYLS 161 Query: 46 ----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKR 99 E + + + + VD + L E++ E Sbjct: 162 TIKQESVKLSELLEEVLQLSQLERGSVPFHPERTKVDELLVSVLSSFERMAEKKGIEFVV 221 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++ ++L NL A G +TI V+DS IF + G Sbjct: 222 QIDEREDSILIVPQQIHRVLSNLIENAIRYSNNGRTITIIVEDSGRATIFRVTDEGEGIP 281 Query: 160 FPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F E F + + + + + + + Sbjct: 282 FEEQKNIFDRFYRVEKSRNQAYGGSGLGLAICKEFVTLHGGEIGVKSVKGWGSEFWFTIP 341 Query: 215 K 215 K Sbjct: 342 K 342 >gi|197119238|ref|YP_002139665.1| PAS/PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088598|gb|ACH39869.1| sensor histidine kinase response regulator, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 853 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 61/243 (25%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 + + F M+ + L + HD + + I S +L E + ++ I + Sbjct: 473 LLQAQLFQSQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQA 532 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + + + + L + ++ + + Sbjct: 533 GKRSSQITRQLLAFSRKEIIAPREVNLNEHFTEMQKTLGRLIGEDIRMNFNPEPGLWTID 592 Query: 114 ----ERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKIN 154 + +IL+NL + A ++ GG ++ N Sbjct: 593 ADTTQLDQILVNLAVNARDAMGNGGVLTIETANVRVDGSYSQFHLDASLGEYVQLAVSDN 652 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E QI + + + V + ++ + Sbjct: 653 GCGM-DRETLAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQIN 711 Query: 213 LEK 215 + Sbjct: 712 FPR 714 >gi|159901279|ref|YP_001547526.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894318|gb|ABX07398.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 810 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + S L + + HD+ +P+ I N L+LL + + +L+ + S+ Sbjct: 575 LQTEHQQLQRSEQLREQMNQMVVHDLKNPLTVIINYLDLLRRQALPESQRELVEGARRSS 634 Query: 61 IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 M + + L + + + + A +Q Sbjct: 635 RTLVGLVSDLLDTARLQEGHMSINREHVPIAPLLHNVANELRSWAEQEAKIISIQADPEL 694 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP----- 161 ++L NL A P ++ + + ++ F + NG Sbjct: 695 YATIDGDLMRRVLSNLLSNAIKHTPIQTEIKLIAYQADSQITFQVADNGPGIPEALQASL 754 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I++ + S + Y+ L ++ + + + + Sbjct: 755 FDRFTILNEQNHTRQRSTGLGLYFCKLAVEAHEGEIGVVSNSTTGTIFTITMP 807 >gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297] gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297] Length = 767 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 66/238 (27%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + ++I H+I +P+ + +++LLD+ +++E + I S Sbjct: 385 LREERQKQQLKAEAQSYFLAQISHEIRTPLNGVLGTVDLLDQTQLDEEQKKYIETIQSSG 444 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQVSW 104 L + Y+ + + + + I+D + + Sbjct: 445 KSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQDLFRHQVELFRAQANQKSLNFKLTIDPNV 504 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161 + ++ +I NL A +G V + ++ ++ G Sbjct: 505 PEWILSDAQRIRQIATNLISNAIKFTDQGQVVVSLSSTRRNGHPYLSIQVRDTGIGIASH 564 Query: 162 EKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + L + + + + L Sbjct: 565 EIAHLFDAYQQVDVGKRRVYGGTGLGLAISQQLVDLLGGTITVQSQQNQGSEFTVQLP 622 >gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 569 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 17/235 (7%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + + + + H++ +P+ ++ L++L + + + L+ SA Sbjct: 198 LAREESERANRAK--SEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAGHINLLSHMESSA 255 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ +++ Sbjct: 256 GLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELSIELDD 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++L NL A +G ++ S+ G + Sbjct: 316 KRHYWLDPSRLSQVLFNLIGNAVKFTQQGQIDIRVNLENDE-LSISVIDTGIGIEKDKIS 374 Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D ++ + L + + Sbjct: 375 SLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKIP 429 >gi|295087713|emb|CBK69236.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. [Bacteroides xylanisolvens XB1A] Length = 754 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44 K+ L + L+A + + H+I +P+ +I +L Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSAEREEYI 572 Query: 45 -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +++LI + I +M +F + + + QV+ + Sbjct: 573 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 632 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 E ++L N A K+ S + ++ G Sbjct: 633 EVDDTPLEINVDRERLIQVLTNFLNNAGKFTETGYIKLGYSYLPDEGNVQIYVEDTGRGI 692 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + ++ + ++ + + +L Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 749 >gi|254994917|ref|ZP_05277107.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Mississippi] Length = 764 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 72/251 (28%), Gaps = 38/251 (15%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIR-- 54 K++ L S L A+ L I HD + + AI +LL + +++ Sbjct: 422 RKSLETQLEQSQKLQAIGQLAGGIAHDFNNILTAIIGFCDLLLIQHPATDPSFRDIMQIK 481 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + F R +D + D+ Q+I+ I+ D +++ + Sbjct: 482 QNANRATNLIKQLMAFSRKQTLQPKILDINNIVADLSQMIKRLISEDIELKIYYDKNIGL 541 Query: 111 LSRERAKILLNLFM---VAHASLPR---------------------GGKVTISVQDSKNE 146 + + ++ + A +++ + Sbjct: 542 VKVDLCQLEQVIVNLVVNAKSAMNSGGVLTLRTYNLQVDASTIPKGMFVPDKDQVEHGEY 601 Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD 204 + + G+ + +I D + + + V + + + Sbjct: 602 VVLEVIDTGHGM-DKQIIKKIFDPFFSTKSESYGTGLGLSTVYGIVKQTGGYVYVHSKVG 660 Query: 205 HNVVLSALLEK 215 LL + Sbjct: 661 EGTKFMILLPR 671 >gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 977 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 61/237 (25%), Gaps = 30/237 (12%) Query: 6 CFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 L + L + + H+I +P+ A+ LL+ + DE +L R S Sbjct: 567 QARLEAERLAQSKGEFLANMSHEIRTPMNAVLGLAYLLERQPLPDEAHELARQIHRSGQS 626 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------------QVSWTG 106 L + ++ I + I + + + + Sbjct: 627 LLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLES 686 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPE 162 + +IL+NL A G ++ F+++ G PE Sbjct: 687 SLVGDPLRLGQILINLTSNAVKFTSDGQVEVRVESIARSHTEVTLRFTVRDTGIGI-DPE 745 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + LA RL + + L Sbjct: 746 TQAHLFQPFTQADASTTRRFGGSGLGLVICRRLAELMGGRLGLDSVPGEGSTFWLEL 802 >gi|228970525|ref|ZP_04131176.1| hypothetical protein bthur0003_3170 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789257|gb|EEM37185.1| hypothetical protein bthur0003_3170 [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 402 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 183 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 237 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 238 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHIQVDGNLPAINGD 297 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G +K +I Sbjct: 298 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENDKLEKIGKA 356 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 357 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 400 >gi|199597242|ref|ZP_03210673.1| Signal transduction histidine kinase [Lactobacillus rhamnosus HN001] gi|199591758|gb|EDY99833.1| Signal transduction histidine kinase [Lactobacillus rhamnosus HN001] Length = 555 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 21/225 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + H++ +P+ AI E L ++ D+ +++I S + Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLI 383 Query: 65 KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + V ++ + + R+ Sbjct: 384 NDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKL 443 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I+ NL A G VTI+ Q + ++ G E +I + Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETE-QARIFERFYRVD 502 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L ++ + L Sbjct: 503 KARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547 >gi|163857757|ref|YP_001632055.1| two-component hybrid sensor and regulator [Bordetella petrii DSM 12804] gi|163261485|emb|CAP43787.1| two-component hybrid sensor and regulator [Bordetella petrii] Length = 533 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 27/231 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAI 61 ++ + LL + HD + + I S ELL + G+ D Q ++ Sbjct: 163 QKLEALGLLTGGVAHDFNNLLMVIRGSAELLRQPGLSDSKRQQYIDAISSTSDRAAHLTR 222 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L + R + D + ++ + + + +R ++ Sbjct: 223 QLLAYARKQPLRPATFDVRSCIEGMQDLFHATTGSSIEIAYDLAPTPCYVHVDRNQLETC 282 Query: 122 LFM---VAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++P + ++ G PE Sbjct: 283 ILNIIINARDAMPAGGTLTITVSAVDTVPATRHHGPAHRPHVAITIADTGLGI-APEVID 341 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V +++ + D + + LE Sbjct: 342 RVFEPFFTTKEPGRGTGLGLSQVFGFINQSGGHVDVASTPDSGTMFTLYLE 392 >gi|297584934|ref|YP_003700714.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297143391|gb|ADI00149.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 475 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/216 (9%), Positives = 56/216 (25%), Gaps = 21/216 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + HD+ +P+ ++ ELL + + +K + F T + Sbjct: 250 NVSHDLKTPLASVQGYAELLKDNQLSQADQHRYAEVIERQSRYMKELIDDFHLTMKLRHQ 309 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEK------------IDLSRERAKILLNLFMVAHA 128 E V + + +QV + + M Sbjct: 310 ELPLSFESVAIEGFVRELVIQVLNEPRFEEADITFHSDASDICWQIDRHLYFRAVMNLLR 369 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYY 185 + +S++ + + + + G + F + G + + Sbjct: 370 NALVHNDDDVSIKVNVHSDRIEISDTGKGITRENQEQIFERYYKGTNTEDGEGSGLGMAI 429 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA------LLEK 215 + + + + + ++ L+K Sbjct: 430 ARDIIESHGGSVDLDSEEGMGTTITIFKGSQETLKK 465 >gi|157147983|ref|YP_001455302.1| hypothetical protein CKO_03790 [Citrobacter koseri ATCC BAA-895] gi|157085188|gb|ABV14866.1| hypothetical protein CKO_03790 [Citrobacter koseri ATCC BAA-895] Length = 760 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL+ + + ++ Sbjct: 390 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVSPDSPDAPRITRALKAAERGAL 449 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + SV+ L ++ +++ + +++ + +++ Sbjct: 450 LTQRLLAFSRKQSLHPHSVELKTLLENLSELMRHSLPATLTLEIEAQSPAWAAWIDVSQL 509 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G E Sbjct: 510 ENAIINLVMNARDAMEGQTGTIKIRTWNQRVTRSDGRRQDMVALEVIDHGCGM-SQEVKA 568 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 569 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 620 >gi|114777041|ref|ZP_01452061.1| PAS/PAC sensor signal transduction histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114552562|gb|EAU55022.1| PAS/PAC sensor signal transduction histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 711 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 60/223 (26%), Gaps = 13/223 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS------ 57 + A + R+ H+I +P+ I S E L + + Sbjct: 484 SELAEAQRNKAWAEVARRLAHEIKNPLTPIKLSAERLQRRFRVQVDNHQVFDACTQAIIA 543 Query: 58 --MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + Q + D ++V+V + + Sbjct: 544 QVERLQRLIADFSTLARMPQPKIREVPVNVLLQEMNDLFHGYRQVEVRFCDPHWQCPCDP 603 Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ L A ++ + + S + + ++ +G+ ++ + Sbjct: 604 DQVRQVLINLMDNAVSASSDKVAIRLYAVLSDHWVEWHVEDDGDGIEEAAVS-RLFEAYY 662 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A ++ LL L + Sbjct: 663 STKASGSGLGLAIAKRIAEDHHGELLLVSAA-APTHFCLRLPR 704 >gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 574 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 17/235 (7%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + + + + H++ +P+ ++ L++L + + + L+ SA Sbjct: 203 LAREESERANRAK--SEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAGHINLLSHMESSA 260 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ +++ Sbjct: 261 GLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELSIELDD 320 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++L NL A +G ++ S+ G + Sbjct: 321 KRHYWLDPSRLSQVLFNLIGNAVKFTQQGQIDIRVNLENDE-LSISVIDTGIGIEKDKIS 379 Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D ++ + L + + Sbjct: 380 SLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKIP 434 >gi|56416709|ref|YP_153783.1| sensory box histidine kinase/response regulator [Anaplasma marginale str. St. Maries] gi|222475075|ref|YP_002563490.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Florida] gi|255003053|ref|ZP_05278017.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Puerto Rico] gi|255004176|ref|ZP_05278977.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Virginia] gi|56387941|gb|AAV86528.1| sensory box histidine kinase/response regulator [Anaplasma marginale str. St. Maries] gi|222419211|gb|ACM49234.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma marginale str. Florida] Length = 827 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 72/251 (28%), Gaps = 38/251 (15%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIR-- 54 K++ L S L A+ L I HD + + AI +LL + +++ Sbjct: 422 RKSLETQLEQSQKLQAIGQLAGGIAHDFNNILTAIIGFCDLLLIQHPATDPSFRDIMQIK 481 Query: 55 ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ + F R +D + D+ Q+I+ I+ D +++ + Sbjct: 482 QNANRATNLIKQLMAFSRKQTLQPKILDINNIVADLSQMIKRLISEDIELKIYYDKNIGL 541 Query: 111 LSRERAKILLNLFM---VAHASLPR---------------------GGKVTISVQDSKNE 146 + + ++ + A +++ + Sbjct: 542 VKVDLCQLEQVIVNLVVNAKSAMNSGGVLTLRTYNLQVDASTIPKGMFVPDKDQVEHGEY 601 Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD 204 + + G+ + +I D + + + V + + + Sbjct: 602 VVLEVIDTGHGM-DKQIIKKIFDPFFSTKSESYGTGLGLSTVYGIVKQTGGYVYVHSKVG 660 Query: 205 HNVVLSALLEK 215 LL + Sbjct: 661 EGTKFMILLPR 671 >gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 569 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 17/235 (7%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + + + + H++ +P+ ++ L++L + + + L+ SA Sbjct: 198 LAREESERANRAK--SEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAGHINLLSHMESSA 255 Query: 61 IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + + + + ++ +++ Sbjct: 256 GLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELSIELDD 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +++L NL A +G ++ S+ G + Sbjct: 316 KRHYWLDPSRLSQVLFNLIGNAVKFTQQGQIDIRVNLENDE-LSISVIDTGIGIEKDKIS 374 Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D ++ + L + + Sbjct: 375 SLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKIP 429 >gi|65319272|ref|ZP_00392231.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] Length = 293 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 59 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G+ + Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 235 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 288 >gi|261856651|ref|YP_003263934.1| integral membrane sensor signal transduction histidine kinase [Halothiobacillus neapolitanus c2] gi|261837120|gb|ACX96887.1| integral membrane sensor signal transduction histidine kinase [Halothiobacillus neapolitanus c2] Length = 653 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 L L ++ + + I H+I +P+ I LL+ ++ L + Sbjct: 414 QTAERQMLQQAKLASIGEMAAGIGHEINNPLNNILTLTRLLERQLPPEKTELRTDLEDLR 473 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------KRVQVSWTG 106 A + + +D + Sbjct: 474 AEALRVGHIVRGVMNFARQLPPDHQPTPITQWLLDLIDRLQPEAMEADVFLNLLLDDQDC 533 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++LNL A + P G++TI+ + + + NG PE + Sbjct: 534 VASFDPNQIGQVVLNLVRNAIHASPPMGEITITARSKPDSFEIEVLDNGKGI-EPEALDK 592 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215 + D + + + + + L E D V L + Sbjct: 593 VFDPFFTTKSVDKGTGLGLSISLGIVQYHGGTLEIENRQDRSGVRAFMSLPR 644 >gi|224372018|ref|YP_002606183.1| putative sensorkinase/phosphatase protein [Desulfobacterium autotrophicum HRM2] gi|223694737|gb|ACN18019.1| putative sensorkinase/phosphatase protein [Desulfobacterium autotrophicum HRM2] Length = 875 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 63/244 (25%), Gaps = 32/244 (13%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 KN+ F + + + ++ L I HD + + I E+L E + Sbjct: 485 RKNLEFQVQQAQKMESIGNLAGGIAHDFNNLLYPIIGFAEMLIEDLPPKSPEHESAQAIF 544 Query: 57 ------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 L F R V L ++ ++ I D + + Sbjct: 545 NAGKRGCELVKQILAFSRQVDHQLSPVRFQKILAEVFKLTRSTIPSDIEIYQDIQKDCGL 604 Query: 109 -IDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLK 152 + + +I +NL A+ + + + S+ Sbjct: 605 VMAEETQLHQIAMNLITNAYHAVEKTGGKISVQLKEITLDNDDLKDRPLQVGQYVMLSVS 664 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 NG E I D + + V + E+K + + Sbjct: 665 DNGVGI-PREIMNNIFDPYFTTKEQGKGTGLGLAVVYGILREHKGDVKVYSEVGKGTTFN 723 Query: 211 ALLE 214 L Sbjct: 724 VYLP 727 >gi|224370951|ref|YP_002605115.1| cold-shock inducible two-component sensory box histidine kinase /regulatory protein (Ntr family protein) [Desulfobacterium autotrophicum HRM2] gi|223693668|gb|ACN16951.1| cold-shock inducible two-component sensory box histidine kinase /regulatory protein (Ntr family protein) [Desulfobacterium autotrophicum HRM2] Length = 1036 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------L 52 M K + M+ + LL I HD + + I ++L E EDE++Q Sbjct: 647 MEKKLYQA-QKMEAIGLLAGGIAHDFNNILSPIIGYTQILLEENSEDELLQSSLDEILTA 705 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---I 109 + L F R + + + ++I I + + + Sbjct: 706 SMRAKELVKQILTFSRQGSDEMRPLKVQSIVKETLKLIRSSIPKSIEIVENIQTDCGLIK 765 Query: 110 DLSRERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKIN 154 +IL+NL A+ ++ + T + S+ N Sbjct: 766 ADPTHIHQILMNLTTNAYHAMEEIGGKIEIKVQEIILEGNERTGVSFWPGKYVLMSITDN 825 Query: 155 GNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G + + + + E + + + L Sbjct: 826 GCGIPLSCRDKIFEPYFTTKEKHKGTGLGLSILYGIVKECRGYIDFSSEVGKGTTFNVYL 885 Query: 214 E 214 Sbjct: 886 P 886 >gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328] gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328] Length = 728 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 44/257 (17%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + ++ + L + + + H++ +P+ ++ +LL + + ++ Sbjct: 311 LRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQFIE 370 Query: 58 MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S L SVD + ++++ + Sbjct: 371 KSGWHLLHLINDILDLSKIESGKTELNLESVDIHELCSECLKMVQPRADKKCLALSLESD 430 Query: 107 EKIDLSR----ERAKILLNLFMVAHASLP-------------------RGGKVTISVQDS 143 +I +I++NL A P + DS Sbjct: 431 YRITQVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAYGSQIEGDYRPDCSPINDS 490 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRL 197 ++ +G +++ + + + LA + + Sbjct: 491 TPYLCLEVQDSGIGI-PQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGTV 549 Query: 198 LPEIIDDHNVVLSALLE 214 + + L Sbjct: 550 SLQSQVNQGSRFRVWLP 566 >gi|168703719|ref|ZP_02735996.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 902 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 65/245 (26%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55 + L S L +L L I HD + + A+ L L E M+ I Sbjct: 517 QRYERQLLQSQKLESLGVLAGGIAHDFNNLLTAVLGYASLSRMRLPPNDPIAEDMKRIES 576 Query: 56 SSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ A + M +VD ++ Q++ ++ ++ + T + Sbjct: 577 AAQRAAELCQQMLAYAGRGQFVVRAVDLNALTQEMTQLLGAVLSKKAVLKYNLTIGLPQV 636 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ----------------------DSKNENIF 149 + ++ + + + G + + D Sbjct: 637 QADPTQLRQIVMNLITNASDAIGPKSGVITLTTGLIDADARYLTEIQAGAELDPGRYVYL 696 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + G E +I D + + V + +K + Sbjct: 697 EVSDTGCGM-SEEVRAKIFDPFFTTKFTGRGLGLAAVQGIVRAHKGAIKVYTQSGKGTTF 755 Query: 210 SALLE 214 LL Sbjct: 756 KVLLP 760 >gi|218782540|ref|YP_002433858.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763924|gb|ACL06390.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 934 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 63/243 (25%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRL---- 55 + ++ M+ V L I HD + + AI E +L E + + + Sbjct: 521 LLESQLRQSQKMEAVGTLAGGIAHDFNNILSAIMAYTEAMLMEPDDRTKNVTRLENVKKA 580 Query: 56 ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R V + +++ + ++Q + Sbjct: 581 SLRARELIRQILTFSRNTEHKKTPVSLPFITREALKLLRASLPSTIKIQYRAEENMGRVM 640 Query: 113 RER---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKI 153 + ++L+NL A ++ + S+ Sbjct: 641 ADPTQIHQVLMNLCGNAEHAMRKNGGVLDVSLDTVFLPPGEAAPHVNLSPGRYIRLSVAD 700 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G P+ +I D + + + V + + + E Sbjct: 701 TGQGM-SPDVKKRIFDPYYTTKEKGEGTGLGLAVVHGIVEAGQGAVTVESEVGRGACFRV 759 Query: 212 LLE 214 L Sbjct: 760 YLP 762 >gi|152972966|ref|YP_001338112.1| putative histidine protein kinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957815|gb|ABR79845.1| putative histidine protein kinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 761 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L M V L + HD + + I SLEL++ + + ++ Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446 Query: 59 S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R + +V L ++ +++ + +++ + Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506 Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL M A ++ +VT S ++ + +G+ Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V ++ R+ E + L + Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621 >gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] Length = 988 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 485 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 544 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 545 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 604 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 605 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 664 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 665 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 724 Query: 208 VLSALLE 214 ++ L Sbjct: 725 TVTVALP 731 >gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 782 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 53/239 (22%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + L + + H+I +P+ + ELL++ + DE S Sbjct: 210 ARERAEAANRAKSAFL--ANMSHEIRTPMNGVVGMAELLNDTTLSDEQKLYANTIKNSGE 267 Query: 62 IRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + Y+ + + + V + Sbjct: 268 ALLVIINDVLDYSKIEADKLVLHEEVFDLERCIHEIVMLLQPTARDKGLTILVDYDLFLP 327 Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARF 160 ++L NL A G S ++ G Sbjct: 328 TQFVGDPGRIRQVLTNLAGNAVKFTNEGHVTLRVTGISNPEEGTCAVHCMIEDTGIGIPV 387 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + N + + L K + E + + Sbjct: 388 EKIDHVFGEFNQVEDERNRKFEGTGLGLAISRRLIELMKGEIWVESDEGKGSCFGFRIP 446 >gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1491 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 71/245 (28%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLV-ALLC-----SRICHDIISPIGAIH----NSLELLDEV--GIEDEV 49 + + ++ +L A+ + + H++ +P+ AI LE L + Sbjct: 964 ERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNAILALSEGMLEQLRGPLNERQIAA 1023 Query: 50 MQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRV 100 ++ I S + + L+ G +D I + + E +++ Sbjct: 1024 LRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQILVSDVCAASMIFIKEQASKKQQKI 1083 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-----FSLKING 155 + + ++ ++ L + ++ K + ++ G Sbjct: 1084 NLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVGGQIDLIVKADASQGVLAITVADTG 1143 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E+ ++ + + + V LA + + E Sbjct: 1144 IGI-SDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALVRRLAELHGGSVSLESTPGVGSRF 1202 Query: 210 SALLE 214 + LL Sbjct: 1203 TILLP 1207 >gi|301064573|ref|ZP_07204969.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300441321|gb|EFK05690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 485 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 73/240 (30%), Gaps = 30/240 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 M++ + L M + S + H++ +P+ I + +L + + +L+ ++ Sbjct: 248 MSERLQ-ELDEMKI--DFISHVSHELRTPLTVIKEATGMLLDGTYADSRESQQELLTITQ 304 Query: 58 MSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + L+ ++ + + +I++ + + + + Sbjct: 305 QECDRLIDSVNRILDLSRMEAKMMEYVFVPCQLSPLIQETVLKLAPIAIREEIRLQLKLQ 364 Query: 114 ER-----------AKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLAR 159 + ++L NL A +G V++ ++ ++ S+ G + Sbjct: 365 DHLPLVKMDEARIKQVLENLISNALKFSSKGDTVSVRTAVQRNGQDCIQISVADTGTGIQ 424 Query: 160 FPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + E+ + E L Sbjct: 425 -KENLERIFDRFKRIERGKETARGTGLGLSIAKHIVTEHGGNIWAESAPGRGSTFFFTLP 483 >gi|294672858|ref|YP_003573474.1| sensory box histidine kinase [Prevotella ruminicola 23] gi|294473160|gb|ADE82549.1| sensory box histidine kinase [Prevotella ruminicola 23] Length = 914 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + S + A + + H+I +P+ AI +LL +E E +++IR + Sbjct: 684 LKDETQRAEESGKMKAAFLANMTHEIRTPLNAIVGFSDLLPVVEEHSERMEFIRIIRNNC 743 Query: 58 MSAIIRLKFMRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + A VD DI Q + + + + + Sbjct: 744 DMLMRLINDILEASNVGQALAIQPEQVDFAKVFDDICQTLAQRVDEAGVLFIKDNPYETF 803 Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L N A G + + ++ F + G ++ Sbjct: 804 PATLDKGRIQQVLTNFTTNAIKYT-HEGHIKVGYREQDGGIYFYCEDTGAGIPKDKQAAV 862 Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 + + +A + ++ E + H + + Sbjct: 863 FERFVKLNDFVQGTGLGLSICKAIAERCEGKIGVESEGEGHGSTFWMWIPR 913 >gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961] gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10] gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961] gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10] Length = 1020 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 493 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 552 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + ++ + T Sbjct: 553 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 612 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 613 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 672 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 673 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 726 >gi|89069857|ref|ZP_01157191.1| C4-dicarboxylate transport sensor protein DctB, putative [Oceanicola granulosus HTCC2516] gi|89044533|gb|EAR50652.1| C4-dicarboxylate transport sensor protein DctB, putative [Oceanicola granulosus HTCC2516] Length = 569 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 26/237 (10%) Query: 1 MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDE 48 M K++ S L AL + + + H++ P+ A+ L LL Sbjct: 324 MEKSLEVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMRTYLAGARLLLNRRRTEEALA 383 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVS 103 Q I K ++ + + + + Sbjct: 384 SFQRIDDLIERMGAITKQLKSYARKGAEQFEPVDARAAVLSALSMMEPQLKQRTVDITRT 443 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLAR 159 + + + +R ++ + + +L D +++ NG Sbjct: 444 LPSDPVLILGDRLRLEQVIINLLRNALDATKSAEDPQIDILLAAGETVRLTVRDNGPGI- 502 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + D + + + RL D V L Sbjct: 503 --EDLDALFEPFYTTKQPGDGVGLGLAISSGIVTDFGGRLTARNAVDGGAVFEVRLP 557 >gi|317484882|ref|ZP_07943772.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316923864|gb|EFV45060.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 603 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 60/232 (25%), Gaps = 31/232 (13%) Query: 13 DLVALL------CSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSS 57 ++ L+ + + H++ +P+ AI E L + ED +++ + Sbjct: 364 EMARLMRVRKEFVANVSHELRTPLTAIAGYAETLRDSAAEDPSICAKFAETILRNAQHMG 423 Query: 58 MSAIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 LK R + + L + Q + + Sbjct: 424 TMVEDLLKLSRIESGAVPMEMETVKAASILSDVTTACQPQTAAHNLTLETDIDPALTVRA 483 Query: 111 LSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 ++ NL A + + E +F + +G + Sbjct: 484 DPHFIGQVFRNLIENACRYAPEGSTIKVSGGKRLDHNGLPEALFMICDDGPGIPQADIAR 543 Query: 164 -FTQIVDGNVESTIDS-HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + + + + + + R+ E + + L Sbjct: 544 VFERFYRVEKHRSSPASTGLGLAICKHIVERHGGRIWAEPGPGGCLQFTLPL 595 >gi|325678736|ref|ZP_08158343.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324109562|gb|EGC03771.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 373 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + L A + I HD+ +P+ +I + + L E + + Sbjct: 132 KEEAALLAQNEQLRANMLRSISHDLRTPLTSISGNASTLLSGGDTLYESARQQIYTDIYS 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105 S + + G + I + ++ ++++ + +R + Sbjct: 192 ESMWLIGMVENLLYATRIEDGRMQLNISVEILDDIVQEAVRHTERTHSKRNIIVDMLDEI 251 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++++NL A VT++V+ + S+ +G E+ Sbjct: 252 IPVMADANLIVQVIVNLMDNAVKYSDENSDVTVTVRRENEYAVISVSDHGTGI-SDEEKE 310 Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D S + + + + + V+S L Sbjct: 311 KVFDMFYTGGSRSSDSRRSLGLGLALCRSIITSHGGTISVSDNIPNGTVVSFTLP 365 >gi|282165286|ref|YP_003357671.1| putative histidine kinase [Methanocella paludicola SANAE] gi|282157600|dbj|BAI62688.1| putative histidine kinase [Methanocella paludicola SANAE] Length = 589 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 23/217 (10%) Query: 22 ICHDIISPIGAIHNSLELL----------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 I H++ +P+ I ELL + V + + + + L Sbjct: 360 ISHELRNPLAIIKGYTELLYDGTLGPINDKQKDKLARVRENVDKLADMVGKMSEISSLES 419 Query: 72 GYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLF 123 + LGD+ + F + V + + ++LLNL Sbjct: 420 RKYTVDRVPVSLGDMVSEIAETMGFLFQNKRITLNVDIPENLPLVEVDRKKMEQVLLNLL 479 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----TIDS 178 A P GG VT++ +D + + S+ G + Sbjct: 480 NNALKYTPEGGHVTVTAEDRPADILVSVWDTGIGIPQKDLDKIFSGFYHSGYKLSYEYKG 539 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ + + K Sbjct: 540 PGLGLAISRKIIEGHGGRIWAKSEVGKGSTFYFTIPK 576 >gi|254410720|ref|ZP_05024498.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182075|gb|EDX77061.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 539 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50 + + + L+ L + + + + H+ +P+ I +S E+L + Sbjct: 295 LEEELRVALARERELSQLKSRIVATVSHEYRTPLTTILSSTEMLQRYSDRLTPEKKQTHF 354 Query: 51 QLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 Q ++ S + + + + + + + Sbjct: 355 QRVKQSVEHLTNLVNDMIFIEQAETQALEFNPTLVNIEEIVGEVIEAVRPKSAGKHSLNL 414 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + S + IL NL A P GG + + + E + G Sbjct: 415 ICPSECDRVVLDGNLLRLILDNLLSNAIKYSPEGGLIEVEISPQAQEIRLRVADEGIGIP 474 Query: 160 FPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ S I + V ++ R+ E + +L Sbjct: 475 PDDQGKLFKAFYRASNIGITPGVGLGLVIVKECVELHQGRVEVESEVGAGTTFTIILP 532 >gi|124266107|ref|YP_001020111.1| signal transduction histidine kinase [Methylibium petroleiphilum PM1] gi|124258882|gb|ABM93876.1| signal transduction histidine kinase [Methylibium petroleiphilum PM1] Length = 343 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 76/232 (32%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + +L + L AL + + +CH+I +P+ ++H+ +++L + Sbjct: 110 LRQLQTSDLQTARLAALGFMVAGVCHEITNPLTSLHSIVQILRSEKQPSPALLDKGFDNI 169 Query: 51 -----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 +++ +S +G+ L + Q + ++ Sbjct: 170 AVNVKRILDISRRLVKFSRVGDEPRYGFAVDEAIEEALYVLRQDDLLRDVELQYLRRDAG 229 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + + +I LNLF+ A ++ G + I +++ + G E Sbjct: 230 LKVFGNTGQIREIFLNLFVNAAQAMAGRGTLRIETREAGPMVEVLVGDTGPGV-PAEAVG 288 Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + +AHE+ L L + Sbjct: 289 RIFEPFFTTKSSMHGTGLGLAISTEIAHEHGGSLSLRHTGSEGATFCVALPR 340 >gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 404 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 63/254 (24%), Gaps = 40/254 (15%) Query: 1 MAKNICF---NLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47 M N + + +L + + + H+I +P+ + LL + D Sbjct: 144 MESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDLSD 203 Query: 48 EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------- 93 E ++ S + + + G ++ ++I++ Sbjct: 204 EQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAA 263 Query: 94 --IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKN 145 I + V ++LLNL A GG Sbjct: 264 QNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHC 323 Query: 146 ENIFSLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPE 200 F++K +G + F + + + L + E Sbjct: 324 SLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVE 383 Query: 201 IIDDHNVVLSALLE 214 + + Sbjct: 384 SEEGKGSTFWFTVP 397 >gi|89069260|ref|ZP_01156627.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] gi|89045258|gb|EAR51325.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] Length = 460 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 + + +S + S + H++ +P+ +I +L +L+ ++ +L+ ++ Sbjct: 207 LEEAQVRAQASDKSKSEFISTVSHELRTPLTSIKGALAMLESGKFAELDGSAKRLLEMAL 266 Query: 58 MSAIIRLKFMRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQV 102 +A + + + + I+ D + Sbjct: 267 KNAEVLHLLVDDLLDFGKLATGGLEIRPCATDIAGLVQDEVDRIDSYDADRQVECRYTGE 326 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 A+++ NL A P GGKV +SV++ +K G P Sbjct: 327 RGPLFAHADPARIAQVVRNLLSNALKFSPVGGKVFVSVRERCGAIRVEVKDFGCGI-PPC 385 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + R+ L Sbjct: 386 DQERIFEKFTQIDSSNTRQHSGAGLGLAISKEIVEAHDGRIGVTSAPGRGSAFYIDLP 443 >gi|294630228|ref|ZP_06708788.1| sensor histidine kinase TcrS [Streptomyces sp. e14] gi|292833561|gb|EFF91910.1| sensor histidine kinase TcrS [Streptomyces sp. e14] Length = 541 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 20/226 (8%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAII 62 S V + H++ +P+ +I EL + I + + Sbjct: 281 RQQSETRVRQFVADASHELRTPLASIRGYAELTRRGREEVGPDTRHALGRIESEAGRMTL 340 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--------- 113 ++ + L D+ ++ D ++ + Sbjct: 341 LVEDLLLLARLDAGRPLRFEHTDLVPLVVDTVSDARAAGRDHNWRLDLPDEPALVSADAA 400 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG 170 ++L+NL A P G VT V+ + ++ +G P F + G Sbjct: 401 RLQQVLVNLLANARTHTPPGTTVTARVRHAGPWLCVDVQDDGPGIPAELLPRVFERFARG 460 Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + V +A + + + V + L Sbjct: 461 DSARSRATGSTGLGLAIVQAVATAHGGAVTVDSEPGR-TVFTVHLP 505 >gi|269839401|ref|YP_003324093.1| multi-sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269791131|gb|ACZ43271.1| multi-sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 709 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 19/231 (8%), Positives = 60/231 (25%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S ++L + H++ +PI + ++L + E + + + + + Sbjct: 468 RSELLRQIESALELRNQFIATASHELKTPITLLKGYAQVLMDRSREGVLRRPLEIINRQV 527 Query: 61 IIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEK 108 + + + + + +V+ D ++ Sbjct: 528 DRMSELINDLLDVSKIEAGKLELVLRKVELTDAVREVVMDQREAASGFEIELLAAEPVWV 587 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + +++ N A +V + V+ E S+ G ++ Sbjct: 588 LGDRNRLQQVVANFISNAVKYSGNSRRVIVEVRRDGPEVEVSVTDYGIGIPEDQQPEVFG 647 Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + R+ + L Sbjct: 648 LYFRGRNVSPRHYSGLGLGLYICRNIVERHGGRIGMSSREGEGSRFWFRLP 698 >gi|254932175|ref|ZP_05265534.1| sensor histidine kinase [Listeria monocytogenes HPB2262] gi|293583732|gb|EFF95764.1| sensor histidine kinase [Listeria monocytogenes HPB2262] gi|332313012|gb|EGJ26107.1| Sensor histidine kinase [Listeria monocytogenes str. Scott A] Length = 459 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 67/235 (28%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 MA + S + + H++ SP+ ++ LL + E + ++ Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSVTLTEKEQAEYLTVLSEE 284 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + K + + + ++ +K + ++ + Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + + ++ NL A P+GG + + + + ++ +G E + Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I D S + + + + + + L K Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458 >gi|94968841|ref|YP_590889.1| response regulator receiver sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94550891|gb|ABF40815.1| response regulator receiver sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 381 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 + + + + L L + + H+I +P+ ++ N L LL + ++++ + Sbjct: 128 KRAEEALMHNEKIAMLGRLAATVAHEINNPLSSVTNVLYLLSTQPELTNDSRILIEMAQT 187 Query: 56 SSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKI 109 + +D L + + + I V +V + + Sbjct: 188 ELKRVAEISHQTLSFYRESPHAVPIDIAELLEGVLWLFDRQIREKDMVVERRVEYRKKFP 247 Query: 110 DLSRERAKILLNLFMVAHAS------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E + L NL A + + T + F + +G ++ Sbjct: 248 AFPGELRQALCNLVSNAIQAIPPNGRMVLRVHETTRRNTGERGLSFIIADSGGGIAPEDR 307 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214 F + + + + +++ + S L Sbjct: 308 FHIFEPFFSTKGENGTGLGLWVTKGVVEKHRGTIRMRSRQGENSGTTFSIFLP 360 >gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 791 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + SS + + + H+I +P+ AI ELL E + E +L+ + +A Sbjct: 366 LQQARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAESNLSGEQRELLTVQRRAA 425 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SW 104 + L + L D I + D+ + + + + Sbjct: 426 LALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQAIKKNLAFSITLEDDL 485 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 ++++NL A +S Q + FS+ +G Sbjct: 486 PKTYFADRARLRQVMINLVGNAIKFTQQGGVWISVERLSQQGEMVKLKFSVVDSGCGI-P 544 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +QI + + L L E + S +L Sbjct: 545 SEAQSQIFEPFTQADAYVTRHHGGTGLGLTISQRLVQLFGGTLQVESTPNQGSRFSFIL 603 >gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 916 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 58/238 (24%), Gaps = 27/238 (11%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 L + + + + + H+I +P+ I LL + + + SA L Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLSTIEKSADSLL 333 Query: 65 KFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108 + ++ + L D ++ + + Sbjct: 334 GIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSLIYRDTPLAL 393 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164 ++L NL A G V ++ + ++ + S+ G + Sbjct: 394 RGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQLRISVMDTGIGLSDEDLR 453 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLEK 215 + + L + + + + L K Sbjct: 454 ALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWITLTLPK 511 >gi|326389794|ref|ZP_08211358.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325994062|gb|EGD52490.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 457 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50 +AK L + + S H++ +PI I +++LD G ED+ + Sbjct: 219 LAKTFNDMLDRLEDSFKRQNMFVSDASHELRTPISVIKGYIDMLDRWGKEDKAVLQEAIE 278 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102 + L + L D+ + + + + V+ Sbjct: 279 AIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLNESKNIVVKG 338 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ A G + I V ++ +K +G + Sbjct: 339 QNDINITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSKAYIKIKDDGIGIPQED 398 Query: 163 K---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + E+K + + + L Sbjct: 399 IPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVGKGSEFTITLP 455 >gi|307245847|ref|ZP_07527932.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254820|ref|ZP_07536646.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259262|ref|ZP_07540991.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263601|ref|ZP_07545215.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306853207|gb|EFM85427.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862191|gb|EFM94159.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866629|gb|EFM98488.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871064|gb|EFN02794.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 586 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + D+ + ++ ++SA+ Sbjct: 86 SVLMATISHELRTPLNGIIGLSRILLEGELTDQQREYLKTINISAVSLGHIFSDIIDLEK 145 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSL+ G E+ Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQE 265 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLRSEMGKGSTFTLTIQ 306 >gi|262277653|ref|ZP_06055446.1| phosphate regulon [alpha proteobacterium HIMB114] gi|262224756|gb|EEY75215.1| phosphate regulon [alpha proteobacterium HIMB114] Length = 380 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 18/234 (7%), Positives = 66/234 (28%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 +++ L L + + + H++ +P+ +I LE + + + + + +++ Sbjct: 144 QDLTDLLKIEKLKSDFVANVSHELRTPLQSIKLGLETITDGPAKSDNAAKQKFLNIMKNE 203 Query: 57 SMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + D + + + + + +S Sbjct: 204 TNRMDQLITDLLTLSKIEQEEHKRPNDKVNVKDIINIVISNLETLSQNKKIKISNLISSD 263 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162 + + ++ N+ A ++++ + + + G Sbjct: 264 KIVLGDHNKLIEVFYNIIENAIKYSDENKEISVHAEIKDDFVEIKIIDQGYGIPKTSLGR 323 Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + V L ++++ +L D L Sbjct: 324 VTERFFRVDPEKSKKIGGTGLGLAIVKHLINQHRGQLNIRSELDKGSEFEIKLP 377 >gi|257438017|ref|ZP_05613772.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165] gi|313115943|ref|ZP_07801370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|257199677|gb|EEU97961.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165] gi|310621707|gb|EFQ05235.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 347 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + E + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341 >gi|253580440|ref|ZP_04857705.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848170|gb|EES76135.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 227 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 13/223 (5%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-------EDEVMQLIRLS 56 I S L SR+ H+I +P+ I++ L+L+ D +M + Sbjct: 2 QIEITKQSEKDFRFLLSRLSHEIRNPVTLINSELQLMASSHPELCSYRQWDSLMDNLEYV 61 Query: 57 SMSAIIRLKFMRLAFGYTGSVD----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 F V+ L + ++ + + Sbjct: 62 KELLKELSDFSHAQTVTLVPVNPAEFLTTVLSCQKNTLDYLGIRLEIHVEHTSSPVFLDR 121 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + +++ NL + ++ + G I + + +K NG ++ I Sbjct: 122 IKMRQVIFNLIKNSCEAIDQPGGKIIVNLTPADSGICICIKDNGCGM-THKQTENIFHPF 180 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + ++ L Sbjct: 181 ITYKPEGTGLGLAVTAEIISAHHGQIRVSSTPGQGSAFYIYLP 223 >gi|283796728|ref|ZP_06345881.1| sensor histidine kinase [Clostridium sp. M62/1] gi|291075612|gb|EFE12976.1| sensor histidine kinase [Clostridium sp. M62/1] Length = 347 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + E + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341 >gi|225378511|ref|ZP_03755732.1| hypothetical protein ROSEINA2194_04179 [Roseburia inulinivorans DSM 16841] gi|225209614|gb|EEG91968.1| hypothetical protein ROSEINA2194_04179 [Roseburia inulinivorans DSM 16841] Length = 304 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 85 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 144 Query: 78 DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + E + + + QV K + I +NL Sbjct: 145 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 204 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 205 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 264 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 265 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 298 >gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 761 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/247 (9%), Positives = 58/247 (23%), Gaps = 35/247 (14%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 F L A + + + H+I +P+ + ELL E ++D+ Sbjct: 219 RDEREFALEQAREAADIANRAKSEFLANMSHEIRTPMNGVIGMAELLQETRLDDDQRMYA 278 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VD 97 S L + ++ + L ++ + V Sbjct: 279 ETIGKSGSALLTIINDILNFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVT 338 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKI 153 R + + +++ N+ A + D + Sbjct: 339 MRYDPALPELFEGDAGRIRQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVRLQVTD 398 Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G ++ +I + + L + + + Sbjct: 399 TGIGI-AQDRIGRIFRAFEQADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGS 457 Query: 208 VLSALLE 214 V + + Sbjct: 458 VFTIQIP 464 >gi|53729018|ref|ZP_00134277.2| COG0642: Signal transduction histidine kinase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208411|ref|YP_001053636.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae L20] gi|190150262|ref|YP_001968787.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|126097203|gb|ABN74031.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915393|gb|ACE61645.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 616 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + D+ + ++ ++SA+ Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTDQQREYLKTINISAVSLGHIFSDIIDLEK 175 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 176 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 235 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSL+ G E+ Sbjct: 236 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQE 295 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 296 RKAQGSGIGLAISKRIAKLMGGDLTLRSEMGKGSTFTLTIQ 336 >gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 808 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/239 (8%), Positives = 58/239 (24%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ ++ + + + + H+I +P+ A+ +L + E + + S Sbjct: 407 LRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGILLGTDLNREQRDHMEIIRSSG 466 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 D + D ++ ++ S Sbjct: 467 DALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPVAQEKGLTLGYDIEESI 526 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160 + +IL+N+ A G + ++E F++ G Sbjct: 527 PKTIVSDPTRLRQILVNILGNAVKFTSSGEVRILVSGRDLGGREHEIHFAVMDTGIGIPA 586 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + E + ++ Sbjct: 587 EKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIWAESEEGKGSTFHFTIK 645 >gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 633 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 69/244 (28%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 MA+ I + + + + H++ +P+ + L+LL+ + DE + L+S Sbjct: 248 MAQLIKTREEAEKANSAKSEFLAMMSHELRTPMNGVLGMLQLLETTRMTDEQHEYTALAS 307 Query: 58 MSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + L + + Q + + V Sbjct: 308 ESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSSCAQSFQHSAAQRKLGLDLLVP 367 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGN 156 + + + + +I L + +L + ++VQ +++ +G Sbjct: 368 DDMQALQVQGDPTRIRQILVNLIGNALKFTEQGRVTVQCQWQALDHELLWFTCTVRDSGI 427 Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E ++ D + LA L + + V + Sbjct: 428 GI-PAESLERMFDAFQQADNSISRRYGGTGLGLPIARTLAERMGGTLRAQSEEGQGSVFT 486 Query: 211 ALLE 214 + Sbjct: 487 LEIP 490 >gi|290959132|ref|YP_003490314.1| two component system sensor kinase [Streptomyces scabiei 87.22] gi|260648658|emb|CBG71771.1| putative two component system sensor kinase [Streptomyces scabiei 87.22] Length = 572 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 20/217 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + H++ +P+ +I EL + I S + ++ + L Sbjct: 305 QFVADASHELRTPLASIRGYAELTRRGREEIGPDTRHALGRIESESGRMTMLVEDLLLLA 364 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRER---AKILLNL 122 D+ ++ D ++ ++ +S + ++L+NL Sbjct: 365 RLDAGRPLQFEQTDLIPLVVDTVSDARVAGRSHSWRLDLPDVPALVSADAARLQQVLVNL 424 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST--ID 177 A P G VT VQ ++ +G P F + G+ + Sbjct: 425 LANARTHTPPGTTVTARVQRRGPWMCVDVEDDGQGIPEELLPHVFERFARGDSSRSRASG 484 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + V +A + + + + V + L Sbjct: 485 STGLGLAIVQAVADAHGGAVTVDSVPGR-TVFTVHLP 520 >gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya zeae Ech1591] gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591] Length = 955 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 65/239 (27%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + + + + + H++ +P+ I +L+LL + + +L+ Sbjct: 454 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDANRLVTAM 513 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 S+ + LK + ++ + + E + I + Sbjct: 514 QNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYLPLVVKKRLELYCYI 573 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + + ++L NL A G V + +F ++ G Sbjct: 574 DPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACSDEGYLVFKVRDTGVGIDT 633 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + Sbjct: 634 RSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEFGIRIP 692 >gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] Length = 1334 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 60/242 (24%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57 + + + + + H++ +P+ AI L LL + G+ ++ S Sbjct: 569 LQSARQAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRKTGLNNKQADYAVKSEAAT 628 Query: 58 ----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSW 104 L F ++ G + + + + V + + Sbjct: 629 RTLLRLLNDILDFSKIEAGKMVLECIPFDIHVMLRDLAVILSSNLKIKKVEVLFDIDPTL 688 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160 S +IL NL A +G V + F ++ G Sbjct: 689 PQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLFIKVLKQDSQQVTLHFGVRDTGIGI-A 747 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSAL 212 PE I G + RL E + + Sbjct: 748 PEHQESIFGGFTQAEASTTRRFGGTGLGLVISQRFVALMGGRLELESQPGQGSLFHFTIT 807 Query: 213 LE 214 L Sbjct: 808 LP 809 >gi|196233948|ref|ZP_03132785.1| integral membrane sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196221997|gb|EDY16530.1| integral membrane sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 695 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 26/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56 + + D S + H++ +P+ +I EL+ + +++I + Sbjct: 456 RRQLALAQQKTD----FVSNVSHELKTPLTSIRMFAELMQNGNGGSTEKYPQYLRIIMVE 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + + + + + + +G Sbjct: 512 AERLTRLINNVLDFARLERKQKQFDKKPLDLRSVVERTWEGHALHLQESGFTTRWQAAPG 571 Query: 117 ------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +IL+NL A +V + S+ G ++ Sbjct: 572 PYPVIGDEDALAQILVNLLSNAEKYAGERKEVELHSYLDGGHACVSVLDRGIGVPPGDER 631 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S I + LA E+ +L + + + + Sbjct: 632 KIFESFYRAHDSLSSGIQGSGLGLTLAQQLAREHGGEILYQPRLEGGSNFTLRVP 686 >gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] Length = 1014 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 631 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750 Query: 208 VLSALLE 214 ++ L Sbjct: 751 TVTVALP 757 >gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 940 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 58/239 (24%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S + + H+I +P+ I + LL + E + + +S+ Sbjct: 554 AKERAEAASRAK--TEFLANMSHEIRTPMNGIISMAHLLRMTELTSEQQEYLASLQISSK 611 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + A + + + ++ + + + + Sbjct: 612 NLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPRITQKRLDICTELSDGLP 671 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161 + S +ILLNL A + + D++ + G P Sbjct: 672 EILLGDSLRFKQILLNLLGNAIKFTEQGGISIVAKPSARHDNQLIMRIMIADTGIGM-SP 730 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + L R+ L Sbjct: 731 EVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELMGGRIWAASRPGSGSTFFVELP 789 >gi|51245777|ref|YP_065661.1| Ntr family two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50876814|emb|CAG36654.1| related to two-component system sensory/regulatory protein (Ntr family) [Desulfotalea psychrophila LSv54] Length = 1018 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 62/240 (25%), Gaps = 29/240 (12%) Query: 4 NICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53 + L + + A+ L I HD + + I EL + + V++ Sbjct: 636 KLEMQLQQAQKMEAIGTLAGGIAHDFNNILAVILGYAELAKDEVPANSVIEKDLDQVIVG 695 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R + + L + +++ + +Q + Sbjct: 696 GNRAKELVKQILAFSRQEKVERLPMKVQVLLKEAMRMLRPSLPSTIEIQTEIDPLCGFIL 755 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDS--------------KNENIFSLKING 155 + +I++NL A+ ++ + G + + + G Sbjct: 756 ADPTQVHQIIMNLCTNANHAMDKSGGRLHIELKRISIDEENEHSSLRSGDYVVLVVADTG 815 Query: 156 NLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + E R+ + H S Sbjct: 816 KGIAPDNIGKIFEPYFTTKEIGKGTGMGLATIHGIIREYGGRIDVVSVPGHGAAFSVYFP 875 >gi|319404182|emb|CBI77775.1| Sensor protein [Bartonella rochalimae ATCC BAA-1498] Length = 850 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/241 (8%), Positives = 62/241 (25%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58 + S + A+ L I HD + + AI S + L + I+ ++ Sbjct: 463 EDKMIQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSSDPAYADLINIKNNAN 522 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114 A ++ + + ++ I + I + + Sbjct: 523 RAAALVQQLLAFSRKQTLRPQKVDFTELLSDIRNLILPLLGNNIQLKIIHGKDLWDVKVD 582 Query: 115 ---RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156 ++++NL + A ++ + + + ++ G Sbjct: 583 QASFQRVIMNLVINARDAMLDGGIVTITTNNITKQQSAEFDYAGFVVDEYVQLTISDTGT 642 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + V + + + + + L Sbjct: 643 GIPAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSQEGEGTTFHIFLP 701 Query: 215 K 215 + Sbjct: 702 R 702 >gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R] Length = 389 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK + + L + + H+I +P+ A+ LL D+ + E + LI+ ++ Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAVVGFASLLSIIDDEKEQQEYIGLIQSNTE 213 Query: 59 SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106 + + + GS L L ++ A + ++W Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNA 273 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 +IL +L A +G + + F + G + Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + V + + + ++ + E + Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382 >gi|229016645|ref|ZP_04173582.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273] gi|229022860|ref|ZP_04179380.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272] gi|228738395|gb|EEL88871.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272] gi|228744635|gb|EEL94700.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273] Length = 466 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 59/215 (27%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYELQFIEKKLRISTNLNPEIIVMIDDDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + E + L+ Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVIIKLK 458 >gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1078 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/247 (9%), Positives = 63/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50 + K L + + + + H+I +P+ I ++LL + +++ + Sbjct: 682 LKKTEAALLEAKETAETANRVKTEFLANMSHEIRTPLNGILGMMQLLRQTSLEPEQEKYV 741 Query: 51 QLIRLSSMSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 +L S+ + A + + E + + Sbjct: 742 ELSITSAARLTRLLADILDISRIEAGKMSLFNAPFSAAELVDSVVELFAVPAREKGLRLR 801 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLK 152 + + +IL NL A +G + + Sbjct: 802 CAIHPGLPPLLVGDEARVRQILFNLVGNALKYTEQGDITLELFARDADLCRSECMCIRVV 861 Query: 153 INGNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G + + V+G+ + + + V L + + + Sbjct: 862 DTGVGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGLAIVQRLVELMQGEISVQSEPGAGT 921 Query: 208 VLSALLE 214 + L Sbjct: 922 AVLVSLP 928 >gi|225414556|ref|ZP_03761745.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme DSM 15981] gi|225041912|gb|EEG52158.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme DSM 15981] Length = 465 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 26/239 (10%) Query: 1 MAKNICF---NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51 M++++ + + S H++ +PI +I ELL+ + ++ + Sbjct: 225 MSRDVEEYLARIEKEKQIRQEFFSNASHELKTPITSIQGYAELLEGGLIRDENMQRDFAG 284 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQV 102 I+ ++ + + + ++ + A + + Sbjct: 285 RIKKEAVRMTGLINDILMISRLETKEAEVVMTDVRVSVLLEEIVGGLKPQAAAGQVFIHI 344 Query: 103 SWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 I + + + + NL A GG+V ++V++S + + ++ NG Sbjct: 345 DCQPLMIRANAQHMRELFTNLIGNAVKYNRPGGQVWVNVRESDRQMVARVRDNGVGI-PE 403 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + V + + E D L Sbjct: 404 DSLDRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVGYYHGTIRVESKLDEGSEFVVTLP 462 >gi|167769574|ref|ZP_02441627.1| hypothetical protein ANACOL_00908 [Anaerotruncus colihominis DSM 17241] gi|167668542|gb|EDS12672.1| hypothetical protein ANACOL_00908 [Anaerotruncus colihominis DSM 17241] Length = 453 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 61/216 (28%), Gaps = 18/216 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR------------ 63 S H++ +P I + E L + E E + + + A Sbjct: 230 QFSSDASHELRTPTAVIISQCEYALSDAVDEAERRESLGVVLRQARRMSAIISQLLLLAR 289 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 ++ + + + + +Q+ ++L N Sbjct: 290 AENGKFEPSWERLNLSELCEMVLLEMEDTAQSQGIALEMQLEPDIMLTGDQTLLMRLLTN 349 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178 L A +GG+V + ++ + + + G R + +++ + + Sbjct: 350 LITNAIRYNRKGGRVEVCLRRMETGAVLRVADTGVGIREEDLPKIWSRFFRADASRSSTG 409 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + E + V + + Sbjct: 410 TGLGLSMARWIAQVHGGTITVESVYGQGSVFTVTIP 445 >gi|78356727|ref|YP_388176.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219132|gb|ABB38481.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 581 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 70/229 (30%), Gaps = 18/229 (7%) Query: 3 KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + +LS + L A+ L + + H+I +P+ A+ + + + ++ + + Sbjct: 335 RTLEKSLSDAEKLAAVGTLAAGVAHEIRNPLSALRGFAQYFAKKFKDRHPEEVYAQTMVR 394 Query: 60 A--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKI 109 L R V + ++E ++ + K V E Sbjct: 395 EADRLNRVITDLLYLARPRRVTPRLVRLRALVSEVEDLVRFDLDERKVNMVVSLGPEEVW 454 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFT 165 + +LNL + + +L V + K+ ++ N E+ Sbjct: 455 ADEDTLKQAVLNLVLNSLDALKETDGGARQVDVASGLAKDGVWLFVRDTANGM-TKEQAE 513 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q + + + V ++ + + + H + Sbjct: 514 QAFEPFYTTKKKGTGLGLALVHKTMRDHGGKAIIDTAPGHGTTVGLFFP 562 >gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 659 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 59/243 (24%), Gaps = 32/243 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S + S + H++ +P+ AI +L + + + +A Sbjct: 261 AKEAAEAASRAK--STFLSNMSHELRTPMNAIIGMTYMLKRQNADPLQVDKLGKIDNAAN 318 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKI 109 L+ + + + L + + R + Sbjct: 319 HLLQLLNDVLDLSKIDAERMTLEQTAFSIPELAADVASLLTPRAESARLRFILDVDSRLK 378 Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 ++LLNL A RG ++ + S++ G Sbjct: 379 GLRLLGDPLRLQQVLLNLAGNAIKFTERGEVRIVARVVEDDEKAVHIELSVRDTGIGI-A 437 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VLSAL 212 PE +I + + L + + Sbjct: 438 PEAIGRIFNPFEQADGSTTRKYGGTGLGLPICQRLVRLMGGEIQVVSTPGAGSEFTFTVR 497 Query: 213 LEK 215 L++ Sbjct: 498 LQR 500 >gi|326798783|ref|YP_004316602.1| integral membrane sensor signal transduction histidine kinase [Sphingobacterium sp. 21] gi|326549547|gb|ADZ77932.1| integral membrane sensor signal transduction histidine kinase [Sphingobacterium sp. 21] Length = 341 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 66/242 (27%), Gaps = 28/242 (11%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLE------LLDEVGIEDEVMQ 51 A+ + ++ S I H+ +P+ AI LE + ++ + +Q Sbjct: 99 AREKKIEIDALKNQEQFRREFLSNISHEFKTPLFAIQGYLEAVQDGLMYEDPERAEVFLQ 158 Query: 52 LIRLSSMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + +K + + + + + + ++ + ++ Sbjct: 159 KASNNIDRLSYLIKDLDEIAKLESGEIKINYQRFDLSLLVKEVMESLELKAEKHDIELIF 218 Query: 101 QVSWTGEKIDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++ + ++L+NL + G I + ++ + + +G Sbjct: 219 KQKYSYPIFVNADREKIRQVLVNLISNSIKYGKEKGHTYIKTYELHDQVLIEVTDDGIGI 278 Query: 159 RFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I + V + ++ + + L Sbjct: 279 EEKYLPRLFERFFRTDRSRSRQIGGSGLGLAIVKHILEAHQQTISVRSTEGLGSTFGFTL 338 Query: 214 EK 215 K Sbjct: 339 AK 340 >gi|295402180|ref|ZP_06812138.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294975771|gb|EFG51391.1| integral membrane sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 442 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 56/219 (25%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL-- 69 + H++ +P+ +SLE+++ + +V ++ + + Sbjct: 220 FVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVFDDMKDELRRMTKLINDLLWLA 279 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + L + + + + + +++ Sbjct: 280 RSDANAIELTKEWFLLPPVIDELIRKCRPLAEQKHIKFVTNIQKDMAIYGDKERIIQLIF 339 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175 L A G++ I+V+ + + G + F + + Sbjct: 340 ILLDNAVKYNTENGQIKIAVERDRKNVNIEISDTGIGIPVEQQALIFERFYRADPSRSRK 399 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + + L Sbjct: 400 QQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438 >gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] Length = 1032 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 529 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 588 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 589 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 648 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 649 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 708 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 709 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 768 Query: 208 VLSALLE 214 ++ L Sbjct: 769 TVTVALP 775 >gi|254444094|ref|ZP_05057570.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258402|gb|EDY82710.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 658 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + S + A+ L I HD + + I + +L +++ + + IR Sbjct: 264 LRRLEQDLFQSQKMEAVGRLAGGIAHDFNNILAVILSFSDLVIDKIEDGDPNRKFITEIR 323 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTG 106 ++ A + + ++ + I + + Sbjct: 324 KAAERAADLTQQLLSFSRRNKNLKPEVLDAIKVTRDMQKILRRLVPENIQYNLRFSDTPI 383 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------------NENIFSL 151 +IL+N A ++P GG++ +S+ + + S Sbjct: 384 FVNINRTALEQILINFTTNARDAMPDGGQMELSMVSCEVDQAELLLPDYMDAKPYLVLSF 443 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + G E +I + + + V + + + Sbjct: 444 QDTGTGI-DAETQKRIFEPFFTTKEQGKGTGLGLATVYGIVKQVNGHIEVASEKGKGTRF 502 Query: 210 SALLE 214 L Sbjct: 503 RIFLP 507 >gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 649 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 74/242 (30%), Gaps = 28/242 (11%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVM 50 + + L ++ +L + + H++ +P+ AI +LL + + Sbjct: 391 QRELQEALRQAEIANRSKSLFLATVSHELRTPLNAIIGFSDLLAQKVFGPLGDERYEGYA 450 Query: 51 QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQ 101 I+ S + ++ M G VD I + ++ + +Q Sbjct: 451 HDIQTSGQHLLSLIEDVLDLSRIEMGQIRLRLGLVDLPIEIQAAVAMVRARRGQEIASIQ 510 Query: 102 VSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + L+ + +IL+NL A P G++ ++ Q + ++ +G Sbjct: 511 IEVAEGFPTLNADARLIRQILINLISNAAKFTPPSGRILVTAQVVDDGISIAVIDDGIGI 570 Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + + +L E ++ L Sbjct: 571 DPADHAKVLRPFEQADNRLSRRYEGVGLGLPLTKAFVEVHNGQLQLESAIGEGTTITIRL 630 Query: 214 EK 215 K Sbjct: 631 PK 632 >gi|149926856|ref|ZP_01915115.1| PAS/PAC sensor signal transduction histidine kinase [Limnobacter sp. MED105] gi|149824408|gb|EDM83626.1| PAS/PAC sensor signal transduction histidine kinase [Limnobacter sp. MED105] Length = 777 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAI----HNSLELLD----EVGIEDEV 49 M++ L + L+ L L S + H+I P+ AI S+ L V Sbjct: 526 MSRQQQEKLQFTSRLITLGELASSLAHEINQPLAAISNYNMGSVTRLKAGKVSPEDLLPV 585 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSW 104 ++ + + + A ++ +R +G I + R++++ Sbjct: 586 LEKVNVQAQRAGDVIRRIREFVKQQEPKRGPCPIGKIIEDAISFSRLEAKHQSARIEMNL 645 Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNL 157 + + + ++L+NL ++ I V S + ++ +G Sbjct: 646 PDALMSVVADPVLIEQVLMNLIKNGLEAMGHLPPEQKLIEIQVGQSAQFALIEVRDHGVG 705 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + D + + ++ +L E V L Sbjct: 706 V-PEEIRQRLFESFFTTKSDGMGMGLNICRTIIEYHQGQLWVEPAQGQGSVFKFTLP 761 >gi|606149|gb|AAA58012.1| protein kinase [Escherichia coli str. K-12 substr. MG1655] Length = 776 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 53/214 (24%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----H 179 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 501 >gi|88808936|ref|ZP_01124445.1| adaptive-response sensory kinase [Synechococcus sp. WH 7805] gi|88786878|gb|EAR18036.1| adaptive-response sensory kinase [Synechococcus sp. WH 7805] Length = 383 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54 + + + + L + H++ +P+ A +L+ I+ +L Sbjct: 132 LRQENETLIDRLQSQERLLRMVAHELRTPLTAATLALQSQQLGQIDLNRFRDVLKRRLDE 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGE---K 108 ++ +S + + I ++ + ++ D + + Sbjct: 192 IALLSKDLLEVGSTRWEALFNPQRLDLASVAAEAILELEKLWLGRDVTIHTDIPADLPLV 251 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A GG +++++ + S+ +G E+ Sbjct: 252 YADQRRMRQVLLNLLENALKYTQDGGTISVAMLHRTSQWVQVSVSDSGPGIPEQEQQRIF 311 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + R+ + + Sbjct: 312 LDRVRLPQTSGGTSGFGVGLSVCRRIVEVHGGRIWVVSEPGKGACFTFNVP 362 >gi|90426098|ref|YP_534468.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90108112|gb|ABD90149.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 461 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 61/232 (26%), Gaps = 21/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM-------- 50 + +++ + + + + + H++ P+ AI N L LL + + Sbjct: 226 QTELLHVARLGTMGEMSAALAHELNQPLAAIANYLKGSRRLLQDSSDKSAERIRNALDKA 285 Query: 51 -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEK 108 + + +F+ + + D + V +S Sbjct: 286 AEQALRAGEVIQRLRQFVSRGETEKSNERLDRIVDDALALALVVAKDRAVAVSLSLDPSA 345 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPE 162 + ++ +I L + +L T + ++ NG PE Sbjct: 346 QHVLVDKVQIQQLLLNLIRNALEAMEHQTPRELKISSTRCDDGMIEVTVADNGPGI-DPE 404 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + + + E + Sbjct: 405 LADRLFLPFMTTKSTGMGVGLSLCRTIVTAHGGGIQAEPQPGGGTAFRFTIP 456 >gi|332710709|ref|ZP_08430650.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332350486|gb|EGJ30085.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 480 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 65/238 (27%), Gaps = 25/238 (10%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ L +++ S + H++ +P+ + ++ L + E ++ Sbjct: 241 LAQTFDEMLVRLNEALENQRQFVSNVSHELRTPLTLVSGYVQSTLRRGANLSPPQREALE 300 Query: 52 LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QV 102 + + + L+ + S + ++ ++ + +V + Sbjct: 301 IASSEADRTVQMLQDLLDLARADSGHIHFNLESFVLDELVEEVAEMARQYTKRVIKVECI 360 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++LLNL A VT+ + + G + Sbjct: 361 KPGIWVKGDINRLKQVLLNLIDNAVKYSSVDKPVTVKLTQVDGRGRIEVCDRGIGIPLKQ 420 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V L + + + + L Sbjct: 421 -QARIFDRFYRVDETRTRSTGGAGLGLSIVKTLVEGMGGSVKVRSQLNKGSIFTVCLP 477 >gi|300088283|ref|YP_003758805.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528016|gb|ADJ26484.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 581 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L I H++ +PI I +E L D+ + + I + + Sbjct: 363 LVGNISHELRTPITGIKAMVETLHDGAIDDKEAAKDFLTRIESEVDRLAQTVSELTELSR 422 Query: 73 --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSRERAKILL 120 +D + + D+ + ++ + + E + + ++ Sbjct: 423 IETGKAELRLEPLDLNVLVKDVIEQLQPLAERQQVTVSATLAKDLPEVLADRDRIRQTII 482 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177 NL A GG V + + + NE I + G + F + + + Sbjct: 483 NLVHNAVKFNRVGGNVKLYTKTNNNEVIVDISDTGIGISKDDLPHVFERFYKADRARSKS 542 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + S L Sbjct: 543 GSGLGLAIAKHTIQAHNGKIWVASEQGNGSTFSFSLP 579 >gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] Length = 1012 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 25/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58 AK + + S++ H++ +P+ +I ++L+E + ++ + IR Sbjct: 635 AKEEAEKANQAK--SEFLSKVSHELRTPLNSILGYAQILEEQGEKDLTEKQLNRIRKILK 692 Query: 59 SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L V + D ++++ + + Sbjct: 693 AGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHA 752 Query: 108 KIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ +ILLNL A P +TI + +++ ++ G E Sbjct: 753 YQEVFVEVDELRFQQILLNLLTNAIKYSPAYRDITIYTEITQHHVTILIEDRGFGIPASE 812 Query: 163 KFTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + D I V L + Sbjct: 813 LN-RIFEPFYRINRLEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFP 866 >gi|296121904|ref|YP_003629682.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296014244|gb|ADG67483.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 895 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 69/244 (28%), Gaps = 35/244 (14%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54 + + L + + S + HD + I I E L + + + + Sbjct: 639 EQELIQNQRLSVMKQMASGLSHDFNNLISVILGYCETLLIRPDTTDQQRSLILPIREAGH 698 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDL 111 +S + F R ++ + +E ++ + + + + + Sbjct: 699 HASRMIRQLIAFSRKQPVAFERINLNSIIRSMEMMVRGILRQNFVLDLRLAELLPNIMAD 758 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-------------------NIFSLK 152 + +IL+NL + A ++P GG I + + ++ Sbjct: 759 PVQIDQILVNLAINARDAMPEGGTFAIKTEWVSSHADHPQSIRTTETVVQANDLVRITVS 818 Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G + +I + + + H + V + ++ + Sbjct: 819 DTGTGI-PKDLIPRIFEPFFTTKGEGQGHGLGLSVVHGIVNQAGGTIRVFSEPGKGTTFE 877 Query: 211 ALLE 214 L Sbjct: 878 IDLP 881 >gi|256826676|ref|YP_003150635.1| signal transduction histidine kinase [Cryptobacterium curtum DSM 15641] gi|256582819|gb|ACU93953.1| signal transduction histidine kinase [Cryptobacterium curtum DSM 15641] Length = 319 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 26/233 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----S 56 +A+ L + H++ +P+ AIH + ELL + + E+ + Sbjct: 90 LARQEKQQLQ-------FVGDVAHELRTPLTAIHGNAELLADPDLPPEMREKFGHTVVTE 142 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTG 106 S + + VD + + + V + Sbjct: 143 SERLTRLVNDLLSLQHIEGDSYVLNFTRVDLRPVAQEAVDALAPVLQERGAHCVVIGEAP 202 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEK 163 + + +++ NL A + GG + + + +I ++K +G Sbjct: 203 DVLGNRDRLKQVVSNLVDNASRFIEPGGHIRVELYGVGGNSIIAVKDDGTGFGDVDPKML 262 Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + + + + Sbjct: 263 FERFFRTDFSRARNTGGSGLGLSIVKSVVEAHDGTVEAYNLPEGGACFIVAIP 315 >gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] Length = 565 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 53/218 (24%), Gaps = 22/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65 + I H++ +P+ + S EL+ + + + +++ S S Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSNSQREIVNNLSQSGEFLRTIINDLLDYSKIN 267 Query: 66 --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLN 121 + L D + I + V V+ ++ +N Sbjct: 268 AGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVN 327 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 L A +G + ++ +G T Sbjct: 328 LIGNAIKFTDQGHVSVEIKWLNDQFIFS-VEDSGVGIAQSAIKTLFEPFTQADNSSSRNY 386 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + LA + + I + L Sbjct: 387 EGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLP 424 >gi|149176869|ref|ZP_01855479.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797] gi|148844306|gb|EDL58659.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797] Length = 491 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 18/242 (7%), Positives = 58/242 (23%), Gaps = 29/242 (11%) Query: 1 MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------- 51 + + + V L + + H++ +P+ + L+ + + ++ Sbjct: 243 LQTQQQLRHIDRLGTVGTLAAGVAHELGTPLNVVSGRAGLISSGQLSEADVRSSAQTIQK 302 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTG 106 + L F R S+D + ++++ + + Sbjct: 303 ETERMTAIIRQLLDFARRTGTEQASIDLIRLAQQTCELMQPLAMKAHVELIVSANENLPV 362 Query: 107 EKIDLSRERAKILLNLFMVAHA------------SLPRGGKVTISVQDSKNENIFSLKIN 154 + + +++ NL A + + + Sbjct: 363 NTVGDPGQLQQVITNLISNAIQAIPDGGKIRITVHSEDIQPPAMIESELNRFACLEVIDT 422 Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E + + + + + + E+ + D Sbjct: 423 GTGMTNIE-TEHVFEPFYTTKDVGEGTGLGLSIAYGIVREHGGWIDVASEKDQGTTFRVW 481 Query: 213 LE 214 L Sbjct: 482 LP 483 >gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Enterobacter sp. 638] gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 949 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 67/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V +L+ Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + + + Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMPLVVRKQLGLYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL A G + + V + + ++ G Sbjct: 572 EPDVPLTLLGDPMRLQQVISNLLSNAIKFTDV-GCIILHVSRAGDYLSIRIRDTGVGIPA 630 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + L + + + + Sbjct: 631 KEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDTEPGMGSQFTIRIP 689 >gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 597 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 59/236 (25%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 359 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 414 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVS 103 L R+ G+ + + ++ Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E ++L NL A GG V + ++ S + ++ +G+ + Sbjct: 475 RDIEIAFDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K + + S L Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLP 590 >gi|239931755|ref|ZP_04688708.1| two component sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 491 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 13/203 (6%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 H++ +PI + LEL+ +E +E ++L+ ++ + R F Sbjct: 286 HELRTPITIVRGHLELMGEEPAEREETVRLVTDELDRMSRIVEDLLLLARAERPDFVTPE 345 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 V D+ A D ++ + E + + + ++ L A G Sbjct: 346 PVQLAELTADVFVKARTLGARDWQLAGTADREVVLDPQRITQAMVQLAQNAVQHTTTGQT 405 Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190 + I + + + +G+ R + F + G + V +A Sbjct: 406 IRIGSRAEGSRIELYVADSGSGVRPQDRELIFERFRRGTSRRGAHGSGAGLGLSIVKAIA 465 Query: 191 HENKIRLLPEIIDDHNVVLSALL 213 + R+ + + L Sbjct: 466 EGHGGRVRLDDTEGGGATFVLTL 488 >gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234] gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234] Length = 989 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 68/240 (28%), Gaps = 31/240 (12%) Query: 2 AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + + + ++ + + H+I +P+ + ELL+ + ++ + + + Sbjct: 329 REELERARDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTELSEQQRRYVSIIL 388 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQ 101 SA + + ++ + L I V+ D + + + Sbjct: 389 HSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADKGLELACHIP 448 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNL 157 + +I++NL A G V D F ++ G Sbjct: 449 PEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGQGDHGAHLQFEVRDTGIG 508 Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + +I + + LA + R+ + V + Sbjct: 509 IPEAQ-QERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDSKPGVGSVFTF 567 >gi|153003674|ref|YP_001377999.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027247|gb|ABS25015.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 663 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 19/215 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLA-- 70 + + HD+ +P+ +I + L+ + IR + ++ + Sbjct: 446 AEVSHDLRNPLSSIILAAAQLERSAGRSELPDLVGRRAASIRRAGDRMNHLVQDLLDLAR 505 Query: 71 --------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 S L+ + ++L NL Sbjct: 506 AENGRLELDVGEHSARELVDDAVESIAPVVRERELRVRAAVEPLLVRCDRERVHRVLANL 565 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--SHD 180 A PR G V ++ + + +F++ G E+ Sbjct: 566 LSNAVKVSPRKGTVELTARQRERAVLFTVADEGPGISLDEQRHMFEHYWRGRESGAQGVG 625 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V L + ++ + + S L + Sbjct: 626 IGLSIVKTLVERHGGKVWVDSVPGAGARFSFTLPR 660 >gi|194467365|ref|ZP_03073352.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] gi|194454401|gb|EDX43298.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] Length = 443 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 57/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54 + + H++ +P+ I + L+ G + + Q + Sbjct: 221 RQYRTMQREK---EFIANASHELKTPLAGILGHVNLIRRHGDKHPELIGKSLKYIDQEAQ 277 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 S L ++ + + ++ ++ + Sbjct: 278 RMSQLINELLILEGHQTKKLTEINLSKIIFAEVESLQGAYQQKFITDLNPNISYQITKGD 337 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171 ++ NL A P + + + I + G + F + + Sbjct: 338 FQSLVHNLLENAAKYSPTDSTIDVLLTTDDRHIILRVADQGRGIAKENREKVFERFYRED 397 Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I I V ++ + ++ + + + L K Sbjct: 398 ESHSNKIAGSGIGLAIVKMIIEKYHGKITIRDNEPSGTIFTVYLPK 443 >gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 743 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 59/247 (23%), Gaps = 39/247 (15%) Query: 6 CFNLSSMDLVA-------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + +L A + + H+I +P+ + ELL E + E Q Sbjct: 343 AAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMAELLSETKLSIEQRQY 402 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------ 100 + S+ L + + + L + + R+ Sbjct: 403 VDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVSCVRDTMRLLKPQAQAKGLRL 462 Query: 101 ----QVSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKI 153 ++L+NL A R ++ QD ++ Sbjct: 463 SLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGGVTLRLRSEAQDPGYLLTLEVED 522 Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G EK ++ + + L R+ + Sbjct: 523 TGIGI-AAEKIERVFERFSQADADTTRLYGGTGLGLTISRELVALMGGRITVDSTLGQGS 581 Query: 208 VLSALLE 214 + L Sbjct: 582 CFTLCLP 588 >gi|30022095|ref|NP_833726.1| sporulation kinase B [Bacillus cereus ATCC 14579] gi|228960272|ref|ZP_04121926.1| hypothetical protein bthur0005_37410 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047695|ref|ZP_04193278.1| hypothetical protein bcere0027_36750 [Bacillus cereus AH676] gi|229129286|ref|ZP_04258258.1| hypothetical protein bcere0015_37300 [Bacillus cereus BDRD-Cer4] gi|229146581|ref|ZP_04274949.1| hypothetical protein bcere0012_37220 [Bacillus cereus BDRD-ST24] gi|296504502|ref|YP_003666202.1| sporulation kinase B [Bacillus thuringiensis BMB171] gi|29897652|gb|AAP10927.1| Sporulation kinase B [Bacillus cereus ATCC 14579] gi|228636873|gb|EEK93335.1| hypothetical protein bcere0012_37220 [Bacillus cereus BDRD-ST24] gi|228654212|gb|EEL10078.1| hypothetical protein bcere0015_37300 [Bacillus cereus BDRD-Cer4] gi|228723655|gb|EEL75017.1| hypothetical protein bcere0027_36750 [Bacillus cereus AH676] gi|228799407|gb|EEM46370.1| hypothetical protein bthur0005_37410 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325554|gb|ADH08482.1| sporulation kinase B [Bacillus thuringiensis BMB171] Length = 424 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TNEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|291523429|emb|CBK81722.1| amino acid-binding domain sensor hybrid histidine kinase [Coprococcus catus GD/7] Length = 953 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 28/222 (12%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + HDI +PI I L +L++ G + E + + L + ++S Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKINESSKLLLSLVNDVLDMAKLESD 643 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123 + E + D + + +S+ + K+L+NLF Sbjct: 644 TVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLF 703 Query: 124 MVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172 + TI + F ++ NG ++ Sbjct: 704 TNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIGMSEEFIKNELFTPFVQADNSP 763 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V L + + E + +L Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805 >gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] Length = 2349 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 63/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 N+ + ++ + I HD+ +P+ + ELL + + V + + Sbjct: 1843 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1902 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106 + + + G + I + + V+ + Sbjct: 1903 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPNL 1962 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + +I +NL ++ P+G ++ + + G + Sbjct: 1963 LVMGDPVRLHQIFMNLLSNSYKFTPKGSVTVQAIVEEDTPEQIRVTCKVADTGIGISEEQ 2022 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 ++ + + + + R+ + + ++ L Sbjct: 2023 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2079 >gi|225027309|ref|ZP_03716501.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353] gi|224955371|gb|EEG36580.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353] Length = 955 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 28/222 (12%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + HDI +PI I L +L++ G + E + + L + ++S Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKINESSKLLLSLVNDVLDMAKLESD 643 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123 + E + D + + +S+ + K+L+NLF Sbjct: 644 TVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLF 703 Query: 124 MVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172 + TI + F ++ NG ++ Sbjct: 704 TNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIGMSEEFIKNELFTPFVQADNSP 763 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V L + + E + +L Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805 >gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 648 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 + + + ++ + + H++ +P+ AI ++L + + + Sbjct: 339 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAMSLSPERSREYAGII 398 Query: 57 SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101 + S L + VD + ++ Sbjct: 399 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGIALTSAP 458 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V + + +R ++L+NL A PRGG+V + V+ + +G Sbjct: 459 VPASCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 518 Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D + + + + V LA + + E ++ L Sbjct: 519 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 576 >gi|163853028|ref|YP_001641071.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163664633|gb|ABY32000.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 684 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53 A+++ ++++ L + HD + + I +S +LL + ++ Sbjct: 299 AQDVLRQSQKLEVIGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAEDRRTRYIEAISNTV 358 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ L F R + + + +++ V ++ Sbjct: 359 DRAAKLTGQLLAFARRQTLKPKVFAACDSVRSLSEMLGTLTGSRITVVTELPENACFVNA 418 Query: 114 ERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNL 157 + ++ L+N+ + A ++ + V S+ G+ Sbjct: 419 DPSQFDTALVNMAVNARDAMEGEGQLTIRVEPVEQMPSVRAHPAVQGPFVAVSISDTGSG 478 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + + V A ++ ++ E + L + Sbjct: 479 I-AKDVVERIFEPFFTTKAVGQGTGLGLSQVFGFAKQSHGEVVVESEVGQGTTFTLYLPR 537 >gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 744 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 55/236 (23%), Gaps = 25/236 (10%) Query: 4 NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 N + + + + H+I +P+ I LL + + E + S SA Sbjct: 226 NARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTRLSSEQRTYVAAISTSASA 285 Query: 63 R----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + I + + + Sbjct: 286 LLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVRAFTKKIGLGCHIAPTVPD 345 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +ILLNL A G VT ++ D + F + G Sbjct: 346 TILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTTTIHDGAPKLAFRVDDTGPGIEKDSL 405 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + + + + Sbjct: 406 SRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVDSAPGEGATFTVYIP 461 >gi|330900231|gb|EGH31650.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 417 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/255 (10%), Positives = 72/255 (28%), Gaps = 41/255 (16%) Query: 1 MAKNICFNLS---------SMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIED 47 + + + M++V L + I HD + + A+ S L L + Sbjct: 154 LRQREEERVQMISDRFQAQKMEIVGQLTAGIAHDFNNMLTAVTGSASLAEHYLKNDKPDH 213 Query: 48 ------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 ++ + +S + F R + ++ + + ++ + + Sbjct: 214 AKKHLANALRASQTASAMTARLMAFSRRHKLGSEVINVNPLITSLIELGRGSLGSKVLYE 273 Query: 102 VSWTGEKIDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSK-------------- 144 + ++ NL + A ++P GG ++I + Sbjct: 274 TDLASNLWLTKVDPHQLESAVFNLMVNARDAMPAGGTISIRTSNVDVSEQMAAKGSLLVT 333 Query: 145 --NENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPE 200 + + G +I + + + + V ++ L E Sbjct: 334 GQSCVRIQVSDTGTGMPVA-LIERIFEPFFTTKEEGKGTGLGLTMVYGYVNQAGGCLTVE 392 Query: 201 IIDDHNVVLSALLEK 215 + H S + + Sbjct: 393 SQEGHGTTFSLFMPR 407 >gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] Length = 950 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 65/240 (27%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + + L+ Sbjct: 453 MEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGIDSLVTAM 512 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + + + + Sbjct: 513 NNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLTLYCFI 572 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +++ NL A G + + F ++ G Sbjct: 573 EHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTGCIILHAYVAQG-YLAFRVRDTGVGIPA 631 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 632 KELP-RLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQFIVRIP 690 >gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1034 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 68/237 (28%), Gaps = 28/237 (11%) Query: 3 KNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53 + + + + + + H++ +P+ ++ ++L + + + + I Sbjct: 797 RANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGELNDSQKKYISNI 856 Query: 54 RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + M LA + + ++D + Sbjct: 857 SNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKKSIDLEISK 916 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP 161 E + +I+ NL A GKV++S + + ++K G Sbjct: 917 PADIEINADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVKDTGIGI-PE 975 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +K +I D + + V + +L E V + L Sbjct: 976 DKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGSVFTLL 1032 >gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii Ech703] gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703] Length = 934 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 68/240 (28%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + + + + + H++ +P+ I +L+LL + + +L+ Sbjct: 432 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKSLSRDANRLVEAM 491 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 S+ + LK + ++ + + + I + Sbjct: 492 QNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLPLVVKKRLTLYCYI 551 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + S + + ++L NL A G V + F ++ G Sbjct: 552 EPSVPVSILGDAVRLQQVLSNLLSNAIKFTDTGCIVLQVQRRHDGYLAFQVRDTGVGIEP 611 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + L + E + + Sbjct: 612 RSVM-KLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIESEPGLGSLFGVRIP 670 >gi|218260978|ref|ZP_03476005.1| hypothetical protein PRABACTJOHN_01669 [Parabacteroides johnsonii DSM 18315] gi|218224270|gb|EEC96920.1| hypothetical protein PRABACTJOHN_01669 [Parabacteroides johnsonii DSM 18315] Length = 582 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 21/230 (9%), Positives = 61/230 (26%), Gaps = 19/230 (8%) Query: 2 AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 N + + L + + + H+I +P+ AI +++ E EDE + + + + Sbjct: 353 RDNELIRVKEADKLKSAFLANMSHEIRTPLNAIVGFSDIVAETPDEDEKKEYLEIIHKNN 412 Query: 61 IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L + T + + + + + Sbjct: 413 DLLLHLIDDILDFSKIESGTLDYHITETNIKEICGEVFLASSLKMKPGVKLVFDKELPSI 472 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ N A +G Q+ S++ G ++ + Sbjct: 473 RLQTDPQRVMQVISNFVNNAIKFTEKGSITISYKQERN-YLRVSVQDTGIGISEDDRK-R 530 Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + + + L Sbjct: 531 IFERFIKINEFKQGTGLGLTISRTIIESLNGTIGVDSVKGSGSTFWFTLP 580 >gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] Length = 1014 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 630 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750 Query: 208 VLSALLE 214 ++ L Sbjct: 751 TVTVALP 757 >gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] Length = 1014 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 631 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750 Query: 208 VLSALLE 214 ++ L Sbjct: 751 TVTVALP 757 >gi|89054475|ref|YP_509926.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1] gi|88864024|gb|ABD54901.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1] Length = 752 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 75/243 (30%), Gaps = 32/243 (13%) Query: 3 KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55 K + + S + A+ L + HD + + AI +LL D+ + + I Sbjct: 362 KTLEQQFVQSQKMQAIGELAGGVAHDFNNLLTAITGHCDLLLLRHDQGDQDYADLVQINQ 421 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---- 111 ++ A + + ++ L D + + ++S + Sbjct: 422 NANRAASLVGQLLAFSRKQTLEPEVLDLRDSIGELTHLLNRLVGERISLSLSNDPDLAPI 481 Query: 112 ---SRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKI 153 R+ ++++NL + A ++ ++ + + ++ Sbjct: 482 RADRRQLDQVIMNLVVNARDAMADGGEVRVETRMVHLAEPMSRDQAIVPAGSYVTIRVRD 541 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 +G+ P+K +I + + + + + + + + + + Sbjct: 542 HGHGI-PPDKLHRIFEPFFTTKRTGEGTGLGLSMAYGIVKQTGGYIFVDSVVGSGTTFTI 600 Query: 212 LLE 214 + Sbjct: 601 YIP 603 >gi|150016956|ref|YP_001309210.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903421|gb|ABR34254.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 644 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 29/243 (11%) Query: 1 MAKNICF---NLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQL 52 +A+N + L + + H++ +P+ I ++ +L + + E M+ Sbjct: 368 LAENKRLLEETVQYEKLKTEFIANMSHELRTPLNIIFSTAQLFNVLINRDENLNTEKMKN 427 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKR 99 S RL + +D + + E + + Sbjct: 428 YTNSIKQNCYRLVRLVNNLIDITKIDSGYMKLELKNGNIVQVVEDITQSTAEYVEYMSRT 487 Query: 100 VQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + E+ ++ + K+ L A G K+++ + D + + S+K G Sbjct: 488 IIFDTDNEEKIMAFDEEKLERILLNLISNATKFTEPGDKISVDLYDMDDHIVISVKDTGR 547 Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + + I V L ++ + + I Sbjct: 548 GIPEEKVSQLFQRFKQVERLLNRSHEGSGIGLSIVKALVEMHEGTIEVKSIYGEGTEFII 607 Query: 212 LLE 214 L Sbjct: 608 CLP 610 >gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1115 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 56/239 (23%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + A + + H+I +P+ A+ ++L + E E + + Sbjct: 520 MEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVIGFSDILLDDVFEAEQRKHLTTI 579 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------------IEQVIEDFIAVDKRV 100 + SA L + Q + + ++ V Sbjct: 580 NQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLIEEIDAVVSTLWLQANKKELYLNVSV 639 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 G ++L NL A GG F++ G Sbjct: 640 APEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGGVNIKVGVKPSGCIEFAIIDTGIGMTK 699 Query: 161 PEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L ++ S L Sbjct: 700 EQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLIELMGGKISATSTYGEGSCFSFTLP 758 >gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97] Length = 2408 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 N+ + ++ + I HD+ +P+ + ELL + + V + + Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106 + + + G + I + + V+ + Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDL 1994 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + +I +NL ++ P G ++ + + G + Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 ++ + + + + R+ + + ++ L Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|294644343|ref|ZP_06722109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810705|ref|ZP_06769353.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292640313|gb|EFF58565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442038|gb|EFG10857.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 744 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44 K+ L + L+A + + H+I +P+ +I +L Sbjct: 503 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 562 Query: 45 -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +++LI + I +M +F + + + QV+ + Sbjct: 563 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 622 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 E ++L N A K+ S + ++ +G Sbjct: 623 EVDDTPLEINVDRERLIQVLTNFLNNACKFTETGYIKLGYSYLPDEGNVQIYVEDSGRGI 682 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + ++ + ++ + + +L Sbjct: 683 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 739 >gi|237715167|ref|ZP_04545648.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408882|ref|ZP_06085427.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229445000|gb|EEO50791.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353093|gb|EEZ02188.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 754 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44 K+ L + L+A + + H+I +P+ +I +L Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572 Query: 45 -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +++LI + I +M +F + + + QV+ + Sbjct: 573 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 632 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 E ++L N A K+ S + ++ +G Sbjct: 633 EVDDTPLEINVDRERLIQVLTNFLNNACKFTETGYIKLGYSYLPDEGNVQIYVEDSGRGI 692 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + ++ + ++ + + +L Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 749 >gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 758 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 55/241 (22%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + +L + + H+I +P+ I EL V + + L S Sbjct: 373 LQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAELAIGNPGNPGVQEYLTLIRQSG 432 Query: 61 IIRLKF----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L ++ S+ + E + + + Sbjct: 433 QNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREKGVTLSLVLAEEL 492 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158 + +I NL A +G T ++ F + +G Sbjct: 493 PQAVVGDENRIRQIFFNLVGNAVKFTEKGKIELRLTGLTSEENSARMMLHFEIMDSGCGI 552 Query: 159 R---FPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + T + V L + + + Sbjct: 553 PADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTEGVGTTFFFNI 612 Query: 214 E 214 Sbjct: 613 P 613 >gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1316 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 64/243 (26%), Gaps = 33/243 (13%) Query: 3 KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + L A + + + H+I +P+ AI L L+ + + + + Sbjct: 687 EKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTHLSAKQANYMD 746 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDK 98 S L + ++ + L E IE + ++ Sbjct: 747 KVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEAQQKGIVLNF 806 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKIN 154 + ++ + + ++L+NL A G +++ E IF ++ Sbjct: 807 DLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHGHIQVTQRLTQWVEAQAECIFEVEDT 866 Query: 155 GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G ++ + + L + + Sbjct: 867 GPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMMGGEIGLQSTPGQGSRF 926 Query: 210 SAL 212 + Sbjct: 927 TFR 929 >gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 469 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 25/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55 MA + + + H++ +P+ + E L E + + ++LI Sbjct: 234 MAHALAKEDERKK---EFLANVSHELRTPLSYVKGYSEALLDGVIKEEAQQKKYVRLIHR 290 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110 + ++ + G+ + I Q++E+ I + + + Sbjct: 291 EASRMQRLVRDLLDLAQLEGTYPLVRTPFSIAQLVEETIEKYEPMLQEKNIRLLLDLDHD 350 Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L N+ A P G +++ + + + +G + Sbjct: 351 LIVDGDPDRIEQVLQNVLDNALRYTPSFGTISLRAVNKQPMCELIIADSGCGMSKEDI-E 409 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + + + E + L Sbjct: 410 RLGERFFRADRSRSREHGGTGLGIAIVKQIIKLHGGSIRFESEQGKGTTVYMELP 464 >gi|197302290|ref|ZP_03167349.1| hypothetical protein RUMLAC_01017 [Ruminococcus lactaris ATCC 29176] gi|197298721|gb|EDY33262.1| hypothetical protein RUMLAC_01017 [Ruminococcus lactaris ATCC 29176] Length = 247 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 18/213 (8%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 S I H+I +P+ I +SL++++ E + + + + Y Sbjct: 35 VSLISHEIRNPLTLISSSLQIMELEHPEVKEFFNWKQTMDDVDFMCSLLNELSDYNNGNT 94 Query: 79 SLIGLGDIEQV---------------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + IEQ+ + G + +++LNL Sbjct: 95 LHLSVFSIEQLLKNIAVSFAISLESEQSVHPIEFTSRIMPDMGSFTGDKIKLEEVILNLL 154 Query: 124 MVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181 A ++ I + + K NG + I + + + Sbjct: 155 RNAKDAVMEQSYRKIRLTADRIDDRIVIRCKDNGCGI-PEDLQKTIFEPFITHKPGGTGL 213 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +K L E + L Sbjct: 214 GLAVSKRIIEAHKGTLSFESKKGPGTTFTVSLP 246 >gi|153812003|ref|ZP_01964671.1| hypothetical protein RUMOBE_02396 [Ruminococcus obeum ATCC 29174] gi|149831902|gb|EDM86988.1| hypothetical protein RUMOBE_02396 [Ruminococcus obeum ATCC 29174] Length = 385 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 71/247 (28%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIR 54 M + + + + L S I HD+ +PI A+ +E + + E M Sbjct: 133 MRRRLKESAE-EKIAMDKENKELISNISHDLKTPITAVKGYVEGIMDGVADTPEKMDRYV 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------------- 99 + + + + + +D+ ++ + D Sbjct: 192 RTIYNKTNEMDHLINELTFYSKIDTNRIPYTFSKLNVEDYFSDCAEEVGLELETRGIQLC 251 Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKI 153 V I + +++ N+ A + + + +Q + ++ Sbjct: 252 YANYVDKDVLVIADGEQIRRVIHNIISNAIKYMDKQNGMKGIIQIRVKDVGDFVQVEIED 311 Query: 154 NGNLARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 NG + F + +V I V + ++ ++ + + Sbjct: 312 NGKGIASKDLPYIFDRFYRTDVSRNSSKGGSGIGLSIVRKILEDHGGKVWATSREGIGTI 371 Query: 209 LSALLEK 215 + +L K Sbjct: 372 MYFVLRK 378 >gi|333011090|gb|EGK30504.1| HAMP domain protein [Shigella flexneri K-272] gi|333012716|gb|EGK32096.1| HAMP domain protein [Shigella flexneri K-227] Length = 679 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 73/232 (31%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q + ++ Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNTNSPDAPRIQRAQQAAERGAL 445 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLTIEIEAQSPAWSAWIDVSQL 505 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1305 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 67/239 (28%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +L++ + + + + H+I +PI I + LEL++ + E+ Q+ S S Sbjct: 660 LMEANAKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHAQKPELRQIHHNLSQSG 719 Query: 61 IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L + + D + L + + V + + Sbjct: 720 LNLLNIVNDVLDFSKIEAGKLNINPSRHVLSDLIHALVQPHSIHANQKEVSFTLWLDPAV 779 Query: 107 EKIDLSRERA--KILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A G + +++ F++ G + Sbjct: 780 AHYLSFDDFRLTQVLNNLLNNAIKFTTMGNIHLAVDVVKETNTEQTLAFTIHDTGIGIKP 839 Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + + ++ Sbjct: 840 EDLSQLFQPFVQVEQSSNRRFSGTGLGLSICYQLVQLMDGDIHATSEVGKGTSFTVIVP 898 >gi|319783400|ref|YP_004142876.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169288|gb|ADV12826.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 380 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51 MA I ++ + V L + + H+I +P+ I + +LL+ + + + Sbjct: 123 MADKIDRQMTHRGAARSVTGLAAMLAHEIKNPLSGIRGAAQLLELSASDEDRALTRLITD 182 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EK 108 F V+ + L ++ + ++ A ++ + Sbjct: 183 ETDRIVSLVDRMEVFSDERPIDRYPVNIHVVLDHVKAIAKNGFAKRIKILEDYDPSLPPV 242 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLK 152 + ++ LNL A ++ + V + F ++ Sbjct: 243 FANRDQLIQVFLNLVKNAAEAIGSDPQGEIVLSTAFRPGIRVSVPGTQDRVSLPLEFCVR 302 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG+ + + D + + + + V + E+ + E L Sbjct: 303 DNGSGV-SEDILPILFDPFITTKPNGSGLGLALVAKIVGEHGGIIECESTP-RGTTFRIL 360 Query: 213 LE 214 + Sbjct: 361 MP 362 >gi|315127469|ref|YP_004069472.1| sensory transduction histidine kinase [Pseudoalteromonas sp. SM9913] gi|315015983|gb|ADT69321.1| sensory transduction histidine kinase [Pseudoalteromonas sp. SM9913] Length = 885 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 55/233 (23%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + I + L + + + H+I +P+ AI E L + ++ Sbjct: 395 LETAIAQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHSDKPTNDKHHLGTILRNS 454 Query: 61 IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSW 104 + + + V + + I + + + + + Sbjct: 455 KHLLELINNILDLSKIEAEKLAVEQTPLNVVQLIHDVESIIKPLAQEKQLSFTINYALPL 514 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +IL+N+ A +G + + F ++ G + Sbjct: 515 PHTINSDITRLKQILINIASNAVKFTEQGQVTITAKYQAPKTLTFVIEDTGIGMSSNQIK 574 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ + LA + + Sbjct: 575 -RLFTPFEQADATTTRRFGGTGLGLCISKNLAQLLGGDVSVTSEVGVGSCFTI 626 >gi|269839880|ref|YP_003324573.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269791610|gb|ACZ43750.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 593 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 74/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55 + +++ + + + + H++ +P+ A+ + +E L+ + + + + + + Sbjct: 354 LLRDVTELRRAETIRQEFVANVSHELRTPVAALKSLVETLEEGALEDEEVARDFLARMHV 413 Query: 56 SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS- 103 ++ + V+ + + + + VD V V Sbjct: 414 EVDKLAQLIEELLELSRIESGKVELRIHPVNLVEVVRAGAERLRPQAERQGVDLEVTVEQ 473 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 + ++++NL A P GG++T+ V E +++ G Sbjct: 474 PEILALADPERIQQVVINLVHNAIKFTPPGGRITVRVYSLDREVAVTVQDTGVGIEPELL 533 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 F + + + + L ++ R+ E + L Sbjct: 534 DRLFERFFKVDRARSAGGTGLGLAIAKHLVLAHRGRIWAESEGMGKGARFTFTLP 588 >gi|210613372|ref|ZP_03289692.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787] gi|210151214|gb|EEA82222.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787] Length = 470 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 65/217 (29%), Gaps = 21/217 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + HD SP+ +I LE + + ++D+ ++I + + + + Sbjct: 251 ANVSHDFRSPLTSIKGYLEAMADGTIPVEMQDKYFKIILFETERLTDLTQDLLTLNQFDT 310 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------------LSRERAKILLNLF 123 L + A + I R+ ++L NL Sbjct: 311 KNMLLDKTSFDIHEVIKNTAATFEGTCTGKRISIKLLFATKVLNVSADKRKIQQVLYNLL 370 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID--S 178 A P ++ I + + S+K +G + + + ++ D Sbjct: 371 DNAIKFSPNDSEIIIETTEHNEKVFVSVKDHGIGIPKKSLNKIWERFYKTDLSRGKDKKG 430 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +K + + + L+K Sbjct: 431 TGLGLSIVKEIIQAHKQNINVVSTEGVGTEFTFSLQK 467 >gi|209547459|ref|YP_002279377.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538703|gb|ACI58637.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1211 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLI 53 + + + + +L L + I H++ P+ A+ + L+ E + + + Sbjct: 973 LRQAREGLARASQVASLAELSASIAHEVNQPLAAVVANSHACQRWLMAEPPNMERAQRTV 1032 Query: 54 RLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 K +T + ++ V+V Sbjct: 1033 ERIIRDANSAADVVSRIRALFKQSADRRVHTTLFGVVDEARNLMAAEAARRRARIDVEVD 1092 Query: 104 WTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLAR 159 + ++L+NL ++ + V+ N + G Sbjct: 1093 GNLPLIAIDRVQIQQVLINLIRNGIEAMDTVDGDRVIGMRVRHMGNAIQTEISDRGQGI- 1151 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + + + RL E D H L L Sbjct: 1152 --EFPEKMFEPFFTTKENGMGMGLAICRSIVELHGGRLWAEKNDPHGATLIFTLP 1204 >gi|148270553|ref|YP_001245013.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] gi|147736097|gb|ABQ47437.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] Length = 720 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + +R+ H+I +PI I + LD+ + + +I +K + Sbjct: 506 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYVNIITNELSRLETIVKEILEYSKE 565 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124 ++ + + +K +++ + + ++L+NL Sbjct: 566 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRIDADRTRIKQVLINLVQ 625 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A + GK+ I+ +D S+ +G E +I + + Sbjct: 626 NAIEATGENGKIKITSEDMYTRVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 684 Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 + E+ ++ E ++ VV + K Sbjct: 685 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 715 >gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] Length = 821 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEV------------- 43 +++ + AL + + H++ +P+ A+ E++ Sbjct: 564 LSRKYSEEKEKAERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPSYKEY 623 Query: 44 --GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRV 100 I L+ + + + +D + + + Sbjct: 624 AKDILMSGQHLLDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEKAIDL 683 Query: 101 QVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + D+ + +++LNL A R G +T+ V+ + F + G Sbjct: 684 VLEAEDNLPDIDADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGTDIYFGVTDTGIG 743 Query: 158 ARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + ++ + + + A + R+L I ++ Sbjct: 744 IPAEDLP-RLAQPFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGTTVAF 802 Query: 212 LLE 214 +L Sbjct: 803 VLP 805 >gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 575 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 72/238 (30%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + H+I +P+ + +LD+ + + ++ + S Sbjct: 190 LQRKSEQAEEATRVKSEFLATVSHEIRTPLNGVLGMARVLDDGSLRPDQSDQVQAITRSG 249 Query: 61 IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQV 102 + L + T D + + Q+ ++ + Sbjct: 250 EVLLSTLNDVLDLSRIEEGLMVVETRPFDLPAMINGVAQLYVITAAEKSVEFFIEISPDL 309 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP 161 T +++ +IL NL A + +S ++ ++ F+++ G Sbjct: 310 DLTQKRVGDENRITQILHNLLSNAIKFTAEGRVDLVVSPGETPSDIRFTVRDTGIGMSEA 369 Query: 162 EK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + + + LA R+ + +A L+ Sbjct: 370 EVRRVFERFTQADQSTSRKYGGSGLGLCIASQLATLMGGRIDVQSEPGVGSCFTASLK 427 >gi|227543946|ref|ZP_03973995.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A] gi|300909696|ref|ZP_07127157.1| sensor histidine kinase [Lactobacillus reuteri SD2112] gi|77745271|gb|ABB02536.1| signal transduction histidine kinase [Lactobacillus reuteri] gi|227186062|gb|EEI66133.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A] gi|300893561|gb|EFK86920.1| sensor histidine kinase [Lactobacillus reuteri SD2112] Length = 491 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50 M + + +D + S + H++ +P+ I LE+L G +D + Sbjct: 246 MFNEMLDRMQRYIDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPKVLDDSIKATL 305 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105 + ++ + + ++ + + + + D ++ Sbjct: 306 IETRRMKNLVQEMLDLSRAEQVEINFRNQHTIVNDVVHQVYNNFKMLYPDFTFRLDDDLK 365 Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 ++L+ L A K + ++ G PE Sbjct: 366 EPIMVDIYRDHLEQVLVILCDNAVKYSTDDHKEIHIILSRGMNTVEIGIQDFGEGI-SPE 424 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + L + E + +L Sbjct: 425 NVKRVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSVGAGSLFRIILP 482 >gi|146276766|ref|YP_001166925.1| integral membrane sensor signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145555007|gb|ABP69620.1| integral membrane sensor signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 604 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 22/224 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDEVMQLIRLSSMSAI 61 S L AL + + + H++ P+ A+ L +LL Q I Sbjct: 374 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRRRTEEALASFQRIDDLIERMG 433 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKIDLSR 113 + ++ G + + + +++V + Sbjct: 434 AITRQLKSYARKGGEAFEPVDVRICVSSALTMMEPQLKIRVVRITRTLPRQPVMVMADRL 493 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++++NL A + I + + +++ NG E + + Sbjct: 494 RLEQVIINLLRNALDATKGVASPQIDIVLAAGETATLTVRDNGQGI---EDLDNLFEPFY 550 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + RL + V L Sbjct: 551 TTKKPGEGVGLGLAISSGIVTDLGGRLTARNAEGGGAVFEVQLP 594 >gi|296332738|ref|ZP_06875198.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673083|ref|YP_003864755.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150018|gb|EFG90907.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411327|gb|ADM36446.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 472 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 64/239 (26%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 MAK + + + + H++ +P+ I+ +E L+ +D+ L Sbjct: 229 MAKKLKQSRDEIDRLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288 Query: 53 IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I + + +K ++ + + + +Q Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLEQQAKEKQNKLTIQ 348 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 V +IL+N+ + G ++ K ++ G Sbjct: 349 VEDHIIVHADYDRFIQILVNITKNSIQFTRNGNIWLRGLEGYKETI-IEIEDTGIGISKE 407 Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + V L ++ + + L Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVKQLVEMHQGTVEIKSEKGKGTTFIIRLP 466 >gi|253575400|ref|ZP_04852738.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845397|gb|EES73407.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 459 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51 +A+ L S++ S H++ +P+ AI +L++L + + E++ Sbjct: 220 LAETFNEMLDSLEKAFVSQRRFISYASHELRAPLTAIRGNLDILQKNVNIPSEEKAEILS 279 Query: 52 LIRLSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VS 103 + + + + G VD L ++E I+ + Sbjct: 280 DVSKEAKRMSKLVGDLLSLARADAGHEIQKGIVDISNILNELESRIQSSNHKMEITFEYQ 339 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +++L L A P GK+T+S + + G + Sbjct: 340 LSVMAWGNEDLLKQLILILLENAIRYTPDSGKITLSTFQDSDYCGVQVADTGIGIEPDDM 399 Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 T + + + + + + + L K Sbjct: 400 PHIFDRFYRSKSARMHTSEGTGLGLALAKSIVDLHDGSIGVTSVPGQGSLFKVSLPK 456 >gi|228956808|ref|ZP_04118593.1| hypothetical protein bthur0005_3470 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802849|gb|EEM49682.1| hypothetical protein bthur0005_3470 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 369 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCYLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 367 >gi|224368411|ref|YP_002602574.1| sensory histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223691127|gb|ACN14410.1| sensory histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 874 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 69/242 (28%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + M+ + +L I HD + + AI +L G +EV++ Sbjct: 493 MLQAQLIQSQKMEAIGILAGGIAHDFNNILSAIMGYTQLAAVLIPKDNKAQGKLEEVLKA 552 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKID 110 ++ + L F R +V + ++ +++ + + ++ + Sbjct: 553 SSRAANLIMQILSFSRQTEQKKSTVFLRPIVKEVLKLLRATLPPTIEIKENLTGKQKVNA 612 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT----------------ISVQDSKNENIFSLKIN 154 + +I+LNL A +L + + S+ Sbjct: 613 DPGQIYQIILNLCTNASQALGQCPGMIEVTLESVDIDPSVGEGYFDLPKGQYVKISVADT 672 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G+ + +I + + + + + + E + Sbjct: 673 GSGI-PEDIKKRIFEPYFTTKAKNTGTGLGLATTHGIIKKYGGDIRFESQVNKGTTFHVY 731 Query: 213 LE 214 L Sbjct: 732 LP 733 >gi|218442076|ref|YP_002380405.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218174804|gb|ACK73537.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 482 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 61/237 (25%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 KN+ + LV + H++ +P+ AI ++ ++ + + + Sbjct: 240 EKNLQATNQQLSLVCEQLQRFTANASHELRAPLAAILSNAQMGLLTPNQAQSRHRLEKVV 299 Query: 58 MSAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + +++ ++ T Sbjct: 300 ELTKSMSVLVNDLLFLARYEGVNLRQEFKVVDLVNLLQPLTQEWQNRAYSYNLTLTSYWP 359 Query: 110 DLSRERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 S + ++NL A P GG + V + I ++ NG + Sbjct: 360 QSSIMVMAESNLLRQAIVNLLSNACRYTPAGGSIYFKVFCQNLKAIVEVEDNGIGIPTQD 419 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + +L Sbjct: 420 LPHIFERFYRVDTMRSRSTGGFGLGLAITKQIIEAHGGHIDVSSTLEKGTIFQIILP 476 >gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei B7210] Length = 988 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 485 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 544 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 545 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 604 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 605 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 664 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 665 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 724 Query: 208 VLSALLE 214 ++ L Sbjct: 725 TVTVALP 731 >gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] Length = 1035 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 532 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 591 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 592 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 651 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 652 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 711 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 712 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 771 Query: 208 VLSALLE 214 ++ L Sbjct: 772 TVTVALP 778 >gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 1048 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + L+ +D S + H+ +P+ + LE L + GI + + ++ + Sbjct: 326 ERRRAEALAELDRAKTRFFSNVSHEFRTPLTLMLGPLEEALRDPGIAPGSRKELEVAHRN 385 Query: 60 AIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104 A+ L+ + ++ D D+ + + + Sbjct: 386 ALRLLRLVNTLLDFSRVEAGRVEATFAPADLAALTADLASTFRSAVERGGLALRVDCLPL 445 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161 K++LNL A G + + + + ++ G P Sbjct: 446 PETVFVDRDMWEKVVLNLLSNAFKFT-FHGSIDVRLGPGPADVCLTVADTGVGIPAEALP 504 Query: 162 EKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G + I V L + + + L Sbjct: 505 HVFDRFHRIEGTRSRSHKGSGIGLALVRDLVSLHGGDVEVRSTLGQGTTFTVTLP 559 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 A+ + + + A+ L + HD + + A+ SLEL + ++ ++L+ + + Sbjct: 740 AEAQEQAVQTRKMDAIEQLTGGVAHDFNNLLAAVMGSLELAERKVTDERALRLLHNAMQA 799 Query: 60 AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 A L F VD L + + + + V + Sbjct: 800 AQRGARLTEQLLAFSLKQRLEAHPVDLNGVLSAMAEQLHRTLGGGTAVVTRLAADLWPAV 859 Query: 113 RERAKILLNLFM---VAHASLP------------RGGKVTISVQDSKNENIFSLKINGNL 157 + +I L + A +L G + + + ++ G+ Sbjct: 860 ADPHRIELAVLNLVTNARDALQGAGEIRIETENLPAGAPRPGTVPAGDLVVLTVADTGDG 919 Query: 158 ARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P+ + + + + V A + + S L + Sbjct: 920 M-SPDVLARAFEPFFTTKPQGKGTGLGLAQVYGTARQLGGAITLRSRHGEGTTASIYLLR 978 >gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] Length = 622 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 59/234 (25%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + + + + + L + + + H+I +P+ AI +L E +E +Q + Sbjct: 386 LKETERMLIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSMLQEADNPEEKLQYV 445 Query: 54 RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + + L+ F + L Q+ + Sbjct: 446 TIIEENNKRLLQLISDILDLSKIEAGTFDFTFEKVNAKRLCNELYQAMQMRTSPQVELRL 505 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + ++L N + A G E FS++ G Sbjct: 506 SPDLPDLQLTSDKSRLYQVLSNFVVNALKFTSEGSITISYQIK-GKEAKFSVEDTGIGIE 564 Query: 160 FPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + I + + + ++ + Sbjct: 565 PEKQTAVFNRFVKLNNFIPGTGLGLSICQSIITQLGGKIGVDSEPGKGSCFWFT 618 >gi|147668774|ref|YP_001213592.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] gi|146269722|gb|ABQ16714.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] Length = 433 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%) Query: 2 AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 K + + M + HD+ +P+ +I +S +L + + + L S Sbjct: 192 EKKLRKRIQTEMKSRLEFTRIVVHDLKTPLTSIISSSGVLSNIAADGKYKALASNIYEST 251 Query: 61 IIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + +++ V V Sbjct: 252 MNLNIRLDELLDMAQCEVRDPKLNKSRFNIKEMLEHIISIQQEICNTNHIVFNIVIAPEV 311 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I +IL NL A G ++I++ +N +FS+ +G E Sbjct: 312 TFIIADEDRLKQILDNLIDNAIKYSADSGIISINISHDQNNVLFSISDSGIGIEPGEIKN 371 Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + R+ E + Sbjct: 372 IFKPYYRVENRQRKLQGLGLGLSIVRTYVKLHGGRIWVESECGKGTTFLFTIP 424 >gi|92115976|ref|YP_575705.1| periplasmic sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91798870|gb|ABE61245.1| periplasmic sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 722 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 74/237 (31%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMS 59 +N + M+ + L + HD + + I S++ L + + ++L+ + ++ Sbjct: 337 ENALRHAQRMEAIGQLTGGVAHDFNNLLMIISGSVQRLRRELTDKKSLRLLDMIGTATHR 396 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------ 113 + + +I L V+ + + R + E D Sbjct: 397 GETLTRHLLTYSRRQTLTPEVIDLAQRLPVLRELLTRSLRTDIEINVEVPDTVCAVRVDP 456 Query: 114 -ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARF 160 E +LNL + A ++P GG +++S + + + G Sbjct: 457 SEFELAILNLAVNAKDAMPNGGALSMSARPVTLKGDASEEGLSGDFVAVYVADTGQGI-P 515 Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + + + V A ++ + ++ L + Sbjct: 516 ADVMMRVFEPFFTTKDVSKGTGLGLSQVYGFAKQSGGTATVTSTEGQGTTVTLYLPR 572 >gi|332188134|ref|ZP_08389864.1| sensory box protein [Sphingomonas sp. S17] gi|332011848|gb|EGI53923.1| sensory box protein [Sphingomonas sp. S17] Length = 511 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + + L A+ + S + H++ P+ A+ LE + ++ E + Sbjct: 267 LKELQAELVHVSRLSAMGTMASTLAHELNQPLAAVALYLETIRDMLDERDDEPFVSLRSV 326 Query: 51 -----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101 Q + F+ + + + Q+ + Sbjct: 327 MDDAAQETLRAGHIVRRLRDFVARGEVDKSLHELPQVIAEASQLALVGARERGIRSFFAV 386 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLA 158 + + ++L+NL A ++ + +++ G Sbjct: 387 DPAATPVLVDRVQIQQVLVNLMRNAIEAMAECPVRDLKVATRLRPDGLIEVTVEDTGPGI 446 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E Q+ + D + + + R+ E D L Sbjct: 447 -ADEVREQLFTAFNSTKADGMGLGLSICRTIIEAHGGRIWMERPDRGGTCFHFTL 500 >gi|322385261|ref|ZP_08058907.1| sensor histidine kinase [Streptococcus cristatus ATCC 51100] gi|321270684|gb|EFX53598.1| sensor histidine kinase [Streptococcus cristatus ATCC 51100] Length = 344 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 77/236 (32%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + S ++ +++ HDI +PI +I ++E + + + + I Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165 Query: 57 SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103 + ++ + + LI + Q++ + D +QVS Sbjct: 166 TERLNKLVEELDVLTLNAQPRIESDGEAEIVFLDQLLIEVMSEFQLLIEQEERDIYIQVS 225 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 KI ++ ++IL+NL A G K+ + Q + S+K G + Sbjct: 226 PESAKIKSHYDKLSRILVNLLNNAFKYSDPGTKIEVVAQLTGQILTISVKDEGQGIAPED 285 Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F ++ H + LAH+ + E + L Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVESQCGLGSTFTFTL 341 >gi|288958495|ref|YP_003448836.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910803|dbj|BAI72292.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 589 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMS 59 + + L + D + H+ +P+ I ++ +LL + E+++ + + S Sbjct: 358 ERALERELQARDQQRQFLGMVSHEFRTPLAIIDSAAQLLAMRAGQVEPEMLERLAVIRGS 417 Query: 60 AIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQVSW--TG 106 + VD + ++ Q + Sbjct: 418 VQRLTGLIDAHMTDERLQRNALVLELAEVDLPDLIRNVVQPFRVAYPDREFRMTLDGLPR 477 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163 + A +L NL A GG + + + + + G E Sbjct: 478 RAEIDANLIALVLSNLVNNAVKYSGPGGPIHLHGETDGAMAVIEVTDRGRGIPEGELPRL 537 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G S + I + V + H + + + L Sbjct: 538 FDRFFRGAGASGVPGTGIGLHTVQQIVHLHGGAVAVDSEPGTGSTFRILFP 588 >gi|317052559|ref|YP_004113675.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316947643|gb|ADU67119.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 502 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEV 49 + + S L ++ + + + H I +P+ I L++L + + Sbjct: 264 LESTLNKLAHSSKLASIGRMAAGVAHQINTPLTNISLGLDMLKKQARITMAPDDPQYSKC 323 Query: 50 MQLIRLSSMSAI-------IRLKFMRLAFGYTGSVDSLIGLG-DIEQVIEDFIAVDKRVQ 101 M I + L F R ++ + QV + R Q Sbjct: 324 MNRIEAIERNLQKAAMVARELLLFSRQKETDFLPLNLNQVIMGACRQVEQQLKGYTVRYQ 383 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + + +I +NL A + P GG +T+ + + G Sbjct: 384 LQKVPPMLGIPWKLEEIYVNLLNNAMDATPPGGTITLVTELDGKTIRSRIIDTGAGI-AS 442 Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + D + + + + + + + E + Sbjct: 443 EHKAMLFDPFFTTKPEGKGTGLGLFICYGIIQMHNGNIAIESSLGKGTTVIMEFP 497 >gi|239904838|ref|YP_002951576.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239794701|dbj|BAH73690.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 478 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 30/234 (12%) Query: 10 SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----------------M 50 + + +L + + H+I +P+ A++ E + + Sbjct: 238 QAEKMATIGMLAAGVAHEINNPLTAVYGLAEGIRRRLPAIRQAVDDDLYGDVAEYTETIL 297 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 R L F R V + D +++ + + T Sbjct: 298 MECRRCRDIVRSMLSFSRPHTLAFSPVCLNEVVTDTLNILKSRLEDRAAAGLRLTVNLHQ 357 Query: 111 -------LSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++LLN+ + + ++ G + ++ N S++ G P+ Sbjct: 358 GLPTVPGDEAQLKQVLLNILVNSMDAIEGEGEITITTHPENDNTVNLSVEDTGRGI-PPD 416 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + I + E+ + + L Sbjct: 417 NMDKLFNPFFTTKPVGQGLGIGLSTCYSIVREHHGVIEVASEVGIGTHFTVKLP 470 >gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2] gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2] Length = 984 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + + +++ + S Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105 L + Y+ + + + + + T Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVT 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKF 164 ++L NL +G F+++ +G E+ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLALDGQGIRFAVEDSGIGIAEEEQA 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L L L Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690 >gi|94967551|ref|YP_589599.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94549601|gb|ABF39525.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 751 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + L S + AL L + HD + I I EL + D + Sbjct: 359 LQTSQEQLLRSARMEALGRLAGGVAHDFNNLITIISGYGELALDKSSGDPQLTSFIQEIR 418 Query: 59 --------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L F R +D L +I +++ + D ++ + Sbjct: 419 KAGERATGLTRQLLAFSRKQVLQAQPLDLNAILSNINKMLRVLVGEDVQLVIVQGAGMPT 478 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDS--------------KNENIFSLKI 153 + + +I + A ++P GG + ++ + + ++ Sbjct: 479 VMADPGQIEQVIMNLTANARDAMPGGGTLGMTTSVQSGDALTVPSGEKAAERYVVLAISD 538 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + I + + + V + ++ L + Sbjct: 539 TGTGM-TQDTIKHIFEPFFTTKAPGKGTGLGLATVYGIVQQSGGFLEVQSELGKGTTFRV 597 Query: 212 LLE 214 L Sbjct: 598 CLP 600 >gi|94270081|ref|ZP_01291647.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93450946|gb|EAT01937.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 709 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS----- 56 K+ F S+ +L + HD+ P+ I++ + LL+ + + + Sbjct: 467 EKSAEFQRSNAELE-QFAYVVSHDLRQPLRMINSYMGLLERDLNDKLTDETREMMGFAVG 525 Query: 57 --SMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + D + V++S + Sbjct: 526 GARRMDQMLVSLLEYSRVGRKGEPMAPLASRQPVDEAIRFLEPDIAEANATVRISGQWPE 585 Query: 109 IDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165 I SR+ ++ NL A + + F++ NG + F Sbjct: 586 IVASRDEFTRLWQNLIGNALKYRDPDRPPDVDIAVTPEDGGWRFTVADNGIGIDPQQ-FD 644 Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 ++ + I + + R+ E L K Sbjct: 645 RLFKVFQRLHARDKYEGTGIGLAVARKIVERHGGRIWVESEGAGQGCRFIFTLPK 699 >gi|326440160|ref|ZP_08214894.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 408 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 48/223 (21%), Gaps = 24/223 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 178 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADASRVTRLIAELLD 237 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 VD +G Q R V L + KI Sbjct: 238 ISRIDSGRLEVRRQPVDIAAAVGRHVQAHMASGQGSDRFFVRVRRGLPALWADPDKIDQV 297 Query: 122 LFMVAHASLPRGGKVTISVQDS----------KNENIFSLKINGNLARFPEKFTQIVDGN 171 L + ++ G + ++ G Sbjct: 298 LGNLLENAVRHGAGTVTIEVAPVAATGGESGAERGTAVTVSDEGPGIPEESMSRVFTRFW 357 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + L Sbjct: 358 RGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPGGGAEFRFTLP 400 >gi|298481754|ref|ZP_06999944.1| two-component system response regulator sensor kinase [Bacteroides sp. D22] gi|298271976|gb|EFI13547.1| two-component system response regulator sensor kinase [Bacteroides sp. D22] Length = 754 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44 K+ L + L+A + + H+I +P+ +I +L Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572 Query: 45 -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +++LI + I +M +F + + + QV+ + Sbjct: 573 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 632 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 E ++L N A K+ S + + ++ G Sbjct: 633 EVDDTPLEINVDRERLIQVLTNFLNNAGKFTETGYIKLGYSYLPDEGKVQIYVEDTGRGI 692 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + ++ + ++ + + +L Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 749 >gi|294811656|ref|ZP_06770299.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294324255|gb|EFG05898.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 422 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 48/223 (21%), Gaps = 24/223 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 A L + + H++ SP+ ++ L +++ + + + + Sbjct: 192 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADASRVTRLIAELLD 251 Query: 70 AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 VD +G Q R V L + KI Sbjct: 252 ISRIDSGRLEVRRQPVDIAAAVGRHVQAHMASGQGSDRFFVRVRRGLPALWADPDKIDQV 311 Query: 122 LFMVAHASLPRGGKVTISVQDS----------KNENIFSLKINGNLARFPEKFTQIVDGN 171 L + ++ G + ++ G Sbjct: 312 LGNLLENAVRHGAGTVTIEVAPVAATGGESGAERGTAVTVSDEGPGIPEESMSRVFTRFW 371 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + L Sbjct: 372 RGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPGGGAEFRFTLP 414 >gi|218531287|ref|YP_002422103.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523590|gb|ACK84175.1| histidine kinase [Methylobacterium chloromethanicum CM4] Length = 632 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53 + + L A+ L + HD + + I +S +LL + E + Sbjct: 246 ERTEEALRQAQKLEAVGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAPERRERYVAAISD 305 Query: 54 --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L F R + + + ++ R+ + Sbjct: 306 TVDRAAKLTGQLLAFARRQSLKPEVFAACDSVRALSDMMGTLTGSCIRIVTDLPEGTCFV 365 Query: 112 SRERAK---ILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKING 155 ++++ L+N+ + A ++ + S+ G Sbjct: 366 HADQSQFDTALVNMAVNARDAMEGEGQLTIRVLGVEGMPPIRGQAAVEGPYVAVSISDTG 425 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ +I + + + V A ++ + H + L Sbjct: 426 VGI-PGDRLERIFEPFFTTKGVGQGTGLGLSQVFGFAKQSGGEVTVASGLGHGATFTMYL 484 Query: 214 EK 215 + Sbjct: 485 PR 486 >gi|119512919|ref|ZP_01631982.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414] gi|119462415|gb|EAW43389.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414] Length = 632 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 ++ ++ + L S I HD+ + + I + +LL+ ++ +L+ + +A Sbjct: 252 ESQFLRAQRLESIGTLASGIAHDLNNVLAPIMMTAQLLESQMHDERSRRLLPILISNAKR 311 Query: 63 -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 L F R G + + +I+Q+I++ V +S + Sbjct: 312 GASLVNQVLSFTRGLEGERTLLQLKHLIIEIQQIIKETFPKSIEVTSQIPPHLWTVSGDA 371 Query: 116 ---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNL 157 ++L+NL + A ++P+GG + + ++ G Sbjct: 372 TQLHQVLMNLCVNARDAMPKGGNLKILAENLLVDENYARMNIDTQIGSYVVITVMDTGMG 431 Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + V+ + + + + + L Sbjct: 432 I-SPEILDRIFEPFFTTKETGKGTGLGLSTVMGIINSHGGFVKVQSQPGKGSQFQVYLP 489 >gi|152974105|ref|YP_001373622.1| integral membrane sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022857|gb|ABS20627.1| integral membrane sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 338 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + K S L S I HDI +P+ +I ++ L + E + Sbjct: 96 LEKVQIEAKKSQKARKQLLSSISHDIRTPLTSIIGYIDALKDGIATSKEEELEYLEILSN 155 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------S 103 LK + + +D+ EQ+ I + ++ Sbjct: 156 KSNSLKQLVDEIFHMAKIDADELPFKEEQLDLSEITRETLIEFLPELSKYHIELKIDIPE 215 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 S +++ NL A +G + + + + NE + G + Sbjct: 216 KPCLITGDSFHIIRVMNNLIKNAIHYGKQGAILGVKLLEHHNEYHILVWDKGPGIPHQDL 275 Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + + S + L +++ R+ E I + K Sbjct: 276 EHVFERMYRIDQSRTLSSRSSGLGLAIAKALVEKHRGRIWVESIPWERTTFGFSIPK 332 >gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 751 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + + I S+ L + + H+I +P+ A+ +L+ + + + R + Sbjct: 363 LEREIAARSSATKSAFL--ATVSHEIRTPLNAVLGVADLMTATPLSDEQRRHVDVFRHAG 420 Query: 58 MSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104 + + + L + +++ A V Sbjct: 421 QTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAAAKGLRFVLDVDEDL 480 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R + L NL A RG + + + F+++ G ++ Sbjct: 481 PAWVSGDRRRVEQALTNLLGNAIKFTARGEVSLQAARSAAGGVRFTVRDTGIGIAPAQQA 540 Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + A + L E + L Sbjct: 541 LVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGVGSTFTLELP 595 >gi|313899083|ref|ZP_07832610.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Clostridium sp. HGF2] gi|312956282|gb|EFR37923.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Clostridium sp. HGF2] Length = 468 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 62/231 (26%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + + + H++ +P+ I + EL E + Sbjct: 239 MMDRLEASFQAEK---QVTRDMSHELRTPVTVILSQCELSLEEEQDKSTYADALRLIQRQ 295 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------------VQVSWTG 106 ++ + ++ + Q+ + Q+ Sbjct: 296 GQKMSVLINDMLMMTRMEQKRDSICMVQLDFSSLCASVCEDLRLIREKNIALSWQLEEHV 355 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EK 163 + ++L NL A+ G + + ++ E + S+ +G Sbjct: 356 MVMGNRELLQRLLANLIANAYRYGKEHGHIQVDLKQEHAEVLLSVTDDGRGIAKDQLAHI 415 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + V +A + + E + + + Sbjct: 416 WQRFYQADASRSNQGSGLGLAMVQEIAQLHHGYMKVESVQGKGSCFTFCVP 466 >gi|310824787|ref|YP_003957145.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397859|gb|ADO75318.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 555 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------M 50 + + L AL + S I HD+ + + A+ LE+L M Sbjct: 178 LEQARAALARQEHLRALGEMSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLM 237 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSW 104 Q++ + +F R F + L G+ + ++++ Sbjct: 238 QIVSDAGTRVRHLQEFSRQRFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIEN 297 Query: 105 TGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + + LNL + A ++P GG V + ++ + +++ G Sbjct: 298 EVPVLPAVNGEAADLRYVFLNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQ 357 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L V + Sbjct: 358 DHLDSIFLPFFTTKGAQGTGLGLSMAYGVVSRAGGTLTAANRPKGGAVFTLTFP 411 >gi|226227148|ref|YP_002761254.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226090339|dbj|BAH38784.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 885 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVM 50 + ++ + L AL I HD + + AI + ELL + E++ Sbjct: 511 LEQSREQLRQAQKLEALGAFAGGIAHDFNNYLSAIATNAELLRDELPLLSSHRLEASEIL 570 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + +S L F R + +D + + +++ + V+++ + Sbjct: 571 GAAQRASALTRQILVFSRRQVVHDERLDVNSAIHALRRLLSRLVGEQIEVRITVAPDAPR 630 Query: 111 LSRER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++L+NL A ++P GG + + + + + +G PE + Sbjct: 631 VMFDHGRLEQVLMNLAANARDAMPAGGCLTISTERTTAGDLRLRVSDSGAGI-PPEVLPR 689 Query: 167 IVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + ++ + Sbjct: 690 VFEPFYTTKTRERGTGLGLAMVYSIVTAARGEIVVTSDVGQGTEIVITFP 739 >gi|218887817|ref|YP_002437138.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758771|gb|ACL09670.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1007 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/244 (9%), Positives = 64/244 (26%), Gaps = 32/244 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 K + L + + A+ L I HD + +G + E+ +E + + + Sbjct: 621 RKQLEARLRQAQKMEAIGTLAGGIAHDFNNILGVMMGYTEMSLDQTEEGDAQHRRLTEVL 680 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 + A ++ + + + + V + + Sbjct: 681 AAGRRARDLIRQILTFSRQEEPSRLPLPPLAPIKETVRLLRATLPANVDIRLDLAETGPL 740 Query: 114 -----ERAKILLNLFMVAHASLPRGGKVTI----------------SVQDSKNENIFSLK 152 + ++++NL A ++ G V S+ ++ Sbjct: 741 LANLSQLQQVIMNLCANAAHAMKEHGGVLHLALDAVELDEDEAAARSLPAPGGYARLRVR 800 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ + I D + + + V + + + + Sbjct: 801 DTGHGI-PADIMENIFDPFFTTKKPDEGTGMGLALVHGIVTAHGGAVAVQSTVGVGTEFE 859 Query: 211 ALLE 214 LL Sbjct: 860 VLLP 863 >gi|198274559|ref|ZP_03207091.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135] gi|198272613|gb|EDY96882.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135] Length = 1346 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 24/228 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------------IEDEVMQLIRL 55 L+ L + I H+ +P+ I LE L + +QL L Sbjct: 816 RLNQNKLR--FFTSISHEFRTPLTLIIGQLEKLMQTSQLSPSVYSNVLLAYKSGVQLKEL 873 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111 R + ++ + L + + + + + + E Sbjct: 874 IGELLDFRKQEQGKMKLKVCRMNLVNFLNETYLLFQPYAESKQIHLEFHKSQDDIELWFD 933 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A +P GK+ + V + E FS++ NG+ + + +I D Sbjct: 934 WKQMRKVINNLLSNAVKHVPSQGKIVMEVGVTDEEAWFSVEDNGSGIQPADI-DKIFDRF 992 Query: 172 VESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +S++D I + + ++ E + Sbjct: 993 YQSSLDTEINVGTGIGLALTKGIVELHHGKISVESAQGKGTKFIVRIP 1040 >gi|297582880|ref|YP_003698660.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297141337|gb|ADH98094.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 693 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 26/231 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEVMQLIRL 55 + + L AL + S H++ +P+ ++ E L + G +Q+IR Sbjct: 451 IQTDKLSALGLMASSFAHEVNNPLASVQIYAEDLSDRLTEDEAELLESGDMAHYLQVIRK 510 Query: 56 SSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107 + L F R + + + ++ + + Sbjct: 511 NIDRCKTITGNLLNFSRKENWEERDIRVRQVVEESLVLMNHSLNKQGVDVTVTEEEGLPA 570 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFT 165 + + +++ +N A ++ +I + + + + NG+ R + Sbjct: 571 IRGDALKLSQVFVNFIQNAIDAMAGKTAPALSIRLYQEGQDLLVDVADNGSGIRPEDL-D 629 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D S + + + L E V L Sbjct: 630 KLFDPFFTSKPTGKGTGLGLSVCYGIIKQMNGVLEVESEPGEGAVFRVRLP 680 >gi|148262814|ref|YP_001229520.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396314|gb|ABQ24947.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 644 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 66/242 (27%), Gaps = 29/242 (11%) Query: 1 MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 M + + S L +L L + + H+I +P+ I NS +L+ E Sbjct: 392 MRREKEEAQADAIRSSHLASLGELAAGVAHEINTPVNTIINSADLILESDDRTATEHDAA 451 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108 + + + + + + + + ++ Sbjct: 452 VIKKHGRRIAIIVSSLLFFARRPALEKTPFAVAALLHGTLDMIGARLRQENIAITEQIPP 511 Query: 109 I-----DLSRERAKILLNLFMVAHASLPRGGKVTIS-----------VQDSKNENIFSLK 152 ++ ++ LN+ + A +L + + + Sbjct: 512 DLAEVLVHPQQIEQVFLNILINAMHALDEKHGGGYDGKRLEISASELFINGRPFVRITFH 571 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG PE ++ + V + + + + ++ L E +S Sbjct: 572 DNGIGI-PPELLNRVTESFVTTKQTGNGLGLSICRQIIADHGGFLRIESRVGEYATVSVD 630 Query: 213 LE 214 L Sbjct: 631 LP 632 >gi|227543689|ref|ZP_03973738.1| signal transduction histidine kinase [Lactobacillus reuteri CF48-3A] gi|300908751|ref|ZP_07126214.1| sensor histidine kinase [Lactobacillus reuteri SD2112] gi|77745277|gb|ABB02539.1| signal transduction histidine kinase [Lactobacillus reuteri] gi|227186336|gb|EEI66407.1| signal transduction histidine kinase [Lactobacillus reuteri CF48-3A] gi|300894158|gb|EFK87516.1| sensor histidine kinase [Lactobacillus reuteri SD2112] Length = 443 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 18/226 (7%), Positives = 61/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSM 58 + + H++ +P+ I + L+ G + + + I + Sbjct: 221 RQYQVMQREK---EFIANASHELKTPLAGILGHVNLIRRHGDKHPELIAKSLRYIDQEAQ 277 Query: 59 SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + ++ + + ++ + + + Sbjct: 278 RMSQLINELLILEGHQTKKLTEINLSQVVLAEVKSLQGAYHQKIITDLDPELSYRITTGD 337 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171 ++ NL A P + + + ++ I S+ G + F + + Sbjct: 338 FQSLVHNLLENAAKYSPPDSTINVQLTADDHQIILSVADQGQGIARENREKVFERFYRED 397 Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I V ++ + ++ + + + L K Sbjct: 398 ESHSNKVAGSGIGLAIVKMIIEKYHGKITIRDNEPSGTIFTVYLPK 443 >gi|88809221|ref|ZP_01124730.1| two component sensor histidine kinase [Synechococcus sp. WH 7805] gi|88787163|gb|EAR18321.1| two component sensor histidine kinase [Synechococcus sp. WH 7805] Length = 478 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 56/220 (25%), Gaps = 21/220 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 S + H++ +PI I L + + ++ S + + Sbjct: 245 QFASTVSHELRNPITLIGGYSRRLLRRSDNLSDDQRHQLGIVEEESRRLGRLVTDLLALT 304 Query: 72 G--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKI 118 + + + ++ + + Sbjct: 305 RAETGSLQLDLKPLSVCDAVQQAIDLAGGAGERRFLLRPDDGIDPHTLQAWADRDRVVQC 364 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175 L+NL A P+ V I + + ++ +G E F + G + Sbjct: 365 LVNLIENACKYSPQQSPVEIGCSTTPSVVELRVRDHGPGIPPEERSLIFERFRRGQHNTG 424 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I I V L + + + E + V L + Sbjct: 425 IPGSGIGLAVVSTLVSQMEGEVSVEDGEGGGAVFVISLRR 464 >gi|289432805|ref|YP_003462678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946525|gb|ADC74222.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1262 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 + S L A+ + + I H+I +P+ + +L E E +Q+ Sbjct: 884 EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPADVMEELQI 943 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSW 104 I S + +K M V L V++ R Sbjct: 944 INSGSQRVVEIVKRMLTFARQAKPVRSSVNITELIDSTLDLRSYVLKTANIEVVRHYEPD 1003 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161 S + +++LNL + A S+ + + TI V+ S + NG Sbjct: 1004 LPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGILTIRVKKEGEWVRMSFRDNGLGM-SA 1062 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + E++ + E I + L Sbjct: 1063 ETLGKLFQPFFTTKDPGEGTGLGLSLSHGIILEHEGTIRGESILGEGAEFTIELP 1117 >gi|228967034|ref|ZP_04128071.1| hypothetical protein bthur0004_38380 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792658|gb|EEM40223.1| hypothetical protein bthur0004_38380 [Bacillus thuringiensis serovar sotto str. T04001] Length = 424 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKGETIIIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|298530575|ref|ZP_07017977.1| integral membrane sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509949|gb|EFI33853.1| integral membrane sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 487 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 65/229 (28%), Gaps = 17/229 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + + L + L AL L + + H++ +P+ + + + MQ IR Sbjct: 258 QEELQARLRQAEKLAALGQLAAGVAHELGTPLSVVSGKAQRAQRKKGLPPELNATMQEIR 317 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKI 109 ++ + + + E+ + + +I Sbjct: 318 QEVERMENIIRQLLDFSRRNEQQKRNVSMKQLARSAHASAEEEARNTGHELSIQEPDREI 377 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFTQI 167 + + +I L + +L + ++ F + NG + +++ Sbjct: 378 HIKADPTRIEQALVNLLKNALQSSSNALARISWGEDSGWAWFQVDDNGPGI-SEDIKSKL 436 Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V +A E+ + D + L Sbjct: 437 FEPFFTTKSVGMGTGLGLAVVHGIAEEHSGYVEVGQSDMGGAMFRIWLP 485 >gi|153007213|ref|YP_001381538.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030786|gb|ABS28554.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 667 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45 + L + L AL L + I H++ +P+ AI L +L + Sbjct: 429 LKTAQDQILRTRRLAALGSLGAGIAHELNNPMTAITGYLAILRKQLGPASPQGELISHAQ 488 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E + + + + ++ + E + + Sbjct: 489 EQAARVARVIEDLRSFADQERAAQGQRFSLVRPVRAAVDLYEDRLRAAGIEVRIRFDEPL 548 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164 + + +++ +L A ++P+GG + +SV + + G + Sbjct: 549 PDTQGDPVQLQQVVAHLVENAINAMPQGGVLEVSVGSIDGDALRLRVADTGKGI-PSQLR 607 Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ ++L E + ++ LL Sbjct: 608 ERIFDPFFTTKDQAGRVGLGLSVSHSIVEAHRGKILVESEEGTGSAITVLLP 659 >gi|156743609|ref|YP_001433738.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234937|gb|ABU59720.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1034 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 23/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + + ++ + L + HD + + I S +L L +Q I+ S+ Sbjct: 654 QTQLMHAQRLEAIGRLAGGVAHDFNNILTVISGSADLALTTLPSDSPAYPDIQAIQQSAR 713 Query: 59 SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A ++ + R + ++D + + +I I D R+ + + Sbjct: 714 RATHLVRQLLTFARRQPSHPQTIDVNALIDGMVPLILRLIGEDIRLTWMPAPHPCPIRID 773 Query: 115 RAK---ILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +L+NL + A ++P T + S++ G E Sbjct: 774 PHQFEQVLMNLIVNARDAMPEGGALVIATSQTAPTGDIVVETPYIRISVQDTGVGIPV-E 832 Query: 163 KFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + ++ + E L Sbjct: 833 VKAHIFEPYFTTKAPGQGAGLGLATCLGIVQQHAGFIRCESQPGQGARFDVYLP 886 >gi|110598715|ref|ZP_01386978.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339660|gb|EAT58172.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 604 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 21/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRL 55 +++ + ++L + + + H + +P+ ++ S+ LL E + ++ Sbjct: 365 RDVTQIIEQLELKRSVIATVSHQLRTPLTSLRMSIYLLLEERIGTLNSKQAELLLAAREE 424 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQV-----SW 104 S + I + L +G I ++ A DKRV + Sbjct: 425 SERLSHILDDLLDLNRIESGKAHLNIQPASPFRLATEGVDPFTAEARDKRVNLVNTVPEG 484 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161 E + + NL A P G +T+S + ++ FS+ +G Sbjct: 485 VSEVMADPERIRHVFANLLSNALRFTPPDGSITVSACEDEDNVRFSVANSGEGIASEHLE 544 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F Q + + V + + + E + L Sbjct: 545 HLFEQFYRVPGQRDESGIGLGLSIVKEIVEAHGGTVGAESNPGTGSIFYFTLP 597 >gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] Length = 849 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 69/244 (28%), Gaps = 33/244 (13%) Query: 3 KNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLEL--------LDEVGIE 46 + + N + A + + H++ +P+ AI+ E+ L + Sbjct: 578 QELAANYEQEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQ 637 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105 D V ++ + + ++ G + +VIE + + + + Sbjct: 638 DYVRDILSSGQHLLSLINDILDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSI 697 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 E R +++LNL A P GGKV + + + + + G Sbjct: 698 ELTVEGSELPEITADPRALKQVILNLMSNAVKFTPEGGKVKLRGFQAADGVVLQVSDTGI 757 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + ++ + L + L + +S Sbjct: 758 GISEDDL-QRVGRPFEQIESQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVS 816 Query: 211 ALLE 214 L Sbjct: 817 FTLP 820 >gi|310815577|ref|YP_003963541.1| C4-dicarboxylate transport sensor protein DctB, putative [Ketogulonicigenium vulgare Y25] gi|308754312|gb|ADO42241.1| C4-dicarboxylate transport sensor protein DctB, putative [Ketogulonicigenium vulgare Y25] Length = 411 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 59/225 (26%), Gaps = 22/225 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DEVMQLIRLSS 57 S L AL + + + H++ P+ A+ L LL + + LI Sbjct: 179 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRKRPDEALSAFQRIDDLIDRMG 238 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSR 113 F R D + ++E + K V Sbjct: 239 SITRQLKSFARKGTDAFEPFDMRNAISSALAMMEPQLKARKIAIVRTLPSTPVLVLGDRL 298 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++++NL A + +++ +++ NG + + + Sbjct: 299 RMEQVIINLLRNAFDATQGTPHPEVTITLAQGETVTLTVRDNGPGI---DDLDALFEPFY 355 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + + + RL L + Sbjct: 356 TTKAPGDGVGLGLAISSGIVADLGGRLTAHNATSGGAAFEVQLPR 400 >gi|307256989|ref|ZP_07538765.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864473|gb|EFM96380.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 586 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + D+ + ++ ++SA+ Sbjct: 86 SVLMATISHELRTPLNGIIGLSRILLEGELTDQQREYLKTINISAVSLGHIFSDIIDLEK 145 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSLK G E+ Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306 >gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60] Length = 1520 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 59/245 (24%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + L + L A + + H++ +P+ AI L LL + G+ Sbjct: 743 QRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGLTHRQADYA 802 Query: 54 RLS-------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVD 97 S L + ++ G L ++ Q + + V Sbjct: 803 TKSEAAARALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSSSSRQKPVEVL 862 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKI 153 + S + S ++L+NL A RG F ++ Sbjct: 863 FDIDPSLPHWLVGDSLRLQQVLINLGGNALKFTERGEVTLFIRLLAQDQQTVTLHFGVRD 922 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G ++ + + L E + Sbjct: 923 TGIGIAPEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTLQVESEPGKGSL 982 Query: 209 LSALL 213 L Sbjct: 983 FHFTL 987 >gi|260174381|ref|ZP_05760793.1| two-component system histidine kinase, FrrD [Bacteroides sp. D2] gi|315922648|ref|ZP_07918888.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696523|gb|EFS33358.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 482 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + +N ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENWIELYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481 >gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 19/229 (8%), Positives = 55/229 (24%), Gaps = 25/229 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66 S + + + H++ +P+ I ++++ + ++ L+ + Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDEEQHKQIKVLLESGDHLLSLLNDI 466 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRE 114 + + ++ VI+ + ++ I Sbjct: 467 LDFSKIEQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIIDNNINEKTIFIGDKPR 526 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVD- 169 +I+ NL A +G + ++ G R Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAIQIKVQDTGIGIRKKRLKHIFEPF 586 Query: 170 ----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L K + + + +L Sbjct: 587 IQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635 >gi|218676127|ref|YP_002394946.1| putative sensor protein [Vibrio splendidus LGP32] gi|218324395|emb|CAV25783.1| putative sensor protein [Vibrio splendidus LGP32] Length = 537 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 63/238 (26%), Gaps = 29/238 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + L + + H+I +P+ I E+L + + +++ S+ Sbjct: 34 AKEDAISANKAKSAFL--ANMSHEIRTPLNGIIGMAEILSQSQLSANQQEVLEDIESSSH 91 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + L+ +++ + ++ + + Sbjct: 92 SLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDINIDAQTP 151 Query: 108 K--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 ++L NL A +G T + + S+ +G P Sbjct: 152 TQLFFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKLECSVSDSGIGI-EP 210 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 EK I + + + L + + + L Sbjct: 211 EKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGGGSTFTFCL 268 >gi|222110689|ref|YP_002552953.1| pas/pac sensor signal transduction histidine kinase [Acidovorax ebreus TPSY] gi|221730133|gb|ACM32953.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax ebreus TPSY] Length = 465 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 21/247 (8%), Positives = 65/247 (26%), Gaps = 34/247 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 +++++ + + + + H+I +P+ + +E L ++++ Sbjct: 192 LSRDVTALEQAEAMRRDFVANVSHEIRTPLTVLMGFVETLQTLQLSNEERARYLRMMSQQ 251 Query: 57 SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ ++ + + + G + K Q+ Sbjct: 252 AVRMQNLVQDLLTLSRLEGSPPPSMHEWVAVSTLLRRCEDEGRALSALLTQNQPGKPHQI 311 Query: 103 SWTGEKIDLSRERAK--------ILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKI 153 ++ + + + L NL A P G + F ++ Sbjct: 312 TFPTAEAAQAAGQVAGNAAELQSALANLVNNAVRYTPPGGSITVAWDVEPDGSARFMVRD 371 Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 +G PE +I + + V + + L + Sbjct: 372 SGPGI-EPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALQVASVVGQGS 430 Query: 208 VLSALLE 214 + + Sbjct: 431 TFTVVFP 437 >gi|168798240|ref|ZP_02823247.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC508] gi|189379117|gb|EDU97533.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC508] Length = 756 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 70/232 (30%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 389 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 448 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 449 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 508 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ +VT S ++ + +G + Sbjct: 509 ENAIINLVMNVRDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGCGM-SQAVKS 567 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 568 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 619 >gi|167748369|ref|ZP_02420496.1| hypothetical protein ANACAC_03113 [Anaerostipes caccae DSM 14662] gi|317472096|ref|ZP_07931428.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|167652361|gb|EDR96490.1| hypothetical protein ANACAC_03113 [Anaerostipes caccae DSM 14662] gi|316900500|gb|EFV22482.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 497 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + ++I + L S I HD+ +PI AI +E + + E M + + Sbjct: 249 LKESIEARIIYEKQNRDLISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTIYN 308 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + +DS I + ++ + D ++ E+ + Sbjct: 309 KANDMDVLINELSLYSKIDSNIIPYNFRKIDINAYFKDCVDEIGSDLEQKGMMFSYSNYC 368 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFP 161 +++ N+ A + + ++K NG Sbjct: 369 SANVAVMADPEQLKRVMNNIINNACKYTNKAKGKVSITLKELDRKIQVAIKDNGIGISKE 428 Query: 162 E---KFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + ++ + + E+ + E + L K Sbjct: 429 DLPNIFRRTYRADMSRNSAGGSGLGLSICKKIIEEHGGEIWAESRLRSGTTIFFTLNK 486 >gi|197120363|ref|YP_002140790.1| GAF domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197089723|gb|ACH40994.1| sensor histidine kinase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 765 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 62/233 (26%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57 +++ L L A+ + + I H++ P+ +I L + L Sbjct: 532 LSEAQENLLQKERLAAIGEMAAGIAHELKGPLVSIGGFAGRLARKLPQDTSEWAHADLIV 591 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ D+ V V + K+ Sbjct: 592 REVLRLEGILSEILLFSKKTTICYTRCDLSEVVKESLAVVTPPLEEKQISVNAKFPRHKL 651 Query: 110 DLSRERA---KILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162 L + ++ +N+ + A ++ +V+ + D K + G E Sbjct: 652 LLLGDGQQLKQVFINIILNALDAMGTGGALNIQVSAAEMDDKEAVQVKISDTGGGIPL-E 710 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + + + ++ V +L K Sbjct: 711 SLNSIFTPFFTTKGSGTGLGLPIANRIITNHGGKIQVTNNPGLGVEFRVILPK 763 >gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] Length = 1032 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 529 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 588 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 589 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 648 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 649 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 708 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 709 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 768 Query: 208 VLSALLE 214 ++ L Sbjct: 769 TVTVALP 775 >gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818] Length = 2374 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 N+ + ++ + I HD+ +P+ + ELL + + V + + Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106 + + + G + I + + V+ + Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDL 1994 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + +I +NL ++ P G ++ + + G + Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 ++ + + + + R+ + + ++ L Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|325686294|gb|EGD28333.1| phosphate regulon sensor histidine kinase protein PhoR [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 552 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ E + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHRIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK+ I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKIKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541 >gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 606 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 58/233 (24%), Gaps = 31/233 (13%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ A+ E L ++ + +Q+I S + Sbjct: 372 ERIRSEFVANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNRLIGD 431 Query: 67 --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRER 115 + VD + + Q+++ V Sbjct: 432 ILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENELYIEADEDRL 491 Query: 116 AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +IL+NL + P ++ + G + +I Sbjct: 492 RQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGIPEKDLP-RI 550 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L + + E + L Sbjct: 551 FERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIELP 603 >gi|295690957|ref|YP_003594650.1| multi-sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295432860|gb|ADG12032.1| multi-sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 495 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVMQLIRL 55 + + + L A+ + S + H++ P+ AI N L L E G E + ++ Sbjct: 245 LQELQNELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMERGRESDQAKIRDA 304 Query: 56 SSMS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSW 104 + F+R + + + + V+++ Sbjct: 305 IDRAAAQALRAGEVIHRMRDFVRRGASEREAESLSKLIEEASALALIGEKERQVDVRLNL 364 Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTI-----SVQDSKNENIFSLKINGN 156 + + +R ++ L ++ S + + S+ G Sbjct: 365 DPKADAVFADRVQVQQVLLNLIRNGIDAMQVQDPKKRALLISSAMTEEGWSQVSVDDTGP 424 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + + R+ E L Sbjct: 425 GI-ADEVRERLFQPFMTTKPQGMGVGLSISRSIIEAHGGRIWAEANSAGGARFCFTLP 481 >gi|259503599|ref|ZP_05746501.1| sensor histidine kinase [Lactobacillus antri DSM 16041] gi|259168423|gb|EEW52918.1| sensor histidine kinase [Lactobacillus antri DSM 16041] Length = 489 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 18/236 (7%), Positives = 63/236 (26%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50 M + + + S + H++ +P+ I LE+L G +D + Sbjct: 250 MLDRMQRYIDQQ---SQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPQVLDDSLAASLV 306 Query: 51 --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + ++ + + ++ + + + + + + ++ Sbjct: 307 ETKRMKNLVQEMLDLSRAEQVEINFRDQRTVVNDVVHQVFNNFKMLYPEFTFTLDDDVDE 366 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L+ L A ++ +++ + ++ G + Sbjct: 367 KIVANIYRDHLEQVLVILCDNAVKYSGERKEIHLTLSRGMSTVEIGVQDFGEGIAPADA- 425 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + L + E + +L Sbjct: 426 QRVFDRFYRVDKARSRKKGGNGLGLSIAQRLIEGYHGSISLESSLGAGSLFKVVLP 481 >gi|228902515|ref|ZP_04066667.1| hypothetical protein bthur0014_36900 [Bacillus thuringiensis IBL 4222] gi|228857105|gb|EEN01613.1| hypothetical protein bthur0014_36900 [Bacillus thuringiensis IBL 4222] Length = 424 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|228909837|ref|ZP_04073658.1| hypothetical protein bthur0013_39870 [Bacillus thuringiensis IBL 200] gi|228849672|gb|EEM94505.1| hypothetical protein bthur0013_39870 [Bacillus thuringiensis IBL 200] Length = 424 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|228922759|ref|ZP_04086057.1| hypothetical protein bthur0011_37440 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836814|gb|EEM82157.1| hypothetical protein bthur0011_37440 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 424 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|228941170|ref|ZP_04103724.1| hypothetical protein bthur0008_38100 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974103|ref|ZP_04134674.1| hypothetical protein bthur0003_38570 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980694|ref|ZP_04141000.1| hypothetical protein bthur0002_38600 [Bacillus thuringiensis Bt407] gi|228779033|gb|EEM27294.1| hypothetical protein bthur0002_38600 [Bacillus thuringiensis Bt407] gi|228785614|gb|EEM33622.1| hypothetical protein bthur0003_38570 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818500|gb|EEM64571.1| hypothetical protein bthur0008_38100 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941780|gb|AEA17676.1| sporulation kinase B [Bacillus thuringiensis serovar chinensis CT-43] Length = 424 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|228989444|ref|ZP_04149431.1| hypothetical protein bpmyx0001_2180 [Bacillus pseudomycoides DSM 12442] gi|228770292|gb|EEM18869.1| hypothetical protein bpmyx0001_2180 [Bacillus pseudomycoides DSM 12442] Length = 286 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 67/237 (28%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S L S I HDI +P+ +I ++ L + E+E ++ + + S Sbjct: 39 LEKVQVEAKRSQKARKQLLSSISHDIRTPLTSIIGYIDALKDGIAASEEEKLEYLEIISN 98 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 A + + F + L + + + Sbjct: 99 KANSLKQLVDEIFNMAKLDADEFPLKEEQLDFSEITRESLIEFLPELSKHSIELQINIPE 158 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 S +++ NL A G V I + ++ N+ + G + Sbjct: 159 EPCIITADSFSLIRVISNLLKNAIHYGHSGKIVGIELLETTNDYQLLIWDKGPGISTDDL 218 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + + L +N ++ E I + K Sbjct: 219 ENVFERMYQIDQSRNPSHGGSGLGLAIAKALVEKNGGQIWVESIPWKKTTFGFSIPK 275 >gi|229192217|ref|ZP_04319182.1| hypothetical protein bcere0002_38700 [Bacillus cereus ATCC 10876] gi|228591167|gb|EEK49021.1| hypothetical protein bcere0002_38700 [Bacillus cereus ATCC 10876] Length = 424 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMSLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|206971173|ref|ZP_03232124.1| sporulation kinase B [Bacillus cereus AH1134] gi|218235962|ref|YP_002368809.1| sporulation kinase B [Bacillus cereus B4264] gi|218899165|ref|YP_002447576.1| sporulation kinase B [Bacillus cereus G9842] gi|228954283|ref|ZP_04116310.1| hypothetical protein bthur0006_36540 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071509|ref|ZP_04204728.1| hypothetical protein bcere0025_36790 [Bacillus cereus F65185] gi|229081262|ref|ZP_04213766.1| hypothetical protein bcere0023_38970 [Bacillus cereus Rock4-2] gi|229111481|ref|ZP_04241032.1| hypothetical protein bcere0018_37260 [Bacillus cereus Rock1-15] gi|229152207|ref|ZP_04280400.1| hypothetical protein bcere0011_37460 [Bacillus cereus m1550] gi|229180283|ref|ZP_04307626.1| hypothetical protein bcere0005_36280 [Bacillus cereus 172560W] gi|206733945|gb|EDZ51116.1| sporulation kinase B [Bacillus cereus AH1134] gi|218163919|gb|ACK63911.1| sporulation kinase B [Bacillus cereus B4264] gi|218545396|gb|ACK97790.1| sporulation kinase B [Bacillus cereus G9842] gi|228603030|gb|EEK60508.1| hypothetical protein bcere0005_36280 [Bacillus cereus 172560W] gi|228631169|gb|EEK87805.1| hypothetical protein bcere0011_37460 [Bacillus cereus m1550] gi|228671863|gb|EEL27156.1| hypothetical protein bcere0018_37260 [Bacillus cereus Rock1-15] gi|228702029|gb|EEL54511.1| hypothetical protein bcere0023_38970 [Bacillus cereus Rock4-2] gi|228711596|gb|EEL63552.1| hypothetical protein bcere0025_36790 [Bacillus cereus F65185] gi|228805411|gb|EEM52003.1| hypothetical protein bthur0006_36540 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 424 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|154498428|ref|ZP_02036806.1| hypothetical protein BACCAP_02417 [Bacteroides capillosus ATCC 29799] gi|150272496|gb|EDM99681.1| hypothetical protein BACCAP_02417 [Bacteroides capillosus ATCC 29799] Length = 497 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 58/237 (24%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLV--ALL--CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL- 55 +A+ I L ++ + + S H++ +PI I +L+ G +D + + Sbjct: 241 LAEAINAMLDRINEAYRSQMRFVSDASHELRTPIAVIQGYANMLNRWGKDDPETRQEAID 300 Query: 56 --------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-----EQVIEDFIAVDKRVQV 102 L R L + + + Sbjct: 301 AISAEAASMKELVEQLLFLARGDNESMHVEFEDFDLTAMAAEVLRETEMIDQTHQFSARW 360 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 + + L + P GG + + V+ +++ G Sbjct: 361 EENVTVHADVGLIKQAMRILVDNSIKYTPAGGCIRLGVEKRNGTARLTVQDEGQGIDAAS 420 Query: 161 -PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + + + + ++ +L Sbjct: 421 LPHIFERFYRTDQSRARQTGGTGLGLAIAKWIVDRHGGWFEVTSREGIGTRMTVVLP 477 >gi|149173454|ref|ZP_01852084.1| sensor histidine kinase [Planctomyces maris DSM 8797] gi|148847636|gb|EDL61969.1| sensor histidine kinase [Planctomyces maris DSM 8797] Length = 480 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 69/227 (30%), Gaps = 15/227 (6%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55 + ++ + A LL + I H++ +P+ I + ++LL+ ++ + + Sbjct: 231 LQESQALLVQQEKHAAFGLLAAGIAHEVGNPLAGISSLVQLLNRHNNDEYTNKRLDEVDA 290 Query: 56 SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107 + F R A + + + + + + + Sbjct: 291 QLRRIQRILRELIDFSRPATTERNRCQINELITESLNISKYYKRKKGKNIITRFAEDLPV 350 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++ LNL + A + G + I+ + + + S+ +G E ++ Sbjct: 351 VQVVRDQLVQVFLNLILNAMDATEEGESIEITTEARGGQIVISIHDDGEGI-REEDKARL 409 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENK-IRLLPEIIDDHNVVLSALL 213 + + + + + + + L Sbjct: 410 FQPYFTTKAKGTGLGLFVCKNILEHSNSGTIEIDDTVKDGARFIVSL 456 >gi|152995279|ref|YP_001340114.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836203|gb|ABR70179.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 936 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 54/236 (22%), Gaps = 29/236 (12%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------------- 50 + S L + + I H++ +P+ AI + L + + + Sbjct: 289 REAMESNRLKSQFLANISHEVRTPLNAILGYTKTLQKDITDTQQRLYVDTIEQSTNSLLT 348 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ S + A T D L E I + Sbjct: 349 IIGDILDFSKIEAGKLNLESNHFNLKTLLDDVYQILSINLLTKEKQIDLVPEFSQDVPEW 408 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEK 163 + S +IL NL A +G T + F + G + Sbjct: 409 FVGDSTRVRQILTNLIGNAIKFTHQGSVRTKVSIASQTPQEITLSFQIIDTGIGIAEHKI 468 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + L + ++ + Sbjct: 469 N-RLFKPFSQVDTSTTRQFGGTGLGLVITKKLVEQMNGKIEVSSDPSIGSTFRFTI 523 >gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 740 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 31/244 (12%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50 + L VA + + + H++ +P+ +I +LL E + ++ + Sbjct: 470 ERKEAEKLLQEKQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIYGDLNEKQL 529 Query: 51 QLIRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + S S L + L + L + ++ I D + Sbjct: 530 KAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLSPIADRKMI 589 Query: 97 DKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + ++QV + A+I+ NL A G V I + + ++K G Sbjct: 590 EVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKRKGDTVEITVKDYG 649 Query: 156 NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + ++ + + V + + + + + Sbjct: 650 IGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNSRIGEGSTFA 709 Query: 211 ALLE 214 + Sbjct: 710 FTIP 713 >gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701] gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701] Length = 549 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 56/245 (22%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMD-LVA-----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 A+ + L+ + L A S I H+I +P+ A+ +LL + ++ + +L+ Sbjct: 135 ARTLELQLARDEALAATGAMGQFLSTISHEIRTPLNAVIGMSDLLLDTSLDGQQQELVHT 194 Query: 56 SSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + SA + + S+ V + + Sbjct: 195 INSSAELLLRLINDILDLSKIEARKMKISSETFSLRSLVLDCCRMMDAAVRAKRLELRCS 254 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKING 155 I +I+LNL A G E + G Sbjct: 255 FSDDPPDALIGDGLRIRQIVLNLLNNAIKFTSHGSVDVKIGWRPLTSSAIELDLVVADTG 314 Query: 156 NLARFPEKFTQI------VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + S + L + Sbjct: 315 TGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRLMGGSIEAVSQLGQGSRF 374 Query: 210 SALLE 214 L Sbjct: 375 HVRLP 379 >gi|75760903|ref|ZP_00740914.1| Sporulation kinase B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491607|gb|EAO54812.1| Sporulation kinase B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 409 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 181 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 240 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 241 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 300 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ I +K +G E+ ++ Sbjct: 301 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 359 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 360 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 403 >gi|333010340|gb|EGK29773.1| HAMP domain protein [Shigella flexneri VA-6] Length = 679 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 74/232 (31%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 L S L A+ L + HD + + I SLEL++ + +Q + ++ Sbjct: 386 EEALLHSQKLKAVRQLTGGLAHDFNNLLAVIIGSLELVNTNSPDAPRIQRAQQAAERGAL 445 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLTIEIEAQSPAWSAWIDVSQL 505 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|332704445|ref|ZP_08424533.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554594|gb|EGJ51638.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 499 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 + ++ S L + L + + H I +P+ ++ L L + E ++I Sbjct: 258 LRESREVLAQSEKLAVVGKLAAGVAHSIRNPLTSVKMRLYTLQRTLHLDDAQKEDFEVIS 317 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109 ++ V + L D+ + + V V G Sbjct: 318 EEVGQIDGIVRSFLEFARPPKLVVRPVSLSDVVDSTLALLRHKLESYHVDVLVEREGPLP 377 Query: 110 DLSRERAKILLNLFM---VAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ + ++ L A ++ + + + + G Sbjct: 378 EVMADPEQVKEVLVNLVLNACEAMGVGGTITIAEEEGHIAPQGRVTLLRISDTGPGVPET 437 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E+ L + Sbjct: 438 -VRARIFEPFFTTKEEGSGLGLAIAARIMTEHGGWLHLASGQGRGATFVVGMP 489 >gi|270263750|ref|ZP_06192019.1| hypothetical protein SOD_e03800 [Serratia odorifera 4Rx13] gi|270042634|gb|EFA15729.1| hypothetical protein SOD_e03800 [Serratia odorifera 4Rx13] Length = 897 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52 A+ + L L + + HD+ +P+ + E+L ++ Q Sbjct: 653 AEEAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSSHAPQASQIRQQ 712 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKI 109 + ++ L R+ G L +I + +++V E + Sbjct: 713 VLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGASLHMLEPLLTQHQIKVELPPELV 772 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++ + ++ NL A+ + I + NG + Sbjct: 773 LVNCDGSLLERVFTNLLENANKYAGIDAIIGIRAHTLPEWLEVEVWDNGPGIPEGKKQLI 832 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 833 FDKFARGNKESAIPGVGLGLAICRAIIEVHGGRIWAENGANGGASFRFVLP 883 >gi|237653851|ref|YP_002890165.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|237625098|gb|ACR01788.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 902 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 60/237 (25%), Gaps = 25/237 (10%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSL---------------ELLDEV 43 A+ L L+ + + S + H++ P+ AI N ++L + Sbjct: 655 AREQEERLQRTSRLITMGEMASTLAHELNQPLAAIANYCAGSVTRLQSGKARTEDVLAAM 714 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + +K V+ L + + ++ Sbjct: 715 QKASFQAERAGKIIRRVREFVKKSEPQRCAVDLVEVLEDAIGFADIDAHRTRIRIHTELE 774 Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNL 157 ++LLNL ++ + ++ G+ Sbjct: 775 PGLPPVYADRIMIEQVLLNLIRNGLDAMADALPEARVLTVRVRTVGADAVEVAVIDRGHG 834 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E Q+ + + + + + RLL + + + + L Sbjct: 835 I-SEEGRAQLFTPFYTTKAEGMGMGLNICRSIVEFHNGRLLVDANPEGGTIFTFTLP 890 >gi|297200794|ref|ZP_06918191.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|197712365|gb|EDY56399.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 551 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 26/232 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56 + + + H++ +P+ +I EL + I Sbjct: 294 RQQSEMRVRQ------FVADASHELRTPLASIRGYAELTRRGREEIGPDTRHALGRIESE 347 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113 + + ++ + L D+ ++ D I+ + + Sbjct: 348 AGRMTLLVEDLLLLARLDAGRPLQFEQTDLIPLVVDTISDARAAGMDHNWRLDLPDEPAL 407 Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164 ++L+NL A P G VT VQ ++ NG P F Sbjct: 408 VSGDAARLQQVLINLLGNARKHTPPGTTVTARVQRRGPWMCVDVEDNGQGIPSDLLPHVF 467 Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ S + V +A + + + + V + L Sbjct: 468 ERFARGDSARSRATGSTGLGLAIVQAVATAHGGAVTVDSVPGR-TVFTMHLP 518 >gi|329765439|ref|ZP_08257018.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138080|gb|EGG42337.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 441 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 81/227 (35%), Gaps = 16/227 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQL 52 + + + S A+ L SR+ HD+ +P+ I +++LL + I E ++L Sbjct: 215 LDQKTKQLIQSERFSAIGELSSRLAHDLRNPLAVIKATIDLLKQKSIAQSDTYTTERLEL 274 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + S ++ + T L I Q I + V + I Sbjct: 275 VSDSIFRMTHQIDGVLDYVRKTPITKETHSLRKIIQNSLIPIKIPANVTIILPENDIMYK 334 Query: 113 RERAK---ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + K + NLF+ + ++ G++ I + ++ N I ++ +G ++ QI Sbjct: 335 CDSIKMDIVFGNLFLNSIQAIGKEQGQIIIKIGETANSVIMEIQDSGKGV-ENDQVEQIF 393 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V + ++K + + K Sbjct: 394 EPLFTTKQEGTGLGLSSVKSIVEQHKGTITFRNNP---STFTMTFPK 437 >gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] Length = 816 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 65/238 (27%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A S + +++ H+I +P+ + +LL + ++ + Q + + S Sbjct: 406 LAAREAQTESRAK--SQFLAQMSHEIRTPMNGVIGMADLLRQTKLDVQQKQYLDIIVNSG 463 Query: 61 IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIE-DFIAVDKRVQVSW---- 104 L + ++ +D + + Q+ ++ W Sbjct: 464 RTLLTIINDILDFSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAIYLKKDWKEGA 523 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP 161 + S ++L NL A +V ++DS+ ++ G Sbjct: 524 SPIIYGDSTRLRQVLTNLLSNALKFTEKGGITLRVKPCLRDSEPYLQVEVEDTGIGISV- 582 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E ++ + L + + + L Sbjct: 583 ENQQRLFSAFSQAEASTTRRFGGTGLGLAISKQLVELMGGEIGVRSEEGVGSIFWFTL 640 >gi|224543643|ref|ZP_03684182.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM 15897] gi|224523416|gb|EEF92521.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM 15897] Length = 529 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 20/224 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-SMSAIIRLKFMRL 69 S + S + H++ +PI AI ELL + I DE + + LS + + + + Sbjct: 303 SQKMREEFFSSVSHELKTPITAIRGYSELLSQGFINDENQKKMMLSKIQTEVTNMSSLIN 362 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVD-----------KRVQVSWTGEKIDLSRERAKI 118 +DS + + V + D V++ + I ++I Sbjct: 363 DILMLSRLDSDDLIVEKVPVKMQALMKDISQDYEGLLLKYNVELHTDVDPITYIGNGSQI 422 Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172 + A G V + + ++ +K G + F + + Sbjct: 423 ETLISNLVSNAIKYNKEDGHVYVHIYSKEDNMFIEVKDTGIGIPLADQGRVFERFYRVDK 482 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + NK + ++ L Sbjct: 483 GRSRIKGGTGLGLAIVKHIVSYNKGTVKLHSQLGEGTCITITLP 526 >gi|170748607|ref|YP_001754867.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655129|gb|ACB24184.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 628 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 27/239 (11%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 + + L S + AL L I HD + + AI SLEL + +++ R Sbjct: 250 QRTLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELAGPKVADQPRVQRLIENAR 309 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 ++ L F R VD + + + + V+ Sbjct: 310 GAAERGASLTKRLLSFSRAHDLQARPVDVNTLITGMSDLFGRSLGGLVTVRTDLEDGLPA 369 Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157 + + ++ L + + + R S+ G Sbjct: 370 VQVDPDQLELAVLNLCINARDAMPDGGAITVATRRLAISGDPEIADGPYLGISVTDEGTG 429 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + V LA ++K RL+ + + + L Sbjct: 430 I-PEEILRRVCEPFFTTKAVGQGTGLGLAMVFGLAQQSKGRLVIDSVVGRGTRVELALP 487 >gi|218781735|ref|YP_002433053.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763119|gb|ACL05585.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 729 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 56/243 (23%), Gaps = 30/243 (12%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 K++ L M+ + L I HD + + +I EL + + Sbjct: 339 RKDLEERLKHSQRMESIGTLAGGIAHDFNNILNSIIGFTELALDDAKPGAQQEECLQEVL 398 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108 +S L F R V + Q++ + ++ + Sbjct: 399 KAGTRASGLVKQILTFARRGSEEPKPVRVSSITKETLQLLRSTVPPSIKIKQNIQSESLV 458 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLK 152 + + ++LLNL A ++ G ++ Sbjct: 459 MADPTQIHQVLLNLCTNAVQAMEEKGGLLQVDLADVLVDAELASRTPNLHPGEYLKIGIR 518 Query: 153 INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + + V + +L + Sbjct: 519 DTGYGIPADAIQSIFEPYFTTKGFGKGTGLGLAVVHGIVQNCGGEILASSKVGGGSEFTI 578 Query: 212 LLE 214 L Sbjct: 579 YLP 581 >gi|154500841|ref|ZP_02038879.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC 29799] gi|150270341|gb|EDM97667.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC 29799] Length = 881 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------------EVGI 45 + + L A L I HD+ +P+ +I + L ++ Sbjct: 640 KEAAAVLAKNEQLRANLLRSISHDLRTPLTSISGNASNLLSNGALFDTKTKEQMYTDIYD 699 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +S + T VD ++ + Sbjct: 700 DAMWLINLVENLLSVSRLEEGKMNLHMSTELVDEVVAEALRHINRKSVEYRLNVQNSEDY 759 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++ ++L+N+ A P G ++ I + S+ NG K Sbjct: 760 VLAQIDAKLIIQVLINIVDNAIKYTPPGSQIDIGWKRQGRFIYISIGDNGPGIPDQAKPH 819 Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 S S + + + + + H + + Sbjct: 820 IFDMFYSASNRIADSRRSMGLGLALCKSIVNAHGGEITVADNVPHGSIFTF 870 >gi|91200167|emb|CAJ73211.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 569 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 66/228 (28%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSS 57 + + S L + + I H+I +P+ I + +++ ++ + Sbjct: 340 LKDAQERLVRSEKLAVIGNMAGYIAHEIRNPLVTIGGFARSIARETADNKTIKNSAEIII 399 Query: 58 MSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 K + + ++ + + D + + + + V E + Sbjct: 400 DEVSRLEKILAVVMDFSKVAKPAKVKTQVNEIVDNTISLMESYFKNIGIDVVKKYESMIP 459 Query: 112 -----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ LN+F A S+ GGK+ + + G + Sbjct: 460 DIVVDQDQIRQVFLNIFKNAAESMQNGGKLIVGTTKEDEYVRIDITDTGVGM-DADTIEN 518 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + I + +++ + + + S L Sbjct: 519 IFTPFYTKKREGTGIGLAVSQKIVDDHEGFIKVKSELNQGATFSIFLP 566 >gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1364 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I +++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVITLEK 872 >gi|13471100|ref|NP_102669.1| two component sensor-kinase [Mesorhizobium loti MAFF303099] gi|14021844|dbj|BAB48455.1| two component sensor-kinase [Mesorhizobium loti MAFF303099] Length = 993 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 30/240 (12%) Query: 2 AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDE 48 +S +L A L + I H++ P+ A+ + L+ E Sbjct: 750 RAEEALRRASEELARAMNAASLAELSASIAHEVNQPLAAVVANSNACERWLMAEPPNVQR 809 Query: 49 VMQLIRLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +++ K A T + + V Sbjct: 810 AQKIVGRIIRDANSAADVVSRIRALFKQSLDARLDTTLGGVVDQARTLMAEEAARSRVPI 869 Query: 99 RVQVSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKIN 154 + V I + ++L+NL ++ G + V + + Sbjct: 870 NIDVERDLPVIALDRVQIQQVLVNLMRNGIEAMDGVGDPKSLAVRVHRVGDAIQTEVSDW 929 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G E+ ++ + + + + + RL E + L Sbjct: 930 GPGV---EQLDRMFEPFFTTKEQGMGMGLAISRSIVESHGGRLWVEKNEPRGATFIFTLP 986 >gi|323496999|ref|ZP_08102022.1| nitrogen regulation protein NR(II) [Vibrio sinaloensis DSM 21326] gi|323317843|gb|EGA70831.1| nitrogen regulation protein NR(II) [Vibrio sinaloensis DSM 21326] Length = 348 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 70/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+ + + + + ++ A Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 175 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + + L + Q++E I ++ + + + Sbjct: 176 DRLRSLVDRLLGPQKPGKKQHENLHLILEKVRQLVELEIGQRVVIERDYDPSLPEFLMDA 235 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I L + + + I Q K + NG Sbjct: 236 DQIEQALLNIVSNAGQILQQQNNGKITIRTRTVHQANIHGQRCKLAARVEIIDNGPGI-P 294 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + L +++ ++ E + + L Sbjct: 295 ADLQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIDVESWPGR-TIFTIYLP 347 >gi|311281365|ref|YP_003943596.1| integral membrane sensor hybrid histidine kinase [Enterobacter cloacae SCF1] gi|308750560|gb|ADO50312.1| integral membrane sensor hybrid histidine kinase [Enterobacter cloacae SCF1] Length = 760 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 23/236 (9%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 + + L M V L + HD + + I SLEL+ + +Q Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVTPDGADSPRISRALQAAE 446 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 ++ L F R + +V+ L ++ +++ + +++ + Sbjct: 447 RGALLTQRLLAFSRKQSLHPRAVEMKTLLENLGELMRHSLPATISLEIEAQSPAWPAWID 506 Query: 115 RAKI---LLNLFMVAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ ++N+ M A ++ +VT S + + +G Sbjct: 507 VGQLENAMINMVMNARDAMEGQAGVIRIRTWNQRVTRSDSRRHDMVALEVIDHGCGM-SQ 565 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 566 AVKAQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLHLPR 621 >gi|302038857|ref|YP_003799179.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606921|emb|CBK43254.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1033 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 19/246 (7%), Positives = 66/246 (26%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + S + A+ L + HD + + I EL L + ++ ++ Sbjct: 644 LRRTEAQLQQSQKMEAVGRLAGGVAHDFNNMLTVIRGYSELVLSRLAPTDGFRKELEEVK 703 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106 ++ A + ++ L + +E + + Sbjct: 704 KAADRASGLTGQLLAFSRRQFIAPKVLDLNSVIHNMEGMLRRLLGEDIVELCTVLDPGLG 763 Query: 107 EKIDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSL 151 + + ++++NL + A ++P + + + + Sbjct: 764 QLKADPGQVEQVIMNLAVNARDAMPNGGRLTVETSNVQFGQRRNRPPMGAEPGSYVALIV 823 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + G+ + + + + + + V + ++ + E Sbjct: 824 RDTGHGM-DEDTQSHVFEPFFTTKEKGKGTGLGLSTVYGIVKQSGGCIEVESKPGRGATF 882 Query: 210 SALLEK 215 + Sbjct: 883 KIYFPR 888 >gi|293376179|ref|ZP_06622424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] gi|292645166|gb|EFF63231.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] Length = 623 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 63/220 (28%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 +++ H++ +P+ AI ++LL + ++ I + S+ + LK + ++ D Sbjct: 394 AKVSHELKTPLNAIKGYIQLLKLSIDNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIEDG 453 Query: 80 LIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLNLF 123 + L + V + + + +I++NL Sbjct: 454 KVKLEIDTIDLFHTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIINLM 513 Query: 124 MVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174 A +++ +K G + + + ++ Sbjct: 514 SNALKFTEHGKIEVSFDLDYQTENEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSISR 573 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L+ E + + L Sbjct: 574 QFGGTGLGLSISKRLAEVMGGNLIVESKVNVGSTFTLFLP 613 >gi|262165686|ref|ZP_06033423.1| signal transduction histidine kinase [Vibrio mimicus VM223] gi|262025402|gb|EEY44070.1| signal transduction histidine kinase [Vibrio mimicus VM223] Length = 573 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 68/246 (27%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNS------------L 37 + + + + L L + + H++ +P+ A+ + Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGDSTSYQV 244 Query: 38 ELLDEVGIEDEVMQLIRLSSMSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 ELL+++ E++ +I + + + + + + + Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + + E S +IL N+ A + G+V I + ++ ++ Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKQ-GRVDIQLNYIEDGIDIQVQDT 363 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G Q+ + + L + + D + Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGAINVDSKIDIGTL 422 Query: 209 LSALLE 214 + + Sbjct: 423 FTLRIP 428 >gi|254422278|ref|ZP_05035996.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196189767|gb|EDX84731.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 606 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 64/234 (27%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55 A+ + + +L AL L S H++ +P+ +I S ++L+ + + + IR Sbjct: 370 AQTQSALIKTQELSALKIRLFSMASHELRTPLASILLSAQVLETDLDRTERPRIYRRIRA 429 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------- 108 ++ L + + I + R Sbjct: 430 AAKRMNQLLGDLLTLARAESGKLEFSPETLNLSLFCKQIIDEVRCSFDVPPTVNFIVSST 489 Query: 109 -----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 + +L NL A +V++SV + +F + G + Sbjct: 490 VPTAAYFDPQLLRAVLTNLLSNAVKYSKELPQVSLSVTCQLHNLVFQVSDRGIGIHKADQ 549 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G I + V + LL E + L Sbjct: 550 ARLNEAFYRGKNVGHIQGTGLGLSVVSACLQLHHGTLLCESALGEGTTFTVTLP 603 >gi|193215882|ref|YP_001997081.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089359|gb|ACF14634.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1791 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 73/251 (29%), Gaps = 38/251 (15%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + L + + A+ L + HD + + A+ + E+L++ +E + Sbjct: 1539 RRELEEQLRQAQKMEAVGRLTGGVAHDFNNLLTAVLGNAEILEKKLTGNEFVLKNIERIK 1598 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 S L F R G++ V + ++ ++E I V S E + Sbjct: 1599 ASATRGSELTRKLLTFSRQKKGFSKPVQINKCIENVIGLMEHTIDKRIDVLTSLCSENLV 1658 Query: 111 LSRERAKILLNLFMVAHASLPRGGK------------------------VTISVQDSKNE 146 + + ++ + L +A + ++ +++ Sbjct: 1659 VMGDENQLEMVLLNLAVNASDAMSPVLDMKKEGKLCFETRIEKISKTFAEQHQLELAQSY 1718 Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD 204 S+ G E +I + + + ++ +L E Sbjct: 1719 VRISVSDTGTGI-PDEIRQKIFEPFFTTKDIESGTGLGLAITYGAVKSHRGAILLESEVG 1777 Query: 205 HNVVLSALLEK 215 L + Sbjct: 1778 VGSTFHIYLPR 1788 >gi|332702027|ref|ZP_08422115.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552176|gb|EGJ49220.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 604 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 51/221 (23%), Gaps = 24/221 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKFMRLAFGY 73 + + H++ +P+ +I E L + +I ++ L + Sbjct: 373 FVANVSHELRTPLTSIKGYAETLQSDPAASPQAKGFLDIIVKNANHMTKILGDLLNLSRL 432 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVSWTGEKIDLSRERAKILLN 121 + Q + + ++ N Sbjct: 433 EADRQAFELAPVDAQAAVMSAYRECESLGRGRGVGLVCRIPEKAVFVLADYDRLVQVFRN 492 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES-TID 177 L A P G VT+ Q E +F + G E F + + Sbjct: 493 LIENALRYSPEHGSVTVFHQTGDGEVLFGVSDRGPGIPRDEQAKIFERFYRVEKHRLKMG 552 Query: 178 S-HDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214 + + + R+ +D + Sbjct: 553 GSSGLGLAIAKHIVERHGGRIWVVSPATGEDTGATFYFNMP 593 >gi|331086633|ref|ZP_08335710.1| hypothetical protein HMPREF0987_02013 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409799|gb|EGG89234.1| hypothetical protein HMPREF0987_02013 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 276 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 23/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDE 48 K N+ S + S I H + +P+ I ELL E + Sbjct: 51 TKAERENIQS------MISDISHQMKTPLANIMLYSELLQEQTEGEQEKYLAEQIETYAK 104 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSV-DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 ++ + ++ + + V L + + + G+ Sbjct: 105 KLEFLTMALVKMSRLESDVFKICPSVQRVGSLLRQATEEILPRARQKEIQIEICGDIEGK 164 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-- 165 + + L N+ A P+G ++ + + ++K G R E+ Sbjct: 165 ANFDQKWTQEALYNILDNAVKYSPKGSRIEVEGISYEMYFCIAVKDQGIGIREEERAQIF 224 Query: 166 -QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + I Y + + E + + + L+K Sbjct: 225 SRFYRSDLVQQEEGIGIGLYLAREIVQREGGYIKVESKEGNGSIFKIFLQK 275 >gi|313905593|ref|ZP_07838955.1| integral membrane sensor signal transduction histidine kinase [Eubacterium cellulosolvens 6] gi|313469540|gb|EFR64880.1| integral membrane sensor signal transduction histidine kinase [Eubacterium cellulosolvens 6] Length = 446 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 25/238 (10%) Query: 3 KNICFNLSSMDL--VALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +N ++ AL+ + + H++ +P+ AI ELL+ +++E ++ Sbjct: 209 QNEQLKQDQKEIEKAALIRQEFTANVSHELKTPLHAISGYAELLENEMVKEEDIKPFASK 268 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------ 104 R+ + +D+ E IA + + Sbjct: 269 IRGESSRMTKLVEDIIDLTRLDNGGDEMKWEDCDLYRIAENAVDSLEVAATALGVEVTVD 328 Query: 105 --TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 + + I+ NL A GG V + VQ + + S+K G Sbjct: 329 GSDATTRAIPQLIYSIVYNLCDNAIKYNHSGGSVQVRVQQTSYNIVLSVKDTGIGIPEES 388 Query: 160 FPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + + V + ++ + + + K Sbjct: 389 RERIFERFYRVDKSRSKEVGGTGLGLSIVKHAVIIHNGKIEVKSKLGEGTEMIVTIPK 446 >gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] Length = 1012 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 25/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58 AK + + S++ H++ +P+ +I ++L+E + ++ + IR Sbjct: 635 AKEEAEKANQAK--SEFLSKVSHELRTPLNSILGYAQILEEQGEKDLTEKQLNRIRKILK 692 Query: 59 SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + L V + D ++++ + + Sbjct: 693 AGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHA 752 Query: 108 KIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ +ILLNL A P +TI +++ S++ G E Sbjct: 753 YQEVFIEVDELRFQQILLNLLTNAIKYSPAYRDITIYTDITQHHVTISIEDKGFGIPASE 812 Query: 163 KFTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + D I V L + Sbjct: 813 LN-RIFEPFYRVNRLEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFP 866 >gi|283852156|ref|ZP_06369429.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572382|gb|EFC20369.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 550 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 67/231 (29%), Gaps = 27/231 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------------VGIEDEVMQ 51 S + AL L + + H++ +P+ I + + ++ Sbjct: 318 QSSKMAALGKLAAGVAHEVNNPLAIIMEKAGWMRDLLGEEDIKASPNFQEFEDAVAKIEF 377 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKID 110 +R + L F R +D + L + + + + Sbjct: 378 HVRRAKDVTHRLLGFARRMEPTQEDIDVNLLLDQTRSFLENEASFRGITFLSDYQKDLPR 437 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165 ++ + ++ LN+ A ++ + G +T++ + + E + G E Sbjct: 438 IASDTSQLQQVFLNIMDNAIDAIDKNGSITVTTRAAPDVPEVEIVIADTGKGM-SKEAMA 496 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + R+ + L Sbjct: 497 KIFDPFFTTKKVGEGTGLGLTISYSIIKKLGGRIEVTSEEGRGTAFHITLP 547 >gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] Length = 1014 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 630 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750 Query: 208 VLSALLE 214 ++ L Sbjct: 751 TVTVALP 757 >gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis] Length = 2362 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 62/246 (25%), Gaps = 33/246 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53 +N+ + ++ + + H++ +P+ + + ELL + + + +++ Sbjct: 1927 KRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDLNKDQLEMADSIRVSAD 1986 Query: 54 ----------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S M A ++ + + + + V ++ Sbjct: 1987 LLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKNVKIVQNIN 2046 Query: 104 WTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLA 158 ++L NL + G F ++ G Sbjct: 2047 LPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHATLTFWVRDTGIGI 2106 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--L 209 + ++ + L K ++ E ++ Sbjct: 2107 PPQQL-AKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEENVGTTAWF 2165 Query: 210 SALLEK 215 + EK Sbjct: 2166 TVTFEK 2171 >gi|71735973|ref|YP_275436.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556526|gb|AAZ35737.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 697 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +A+ S + A+ L I HD + + I SLELL + ++ R Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ L F R VD + +E++I + ++V + Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSAGL 427 Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151 + ++ LNL + A ++PR + Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE + D + + V ++ ++ + + Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546 Query: 210 SALLEK 215 L + Sbjct: 547 CLYLPR 552 >gi|148264822|ref|YP_001231528.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146398322|gb|ABQ26955.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 897 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 69/244 (28%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + K L + + ++ L + HD + + I +LL + +++ Sbjct: 513 LRKTEAQLLHAQKMESIGTLAGGVAHDFNNLLTVIGGYADLLRLSLKGDERRVAFALEIS 572 Query: 54 RLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGE 107 L F D + + ++++ I + D + Sbjct: 573 NSVKRGAELTRSLLAFSGKHEPQKRYDDLNLIVANLQKSISRLLRSDITLTFGLCDDRLS 632 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---------------SVQDSKNENIFSLK 152 + ++L+NL + A +L GG++ + + + ++ Sbjct: 633 VFAERVQIEQVLINLMVNARDALTSGGRIHVATALVEVREAVVTGGVTVPPGSYGLVTVM 692 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 NG E +I + + + + + R+ E + Sbjct: 693 DNGVGM-DKETVGRIFEPFFTTKETGKGTGLGLSIAFGIVGNHNGRITVESAPGKGAMFR 751 Query: 211 ALLE 214 L Sbjct: 752 VYLP 755 >gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1353 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 826 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883 Query: 63 RLKFMRLAFGYTG----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107 L + Y ++ L + D +A K++ + E Sbjct: 884 LLHLVNQLMDYRRAELGVFELKAKRENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKE 943 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ I+ NL A G +T+++++ N + + G K +I Sbjct: 944 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051 >gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] Length = 743 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 56/241 (23%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+N + L + + H+I +P+ + ELL E + +E + S Sbjct: 214 ARNKAEAANRAKSAFL--ANMSHEIRTPMNGVVGMAELLGETELNEEQQLYVETIRSSGE 271 Query: 62 IRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + Y+ + + ++ V + Sbjct: 272 ALLTIINDVLDYSKIEAERLKLYPEVFDLERCLHEIMVLLQPSAKDKGVKLLVDYDLFLP 331 Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFP 161 +IL NL A G V E +++ G Sbjct: 332 TRFIADPGRMRQILTNLLGNAVKFTHTGHVLARVVGFERDAEHYELHVTVEDTGIGISPD 391 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214 + N + + L H + + L Sbjct: 392 NLDHVFGEFNQVEATSNRRFEGTGLGLAITRQLVHLMGGSVWVDSQLGEGSCFGFRVTLP 451 Query: 215 K 215 + Sbjct: 452 R 452 >gi|291615283|ref|YP_003525440.1| multi-sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291585395|gb|ADE13053.1| multi-sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 450 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 19/211 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------------RLKFMRL 69 + HD+ +P+ I + + L + + + Sbjct: 229 VSHDLKAPLRGISSLADWLSTDYADKFDEDGKEQMRLLINRVHRMDGLIDGILLYSRVGR 288 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 +VD + ++ ++ + ++ + ++ NL A Sbjct: 289 VKETMTAVDIGRLVPEVIDLLAPPANIAVTIE-DPLPTVMAEPTRIQQLFQNLLSNAIKY 347 Query: 130 LPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVE----STIDSHDIQFY 184 + + + FS+ NG + F +I ++S + Sbjct: 348 MDKPEGRIRINCCAEGKQWKFSVSDNGPGI-KQQHFEKIFQLFQTLAPRDRVESSGVGLA 406 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L + Sbjct: 407 LVKKIVEMYGGTIWVESVVGEGSTFFFTLPR 437 >gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] Length = 1032 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 529 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 588 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 589 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 648 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 649 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 708 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 709 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 768 Query: 208 VLSALLE 214 ++ L Sbjct: 769 TVTVALP 775 >gi|228919208|ref|ZP_04082579.1| hypothetical protein bthur0011_2370 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840450|gb|EEM85720.1| hypothetical protein bthur0011_2370 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 314 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + K S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 72 LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + + + + Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREALIEFLPELSKHNIKLQVLIPE 191 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ + G + Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKNGKTIGVELLETDAAYELLIWDKGPGIPKHDL 251 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L N + + I + K Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVKSIPWERTTFGFSIPK 308 >gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1364 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I +++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVITLEK 872 >gi|95929173|ref|ZP_01311917.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95134671|gb|EAT16326.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 657 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 62/235 (26%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----------------I 45 + ++ +L A + HD+ +P+ AI ++L + Sbjct: 421 QRTEQLQRTNKELEAF-SYSVSHDLRAPLRAISGFSQILQDEYSENLSPEASRYLSLVVD 479 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++M + + + + ++ Q +++ Sbjct: 480 NSQMMGTLIDDLLRFSRLNRHELKKQMIDTEALVRQVVDELLQDCVYTFIHAPEIEIGSL 539 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE- 162 ++ +N+ A + I + F++ NG Sbjct: 540 ERCYGDPALIKQVFINVLSNALKFTQKTSYPHICITSTHQGEIVTFNISDNGAGFDMQYA 599 Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + +S + V + ++ + + + S LE+ Sbjct: 600 EKLFGVFQRLHHQSEFTGTGVGLAIVQRVIARHQGTIWAQAEPNKGATFSFTLER 654 >gi|318040258|ref|ZP_07972214.1| adaptive-response sensory kinase [Synechococcus sp. CB0101] Length = 381 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 69/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54 + + + + + L + H++ +P+ A +L+ L I++ +L Sbjct: 143 LRQENETLIERLRVQERLLRMVAHELRTPLTASKLALQSLKLGQIDETRFRDVLGRRLDD 202 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 + +S + + I ++ + ++ + + Sbjct: 203 IEQLSKDLLEVGTTRWEALFNPQRLALGPVAAEAILELEKLWVGRGLELLTDIPTDLPDV 262 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A P GG+V++++ + S+ +G E+ Sbjct: 263 YADQRRMRQVLLNLLENAFKYTPDGGQVSLTILHRTSQWLQISVCDSGPGIPRDEQERIF 322 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ S + + + R+ + Sbjct: 323 LERVRLPQTSSNTSGFGVGLSVCRRITEVHGGRIWVVSEPGEGACFHFTVP 373 >gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus Nitrospira defluvii] Length = 578 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 49/243 (20%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K L A S + H+I +P+ + ELL + D + Sbjct: 304 RKQQEERLCRAKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTELLLTTPLNDTQRRYA 363 Query: 54 RLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----D 97 S L + ++ L + + + Sbjct: 364 HTVHNSGTNLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHEQARKKGLALS 423 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKING 155 + +IL NL A G D + G Sbjct: 424 VTMTPDIPDMAHGDPHRLRQILTNLVGNALKFTETGTVAVFVRPDEGRPGRVRIEVTDTG 483 Query: 156 NLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + DG++ + V L +L Sbjct: 484 IGIPLQAQEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGLTSTPGQGTTFW 543 Query: 211 ALL 213 + Sbjct: 544 FTI 546 >gi|291541633|emb|CBL14743.1| Signal transduction histidine kinase [Ruminococcus bromii L2-63] Length = 347 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEKYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L K Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELPK 341 >gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 789 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 54/233 (23%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60 AK + + + + H++ +P+ AI ++L + ++ + + + S Sbjct: 315 AKEHADAANQAK--SDFLAHMSHELRTPLNAILGYAQILKLDTTLDQRQINGLTVIQRSG 372 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104 L + + L + +E + + Sbjct: 373 EHLLMLINDILDIAKIEAGRMELNLSDVSLEQLVHFIAESIRVKATEKGLAFACEMPPDL 432 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + LLNL A +G F ++ G Sbjct: 433 PAGVRVDEIRLRQALLNLLSNAIRFTEQGSVRLSVAFTPPTRLCFEVQDTGIGIDEGRLE 492 Query: 165 TQIVDG----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L + E D S +L Sbjct: 493 EIFRPFEQVSDERHRFGGTGLGLAISRQLVRLMGGEIHVESRRDIGSTFSIVL 545 >gi|163802260|ref|ZP_02196155.1| osmolarity sensor protein [Vibrio sp. AND4] gi|159174065|gb|EDP58875.1| osmolarity sensor protein [Vibrio sp. AND4] Length = 430 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 63/209 (30%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + ++ + + +++ Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAQGIISDTEECNEIISQFMDYLKP 279 Query: 70 AFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + VD + D+ + + + + NL + A Sbjct: 280 VNRESFERVDINTIISDVATSEGSYDIDIETELNPTKPVAKGSPIAIKRAVSNLVVNALR 339 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 K++ V K ++ NG + F G+ + + Sbjct: 340 YGNGRVKISTGVTADKQLVWVCVEDNGPGIEPSQVARLFEPFTRGDTARGSEGTGLGLAI 399 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + Sbjct: 400 VKRIVSQHSGSVVVRNRSQGGLSAQISFP 428 >gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] Length = 1014 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750 Query: 208 VLSALLE 214 ++ L Sbjct: 751 TVTVALP 757 >gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 705 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 23/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77 +R+ H+I +P+ + ELL + + + + S L + ++ Sbjct: 32 ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 91 Query: 78 ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123 + L D+ ++E + S +IL NL Sbjct: 92 KLTLERIDFNLHQLLDDVVALMEPNAQRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 151 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A G + +F + +G P+ Q+ + Sbjct: 152 GNAIKFTEHGHVALSAAYSDDGRIVFKIADSGIGI-APDVAAQLFRPFQQADSSTARKYG 210 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L + V + Sbjct: 211 GTGLGLVISRQLAEMMGGTLALDSTPGKGSVFTVTTP 247 >gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 1014 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%) Query: 1 MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52 + K L + A + + H+I +P+ AI +LELL + ++ + Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + L + + + L +I I + Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630 Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152 ++L NL A RG + + + Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690 Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 G R T D ++ + L + + + D Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750 Query: 208 VLSALLE 214 ++ L Sbjct: 751 TVTVALP 757 >gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Anabaena variabilis ATCC 29413] Length = 1399 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK---------- 65 S + H++ +P+ I LL E ++ ++ I S+ + + Sbjct: 1020 SILSHELRNPLNTILGWASLLSTHQLEADTVNQGLEAIERSAQAQAHLISDLLDVSRISS 1079 Query: 66 -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILLNLF 123 +R+ + + + ++ + + Q+ + +++ NL Sbjct: 1080 GRLRMDAQPIELIPIIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIWNLL 1139 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--GNVESTIDS 178 A P G++ I+++ + + G P F + G+ + Sbjct: 1140 SNAIKFTPVRGRIDITLEYTDFHAQIQISDTGQGISPDFLPFIFERFRQADGSRTRSNTG 1199 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V L + + + + + L Sbjct: 1200 LGLGLSIVRHLVELHGGTVAAQSPGEGLGATFTIRLP 1236 >gi|118580025|ref|YP_901275.1| histidine kinase [Pelobacter propionicus DSM 2379] gi|118502735|gb|ABK99217.1| histidine kinase [Pelobacter propionicus DSM 2379] Length = 400 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 68/240 (28%), Gaps = 28/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLI 53 + ++ + L + HD + + I + LL+ + Sbjct: 21 REENMSRSQKLECIGTLAGGVAHDFNNILTVIIGACTLLEMNAADYPDQMPFVSRIRNYA 80 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ L F R G + + D+ + + I D ++ + + + Sbjct: 81 ERAAQLTQDLLIFSRRQAVVMGPENLVEVFHDMHRFLGSIIGEDIQLITDQQEKTVMVMV 140 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTIS--------------VQDSKNENIFSLKINGN 156 + +I L + ++PRGG + + + + ++ G Sbjct: 141 DLGQIEQVLMNLAANSRDAMPRGGVLRMRLSRVTNDGALPHLEGCPLGDYALMTVSDTGT 200 Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + ++ + + + S L Sbjct: 201 GI-DRENLCRIYEPYFTTKELHAGAGLGLSVVYGIISQHNGAIHVQSSPGEGTLFSIYLP 259 >gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1603 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 20/234 (8%) Query: 2 AKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L L + H++ +P+ I E L E ++ E + + S Sbjct: 890 ERRMNERLQQVDKLKDQFLANTSHELRTPLQGIIGLSEALLEDELDPERKANLTMVVSSG 949 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEK 108 + ++ ++ I L + + S + + Sbjct: 950 KRLNSLVNDILDFSKLKNADIELDLRPISLHSMADVVLKNISPLVAGKSIELLNSVSVDF 1009 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166 S + ++ L+ + ++ I + + N+ + ++ G ++ Sbjct: 1010 PAASADENRLQQILYNLLGNAVKFTESGYIKIDALERDNDLVVCVEDTGPGIPPDKRDAI 1069 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L + + E D L+K Sbjct: 1070 FQEFTQGDASTTRAFSGTGLGLSISKRLVELHGGTMWLESEIDQGSKFFFSLQK 1123 >gi|317475545|ref|ZP_07934807.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908249|gb|EFV29941.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 594 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K +S M + + I H++ +P+ I L+ L E + + + Sbjct: 65 LDKEKQEEISQMKIRFYI--DISHELRTPLTLIVAPLQELIERIKGHWEHEKLSYIQRNT 122 Query: 61 IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L + Y + + + + + + ++ Sbjct: 123 NRLLHLVNQLMDYRRAELGIFELRPVYANAYKKVLNCFLNYENLSKRKDIDYNLYTELQD 182 Query: 115 RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + A +G +T+ + N + + G EK Sbjct: 183 EELLFDETYLDLIVNNLLSNAFKYTEKGECITVRLYKEDNNLVLQVIDTGVGI-PAEKQK 241 Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + S + I V L + + E S + Sbjct: 242 KIFERFYQAESGHEGSGIGLSLVQRLVELHHGHITLESKVGEGSTFSIYIP 292 >gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] Length = 798 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 60/237 (25%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + H+I +P+ I + LL + + + + +++ S+ Sbjct: 417 LNKAKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLLYKDEKDIKKQEKLKIIKDSS 476 Query: 61 IIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + ++ I + + +++S + Sbjct: 477 YTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRAKEKNITIKLSIDDKI 536 Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162 ++ NL A V ++V N + +G + Sbjct: 537 PKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEIYCEVLDSGVGISPSK 596 Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T D + + V L ++ L Sbjct: 597 TDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNSELGVGSTFYFTLP 653 >gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 929 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 62/239 (25%), Gaps = 30/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S + + + H+I +P+ I ELL + + + +R +SA Sbjct: 271 AKEQAEASSRAK--SEFLANMSHEIRTPMNGILGMTELLMDTELNPQQFDYLRSVKVSAE 328 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSWT 105 + + ++ + I ++ + +V Sbjct: 329 NLMDIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLP 388 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARF 160 I ++LLNL A +G + + + F ++ G Sbjct: 389 DTLIGDPGRLRQVLLNLAGNAVKFTDQGEVELLVSKQQELPGKELLLRFEVRDRGIGI-S 447 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I + L + E + L Sbjct: 448 PEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEIGLESVAGQGSTFWFTL 506 >gi|170748647|ref|YP_001754907.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655169|gb|ACB24224.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 925 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 79/247 (31%), Gaps = 34/247 (13%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54 + + + + + A+ L I HD + + AI +LL + + I+ Sbjct: 487 QRQLEQQVAQAQKMNAVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDPAFQDIMQIK 546 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 ++ A ++ + ++ +G+ + + +V+ + Sbjct: 547 QNANRAAGLVRQLLAFSRRQTLRPEVMNVGEALSELTLLLKRLLGERVALELKHGREVWP 606 Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISVQD-----------------SKNENIFS 150 + ++++NL + A ++P GGK+ I ++ + + + Sbjct: 607 VKADVNQFEQVIVNLAVNARDAMPEGGKLMIRTENVSDPGAAAGAEGRGGAPAGDHVLIE 666 Query: 151 LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 ++ G PE +I + + + V + ++ + + Sbjct: 667 VRDTGQGI-PPELMEKIFEPFFTTKEIGKGTGLGLSTVFGIVKQSGGTIDVQSKVGEGTA 725 Query: 209 LSALLEK 215 L + Sbjct: 726 FRIYLPR 732 >gi|170746837|ref|YP_001753097.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170653359|gb|ACB22414.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 519 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 64/240 (26%), Gaps = 28/240 (11%) Query: 2 AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM 50 + L S L A+ + S + H++ P+GAI N LL E Sbjct: 270 TQARLQELQSELAHVSRLSAMGEMASALAHELNQPLGAIANYTKGCRRLLARADPEAIAR 329 Query: 51 ---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVD 97 + + +F+ + + + + Sbjct: 330 TMEVLDKTAEQALRAGQIIRRLREFVARGEAEKRVEPVARLIEEASALALVGAREQGIAA 389 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKIN 154 + G + + ++L+NL A ++ +G + + ++ Sbjct: 390 RVAVDPRAGCVLADRVQVQQVLVNLLRNAREAMHQGDRRELTVEARSVDGETVEITVSDT 449 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G E ++ V + + + + RL E + L+ Sbjct: 450 GPGI-AAEVADRLFQPFVTTKRSGMGVGLSICRTIVEAHGGRLDVERNETGGATFRLTLQ 508 >gi|116748776|ref|YP_845463.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697840|gb|ABK17028.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 822 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 32/245 (13%) Query: 1 MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53 + K + L + + A+ L I HD + + I E+L ++ + ++ I Sbjct: 431 LQKKLQAQLFHAHKMEAIGTLAGGIAHDFNNLLQVIQGYAEMLLFGKEQDDPFQKELEEI 490 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------G 106 ++ + + S I L + ++ Sbjct: 491 FFAAKRGGELTRQLLTFSRRIESKPRPIHLNRQIVETRKLLERTIPKMITIELNLATDLR 550 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSL 151 + ++L+NL + A ++P G + + S+ Sbjct: 551 PVNADPAQFEQVLMNLAVNARDAMPEGGVLTIETRNVVLDELFCMGQVGVSPGEYVMLSV 610 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 NG+ I + + + V + + +L Sbjct: 611 SDNGHGIDAGTL-EHIFEPFYSTKGVGRGTGLGLAMVYGIVQSHAGCILCFSEAGKGTRF 669 Query: 210 SALLE 214 L Sbjct: 670 DIYLP 674 >gi|82779179|ref|YP_405528.1| putative histidine kinase [Shigella dysenteriae Sd197] gi|309784320|ref|ZP_07678959.1| HAMP domain protein [Shigella dysenteriae 1617] gi|81243327|gb|ABB64037.1| putative histidine kinase [Shigella dysenteriae Sd197] gi|308927827|gb|EFP73295.1| HAMP domain protein [Shigella dysenteriae 1617] Length = 754 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQPPAWPAWIDVSQL 505 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|51245778|ref|YP_065662.1| Ntr family two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50876815|emb|CAG36655.1| related to two-component system sensory/regulatory protein (Ntr family) [Desulfotalea psychrophila LSv54] Length = 1018 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 29/242 (11%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53 + L + + A+ L I HD + + I EL + + V++ Sbjct: 637 KSRLELQLQQAQKMEAIGTLAGGIAHDFNNILAVILGYAELAKDEAPANSVIEKDLDQVI 696 Query: 54 ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R + + L + +++ + +Q Sbjct: 697 VGGNRAKELVKQILAFSRQEKVERLPMKVQVLLKETMRMLRPSLPSTIEIQTEIDPLCGF 756 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKV--------------TISVQDSKNENIFSLKI 153 + + +I++N+ A+ ++ + G S S + + + Sbjct: 757 ILADPTQVHQIIMNICTNANHAMDKSGGRLNIELKRISIDEENEHSSLRSGDYVVLVVAD 816 Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G I + + + E R+ + H S Sbjct: 817 TGEGIAPNNIGKIFEPYFTTKEIGKGTGMGLATIHGIIREYGGRIDVVSVLGHGSAFSVY 876 Query: 213 LE 214 Sbjct: 877 FP 878 >gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 952 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + ++ + + H++ +P+ I +L+LL + +E +L+ S S+ Sbjct: 458 LQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPEETQRLLAAMSNSS 517 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104 + LK + ++ + + I ++ Sbjct: 518 GLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYLPLVVRKRLVMYCFIEPEV 577 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L NL A G + + V+ F ++ G F + Sbjct: 578 PDSVAGDIMRIQQVLSNLLSNAIKFTDT-GCIILQVRVQDFYLEFRIRDTGLGIPFRDVM 636 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + + + Sbjct: 637 KLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGDIAVESEPGMGSIFTVRIP 691 >gi|319793166|ref|YP_004154806.1| pas/pac sensor signal transduction histidine kinase [Variovorax paradoxus EPS] gi|315595629|gb|ADU36695.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax paradoxus EPS] Length = 445 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 59/238 (24%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 + ++I + + + + H+I +P+ + +E L + + L+ Sbjct: 196 LTRDITALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQNLPLDADERMRYLSLMGQQ 255 Query: 57 SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 S + + + G + + Sbjct: 256 SHRMETLVNDLLTLSRLEGSASPSGNQWIRIRALLAQCEDEGRGLSGRLAPLGHRLSFTI 315 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFP 161 E E + NL A P GG+V +S + +++K G Sbjct: 316 DAESEISGAPTELQSAMSNLLSNAIRYTPGGGEVAVSWRVLPDGRGEYAVKDTGPGIAAE 375 Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V +A + L E + + Sbjct: 376 HIPRLTERFYRIDRSRSRETGGTGLGLAIVKHIAQRHGAELRIESTVGKGSRFALVFP 433 >gi|311893920|dbj|BAJ26328.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1247 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 56/237 (23%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + L+ +D + S I H++ +P+ I E L + +V + Sbjct: 324 QRRRAEQLAELDRAKTVFFSNISHELRTPLTLIAGPAEDLRRRLADADPDVREDAETIHR 383 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVS 103 +A+ VD ++ V + Sbjct: 384 NALRLGRLVDTLLDFSRIEAGRMRARPRPVDLAAVTAELAAVFRPAVQRAGLTLEIDCPP 443 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + K++ NL A P G + S++ G E Sbjct: 444 LSAPVAVDPGLWEKVVFNLLGNALKFTPEGTVRVRVRERDGRAL-VSVEDTGIGVPAAEL 502 Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + I L + + + L Sbjct: 503 P-RLFDRFHRVEDARARSHEGSGIGLALAKELVELHDGTITAASTAGSGTTFTVDLP 558 >gi|307261423|ref|ZP_07543096.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868880|gb|EFN00684.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 586 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + ++ + ++ ++SA+ Sbjct: 86 SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 145 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSLK G E+ Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306 >gi|307247923|ref|ZP_07529957.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250179|ref|ZP_07532137.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306855573|gb|EFM87742.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857778|gb|EFM89876.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 586 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + ++ + ++ ++SA+ Sbjct: 86 SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 145 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSLK G E+ Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306 >gi|303251394|ref|ZP_07337571.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649748|gb|EFL79927.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 616 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + ++ + ++ ++SA+ Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 175 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 176 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 235 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSLK G E+ Sbjct: 236 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 295 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 296 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 336 >gi|209966017|ref|YP_002298932.1| sensory box histidine kinase [Rhodospirillum centenum SW] gi|209959483|gb|ACJ00120.1| sensory box histidine kinase [Rhodospirillum centenum SW] Length = 843 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 16/228 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLS 56 A+ F ++ V L + HD + + AI N+LEL + ++ R Sbjct: 466 AQERLFQAQKLETVGQLTGGVAHDFNNLLTAIVNNLELARRDPAGAAERLEGALKAARAG 525 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + L F R+ D L DI ++ + V V+ + + Sbjct: 526 TELVRRLLAFARMQPLEPQPTDPGRLLHDILPLLRRAVGERVEVSVTAGRRLPPVLVDPV 585 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLARFPEKFTQIV 168 ++ L +A + + + + ++ G PE ++ Sbjct: 586 QLENALLNLAVNARDAMPGGGRLEIRAGVELAEDGTPQVVLTVADTGTGM-TPEVAQRMF 644 Query: 169 DGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ ++ E V Sbjct: 645 EPFFTTKPPGKGTGLGLASLYGFVRQSGGQVRVETAPGRGTVFHLSFP 692 >gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 582 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 58/233 (24%), Gaps = 31/233 (13%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + + H++ +P+ A+ E L ++ + +Q+I S + Sbjct: 348 ERIRSEFVANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNRLIGD 407 Query: 67 --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRER 115 + VD + + Q+++ V Sbjct: 408 ILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENELYIEADEDRL 467 Query: 116 AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +IL+NL + P ++ + G + +I Sbjct: 468 RQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGIPEKDLP-RI 526 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L + + E + L Sbjct: 527 FERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIELP 579 >gi|165976354|ref|YP_001651947.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252978|ref|ZP_07339133.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|165876455|gb|ABY69503.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648169|gb|EFL78370.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 616 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + ++ + ++ ++SA+ Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 175 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 176 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 235 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSLK G E+ Sbjct: 236 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 295 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 296 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 336 >gi|116073068|ref|ZP_01470330.1| adaptive-response sensory kinase [Synechococcus sp. RS9916] gi|116068373|gb|EAU74125.1| adaptive-response sensory kinase [Synechococcus sp. RS9916] Length = 397 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 69/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54 + + + ++ L + H++ +P+ A +L+ I+ +L Sbjct: 142 LRQENETLIDRLEAQERLLRMVAHELRTPLTAATLALQSQQLGQIDHNRFQDVLKRRLEE 201 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 ++ +S + + I ++ + ++ D VQ + Sbjct: 202 IALLSKDLLEVGSTRWEAMFNPQRLNLATVAAEAILELEKQWLGRDVTVQTDIPTDLPKV 261 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A GG+V++++ + S+ +G E+ Sbjct: 262 YADQRRMRQVLLNLLENALKFTQDGGQVSLTMLHRTSQWLQVSVCDSGPGIPTQEQERIF 321 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ S + + + ++ + Sbjct: 322 LDRVRLPQTSSETSGFGVGLSVCRRIVEVHGGKIWVVSEPGEGACFFFTVP 372 >gi|73748783|ref|YP_308022.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73660499|emb|CAI83106.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1262 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 + S L A+ + + I H+I +P+ + +L E + +Q+ Sbjct: 884 EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPADVMDELQI 943 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107 I S + +K M V S + + ++ + V + + Sbjct: 944 INSGSQRVVEIVKRMLTFARQAKPVRSSVNITELIDSTLDLRSYVLKTANIEVVRHYEPD 1003 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFP 161 L+ + +I + + + K V+ S + NG Sbjct: 1004 LPLLTVDSGQIQQVILNLILNAEYSMKKAHEKGILTISVKKEGEWVRMSFRDNGLGM-SA 1062 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + E++ + E I + L Sbjct: 1063 ETLGKLFQPFFTTKDPGEGTGLGLSLSHGIILEHEGTIRGESILGEGAEFTIELP 1117 >gi|186680570|ref|YP_001863766.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463022|gb|ACC78823.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 768 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 69/231 (29%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+++ + + + A + S HD+ P+ + N ++LL+ E+ S + Sbjct: 518 LAQDLERSNAELKKFAYVAS---HDLQEPLNQVVNYVQLLEMRYSEELDEDAQEFISYAV 574 Query: 61 I--IRLKFMRLAFGYTGSVDSLIGLGDIE-----------QVIEDFIAVDKRVQVSWTGE 107 ++ + VD + + + + Sbjct: 575 QGVSLMQTLIDDVLAYSKVDMQAIAFQMNDVETALMRGLGNLRQRINETGATITHDPLPT 634 Query: 108 KIDLSRERAKILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKF 164 + S + ++ NL A + ++ + + ++ +FS++ NG ++ Sbjct: 635 VMADSTQLMQLFQNLIGNAIKFHSDQPPQIHVGAERIEDAWLFSVRDNGIGIDPKFSDRI 694 Query: 165 TQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ R+ E + Sbjct: 695 FVIFQRLHTRDEYTGTGMGLAICKKIVECHRGRIWVESELGQGATFYFTIP 745 >gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1130 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 64/238 (26%), Gaps = 27/238 (11%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + L +D L + H++ +P+ I E + + ++++ + +I + Sbjct: 440 ERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGNISELQNKNLSMIVV 499 Query: 56 SSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 S + + S+ + + +V E + + + + I+ Sbjct: 500 SGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEKDVQLINAISS 559 Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARF 160 +I+ NL A G + + ++ G Sbjct: 560 DLPPVEADENRIQQIMHNLVGNAIKFTEVGVITISAELIDLKNNPKMAITVSDTGIGIPE 619 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + DG+ E + L + + + + L Sbjct: 620 DKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISVKSNPGVGSEFTFTL 677 >gi|328953514|ref|YP_004370848.1| PAS/PAC sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453838|gb|AEB09667.1| PAS/PAC sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 838 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + + ++ + +L I HD + + I + +L L +Q I +S Sbjct: 453 EARMREVQKLESLGVLAGGIAHDFNNLLMGIMGNADLAQLSLSPASPAIPYLQEITRASQ 512 Query: 59 SAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 A M + + + + +V A+ Sbjct: 513 RAADLCNQMLAYSGKGRFLVRRYNLSEIVREMARMLEVSISKKAMLNYRLADALPAVEAD 572 Query: 112 SRERAKILLNLFMVAHASLPRGG-------------------KVTISVQDSKNENIFSLK 152 + + +I++NL + A +L + Sbjct: 573 ATQLRQIIMNLIINASEALNDQNGVITLSTGVMDCDRRYLSESYLDDNLAEGRYVFLKVS 632 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +G E +I D + + V+ + ++ + D + L Sbjct: 633 DSGAGI-DEETRQRIFDPFFTTKFTGRGLGLAAVLGIVRGHRGAIRVGSEPDRGTTFTIL 691 Query: 213 LE 214 L Sbjct: 692 LP 693 >gi|320353326|ref|YP_004194665.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320121828|gb|ADW17374.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 1165 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 67/239 (28%), Gaps = 30/239 (12%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIRLS 56 M+ + L I HD + +G I E+ E + ++++ + Sbjct: 779 QLQQAQKMEAIGTLAGGIAHDFNNLLGVIIGYGEIAKEALPDHSTTARDLEKILEAGERA 838 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 + L F R A ++ + + + +++ + ++ + + + Sbjct: 839 ADLVKQILAFGRRANVEKIPLEPVHLVKEAVKLLRATLPSTITIRQQLSARTGTILADPT 898 Query: 116 --AKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKINGNL 157 +I++NL A ++ + + + ++ G Sbjct: 899 QIHQIVMNLCTNAFHAMEQTGGVLDITLAECERDVQDLLYHPQVRPGKFVVLTVADTGPG 958 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + V + + + E L Sbjct: 959 I-PPEIRDKIFEPYFTTKGVGKGTGLGLAIVHGIVADTGGFITCESEPGQGTAFHVFLP 1016 >gi|315640982|ref|ZP_07896073.1| sensor histidine kinase [Enterococcus italicus DSM 15952] gi|315483253|gb|EFU73758.1| sensor histidine kinase [Enterococcus italicus DSM 15952] Length = 464 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 68/222 (30%), Gaps = 17/222 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 + L L + I H++ +P+ + ++E + + I E +Q + + Sbjct: 241 KQLGLRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNI 300 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAK 117 + D L + + + + ++ +++ + + Sbjct: 301 EVINKIEAKYDHLNKTEFNIYKLIESVIENFASKIESKDLHVEIQGDNINISADKDKMNQ 360 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNV 172 +++NL A + G + S+ +K+ + ++ NG F + + Sbjct: 361 VVINLLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSR 420 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V + +K + + L Sbjct: 421 SRALGGQGIGLAIVKSVVEAHKGSITVKSKLGLGTKFVIKLP 462 >gi|315169595|gb|EFU13612.1| PAS domain S-box [Enterococcus faecalis TX1342] Length = 591 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGPYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|254796403|ref|YP_003081239.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois] gi|254589640|gb|ACT69002.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois] Length = 447 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 21/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60 AK +SS + + + H++ +P+ AI +L+ + E + S Sbjct: 211 AKESIEEISSQK--SQFLANVSHELKTPLNAIIGFSDLIRTAEVLGTEHREYANDIYYSG 268 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108 + D + ++ K V+ ++ + Sbjct: 269 NHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKKIKIVKSFFSNKIL 328 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++LN+ + G + IS+ +E + NG + + Sbjct: 329 IKSDHKRVKQVILNILSNSIKFTNEDGLIKISIIRLPSEIEIEISDNGVGIPEKDIAKAL 388 Query: 168 VDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D I L E + V+ L Sbjct: 389 SVFGQSNTELSRKYDGAGIGLPLSKKLVELMGGAFEIESKEGSGTVVKIRLP 440 >gi|229086573|ref|ZP_04218742.1| hypothetical protein bcere0022_31540 [Bacillus cereus Rock3-44] gi|228696655|gb|EEL49471.1| hypothetical protein bcere0022_31540 [Bacillus cereus Rock3-44] Length = 424 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 65/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDMKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISENLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + I +K +G E+ ++ Sbjct: 316 KTKLKQAIMNIVKNGIEAIQGNKGYLKVTAIQKDHAIIVRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIITLP 418 >gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 453 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 50/220 (22%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKF--------- 66 + + H+I +P+ +I E L + G + + A Sbjct: 221 FVANVSHEIRTPLTSIRGFAEALHDGGINDPKTAREFSGIILSHAERLGNIVSDLLHLSE 280 Query: 67 ------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + S T + +L Sbjct: 281 LETGKAIMRYGSVSLSRQIAHIRDVYADHARKKGIRFIVQLPEETLTYETDEGKMDLVLG 340 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P GG+V + +F ++ +G E +I + Sbjct: 341 NLVDNALKYTPEGGEVFFGGWREGDAIVFEVRDSGVGIPRTEV-DRIFERFYRVDRARSR 399 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + Sbjct: 400 EMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFLVRVP 439 >gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 404 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 61/243 (25%), Gaps = 29/243 (11%) Query: 2 AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQL 52 + + + L + + + H++ +PI AI ++L + L Sbjct: 158 RQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRRYPEPLTPAQTDL 217 Query: 53 IRLSSMSAIIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 ++ ++ L + ++ + + + + Sbjct: 218 VQRIFDNSKNLLTLLNDVLDFSKIEAGKLILHPHEFDLKQLVVLTTEELRSLAISKNLSL 277 Query: 99 RVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 ++QV KI + +IL+NL A GG + + + +++ G Sbjct: 278 QIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGGVSVTVWELNPDLMAIAVEDTGIG 337 Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + L ++ + Sbjct: 338 IAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESLIKMMHGKITVTSELGKGSIFQIE 397 Query: 213 LEK 215 + Sbjct: 398 FPR 400 >gi|168784716|ref|ZP_02809723.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC869] gi|261225212|ref|ZP_05939493.1| putative histidine kinase [Escherichia coli O157:H7 str. FRIK2000] gi|261255536|ref|ZP_05948069.1| putative histidine kinase [Escherichia coli O157:H7 str. FRIK966] gi|189374926|gb|EDU93342.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC869] Length = 756 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 71/232 (30%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 389 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 448 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 449 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 508 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G + Sbjct: 509 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGCGM-SQAVKS 567 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 568 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 619 >gi|167723946|ref|ZP_02407182.1| two-component sensor kinase protein [Burkholderia pseudomallei DM98] Length = 723 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHPRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|149201950|ref|ZP_01878924.1| periplasmic sensor signal transduction histidine kinase [Roseovarius sp. TM1035] gi|149144998|gb|EDM33027.1| periplasmic sensor signal transduction histidine kinase [Roseovarius sp. TM1035] Length = 644 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53 + + S L ++ + + + H+I +P I +L+++ + + LI Sbjct: 409 LETTYQQLVMSEKLASIGEITAGVAHEINNPAAVIQGNLDVIRQTLGAHTEPVITELNLI 468 Query: 54 RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VS 103 + + + +VD L D +++ + Sbjct: 469 DRQIGRITAIVGKLLQFARPGEFGTFEENVDLASVLRDCLVLVDHVVTRSGHTVTLNAHP 528 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLAR 159 T E ++++NL A ++ G +T++ + + + G Sbjct: 529 DTPPVRINPGELQQVIINLVTNAAQAMKTPGHLTLTTRPEDRGSCPGAALLVADTGPGIP 588 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + R+ + + + Sbjct: 589 KDKLPLVFDPFFTTKQGEGTGLGLSVSQTLIQQAGGRITVRNRVEGGAEFTVWMP 643 >gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 720 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 55/235 (23%), Gaps = 25/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 A+ + + + + H++ +P+ I ++L + + + + S Sbjct: 254 ARRMAEAANRAK--GEFLANLSHELRTPLNGILGYAQILGRDDSLSLRQRDGVAVIQQSG 311 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SW 104 L +R+ + + +I V + + V Sbjct: 312 EHLLTLIDETLDFAKVEAGKLRIEICDVPLAGLVDTIREIIGVKAEQRRLAFACSVAADA 371 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++LLNL A RG + F + G E Sbjct: 372 PCGVRADEHRLRQVLLNLLSNAVKFTDRGEVRLFIRRGESGAVRFEVHDTGIGI-CAEYH 430 Query: 165 TQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + + V L Sbjct: 431 ETIFMPFEQAGGAERRAGGTGLGLAISRQFVRAMGGEVNVDSVVGRGSVFWFELP 485 >gi|116333654|ref|YP_795181.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC 367] gi|116099001|gb|ABJ64150.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC 367] Length = 536 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 23/215 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM------------QLIRLSSMSAIIRLKFMRL 69 + H++ +P+ I +E+LD G ED + + ++ + + ++ Sbjct: 281 VSHELRTPVAIIQGHMEMLDRWGKEDPEVLDESIKASLQETKRMKSLVQEMLDLQRAEQI 340 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLFMV 125 Y V + + + I D + + +IL+ L Sbjct: 341 EVNYPNEVTDVSEVVEQVFDNFKMIHPDYVFILDDDVHQPLQAQIYRNHLEQILIILMDN 400 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A +V ++ + +++ G E ++ + T + Sbjct: 401 AVKYSQTRKEVHLTYESDLRNLEVAVQDFGEGI-SQENRKRVFNRFYRVDKARSRTKGGN 459 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L ++ E H V L Sbjct: 460 GLGLAIAKRLIEAYHGQITIESALGHGSVFRISLP 494 >gi|83594821|ref|YP_428573.1| Cache sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577735|gb|ABC24286.1| Cache sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 1041 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 61/220 (27%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-------KFMRLAFG 72 + + H+I +P+ A+ LL + +E + R S L F R+ G Sbjct: 510 ATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQRSGEHLLGLINDILDFSRIDTG 569 Query: 73 YTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123 VD L Q + +V + + S+ +IL+NL Sbjct: 570 RLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDRALAPGYRGDSQRLRQILVNLV 629 Query: 124 MVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174 A +G +++ + + G DG+ Sbjct: 630 GNAVKFTDKGMVTVQGDVLKIENDIHWLRLRVVDTGCGIPRERFNDLFAAFQQLDGSATR 689 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + LA + V S ++ Sbjct: 690 THGGTGLGLAISRKLARLMGGDITVSSTPGEGSVFSVVVP 729 >gi|33865287|ref|NP_896846.1| adaptive-response sensory kinase [Synechococcus sp. WH 8102] gi|54036403|sp|Q7U871|SASA_SYNPX RecName: Full=Adaptive-response sensory-kinase sasA gi|33632456|emb|CAE07268.1| two-component sensor histidine kinase [Synechococcus sp. WH 8102] Length = 383 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 67/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54 + + + + L + H++ +P+ A +L+ I+ +L Sbjct: 132 LRQENETLIDRIHAQERLLRMVAHELRTPLTAAALALQSQRLGQIDMTRFQDVITRRLEE 191 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 + ++S + + I ++ + ++ + ++ + Sbjct: 192 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIRTDIPSDLPKV 251 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A GG +T+++ + S+ +G E+ Sbjct: 252 FADQRRMRQVLLNLLENALKYTGNGGHITLTMLHRTSQRVEVSVCDSGPGIPTEEQQRIF 311 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + R+ + + Sbjct: 312 LDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVSEPGEGACFTFTVP 362 >gi|307154472|ref|YP_003889856.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306984700|gb|ADN16581.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 373 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 61/217 (28%), Gaps = 22/217 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMR------ 68 L S + H++ +P+ + LE L + + ++L++ + ++ Sbjct: 157 LISDLTHELRTPLTVVRGYLEQLSDYSIEPSTELYLKLVK-ETRRLERLTYDLQELSKAE 215 Query: 69 --LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNL 122 + L + + D + + V + + +IL+NL Sbjct: 216 AGYLVINIQPLYLYTLLQSLIEKFSDQLMDEGPVLALDCPADLPPVLADIDRTEQILVNL 275 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--ID 177 A +G + + + ++ G + F + + + Sbjct: 276 LGNALRYTEKGNILLKAWLEKDR-IWIAVIDTGIGISQEDLPFVFERFWRADRSRSRYSG 334 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L ++ E + L Sbjct: 335 GSGIGLAIVRRLVELQNGQIEVESELGKGTIFRFCLP 371 >gi|228915803|ref|ZP_04079380.1| hypothetical protein bthur0012_30210 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843845|gb|EEM88917.1| hypothetical protein bthur0012_30210 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 436 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|228934471|ref|ZP_04097306.1| hypothetical protein bthur0009_29270 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825108|gb|EEM70905.1| hypothetical protein bthur0009_29270 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 436 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|229042245|ref|ZP_04189998.1| hypothetical protein bcere0027_3160 [Bacillus cereus AH676] gi|229108016|ref|ZP_04237642.1| hypothetical protein bcere0018_3080 [Bacillus cereus Rock1-15] gi|229143136|ref|ZP_04271568.1| hypothetical protein bcere0012_3090 [Bacillus cereus BDRD-ST24] gi|228640217|gb|EEK96615.1| hypothetical protein bcere0012_3090 [Bacillus cereus BDRD-ST24] gi|228675416|gb|EEL30634.1| hypothetical protein bcere0018_3080 [Bacillus cereus Rock1-15] gi|228727104|gb|EEL78308.1| hypothetical protein bcere0027_3160 [Bacillus cereus AH676] Length = 369 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 367 >gi|269128961|ref|YP_003302331.1| multi-sensor signal transduction histidine kinase [Thermomonospora curvata DSM 43183] gi|268313919|gb|ACZ00294.1| multi-sensor signal transduction histidine kinase [Thermomonospora curvata DSM 43183] Length = 1383 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 58/238 (24%), Gaps = 29/238 (12%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53 + +L L + I H+ +P+ I LE L E +++I Sbjct: 331 RAQQRRAEELAELNRAKTVFFTDISHEFRTPLTLIVGPLEELRSRLGPADQWVRENLEII 390 Query: 54 RLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101 R S++ + + D + D+ V + Sbjct: 391 RHSALRMTRLVDTLLDFARIEAGRMEARYQPTDLAVFTADLAGVFRAAVDKAGLRLEVDC 450 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 KI+LNL A G + + G Sbjct: 451 PPLPEPVYVDRGMWEKIVLNLLSNALKFTFEGSITVRLRAEDGQAV-LRVSDTGVGMSEQ 509 Query: 162 E---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + +I+ I V L H + + + + L Sbjct: 510 DLPRVFERFQRVKAAQTRSIEGSGIGLALVRELVHLHGGTIGVDSTLGKGTTFTIRLP 567 >gi|255693529|ref|ZP_05417204.1| putative two-component sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260620730|gb|EEX43601.1| putative two-component sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 480 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 72/238 (30%), Gaps = 26/238 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE +L + Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDSRVGSLNDEQQELAQS 301 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + +G + + ++IE I ++ + + Sbjct: 302 IQDNSDRLLSITSELLNMTQVESGKLQLKPRVTKPIELIEYAIKANRVQAEKFNIQVEVQ 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLA 158 E +L NL A G++ I + N ++ G Sbjct: 362 YPEEKMGKLFVDSEKIAWVLTNLVSNAIRYSAENGRIIIGARKTKDNWIEMFVRDFGKGI 421 Query: 159 RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E + L+ Sbjct: 422 DPRYHQSIFEHYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESEIGKGSCFTLRLK 479 >gi|225619216|ref|YP_002720442.1| sensory box histidine kinase [Brachyspira hyodysenteriae WA1] gi|225214035|gb|ACN82769.1| sensory box histidine kinase [Brachyspira hyodysenteriae WA1] Length = 393 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQ 51 ++ + L +L L + + H+I +P+G+I ++L+D E + + Sbjct: 143 ESAQKLKRAEQLASLTTLAAGVAHEIKNPLGSISIYVQLIDKIIKKNMDNECQCYKDFKE 202 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103 + + + ++ I L I + + + + + Sbjct: 203 YSDIIKEEISRLEETINSFLFSVRKLELNIEDVNINELILSTIAFLKYEIEKNNVNIDIK 262 Query: 104 WTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKING 155 + + + L + + L+N+ A ++ N + S+K G Sbjct: 263 FDKDNLILKLDEKYIKQSLINIIQNAIDAMSDNADDKKKEIFIKLKTVDNYAVISIKDTG 322 Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E +I + + + V+ + + + E L Sbjct: 323 SGI-KEESLGKIFEPYFTTKRHGTGLGLTNVVRIVEAHNGNVTIESEYGKGSEFIIKLP 380 >gi|197118536|ref|YP_002138963.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197087896|gb|ACH39167.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 753 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRL 55 L S + A+ L + HD + +G I + EL ++ Sbjct: 376 EQLLQSQKMEAVGKLAGGVAHDFNNMLGVIIGNAELAMMEVEPSGKLHERLQGILDAANR 435 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S+ L F R +D + + +++ I D V S + + + Sbjct: 436 SADITRQLLAFSRQQHAKPKVLDLNEVIAKMLKMLHRLIGEDIEVVWSPGRDIWKVKLDP 495 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISV---------------QDSKNENIFSLKINGNL 157 +I+ NL + A ++ G++ I + + +G Sbjct: 496 TQLDQIMANLCVNARDAIAGIGRMDIRTENVELSPEQKNPAVEMPQGRCVMLEVSDSGCG 555 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + +N + + Sbjct: 556 M-RREVMERIFEPFYTTKEVGRGTGLGLATVFGIVKQNDGHIEVQSEPGAGTSFRIYFP 613 >gi|116251585|ref|YP_767423.1| two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256233|emb|CAK07314.1| putative two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 564 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 +A+ N +L + H+ +P+ I + + L E + + IR Sbjct: 322 LAQERNIN----ELQRQFVAMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 377 Query: 55 LSSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------ 107 S + ++ + TG +D + +I+ + S + Sbjct: 378 ASVTRIVDLMESILSAGRLDTGKIDINYDACALRSLIKTCCERQSTIAKSHSFVLDIDGL 437 Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 R A++ NL A P +V ++ S+ +G + Sbjct: 438 PESIDADPRTLAQVFTNLLSNAVKYAPGTSEVRVTAWAETGNVKVSISDDGVGIDAEDVP 497 Query: 164 --FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I I V + + + + L Sbjct: 498 RLFQRYFRARTSTGIAGTGIGLNLVKQIIELHNGSIEVRSARGCGSTFTVTLP 550 >gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] Length = 878 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 25/235 (10%) Query: 4 NICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 ++ L + + + + + H+I +P+ I +LL+E + ++ + +S + Sbjct: 484 DLNVQLKKASETKSEFLANMSHEIRTPLNVIVGMSDLLEESPLNEDQKHYVDISKKAGHN 543 Query: 63 RLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L + + + + ++ ++ ++ V +S Sbjct: 544 LLSIINDILDISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLSEDTHS 603 Query: 109 IDL--SRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 I + ++L NL + +V + + + IF + G + Sbjct: 604 IFMGDPTRIRQVLSNLISNSLKFTTDGSIRVEVMKNQTEMEGNLIFHVSDTGIGIPRDKI 663 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + L + E S L Sbjct: 664 PQLFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGDITVESELHRGSRFSFSL 718 >gi|148544451|ref|YP_001271821.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|184153815|ref|YP_001842156.1| two-component system histidine kinase [Lactobacillus reuteri JCM 1112] gi|227363121|ref|ZP_03847256.1| sensor histidine kinase [Lactobacillus reuteri MM2-3] gi|325682773|ref|ZP_08162289.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A] gi|148531485|gb|ABQ83484.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|183225159|dbj|BAG25676.1| two-component system histidine kinase [Lactobacillus reuteri JCM 1112] gi|227071839|gb|EEI10127.1| sensor histidine kinase [Lactobacillus reuteri MM2-3] gi|324977123|gb|EGC14074.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A] Length = 491 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50 M + + +D + S + H++ +P+ I LE+L G +D + Sbjct: 246 MFNEMLDRMQRYIDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPKVLDDSIKATL 305 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105 + ++ + + ++ + + + + D ++ Sbjct: 306 IETRRMKNLVQEMLDLSRAEQVEINFRNQHTIVNDVVHQVYNNFKMLYPDFTFRLDDDLK 365 Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 ++L+ L A K + ++ G PE Sbjct: 366 EPIMVDIYRDHLEQVLVILCDNAVKYSTDDHKEIHIILSRGMNTVEIGIQDFGEGI-SPE 424 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + L + E + +L Sbjct: 425 NVKRVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSVGAGSLFRIILP 482 >gi|114048722|ref|YP_739272.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890164|gb|ABI44215.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1118 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 57/214 (26%), Gaps = 21/214 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------------ 69 + H+I +P+ AI ++L E +++E + + + SA + + Sbjct: 550 MSHEIRTPMNAIIGFSDILLESVLDNEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKL 609 Query: 70 --AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMV 125 D + + + + V ++ + I ++L+NL Sbjct: 610 ELENRVFCLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGN 669 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHD 180 A G + N F + G + D ++ Sbjct: 670 AVKFTCEGKVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTG 729 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L +L E + Sbjct: 730 LGTTISKQLVELMGGQLEAESTLGQGSTFRFTIP 763 >gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] Length = 762 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK ++ ++ S + H+I +P+ I LL E + E + R+ SA Sbjct: 376 AKTCAEQANAAK--SVFLSTMSHEIRTPMNGIIGMTGLLLETPLNTEQREFARIIETSAD 433 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDFIAVDKRVQVSWT 105 L + ++ + + + + +A++ + + Sbjct: 434 ALLTVINDILDFSRIEAGKLMVESVAFALPATVAGCIDVIAGKACDKGLALNCTIDPALP 493 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---- 161 + + +ILLNL A G F + +G Sbjct: 494 VFVMGDAGRLRQILLNLLGNAIKFTATGKVALHVTPVLAGAVRFVVADSGIGIDQKNAAE 553 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +DG++ + L + E + L Sbjct: 554 LFIPFHQIDGSITRKYGGTGLGLSITKRLVELMGGTIGFESVPGQGATFWVELP 607 >gi|320102737|ref|YP_004178328.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319750019|gb|ADV61779.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 583 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL----------------DEV 43 + + S L L + + H+I +P+ +I E L +E Sbjct: 308 QERSRQLIRSERLAGVGFLAAGVAHEINNPLASIAFCAEALERRLISPNRPPSSSGGEEG 367 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAV 96 + +++I+ + + + + + + ++ + + + Sbjct: 368 DAVRDYLRMIQEEAFRCKRITEKLLDFSRTSELRRAPTELNALVTDVVEMVRHLGKYRGK 427 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 V+ + + ++E ++ LNL + A S+ GG + I+++ ++ NG Sbjct: 428 SIEVKSTEAVYALADAQEIKQVALNLVVNALDSVDPGGWLVITLRYAEGMAEMEFVDNGK 487 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALL 213 PE I + + + + ++ + E D L Sbjct: 488 GM-TPEVLENIFEPFFTTRPVGKGTGLGLSITHRIISQHDGLIFAESDGPDRGARFVVRL 546 Query: 214 E 214 Sbjct: 547 P 547 >gi|315920858|ref|ZP_07917098.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313694733|gb|EFS31568.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1352 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I ++V+ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + E Sbjct: 875 ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V K+ I +K G E Sbjct: 935 QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + E L+ Sbjct: 995 QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043 >gi|331664824|ref|ZP_08365729.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA143] gi|331058072|gb|EGI30054.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA143] Length = 778 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTTEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|301167603|emb|CBW27186.1| two-component sensor kinase [Bacteriovorax marinus SJ] Length = 615 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 8 NLSSMDLVALL----CSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57 N+S L + + + H++ +P+ A+ +++L E E + I +S Sbjct: 383 NISHKKLAQQMREDFVTNVSHEVRTPLTAMKGYVQILLGMKELTENPTVKESLSKIEHNS 442 Query: 58 MSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 I + + + + + + ++ ++ Sbjct: 443 NRLAILFQEILNLSMIESRHKLDLVKSSTQDITQNVLMNLKQVHKNSNRKIHCDYSAKEV 502 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165 + ++L NL ++ + G+ I + +++ ++ NG F Sbjct: 503 LVDSSLIEQVLTNLIDNSYKYANQDGESFIKWEQNESSFTLLVEDNGPGIEAIHQKRIFE 562 Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + V + ++K + D V ++ Sbjct: 563 RFYRVDSSRSRSLGGTGLGLSIVKHIVQKHKGTISVYSNDLGGVSFKIIIP 613 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + + + L + + H++ +P+ AI E + E + + +Q I Sbjct: 687 LRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQKQALQTIE 746 Query: 55 LSSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWT 105 S+ + + + +D + + + V Sbjct: 747 RSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGISINVQIP 806 Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKING 155 DL + ++L+NL A P GK + K+ F++ G Sbjct: 807 QALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRFAVIDTG 866 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E+ +++ + + V + + + Sbjct: 867 IGIN-EEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVGSGSQF 925 Query: 210 SALLE 214 + Sbjct: 926 IFEIP 930 >gi|262405544|ref|ZP_06082094.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294644578|ref|ZP_06722332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809610|ref|ZP_06768303.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262356419|gb|EEZ05509.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292640131|gb|EFF58395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443222|gb|EFG11996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1352 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I ++V+ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + E Sbjct: 875 ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V K+ I +K G E Sbjct: 935 QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + E L+ Sbjct: 995 QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043 >gi|260172565|ref|ZP_05758977.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1324 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I ++V+ + + S + Sbjct: 789 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 846 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + E Sbjct: 847 ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 906 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V K+ I +K G E Sbjct: 907 QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 966 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + E L+ Sbjct: 967 QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1015 >gi|237720524|ref|ZP_04551005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|293371540|ref|ZP_06617958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298480439|ref|ZP_06998636.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|299146986|ref|ZP_07040053.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|229450275|gb|EEO56066.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|292633488|gb|EFF52053.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298273260|gb|EFI14824.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298514871|gb|EFI38753.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1352 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I ++V+ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + E Sbjct: 875 ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V K+ I +K G E Sbjct: 935 QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + E L+ Sbjct: 995 QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043 >gi|237716769|ref|ZP_04547250.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229442752|gb|EEO48543.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1344 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I ++V+ + + S + Sbjct: 809 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 866 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + E Sbjct: 867 ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 926 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V K+ I +K G E Sbjct: 927 QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 986 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + E L+ Sbjct: 987 QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1035 >gi|160884022|ref|ZP_02065025.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483] gi|156110752|gb|EDO12497.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483] Length = 1352 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62 L+ L + I H+ +P+ I +E L + I ++V+ + + S + Sbjct: 817 ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111 + + G + + ++ + + K + E Sbjct: 875 ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ K++ NL A ++I+V K+ I +K G E Sbjct: 935 QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994 Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ I + + + E L+ Sbjct: 995 QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043 >gi|153932658|ref|YP_001382669.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|153935782|ref|YP_001386220.1| sensor histidine kinase [Clostridium botulinum A str. Hall] gi|152928702|gb|ABS34202.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152931696|gb|ABS37195.1| sensor histidine kinase [Clostridium botulinum A str. Hall] Length = 472 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 232 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 291 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 292 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 351 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + R++ +++LN+ A P G++ + + S+K +G + Sbjct: 352 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFIKSDNVYISIKDSGIGISDEDKD 411 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 412 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 466 >gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] Length = 615 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 KNI S L+ S I H++ +P+ I +++LLD + +D+ ++L Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKL 405 Query: 53 IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103 I+ + + + + Y + V + + Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465 Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E+ ++ + KI + A GG + ++++DS+ +K G Sbjct: 466 TEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPS 525 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I + V + ++ L Sbjct: 526 DKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHNGKVTINSELGKGTEFIIKLP 584 >gi|148378267|ref|YP_001252808.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] gi|148287751|emb|CAL81817.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] Length = 465 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 225 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 284 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 285 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 344 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + R++ +++LN+ A P G++ + + S+K +G + Sbjct: 345 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFIKSDNVYISIKDSGIGISDEDKD 404 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 405 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 459 >gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase [Leptospirillum rubarum] Length = 454 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 50/220 (22%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFM-------- 67 + + H+I +P+ +I E L + G + + A + Sbjct: 222 FVANVSHEIRTPLTSIRGFAEALHDGGINDPKTAREFSGIILSHAERLGNIVSDLLHLSE 281 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + S T + +L Sbjct: 282 LETGKAVMRYGSVSLSRQIAHIRDVYADHARKKGIRFTVQLPEETLTYETDEGKMDLVLG 341 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P GG+V + +F ++ +G E +I + Sbjct: 342 NLVDNALKYTPEGGEVFFGGWKEGDAIVFEVRDSGVGIPRTEV-DRIFERFYRVDRARSR 400 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + Sbjct: 401 EMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFFVRVP 440 >gi|29833283|ref|NP_827917.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29610405|dbj|BAC74452.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 387 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 52/240 (21%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 140 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKKLMLETVDAD 199 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G Q R + Sbjct: 200 ANRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQPADRFLLRIEQPL 259 Query: 109 IDLSRERA---KILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKIN 154 L + ++L NL A + T + ++ Sbjct: 260 PALWADPDKIDQVLSNLLENAVRHGEGTVTIDVTPSASPRERTDDEGTAHAATSVTVSDE 319 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G S + Y V + + + L Sbjct: 320 GPGIPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGGITVGRAPGGGAEFRFTLP 379 >gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1431 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 57/217 (26%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70 + + H++ SP+ I LL +++ + + Sbjct: 1068 AVLSHELRSPLNPILGWSRLLQNGKLDEAKAKQAVNIIERNAKLQVELIEDLLDISRILQ 1127 Query: 71 ------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNLF 123 + G + ++ + ++ V + S +++ NL Sbjct: 1128 GKLSLTSSPINLASVIKGAIETVRLAAEANSIRIEVNLDGEIGLVSGDSTRLQQVMWNLL 1187 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178 A P GG V I ++ N+ S+ G + + D Sbjct: 1188 SNAVKFTPTGGLVEIRLEQVGNQAQISVSDTGKGISPDFIPYVFDYFRQADSATTRKFGG 1247 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + + E + + L Sbjct: 1248 LGLGLAIVRHLVELHGGTIHAESQGEGMGATFTLKLP 1284 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 61/236 (25%), Gaps = 26/236 (11%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 + L L S + H+ +P+ + + LE LL + E Q + L Sbjct: 315 EEERKRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLTADDLSQEQRQEMTLIH 374 Query: 58 MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + D ++ + I Sbjct: 375 RNGLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQFSVTCE 434 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEK 163 +L ++ + + ++ + + +++ ++ G E Sbjct: 435 PLPELVYVDRQMWEKIILNLLSNAFKFTFSGAIALTLRQVQHQVEITVTDTGIGIPQAEL 494 Query: 164 ---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G T + I V L + ++ + ++ + + Sbjct: 495 PHLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFTITVP 550 >gi|152974826|ref|YP_001374343.1| integral membrane sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023578|gb|ABS21348.1| integral membrane sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 459 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL------- 69 + + H++ +P+ I E + + G +++ MQLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGKQEKFMQLIHKEAGRMQRLVHDLLDLAQLEGE 303 Query: 70 ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + + + + V+ +++ + ++L N+ Sbjct: 304 HFPLQKQPIVFAQLIEDVVETYEWKCIEKQVEISMELDPDIIVMIDEDRMQQVLHNILDN 363 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A GK+T+ +Q K + + G E Q+ + Sbjct: 364 AIRYTNEKGKITVQLQKLKKDCQLKIMDTGIGI-EREHVEQLGERFYRVDKARSRQHGGT 422 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + L+ Sbjct: 423 GLGLAIVKQIVHIHDGKWKIESEKGKGTTVMIQLQ 457 >gi|75762776|ref|ZP_00742603.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489732|gb|EAO53121.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 408 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 M + + + + + I H+I +P+ A+ ++ + + ++ Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIER 243 Query: 60 AIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + + + D L+ + + + V +QV Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 303 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 363 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 406 >gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 589 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 58/225 (25%), Gaps = 23/225 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66 + S + H++ +PI I +E L + + +++I + + + Sbjct: 363 EQIRTEFVSNVTHELKTPITPIRGFIETLKNGAMNNPVVAERFLEIIDIEAERLHELIND 422 Query: 67 M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + Q I + V Sbjct: 423 ILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLMKANINRM 482 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 ++++NL + G V++ + + S+K G +I + Sbjct: 483 KQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIP-RIFERFYRVD 541 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + + Sbjct: 542 KGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586 >gi|323976120|gb|EGB71213.1| phosphate regulon sensor kinase PhoR [Escherichia coli TW10509] Length = 431 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ + LE++DE ++ + + + L ++ Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLQGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268 Query: 72 GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 T ++ + + + +V+E ++ + + + NL Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNDLKVSGNEDQLRSAISNLVYN 328 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+ Q + FS++ NG PE ++ + Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ RL E S ++ Sbjct: 388 GLGLAIVKHAVNHHESRLHIESTVGKGTRFSFVIP 422 >gi|315645639|ref|ZP_07898763.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315279117|gb|EFU42427.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 621 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 60/223 (26%), Gaps = 10/223 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 M N M++++ L + + H++ +P+ L+LL E E + L + Sbjct: 396 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLTGKAEAAEREYLDLALVELD 455 Query: 59 SAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 A + + + I + V + Sbjct: 456 RASGIITDFLTFAKPEFGKDTLLQISEEFKHIEGILAPLAHLQGGRITVDIPEDITIRGN 515 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 S + + +N+ + +L G V I +N+ + NG + ++ + Sbjct: 516 SSKFKQAFINIIKNSIEALGEEGVVHIRCYRQQNQVFIHVVDNGEGM-GADVIARLGEPY 574 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 575 FSNKTKGTGLGLMVTFRIIEAMDGDIFFTSRKGVGTDAIITLP 617 >gi|313891467|ref|ZP_07825083.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Dialister microaerophilus UPII 345-E] gi|313120242|gb|EFR43418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Dialister microaerophilus UPII 345-E] Length = 650 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 15/225 (6%), Positives = 56/225 (24%), Gaps = 21/225 (9%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65 + + + + H++ +P+ I E++ + I S + + Sbjct: 343 AEKMRREFSANVSHELKTPLTTISGFAEMIAKGMCKDTEDIKNFSNKIHQESRRMLSLID 402 Query: 66 FMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + + + S+ + + A K ++++ E + + A + Sbjct: 403 TIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEPVYMYGNAALL 462 Query: 119 LLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN 171 + ++ + + ++ G F + Sbjct: 463 SELFMNLLDNAVKYNVKGGNITVHIKRLKEKLMKITISDTGVGIPEEKQNRVFERFFRAE 522 Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ I+ + L Sbjct: 523 ESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVIVELP 567 >gi|307252561|ref|ZP_07534456.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859966|gb|EFM91984.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 586 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++L + I H++ +P+ I +L E + ++ + ++ ++SA+ Sbjct: 86 SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 145 Query: 76 SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + L ++ I + ++IL Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173 NL A P GG + +SV+ N FSLK G E+ Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L + ++ Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306 >gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 769 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 52/232 (22%), Gaps = 19/232 (8%) Query: 1 MAKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 M + + S L + + + H+I +P+ AI LL + +E + + Sbjct: 533 MEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQTNPSEETKEFCEIIE 592 Query: 58 MSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + L+ M + L Q Sbjct: 593 TNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKGGVTLYCEIPE 652 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ N A +G + F +K G Sbjct: 653 QDCVIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNL 711 Query: 164 FTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + ++ E + + Sbjct: 712 PHVFERFAKFDSFIQGTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763 >gi|295102318|emb|CBK99863.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Faecalibacterium prausnitzii L2-6] Length = 358 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 61/235 (25%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM--DLVALLCSRICHDIISPIGAIHNS----------------LELLDEV 43 K + S + A L + HD+ +P+ +I+ + ++LL E Sbjct: 110 KKQEQLRMESETEKMRANLLRAVSHDLRTPLTSIYGACSTVIDNYDSLGREQKIKLLSEA 169 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + +S ++ L+ + + Sbjct: 170 CADAQWLNRMVENLLSVTRIDADGVAIQKTPTVLEELVDTVLVRFQKLHPGVPVEVKLPD 229 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 S ++L NL A ++T+ V +F + NG Sbjct: 230 DFIVIPMDSMLIQQVLTNLLENAVLHAKGMTRLTLRVFTLGQRAVFEVIDNGCGIPKERL 289 Query: 164 FTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 T + I + + + E + L Sbjct: 290 KTLFTGTTLTQDTSSGGKHGMGIGLSVCAAIIKAHGGEIKAESTPGEGTTIRFWL 344 >gi|291537898|emb|CBL11009.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4] Length = 478 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67 S + HD SP+ +I +E + + ++D+ + +I + K + Sbjct: 252 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLLELNKF 311 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121 S D + Q E + T + ++L N Sbjct: 312 GSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYN 371 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177 L A +TI + + S+K G + + + ++ D Sbjct: 372 LIDNALKFSLANSAITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDK 431 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 432 KGTGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 469 >gi|317050581|ref|YP_004111697.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945665|gb|ADU65141.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 483 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 18/228 (7%), Positives = 64/228 (28%), Gaps = 16/228 (7%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57 + + L + L A+ L + + H++ +P+ I + L + + + ++ Sbjct: 248 EQRLQQRLRQTEKLAAIGQLAAGVAHELGTPLSVIDGKAQRALRRQDMCEHGREALQQVR 307 Query: 58 MSAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 F + + + + + + R+Q+ Sbjct: 308 HEVQRMEHIVRQLLDFSTNSMHCRNTSAARLAQSAASALADRQKRSAVRLQLRGESTAPL 367 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ L + ++ + + + F+++ +G +I Sbjct: 368 FRADPIRLEQVLVNLLENAMEAAPGGEVHLAWEVCSHRLCFTVEDSGPGVPES-ISHRIF 426 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + E+ + + +L Sbjct: 427 EPFFTTWPVGQGTGLGLAVVHGIIEEHGGTIEVGRSALGGALFQVVLP 474 >gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 941 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 56/233 (24%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60 AK + + + + H++ +P+ I ++L + +E I + S Sbjct: 471 AKEHADAANQAK--SDFLAHMSHELRTPLNGILGYAQILRRDKNLEQRQADGIAVIQRSG 528 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104 L + + L + ++E FI + Sbjct: 529 EHLLAIINDILDMAKIEAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGL 588 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++LLNL A G F ++ G + Sbjct: 589 PAAVRVDEKRLRQVLLNLLSNAIKFTETGSVCLRVDWTPPTRLRFEVQDTGIGIEEAHRE 648 Query: 165 TQIVDG----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 T + + + L + E + L Sbjct: 649 TIFRPFEQVSDARHRVGGTGLGLAISRQLVRLMGGEIHVESRRGGGSIFRFEL 701 >gi|300771713|ref|ZP_07081588.1| phosphate regulon sensor histidine kinase protein PhoR [Sphingobacterium spiritivorum ATCC 33861] gi|300761702|gb|EFK58523.1| phosphate regulon sensor histidine kinase protein PhoR [Sphingobacterium spiritivorum ATCC 33861] Length = 343 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 69/238 (28%), Gaps = 24/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 I S S I H+ +P+ AI +E L ++ + + Sbjct: 103 KSEIDKLRSQEKFRREFLSNISHEFKTPLFAIQGYIETLQDGLIEEDPEMAKGFLDKASK 162 Query: 56 SSMSAIIRLKFMRLAF-----GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + +++ I++ IE+ + ++ ++ Sbjct: 163 NLDRLSYLIHDLDEISKLESGRISLNIEKFDLSELIKETIENLDDKARSQKIDIVFKQKY 222 Query: 111 LS--------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 + ++ ++L NL + GG I + + + + +G Sbjct: 223 QNVTFVKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIEEKN 282 Query: 161 -PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + I + V + ++ + + LEK Sbjct: 283 LPRVFERFYRTDKSRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEK 340 >gi|269838216|ref|YP_003320444.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787479|gb|ACZ39622.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 538 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 64/251 (25%), Gaps = 39/251 (15%) Query: 1 MAKNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLE--LLDEVGI 45 MA + + +L A L + + H++ +P+ + LE L Sbjct: 277 MAAELERAMR--ELAAERDTVAHLLQSQRELVAAVSHELRTPVATLRGYLESALAHWNEE 334 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ +L+ + V++ +E V + + Sbjct: 335 PPPTLRADLAIMARETEQLQRLIDDLFTLSRVEAGQLPLRLEGVDVGTVLRRCAAAAAGL 394 Query: 106 GEK-----------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + +I+ NL A P GG V + + + + Sbjct: 395 AWERSRVEVLVEVAPDLPPAHADAARLEQIVRNLLTNAVRHTPPGGLVLLGAERDGDAIV 454 Query: 149 FSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIID 203 + +G + + + G + V L + E Sbjct: 455 VQVSDSGEGIVPEDLPRIWERFYRGASARDDARGGSGLGLALVKELTEAMGGSVAVESTL 514 Query: 204 DHNVVLSALLE 214 + L Sbjct: 515 GQGSRFTVRLP 525 >gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1364 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I +++ ++ + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LEK Sbjct: 866 FVITLEK 872 >gi|170744480|ref|YP_001773135.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168198754|gb|ACA20701.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 688 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 76/238 (31%), Gaps = 26/238 (10%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50 K + +L + L A+ L + HD + + + +L+LL + + Sbjct: 304 RKEMELSLVHASKLEAVGRLTGGVAHDFNNMLSIVIGNLDLLQKSLVADEKAHQRVQNAI 363 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + L R + +D + + Q++ + V + Sbjct: 364 DGAQRCAELTSRLLAVSRRSPLQPAPLDLGSFMPGLVQLLRRTLGERIGVTLDLGDAPPA 423 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNE---------NIFSLKINGNLA 158 +S +R+++ L A ++P GG ++I+V+ + + S+ G Sbjct: 424 VSVDRSQLEAALINLAVNARDAMPEGGHLSIAVRRAGEADRAGRAADAVLISVADTGTGM 483 Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + V ++ + E + + L Sbjct: 484 PAS-VLARVFEPFFTTKAEGKGTGLGLSMVHGFLQQSGGHIDVESVPGQGTTFTMSLP 540 >gi|163747897|ref|ZP_02155231.1| Osmosensitive K+ channel histidine kinase [Oceanibulbus indolifex HEL-45] gi|161378833|gb|EDQ03268.1| Osmosensitive K+ channel histidine kinase [Oceanibulbus indolifex HEL-45] Length = 523 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------------- 47 + + L + L S + HD+ +P+ +I + L E G Sbjct: 284 EAARLATETEKLRSALLSSVSHDLRTPLVSIIGAASTLAEGGDRYTEPMRQDLAETIREE 343 Query: 48 -EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 E + + + + +IG Sbjct: 344 GERLDRYVQNLLDMTRLSHGALRPRCVASDLLEIIGNARRRLRSNLAPYKIVLSLPDSMP 403 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L+N+ A P ++ +S ++ G + Sbjct: 404 LIDVDPILIEQLLVNVLDNAAKYAPDNSEILLSGHAESTWLKLAISDQGPGIPAQARSDV 463 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPE--IIDDHNVVLSALLE 214 + D + + + + + D+ + L Sbjct: 464 FEMFYRVTAGDTQRAGTGLGLAIARGIVDAHGGDIYVQATNPDESGTTIVFRLP 517 >gi|154505268|ref|ZP_02042006.1| hypothetical protein RUMGNA_02782 [Ruminococcus gnavus ATCC 29149] gi|153794466|gb|EDN76886.1| hypothetical protein RUMGNA_02782 [Ruminococcus gnavus ATCC 29149] Length = 353 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + N ++ L S I HD+ +PI AI +E + + E M + + Sbjct: 107 LKANAEEKVAYDKENKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTIYN 166 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------------VDKRVQV 102 + + + +D+ + + R + Sbjct: 167 KANEMDLLINELTFYSKIDTNRIPYNFTTISAKQYFGDCAEDLFMELEAKGVQFRYRNYL 226 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 + I + +++ N+ + + + +D + L NG Sbjct: 227 ETDSKVIVDPEQLRRVISNIVGNSVKYMDKSDPSITMDLKDVGDFVQIELGDNGKGIAAK 286 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + E+ ++ + + ++ K Sbjct: 287 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSEEGVGTTMYFVIRK 345 >gi|15804683|ref|NP_290724.1| putative histidine kinase [Escherichia coli O157:H7 EDL933] gi|15834328|ref|NP_313101.1| histidine protein kinase [Escherichia coli O157:H7 str. Sakai] gi|168748055|ref|ZP_02773077.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4113] gi|168755270|ref|ZP_02780277.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4401] gi|168760949|ref|ZP_02785956.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4501] gi|168766359|ref|ZP_02791366.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4486] gi|168774458|ref|ZP_02799465.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4196] gi|168780512|ref|ZP_02805519.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4076] gi|195935879|ref|ZP_03081261.1| putative histidine protein kinase [Escherichia coli O157:H7 str. EC4024] gi|208806652|ref|ZP_03248989.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208811940|ref|ZP_03253269.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208819744|ref|ZP_03260064.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209400726|ref|YP_002273636.1| hypothetical protein ECH74115_5603 [Escherichia coli O157:H7 str. EC4115] gi|217324536|ref|ZP_03440620.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254796113|ref|YP_003080950.1| putative histidine kinase [Escherichia coli O157:H7 str. TW14359] gi|12519054|gb|AAG59289.1|AE005642_8 putative histidine kinase [Escherichia coli O157:H7 str. EDL933] gi|13364551|dbj|BAB38497.1| putative histidine protein kinase [Escherichia coli O157:H7 str. Sakai] gi|187769930|gb|EDU33774.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4196] gi|188017420|gb|EDU55542.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4113] gi|189001820|gb|EDU70806.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4076] gi|189357544|gb|EDU75963.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4401] gi|189363911|gb|EDU82330.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4486] gi|189368536|gb|EDU86952.1| integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. EC4501] gi|208726453|gb|EDZ76054.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208733217|gb|EDZ81904.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208739867|gb|EDZ87549.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209162126|gb|ACI39559.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|217320757|gb|EEC29181.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254595513|gb|ACT74874.1| putative histidine kinase [Escherichia coli O157:H7 str. TW14359] gi|320190778|gb|EFW65428.1| Putative histidine kinase [Escherichia coli O157:H7 str. EC1212] gi|326341857|gb|EGD65640.1| Putative histidine kinase [Escherichia coli O157:H7 str. 1125] gi|326346568|gb|EGD70302.1| Putative histidine kinase [Escherichia coli O157:H7 str. 1044] Length = 756 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 71/232 (30%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 389 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 448 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 449 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 508 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G + Sbjct: 509 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGCGM-SQAVKS 567 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 568 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 619 >gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1119 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 61/238 (25%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + H+I SP+ AI +ELL + + + ++ + Sbjct: 484 LQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKDQRIHANIAREAG 543 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------------QVSW 104 L + ++ + L E + +A ++ + Sbjct: 544 SALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFEKGLELVSFVNRNV 603 Query: 105 TGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A ++ + + +G Sbjct: 604 PRTVVGDQQRLRQVLHNLVDNAIKFTASGTITVEMWIPDNHQTEVQLYCRVTDSGIGI-S 662 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E +++ + + L + + + Sbjct: 663 AEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIELQSELGQGSRFTFY 720 >gi|328543926|ref|YP_004304035.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326413670|gb|ADZ70733.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 379 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 30/242 (12%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51 MA+ I L+S L + + H+I +P+ I + +LL+ + + +M Sbjct: 126 MAEKIDRQLTSRGAARTVTGLAAMLAHEIKNPLSGIRGAAQLLEQSASEEDRALTRLIMD 185 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 F V+ + L ++++ + A KR+ + + Sbjct: 186 EADRIVKLVDRMEVFSDERPIEREPVNIHVVLDHVKRLADSGFARGKRIVEDYDPSLPPV 245 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------------------ENIFSLK 152 R +++ + + G F ++ Sbjct: 246 HANRDQLIQVFLNLVKNASEAIGDDPDGEIRITTAFRPGVRLSVPGTTEKVSLPLEFCVR 305 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 NG + + + + + + + V + ++ + + L Sbjct: 306 DNGPGV-PEDLLPHLFEPFITTKPNGSGLGLALVAKIIGDHGGVIECDSQPRK-TTFRIL 363 Query: 213 LE 214 + Sbjct: 364 MP 365 >gi|323965349|gb|EGB60807.1| phosphate regulon sensor kinase PhoR [Escherichia coli M863] gi|327254716|gb|EGE66332.1| phosphate regulon sensor kinase PhoR [Escherichia coli STEC_7v] Length = 431 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ + LE++DE ++ + + + L ++ Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLQGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268 Query: 72 GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 T ++ + + + +V+E ++ + + + NL Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQQRQTFTFEIDNDLKVSGNEDQLRSAISNLVYN 328 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+ Q + FS++ NG PE ++ + Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ RL E S ++ Sbjct: 388 GLGLAIVKHAVNHHESRLHIESTVGKGTRFSFVIP 422 >gi|315122102|ref|YP_004062591.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495504|gb|ADR52103.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 794 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 79/249 (31%), Gaps = 36/249 (14%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56 K + + + L A+ L I HD + + AI S + LL + L+ + Sbjct: 395 QKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIK 454 Query: 57 SMSAII------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + L F R ++ + ++ +I+ I+ +V++ E+ Sbjct: 455 HNANRAAILVRQLLAFSRKQTMCLVVLNLTEVISNLRMMIQKLISEPPQVKLHVDYERDL 514 Query: 111 LSR-----ERAKILLNLFMVAHASLP-----------------RGGKVTISVQDSKNENI 148 + ++L+NL + AH ++ S K+ + Sbjct: 515 WDVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTIRTRNIPSTEIHSFNYSDLPKKDMVL 574 Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 ++ G + +I + + + V + ++ +LPE Sbjct: 575 VEVEDTGIGI-SSDIMEKIFEPFFTTKEVGKGTGLGLSVVYGIIRQSGGYILPESEVGKG 633 Query: 207 VVLSALLEK 215 + L + Sbjct: 634 TIFRIFLPR 642 >gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 474 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 54/231 (23%), Gaps = 21/231 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57 + S L + + + H+I +P+ AI LL I + S Sbjct: 222 LRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTSEDIPFSEAEKQEYSRLIT 281 Query: 58 ---MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + M FG L + +++ + Sbjct: 282 SNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIYQAQRLCMPEGVRLRLDMPQ 341 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE 162 + + +++ NL A G + + G E Sbjct: 342 ADTPIVTDASRLKQVVNNLINNAAKFTDDGSITFGFRSPQGCEQVELFVHDTGKGI-AQE 400 Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 +I + ++ + + + + E + Sbjct: 401 HLDRIFERFYKADSFVKGVGLGLSICRTITEYLGGAISVESESGKGTRFTI 451 >gi|294055461|ref|YP_003549119.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614794|gb|ADE54949.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 760 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 78/238 (32%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + ++ + + ++ L I HD + + A+ ++ + L E ++ Sbjct: 371 LKQHEEELFMAEKMQSISQLAGGIAHDFNNMLTAVLGNISVVRMSLGSEHEEANRLESAE 430 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ A + + V + + + F+ V+ + + + Sbjct: 431 KAALQARTLTQQLLSFSKGGAPVIEATTIDQLVEDCAQFLLRGSNVRCEVEKDAELWAVD 490 Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNL 157 +++ NL + A+ ++P GG + + +++ + ++ G Sbjct: 491 ADKGQVGQVVNNLIINANQAMPDGGVIRLRLENASVRSNDITSLERGDYVCIAVADEGTG 550 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E +I D + D + + + +K +L E + L K Sbjct: 551 I-PAENLNRIFDPYFTTKKDGNGLGLASCYSIIRNHKGVILVESVVGEGTEFKVYLPK 607 >gi|317151881|ref|YP_004119929.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942132|gb|ADU61183.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 670 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/244 (8%), Positives = 62/244 (25%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIR- 54 M + + + + +L + + + H+I P+ AI + L+ E + + Sbjct: 418 MIEKDAQLIQASKMKSLGEMSAGVAHEINQPLNAIKMGSDFLCLMGEENADVPKEHFMEV 477 Query: 55 -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101 + A + +R + ++ + L + + + + Sbjct: 478 VREISIQVDRAAEIINTLRSFGRKSDFMEERVDLNQPVRAVLSMLRRQFELDNISFDLEL 537 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------KNENIFSLK 152 + S +++ NL A ++ D ++ Sbjct: 538 TEGLAPVMAHSNRLQQVVFNLVANARDAINDKSSPHDEGSDRRISIRSGAEGASVFIEVE 597 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ E +I + + + + + + V Sbjct: 598 DTGSGI-DEEDREKIFEPFFTTKEAGQGMGLGLAITYGIVKDYGGDIRIRSEKGKGSVFR 656 Query: 211 ALLE 214 Sbjct: 657 MQFP 660 >gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1599 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/248 (10%), Positives = 63/248 (25%), Gaps = 34/248 (13%) Query: 1 MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + K + + + + + + H+I +P+ I S+E+L + +++ Sbjct: 1034 LEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEMLASEISSENGRRIM 1093 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-- 111 ++ SA + + + + L E V+ + + + + K Sbjct: 1094 DMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQAENKNVRLS 1153 Query: 112 --------------SRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNENIFSL 151 + +IL NL A G SK F + Sbjct: 1154 KSLDPGVQDNLLGDASRLEQILRNLVGNAVKFTSHGQVTLRARPADSQDGSSKQVVRFEV 1213 Query: 152 KINGNLARFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + G + + + L + E Sbjct: 1214 QDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNINVESAPGEG 1273 Query: 207 VVLSALLE 214 A + Sbjct: 1274 STFVAEIP 1281 >gi|254444992|ref|ZP_05058468.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198259300|gb|EDY83608.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 777 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 19/226 (8%), Positives = 53/226 (23%), Gaps = 21/226 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 + L + L + + + H++ +P+ I ++L + + +L + Sbjct: 394 LERALEASRLKSEFIATMSHELRTPMNGILGMADILLLTELSESQKDSAKLIKKCGQNLM 453 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEK 108 + ++ L I+ + + + Sbjct: 454 SIISDILDFSKIETRNFQLEVEPLEIQLIVNETLAFFRPKAESKGISLRCEIDEHCSDIF 513 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 S+ ++L NL A G + + ++ G + Sbjct: 514 YGDSKRIRQVLTNLVGNAIKFTEEGYVRVRADFLGEGRMRIEVEDTGVGIDEVFQSKVFQ 573 Query: 169 -----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 DG+ + L + + Sbjct: 574 AFTQEDGSDSRRYGGTGLGLAITKQLVELMGGLIDFDSQVGVGSRF 619 >gi|192289948|ref|YP_001990553.1| ATP-binding region ATPase domain protein [Rhodopseudomonas palustris TIE-1] gi|192283697|gb|ACF00078.1| ATP-binding region ATPase domain protein [Rhodopseudomonas palustris TIE-1] Length = 1710 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED----EVM 50 + + + + AL + I H+I PI +I E L+ + + + Sbjct: 1468 LREARAELGRTSQMTALGSFAASIVHEINQPIASILAQTEAALRWLNREQPDIAEVTQGL 1527 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQV 102 IR S +K +R + S I L ++ + + IA D V + Sbjct: 1528 TRIRNSGRRTADIVKSLRSLGKQAPATFSPICLEEVVEEVMRLIAEDLDAGSVQITVVLL 1587 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNL 157 + +++ NL A ++ + + S +++ +G Sbjct: 1588 DQRRRISADRVQLQQVIFNLVTNAIHAMAEMEESARRIVISTTEAGDGMVRLTIEDSGCG 1647 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + ++ + + Sbjct: 1648 M-SEEVRGRIFEPFFTTKTAGMGVGLAICRSIVELHRGTISVRSTPGQGSTFEIAIP 1703 >gi|18450332|ref|NP_569203.1| hypothetical protein pli0050 [Listeria innocua Clip11262] gi|16415833|emb|CAC42048.1| pli0050 [Listeria innocua Clip11262] Length = 888 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIRLSS 57 I + + L I HD+ +P+ +I + +L+E ++ + S Sbjct: 650 ISLRMQQEQVRTNLLRAISHDLRTPLTSISGNAGVLKANSHILEEKQKQNLYNDIYDDSI 709 Query: 58 MSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + +D +I + Sbjct: 710 WLINLVENLLSITRLDEGSSNINMQPDLIDEVISEALRHIDRKSIEYNISMEIQDEDLIV 769 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 S+ ++++N+ A P G K+ I + + +K NG E +I Sbjct: 770 NIDSQLIMQVIINIVDNAIKYTPPGSKICIVAKQDMDSVCVEIKDNGEGIPDKE-KDKIF 828 Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + Y + + ++ + + + +L Sbjct: 829 DMFYTANNINADGRRGLGLGLYLCMSIIQAHQGEMYVKDNIPKGAIFGLVLP 880 >gi|22297573|ref|NP_680820.1| adaptive-response sensory kinase [Thermosynechococcus elongatus BP-1] gi|54036427|sp|Q8DMT2|SASA_THEEB RecName: Full=Adaptive-response sensory-kinase sasA gi|22293750|dbj|BAC07582.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] Length = 380 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 65/241 (26%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + S + H++ +P+ A +LE L+ E+ QL Sbjct: 137 LRQERDRLAEQLQFKDRIISLLAHELRNPLTAGGIALETLESNLQEESSQQLPIEDIQRL 196 Query: 61 IIR----------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +++ + ++ + Sbjct: 197 FHHARSQTQTMGQLITDLLLAARGPQDKLQIMARQLDLRQLCQETVEDVRLNFERKKQHF 256 Query: 99 RVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGN 156 + + +R ++L+NL A P GGK+ + + ++ G Sbjct: 257 TTDIPLDLPLVYGDGDRIRQVLVNLLDNACKYTPEGGKIHLSAFHRMTQKVQVTVSDTGP 316 Query: 157 LARFPEKFTQIVDG---NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ + + + I+ + I + + ++ + L Sbjct: 317 GIPIEQQEKIFGETVRLDRDRAIEGYGIGLALCRQIIRMHYGQIWVDSQPGKGSCFHFTL 376 Query: 214 E 214 Sbjct: 377 P 377 >gi|329904912|ref|ZP_08273950.1| Osmosensitive K+ channel histidine kinase KdpD [Oxalobacteraceae bacterium IMCC9480] gi|327547808|gb|EGF32577.1| Osmosensitive K+ channel histidine kinase KdpD [Oxalobacteraceae bacterium IMCC9480] Length = 287 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 16/229 (6%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + S L L S + HD+ +P+ A+ E L + + L A+ Sbjct: 46 ARSALVQMESERLRNSLLSALSHDLRTPLTALVGLAEALVRSSLAEAPAALATALHREAL 105 Query: 62 IR----LKFMRLAFGYTGSVDSLIGLGDIEQVI------EDFIAVDKRVQVSWTGEKIDL 111 + + +A G+V + +E+V+ + + Sbjct: 106 RMSTLVVNLLDMARLEAGAVQLRLEWQSLEEVVGTALAACGNTLAQHHIVTDLPASLPLV 165 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165 + ++L NL A P G + IS + N+ ++ NG + F Sbjct: 166 RFDAVLIERVLCNLIENALKYTPPGSTIRISALPAGNKICLTVADNGPGFPAGQIGALFD 225 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G ES I + + + + D L Sbjct: 226 KFARGVNESAIPGVGLGLAICRAIIDAHGGSIEGATNADGGASFVITLP 274 >gi|319407199|emb|CBI80838.1| Sensor protein [Bartonella sp. 1-1C] Length = 850 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 62/243 (25%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 M ++ M V L I HD + + AI S + L + I+ + Sbjct: 461 MLEDKMIQNQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSFDPAYADLINIKNN 520 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 + A ++ + + ++ I + I + + Sbjct: 521 ANRAAALVQQLLAFSRKQTLRPKKVDFTELLSDIRNLILPLLGNNIQLKIIHGKDLWDVK 580 Query: 115 -----RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154 ++++NL + A ++ + K + ++ Sbjct: 581 VDQASFQRVIMNLVINARDAMLDGGIVTITTNNITKQQSAKFNYAGFVVGEYVQLTVSDT 640 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ + + + V + + + + + Sbjct: 641 GTGISAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSQEGEGTTFHIF 699 Query: 213 LEK 215 L + Sbjct: 700 LPR 702 >gi|313673210|ref|YP_004051321.1| integral membrane sensor signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939966|gb|ADR19158.1| integral membrane sensor signal transduction histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 616 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 64/225 (28%), Gaps = 12/225 (5%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSS 57 + L+ + + LL S I H++ +P+ +I ++L E + + I+ + Sbjct: 387 RQKKIELLNRLSSIGLLSSGISHELNTPLNSIILLCDILLEEAKKGKVNTDDINNIKNEA 446 Query: 58 MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + +K + + + L + + G + Sbjct: 447 KRCVSIIKNLKLLDPQNKIQTNEVISIKEVLERNIKYFNNIFKKLHVESDIKDGTILANR 506 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ N+F+ A + ++ + + E +K G I Sbjct: 507 VLINQVFFNIFLNAIEASDEECRIFVRSFEKDGEVWIVIKDYGRGMDEDTINN-IFVPFF 565 Query: 173 ESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + ++ ++ + K Sbjct: 566 TTKQPDKGMGLGLSLVYKIVSDHNGKIEVTSKKGEWTEFTLRFLK 610 >gi|295317727|gb|ADF98104.1| sensor histidine kinase [Clostridium botulinum F str. 230613] Length = 417 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 296 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + R++ +++LN+ A P G++ + + S+K +G + Sbjct: 297 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411 >gi|189466425|ref|ZP_03015210.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM 17393] gi|189434689|gb|EDV03674.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM 17393] Length = 628 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 15/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +L E E + IR+ + Sbjct: 395 LIQAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAETTDTPENHEYIRIIEDNN 454 Query: 61 IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + L+ + VD + +E + + + ++ +K Sbjct: 455 YLLLQLINDILDLSRIEAGLLDFCYTDVDVNSCIRKLEDTFRFRMPANVKCVTEFSMKKC 514 Query: 110 DLS---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++L N F A +G + F ++ G ++ T Sbjct: 515 YIHTEKNRLMQVLGNYFSNAIKYTNQGSITIGYYPPKNEKIRFYVRDTGCGISPDKQQTI 574 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++A + + + Sbjct: 575 FQRFVKLDNFKQGTGLGLSICQMIAEKMNATVGIHSEVNKGSEFWIEFP 623 >gi|254830992|ref|ZP_05235647.1| hypothetical protein Lmon1_06518 [Listeria monocytogenes 10403S] Length = 459 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 22/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S + + H++ SP+ ++ LL + ++ Sbjct: 228 MASELE---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + S+D L E V W+ + +L+ Sbjct: 285 TTRLSSLSKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADV 344 Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++ NL A P+GG + + + + ++ +G + Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDMTNVFVEVQDSGVGISKVDMTKI 404 Query: 164 FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + S + + + + + + + L K Sbjct: 405 FDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458 >gi|153940624|ref|YP_001389635.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] gi|152936520|gb|ABS42018.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] Length = 472 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 232 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 291 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 292 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 351 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + R++ +++LN+ A P G++ + + S+K +G + Sbjct: 352 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 411 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 412 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 466 >gi|86160642|ref|YP_467427.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777153|gb|ABC83990.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 613 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIR 54 + L + L AL L + + H++ +P+ AI L +L E++ + Sbjct: 375 LKTAQDQILRTRRLAALGSLGAGLAHELNNPMTAIVGYLAILKRELPAGSAHAEMIGRAQ 434 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV---------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + ++ +R S+ L E + Sbjct: 435 EQTARVARVVEDLRSFADQERSMQGRRFSLVGPVRAALALYEDRLRAAGIELTTRFDERL 494 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF 164 + + +++ +L A ++PRGG + +S + G Sbjct: 495 PDAQGDPVQIQQVVAHLVENAINAMPRGGSLEVSLGTVDGEALRLRIADTGKGIPVT-IR 553 Query: 165 TQIVDGNVEST-IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + R++ E + ++ LL Sbjct: 554 ERIFDPFFTTKEHPGRVGLGLSVSHSIVEAHHGRIVVESEEGAGAAITVLLP 605 >gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar to ArcB sensor in E. coli [Pseudoalteromonas haloplanktis TAC125] Length = 896 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 24/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57 + + + + + + + H++ +PI I L + + I + Sbjct: 513 LRQEKQKADEASQIKSQFLANMSHEVRTPINGIKGLHYLALQQNDWQQARTYIEQADGAL 572 Query: 58 ----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK 108 L F ++ G + + +G + + + + +++ + Sbjct: 573 GVLLRVLNDLLDFSKMEAGKLDLMQEPVDIGRLAEEVINLIQFEVSVKSLEIKLDYDKNT 632 Query: 109 IDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++LLNL A +G Q S+ G E Sbjct: 633 NLMINTDAIRLKQVLLNLLNNAVKFTAQGSITLKIWQSK-TMTYLSVSDTGIGI-SKEAQ 690 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L + + + L Sbjct: 691 KKLFRPFAQADNSTSRQYGGTGLGLSICKKLVELMGGAIDLKSTAGQGSTFTFSLP 746 >gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1286 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/250 (11%), Positives = 75/250 (30%), Gaps = 38/250 (15%) Query: 2 AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49 N +S+ +L + + H++ +P+ AI E L E + + Sbjct: 880 QSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINNKQFKA 939 Query: 50 MQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 ++ I SS + + + ++ T + + + + + + +V Sbjct: 940 LETIERSSSHLLDLINDILDVAKIEAGQIKLDCTTISVANLCESSLVFIKQQALQKRIQV 999 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFS 150 ++ DL + ++L+NL A P +++ + +N + Sbjct: 1000 EIKIPFNLPDLFVDERRIRQVLINLLNNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIA 1059 Query: 151 LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + G E ++ + + + V + + R+ Sbjct: 1060 VIDTGIGIM-QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSELG 1118 Query: 205 HNVVLSALLE 214 + L Sbjct: 1119 IGSCFTIELP 1128 >gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 955 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 64/230 (27%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +LL + + + +++ + + Sbjct: 569 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQADREEYMQIINTNN 628 Query: 61 IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + LK + + D + ++ + + V+ + Sbjct: 629 ELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDV 688 Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A P+G + + +K G +K Sbjct: 689 CLVKLDRNRVAQVMTNYVTNAIKYTPKGSIE-MGYEVMDTGIRLYVKDTGIGIPEEKKNK 747 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + A++ Sbjct: 748 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 797 >gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 1023 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 64/230 (27%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +LL + + + +++ + + Sbjct: 637 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQADREEYMQIINTNN 696 Query: 61 IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + LK + + D + ++ + + V+ + Sbjct: 697 ELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDV 756 Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A P+G + + +K G +K Sbjct: 757 CLVKLDRNRVAQVMTNYVTNAIKYTPKGSIE-MGYEVMDTGIRLYVKDTGIGIPEEKKNK 815 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + A++ Sbjct: 816 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 865 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/240 (8%), Positives = 61/240 (25%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + + + + + H+I +PI I L+LL + + + ++ S Sbjct: 758 LKKAKEQAEEASRVKSGFLASMSHEIRTPINGIMGMLQLLQTADLNADQASFVDMAVRSC 817 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 ++ + ++ + + ++ + + + Sbjct: 818 DRLVRLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPLSGSNGVVLDFTLDPAL 877 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLAR 159 + + +IL NL A G + F + G Sbjct: 878 PDRILGDAFRLQQILNNLVDNACKFTTSGRITVQAWNLTAVEPRTVRVFFEVSDTGIGIP 937 Query: 160 FPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + ++ D ++ + + L + + L Sbjct: 938 DEDLR-RLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGMSVTSEAGKGTTFAFSL 996 >gi|167828470|ref|ZP_02459941.1| two-component sensor kinase protein [Burkholderia pseudomallei 9] gi|226199125|ref|ZP_03794687.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|225928900|gb|EEH24925.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9] Length = 723 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRSKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 422 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/253 (9%), Positives = 65/253 (25%), Gaps = 40/253 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + I L + + + H++ +P+ +I E+L + + ++M Sbjct: 164 LERAIAHLRDVDQLKSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPLNEEQTEYANMIL 223 Query: 61 II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-----------EDFIAVDKRVQV 102 + + ++ G+V + + V+ + R Sbjct: 224 DRGEELLRLITQILEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPADRAHVNLVRDFA 283 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNEN 147 + + ++L+NL + R + ++ + Sbjct: 284 DDLPLMLVDPDKVLQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFEEDFFGEEVADAM 343 Query: 148 IFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI 201 S+ G + +I D + V L + + E Sbjct: 344 RVSVSDTGIGIPEDQL-ARIFDAFYQVDSSSTREHGGAGLGLSIVKKLIEAHGGEIWAES 402 Query: 202 IDDHNVVLSALLE 214 I L Sbjct: 403 IVGVGTTFHFTLP 415 >gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 793 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 59/237 (24%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 ++K S+ + + + H+I +P+ + + LL E ++ + + + S Sbjct: 272 LSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDLQAKQREYAEIIRSSG 331 Query: 61 IIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + ++ M V + E+ + + ++ + Sbjct: 332 ELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEV 391 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFP 161 + ++L NL A +G + + G Sbjct: 392 PDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSDTGIGI-PQ 450 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + ++ + V L + + V Sbjct: 451 DMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFT 507 >gi|32474484|ref|NP_867478.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32445022|emb|CAD75024.1| probable sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 304 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQL 52 A+ +L L + H+I +P+ IH +++LL E +E + + Sbjct: 71 AEMREARGQYEELA-ELAGSLAHEIKNPLSIIHMNIDLLSEDLMEIDSPSSRRCQNRVDM 129 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWT 105 +R L+ L D Q + D + + Sbjct: 130 VRNQCERMEGLLRDFLRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQDVELQRYLDPD 189 Query: 106 GEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 I L + + L+NL A ++P GG++ ++ L G Sbjct: 190 LPSIRLHSDALQSALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVL 249 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + R+ + S Sbjct: 250 -HMFEPFYSTKDGGSGLGLPTARKIIEAHGARISVQSETGRGTKFSLQFP 298 >gi|15613951|ref|NP_242254.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10174004|dbj|BAB05107.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 368 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 62/215 (28%), Gaps = 11/215 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-- 67 M+ V+ + + + H++ +P+ I L+L + I ++ Sbjct: 152 HQMEAVSHIAAGVAHELRNPLSVIKGFLQLSQLTDGFSKYYDTIMSELNRMNGIIEDFLS 211 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILLNL 122 ++ + L +I + V + + + +++LNL Sbjct: 212 VSRKKIERKAQSPKKIMDSLTEIIKSECLLHNVSFEIDLQPTSKMVYVNESMIKQVILNL 271 Query: 123 FMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 + + + ++E + +++ NG E Q+ + Sbjct: 272 LRNSIEAFGDAKIDRLFRVQAIPKEHEYVLTVEDNGKGM-TKEVLAQLGKPFFTTKDRGT 330 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + ++ E ++ L Sbjct: 331 GIGIPLCKKIIEDHNGTFQIESERYKGTKVTIRLP 365 >gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 781 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 27/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK +S + + + H+I +P+ I LL+ + DE + ++++ S+ Sbjct: 397 AKEEAERANSAK--SQFLANMSHEIRTPMNGIMGMTSLLEFSKLTDEQIDIVKMIETSSK 454 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L+ + + I L I + + + + + Sbjct: 455 HLLQIINDILDLSVMDVGKIELKPERINIFNLMNESRNLFTYLAENKGLKLEIIVDNNLP 514 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161 E I ++L NL A +G + + +FS+K G + Sbjct: 515 NEIILDKGRLMQVLSNLIGNAIKFTEKGKIQVSVDKVEDKENKVKLMFSVKDTGIGIKEE 574 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + E Sbjct: 575 DIPRLFNYFTQLDISASKKFQGTGLGLAISKNIVELMGGEISVESQYGKGSTFYFT 630 >gi|325122525|gb|ADY82048.1| sensory kinase (soluble) in two-component regulatory system [Acinetobacter calcoaceticus PHEA-2] Length = 369 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 28/238 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + L + H+I +P+ I + +LL + + + Sbjct: 126 SKEENLVQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDKSYAEFTDVIINEVDR 185 Query: 63 RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 G V+ L + +I + ++ + D++ +R + Sbjct: 186 LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKIIRDYDLSLPDVNADRDQ 245 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN---------------------ENIFSLKINGN 156 ++ + ++ ++ + D + ++ NG Sbjct: 246 LIQVMLNISVNAIQAITENKAFFIDHEPELILRTRIQRLVTINGVLNRSTVRVDIEDNGP 305 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + H++ + + + + S L Sbjct: 306 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TIFSLYLP 361 >gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.] Length = 1266 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 35/246 (14%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + K + ++ + + H+I +P+ I + ELL I D+ +R+ Sbjct: 502 LEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLSNEDISDKAKHYLRII 561 Query: 57 SMSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + SA L+ + L D + L ++ ++ V + Sbjct: 562 TTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLVNMFFHRTSKKFIELLVDI 621 Query: 103 SWTGEK--IDLSRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLK 152 + +IL+NL A + S + + + F +K Sbjct: 622 DPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGVKELENRSAESGEVKLRFFIK 681 Query: 153 INGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G E +I + + L + E + Sbjct: 682 DTGIGI-AHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGGEIRVESEPEKG 740 Query: 207 VVLSAL 212 S Sbjct: 741 STFSFT 746 >gi|301055499|ref|YP_003793710.1| transmembrane sensor histidine kinase [Bacillus anthracis CI] gi|300377668|gb|ADK06572.1| transmembrane sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 424 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|229098474|ref|ZP_04229417.1| hypothetical protein bcere0020_37050 [Bacillus cereus Rock3-29] gi|228684945|gb|EEL38880.1| hypothetical protein bcere0020_37050 [Bacillus cereus Rock3-29] Length = 424 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 19/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEEMKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAVQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|229104612|ref|ZP_04235275.1| hypothetical protein bcere0019_37550 [Bacillus cereus Rock3-28] gi|228678808|gb|EEL33022.1| hypothetical protein bcere0019_37550 [Bacillus cereus Rock3-28] Length = 424 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 19/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEEMKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAVQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|229117501|ref|ZP_04246874.1| hypothetical protein bcere0017_37760 [Bacillus cereus Rock1-3] gi|228665954|gb|EEL21423.1| hypothetical protein bcere0017_37760 [Bacillus cereus Rock1-3] Length = 424 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 19/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEEMKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAVQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|221234751|ref|YP_002517187.1| nitrogen regulation protein ntrB [Caulobacter crescentus NA1000] gi|220963923|gb|ACL95279.1| nitrogen regulation protein ntrB [Caulobacter crescentus NA1000] Length = 373 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 58/221 (26%), Gaps = 29/221 (13%) Query: 21 RICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + H+I +P+ I + +LL + + ++ F A Sbjct: 143 MLAHEIKNPLAGIRGAAQLLKTGASAVDQPLAQLIVDETDRIRRLVDRMEAFSEQAPTMR 202 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLP 131 V+ L + ++ + +A ++ S+ + + +I LNL A + Sbjct: 203 EPVNIHQVLDRVRALVANGVADGLTLKESYDPSLPPVWGDEDHLIQIFLNLMKNAAEAAH 262 Query: 132 RGGKVTISVQDSKNE------------------NIFSLKINGNLARFPEKFTQIVDGNVE 173 G + + NG + V Sbjct: 263 MRGDDRGVLSIHTAWRPGVRVRGADGKATSGAPIEVRVIDNGPGVPAT-LRDHLFQPFVT 321 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L + + E V LL Sbjct: 322 TKSNGTGLGLALVTKLVTAHGGLIDFESEPGR-TVFRVLLP 361 >gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10] gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10] Length = 508 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 80/238 (33%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 +A++ + + +L + + H++ +P+ +I +E + + + + + Sbjct: 262 LAESFNNMVEDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPPEKQRGYLTI 321 Query: 53 IRLSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS 103 +R + + + D + + + + +++ + Sbjct: 322 VRDETNRLNRLVNDLLDLARMESGELTLSMKPFDINELIRICVIKLETLITSKNLQIEAN 381 Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + + + ++ ++++NL A GK+ + +K + S+K NG Sbjct: 382 FDVDSMMVLADKDSIERVIINLLHNAVKFSNENGKIIVETAKNKEKVFISVKDNGIGIDS 441 Query: 161 PE---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + D + V + E+K +L E + L Sbjct: 442 DDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNILTEHKQDILLESDVGKGTKFTFTL 499 >gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 646 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 + + + ++ + + H++ +P+ AI ++L G + + + Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGII 396 Query: 57 SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + S L + VD + ++ S Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAP 456 Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R ++L+NL A PRGG+V + V+ + +G Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 516 Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D + + + + V LA + + E ++ L Sbjct: 517 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574 >gi|167769054|ref|ZP_02441107.1| hypothetical protein ANACOL_00377 [Anaerotruncus colihominis DSM 17241] gi|167668694|gb|EDS12824.1| hypothetical protein ANACOL_00377 [Anaerotruncus colihominis DSM 17241] Length = 901 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 59/233 (25%), Gaps = 23/233 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSA 60 L A L + HD+ +P+ I S +L + + +L Sbjct: 662 QAALQAQKEHLQANLLRAVSHDLRTPLTNISGSASILMQKECPLDDAAKERLYTGIYDDT 721 Query: 61 IIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + T L + D A + + + + Sbjct: 722 NWLISMTENLLAATHLEADKGALPMEPQLLEDIFQSAATQLDRRAREHNISIVLQDPMLM 781 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++++N+ A P G + +S + + S+ +G E + Sbjct: 782 ANINAKLILRVIINIMNNAIQYTPNGSHIVLSGERKGDMVEVSISDDGPGI-PDEAKKHL 840 Query: 168 VDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + ++ ++ V L Sbjct: 841 FDLFYTAEQGRSDCQRGLGLGLNLCRSIIAQHNGQITVSDNRPSGTVFRFTLP 893 >gi|167760790|ref|ZP_02432917.1| hypothetical protein CLOSCI_03175 [Clostridium scindens ATCC 35704] gi|167661677|gb|EDS05807.1| hypothetical protein CLOSCI_03175 [Clostridium scindens ATCC 35704] Length = 468 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 61/219 (27%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + + HD SP+ +I +E + + + ++ +++I + + + + Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAMTDGTIPPEMHEKYLKIILFETERLTDLTQDLLTLNEF 308 Query: 74 TGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRERAKILLN 121 + + + K++ + R+ ++L N Sbjct: 309 DTKNILLTKEVFDIHEMIKNVAAAFEGTCTQKKISIELIFATKYLNVTADKRKIQQVLYN 368 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177 L A VTI + ++ S+K G + + ++ D Sbjct: 369 LLDNAIKFSETDSTVTIETTERGDKIYTSVKDYGIGIPRNALNKIWERFYKTDLSRGKDK 428 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + L K Sbjct: 429 KGTGLGLAIVKEAIQAHGENINVVSTEGVGTEFIFSLPK 467 >gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1350 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/250 (10%), Positives = 55/250 (22%), Gaps = 38/250 (15%) Query: 2 AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELL-DEVGIEDEVMQL 52 + L A SR + H+I +P+ I +LL ++ + + + Sbjct: 838 RQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLNGILGYTDLLLEDATLGEGQRRQ 897 Query: 53 IRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + ++ V + IA+ Sbjct: 898 AERIQSAGAALLTIVNDILDFSKIEAGQVELDPRPFLLDALVDNTISVVRGFVGKKAIAI 957 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLK 152 V + ++LLNL A G FS+ Sbjct: 958 STVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTHAGSVTLSVSCLEPAGATAALRFSVT 1017 Query: 153 INGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G +K ++ + + L + E Sbjct: 1018 DTGIGI-PEDKRGRLFQRFSQLDSSIGRDFGGTGLGLAISKNLVELMGGTIDVESEVSKG 1076 Query: 207 VV--LSALLE 214 + L Sbjct: 1077 TTFWFTVTLP 1086 >gi|218783087|ref|YP_002434405.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218764471|gb|ACL06937.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 801 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 69/241 (28%), Gaps = 32/241 (13%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L + + A+ L + HD + + ++ EL +D G E + I ++ Sbjct: 416 EQMLLHAQKMKAIGTLAGGVAHDFNNILTSVRAYTELAQFRIDNQGAVQESLDQIMNATD 475 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDL 111 A +K + TG + LG + + + + W Sbjct: 476 RAKEMVKQILNFSRQTGEEKKPVQLGPVIKEAVTLLKAALPSTIDVVMALKEWECIIHAD 535 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----------------KNENIFSLKING 155 + + +I++NL A ++ + G + N ++ G Sbjct: 536 ATQVHQIIMNLGTNAAHAMVQSGGILHFSMIREEVDRKTAAKIPELKSGNYIKLRVQDTG 595 Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE I D + + V + ++ ++ + + Sbjct: 596 CGM-EPEVMKHIFDPYYTTRETGKGSGMGLAVVYGIVKQHGGAIVVKSKPGKGTLFDVYF 654 Query: 214 E 214 Sbjct: 655 P 655 >gi|111220169|ref|YP_710963.1| putative sensor histidine kinase [Frankia alni ACN14a] gi|111147701|emb|CAJ59358.1| Putative Sensor histidine kinase [Frankia alni ACN14a] Length = 648 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 20/218 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ AI EL M + S + + L Sbjct: 356 QFLADVSHELRTPLAAISGYAELTRRTREPVPPDVTYAMSRVESESARMTALVSDLLLLA 415 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKIDLSRERAKILLNL 122 DI +++ D ++ + ++L NL Sbjct: 416 RLDSGRPLEHEPVDISRMVVDAVSDAHVAAPDHRFALDLPEEPVTVTGDAARLHQVLANL 475 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTID 177 A A P G +VT S+ + +E ++ +G PE F + G+ Sbjct: 476 LANARAHTPPGTRVTASLAVTDDEVTVAIVDDGPGIPADLLPEVFERFARGDSSRSRAAG 535 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + V + ++ R+ L + Sbjct: 536 STGLGLAIVAAVVEAHQGRVEATSQPGR-TAFVVTLPR 572 >gi|16125984|ref|NP_420548.1| nitrogen regulation protein NR(II) [Caulobacter crescentus CB15] gi|13423160|gb|AAK23716.1| nitrogen regulation protein NR(II) [Caulobacter crescentus CB15] Length = 363 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 58/221 (26%), Gaps = 29/221 (13%) Query: 21 RICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + H+I +P+ I + +LL + + ++ F A Sbjct: 133 MLAHEIKNPLAGIRGAAQLLKTGASAVDQPLAQLIVDETDRIRRLVDRMEAFSEQAPTMR 192 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLP 131 V+ L + ++ + +A ++ S+ + + +I LNL A + Sbjct: 193 EPVNIHQVLDRVRALVANGVADGLTLKESYDPSLPPVWGDEDHLIQIFLNLMKNAAEAAH 252 Query: 132 RGGKVTISVQDSKNE------------------NIFSLKINGNLARFPEKFTQIVDGNVE 173 G + + NG + V Sbjct: 253 MRGDDRGVLSIHTAWRPGVRVRGADGKATSGAPIEVRVIDNGPGVPAT-LRDHLFQPFVT 311 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L + + E V LL Sbjct: 312 TKSNGTGLGLALVTKLVTAHGGLIDFESEPGR-TVFRVLLP 351 >gi|17227924|ref|NP_484472.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17129773|dbj|BAB72386.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 637 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEV 49 + + + +L A S +CH +P+ + S LL ++ Sbjct: 402 LTQALEQAKHLGELRASFLSMVCHQFRNPLNIVSFSNSLLKRYLNAQTEETIQPLLDQVQ 461 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + +L+ M + L A + VI +++ + Sbjct: 462 LSIQQLNQMLDDMLLFAKTEAAKLKFEPSRFEIVEFCNDVISQMQMAHFPNYINFISQTE 521 Query: 110 DLSRERAK-----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 L+ K IL NL A P G V + + + + IF +K +G + Sbjct: 522 YLTVWMDKNILDSILKNLIDNAIKYSPLGSMVELRLLGNNEKIIFQVKDDGIGISTLD-Q 580 Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + I + V L + ++ E + +L Sbjct: 581 KRLFEPFYRGKNVDNIPGTGLGLSIVKTLVDLHGGQVAVESKVGVGTTFTVVLP 634 >gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 914 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 69/237 (29%), Gaps = 27/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AKN + + + + H+I +P+ + + ELL++ + + + + + SA Sbjct: 382 AKNRAEEATRAK--SQFLANMSHEIRTPMNGVIGAAELLNDTRLNASQREYLTMITQSAD 439 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSWT 105 L + ++ + L + + D I + V + Sbjct: 440 ALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEKGIELACHVALDVP 499 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFP 161 ++++NL A RG V ++D + F++ G Sbjct: 500 DALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWLRFAVSDTGPGIAAD 559 Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 ++ D + + L RL + V + Sbjct: 560 KRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRGSVFHFTI 616 >gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 482 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 65/244 (26%), Gaps = 32/244 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53 +++ L + + H+I +P+ + E + + + + Sbjct: 231 RDVTEEFKLEKLRRDFVANVSHEIRTPLSMLQGYSEAILDGFADSPEERDELVQVIHDES 290 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEK 108 L R+ G+T + + + + D R+ + Sbjct: 291 VRMGRLVKDLLDLARMEAGHTELKLMPCDIDNLVKRVHRKFLTFAKERDIRLVCELPEQH 350 Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGN 156 + + ++L NL A P G +T+S + +K G Sbjct: 351 LFMESADEDRLEQVLTNLLDNALRHTPAGAVITVSGKMRAEELGRSEPAYVELQIKDEGE 410 Query: 157 LARFPE---KFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + F + + + V + ++ + + + + Sbjct: 411 GIPAEDLPYIFERFYKADKSRKRGSSSGTGLGLAIVKNIVESHEGHIHVDSLVGKGTTFT 470 Query: 211 ALLE 214 LL Sbjct: 471 LLLP 474 >gi|269967809|ref|ZP_06181855.1| sensor protein TorS [Vibrio alginolyticus 40B] gi|269827585|gb|EEZ81873.1| sensor protein TorS [Vibrio alginolyticus 40B] Length = 895 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 L + D + D Q++ ++ + Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVS 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A G + +++ +F + G + Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQ 636 Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + + L + + + + Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIP 691 >gi|256830476|ref|YP_003159204.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579652|gb|ACU90788.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 564 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 64/218 (29%), Gaps = 14/218 (6%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIR 63 + L A+ + + + H+I +P+ A+ + L E+ + + + Sbjct: 340 RNEKLAAIGRMAAGVAHEIRNPLSALRGFAQFFAKKLAGRDPEELYARTMVQEADRLNRV 399 Query: 64 LKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + + + ++ + + T + Sbjct: 400 ITDLLFLARPRQLSFAQVPLAEIFREVHTLLSMDAGARNGRLEHWTDTETVQADRDALKQ 459 Query: 118 ILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++NL M + +LP + + + + ++ NG E+ + + + Sbjct: 460 AVINLLMNSVEALPGEEGLIELWAEGNDDGTWIRVRDNGAGMSPEEREHAL-EPFFTTRD 518 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + E+ + E V+S Sbjct: 519 KGTGLGLAIVHTIMQEHGGLIQIETPTAGGTVVSLFFP 556 >gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 508 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 55/219 (25%), Gaps = 23/219 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63 + + + H+I +P+ + +LL + + M+ + L + S Sbjct: 137 SRFLAMMSHEIRTPMNGVIGFTQLLRDTPLNPRQMEYVDLITRSGQSLLVIIDDILDYSK 196 Query: 64 ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + A + + I +D + I + +I+ Sbjct: 197 VSAGHLQLERAPCELRRLIEQHIQLLHTGARQKNITIDLHIDPLVPSLIIGDAVRIGQIV 256 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173 NL A GG V D + G PE +I + Sbjct: 257 SNLVSNAIKFTHHGGVHIHLVPDGPRCLALHVTDTGIGI-PPEAHRRIFEPFSQADGSTT 315 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + LL L H +A Sbjct: 316 RRYGGTGLGLPITRLLCTLMGGTLTLSSQPGHGSTFTAT 354 >gi|254453386|ref|ZP_05066823.1| periplasmic sensor signal transduction histidine kinase [Octadecabacter antarcticus 238] gi|198267792|gb|EDY92062.1| periplasmic sensor signal transduction histidine kinase [Octadecabacter antarcticus 238] Length = 567 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 22/224 (9%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQ------LIRLSS 57 + L AL + + + H++ P+ A+ L L+ ++ V+ LI + Sbjct: 333 QTSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLIARERPDEAVVAVQRIDGLIERMA 392 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSR 113 + R VD + ++E + + + Sbjct: 393 AITKQLKSYARKGKDSLEPVDIKDAVLSSLSMMEPQLRQRQVIITRTLPDQPVMIYGDRM 452 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++++NL A + + ++ + + S++ NG+ E ++ + Sbjct: 453 RLEQVIINLLRNALDATKMALEPSVEILLVQGDVARLSVRDNGSGI---EDLDELFEPFY 509 Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + ++ RL D V L Sbjct: 510 TTKQAGDGTGLGLAISSGIVNDFGGRLTARNSDKGGAVFEVELP 553 >gi|91227910|ref|ZP_01262049.1| sensor protein TorS [Vibrio alginolyticus 12G01] gi|91188319|gb|EAS74616.1| sensor protein TorS [Vibrio alginolyticus 12G01] Length = 987 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 L + D + D Q++ ++ + Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVS 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A G + +++ +F + G + Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQ 636 Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + + L + + + + Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIP 691 >gi|86156931|ref|YP_463716.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773442|gb|ABC80279.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 414 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 61/205 (29%), Gaps = 9/205 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIR-LKFMRLA 70 + + + H+I +P+G I + EL+ + E + + F+ LA Sbjct: 207 MAAMVAHEIRNPLGVIRGAAELVRARSGAALAPRDVEALGDVLGEVERLRRLTDDFLDLA 266 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS- 129 + + + V+V+ + + + + A++ L + + Sbjct: 267 RDPAIAAEPADLAELAAEAARALGRAHPAVEVALSVPPLRVRADAARVRQVLANLLENAA 326 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 L +V ++ + ++ +G + ++ + + + Sbjct: 327 LAGARRVAVTAGPAGPMARVEVRDDGPGV-DADLRARLFEPFASGRARGAGLGLAISRRI 385 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 A + L + L Sbjct: 386 AERHGGALELADPGPPGAAFALTLP 410 >gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 910 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/218 (9%), Positives = 60/218 (27%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---------------RL 64 + + H++ +P+ AI ++L ++ E + Sbjct: 679 ATVSHELRTPLNAILGWTQILRRRKLDAESQARALETIERNGRAQNQLIEDILDVSRIIT 738 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLF 123 ++L + D + + + + + +++ NL Sbjct: 739 GKLKLDVRPLDLAAVIEEALDSVCLASEAKHIALHCTLDAEAASVSGDPARLQQVVWNLL 798 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNVESTIDS 178 A P GG++ + + + S++ +G + + DG+ Sbjct: 799 SNAIKFTPEGGRIDVRLAADGASALLSVRDSGVGITPEALPYIFERFRQADGSNTRAFGG 858 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215 + V L + + + + L + Sbjct: 859 LGLGLAIVRHLVELHGGTVTAHSDGPGRGALFAVRLPR 896 >gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1481 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 25/234 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMS 59 ++ +S + L + + H++ +P+ I +E +L + E + L+ ++ Sbjct: 932 SVEQQISDIKLR--FFTNVSHELRTPLTLIAGPIEQILQNGHLNHEEKEQLSLVERNTSR 989 Query: 60 AIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107 + + + V + + ++E F + Q+ + + Sbjct: 990 MLRLVNQILDFRKIQNNKMKMRVQQIDLIPFTRHIMESFNYLADEHQIDFGLKTELASLH 1049 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + KIL NL A P+G ++ + +++ E +++ G +K + Sbjct: 1050 IWADTDKLEKILFNLLSNAFKYTPQGKQIKTVITETETEVAVTVEDQGIGI-AEDKQKSL 1108 Query: 168 VDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S I V L + + + L K Sbjct: 1109 FVRFENLMDKNLFNQSSTGIGLSLVKELVEMHHGHISLHSHPGEGSRFTIRLPK 1162 >gi|284166174|ref|YP_003404453.1| multi-sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284015829|gb|ADB61780.1| multi-sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 642 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 56/231 (24%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 + + + ++ A S HD+ P+ + + L+LL+ +E + Sbjct: 408 ERALEESNERLEQFAYAAS---HDLQEPLRMVSSYLQLLERRYADEFDEDGEEFLDYAVD 464 Query: 56 SSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEK 108 + + + VD L D+ + D V+ Sbjct: 465 GAERMREMIDGLLAYSRVETRGDPFEPVDLDCLLEDVLDDLSLQLEETDAEVETEPLPRV 524 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE---K 163 + + ++ NL A Q S+ G + Sbjct: 525 RGDASQLRQVFQNLLANALEYSGPEPPRVHLEAAQREGAMWEVSVVDEGIGIDPEDQDRV 584 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + D I + + + E S L Sbjct: 585 FDVFQRLHSREEYDGTGIGLALCERIVERHDGEIWVESEPGEGSTFSVTLP 635 >gi|316931662|ref|YP_004106644.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599376|gb|ADU41911.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 590 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 61/246 (24%), Gaps = 35/246 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M ++ + +++ + + H++ +P+ ++ +++E L ++ +L+ + Sbjct: 346 MTDSLYNRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKTDNSRARLLSVIEHDV 402 Query: 61 IIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + + + V Sbjct: 403 KRLDRLISDISDASRLDAELQRQDAAQVDLRRLLTTLTLVANETRLGHSTMVEVKFDGPA 462 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 S +++ NL A + GGKV I + K E ++ G R Sbjct: 463 SDQFSVPGHDSRLGQVISNLLSNAQSFSCEGGKVRILCRRRKAEIEIIVEDEGPGIREDA 522 Query: 163 KFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNVV 208 + + + + R+ E Sbjct: 523 LEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGGRIWAENRVGPRGEDGEPTVAGAR 582 Query: 209 LSALLE 214 L Sbjct: 583 FVVRLP 588 >gi|297568693|ref|YP_003690037.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924608|gb|ADH85418.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 536 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 70/244 (28%), Gaps = 31/244 (12%) Query: 1 MAKNICF-----NLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQ 51 M + ++ V ++ I HD + + A++ + L L + Sbjct: 271 MEEQQALHRRFFQQQKLESVGVMAGGIAHDFNNLLTALYGQISLAELSLPADHPARAHLS 330 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----G 106 L S+ A + + + L + F ++ ++ Sbjct: 331 LAEGSANRARFLTRQLLTFTTGNHLHRRPLTLSRLLPETARFALTGSNCELQFSADEDLW 390 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKIN 154 + + NL + A ++ G++TIS ++ + N Sbjct: 391 PTELDPEQMGNVFHNLVLNARDAMGDNGELTISCRNLELPADTRLPLPPGRYVRIVFQDN 450 Query: 155 GNLARFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G PE ++I D + + + +++ + + + V + Sbjct: 451 GCGM-EPEVLSRIFDPYFSTKEKSSRKGTGLGLAICYSVINQHGGHIEVDSVKGQGTVFT 509 Query: 211 ALLE 214 L Sbjct: 510 LYLP 513 >gi|153853515|ref|ZP_01994895.1| hypothetical protein DORLON_00884 [Dorea longicatena DSM 13814] gi|149753670|gb|EDM63601.1| hypothetical protein DORLON_00884 [Dorea longicatena DSM 13814] Length = 497 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + + L L S I HD+ +P+ I E + + I+ V + Sbjct: 251 LKDSAEEKLKYDKESKELISNISHDLKTPVTTIKGYAEGIIDGVADTPEKIDRYVRTIYN 310 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQV 102 ++ + + + T + + + D V Sbjct: 311 KATEMNTLINELTLYSKIDTNKIPYNFNIVSANEYFNDCADDLSVELAAQNVGFGYFNYV 370 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 I + +++ N+ + + + + + V+D + L+ NG Sbjct: 371 EKNVRIIADPEQVKRVIHNIVNNSLKYMDKPKGMINLRVKDVGDFVQIELEDNGKGIAAK 430 Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + I V + E+ ++ ++ + +L K Sbjct: 431 DLPNIFDRFYRTDASRNSSTGGSGIGLSVVKKIVEEHGGKIWATSREETGTTMYFVLRK 489 >gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] Length = 886 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 24/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++ A L + + H++ +P+ I +LELL+ + E + +R+ S+ Sbjct: 351 LRRARDRAVAGEKQKAELLAVMSHEMRTPLNGILGTLELLEADSLPAEDQRYLRIIRQSS 410 Query: 61 IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 I L + D + L +I + D + Sbjct: 411 EILLGHVNEVLDISRLDAGKMTLRKTRFDLVALLEEIVESQADRARAQGNLLTLRPPNPA 470 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK 163 E +ILLNL A G + + DS + + G + + Sbjct: 471 LHEVYSDPDRLRQILLNLVSNAIKFTAGGRIMIEADCDSGMDDCELRVIDTGVGIKPDDL 530 Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D V + LA L E V L Sbjct: 531 -ARIFDDFVTIDSSYGRRNTGTGLGLSISQRLATALGGELGAESEPGDGSVFWLRLP 586 >gi|56420058|ref|YP_147376.1| histidine protein kinase [Geobacillus kaustophilus HTA426] gi|56379900|dbj|BAD75808.1| histidine protein kinase [Geobacillus kaustophilus HTA426] Length = 375 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 14/217 (6%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + L+ + S H+ +P+ AI ++LL + +I R+ Sbjct: 160 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 219 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L + + VD V + + + ++L+ Sbjct: 220 ASRKEIVESEKETFSLYQLLEEIIEFLYATIVDSDVDLSVAIDESIHIFAYKDQLRQVLV 279 Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 N+ + + ++ K + I + NG + I + + Sbjct: 280 NILLNSIEAVKEREKPRRINIAARCQDGSIIIEIANNGPSI-PADIVETIFEPFFTTKKL 338 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y + ++ + DD+ S L Sbjct: 339 GTGIGLYICKKVIEDHGGDICC-SSDDNMTTFSICLP 374 >gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] Length = 565 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 52/218 (23%), Gaps = 22/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65 + I H++ +P+ + S EL+ + + +++ S S Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSSSQREIVNNLSQSGEFLRTIINDLLDYSKIN 267 Query: 66 --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLN 121 + L D + I + V V+ ++ +N Sbjct: 268 AGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVN 327 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176 L A +G + ++ +G T Sbjct: 328 LIGNAIKFTDQGHVSVEIKWLNDQFIFS-VEDSGVGIAQSAIKTLFEPFTQADNSSSRNY 386 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + LA + + I + L Sbjct: 387 EGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLP 424 >gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 597 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 63/221 (28%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFM----- 67 S + H++ +P+ +I E L + + D +++I S + + Sbjct: 367 FVSSVSHELRTPLTSIRGYTETLLDGAMHDAEHTEAFLRIIHQESEQLTALVNDVLDLSK 426 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 R+ + + + + + F D R+ +S + + + + + + + Sbjct: 427 IESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVRLDLSIPADLPLVRGDASYLEIVVR 486 Query: 124 M---VAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 A + S ++ NG + +I + Sbjct: 487 NLLDNAVKYVDEHNGRIRLSAAKRDGFVTLEVEDNGIGIAQKDL-DRIFERFYRVDKARS 545 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K + + + L Sbjct: 546 RQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAFTLTLP 586 >gi|30264081|ref|NP_846458.1| sporulation kinase B [Bacillus anthracis str. Ames] gi|47529516|ref|YP_020865.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor'] gi|49186914|ref|YP_030166.1| sporulation kinase B [Bacillus anthracis str. Sterne] gi|49481643|ref|YP_038067.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321398|ref|ZP_00394357.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|167633550|ref|ZP_02391874.1| sporulation kinase B [Bacillus anthracis str. A0442] gi|167639461|ref|ZP_02397732.1| sporulation kinase B [Bacillus anthracis str. A0193] gi|170687306|ref|ZP_02878524.1| sporulation kinase B [Bacillus anthracis str. A0465] gi|170705724|ref|ZP_02896187.1| sporulation kinase B [Bacillus anthracis str. A0389] gi|177652687|ref|ZP_02935103.1| sporulation kinase B [Bacillus anthracis str. A0174] gi|190565758|ref|ZP_03018677.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I] gi|196035880|ref|ZP_03103282.1| sporulation kinase B [Bacillus cereus W] gi|218905141|ref|YP_002452975.1| sporulation kinase B [Bacillus cereus AH820] gi|228916646|ref|ZP_04080211.1| hypothetical protein bthur0012_38600 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929056|ref|ZP_04092086.1| hypothetical protein bthur0010_37460 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935324|ref|ZP_04098147.1| hypothetical protein bthur0009_37750 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947728|ref|ZP_04110015.1| hypothetical protein bthur0007_38550 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093058|ref|ZP_04224186.1| hypothetical protein bcere0021_38010 [Bacillus cereus Rock3-42] gi|229123530|ref|ZP_04252726.1| hypothetical protein bcere0016_38170 [Bacillus cereus 95/8201] gi|229600618|ref|YP_002868307.1| sporulation kinase B [Bacillus anthracis str. A0248] gi|254683773|ref|ZP_05147633.1| sporulation kinase B [Bacillus anthracis str. CNEVA-9066] gi|254721609|ref|ZP_05183398.1| sporulation kinase B [Bacillus anthracis str. A1055] gi|254736119|ref|ZP_05193825.1| sporulation kinase B [Bacillus anthracis str. Western North America USA6153] gi|254744009|ref|ZP_05201692.1| sporulation kinase B [Bacillus anthracis str. Kruger B] gi|254758098|ref|ZP_05210125.1| sporulation kinase B [Bacillus anthracis str. Australia 94] gi|300118636|ref|ZP_07056371.1| sporulation kinase B [Bacillus cereus SJ1] gi|30258726|gb|AAP27944.1| sporulation kinase B [Bacillus anthracis str. Ames] gi|47504664|gb|AAT33340.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor'] gi|49180841|gb|AAT56217.1| sporulation kinase B [Bacillus anthracis str. Sterne] gi|49333199|gb|AAT63845.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|167512520|gb|EDR87895.1| sporulation kinase B [Bacillus anthracis str. A0193] gi|167530956|gb|EDR93643.1| sporulation kinase B [Bacillus anthracis str. A0442] gi|170129264|gb|EDS98128.1| sporulation kinase B [Bacillus anthracis str. A0389] gi|170668923|gb|EDT19668.1| sporulation kinase B [Bacillus anthracis str. A0465] gi|172082022|gb|EDT67090.1| sporulation kinase B [Bacillus anthracis str. A0174] gi|190562677|gb|EDV16643.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I] gi|195991529|gb|EDX55495.1| sporulation kinase B [Bacillus cereus W] gi|218536215|gb|ACK88613.1| sporulation kinase B [Bacillus cereus AH820] gi|228659927|gb|EEL15571.1| hypothetical protein bcere0016_38170 [Bacillus cereus 95/8201] gi|228690320|gb|EEL44109.1| hypothetical protein bcere0021_38010 [Bacillus cereus Rock3-42] gi|228811715|gb|EEM58049.1| hypothetical protein bthur0007_38550 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824341|gb|EEM70150.1| hypothetical protein bthur0009_37750 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830605|gb|EEM76212.1| hypothetical protein bthur0010_37460 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842833|gb|EEM87916.1| hypothetical protein bthur0012_38600 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265026|gb|ACQ46663.1| sporulation kinase B [Bacillus anthracis str. A0248] gi|298723963|gb|EFI64670.1| sporulation kinase B [Bacillus cereus SJ1] Length = 424 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|331656452|ref|ZP_08357414.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA206] gi|331054700|gb|EGI26709.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA206] Length = 350 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ + LE++DE +E + + + L ++ Sbjct: 128 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 187 Query: 72 GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 T ++ + + + +V+E ++ + + + NL Sbjct: 188 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 247 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+ Q + FS++ NG PE ++ + Sbjct: 248 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 306 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ RL E S ++ Sbjct: 307 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 341 >gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] Length = 949 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 66/240 (27%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ + + + + + + H++ +P+ I +L+LL + V L+ Sbjct: 453 MEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQGVESLVTAM 512 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 + S+ + LK + ++ + + E + I + Sbjct: 513 NNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAMVVKKRLTLWCFI 572 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +++ NL A G + + V F ++ G Sbjct: 573 DSDVPVTLDGDPLRLQQVISNLLNNAIKFT-HTGGIILQVFVKDGYLAFRVRDTGVGIPA 631 Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ D + + L + + + + Sbjct: 632 KEIT-RLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQFVVRIP 690 >gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] Length = 646 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 + + + ++ + + H++ +P+ AI ++L G + + + Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGII 396 Query: 57 SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + S L + VD + ++ S Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAP 456 Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R ++L+NL A PRGG+V + V+ + +G Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 516 Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D + + + + V LA + + E ++ L Sbjct: 517 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574 >gi|227536008|ref|ZP_03966057.1| two-component sensor histidine kinase, phosphate regulation [Sphingobacterium spiritivorum ATCC 33300] gi|227244121|gb|EEI94136.1| two-component sensor histidine kinase, phosphate regulation [Sphingobacterium spiritivorum ATCC 33300] Length = 343 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 24/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 I S S I H+ +P+ AI +E L ++ + + Sbjct: 103 KSEIDKLRSQEKFRREFLSNISHEFKTPLFAIQGYIETLQDGLIEEDPEMAKGFLDKASK 162 Query: 56 SSMSAIIRLKFMRLAF-----GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + +++ I++ IE+ K ++ ++ Sbjct: 163 NLDRLSYLIHDLDEISKLESGRISLNIEKFDLSELIKETIENLDDKAKSQKIDIVFKQKY 222 Query: 111 LS--------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160 + ++ ++L NL + GG I + + + + +G Sbjct: 223 QNVTFVKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIEEKN 282 Query: 161 -PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P F + + I + V + ++ + + LEK Sbjct: 283 LPRVFERFYRTDKSRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEK 340 >gi|209525035|ref|ZP_03273579.1| integral membrane sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209494444|gb|EDZ94755.1| integral membrane sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 397 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 L S + H++ +PI + LE + E ++ Q + + + ++ Sbjct: 176 LISDLTHELRTPITVVRGYLEEMAEGRISPSPDIYQQLTKETKRLERLINNLQELSKVES 235 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---DLSRERAKILLNLF 123 + +++ + + +++ ++ E +IL+NL Sbjct: 236 GYLPINPQPLALRPLLESLVQRFSDQLLEEGPMLELDFSEELPLALADVDRTEQILVNLL 295 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVES--TIDS 178 A G + G P F + + Sbjct: 296 GNAIRYTKHGLIKIEVYTH-GGYLFVDVSDTGIGISEADLPHVFERFWRADRSRSRNYGG 354 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L + + L Sbjct: 355 TGIGLAITRRLVELQGGEIFVSSQLGKGSTFTFSLP 390 >gi|171909587|ref|ZP_02925057.1| multi-sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 957 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 26/230 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64 M+ V L + HD + + I LL I E+ + +S L Sbjct: 576 QKMEAVGQLAGGVAHDFNNILTVIQGYASLLQSGHISPADGVREISASVERASSLTRQLL 635 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121 F R +D + + ++ ++ + + V + + +I+LN Sbjct: 636 TFSRKQIMQPRELDLNVVVQNMITLLRRTLGEHVTLLVEADPHLPSVMADQGMMEQIILN 695 Query: 122 LFMVAHASLPRGGKVTIS---------------VQDSKNENIFSLKINGNLARFPEKFTQ 166 L + A ++ +GG +T+ + + G E T+ Sbjct: 696 LAVNARDAMCKGGTLTVHTGSAVITEEEARLHADARVGLAVLIKVTDTGYGIPV-ENLTR 754 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + ++ + LL Sbjct: 755 IFEPFFTTKEVNQGTGLGLATVHGIVRQHGGLVRVSSQLGVGTEFQILLP 804 >gi|329939047|ref|ZP_08288421.1| two-component sensor kinase [Streptomyces griseoaurantiacus M045] gi|329301932|gb|EGG45825.1| two-component sensor kinase [Streptomyces griseoaurantiacus M045] Length = 381 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 52/234 (22%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56 ++ + A L + + H++ SP+ ++ L +++ + Sbjct: 140 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 199 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + VD +G Q R + Sbjct: 200 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQPADRFLLRIEHPL 259 Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 L + ++L NL A + + ++ G Sbjct: 260 PALWADPDKIDQVLSNLLENAVRHGEGTVTIEITPSASPREGEEAGTSVTVSDEGPGIPE 319 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + Y V + + + + L Sbjct: 320 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGVITVGRAPSGGALFRFTLP 373 >gi|325111286|ref|YP_004272354.1| histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324971554|gb|ADY62332.1| histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 567 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 75/236 (31%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 + + + + + A+ L S + H+ + + AI L+E ++L+ Sbjct: 184 LREKDRQLMHAQRMEAVGTLASGVAHEFNNLLHAIRGYTSFAQGRLEEGHAAHADLELVF 243 Query: 55 LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +S L + R VD + ++ +++ + D VQ + Sbjct: 244 NASDHAAVLTRQLLDYSRTGTDDLTIVDVGETVSNLVKMLRPILGKDVEVQSQIPEQSEL 303 Query: 111 L----SRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARF 160 ++ ++NL + A ++ G+ V + ++ + ++ +G Sbjct: 304 FVLASRVYLSQAIMNLCVNARDAMNASGRLTLTLSRKAGVDNQNDQIVITVADSGGGI-P 362 Query: 161 PEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + V + + + + + L Sbjct: 363 DEIREKIFDPFFTTKAPGKGTGLGLAMVFNTIKKLGGSIEIDSVVGAGTTFTLTLP 418 >gi|254734856|ref|ZP_05192568.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254755511|ref|ZP_05207545.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254760047|ref|ZP_05212071.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] Length = 357 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 M + + S + H+I SP+ +I L + + +I Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109 + + + + + + + + +K +++ EK+ Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239 Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 ++ + +++ +NL + P G ++I +++ + ++ G+ + Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 299 Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + ++ + E + + + Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 352 >gi|225026831|ref|ZP_03716023.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353] gi|224955838|gb|EEG37047.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353] Length = 437 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 57/223 (25%), Gaps = 19/223 (8%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 L S + + + H++ +P+ AI EL++ + E + RL + Sbjct: 214 LKSARMRQDFTANVSHELKTPLTAISGYAELMENGMVPPEEIGSFAQKIEKNARRLLSLI 273 Query: 69 LAFGYTGSVD--------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +D + I E Sbjct: 274 NDIIRLSELDSSNTQLLVEKFDLFEEAQICVENMQIYAEKNDVTITYEGGHQEITANREM 333 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171 +++ NL A + G V + V S+ S+ G F + + Sbjct: 334 INELINNLCANAIRYNKKNGSVKVRVDSSQGHPYISVADTGIGISKEHQKRVFERFYRVD 393 Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + V + + +L E ++ Sbjct: 394 KSRSKQTGGTGLGLAIVKHIVALHDAQLNLESEVGKGTTITVT 436 >gi|195978473|ref|YP_002123717.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975178|gb|ACG62704.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 432 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 59/215 (27%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFGY 73 + H++ +P+ +I E + E+ ++ ++ + S I + L+ Sbjct: 214 ANASHELRTPVTSIKGFAETIKEMPDDETSLKEDFLDIIYNESLRLERIVEHLLTLSKAN 273 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMV 125 +D + + + + ++I+LNL Sbjct: 274 KTPLDLTEFQLRSFLLYTGQSMRPQLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSN 333 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A GG++ +S Q ++ G E +I + Sbjct: 334 AIQYTDNGGRIQLSSQRVAGGVAITVADTGIGISQIEL-DRIFERFYRVNKGRSRQSGGT 392 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 393 GLGLAIVKELSQLLGGQITVTSQLGEGSQFTLFLP 427 >gi|165871168|ref|ZP_02215818.1| sporulation kinase B [Bacillus anthracis str. A0488] gi|227816783|ref|YP_002816792.1| sporulation kinase B [Bacillus anthracis str. CDC 684] gi|254754211|ref|ZP_05206246.1| sporulation kinase B [Bacillus anthracis str. Vollum] gi|164713087|gb|EDR18614.1| sporulation kinase B [Bacillus anthracis str. A0488] gi|227005756|gb|ACP15499.1| sporulation kinase B [Bacillus anthracis str. CDC 684] Length = 424 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGQGTEAIIILP 418 >gi|163743182|ref|ZP_02150564.1| sensory box histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161383599|gb|EDQ07986.1| sensory box histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 880 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ A L + + H++ +P+ + ++ELL+ + + + S Sbjct: 336 LTRTRDEALAGERAKADLLTVMSHEMRTPLTGVLGAVELLEGTALSPDQHDYVSAIRTSG 395 Query: 61 IIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + D + L D Q D + S Sbjct: 396 DRLMAHVNDVLQLSQLETSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSLHCSLGA 455 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE 162 D+ + L + +L V + + S+ G + Sbjct: 456 SGGDVLGRPVALKKVLVNLIENALQFTTDGAVSVDVQRLGQSDTVEISIADTGAGIAERD 515 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + E + + L Sbjct: 516 L-DRIFEDFIRLDASYARSSEGTGLGLAITRRIVVALGGDISCESELGEGSLFTISLP 572 >gi|90414670|ref|ZP_01222641.1| putative nitrogen regulation protein [Photobacterium profundum 3TCK] gi|90324212|gb|EAS40787.1| putative nitrogen regulation protein [Photobacterium profundum 3TCK] Length = 349 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 66/232 (28%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + + A L + H+I +P+G + + +LL++ + + ++ A Sbjct: 118 SQELSQHAQQQAAKELVRGLAHEIKNPLGGLRGAAQLLEKTLPDPCYTEYTQMIIEQADR 177 Query: 63 RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + G + I L + Q++ + ++ + D + + + Sbjct: 178 LRNLVDRLLGPQRPGLQKIDNIHIVLEKVRQLVNLDCGENIQLHRDYDPSLPDFTMDSEQ 237 Query: 118 ILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + + + + I + + + +G E Sbjct: 238 LEQAILNIVSNAALELQQVSGGNITLKTRTAHQALIQGKRYRIAAKIDIIDDGPGI-PSE 296 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L ++ ++ H + L Sbjct: 297 IQDTLFYPMVTAREGGTGLGLSIARNLVDQHHGKIEVVSWPGH-TKFTIYLP 347 >gi|83268889|gb|ABB99941.1| hypothetical protein pCT0023 [Listeria monocytogenes] Length = 370 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 17/218 (7%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L L + I H++ +P+ + ++E + + I E +Q + + + Sbjct: 151 LRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNIEIIN 210 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLN 121 D L + + + + ++ +++ + ++++N Sbjct: 211 KIEAKYDHLNKTEFNIYKLIESVIENFASKIESKNLHVEIQGDNINISADKDKMNQVVIN 270 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTI 176 L A + G + S+ +K+ + ++ NG F + + + Sbjct: 271 LLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSRSRAL 330 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + +K + + L Sbjct: 331 GGQGIGLAIVKSVVEAHKGSITVKSKLGLGTKFVIKLP 368 >gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 913 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53 MA+ + +L L + + H+I +P+ AI EL+ D+ ++E M +I Sbjct: 535 MAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSCDDPEEKEEYMGII 594 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------- 103 + ++ + + + + + + + + +++ Sbjct: 595 QSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGN 654 Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +N A G + + K F ++ +G Sbjct: 655 SGPDCWIFLDRNRLKQVWMNYLTNAVKCT-HSGYIKMGYSIEKGGIRFYVEDSGVGIPL- 712 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + ++ + A + Sbjct: 713 EVQDRVFGRFQKLNEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIP 767 >gi|304406484|ref|ZP_07388140.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304344542|gb|EFM10380.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 1088 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 63/231 (27%), Gaps = 22/231 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-------EDEVMQLIRLSSM 58 LS L +R H++ +P+ I E L + E+ +QLIR S Sbjct: 424 ERLLSLDKLKDEFLARTSHELRTPLHGIIGLTESLLDGPAGSRLSAEENGHLQLIRSSGQ 483 Query: 59 SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + +++ + + ++ + ++ + Sbjct: 484 RLAHLVNDILDFSKLRNREIQLHPVTINVHQIVELVLHLLRPLAEGKGLLLINEVPPALQ 543 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQIV 168 + + ++ L + + + + + + + ++K G Sbjct: 544 VRADENRLHQMLHNLVGNATKFTLQGHVVISARKQARQITINIKDTGIGIAQESLGVIFE 603 Query: 169 -----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D S I L + R+ E S L Sbjct: 604 SFEQLDPTTNSRFGGTGIGLSITKKLVELHGGRIWAESTPGLGSSFSFTLP 654 >gi|303245364|ref|ZP_07331648.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio fructosovorans JJ] gi|302493213|gb|EFL53075.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio fructosovorans JJ] Length = 1137 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 31/240 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 L S + A+ L I HD + + +I NS EL L E + M+ + + Sbjct: 753 ERQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSAELALLDLPEDEPIGDDMRRVLKAGH 812 Query: 59 SAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +K + + + ++ +G+ +I+ + + ++ + + + Sbjct: 813 RGSRLVKQILSFTRPSQAGFAAINVADVVGEAAGLIKASVPRNIKIVLDVPERAVTCRAD 872 Query: 115 R---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156 +I++NL A ++ + + S+ G Sbjct: 873 PTQLHQIVMNLCTNAFQAMRETGGLLTVSLAEEALDETQAGHVGARAGRYAKLSIVDTGP 932 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + V + ++ + L Sbjct: 933 GI-PPEILDKIFDPFFTTKQKGEGTGLGLAVVRGIVKSHRGAVRVVSQPGTRTDFDVYLP 991 >gi|296447368|ref|ZP_06889295.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylosinus trichosporium OB3b] gi|296255147|gb|EFH02247.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylosinus trichosporium OB3b] Length = 409 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 63/222 (28%), Gaps = 27/222 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L S + H+I +P+ I + +LL+ + + +LI + + + M + Sbjct: 158 LASMLAHEIKNPLSGIRGAAQLLESSVGDEDRALTRLICDETDRIVRLVDRMEVFSDQRP 217 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRERAKILLNLFMVAHA 128 + + + ++ + + + ++ LNL A Sbjct: 218 PERDKVNIHIVLDHVKRVARSGFARHIRFIENYDPSLPPVAANRDQLIQVFLNLVKNAAE 277 Query: 129 SLPRGG----------------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ + + F ++ NG + + D V Sbjct: 278 AIGDAVDGEIELSTAFRPGVSLRTMGEGRPVGLPLEFCVRDNGRGV-PEDIAAHLFDPFV 336 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +++ + E L+ Sbjct: 337 TTKSSGSGLGLALVAKIVNDHGGIVECESHP-RRTTFRILMP 377 >gi|265751821|ref|ZP_06087614.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_33FAA] gi|263236613|gb|EEZ22083.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_33FAA] Length = 748 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 59/224 (26%), Gaps = 20/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 +L + + H+I +P+ AI LL + E +I ++ + + Sbjct: 524 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 583 Query: 65 K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 M + + QVI + Sbjct: 584 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 643 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N A +G D + + F ++ G E I + Sbjct: 644 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEEL-QMIFERFY 702 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + + + +A+L Sbjct: 703 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 746 >gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 910 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53 MA+ + +L L + + H+I +P+ AI EL+ D+ ++E M +I Sbjct: 532 MAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSCDDPEEKEEYMGII 591 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------- 103 + ++ + + + + + + + + +++ Sbjct: 592 QSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGN 651 Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +N A G + + K F ++ +G Sbjct: 652 SGPDCWIFLDRNRLKQVWMNYLTNAVKCT-HSGYIKMGYSIEKGGIRFYVEDSGVGIPL- 709 Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + ++ + A + Sbjct: 710 EVQDRVFGRFQKLNEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIP 764 >gi|237726273|ref|ZP_04556754.1| two-component system response regulator sensor kinase [Bacteroides sp. D4] gi|229434799|gb|EEO44876.1| two-component system response regulator sensor kinase [Bacteroides dorei 5_1_36/D4] Length = 748 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 59/224 (26%), Gaps = 20/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 +L + + H+I +P+ AI LL + E +I ++ + + Sbjct: 524 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 583 Query: 65 K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 M + + QVI + Sbjct: 584 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 643 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N A +G D + + F ++ G E I + Sbjct: 644 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEEL-QMIFERFY 702 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + + + +A+L Sbjct: 703 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 746 >gi|217969885|ref|YP_002355119.1| multi-sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|217507212|gb|ACK54223.1| multi-sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 745 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 72/244 (29%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMD----------LVALLCSRICHDIISPIGAIHNSLE----LLDEVGIE 46 + + L S+ +A++ S + H++ P+ AI ++ + +L + Sbjct: 499 LRRRDELELESLRAQRWHADRVAQIAVMTSSLAHELSQPLTAILSNAQAGLRMLRAGALP 558 Query: 47 --------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIA 95 ++++ + ++ +R V+ + D+ ++ Sbjct: 559 AEEGEAILEDIVADDKRAAQVIESLRAMLRRRPTERQRVEIAQLVRDVMGLMHSELVMND 618 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFS 150 V + + G + ++L+NL M ++ +D FS Sbjct: 619 VRFELDLLAEGCIEVDRAQIQQVLINLIMNGIEAMHELPPGGRLLSLTVTRDEARGVKFS 678 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + G+ + ++ + + + R+ E S Sbjct: 679 VTDVGHGLEVLD-PGKVFQPFWTTKTTGIGMGLAICRSIVEAQGGRIWGENNAGPGATFS 737 Query: 211 ALLE 214 L Sbjct: 738 FTLP 741 >gi|212691439|ref|ZP_03299567.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855] gi|212666049|gb|EEB26621.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855] Length = 757 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 59/224 (26%), Gaps = 20/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 +L + + H+I +P+ AI LL + E +I ++ + + Sbjct: 533 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 592 Query: 65 K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 M + + QVI + Sbjct: 593 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 652 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N A +G D + + F ++ G E I + Sbjct: 653 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEEL-QMIFERFY 711 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + + + +A+L Sbjct: 712 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755 >gi|254183746|ref|ZP_04890338.1| sensory box histidine kinase [Burkholderia pseudomallei 1655] gi|184214279|gb|EDU11322.1| sensory box histidine kinase [Burkholderia pseudomallei 1655] Length = 821 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 580 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 636 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 637 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 696 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 697 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 755 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 756 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 807 >gi|30019452|ref|NP_831083.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|218234975|ref|YP_002366083.1| sensor histidine kinase [Bacillus cereus B4264] gi|228957670|ref|ZP_04119417.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229043139|ref|ZP_04190864.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676] gi|229108855|ref|ZP_04238460.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15] gi|229126715|ref|ZP_04255727.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4] gi|229144004|ref|ZP_04272420.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24] gi|229149600|ref|ZP_04277832.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550] gi|296501981|ref|YP_003663681.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|29894996|gb|AAP08284.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] gi|218162932|gb|ACK62924.1| sensor histidine kinase [Bacillus cereus B4264] gi|228633946|gb|EEK90543.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550] gi|228639401|gb|EEK95815.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24] gi|228656655|gb|EEL12481.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4] gi|228674624|gb|EEL29863.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15] gi|228726198|gb|EEL77430.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676] gi|228802012|gb|EEM48882.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323033|gb|ADH05961.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 466 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + E D + L Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457 >gi|320353817|ref|YP_004195156.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122319|gb|ADW17865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1002 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 ++ M++V L + HD + + I + +E+ L E + + + Sbjct: 623 ESQLLQSQKMEVVGRLAGGVAHDFNNMLTVIGSYVEMTLSDLTEQHPLYRRLFEVHKAVQ 682 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------IDL 111 + + + ++ L + + + + Sbjct: 683 HSADLTRQLLAFARKQVIAPKVLDLNETITAALKMLQRLIGEHIDLQWQPGASLWPVRMD 742 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNL 157 S + ++L NL + A ++ G + I + + + S+K +G Sbjct: 743 STQIGQVLANLAVNARDAISGAGHLHIQTANVVVPADDAPCLELSPGDYVLISVKDDGCG 802 Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++I + + + + V + +N + V L + Sbjct: 803 M-DQETQSRIFEPFFTTKENGCGTGLGLATVYGIVKQNDGAITVASAPGQGTVFHVYLPR 861 >gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria maculans] Length = 1313 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 57/242 (23%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + N + + + L + H++ +PI + ELL ++ + +E + SA Sbjct: 710 LLANTAAAKEASRMKSNLLANTSHELRTPIAGVIGMSELLFDMDLNEEQKECTENIHRSA 769 Query: 61 I------------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 D + Q + +V Sbjct: 770 SSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLAYQSFIQDEV 829 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158 + +IL+N+ + G + + F++ G Sbjct: 830 EMDLRVMGDPGRLRQILINVLTNSIKFTSVGVVKLTVGISRETKNTVTVNFTVSDTGIGI 889 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E ++ + L K ++ + + Sbjct: 890 -EEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSKLGQGTTATFW 948 Query: 213 LE 214 + Sbjct: 949 IP 950 >gi|298385951|ref|ZP_06995508.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298261179|gb|EFI04046.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1346 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78 I H+ +P+ I +E+L ++ + V I+ +A + + Sbjct: 827 NISHEFRTPLTLILGQIEVLMQMDLGTTVYNRIQRIYKNAWHMRNLISELLDFRKQEQGY 886 Query: 79 ----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125 E + + E I + + ++ +F Sbjct: 887 LKLRVEEQNLVTFTRQIYMCFYEYAQKKEITYRFDSVEETISVWFDPIQLQKVIFNLLSN 946 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-------S 178 A G +T+ V+ ++ + S+ G Sbjct: 947 AFKYTSNKGNITVEVRKVASQAVVSVCDTGIGIPVEHISKIFDRFYQTENASSSSSFTLG 1006 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + ++ E L Sbjct: 1007 TGIGLALAKGIMNMHHGKIEVESTVGEGTKFILSLP 1042 >gi|284923232|emb|CBG36326.1| aerobic respiration control protein (bifunctional two-component sensor kinase/response regulator) [Escherichia coli 042] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTVEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 300 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/236 (8%), Positives = 60/236 (25%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50 + + + + + L + + + H+I +P+ AI LL + ++ + Sbjct: 60 LKQTEAMLIQAKEKAEEADWLKSAFLANMSHEIRTPLNAIIGFSSLLHYVENEQEREQYI 119 Query: 51 QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 LI ++ + + + L + + + + Sbjct: 120 SLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPAGVKLFA 179 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + G+ +IL N A + +G D+ S+ G Sbjct: 180 RYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGYIEVYYETDTDG-IRISVSDTGCGIP 238 Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + L Sbjct: 239 PDKLGMIFERFEKVDSFAQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 294 >gi|330831032|ref|YP_004393984.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328806168|gb|AEB51367.1| Two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 770 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 54/219 (24%), Gaps = 24/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + ++ Q ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRMLMDTPLDPSQRQQLKTIHLSAVTLGNIFNDIIDLDKLDRR 347 Query: 80 LIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + Q + + + + ++L NL Sbjct: 348 RLEIAPTRLDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLV 407 Query: 124 MVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDGNVES---T 175 A GG + +E F ++ G ++ Sbjct: 408 GNAVKFTDEGGVTVRCLSHPADEPGKLALHFEVEDTGIGIPRAQQEKIFAMYYQVQGKKH 467 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L RL + +A LE Sbjct: 468 ATGTGIGLAVSRQLVQAMGGRLYVDSDPGEGSCFTAELE 506 >gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 370 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 64/235 (27%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 AK S + L + + H++ +P+ +I +++ + + + + Sbjct: 128 AKLEAEATSQAK--SELLANVSHELRTPLTSIIGFSDIMLKGKAGKLNNNQINYLNKIHK 185 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTG 106 S L + + + L + ++ + Sbjct: 186 SGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPLASEKGLTLDSKINP 245 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + K+ L+ + + ++ +T V N FS+ G ++ Sbjct: 246 DIEYVCMDNIKLRQILYNLIYNAIKFTNNGSITTEVDFVDNNYQFSVIDTGIGIPEDKQD 305 Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + V L + + E + + Sbjct: 306 EIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKYGEGSRFTFTIP 360 >gi|317051405|ref|YP_004112521.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316946489|gb|ADU65965.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 811 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 17/254 (6%), Positives = 63/254 (24%), Gaps = 43/254 (16%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------------ 50 + + + L+ L + + H+I +P I + +L ++ + ++ Sbjct: 546 QQEAMRAAHLSLMGQLSAGVAHEINNPNNFIMLNTSVLQDIWGDISMLLERMHAHQPLHA 605 Query: 51 ------QLIRLSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIA 95 +L + + + + + + + Sbjct: 606 GGFTFDELRDEIPQMLSRIHRGSQRIKVIVDHLKEFSSQEKATLRDDVEINQVIRDGLTM 665 Query: 96 VDKRVQVSWTGEK----------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK- 144 + ++ + ++++NL M A + + I Sbjct: 666 MANEIRKHGEQFRLELTDQLPLLRGRGPRLEQVIINLVMNALEATHGMQEEVIVASRFNA 725 Query: 145 --NENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPE 200 + ++ G P+ + + + + + E+ + + Sbjct: 726 DTSMVEVTVSDTGCGI-EPDTLKHLFEPFFTTKYAAGGTGLGLAICQSIIEEHMGSIRVD 784 Query: 201 IIDDHNVVLSALLE 214 + L Sbjct: 785 SSPGIGTTFTVSLP 798 >gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 923 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 30/241 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK++ + +++ H+I +P+ +I + L + D+ + + + S+ Sbjct: 388 LAKDLAEEANKTK--TDFLAKVTHEIRTPLNSIKGMNDYLLSTSLNDDQRECLSIIKESS 445 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SW 104 L + + I Q + + +D V Sbjct: 446 NHLLTIVNDLLDLSKIEAGQLVFEHIDFALKQLIESTIRILQPLANQKKLDLHVAYEGDA 505 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159 ++L NL A G S+K G Sbjct: 506 DIVVRGDPSRIRQVLFNLANNALKFTQTGTVGIVASVAWQESLDAYAITISIKDTGIGI- 564 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + L + + L Sbjct: 565 AAEALQRIFQPFVQSDNSTSRKFGGTGLGLSICNQLIALMGGTIAVSSRPGQGSTFTFTL 624 Query: 214 E 214 + Sbjct: 625 Q 625 >gi|255523525|ref|ZP_05390493.1| histidine kinase [Clostridium carboxidivorans P7] gi|296186515|ref|ZP_06854918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|255512782|gb|EET89054.1| histidine kinase [Clostridium carboxidivorans P7] gi|296048962|gb|EFG88393.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 462 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 17/222 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 L L I H++ +P+ + + +E L + E + + + + Sbjct: 239 EQEKLRQRLTRDISHELRTPLSTLQSHMEALIDRVWEPTTERLTSCHEEILRLKRLVGDL 298 Query: 68 RLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 Y G + + + V + +DK VQ+ E I + ++ + Sbjct: 299 EKLAEYEGENLILNKTKFNMREVINNIAVNFEKQFLDKGVQLILNAEDISIYADKDKIIQ 358 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174 +++NL A + GKV +++ + + S++ G + F + + Sbjct: 359 VIVNLISNALKYTEKDGKVEVNLLEDSHFVKLSVRDTGIGISEVDLQYIFERFYRADESR 418 Query: 175 T--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + ++ E + ++ Sbjct: 419 NKLTGGAGIGLTITKSIIEAHNGSIVVESKINEGSEFVIMIP 460 >gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] Length = 646 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 + + + ++ + + H++ +P+ AI ++L G + + + Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGII 396 Query: 57 SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + S L + VD + ++ S Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAP 456 Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +R ++L+NL A PRGG+V + V+ + +G Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 516 Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ D + + + + V LA + + E ++ L Sbjct: 517 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574 >gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] Length = 919 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 72/239 (30%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + ++ + + H++ +P+ I +LELL + +E +L++ Sbjct: 429 MERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLTQNEETARLLKTM 488 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRV 100 S+ + LK + ++ + + ++ + + Sbjct: 489 DNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKKDLAIYCFI 548 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL + G +T+ + + F + G Sbjct: 549 EPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYRDEYYLYFDIHDTGRGINE 607 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ES + + L + + ++ + + Sbjct: 608 KMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVGSRFTVRIP 666 >gi|254448754|ref|ZP_05062211.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] gi|198261595|gb|EDY85883.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] Length = 882 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 72/236 (30%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + +S+ ++ + + H+I +P+ I L++L+ ++ + Q I + ++A Sbjct: 281 LTIAQAEAVSANKAKSVFLANMSHEIRTPLNGIIGFLDMLNRTKVDSQQNQYISTAQVAA 340 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104 ++ + + +G + I+ ++ + + Sbjct: 341 KSLIQLINGILDFSRIESGKMPLKQDEIPIDDLLAEIYDLHAPSAFEKGVELLFFPAQSL 400 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARF--- 160 + + +I+ NL A G ++N I S+ +G Sbjct: 401 PSTLMLDANVFKQIIGNLLSNAIKFTQHGDIQLHMNYFAENRAIAISVLDSGVGISQEVI 460 Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + G+ + + L + + + ++ Sbjct: 461 NDIFNEFEQGDNTTARVHGGSGLGLAITRSLVELHGGSISAHTRPEGGARFDLTIQ 516 >gi|254442095|ref|ZP_05055571.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256403|gb|EDY80711.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 536 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 66/240 (27%), Gaps = 29/240 (12%) Query: 4 NICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + +L + L A S+ + H+ +P+ I LE+L D ++ + Sbjct: 142 RLAKDLENEKLKAEAASKAKSEFLAVMSHEFRTPMNGIIGGLEILKNEPAGDSSREIQSM 201 Query: 56 SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------------AVDKR 99 A + L+ + SV+ IG + VI + ++ Sbjct: 202 MRECAFNQLELINDVLDLSKIESNSVELEIGPVCLSDVITSTMGTLGFKAESKSIKLESF 261 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 V S +R +ILLNL A G F++ G Sbjct: 262 VDPSVPNSFRSDARRIRQILLNLVGNAVKFTDSGEVKLKVTSSLGGMLEFTVTDTGIGIA 321 Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + DG+ + + L + E S + Sbjct: 322 EADIKKVFESFSQVDGSYQRRYQGTGLGLTICKRLTRILGGEIRVESQLGVGSKFSVTIP 381 >gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis HI4320] gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response regulator domains] (capsular synthesis regulator component C) [Proteus mirabilis HI4320] Length = 942 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 72/239 (30%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + ++ + + H++ +P+ I +LELL + +E +L++ Sbjct: 452 MERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLTQNEETARLLKTM 511 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRV 100 S+ + LK + ++ + + ++ + + Sbjct: 512 DNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKKDLAIYCFI 571 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL + G +T+ + + F + G Sbjct: 572 EPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYRDEYYLYFDIHDTGRGINE 630 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ES + + L + + ++ + + Sbjct: 631 KMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVGSRFTVRIP 689 >gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1242 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 23/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77 +R+ H+I +P+ + ELL + + + + S L + ++ Sbjct: 568 ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627 Query: 78 ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123 + L D+ ++E R S +IL NL Sbjct: 628 KLTLERIDFNLHQLLDDVVALLEPNARRKALELVYRRADSVPQRMRGDPVRLRQILTNLL 687 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A G + +F++ +G P+ Q+ + Sbjct: 688 GNAIKFTEHGHVGLSASYSDDGRIVFTIADSGIGI-PPDISAQLFRPFQQADSSTARKYG 746 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L + V + Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSAPGKGSVFTVTTP 783 >gi|170759965|ref|YP_001787669.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169406954|gb|ACA55365.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 303 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 21/219 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + S I HDI +P+ A+ ++LL + I E + LK + F + Sbjct: 82 MISNISHDIRTPLTALMGYVDLLSDNSITKEKKEEYISIIRERGTALKDLMEEFFQMAKL 141 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLN 121 + IE+ + + + ++I+ N Sbjct: 142 ECNDVEITIEKFNISEVVRKNIITFMNEINERNIAPKINIGDEEIFALGDKNYMSRIITN 201 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176 L + G + I +++ S+ G E F ++ G Sbjct: 202 LISNSLKYGYEGNVIGIDLKEDNKWITLSIWDKGKGIDKNELPYIFDRLYTGEKSRNRSF 261 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + + I + + + K Sbjct: 262 QGSGLGLSIVRNMAQHMNGSITAQSIPYERTIFTVKIPK 300 >gi|150396735|ref|YP_001327202.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150028250|gb|ABR60367.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 872 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60 +N M+ V L I HD + + AI S + LL + L+ + + Sbjct: 468 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 527 Query: 61 II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L F R ++ +GD+ +++ + +V+V + + + + Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVRTD 587 Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156 ++LLNL + A ++P GG +T+ ++ ++ + + G Sbjct: 588 LGQFEQVLLNLAVNARDAMPAGGIITLRTRNLPAGEVAALGRRELPEEDFVMVEVSDEGT 647 Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + V + ++ + PE LL Sbjct: 648 GI-SPEIMDKIFEPFFTTKDVGKGTGLGLSMVYGIVKQSGGYIYPESEIGSGTTFRILLP 706 Query: 215 K 215 + Sbjct: 707 R 707 >gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis] Length = 507 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 72/239 (30%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + ++ + + H++ +P+ I +LELL + +E +L++ Sbjct: 23 MERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLTQNEETARLLKTM 82 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRV 100 S+ + LK + ++ + + ++ + + Sbjct: 83 DNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKKDLAIYCFI 142 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + +++ NL + G +T+ + + F + G Sbjct: 143 EPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYRDEYYLYFDIHDTGRGINE 201 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ES + + L + + ++ + + Sbjct: 202 KMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVGSRFTVRIP 260 >gi|75910949|ref|YP_325245.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704674|gb|ABA24350.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 630 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 74/235 (31%), Gaps = 28/235 (11%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63 ++ + L S I HD+ + + I + +LL+ + ++ ++ ++ Sbjct: 256 LRAQRLESIGTLASGIAHDLNNVLAPILMTAQLLESQIKDERSQRLLPILITNAKRGANL 315 Query: 64 LKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116 +K + + +G+I+Q+I++ + + +S + Sbjct: 316 VKQVLSFTRGLEGERTLLQLKHLVGEIQQIIKETFPKSIELAAHISQNLWTVSGDATQLH 375 Query: 117 KILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLARFP 161 ++L+NL + A ++P+GG + ++ G Sbjct: 376 QVLMNLCVNARDAMPKGGTLKITAENFLIDENYARMNIDAKVGPYVVVTVTDTGIGI-SS 434 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + + + V+ + + + + L Sbjct: 435 DILDRIFEPFFTTKELGKGTGLGLSTVLGIIKSHGGFINVYTEEGEGSQFKVYLP 489 >gi|329765784|ref|ZP_08257351.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137736|gb|EGG42005.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 510 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 79/224 (35%), Gaps = 16/224 (7%) Query: 3 KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + L + L +RI HD+ +P+ I +++ ++ ++ ++ + I + + Sbjct: 285 QAQNDLIKKEKLSVIGELTARISHDLRNPLSVIKLAVDNMESRISKKLDPKIEEYIPVIN 344 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRE 114 S + G+ + + + L I +++E+ I + ++ + L Sbjct: 345 DSLSRINYQINQVLGFVKTTNIDMKLVSILKILEESIKHTNIPDNIILTLPEKDFSLIAN 404 Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDG 170 R ++ + ++ + ++ ++ I + +G+ E +I + Sbjct: 405 RIQLEAAFSNILSNSVDAIGQSNGKITIRARNEKDQIILEFEDSGDGI-AKENIEKIFEP 463 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ + V + L Sbjct: 464 LFTTKQKGTGLGLASVKSIIDTHGGKISVKSPP---TVFTITLP 504 >gi|325960004|ref|YP_004291470.1| multi-sensor signal transduction histidine kinase [Methanobacterium sp. AL-21] gi|325331436|gb|ADZ10498.1| multi-sensor signal transduction histidine kinase [Methanobacterium sp. AL-21] Length = 1077 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 66/238 (27%), Gaps = 28/238 (11%) Query: 1 MAKNICFNL--------SSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIE 46 +A+N + ++ A + S HD+ P+ + + +LL+ Sbjct: 830 LAQNSLMEMVTKLKTSNKELEQFAYVAS---HDLQEPLRMVASFTQLLERRYKNHLDDDA 886 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 ++ + I + + + + + + + + Sbjct: 887 NDYIDFIVEGAQRMKDLIDDLLAFSRLNTEVHKFEPILVEVALDDVSFNLKSSIEENNAT 946 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + ++ NL A K+ +S Q+ +E IF + NG Sbjct: 947 ITYDPLPTINGDPSQIRQLFQNLISNAIKFHGDTPPKIHVSAQELDDECIFGVTDNGIGI 1006 Query: 159 RF--PEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ I + I + + ++ E + + + Sbjct: 1007 NQNHQEQIFSIFKRLHTRKDYEGTGIGLAICKRIVERHGGKIWVESEEGNGSTFYFTI 1064 >gi|331659497|ref|ZP_08360439.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA206] gi|315297924|gb|EFU57194.1| PAS domain S-box [Escherichia coli MS 16-3] gi|331054079|gb|EGI26108.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA206] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 52/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + F+ + + + I +IL NL Sbjct: 348 KVQLDNQLVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] Length = 583 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 17/221 (7%), Positives = 53/221 (23%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIR--------- 63 + + H++ +P+ + + E L + I+ + ++ + Sbjct: 357 FVANVSHELRTPLTTVKSYTETLLDGAIDEKETAMHFLGVMEKEADRMTALVQDLLELSR 416 Query: 64 ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + + +I+ ++ +IL Sbjct: 417 IDNKQIQLEFVRLNLKPLLEEVLEAQYIHIIKHGHQLEVGYDKKEEYFIEGDLSRIRQIL 476 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 N+ A P G + + ++ I + G + +I + Sbjct: 477 HNILSNAIKYSPEPGTLGVYMKKENAYVIVEITDTGMGIPEEDL-ERIFERFYRVDKARS 535 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + E + Sbjct: 536 RKMGGTGLGLSIAKELMLLHGGDIKIESQLGQGTKVILNFP 576 >gi|226312404|ref|YP_002772298.1| sporulation kinase [Brevibacillus brevis NBRC 100599] gi|226095352|dbj|BAH43794.1| sporulation kinase [Brevibacillus brevis NBRC 100599] Length = 606 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 13/225 (5%) Query: 2 AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54 +N + L + L + I H+I +P+ A+ ++ L D ++ + Sbjct: 380 KQNEELLRRTEKLSVIGELAASIAHEIRNPLTALKGFIQYLRPTLSGGATYTDIMLSELD 439 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKID 110 + L + + + + + +E + + Sbjct: 440 RINFIVSELLVLAKPQTLNVKRILLHPLIESVVKFLESEANRNNTSINTIFSDIPIAIKG 499 Query: 111 LSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++ +NL + + G + N+ NG E ++ + Sbjct: 500 EENQVKQVFINLLKNSLDAITSNGTISIETTCLPNNQVRIRFTDNGCGI-SQELLPRLGE 558 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +++ + + + + Sbjct: 559 PFYTTKEKGTGLGLLVSNKIMKDHQGTINISSEVNKGTTVEIMFP 603 >gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 774 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 67/245 (27%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 AK+ + + + + + H+I +P+ AI E+L + ++DE + + + Sbjct: 251 AKSEAMAVEAAKGTRAKSQFLAAMSHEIRTPMNAILGMAEILADSHLDDEQRRFVEILQE 310 Query: 59 SAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVD-------KRVQV 102 S L + + D + + A + Sbjct: 311 SGESLLHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKGLELAYNINR 370 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG--------KVTISVQDSKNENIFSLKIN 154 + + +I +NL A RG + ++ + F++K + Sbjct: 371 DVPVQLMGDPSRLQQIFVNLIGNAIKFTERGFVVVETSLVQPDMADNGGSLKIHFAVKDS 430 Query: 155 GNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + F + + + L ++ E + Sbjct: 431 GIGIEDDKLDSIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLESRKGFGTTV 490 Query: 210 SALLE 214 L Sbjct: 491 HMELP 495 >gi|124383088|ref|YP_001023999.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229] gi|126447644|ref|YP_001078619.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247] gi|254356639|ref|ZP_04972914.1| sensory box histidine kinase [Burkholderia mallei 2002721280] gi|124291108|gb|ABN00378.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229] gi|126240498|gb|ABO03610.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247] gi|148025666|gb|EDK83789.1| sensory box histidine kinase [Burkholderia mallei 2002721280] Length = 821 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 580 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 636 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 637 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 696 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 697 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 755 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 756 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 807 >gi|115373547|ref|ZP_01460843.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310825046|ref|YP_003957404.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115369389|gb|EAU68328.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309398118|gb|ADO75577.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 675 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 57/237 (24%), Gaps = 28/237 (11%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSL----------------ELLDE-VGI 45 + S L L + + H+I +P+ + ++ E++ E Sbjct: 295 REKLIQSEKLAVAGQLAAGVGHEINNPLSFVMGNIHFAVEQLAALAEVASPEVIQETEEA 354 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVS 103 E + F R VD L + + Sbjct: 355 LHEAREGAERIRRIVRDLKTFARGDDAQLRPVDVHAALEFSLSMAMNHVRYRAQVVRCYG 414 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR 159 ++ LNL + A ++P G + ++ + + G Sbjct: 415 TVPPVWANEARLGQVFLNLLINAAQAIPEGDVAQHRILLTTYVQEDRVVVDVTDTGMGM- 473 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE + + + + + + + + +L Sbjct: 474 SPEVLARAFEPFFTTKSQGEGTGLGLSICHGIIKALRGEMSAASTPGKGSTFRVMLP 530 >gi|94269593|ref|ZP_01291503.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451157|gb|EAT02080.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 478 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 + + L LVAL + + + H++ +P+ +I LL + ++ Sbjct: 248 RREMEKELQKNQQLVALGKMAAGVAHEVRNPLSSIKGLATLLGGRFAADDRDHDTARLLI 307 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106 + + S L + R ++D L D +++E + + + Sbjct: 308 NEVERLNRSIGELLDYARPLPLDRRAIDLNELLRDSLKLVESDASRQGVKLEFTPAAGQP 367 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 I ++LLNL++ A ++P GG + ++ + +G PE Sbjct: 368 RPILDRDRLLQVLLNLYLNALQAMPAGGTLQLTATVQGGLVRLWVGDDGQGI-APEHLKV 426 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214 + D + + + V + +E+ RL + L Sbjct: 427 VTDPYFTTKPEGSGLGLAMVQKIINEHGGRLWLTS-PGKQRGTTVEIELP 475 >gi|182440353|ref|YP_001828072.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326781021|ref|ZP_08240286.1| integral membrane sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|50058179|dbj|BAD27459.1| putative sensor kinase [Streptomyces griseus] gi|178468869|dbj|BAG23389.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661354|gb|EGE46200.1| integral membrane sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 499 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 17/209 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMRLAFG 72 + H++ +PI + LEL+DE + +R ++ + R F Sbjct: 259 VAHELRTPITVLRGHLELMDEDPDSRHGQTRALLFDELDRMRRIVDDLLLLARAERPDFL 318 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 G + D + V + + L+ L + A + Sbjct: 319 TLGQTSLTDLVVDTAAKAQALGRRHWTVAEVADVSVHLDEQRVTQALMQLAVNAVSHTGE 378 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-------STIDSHDIQFYY 185 G + I + + + + G PE +I + + Sbjct: 379 GDAIEIGSRLWRGRVVLWVADTGPGV-APEDRERIFQCFYQGGTAVPGRAAPGIGLGLAL 437 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V +A + E L Sbjct: 438 VREIAQAHDGVAHVEEAPGGGARFVIDLP 466 >gi|42523783|ref|NP_969163.1| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100] gi|39575990|emb|CAE80156.1| unnamed protein product [Bdellovibrio bacteriovorus HD100] Length = 713 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 58/236 (24%), Gaps = 25/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58 AK+ S + +R+ H+I +P+ ++ LELL E ++ + L + Sbjct: 314 AKDQAEEASRAK--SEFLARMSHEIRTPLNSVLGMLELLRETQLSKDQERYLTLFSHAGE 371 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------------AVDKRVQVSWT 105 + + + ++ + + + + Sbjct: 372 NLKALINDLLDFSKIEAKALTVENVSYNIHSTVRSVFDILQIKAEEQGLHFELHISKDVP 431 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEK 163 + ++L NL A G + + ++ G + Sbjct: 432 PLQWGDPTRLRQVLFNLIGNALKFTNEGSVKVKLELTKDAPEQLLIEVQDTGIGIPRERQ 491 Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + L + + + LL Sbjct: 492 SKLFSSFAQGDPTIARKYGGTGLGLVISKNLVEIMGGTMEMKSLAGRGTTFKILLP 547 >gi|228937637|ref|ZP_04100274.1| hypothetical protein bthur0008_3170 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228977095|ref|ZP_04137497.1| hypothetical protein bthur0002_3150 [Bacillus thuringiensis Bt407] gi|228782631|gb|EEM30807.1| hypothetical protein bthur0002_3150 [Bacillus thuringiensis Bt407] gi|228822011|gb|EEM68002.1| hypothetical protein bthur0008_3170 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 369 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHIQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G +K +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENDKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367 >gi|254525199|ref|ZP_05137254.1| histidine kinase-response regulator hybrid protein [Stenotrophomonas sp. SKA14] gi|219722790|gb|EED41315.1| histidine kinase-response regulator hybrid protein [Stenotrophomonas sp. SKA14] Length = 503 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 65/227 (28%), Gaps = 16/227 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59 + ++ ++LL + + HD+ + + + +LL E + +I Sbjct: 140 ETELMRAQRLESLSLLAAGLSHDLRNILQPLLIMPDLLKARTEDPQLHHLADVIAECGRR 199 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LS 112 + M + I + + + + + V + D Sbjct: 200 GHEMAESMLSFVRGSRKPSERIEIDGLFDAVALLLRSNVPDAVRLELQVQDEGLVVDANY 259 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQI 167 E +++LNL + A ++P GG++++ + + G + + + Sbjct: 260 TELQQVMLNLALNAIQAMPNGGRLSLIASHAGQRDGVDWMHIRVADEGIGM-DADTLSHL 318 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + + L Sbjct: 319 FNPFFTTKADGTGLGLMSCKRIVEGAGGSIHVSSQPGQGTCFELRLP 365 >gi|196046814|ref|ZP_03114036.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|229182902|ref|ZP_04310135.1| hypothetical protein bcere0004_4810 [Bacillus cereus BGSC 6E1] gi|196022349|gb|EDX61034.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|228600526|gb|EEK58113.1| hypothetical protein bcere0004_4810 [Bacillus cereus BGSC 6E1] Length = 392 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 170 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 229 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + I + + ++V + ++++ Sbjct: 230 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 289 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 290 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKREDIPKLFDRFYQGDKARSTS 349 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E +L K Sbjct: 350 EGAGLGLSIANWIVEKHYGKISVESRWGEGTCFEVILPK 388 >gi|158333452|ref|YP_001514624.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158303693|gb|ABW25310.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 788 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 25/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 + K N +L + + H+ +P+ I +S ELL+ + + + + I+ Sbjct: 557 LNKERELN----ELKSRFVAMTSHEFRTPLATILSSAELLEHYGHKWDETRKLKHLSQIQ 612 Query: 55 LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S L + + GL + Q+ + R+Q Sbjct: 613 QSVDHMTGLLNDVLLLGKAESGNLAFNPVPMQLTEFCTGLAEELQITTQTHEIVCRLQEQ 672 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 T ++D I NL A P+GG + + +E I ++ +G E Sbjct: 673 LTEVQMDEKL-LRHIFTNLLSNAIKYSPQGGIINFDLVFESDEAILKVQDHGLGIPPSEC 731 Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 N + + + V + + + + + L Sbjct: 732 SHVFNSFNRATNVGNISGTGLGLAIVKRSVDLHGGEITLTSQETVGTIFTVRLP 785 >gi|126442556|ref|YP_001062929.1| two-component sensor kinase protein [Burkholderia pseudomallei 668] gi|126222047|gb|ABN85552.1| two-component sensor kinase protein [Burkholderia pseudomallei 668] Length = 723 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|121597261|ref|YP_990084.1| sensory box histidine kinase [Burkholderia mallei SAVP1] gi|238563116|ref|ZP_00439398.2| sensory box histidine kinase [Burkholderia mallei GB8 horse 4] gi|251766917|ref|ZP_04819875.1| sensory box histidine kinase [Burkholderia mallei PRL-20] gi|254176051|ref|ZP_04882709.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399] gi|254200388|ref|ZP_04906753.1| sensory box histidine kinase [Burkholderia mallei FMH] gi|254204412|ref|ZP_04910765.1| sensory box histidine kinase [Burkholderia mallei JHU] gi|254301655|ref|ZP_04969099.1| sensory box histidine kinase [Burkholderia pseudomallei 406e] gi|121225059|gb|ABM48590.1| sensory box histidine kinase [Burkholderia mallei SAVP1] gi|147748000|gb|EDK55075.1| sensory box histidine kinase [Burkholderia mallei FMH] gi|147753998|gb|EDK61062.1| sensory box histidine kinase [Burkholderia mallei JHU] gi|157810685|gb|EDO87855.1| sensory box histidine kinase [Burkholderia pseudomallei 406e] gi|160697093|gb|EDP87063.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399] gi|238521351|gb|EEP84803.1| sensory box histidine kinase [Burkholderia mallei GB8 horse 4] gi|243064372|gb|EES46558.1| sensory box histidine kinase [Burkholderia mallei PRL-20] Length = 821 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 580 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 636 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 637 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 696 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 697 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 755 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 756 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 807 >gi|118476260|ref|YP_893411.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118415485|gb|ABK83904.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 416 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + I + + ++V + ++++ Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKREDIPKLFDRFYQGDKARSTS 373 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E +L K Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESRWGEGTCFEVILPK 412 >gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1853 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 61/240 (25%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55 +++ + L++ + + H++ +P+ ++ ++L + + E ++ Sbjct: 1440 RSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTVEQVKFAST 1499 Query: 56 SSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 S + SV + + R Sbjct: 1500 VYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQVR 1559 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + +IL NL A RG V + F+++ G Sbjct: 1560 MAPDLPDRIHTDPTRLQQILKNLISNAFKFTERGEVVLEVSPAAGGALAFAVRDTGIGIP 1619 Query: 160 FP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Q DG + +A + E V + +L Sbjct: 1620 ADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLP 1679 >gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] Length = 594 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 69/227 (30%), Gaps = 24/227 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 L + + H++ +P+ +I ++ + + + +I+ + + +K Sbjct: 367 EQLRKEFVANVSHELKTPLTSIIGYIDTIIDNDIKDDTTIKRFLSIIKDEADRLYLLIKD 426 Query: 67 M--------RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWT---GEKIDLSRE 114 + + D + + E + D +++ + + Sbjct: 427 LLDLSKLEAKRGEVILQPGDLNKIVKKIYLMLQEQAESKDIDLKLDIKEKLPFVYLIPEQ 486 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ++L+NL GG+V + + N + ++ NG E +I + Sbjct: 487 IEQVLINLVDNGIKYTEPGGRVILRAYEENNRVVVEVEDNGIGI-PEEDQGRIFERFYRV 545 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ I V + + + E + L K Sbjct: 546 DKARSRSMGGTGIGLSIVKHIIKNHDSEIKVESEPGKGSLFRFYLNK 592 >gi|147669545|ref|YP_001214363.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1] gi|146270493|gb|ABQ17485.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1] Length = 1262 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52 + S L A+ + + I H+I +P+ + +L E + +Q+ Sbjct: 884 EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPADVMDELQI 943 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSW 104 I S + +K M V L V++ R Sbjct: 944 INSGSQRVVEIVKRMLTFARQAKPVRSSVNITELIDNTLDLRSYVLKTANIEVVRHYEPE 1003 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161 S + +++LNL + A S+ + + TI V+ S + NG Sbjct: 1004 LPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGILTIRVKKEGEWVRMSFQDNGLGM-ST 1062 Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + + ++ + E I + L Sbjct: 1063 ETLGKLFQPFFTTKDPGEGTGLGLSLSHGIILAHEGTIRGESILGEGAEFTIELP 1117 >gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 642 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + I LS + L + + H++ +P+ I +ELL + EV+Q Sbjct: 389 EQILTTLSDLSLANQRKDEFLAMLAHELRNPLAPIRTGIELLRIAADDPEVLQETIEVMD 448 Query: 59 SAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + ++ G +D L ++ VI+ + + + E Sbjct: 449 QQSRQLVTLVDDLLDVSRIARGKIDLRHDLINLADVIDQAVTASRPLLDDANHEFHVELP 508 Query: 114 ERA-----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ NL A PRGG+V + VQ N +++ G Sbjct: 509 DCPLQVQGDSRRLVQVVSNLLNNAAKYTPRGGRVDLIVQPEPNRIGIAIRDTGIGI-PEH 567 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 +I + I V L H + + + LL Sbjct: 568 MRERIFELFTQVDERQHDRYSGLGIGLTLVRTLVHLHNGEIQVHSDGQGQGSTFTVLLP 626 >gi|304383610|ref|ZP_07366069.1| DNA-binding response regulator/sensor histidine kinase [Prevotella marshii DSM 16973] gi|304335134|gb|EFM01405.1| DNA-binding response regulator/sensor histidine kinase [Prevotella marshii DSM 16973] Length = 901 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 57/233 (24%), Gaps = 19/233 (8%) Query: 1 MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + + L M L + I H+I +P+ I + + ++ + Sbjct: 375 LRRRNHILLKKMSTLRENFFTNITHEIRTPLTVILGLSRDITAADDTPDDLKEKSRTIER 434 Query: 60 A--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSW 104 L ++ + + + + + Sbjct: 435 QGSQLLTLINQLLDISKMKSAVGDPDWQSGNIVAQIGMTVESFRAYANSRNITLQYVNDG 494 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 E ++ K++ NL A P G+VT++V S+ G Sbjct: 495 DVETNFVADYINKVMNNLLSNALKFTPEYGEVTVNVFHRDGLLHLSVADTGCGIDANNIT 554 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F G + V + + + + D L Sbjct: 555 HIFEPFYQGTASGHTGGTGVGLALVKQIVDTLGGTISVDSVPDSGTTFHITLP 607 >gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 777 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 67/248 (27%), Gaps = 33/248 (13%) Query: 1 MAKNICFNLSSMDLVA-----------LLCSRICHDIISPIGAIHNSLELLDE------- 42 M K + ++ + + H++ +P+ AI E+ E Sbjct: 257 MLKRLRLAQQELEQARTAAEAASEAKAQFLANMSHELRTPLNAIIGYSEMTQEDIAAGNT 316 Query: 43 -------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 I + L+ + + I + D L D+ ++ + Sbjct: 317 QSVQQDLEKINKAGLHLLSIVNDILDISKIEAGKMDLFLEDFDITQLLHDVVAIMTPLME 376 Query: 96 VD-KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + Q+ + + + ++ K+ L + + + I+V+ + + ++ Sbjct: 377 KQGNQFQLVLSPDIGMMHADQTKVRQILINLLSNATKFTHQGEITVEVQNHGEHIVVSVH 436 Query: 155 GNLA-RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 PE+ ++ + H + E Sbjct: 437 DTGIGMDPEQVDRLFKAFTQADASTTRKYGGTGLGLSISQHFCHMMGGSIRVESTPGKGS 496 Query: 208 VLSALLEK 215 + L + Sbjct: 497 HFTVQLPR 504 >gi|229148746|ref|ZP_04276996.1| hypothetical protein bcere0011_3180 [Bacillus cereus m1550] gi|228634754|gb|EEK91333.1| hypothetical protein bcere0011_3180 [Bacillus cereus m1550] Length = 369 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 75/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55 M + + + + + I H+I +P+ A+ ++ E D + +Q I Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDL 111 + + + + L + ++E + V +QV Sbjct: 205 INGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367 >gi|213646010|ref|ZP_03376063.1| phosphate regulon sensor protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 233 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 66/215 (30%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ + LE++ E +E + + R++ + ++ Sbjct: 11 ANVSHELRTPLTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEV 70 Query: 80 LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 L E+V + V + + + + NL Sbjct: 71 APALLLNEKVDVPMMLRVVEREAQTLSQQKHTFTFAVDDSLSVLGNEEQLRSAISNLVYN 130 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+S + + + F ++ NG E ++ + Sbjct: 131 AVNHTPAGTHITVSWRRAAHGAEFCIQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 189 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ RL + S +L Sbjct: 190 GLGLAIVKHALNHHESRLEIDSSPGKGTRFSFVLP 224 >gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1145 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 66/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54 + +L L L + H++ +PI I E + D + + LI Sbjct: 459 LTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQDLTEGQQNQLGLII 518 Query: 55 LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S+ + + + V S + + + + + V + Sbjct: 519 KSADGLARLVDDLLDYHQMRYGQLEIHPQPVASKGVIRLVLDLCQHLVQAKPLTLVDISP 578 Query: 107 EKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159 ++ + +++ NL A P+ GKV +S N + G Sbjct: 579 AELPPVLADEQRLEQVIYNLVGNAIKYTPQ-GKVVLSALVEGNFLRIRVTDTGIGIAKDH 637 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F +V + E + + L H L E + L Sbjct: 638 LEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLP 692 >gi|156742948|ref|YP_001433077.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234276|gb|ABU59059.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1234 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 19/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQ 51 + + L AL L + H++ +P+ I +L L +++ + Sbjct: 866 LRRLEAQVRQHEKLAALGRLVAGAAHELNNPLAVILGLSQLQLGEDIPLSVRADLEQIER 925 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKID 110 R ++ F + +D + + + Q + A V V + Sbjct: 926 AARRAAAIVHQLRAFGQPRALELVPLDLSLVIDETLQRLASRIAAEHIAVTVDLPPDLPR 985 Query: 111 LSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + E +I +F +A ++ + S ++ + + +++ G Sbjct: 986 VLGELHQIEQVVFNIALNAVQALALRLPGEPRHLRFSAREDSDSVVLTIEDTGPGIAPEH 1045 Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + +++ + E V L + Sbjct: 1046 LSRVFEPFFTTRDVGQGMGMGLAVVYSIMQQHRGEVWVESSQGVGTVFRVRLLR 1099 >gi|119944598|ref|YP_942278.1| sensor histidine kinase PAS domain-containing protein [Psychromonas ingrahamii 37] gi|119863202|gb|ABM02679.1| sensor histidine kinase, PAS domain [Psychromonas ingrahamii 37] Length = 599 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 62/220 (28%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + H++ +PI I E + + E M+ + + + + S Sbjct: 379 FVANASHELKTPITVILGLAETILDYKDMPENMRTRFMGDIQTQTLRLSSLVTDLMSISR 438 Query: 78 -----------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L +++ + + E +++ Sbjct: 439 LETTQNGVMTETVDLTASVKNALSNVDNICREKKITLSNRLPKGEMLINGDKEEINQLID 498 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P G V+++++ + +K G +I + Sbjct: 499 NLIGNAIKYTPSLGHVSVTLKALDEQAQIIVKDTGIGISLSH-QQRIFERFYRVDKARSR 557 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++K + I++H + LL Sbjct: 558 DLGGTGLGLSIVKNIVEKHKGTISVSSIENHGSTFTLLLP 597 >gi|113969135|ref|YP_732928.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883819|gb|ABI37871.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1118 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 56/214 (26%), Gaps = 21/214 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------------ 69 + H+I +P+ AI ++L E ++ E + + + SA + + Sbjct: 550 MSHEIRTPMNAIIGFSDILLESVLDTEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKL 609 Query: 70 --AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMV 125 D + + + + V ++ + I ++L+NL Sbjct: 610 ELENRVFCLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGN 669 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHD 180 A G + N F + G + D ++ Sbjct: 670 AVKFTCEGKVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTG 729 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L +L E + Sbjct: 730 LGTTISKQLVELMGGQLEAESTLGQGSTFRFTIP 763 >gi|167906877|ref|ZP_02494082.1| two-component sensor kinase protein [Burkholderia pseudomallei NCTC 13177] Length = 709 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584 Query: 117 ----KILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRSKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695 >gi|229541696|ref|ZP_04430756.1| histidine kinase [Bacillus coagulans 36D1] gi|229326116|gb|EEN91791.1| histidine kinase [Bacillus coagulans 36D1] Length = 420 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 64/220 (29%), Gaps = 20/220 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM--- 67 S H+I +P+ I + +ELL E + + + + + Sbjct: 188 TQFVSDASHEIRTPLAVIQSRVELLLRKPNETVRDVLQDISTVLNECRRLTKLVSNLLTL 247 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + L + D + ++ + +++ Sbjct: 248 ARSDSDKIEIERKPFYLDELLREIMDHFSELAAIQGKTLILKSAPPVTFSGDRDRIHQLI 307 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----EST 175 + L A GGK+ ++ +SKN S++ NG + ++ + Sbjct: 308 VILLDNAMKYTGDGGKIELACFESKNHVGISVQDNGIGLKEEDREKIFDRFFQVSKSRTK 367 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +S + + ++ ++ + + K Sbjct: 368 TESLGLGLSIAKWIVEKHSGKIRVDSKLGEGTTFTITFPK 407 >gi|148263612|ref|YP_001230318.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397112|gb|ABQ25745.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 520 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 51/216 (23%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + S + H++ +P+ A+ EL+ + ++ +L + + Sbjct: 302 MLSAVSHEMRTPLTALMGYTELMLTNELSMPQLKEYLKVIQREADKLNELIGNYLDIQRQ 361 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------------KILLNLF 123 + V + + + + ++L L Sbjct: 362 KASRSTAGFRPVNIRPLMEETADLFGAASRNHRIIVDCPVDLAPVLGDEKLLRRMLEMLV 421 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178 A P GG+V + ++ G E Sbjct: 422 SNAVKFSPNGGEVCLGASMEAGNITILVRDQGVGIPAEELEHIFELFYRVDNTDRRMFGG 481 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + R+ E L Sbjct: 482 IGLGLALVKEIAIGHGGRVWAESSIGKGSAFYVSLP 517 >gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 926 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 57/229 (24%), Gaps = 26/229 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLK 65 S L + H+I +P+ I ELL E ++ DE ++LI S + + Sbjct: 554 ESDRLKTCFLENMSHEIRTPMNGILGFSELLKEPLLDGSKKDEYIELIHQSGKRMLSIIN 613 Query: 66 FMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------- 113 + + F R + Sbjct: 614 DLIDISKIEAGEIAIQYTEASLDKIFHDLQAFFEPQATRKGLLLHCTGCVPPSASVIVTD 673 Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +IL NL A G + + + F ++ G +I D Sbjct: 674 KSRLVQILTNLVQNALKYTASGE-ICFGCTKNGDFLDFYVRDTGIGI-PDFLTEKIFDRF 731 Query: 172 VE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L R+ + V S L Sbjct: 732 RQAQVDPVREYEGVGLGLSISKSLVELLGGRIGVQSSAGEGSVFSFSLP 780 >gi|317132096|ref|YP_004091410.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] gi|315470075|gb|ADU26679.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] Length = 452 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + +N + + L S I HD+ +P+ +I LE + + G+ + S Sbjct: 210 LQENERLKIEYENNRKALISNISHDLKTPMTSIQGYLEAITADAGMPADRQARYLKIIQS 269 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------------V 102 + + ++D V D + + Sbjct: 270 NSAYMNRLIDDLFLFSTLDLQKLEFHFAPVSIRPFLRDMMEEFRLDLEERGALFRYEDAL 329 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161 + +IL NL A P+ G V + + ++K NG Sbjct: 330 DREYTVDLDPKRFHQILRNLIGNAVKYGPKQGLAVRVKAYVIEENLRLAVKDNGQGIPAK 389 Query: 162 EK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + S + LA + ++ + + + Sbjct: 390 DLPHLFERFYRADPERTKDFSSTGLGLAIAQELAQAHGGKITVASEINAGSCFTVSIP 447 >gi|229172567|ref|ZP_04300126.1| hypothetical protein bcere0006_16790 [Bacillus cereus MM3] gi|228611038|gb|EEK68301.1| hypothetical protein bcere0006_16790 [Bacillus cereus MM3] Length = 288 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50 MAK++ ++ + + + S I HD+ +P+ ++ +LL + E V Sbjct: 46 MAKSLKESIENEKKSQEMKTEMISNISHDLRTPVTSLIGYADLLGNQLHSNREECEQSVS 105 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100 L R S + ++ + +++ IE + + R+ Sbjct: 106 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPLLDDADMSFRI 165 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++ N+ + G + I V +K G Sbjct: 166 NGDKELHVEIDVAVMVRLFENVISNSIMYGKDGKDILIQVSKRDMNAEIEIKNFGQCIPD 225 Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + G + +A +K + + V + +L Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIVLP 283 >gi|206967740|ref|ZP_03228696.1| sporulation kinase [Bacillus cereus AH1134] gi|229188614|ref|ZP_04315653.1| hypothetical protein bcere0002_3090 [Bacillus cereus ATCC 10876] gi|206736660|gb|EDZ53807.1| sporulation kinase [Bacillus cereus AH1134] gi|228594803|gb|EEK52583.1| hypothetical protein bcere0002_3090 [Bacillus cereus ATCC 10876] Length = 369 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D+L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367 >gi|227819916|ref|YP_002823887.1| two component sensor-kinase [Sinorhizobium fredii NGR234] gi|36958717|gb|AAQ87185.1| Sensory Transduction Protein Kinase [Sinorhizobium fredii NGR234] gi|227338915|gb|ACP23134.1| two component sensor-kinase [Sinorhizobium fredii NGR234] Length = 1333 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 59/240 (24%), Gaps = 30/240 (12%) Query: 2 AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQL 52 L+ L + L + I H++ P+ A+ + E +Q Sbjct: 1090 RAEEKLRLAQESLARASQAASLSELSASIAHEVNQPLAAVVANSHACQRWLTAEPPNLQR 1149 Query: 53 IRLSSMSAII--------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + + + K + + ++ V Sbjct: 1150 AQRTVERIVRDANSAADVVSRIRALFKQSIGTRINAALASVISEVRNLLADEAARRRVRI 1209 Query: 99 RVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKIN 154 +++ + ++L+NL ++ + + + + Sbjct: 1210 DLKIDGDLPPIAIDHIQIQQVLINLIRNGMEAMGSLAGDRVLGMRASYIGDVVQTEISDL 1269 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G E ++ + + D + + + RL E + H L Sbjct: 1270 GPGI---EFPDRVFEPFFTTKKDGMGMGLAICRSIVELHGGRLWAEKNEPHGAKFIFTLP 1326 >gi|34498900|ref|NP_903115.1| two-component sensor [Chromobacterium violaceum ATCC 12472] gi|34104749|gb|AAQ61106.1| probable two-component sensor [Chromobacterium violaceum ATCC 12472] Length = 381 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 16/220 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 L ++ + + + H + +P+ + L + E S++ + L+ + Sbjct: 159 QQQKLASMGSMAAALAHQLRTPLASAMLYTANLKQDIPRPEDRARFVDKSLARMRALEGL 218 Query: 68 RLAF-----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 L + + V + L +A Sbjct: 219 IQNMLGFVRGQVSSLEKAPLEPLLEDVCAVLAPQCHDKGVFFDCNLPADSAITVLIDRKA 278 Query: 117 K--ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 L+NL A GG+V ++V + +F ++ +G +I + Sbjct: 279 LQGALINLLENALQFASPGGRVGLAVASDGADVVFCVEDDGPGI-DEAVRERIFEPFFTQ 337 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A E + L Sbjct: 338 RPGGTGLGLAIVKKVAEELGGSVRCYNKVAGGACFELRLP 377 >gi|27366581|ref|NP_762108.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6] gi|27358147|gb|AAO07098.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6] Length = 970 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + G+ + + + S Sbjct: 458 AKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQKRYADIINRSGK 517 Query: 62 IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ +S L + + + ++ Sbjct: 518 NLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVN 577 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A +G + +N F + G E+ Sbjct: 578 HYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQ 637 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + + ++ + + Sbjct: 638 ATLFDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVP 692 >gi|49474327|ref|YP_032369.1| sensor histidine kinase [Bartonella quintana str. Toulouse] gi|49239831|emb|CAF26224.1| Sensor histidine kinase [Bartonella quintana str. Toulouse] Length = 829 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/243 (8%), Positives = 60/243 (24%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 M ++ M V L I HD + + AI S + L + I+ + Sbjct: 440 MLEDKIMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNMHRSSDPAYADLINIKNN 499 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109 + A ++ + + ++ I + K + Sbjct: 500 ANRAAALVQQLLAFSRKQTLRPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSVE 559 Query: 110 DLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154 ++++NL + A ++ + + ++ Sbjct: 560 VDQASFQRVIINLVINARDAMSEGGVVTIATNNITKQQSAEFDNVGFAIGEYVQLTISDT 619 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G ++ + + + V + + + + + Sbjct: 620 GTGISAA-VQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSREGEGATFHIF 678 Query: 213 LEK 215 L + Sbjct: 679 LPR 681 >gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] Length = 1522 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 55/239 (23%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57 + + + + + H++ +P+ AI L LL G++ + S Sbjct: 757 LKTAREAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAVKSEAAT 816 Query: 58 ----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSW 104 L F ++ G + + + + V + S Sbjct: 817 RTLLRLLNDILDFSKIESGKMELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSL 876 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 S +IL NL A I+ F ++ G Sbjct: 877 PQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGI-A 935 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE I G + L E + L Sbjct: 936 PENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLESQPGQGSLFHFTL 994 >gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 995 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK ++ + S++ H++ +P+ I +LL+ +E + +S Sbjct: 258 AKEEAEKVNMAK--SSFLSKMSHELRTPLNGILGFAQLLEMDESLNEQQRDFAQEILSGG 315 Query: 62 IRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L + ++ + I V + + + Sbjct: 316 SHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPLAKKKNISIYSQLDQWE 375 Query: 109 ID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +ILLNL A GKV + + +N+ + G E + Sbjct: 376 DMIVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQENKQYIHIVDTGVGFSVEE-Y 434 Query: 165 TQIVDGNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ + + I V L H + L Sbjct: 435 TKVFVPFYRIESTKEEGTGIGLSLVKQLVHLMGGEINVTSNKGTGSEFCFSLP 487 >gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 706 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 63/241 (26%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQL 52 M + + + + + H+ +P+ AI +L + + + ++ Sbjct: 462 MLRRQAIQVEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGELNPAQKRNLTRI 521 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105 + + + + G + + I +++++ +A + Sbjct: 522 DSNGRHLLEVINEILDITRIEAGRMPLNLSDFGIPELLQEVMAEMDPIIARSKLTVSAHL 581 Query: 106 ----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF 160 ++ +I+LNL A G + + S+ G Sbjct: 582 GPRVPAVYSDRQKVKQIVLNLLSNALKFTHEGSVQVQAEYVAATSTLTISVTDTGIGI-D 640 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P +I + + LA R+ + + Sbjct: 641 PANQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRVTLQSTQGEGSTFTLHFP 700 Query: 215 K 215 + Sbjct: 701 R 701 >gi|320638850|gb|EFX08496.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. G5101] gi|320644218|gb|EFX13283.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H- str. 493-89] gi|320649537|gb|EFX18061.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H- str. H 2687] gi|320654933|gb|EFX22894.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660440|gb|EFX27901.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O55:H7 str. USDA 5905] gi|320665710|gb|EFX32747.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O157:H7 str. LSU-61] Length = 753 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 505 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|320354830|ref|YP_004196169.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123332|gb|ADW18878.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 946 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 59/234 (25%), Gaps = 30/234 (12%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMS 59 + + A+ L I HD + +G I ++ + + ++ Sbjct: 571 QAQKMEAIGTLAGGIAHDFNNILGGIIGFTDMALLQCAPGTELHSNLLHIRQGGKRAADL 630 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 L F R + V + + +++ + ++ + +I Sbjct: 631 VQQILTFSRQSAEEKSPVVVAALIQESLKLMRATLPATIDIKQELWENTAKVMAAPVQIQ 690 Query: 120 LNLFMVAHASLPRGGKV-----------------TISVQDSKNENIFSLKINGNLARFPE 162 + + + + ++ + ++ G E Sbjct: 691 QIVMNLCANAFYSMKEKGGRLTLRLRRKRAAELGKTGDHEAGDWLALVVEDTGQGM-ENE 749 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + + + V + LL Sbjct: 750 TLQRIFTPFFTTKKPGEGTGMGLSVVHGIVRDLGGEITVRSQPEEGTVFTVLLP 803 >gi|312149029|gb|ADQ29100.1| sensory transduction histidine kinase, putative [Borrelia burgdorferi N40] Length = 382 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 20/227 (8%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAII 62 + ++ I H+I +P+GAI +L+LL + + ++ ++ Sbjct: 146 RVEALASFTRHARNIAHEIKNPLGAIDINLQLLKKEIEKQKMKNGKAENYFKVIKEEINR 205 Query: 63 RLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 K + + + D E + ++ ++ L E Sbjct: 206 VDKIVTEFLLTVRPIKINLQEKDIKQVIGSVCELLNPGLENKHIKLLLNLNKISNILIDE 265 Query: 115 R--AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++++N+ A +L K+ I + + N+ ++K NGN E +I Sbjct: 266 KLLKQVIINIVKNAEEALLETKKEIKKIEIFLFEKDNKIHINIKDNGNGI-KDEVKEEIF 324 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + E + E + + + L K Sbjct: 325 KPQFSTKEKGSGIGLTISYKIIKELGGEIFVESKEGKGTIFTITLPK 371 >gi|300118430|ref|ZP_07056176.1| sensor histidine kinase [Bacillus cereus SJ1] gi|298724215|gb|EFI64911.1| sensor histidine kinase [Bacillus cereus SJ1] Length = 436 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGINEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|293417597|ref|ZP_06660219.1| histidine kinase [Escherichia coli B185] gi|291430315|gb|EFF03313.1| histidine kinase [Escherichia coli B185] Length = 753 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDVSQL 505 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|262279365|ref|ZP_06057150.1| signal transduction histidine kinase [Acinetobacter calcoaceticus RUH2202] gi|262259716|gb|EEY78449.1| signal transduction histidine kinase [Acinetobacter calcoaceticus RUH2202] Length = 369 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 28/238 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + L + H+I +P+ I + +LL + + + Sbjct: 126 SKEENLVQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDKTYAEFTDVIINEVDR 185 Query: 63 RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 G V+ L + +I + ++ + D++ +R + Sbjct: 186 LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKIIRDYDLSLPDVNADRDQ 245 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN---------------------ENIFSLKINGN 156 ++ + ++ ++ + D + ++ NG Sbjct: 246 LIQVMLNISVNAIQAITENKAFFIDQEPELILRTRIQRLVTINGVLNRSTVRVDIEDNGP 305 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + H++ + + + + S L Sbjct: 306 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TIFSLYLP 361 >gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341] gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341] Length = 969 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 55/234 (23%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL E + +++ + S Sbjct: 457 AKARYQAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105 L + Y+ + + + + + + + Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQSHFDLYRLVRETHELMQSRALEKGITLSYQIDENVS 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++L NL + + + F+++ +G ++ Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGQVCIRVRFDTQSGGLCFAVEDSGIGIAEQDQV 636 Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L L L Sbjct: 637 SLFDAFTQAEAGRRKQGGTGLGLAISRKLVEAMGGELQLSSQLGQGSCFYFTLP 690 >gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 460 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 62/228 (27%), Gaps = 23/228 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------- 62 + + + H++ +PI I E L +E +S + + Sbjct: 218 QMEKMRRDFVANVSHELRTPITIIKGYAETLLAGALEHPTQATKFVSIVHSHADRLASLV 277 Query: 63 -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLS 112 + A + + + V+ + ++ + V + Sbjct: 278 SDLLTLSQLESGAVPLEARSVKVQEIAERVVVLLERKIRERGIIVDLAGLKDAPSVMADP 337 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 ++++NL A P GG VT+S D + +++ G + F + Sbjct: 338 GRLEQVIVNLLDNAVKYTPAGGSVTLSAADREESVTIAVQDTGIGIPSKDLSRIFERFYR 397 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + + L + Sbjct: 398 VDSARSRDEGGTGLGLSIVKHIVQLQGGTVSAQSS-GQGSTFFVTLNR 444 >gi|186683296|ref|YP_001866492.1| Chase sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186465748|gb|ACC81549.1| Chase sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 441 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 59/231 (25%), Gaps = 24/231 (10%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSM 58 LS + L S + H+ +P+ I S +LL + + + + I+ S+ Sbjct: 199 QEKELSELKLR--FFSMVSHEFRTPLSIILGSAQLLAQSNQQWTEEKKLKNLYRIQSSAR 256 Query: 59 SAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 S + +D ++ + + ++ G Sbjct: 257 SINQLLTDILTLTRAEAGKLEFHPELIDLEAFCINLIEDFQFSNQQQHTIKFISQGNCTH 316 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + L A P + + + + F +K NG E + Sbjct: 317 AKLDENILYSVLSNLLSNAIKYSPPEESIFLILSCESSAIFFQVKDNGIGIPC-EFQEHL 375 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + V + + + + Sbjct: 376 FEPFHRANNVGKIVGSGLGLAVVKKCLEIHHGEIYVDSEVGGGTSFTIKFP 426 >gi|332998333|gb|EGK17932.1| aerobic respiration control sensor protein arcB [Shigella flexneri VA-6] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|332752371|gb|EGJ82761.1| aerobic respiration control sensor protein arcB [Shigella flexneri 4343-70] gi|333000305|gb|EGK19888.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-218] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|327251301|gb|EGE62990.1| aerobic respiration control sensor protein arcB [Escherichia coli STEC_7v] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|324018338|gb|EGB87557.1| PAS domain S-box [Escherichia coli MS 117-3] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|323979073|gb|EGB74151.1| hsp90-like protein [Escherichia coli TW10509] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|323951271|gb|EGB47146.1| hsp90-like protein [Escherichia coli H252] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|323936096|gb|EGB32390.1| hsp90-like protein [Escherichia coli E1520] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|320661959|gb|EFX29367.1| aerobic respiration control sensor protein ArcB [Escherichia coli O55:H7 str. USDA 5905] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|320174576|gb|EFW49712.1| Aerobic respiration control sensor protein arcB [Shigella dysenteriae CDC 74-1112] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|312972515|ref|ZP_07786689.1| aerobic respiration control sensor protein arcB [Escherichia coli 1827-70] gi|310334892|gb|EFQ01097.1| aerobic respiration control sensor protein arcB [Escherichia coli 1827-70] gi|332754418|gb|EGJ84784.1| aerobic respiration control sensor protein arcB [Shigella flexneri 2747-71] Length = 595 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 105 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 164 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 165 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 224 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 225 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 284 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 285 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 320 >gi|300918972|ref|ZP_07135527.1| PAS domain S-box [Escherichia coli MS 115-1] gi|300413914|gb|EFJ97224.1| PAS domain S-box [Escherichia coli MS 115-1] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|301022112|ref|ZP_07186038.1| PAS domain S-box [Escherichia coli MS 69-1] gi|300397708|gb|EFJ81246.1| PAS domain S-box [Escherichia coli MS 69-1] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGNPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|297518051|ref|ZP_06936437.1| aerobic respiration control sensor protein ArcB [Escherichia coli OP50] Length = 724 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|297530277|ref|YP_003671552.1| histidine kinase [Geobacillus sp. C56-T3] gi|297253529|gb|ADI26975.1| histidine kinase [Geobacillus sp. C56-T3] Length = 367 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 14/217 (6%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + L+ + S H+ +P+ AI ++LL + +I R+ Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 211 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L + + VD V + + + ++L+ Sbjct: 212 ASRKEIVESEKETFSLRQLLEEIIEFLYATIVDSDVDLSVAIDESIHIFAYKDQLRQVLV 271 Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 N+ + + ++ K + I + NG + I + + Sbjct: 272 NILLNSIEAVKEREKPRRINIAARCQDGSIIIEIANNGPSI-PADIVETIFEPFFTTKKL 330 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y + ++ + D S L Sbjct: 331 GTGIGLYICKKVIEDHGGDICCFSN-DKVTTFSIRLP 366 >gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella tarda EIB202] gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella tarda EIB202] gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60] Length = 956 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 24/221 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++ + + H++ +P+ I +L+LL + +EV +L+ S S+ + LK + ++ Sbjct: 474 SMFLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSK 533 Query: 76 SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119 + + V + I ++ ++L Sbjct: 534 IESEQLKIEPGRFVPREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPEALSGDIMRIQQVL 593 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173 NL A G + + + + F ++ G + ++ D + Sbjct: 594 SNLLSNAIKFTDT-GCIILQARVNDFYLEFRVRDTGLGIPPRDVL-RLFDPFFQVGSGVQ 651 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E + + L Sbjct: 652 RHFHGTGLGLAICEKLVSLMDGDIAVESSPGLGSIFTIRLP 692 >gi|256024215|ref|ZP_05438080.1| aerobic respiration control sensor protein ArcB [Escherichia sp. 4_1_40B] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|254163152|ref|YP_003046260.1| aerobic respiration control sensor protein ArcB [Escherichia coli B str. REL606] gi|253975053|gb|ACT40724.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli B str. REL606] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|238757994|ref|ZP_04619175.1| hypothetical protein yaldo0001_8720 [Yersinia aldovae ATCC 35236] gi|238703748|gb|EEP96284.1| hypothetical protein yaldo0001_8720 [Yersinia aldovae ATCC 35236] Length = 900 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 650 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 709 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 710 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSYHQIKVELP 769 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + NG + Sbjct: 770 DEIVLINCDGSLLERVFINLLENAHKYAGNTASLGIRAIVQGEWLNVEVWDNGPGVTAGQ 829 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E D L Sbjct: 830 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGASFRFTLP 884 >gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 710 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 68/233 (29%), Gaps = 25/233 (10%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 + +++ H+I +P+ AI +L+D ++ + + + S+ I Sbjct: 325 MATEAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQRLDGQEKESVDAIQSSSRILLTL 384 Query: 64 -----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--D 110 + L + VD++ + + +V+ ++ +++ Sbjct: 385 VNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRVCLLG 444 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLARFPEKFT 165 ++++NL A P GKV + K +K +G Sbjct: 445 DEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPEHLKE 504 Query: 166 QI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + + + ++ E + + Sbjct: 505 IFEDFKQIGAASAGKPGTGLGLAICKRIVELHGGKISVESVVGKGSEFKIGIP 557 >gi|237706038|ref|ZP_04536519.1| aerobic respiration control sensor protein ArcB [Escherichia sp. 3_2_53FAA] gi|226899078|gb|EEH85337.1| aerobic respiration control sensor protein ArcB [Escherichia sp. 3_2_53FAA] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|194434503|ref|ZP_03066763.1| aerobic respiration control sensor protein ArcB [Shigella dysenteriae 1012] gi|194417282|gb|EDX33391.1| aerobic respiration control sensor protein ArcB [Shigella dysenteriae 1012] gi|320181485|gb|EFW56403.1| Aerobic respiration control sensor protein arcB [Shigella boydii ATCC 9905] gi|332086332|gb|EGI91484.1| aerobic respiration control sensor protein arcB [Shigella boydii 5216-82] gi|332086398|gb|EGI91545.1| aerobic respiration control sensor protein arcB [Shigella dysenteriae 155-74] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|91212635|ref|YP_542621.1| aerobic respiration control sensor protein ArcB [Escherichia coli UTI89] gi|117625502|ref|YP_858825.1| aerobic respiration control sensor protein ArcB [Escherichia coli APEC O1] gi|215488526|ref|YP_002330957.1| aerobic respiration control sensor protein ArcB [Escherichia coli O127:H6 str. E2348/69] gi|218560280|ref|YP_002393193.1| aerobic respiration control sensor protein ArcB [Escherichia coli S88] gi|306816448|ref|ZP_07450580.1| aerobic respiration control sensor protein ArcB [Escherichia coli NC101] gi|312968451|ref|ZP_07782660.1| aerobic respiration control sensor protein arcB [Escherichia coli 2362-75] gi|331649010|ref|ZP_08350098.1| aerobic respiration control sensor protein ArcB [Escherichia coli M605] gi|91074209|gb|ABE09090.1| aerobic respiration control sensor protein ArcB [Escherichia coli UTI89] gi|115514626|gb|ABJ02701.1| aerobic respiration control sensor protein ArcB [Escherichia coli APEC O1] gi|215266598|emb|CAS11037.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O127:H6 str. E2348/69] gi|218367049|emb|CAR04820.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli S88] gi|281180252|dbj|BAI56582.1| aerobic respiration sensor-response protein [Escherichia coli SE15] gi|294492786|gb|ADE91542.1| aerobic respiration control sensor protein ArcB [Escherichia coli IHE3034] gi|305850013|gb|EFM50472.1| aerobic respiration control sensor protein ArcB [Escherichia coli NC101] gi|307625191|gb|ADN69495.1| aerobic respiration control sensor protein ArcB [Escherichia coli UM146] gi|312286669|gb|EFR14580.1| aerobic respiration control sensor protein arcB [Escherichia coli 2362-75] gi|315288991|gb|EFU48389.1| PAS domain S-box [Escherichia coli MS 110-3] gi|323957642|gb|EGB53356.1| hsp90-like protein [Escherichia coli H263] gi|324008722|gb|EGB77941.1| PAS domain S-box [Escherichia coli MS 57-2] gi|330909262|gb|EGH37776.1| aerobic respiration control sensor protein arcB [Escherichia coli AA86] gi|331042757|gb|EGI14899.1| aerobic respiration control sensor protein ArcB [Escherichia coli M605] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|82778524|ref|YP_404873.1| aerobic respiration control sensor protein ArcB [Shigella dysenteriae Sd197] gi|309785538|ref|ZP_07680169.1| aerobic respiration control sensor protein arcB [Shigella dysenteriae 1617] gi|81242672|gb|ABB63382.1| aerobic respiration sensor-response protein [Shigella dysenteriae Sd197] gi|308926658|gb|EFP72134.1| aerobic respiration control sensor protein arcB [Shigella dysenteriae 1617] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|74313747|ref|YP_312166.1| aerobic respiration control sensor protein ArcB [Shigella sonnei Ss046] gi|73857224|gb|AAZ89931.1| histidine protein kinase/phosphatase [Shigella sonnei Ss046] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 1046 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 34/245 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50 ++ + + L A + + H++ +P+ +I ++L E + ++ Sbjct: 484 RRSEEKLIQA-KLEAEEANNSKSEFLANVSHELRTPLNSIIGFSDILIEKVFGELNEKQF 542 Query: 51 QLIRLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + S S M L + + + + + Sbjct: 543 RYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEFSIDPVFEEVKAVLFPLIQAKPL 602 Query: 97 DKRVQVSWTGEK-IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + V +IL NL A P GGKV++ ++S N + S+ G Sbjct: 603 EVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNGGKVSVYCKESGNRALISVIDTG 662 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E ++ + V + + ++ + E Sbjct: 663 IGI-SAEDQVKLFQPFTQLDASTSRQYCGTGLGLALVKKIVNLHQGDIWVESDPGKGSNF 721 Query: 210 SALLE 214 + L Sbjct: 722 TFALP 726 >gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 514 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 56/228 (24%), Gaps = 23/228 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR- 68 + L A + + H+I +P+ + L LL + + + + SA L + Sbjct: 144 ETARLKANFLATMSHEIRTPMNGVLGMLHLLTGSPLTPDQRDHLETAQSSARALLAIIND 203 Query: 69 ----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113 D L ++ +++ R+ + + Sbjct: 204 ILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDKGLTLSLRIADTVPRYQAGDPT 263 Query: 114 ERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG- 170 ++L NL A +G + + F + G + Sbjct: 264 RLRQVLTNLMGNAVKFTEKGDVAVSVEPEESDSSRLRFEVADTGIGIEPAAAPALFSEFV 323 Query: 171 ----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L + + I L Sbjct: 324 QADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGEGTTFHFTLP 371 >gi|15803750|ref|NP_289784.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 EDL933] gi|15833343|ref|NP_312116.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. Sakai] gi|168751616|ref|ZP_02776638.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4113] gi|168754192|ref|ZP_02779199.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4401] gi|168763747|ref|ZP_02788754.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4501] gi|168769066|ref|ZP_02794073.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4486] gi|168777265|ref|ZP_02802272.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4196] gi|168781354|ref|ZP_02806361.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4076] gi|168786096|ref|ZP_02811103.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC869] gi|168800924|ref|ZP_02825931.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC508] gi|208808181|ref|ZP_03250518.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4206] gi|208813912|ref|ZP_03255241.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4045] gi|208820710|ref|ZP_03261030.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4042] gi|209397926|ref|YP_002272680.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4115] gi|217327107|ref|ZP_03443190.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. TW14588] gi|254795159|ref|YP_003079996.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. TW14359] gi|261228221|ref|ZP_05942502.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O157:H7 str. FRIK2000] gi|261255077|ref|ZP_05947610.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O157:H7 str. FRIK966] gi|17366312|sp|P58363|ARCB_ECO57 RecName: Full=Aerobic respiration control sensor protein ArcB gi|12517831|gb|AAG58344.1|AE005549_1 aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Escherichia coli O157:H7 str. EDL933] gi|13363562|dbj|BAB37512.1| aerobic respiration sensor-response protein [Escherichia coli O157:H7 str. Sakai] gi|187767463|gb|EDU31307.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4196] gi|188014362|gb|EDU52484.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4113] gi|189001033|gb|EDU70019.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4076] gi|189358652|gb|EDU77071.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4401] gi|189361737|gb|EDU80156.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4486] gi|189366120|gb|EDU84536.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4501] gi|189373850|gb|EDU92266.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC869] gi|189376853|gb|EDU95269.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC508] gi|208727982|gb|EDZ77583.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4206] gi|208735189|gb|EDZ83876.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4045] gi|208740833|gb|EDZ88515.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4042] gi|209159326|gb|ACI36759.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4115] gi|209757940|gb|ACI77282.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209757942|gb|ACI77283.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209757946|gb|ACI77285.1| aerobic respiration sensor-response protein [Escherichia coli] gi|217319474|gb|EEC27899.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. TW14588] gi|254594559|gb|ACT73920.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O157:H7 str. TW14359] gi|320189563|gb|EFW64222.1| Aerobic respiration control sensor protein arcB [Escherichia coli O157:H7 str. EC1212] gi|326337911|gb|EGD61745.1| Aerobic respiration control sensor protein arcB [Escherichia coli O157:H7 str. 1125] gi|326347480|gb|EGD71205.1| Aerobic respiration control sensor protein arcB [Escherichia coli O157:H7 str. 1044] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|13472735|ref|NP_104302.1| two-component sensor KdpD [Mesorhizobium loti MAFF303099] gi|14023482|dbj|BAB50088.1| two-component sensor; KdpD [Mesorhizobium loti MAFF303099] Length = 907 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 59/232 (25%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LS 56 + L + L + I HD+ +P+ AI + L E + S Sbjct: 658 RAKLAAEADRLRSALLTSISHDLKTPLSAIMGAAGTLKEFAPDLPEQDRAELLSTVIDES 717 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKID 110 + + +G+++ L + ++ + + +++V + Sbjct: 718 ERLNRFIANLLDMTKIESGAMEPNYALHYVGDIVGTALNRARKITSEHKIEVDIPPDLPM 777 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 L + ++L NL A P G + + I + G + Sbjct: 778 LKLDPVLFEQVLFNLLDNASKYSPPGSTIRLQGWADNGSVIVQIMDEGPGIPSHDLERVF 837 Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 D + + D + + Sbjct: 838 DTFYRVRKGDQVRAGTGLGLSICRGFVESMGGTISAANRTDRPGAAFTIRMP 889 >gi|187730817|ref|YP_001881876.1| aerobic respiration control sensor protein ArcB [Shigella boydii CDC 3083-94] gi|187427809|gb|ACD07083.1| aerobic respiration control sensor protein ArcB [Shigella boydii CDC 3083-94] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|124266471|ref|YP_001020475.1| multi-sensor signal transduction histidine kinase [Methylibium petroleiphilum PM1] gi|124259246|gb|ABM94240.1| multi-sensor signal transduction histidine kinase [Methylibium petroleiphilum PM1] Length = 460 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 ++++I + + + + H+I +P+ + +E + V+ L+ Sbjct: 196 LSQDITERERADAMRRDFVANVSHEIRTPLTVLSGFIETMSTLPLTEVESRRVLVLMSQQ 255 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + GS + + D R + A Sbjct: 256 AQRMQTLVSDLLTLAQLEGSPRPAADRWIAVSRLLQLVEADARTLSQGRHTLTLAGDDSA 315 Query: 117 KIL----------LNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKF- 164 +I NL A P GG++ IS + + F+++ G Sbjct: 316 QIAGAETELLSALTNLANNAVRYTPEGGRIDISWRRLADGSGEFAVRDTGLGIEREHLPR 375 Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + G+ + V +A + L + + Sbjct: 376 LTERFYRVDGSRSRDTGGTGLGLSIVKHVAQRHGGELDVQSEPGKGSTFRLVFP 429 >gi|24114498|ref|NP_709008.1| aerobic respiration control sensor protein ArcB [Shigella flexneri 2a str. 301] gi|30064547|ref|NP_838718.1| aerobic respiration control sensor protein ArcB [Shigella flexneri 2a str. 2457T] gi|49176326|ref|YP_026207.1| aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB [Escherichia coli str. K-12 substr. MG1655] gi|82545553|ref|YP_409500.1| aerobic respiration control sensor protein ArcB [Shigella boydii Sb227] gi|89109973|ref|AP_003753.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K-12 substr. W3110] gi|110807075|ref|YP_690595.1| aerobic respiration control sensor protein ArcB [Shigella flexneri 5 str. 8401] gi|157159325|ref|YP_001464688.1| aerobic respiration control sensor protein ArcB [Escherichia coli E24377A] gi|170018540|ref|YP_001723494.1| aerobic respiration control sensor protein ArcB [Escherichia coli ATCC 8739] gi|170082744|ref|YP_001732064.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K-12 substr. DH10B] gi|170683438|ref|YP_001745482.1| aerobic respiration control sensor protein ArcB [Escherichia coli SMS-3-5] gi|188492706|ref|ZP_02999976.1| aerobic respiration control sensor protein ArcB [Escherichia coli 53638] gi|191168636|ref|ZP_03030418.1| aerobic respiration control sensor protein ArcB [Escherichia coli B7A] gi|193065369|ref|ZP_03046440.1| aerobic respiration control sensor protein ArcB [Escherichia coli E22] gi|193070312|ref|ZP_03051255.1| aerobic respiration control sensor protein ArcB [Escherichia coli E110019] gi|194429137|ref|ZP_03061667.1| aerobic respiration control sensor protein ArcB [Escherichia coli B171] gi|194439214|ref|ZP_03071295.1| aerobic respiration control sensor protein ArcB [Escherichia coli 101-1] gi|209920685|ref|YP_002294769.1| aerobic respiration control sensor protein ArcB [Escherichia coli SE11] gi|218555780|ref|YP_002388693.1| aerobic respiration control sensor protein ArcB [Escherichia coli IAI1] gi|218696915|ref|YP_002404582.1| aerobic respiration control sensor protein ArcB [Escherichia coli 55989] gi|218701979|ref|YP_002409608.1| aerobic respiration control sensor protein ArcB [Escherichia coli IAI39] gi|218706830|ref|YP_002414349.1| aerobic respiration control sensor protein ArcB [Escherichia coli UMN026] gi|238902312|ref|YP_002928108.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli BW2952] gi|253771956|ref|YP_003034787.1| aerobic respiration control sensor protein ArcB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038375|ref|ZP_04872433.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43] gi|256018871|ref|ZP_05432736.1| aerobic respiration control sensor protein ArcB [Shigella sp. D9] gi|260857337|ref|YP_003231228.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O26:H11 str. 11368] gi|260869961|ref|YP_003236363.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O111:H- str. 11128] gi|291284584|ref|YP_003501402.1| Aerobic respiration control sensor protein arcB [Escherichia coli O55:H7 str. CB9615] gi|293406819|ref|ZP_06650745.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1412] gi|293412581|ref|ZP_06655304.1| conserved hypothetical protein [Escherichia coli B354] gi|293416639|ref|ZP_06659278.1| aerobic respiration control sensor protein ArcB [Escherichia coli B185] gi|293449543|ref|ZP_06663964.1| aerobic respiration control sensor protein ArcB [Escherichia coli B088] gi|298382560|ref|ZP_06992157.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1302] gi|300817535|ref|ZP_07097751.1| PAS domain S-box protein [Escherichia coli MS 107-1] gi|300897978|ref|ZP_07116354.1| PAS domain S-box [Escherichia coli MS 198-1] gi|300904402|ref|ZP_07122250.1| PAS domain S-box [Escherichia coli MS 84-1] gi|300926045|ref|ZP_07141867.1| PAS domain S-box [Escherichia coli MS 182-1] gi|300929906|ref|ZP_07145348.1| PAS domain S-box [Escherichia coli MS 187-1] gi|300938126|ref|ZP_07152900.1| PAS domain S-box [Escherichia coli MS 21-1] gi|300948865|ref|ZP_07162930.1| PAS domain S-box [Escherichia coli MS 116-1] gi|301025888|ref|ZP_07189375.1| PAS domain S-box [Escherichia coli MS 196-1] gi|301326357|ref|ZP_07219721.1| PAS domain S-box [Escherichia coli MS 78-1] gi|301644924|ref|ZP_07244893.1| PAS domain S-box [Escherichia coli MS 146-1] gi|307139896|ref|ZP_07499252.1| aerobic respiration control sensor protein ArcB [Escherichia coli H736] gi|307313085|ref|ZP_07592711.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|309793789|ref|ZP_07688215.1| PAS domain S-box [Escherichia coli MS 145-7] gi|331643908|ref|ZP_08345039.1| aerobic respiration control sensor protein ArcB [Escherichia coli H736] gi|331654814|ref|ZP_08355814.1| aerobic respiration control sensor protein ArcB [Escherichia coli M718] gi|331670037|ref|ZP_08370882.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA271] gi|331679289|ref|ZP_08379961.1| aerobic respiration control sensor protein ArcB [Escherichia coli H591] gi|331684857|ref|ZP_08385449.1| aerobic respiration control sensor protein ArcB [Escherichia coli H299] gi|332279959|ref|ZP_08392372.1| histidine protein kinase/phosphatase [Shigella sp. D9] gi|83287862|sp|P0AEC3|ARCB_ECOLI RecName: Full=Aerobic respiration control sensor protein ArcB gi|83287863|sp|P0AEC4|ARCB_SHIFL RecName: Full=Aerobic respiration control sensor protein ArcB gi|40951|emb|CAA37397.1| arcB [Escherichia coli] gi|24053684|gb|AAN44715.1| histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|30042806|gb|AAP18529.1| histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 2457T] gi|48994928|gb|AAT48172.1| aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB [Escherichia coli str. K-12 substr. MG1655] gi|81246964|gb|ABB67672.1| aerobic respiration sensor-response protein [Shigella boydii Sb227] gi|85676004|dbj|BAE77254.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K12 substr. W3110] gi|110616623|gb|ABF05290.1| aerobic respiration sensor-response protein [Shigella flexneri 5 str. 8401] gi|157081355|gb|ABV21063.1| aerobic respiration control sensor protein ArcB [Escherichia coli E24377A] gi|169753468|gb|ACA76167.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739] gi|169890579|gb|ACB04286.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K-12 substr. DH10B] gi|170521156|gb|ACB19334.1| aerobic respiration control sensor protein ArcB [Escherichia coli SMS-3-5] gi|188487905|gb|EDU63008.1| aerobic respiration control sensor protein ArcB [Escherichia coli 53638] gi|190901330|gb|EDV61097.1| aerobic respiration control sensor protein ArcB [Escherichia coli B7A] gi|192927010|gb|EDV81633.1| aerobic respiration control sensor protein ArcB [Escherichia coli E22] gi|192956371|gb|EDV86831.1| aerobic respiration control sensor protein ArcB [Escherichia coli E110019] gi|194412862|gb|EDX29154.1| aerobic respiration control sensor protein ArcB [Escherichia coli B171] gi|194421910|gb|EDX37916.1| aerobic respiration control sensor protein ArcB [Escherichia coli 101-1] gi|209757938|gb|ACI77281.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209757944|gb|ACI77284.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209913944|dbj|BAG79018.1| aerobic respiration sensor-response protein [Escherichia coli SE11] gi|218353647|emb|CAU99866.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli 55989] gi|218362548|emb|CAR00172.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli IAI1] gi|218371965|emb|CAR19821.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli IAI39] gi|218433927|emb|CAR14844.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli UMN026] gi|222034927|emb|CAP77670.1| aerobic respiration control sensor protein arcB [Escherichia coli LF82] gi|226839999|gb|EEH72020.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43] gi|238861439|gb|ACR63437.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli BW2952] gi|242378753|emb|CAQ33543.1| ArcB sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253323000|gb|ACT27602.1| multi-sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253979209|gb|ACT44879.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli BL21(DE3)] gi|257755986|dbj|BAI27488.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O26:H11 str. 11368] gi|257766317|dbj|BAI37812.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O111:H- str. 11128] gi|260447763|gb|ACX38185.1| multi-sensor hybrid histidine kinase [Escherichia coli DH1] gi|281602592|gb|ADA75576.1| Aerobic respiration control sensor protein arcB [Shigella flexneri 2002017] gi|290764457|gb|ADD58418.1| Aerobic respiration control sensor protein arcB [Escherichia coli O55:H7 str. CB9615] gi|291322633|gb|EFE62062.1| aerobic respiration control sensor protein ArcB [Escherichia coli B088] gi|291426825|gb|EFE99857.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1412] gi|291431995|gb|EFF04978.1| aerobic respiration control sensor protein ArcB [Escherichia coli B185] gi|291469352|gb|EFF11843.1| conserved hypothetical protein [Escherichia coli B354] gi|298277700|gb|EFI19216.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1302] gi|299879910|gb|EFI88121.1| PAS domain S-box [Escherichia coli MS 196-1] gi|300358326|gb|EFJ74196.1| PAS domain S-box [Escherichia coli MS 198-1] gi|300403676|gb|EFJ87214.1| PAS domain S-box [Escherichia coli MS 84-1] gi|300417903|gb|EFK01214.1| PAS domain S-box [Escherichia coli MS 182-1] gi|300451670|gb|EFK15290.1| PAS domain S-box [Escherichia coli MS 116-1] gi|300456889|gb|EFK20382.1| PAS domain S-box [Escherichia coli MS 21-1] gi|300462192|gb|EFK25685.1| PAS domain S-box [Escherichia coli MS 187-1] gi|300529833|gb|EFK50895.1| PAS domain S-box protein [Escherichia coli MS 107-1] gi|300846921|gb|EFK74681.1| PAS domain S-box [Escherichia coli MS 78-1] gi|301076775|gb|EFK91581.1| PAS domain S-box [Escherichia coli MS 146-1] gi|306906996|gb|EFN37504.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|308122746|gb|EFO60008.1| PAS domain S-box [Escherichia coli MS 145-7] gi|309703636|emb|CBJ02976.1| aerobic respiration control protein (bifunctional two-component sensor kinase/response regulator) [Escherichia coli ETEC H10407] gi|312947767|gb|ADR28594.1| aerobic respiration control sensor protein ArcB [Escherichia coli O83:H1 str. NRG 857C] gi|313648546|gb|EFS12988.1| aerobic respiration control sensor protein arcB [Shigella flexneri 2a str. 2457T] gi|315062516|gb|ADT76843.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli W] gi|315137796|dbj|BAJ44955.1| aerobic respiration control sensor protein arcB [Escherichia coli DH1] gi|315257138|gb|EFU37106.1| PAS domain S-box [Escherichia coli MS 85-1] gi|315617017|gb|EFU97627.1| aerobic respiration control sensor protein arcB [Escherichia coli 3431] gi|320186696|gb|EFW61420.1| Aerobic respiration control sensor protein arcB [Shigella flexneri CDC 796-83] gi|320202124|gb|EFW76699.1| Aerobic respiration control sensor protein arcB [Escherichia coli EC4100B] gi|320640281|gb|EFX09853.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. G5101] gi|320645578|gb|EFX14587.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H- str. 493-89] gi|320650888|gb|EFX19345.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H- str. H 2687] gi|320656269|gb|EFX24181.1| aerobic respiration control sensor protein ArcB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666794|gb|EFX33773.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. LSU-61] gi|323154425|gb|EFZ40626.1| aerobic respiration control sensor protein arcB [Escherichia coli EPECa14] gi|323162902|gb|EFZ48737.1| aerobic respiration control sensor protein arcB [Escherichia coli E128010] gi|323173530|gb|EFZ59159.1| aerobic respiration control sensor protein arcB [Escherichia coli LT-68] gi|323178614|gb|EFZ64190.1| aerobic respiration control sensor protein arcB [Escherichia coli 1180] gi|323183164|gb|EFZ68562.1| aerobic respiration control sensor protein arcB [Escherichia coli 1357] gi|323376896|gb|ADX49164.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11] gi|323941690|gb|EGB37869.1| hsp90-like protein [Escherichia coli E482] gi|323946936|gb|EGB42952.1| hsp90-like protein [Escherichia coli H120] gi|323961135|gb|EGB56749.1| hsp90-like protein [Escherichia coli H489] gi|323966390|gb|EGB61824.1| hsp90-like protein [Escherichia coli M863] gi|323970227|gb|EGB65498.1| hsp90-like protein [Escherichia coli TA007] gi|324119575|gb|EGC13457.1| hsp90-like protein [Escherichia coli E1167] gi|331037379|gb|EGI09603.1| aerobic respiration control sensor protein ArcB [Escherichia coli H736] gi|331048196|gb|EGI20273.1| aerobic respiration control sensor protein ArcB [Escherichia coli M718] gi|331062950|gb|EGI34864.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA271] gi|331073354|gb|EGI44677.1| aerobic respiration control sensor protein ArcB [Escherichia coli H591] gi|331078472|gb|EGI49678.1| aerobic respiration control sensor protein ArcB [Escherichia coli H299] gi|332090932|gb|EGI96023.1| aerobic respiration control sensor protein arcB [Shigella boydii 3594-74] gi|332102311|gb|EGJ05657.1| histidine protein kinase/phosphatase [Shigella sp. D9] gi|332345167|gb|AEE58501.1| aerobic respiration control sensor protein ArcB [Escherichia coli UMNK88] gi|332752897|gb|EGJ83282.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-671] gi|332765209|gb|EGJ95436.1| aerobic respiration control sensor protein arcB [Shigella flexneri 2930-71] gi|332999289|gb|EGK18875.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-272] gi|333014521|gb|EGK33868.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-304] gi|333014660|gb|EGK34006.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-227] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|26249796|ref|NP_755836.1| aerobic respiration control sensor protein ArcB [Escherichia coli CFT073] gi|110643451|ref|YP_671181.1| aerobic respiration control sensor protein ArcB [Escherichia coli 536] gi|191174415|ref|ZP_03035918.1| aerobic respiration control sensor protein ArcB [Escherichia coli F11] gi|227887931|ref|ZP_04005736.1| histidine kinase [Escherichia coli 83972] gi|300979941|ref|ZP_07174793.1| PAS domain S-box [Escherichia coli MS 200-1] gi|300990940|ref|ZP_07179392.1| PAS domain S-box protein [Escherichia coli MS 45-1] gi|301047943|ref|ZP_07194988.1| PAS domain S-box [Escherichia coli MS 185-1] gi|26110224|gb|AAN82410.1|AE016767_170 Aerobic respiration control sensor protein arcB [Escherichia coli CFT073] gi|110345043|gb|ABG71280.1| aerobic respiration control sensor protein ArcB [Escherichia coli 536] gi|190905305|gb|EDV64941.1| aerobic respiration control sensor protein ArcB [Escherichia coli F11] gi|227835327|gb|EEJ45793.1| histidine kinase [Escherichia coli 83972] gi|300300175|gb|EFJ56560.1| PAS domain S-box [Escherichia coli MS 185-1] gi|300307876|gb|EFJ62396.1| PAS domain S-box [Escherichia coli MS 200-1] gi|300407016|gb|EFJ90554.1| PAS domain S-box protein [Escherichia coli MS 45-1] gi|307555303|gb|ADN48078.1| aerobic respiration control sensor protein ArcB [Escherichia coli ABU 83972] gi|315294870|gb|EFU54209.1| PAS domain S-box [Escherichia coli MS 153-1] gi|323189169|gb|EFZ74453.1| aerobic respiration control sensor protein arcB [Escherichia coli RN587/1] gi|324012146|gb|EGB81365.1| PAS domain S-box [Escherichia coli MS 60-1] Length = 778 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|320353090|ref|YP_004194429.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121592|gb|ADW17138.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 740 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 54/224 (24%), Gaps = 20/224 (8%) Query: 10 SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLIRLSSM 58 + L A + RI H+I +P+ I S + L + ++ D+ I Sbjct: 515 KAQRLAAWQEVARRIAHEIKNPLTPIQLSAQRLRKRYLDTIGENRAIFDQCTATIINQVD 574 Query: 59 SAIIRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + L V+ + + + Sbjct: 575 EIKNLVSEFSDFARMPQLHKERKNLGLLVQEVVVLYQEAHKQLTITCHADPALPEFLFDA 634 Query: 116 AKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +I L + ++ VT+ + + G E +I + Sbjct: 635 VQIKRVLINLLDNAVSVLAGGGNIAVTLGPGGNGATVRLEVADTGPGI-SDEVKLRIFEP 693 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ + V + L Sbjct: 694 YFSTRKSGTGLGLAIAHTIVSEHGGSIRVYDNTPTGAVFAVELP 737 >gi|320108083|ref|YP_004183673.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319926604|gb|ADV83679.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 682 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 67/234 (28%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58 + L S L A+ L S I H+I +P+ ++ N L L+ + + + + + Sbjct: 425 KQAEAALLQSEKLAAVGRLASSISHEINNPLASVTNLLYLIRSDESMSPQSRDYLETADR 484 Query: 59 SAII---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 I R + + + ++ + + + + Sbjct: 485 ELIRVSQVAAQTLRFHRQSTRPMTIAPETLMDEVLALYGGRLVNFNINVQREYAPDVQLT 544 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLARFPEK 163 + ++L NL A + GG + + + S ++ G Sbjct: 545 CYEGDVRQVLNNLIGNAVDVMRNGGWLRVRTRPSTLWSTGRAGVRITVADTGGGMTPKVA 604 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII---DDHNVVLSALLE 214 + + + + H+++ L + V + L Sbjct: 605 KHIFEAFFTTKGNNGTGLGLWISSRIVHKHQGALKVRTSTANEHRGSVFTLWLP 658 >gi|255263227|ref|ZP_05342569.1| sensory box histidine kinase/response regulator [Thalassiobium sp. R2A62] gi|255105562|gb|EET48236.1| sensory box histidine kinase/response regulator [Thalassiobium sp. R2A62] Length = 835 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 58/238 (24%), Gaps = 26/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA++ L + + H+I +P+ + ++ LL + ++ + + S Sbjct: 342 MARDKALA--GEKLKTDFLATMSHEIRTPLNGLLGNMSLLRDTHLDTAQDRYVGYMETSG 399 Query: 61 IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 + + + G V+ L DI + + Sbjct: 400 RLLMNHISDVLDITRYDAGKLDTRLGPVNISALLQDIVDNQSSAASKHETSLTWKWLSEE 459 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFP 161 T + +++NL A R V + +K G Sbjct: 460 TSWILSDHDRLQHVMINLIGNAVKFTKRGRVDITVEEIKEHDNPTLQIQIKDTGPGMTED 519 Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + + + E L Sbjct: 520 LVKSVFDDFVTGDTSYHRDVSGTGLGLSIAKRFVNALGGDIRVESKAGFGSTFWVTLP 577 >gi|302873564|ref|YP_003842197.1| integral membrane sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307688256|ref|ZP_07630702.1| integral membrane sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302576421|gb|ADL50433.1| integral membrane sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 483 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 75/238 (31%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 + ++ + L+ S I HD+ +PI +I +E +LD V +E + Sbjct: 234 LKDSVTLKSKYDENRRLIVSSISHDLKTPITSIKGYVEGILDGVANTEEKVFDYLKIINM 293 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115 + + +D + E+ D + +K ++ Sbjct: 294 KADYMNVIIDDLLLHSKLDLNQIPYNFEKTDIVNYFEDCICECEGELKKYNIDMNLDNQL 353 Query: 116 -------------AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP 161 ++++N+ A + + G++ I ++++ I ++ NG Sbjct: 354 VTTRMVKIDREKLRRVIINIIDNARKYMDKEYGQINIDLRETNTSIIIEIRDNGMGIDEE 413 Query: 162 E---KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E F + + + + ++K R+ + + L K Sbjct: 414 EVNKIFNRFYRIDKSRNQTKGSGLGLAIAKQIVEDHKGRIWAKSHGGEGTSILMSLPK 471 >gi|262199012|ref|YP_003270221.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262082359|gb|ACY18328.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 602 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 68/241 (28%), Gaps = 28/241 (11%) Query: 1 MAKNI--CFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--- 48 MA+ I L S L A+ + + + H++ +P+ + +LL E E Sbjct: 357 MARRIGEREKLQSALARGDRLAAVGTMAASVAHEVNNPLTTVLGYAKLLLEDKPEQHADR 416 Query: 49 -VMQLIRLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 ++LI + + + G D L ++ + + Sbjct: 417 PGLELIAEEAERMKGIIGTLLDYSRSERAPRPEGRTDVNESLRHTAALMVPQLRRMRVEL 476 Query: 102 VSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKIN 154 GE + S ++ +NL A S+ G + + Sbjct: 477 ELELGEDLPPAAAGSHALQQVFVNLVQNAAQSMLPAGGPVRVSSALGPGKVALVVQVSDE 536 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALL 213 G E+ +I + V + + + L + + ++ Sbjct: 537 GPGVPEAERK-RIFEPFVTTKVSGTGLGLAVCKHLVVSFGGSIEVSDNASGRGATFRVVI 595 Query: 214 E 214 Sbjct: 596 P 596 >gi|307152019|ref|YP_003887403.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982247|gb|ADN14128.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 398 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 60/245 (24%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSM-----------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49 M + + + L S + HD +P+ I S LL++ Sbjct: 138 MNEKLQMRVEERTAELTKAKEINQLKTEFVSMLSHDFRNPLNTILLSAGLLEDCRDRLSQ 197 Query: 50 MQLIRLSSMSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 Q + M ++ +I Q I+ Sbjct: 198 EQQLNYFQMIRSAIKDMDQLLTEVLIIGRADAGRLKFNPVPLNLKEFCANILQAFRLNIS 257 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK 152 ++ G D + + L A P GG + + + + K + IF+++ Sbjct: 258 EAHQLIFKADGNFNDGLWDDNLLRHILNNLLGNALKYSPNGGIIRLDLIEGKGQVIFTVQ 317 Query: 153 INGNLARFPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + +D + V + + + Sbjct: 318 DQGIGIPPEAIEGLFKPFFRATNVDNIAGTGLGLAIVQRCVETHGGYVEVKSQVGVGTTF 377 Query: 210 SALLE 214 L Sbjct: 378 MVTLP 382 >gi|206972722|ref|ZP_03233659.1| putative sensor histidine kinase [Bacillus cereus AH1134] gi|206732355|gb|EDZ49540.1| putative sensor histidine kinase [Bacillus cereus AH1134] Length = 337 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 + + S + L S I HDI +P+ +I ++ L + E E + +++ M Sbjct: 95 LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKVLYM 154 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + F + L + + + + Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPE 214 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 T I +I+ NL A G + + + ++ E + G + Sbjct: 215 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPQHDL 274 Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + L +N + E + K Sbjct: 275 QNIFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSVPK 331 >gi|157273376|gb|ABV27275.1| alkaline phosphatase synthesis sensor protein PhoR [Candidatus Chloracidobacterium thermophilum] Length = 363 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 15/218 (6%), Positives = 63/218 (28%), Gaps = 22/218 (10%) Query: 20 SRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69 + + H++ +P+ +I +E L + + +Q+I + ++ + Sbjct: 133 ANLSHELRTPLTSILAYVETLLNGAIYDNENNIQFLQIINKHATRMQNLVRDIADLSAIE 192 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 +++ + ++ ++ + + + + + + L + Sbjct: 193 AGEFKLEPVTIELKAFVDNLAVLVLPEATTRQVTFRNEVPAGVQVYADPQALEQILMNLI 252 Query: 127 HASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TID 177 ++ V + +S + +++ G F ++ + + Sbjct: 253 INAVKFNRPGGEVVVTANFESDVRTVIAVRDTGIGIEAKHLGRIFERLYRVDKSRSQEVG 312 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + + L + Sbjct: 313 GTGLGLAIVKHLVLNHGGDISVDSTPGVGSEFRVRLPR 350 >gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 956 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 27/236 (11%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 L + + + + + H+I +P+ I ELL + + + + S+ I L Sbjct: 282 RKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPRQQRDHLNTIRKSSEILL 341 Query: 65 KFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108 + ++ + ++ ++ V Sbjct: 342 TIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPDNI 401 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPE 162 + +++ NL A G + ++ S+ +G + Sbjct: 402 MGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEDEDTEHNRVTLRLSITDSGVGLSRAQ 461 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + L E ++ E L Sbjct: 462 QQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517 >gi|329571903|gb|EGG53581.1| PAS domain S-box protein [Enterococcus faecalis TX1467] Length = 591 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|317154224|ref|YP_004122272.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944475|gb|ADU63526.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 881 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 38/252 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49 + + + +L + S + H++ +P+ ++ +++ + Sbjct: 427 LRQANRRLMELDELKSAFLSSVSHELRTPLTSLLGFSKIIRRDFTRTFMHLADTAQAQRL 486 Query: 50 -------MQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQ-----V 89 + +I + +D + + Sbjct: 487 GERIQSNLDIIGSEGERLTRLINDVLDLSRIESGQEDWRFTEIDLAGCVNRAVSAASGLL 546 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 ++ ++L+NL A G D + Sbjct: 547 SPKPQVRLTIRRMDPVPLVHADQDRIHQVLMNLLSNAVKFTDFGEVAVDLYLDDQGMARI 606 Query: 150 SLKINGNLARFPEKFTQIVDGNV-------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202 ++ G + + + + R+ E Sbjct: 607 RVEDTGRGIKARYLEQIFDKFHQVHRGDTLTEKPAGTGLGLAISRQIVEHYHGRIWAESK 666 Query: 203 DDHNVVLSALLE 214 V++ L Sbjct: 667 LGRGTVMNVALP 678 >gi|315172457|gb|EFU16474.1| PAS domain S-box [Enterococcus faecalis TX1346] Length = 591 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + D+ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILSSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|294781584|ref|ZP_06746920.1| sensor histidine kinase/response regulator [Enterococcus faecalis PC1.1] gi|294451280|gb|EFG19746.1| sensor histidine kinase/response regulator [Enterococcus faecalis PC1.1] Length = 590 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|293382857|ref|ZP_06628775.1| sensory box histidine kinase [Enterococcus faecalis R712] gi|293389656|ref|ZP_06634111.1| sensory box histidine kinase [Enterococcus faecalis S613] gi|307269515|ref|ZP_07550854.1| PAS domain S-box [Enterococcus faecalis TX4248] gi|307273087|ref|ZP_07554333.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|312901892|ref|ZP_07761157.1| PAS domain S-box [Enterococcus faecalis TX0470] gi|312907672|ref|ZP_07766663.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|312910289|ref|ZP_07769136.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|291079522|gb|EFE16886.1| sensory box histidine kinase [Enterococcus faecalis R712] gi|291081049|gb|EFE18012.1| sensory box histidine kinase [Enterococcus faecalis S613] gi|306510072|gb|EFM79096.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|306514135|gb|EFM82711.1| PAS domain S-box [Enterococcus faecalis TX4248] gi|310626700|gb|EFQ09983.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|311289562|gb|EFQ68118.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|311291085|gb|EFQ69641.1| PAS domain S-box [Enterococcus faecalis TX0470] gi|315037116|gb|EFT49048.1| PAS domain S-box [Enterococcus faecalis TX0027] gi|315144943|gb|EFT88959.1| PAS domain S-box [Enterococcus faecalis TX2141] gi|315162379|gb|EFU06396.1| PAS domain S-box [Enterococcus faecalis TX0645] gi|315168898|gb|EFU12915.1| PAS domain S-box [Enterococcus faecalis TX1341] gi|315576087|gb|EFU88278.1| PAS domain S-box [Enterococcus faecalis TX0309B] gi|315580661|gb|EFU92852.1| PAS domain S-box [Enterococcus faecalis TX0309A] Length = 591 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|257086990|ref|ZP_05581351.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6] gi|256995020|gb|EEU82322.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6] gi|315027860|gb|EFT39792.1| PAS domain S-box [Enterococcus faecalis TX2137] Length = 591 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|257085051|ref|ZP_05579412.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|256993081|gb|EEU80383.1| sensory box histidine kinase [Enterococcus faecalis Fly1] Length = 584 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + D+ + +++ + + Sbjct: 357 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 416 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 417 QEILELSRGSATIPYAEQEITLEKFITEILSSYQQQLAAKQLKTVVHGLPESQFFTKYEL 476 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 477 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 535 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 536 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 581 >gi|256961794|ref|ZP_05565965.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96] gi|256964991|ref|ZP_05569162.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704] gi|257079145|ref|ZP_05573506.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1] gi|256952290|gb|EEU68922.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96] gi|256955487|gb|EEU72119.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704] gi|256987175|gb|EEU74477.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1] Length = 576 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 346 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 405 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 406 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 465 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 466 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 524 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 525 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 570 >gi|256959113|ref|ZP_05563284.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5] gi|256949609|gb|EEU66241.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5] Length = 583 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 357 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 416 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 417 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 476 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 477 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 535 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 536 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 581 >gi|256853259|ref|ZP_05558629.1| sensory box histidine kinase [Enterococcus faecalis T8] gi|256711718|gb|EEU26756.1| sensory box histidine kinase [Enterococcus faecalis T8] Length = 587 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|256762633|ref|ZP_05503213.1| sensor histidine kinase [Enterococcus faecalis T3] gi|256683884|gb|EEU23579.1| sensor histidine kinase [Enterococcus faecalis T3] Length = 506 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 276 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 335 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 336 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 395 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 396 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 454 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 455 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 500 >gi|229545684|ref|ZP_04434409.1| sensor histidine kinase [Enterococcus faecalis TX1322] gi|257422479|ref|ZP_05599469.1| two component system sensor histidine kinase [Enterococcus faecalis X98] gi|300860668|ref|ZP_07106755.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|307275836|ref|ZP_07556975.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|307291859|ref|ZP_07571730.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|229309134|gb|EEN75121.1| sensor histidine kinase [Enterococcus faecalis TX1322] gi|257164303|gb|EEU94263.1| two component system sensor histidine kinase [Enterococcus faecalis X98] gi|300849707|gb|EFK77457.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|306497125|gb|EFM66671.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|306507528|gb|EFM76659.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|315029564|gb|EFT41496.1| PAS domain S-box [Enterococcus faecalis TX4000] gi|315032036|gb|EFT43968.1| PAS domain S-box [Enterococcus faecalis TX0017] gi|315156146|gb|EFU00163.1| PAS domain S-box [Enterococcus faecalis TX0043] Length = 591 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + ++ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|229149756|ref|ZP_04277986.1| hypothetical protein bcere0011_13140 [Bacillus cereus m1550] gi|228633787|gb|EEK90386.1| hypothetical protein bcere0011_13140 [Bacillus cereus m1550] Length = 429 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 251 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 252 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLVSEVSLHNISIDYNFSNELDDILVN 311 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 370 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + + Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSASN-GTTFTISIP 415 >gi|218233711|ref|YP_002366239.1| sensor histidine kinase [Bacillus cereus B4264] gi|218161668|gb|ACK61660.1| sensor histidine kinase [Bacillus cereus B4264] Length = 423 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L D Q + + + + Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLVSEVSLHNISIDYNFSNELDDILVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSASN-GTTFTISIP 409 >gi|220915651|ref|YP_002490955.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953505|gb|ACL63889.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 414 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 60/205 (29%), Gaps = 9/205 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRL-KFMRLA 70 + + + H+I +P+G I + EL+ + E + + F+ LA Sbjct: 207 MAAMVAHEIRNPLGVIRGAAELVRARSGAALAPRDQEALADVLGEVERLRRLTEDFLDLA 266 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS- 129 + + + V+V+ + + + + A++ L + + Sbjct: 267 RDPAIAAEPADLAELAAEAARALGRAHPSVEVALSVPPLRVRADAARVRQVLANLLENAA 326 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 L +V ++ + ++ +G ++ + + + Sbjct: 327 LAGARRVAVTAGPAGPMARLEVRDDGPGVDAA-VRARLFEPFASGRARGAGLGLAISRRI 385 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 A + L + L Sbjct: 386 AERHGGALELADPGPPGAAFALTLP 410 >gi|119898703|ref|YP_933916.1| two-component system sensor protein [Azoarcus sp. BH72] gi|119671116|emb|CAL95029.1| probable two-component system sensor protein [Azoarcus sp. BH72] Length = 915 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/248 (10%), Positives = 64/248 (25%), Gaps = 35/248 (14%) Query: 2 AKNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLELLDEV----- 43 K+ +++ +L A S + H++ +P+ +I E+L E Sbjct: 660 EKSHALEVATEELRAANEQLKEFDRLKDDFMSSVTHELRTPLTSIRALSEMLYEDPRIGL 719 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFI 94 + +I + + + + + + L + + F Sbjct: 720 EDRTRFLGIIVSEAERLTRLVNQVLDLAKIESGHAEWHNSDVDMRELALHAADTTAQLFR 779 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFS 150 + + L +R ++L L + + V+ + Sbjct: 780 ERGAALVLDLPERVPLLRADRDRLLQVLLNLLSNAAKFVPPAGGEVRLVLRPENSGLRAD 839 Query: 151 LKINGNLARFPE---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + NG + F + G + + RL E Sbjct: 840 VIDNGPGIPPEQQQVIFEKFRQGGDARARPPGTGLGLPISRQIIEHFGGRLWVESGPGEG 899 Query: 207 VVLSALLE 214 S +L Sbjct: 900 SRFSFVLP 907 >gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 989 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 56/238 (23%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRL 55 + + + + + + + I H++ +P+ I ++L ++ + + + Sbjct: 522 LEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGYAQILQRDVRLDTRQLASVGV 581 Query: 56 SSMSAIIRLKFMRLAFGYTGS----------------VDSLIGLGDIEQVIEDFIAVDKR 99 S L + + I + + + ++ Sbjct: 582 IEQSGQHLLTLINDILDFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQKRLVLNYV 641 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 R ++LLNL A RG + + F ++ G Sbjct: 642 AAPDLPAVVRVDERRLRQVLLNLLANAVQFTDRGEVTLSVSRGAAGRLRFEVRDTGIGVS 701 Query: 160 FPEKFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 G+ + L + V L Sbjct: 702 ADRLEAIFQPFEQAGDHTRRSGGAGLGLAISQQLVRMMGGEIEVTSSAGEGSVFGFEL 759 >gi|94265844|ref|ZP_01289575.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93453619|gb|EAT04012.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 696 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 34/243 (13%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54 + S + L L + H+I +P+ I +LL + DE + + + Sbjct: 437 QEKLIHSQKMEDLGRLAGGVAHEINTPLSIILGYAQLLLQDIPPDEPVAQDVAIIEKQTQ 496 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110 L F R +D + ++ ++E ++ + Sbjct: 497 ACRKIVADLLSFSRGTDQAREKMDINESIREVTSLVEHIFRQNRITILQRLDDQIPPIHG 556 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ +NL A ++ G + I + + S+ G+ + +I Sbjct: 557 NRERLRQVWMNLLNNAADAIGSDGSIQIKTKLCAHRRRLVVSVADTGSGITEHDL-DKIF 615 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLP---------------EIIDDHNVVLSA 211 + + + + ++ R+ E V Sbjct: 616 EPFFTTKPADKGTGLGLSLTFGIIKDHGGRISALSPVPSEYMEFPAEFEHSAGPGTVFFV 675 Query: 212 LLE 214 L Sbjct: 676 ELP 678 >gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1364 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKIKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LE+ Sbjct: 866 FVITLER 872 >gi|15893728|ref|NP_347077.1| sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15023292|gb|AAK78417.1|AE007558_7 Sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] gi|325507851|gb|ADZ19487.1| Sensory transduction histidine kinase [Clostridium acetobutylicum EA 2018] Length = 637 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 27/226 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMR 68 I H++ +P+ I ++L+++D + + + LK + Sbjct: 379 TQFMGTISHELRTPLNIILSALQVMDLYANYGDLEEKCRVYEKYSVVMKQNGYRLLKMIN 438 Query: 69 LAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 T D I V K + E+ + ++ Sbjct: 439 NFMDITQIEDGARKLNFVQGNIVTIVEDVTLAVAAFLKDKGKNIIFDTDVEEKIMIFDKE 498 Query: 117 KILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-- 171 KI + A + + +++ D + S++ NG +K Sbjct: 499 KIERIVLNLLSNAVKFTGKDANIRVAIHDVGSNIQISVEDNGMGIPEDKKKMIFERFFQL 558 Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V LL + + + + L Sbjct: 559 DKTFTRKNEGSGIGLSIVKLLVELHDGTIEVKSKVGIGSEFTVKLP 604 >gi|77362188|ref|YP_341762.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] gi|76877099|emb|CAI89316.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas haloplanktis TAC125] Length = 927 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 18/236 (7%), Positives = 55/236 (23%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53 + K + + +L + + H+I +P+ I +LL + E +++Q Sbjct: 550 LIKAVGVANKANKTKSLFLANMSHEIRTPLNGILGMTQLLIKNSKIAADEQNELQMIQQS 609 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVS 103 + + + + +D + + + Sbjct: 610 AHNLLLILNEILDFSKIEANALKLDVQPTEIKKLIRQLATVFDNSGLSANVTFKLTIAPE 669 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 S ++++ N+ A G + + + G ++ Sbjct: 670 LPPFIALDSLRFSQVINNILSNAGKFTDTGLITMDCFVE-DDCLFIKITDTGIGISALQQ 728 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L L + + Sbjct: 729 QNLFIEFTQADVSTTRKYGGTGLGLTISKRLIELMGGSLTLRSEEGVGSCFKIKIP 784 >gi|332971703|gb|EGK10651.1| sensor histidine kinase [Desmospora sp. 8437] Length = 343 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 22/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSM 58 + K ++ S + L S I HDI +P+ +I ++ L + E+E + I + S Sbjct: 104 LEKIQVQSIKSQEARRRLLSSISHDIRTPLTSIIGYVDALKDDIASSEEEKREYIGIISK 163 Query: 59 SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + F L + I+ K + Sbjct: 164 KSNGLKQLIDEIFTMAKLDADEIPLKIESLDFAEIVRESLIEFLPEIKKHDLELKVIIPE 223 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +I+ N+ A RG + I + + +E + G + Sbjct: 224 EKYMITADRLSLMRIIGNIVKNAIHYGKRGKTLGIELTEKADEYQLLIWDQGPGISQVDI 283 Query: 164 ---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F ++ + + L +N R+ E I + K Sbjct: 284 GNVFERMHRSDGARNLSHGGSGLGLAIAKALVEKNNGRIWVESIPWEKTTFGFSIPK 340 >gi|313123614|ref|YP_004033873.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280177|gb|ADQ60896.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 552 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 20/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ +I S ELL+ E + ++ S+ + +RL+ Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124 I L V E A+ + R +I NL Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 + GK I+V++ + + I + G E +I + Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + E + + + Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSIFTVIFP 541 >gi|302552563|ref|ZP_07304905.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302470181|gb|EFL33274.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 534 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 20/226 (8%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAII 62 S V + H++ +P+ +I EL + I + + Sbjct: 280 RQQSETRVRQFVADASHELRTPLASIRGYAELTRRGREKVGPDTRHALGRIESEAGRMTL 339 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--------- 113 ++ + L D+ ++ D I+ + Sbjct: 340 LVEDLLLLARLDAGRPLQFEQTDLVPLVVDTISDARAAGQDHNWRLDLPDEPALVSADAA 399 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG 170 ++L+NL A P G VT VQ ++ NG P F + G Sbjct: 400 RLQQVLVNLLGNARNHTPPGTTVTARVQRRGTWLCVDVEDNGQGIPAELLPHVFERFARG 459 Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + V +A + + + + V + L Sbjct: 460 DSARSRATGSTGLGLAIVQAVATAHGGAVTVDSVPGR-TVFTVHLP 504 >gi|297516444|ref|ZP_06934830.1| phosphate regulon sensor protein [Escherichia coli OP50] Length = 345 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 69/215 (32%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ + LE++DE +E + + + L ++ Sbjct: 123 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 182 Query: 72 GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 T ++ + + + +V+E ++ + + + NL Sbjct: 183 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 242 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+ + FS++ NG PE ++ + Sbjct: 243 AVNHTPEGTHITVRWLRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 301 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ RL E S ++ Sbjct: 302 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 336 >gi|297539091|ref|YP_003674860.1| integral membrane sensor signal transduction histidine kinase [Methylotenera sp. 301] gi|297258438|gb|ADI30283.1| integral membrane sensor signal transduction histidine kinase [Methylotenera sp. 301] Length = 562 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 76/227 (33%), Gaps = 14/227 (6%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 + ++ + L + + + H++ +P+G + +S + LL E I +E ++ Sbjct: 332 LERSKENLTRAAKLAVVGEMAAAMSHEVRTPLGILRSSAQVLLREPNISEEGHEVCGFII 391 Query: 58 MSAIIRLKFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 K + F +T + + ++ + ++ + + Sbjct: 392 SETERLNKLVSALIDSARPRLPDFKHTDLAELAQQCVAMLRMQAENKKIELICEANEKAI 451 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++LLNL + A L GK+ + V S ++ + ++ NG E Q+ Sbjct: 452 ALCDVEQITQVLLNLLLNAIQVLQDNGKIILKVTSSIDQVLITVSDNGPGIPV-EHRNQV 510 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + N + + L Sbjct: 511 FEPFFSKRRGGIGLGLAIVKQIVMANHGNISVHQSNLGGAEFRLQLP 557 >gi|291285507|ref|YP_003502325.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O55:H7 str. CB9615] gi|290765379|gb|ADD59340.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli O55:H7 str. CB9615] Length = 785 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 418 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 477 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 478 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 537 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 538 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 596 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 597 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 648 >gi|257885995|ref|ZP_05665648.1| sensor histidine kinase [Enterococcus faecium 1,231,501] gi|257821851|gb|EEV48981.1| sensor histidine kinase [Enterococcus faecium 1,231,501] Length = 464 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 17/218 (7%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L L + I H++ +P+ + ++E + + I E +Q + + + Sbjct: 245 LRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNIEVIN 304 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLN 121 D L + + + + ++ +++ + ++++N Sbjct: 305 KIEAKYDHLNKTEFNIYKLIESVIENFASKIESKNLHVEIQGDNINISADKDKMNQVVIN 364 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTI 176 L A + G + S+ +K+ + ++ NG F + + + Sbjct: 365 LLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSRSRAL 424 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + +K + + L Sbjct: 425 GGQGIGLAIVKSVVEAHKGSITVKSKLGLGTKFVIKLP 462 >gi|228951780|ref|ZP_04113879.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807902|gb|EEM54422.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 468 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + E D + L Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457 >gi|197120953|ref|YP_002132904.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170802|gb|ACG71775.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 414 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 60/205 (29%), Gaps = 9/205 (4%) Query: 18 LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRL-KFMRLA 70 + + + H+I +P+G I + EL+ + E + + F+ LA Sbjct: 207 MAAMVAHEIRNPLGVIRGAAELVRARSGAALAPRDQEALADVLGEVERLRRLTEDFLDLA 266 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS- 129 + + + V+V+ + + + + A++ L + + Sbjct: 267 RDPAIAAEPADLAELAAEAARALGRAHPSVEVALSVPPLRVRADAARVRQVLANLLENAA 326 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 L +V ++ + ++ +G ++ + + + Sbjct: 327 LAGARRVAVTGGPAGPMARLEVRDDGPGVDAA-VRARLFEPFASGRARGAGLGLAISRRI 385 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 A + L + L Sbjct: 386 AERHGGALELADPGPPGAAFALTLP 410 >gi|194367205|ref|YP_002029815.1| response regulator receiver sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194350009|gb|ACF53132.1| response regulator receiver sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 503 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 66/227 (29%), Gaps = 16/227 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59 + ++ ++LL + + HD+ + + + +LL + + +I Sbjct: 140 ETELMRAQRLESLSLLAAGLSHDLRNILQPLLIMPDLLKARTDDPQLHHLADVIAECGRR 199 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------S 112 + M + I + + + + + V + D Sbjct: 200 GHEMAESMLSFVRGSRKPSERIEIDGLFDAVALLLRSNVPDAVRLELQVQDQGLVVDANY 259 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQI 167 E +++LNL + A ++P GG+++++ + + G + + + Sbjct: 260 TELQQVMLNLALNAIQAMPNGGRLSLTASHAGQRDGVDWMQIRVVDEGIGM-DADTLSHL 318 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + + L Sbjct: 319 FNPFFTTKADGTGLGLISCKRIVEGAGGSIHVSSQPGQGTCFELRLP 365 >gi|118479215|ref|YP_896366.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam] gi|196045893|ref|ZP_03113122.1| sporulation kinase B [Bacillus cereus 03BB108] gi|225865992|ref|YP_002751370.1| sporulation kinase B [Bacillus cereus 03BB102] gi|229186251|ref|ZP_04313418.1| hypothetical protein bcere0004_37960 [Bacillus cereus BGSC 6E1] gi|118418440|gb|ABK86859.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam] gi|196023333|gb|EDX62011.1| sporulation kinase B [Bacillus cereus 03BB108] gi|225787116|gb|ACO27333.1| sporulation kinase B [Bacillus cereus 03BB102] gi|228597201|gb|EEK54854.1| hypothetical protein bcere0004_37960 [Bacillus cereus BGSC 6E1] Length = 424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|148654298|ref|YP_001274503.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566408|gb|ABQ88553.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 382 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 22/227 (9%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK 65 L L + + H++ +P+ I +E L + +++ LIR + + Sbjct: 143 RTEQRRLA--LIADVAHELRTPLTTIEGYMEGLLDGVIAPDEQTFTLIRHEAARLRRLTE 200 Query: 66 FM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + R+ L L Q V+ R+ +S + + Sbjct: 201 ELGLLSRAEAGELRVQPRLFDLCTMLQELIARFQPQFAACEVELRLYLSVQSLTVYADPD 260 Query: 115 R-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170 R ++++NL A P GG V +S+ S++ G F + Sbjct: 261 RLMQVMVNLLSNALRYTPAGGLVEVSLTPLGEYVRISVRDTGIGIEAEHLPLIFERFYRV 320 Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + I L + + + E L Sbjct: 321 DKSRTRNSGGTGIGLTIARHLVYASGGEIWAESDGAGKGSTFHVTLP 367 >gi|42783105|ref|NP_980352.1| sporulation kinase B [Bacillus cereus ATCC 10987] gi|42739033|gb|AAS42960.1| sporulation kinase B [Bacillus cereus ATCC 10987] Length = 424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|83311066|ref|YP_421330.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945907|dbj|BAE50771.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 566 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 72/244 (29%), Gaps = 31/244 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQ 51 + + + S + +L L + I H+I +P+ +I N L + Sbjct: 318 LRETQVHLIQSEKMASLGQLVAGIAHEINNPLSFALSNVFSIENWLAAVMTEAAPCLSED 377 Query: 52 LIRLSSMSAII-----------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 + + F RL G +VD + + + + Sbjct: 378 HLVKLDKARKRIADTGQGLERVRELVVKLRTFSRLDEGEFKTVDIKEAVESVLLFLRHKM 437 Query: 95 AVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152 + V+ ++ + + ++++N+ A ++ G +T+ ++ Sbjct: 438 SDRIEVRRNFAEDNMLACYAGQLNQVIMNVVANAVDAIEGKGVITVRTFRQDGMFAIAVS 497 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G+ PE +I D + + + + R+ + Sbjct: 498 DTGSGI-PPEIQERIFDPFFTTKPVGQGTGLGLSISYGIIKSHDGRIEVSSHPGQGTEIR 556 Query: 211 ALLE 214 L+ Sbjct: 557 ILIP 560 >gi|37523003|ref|NP_926380.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35214006|dbj|BAC91375.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 640 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 75/238 (31%), Gaps = 31/238 (13%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAII-- 62 ++ + L I HD+ + + I + +LL ++ + ++L+R+ ++ Sbjct: 264 LRAQRLESLGTLAGGIAHDLNNILTPIVAAAQLLPLRLTDLDQQDLRLLRMLEENSRRGS 323 Query: 63 -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113 L F R G + LG++ Q++ +++ + + + + Sbjct: 324 HLVTQILSFARGMEGRRTILQIRHLLGEVGQIVRQTFPKSIEIRIDASAQDLWTIQADAT 383 Query: 114 ERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLA 158 + ++ +NL + A ++P I + + ++ G Sbjct: 384 QMHQVFMNLCVNARDAMPAGGVLTLTARNLIVDEHYARLIPDAAAGAYVVVTVSDTGTGI 443 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I + + + V+ + + + L Sbjct: 444 -TPEIVEKIFEPFFTTKELGKGTGLGLSTVLGIVKHHGGFVGVYSEPGRGTEFRVHLP 500 >gi|47565887|ref|ZP_00236926.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein protein [Bacillus cereus G9241] gi|228987195|ref|ZP_04147316.1| hypothetical protein bthur0001_38670 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157589|ref|ZP_04285665.1| hypothetical protein bcere0010_37700 [Bacillus cereus ATCC 4342] gi|47557167|gb|EAL15496.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein protein [Bacillus cereus G9241] gi|228625867|gb|EEK82618.1| hypothetical protein bcere0010_37700 [Bacillus cereus ATCC 4342] gi|228772424|gb|EEM20869.1| hypothetical protein bthur0001_38670 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] Length = 1389 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 31/239 (12%) Query: 5 ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53 + +L L S I H++ +P+ I +E L + +I Sbjct: 338 QAQQRRAEELAELDRAKTTFFSNISHELRTPLTLIMGPVEELRTRLSGAGEEVHAELDVI 397 Query: 54 RLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101 + + + + V+ ++ V + Sbjct: 398 HRNGLRLGKLVNTLLDFSRLEAGRMQARYEPVELAAVTAELASVFRSAVERAGLTLDVDC 457 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + K++LNL A G V + V+ S + + + G Sbjct: 458 PALDEPVYVDRAMWEKVVLNLLSNALKFT-FEGAVRVRVRRSGPDAVVVVADTGTGVPEA 516 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E ++ + + + I V L + + E + + + Sbjct: 517 E-MPRLFERFHRIENARARSHEGSGIGLALVRELVGLHGGTIDAESTEGVGTTFTLRIP 574 >gi|322805362|emb|CBZ02926.1| two component system histidine kinase [Clostridium botulinum H04402 065] Length = 451 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + +++ + L L S I H+I +P+ + N+LE + + + +E + + Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272 Query: 55 LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101 + L + + F + + + I + ++ Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQKIFLDELIADICSDFYAIAENKNIKLQYHIE 332 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL A GG+V I + S + +K NG + Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392 Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F ++ G+ + I V + + + E + + Sbjct: 393 DLPFIFERLYRGDKSRHQFKGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKVYFHR 450 >gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913] Length = 896 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + H+I +PI I L + + I + + Sbjct: 513 LRQEKQKADEASAIKSQFLANMSHEIRTPINGIKGMHYLALQQQDWQQAKGYIEQADGAL 572 Query: 61 IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + + + Q + ++ +++ Sbjct: 573 SVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKSLSLKLEYDSDA 632 Query: 107 EK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 +ILLNL A + G +T+ + S FS+ G + Sbjct: 633 HLILNTDPIRLKQILLNLLNNAVKFTAK-GCITLKIWQSSKMTYFSVNDTGIGISSAAQK 691 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + + + H + L Sbjct: 692 QLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGSTFTFSLP 746 >gi|301162296|emb|CBW21841.1| putative two-component sensor histidine kinase [Bacteroides fragilis 638R] Length = 792 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 18/229 (7%), Positives = 58/229 (25%), Gaps = 21/229 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSM 58 +L + + H+I +P+ AI +L + + ++++I ++ Sbjct: 552 KQMAEKAELKQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNE 611 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + + + +I + + + Sbjct: 612 LLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIRSSLQFRLELDDTVPV 671 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A+ + V E ++ +G E Sbjct: 672 PVHTDRLRFAQVISNFLNNANKFTQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMM 731 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ R+ + +L Sbjct: 732 IFERFYKTDEFEQGSGLGLAISKVIIERLSGRIKVHSEKGKGSCFTVIL 780 >gi|260574718|ref|ZP_05842721.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter sp. SW2] gi|259023135|gb|EEW26428.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter sp. SW2] Length = 346 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 19/226 (8%), Positives = 57/226 (25%), Gaps = 29/226 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 + + H++ +P+ A+ +E L D+ G + + ++ + ++ + Sbjct: 119 FVANVSHELRTPLTALVGFIETLQGAARDDAGARERFLTIMAREAGRMNRLVQDLLQLSR 178 Query: 73 YTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Q+ + + + + + ++L Sbjct: 179 VESEERLRPTEMLDIVALIRGVKATLRQLADATAVTVQMTGIEAPVLLAADADQITQVLH 238 Query: 121 NLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD- 169 NL A + ++ G + Sbjct: 239 NLIENAVKYGGPGKTVTIETSLIARDPVLRGPGVRITVTDQGEGIDPVHLPRLTERFYRV 298 Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + ++ RLL + S +L Sbjct: 299 DSHRSREMGGTGLGLAIVKHIVNRHRGRLLIDSEKGKGSRFSVILP 344 >gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] Length = 554 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 59/233 (25%), Gaps = 24/233 (10%) Query: 4 NICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56 + + +L A L + H+I +P+ AI LL +++I+ + Sbjct: 179 ELEEARRNAELAGEQKTAFLA-NMSHEIRTPLNAIVGFAGLLGTASDQDRISYVEIIKGN 237 Query: 57 SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + L I ++ + V R+ Sbjct: 238 TNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEGIFRLRLEEADVPVRIIFEPK 297 Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++++ N A +G +N F + G + Sbjct: 298 LPVCFIHTEKNRISQVISNFLSNAFKYTVQGSITMGYEIR-ENGICFYVSDTGTGIPEDK 356 Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + +L Sbjct: 357 VSQVFERFTKLDAKRQGTGLGLSISRTIIKKMGGEIGVTSKYGEGSTFWFVLP 409 >gi|253563388|ref|ZP_04840845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5] gi|251947164|gb|EES87446.1| two-component system histidine kinase [Bacteroides sp. 3_2_5] Length = 792 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 18/229 (7%), Positives = 58/229 (25%), Gaps = 21/229 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSM 58 +L + + H+I +P+ AI +L + + ++++I ++ Sbjct: 552 KQMAEKAELKQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNE 611 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + + + +I + + + Sbjct: 612 LLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIRSSLQFRLELDDTVPV 671 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A+ + V E ++ +G E Sbjct: 672 PVHTDRLRFAQVISNFLNNANKFTQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMM 731 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ R+ + +L Sbjct: 732 IFERFYKTDEFEQGSGLGLAISKVIIERLSGRIKVHSEKGKGSCFTVIL 780 >gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris str. B100] gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris] Length = 1364 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I ++ ++ + Sbjct: 687 RSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 747 PRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKIKLLFSVRDTGI 806 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEVESVPGRGSEFY 865 Query: 209 LSALLEK 215 LE+ Sbjct: 866 FVITLER 872 >gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 77/241 (31%), Gaps = 30/241 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54 A+ S + + + H++ +P+ AI E+L E QLI Sbjct: 400 ARERAETASRTK--SRFLANMSHELRTPLNAIIGFSEILRMQMFGALGHPRYTEYAQLIN 457 Query: 55 LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQV------IEDFIAVDKRV 100 S + + + + +VD+ + ++ V K Sbjct: 458 ESGALLLDLISDILDMSKIEAGKYELHPETVDAAALIESCVRLVRGRAEENGIHLVKKIQ 517 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 G + R +I+LNL + P GG++++++ +++ F++ G Sbjct: 518 CAELGGTLVADERALKQIMLNLLSNSAKFTPAGGRISVALTETEETICFAVADTGRGIPA 577 Query: 161 PEKFTQIVDGNVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + V LA + + + ++ L Sbjct: 578 DQI-ARLGQPFEQIATDAALSKEGTGLGLALVRSLAELHGGSMAIDSELGVGTTVTVTLP 636 Query: 215 K 215 K Sbjct: 637 K 637 >gi|94264440|ref|ZP_01288229.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455130|gb|EAT05352.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 505 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 26/240 (10%) Query: 2 AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 KN S DL I HD+ P+ I++ ++LL+ + + + Sbjct: 256 RKNRQLEEKSADLARSNAELEQFAYVISHDLRQPLRMINSYMKLLERALDDKLDDETREM 315 Query: 56 SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + + ++ L + + E + +++ + ++ Sbjct: 316 MGFAAGGAQRMDQMLVSLLEYSRVGRKGEPMVPLASRQALDEALDFLAPKIKETGATVRL 375 Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLAR 159 E ++ NL A + + F++ NG Sbjct: 376 SGDWPEIAASRDEFTRLWQNLIGNALKYRDPDRVCEVEISVTPEDEGWRFTVADNGIGID 435 Query: 160 F--PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 ++ ++ + I + + R+ E L K Sbjct: 436 PKQFDRLFKVFQRLHTRDKYEGSGIGLAVARKIVERHGGRIWVESQGAGQGCRFIFTLPK 495 >gi|29348380|ref|NP_811883.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253569248|ref|ZP_04846658.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29340284|gb|AAO78077.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251841267|gb|EES69348.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1346 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78 I H+ +P+ I +E+L ++ + V I+ +A + + Sbjct: 827 NISHEFRTPLTLILGQIEVLMQMDLGTTVYNRIQRIYKNAWHMRNLISELLDFRKQEQGY 886 Query: 79 ----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125 E + + E I + + ++ +F Sbjct: 887 LKLRVEEQNLVTFTRQIYMCFYEYAQKKEITYRFDSVEETISVWFDPIQLQKVIFNLLSN 946 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-------S 178 A G +T+ V+ ++ + S+ G Sbjct: 947 AFKYTSNKGNITVEVRKVASQAVVSVCDTGIGIPVEHISKIFDRFYQTDNASSSSSFTLG 1006 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + ++ E L Sbjct: 1007 TGIGLALAKGIMNMHHGKIEVESTVGEGTKFILSLP 1042 >gi|53712586|ref|YP_098578.1| two-component system histidine kinase [Bacteroides fragilis YCH46] gi|52215451|dbj|BAD48044.1| two-component system histidine kinase [Bacteroides fragilis YCH46] Length = 792 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 18/229 (7%), Positives = 58/229 (25%), Gaps = 21/229 (9%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSM 58 +L + + H+I +P+ AI +L + + ++++I ++ Sbjct: 552 KQMAEKAELKQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNE 611 Query: 59 SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + + + +I + + + Sbjct: 612 LLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIRSSLQFRLELDDTVPV 671 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A+ + V E ++ +G E Sbjct: 672 PVHTDRLRFAQVISNFLNNANKFTQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMM 731 Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + ++ R+ + +L Sbjct: 732 IFERFYKTDEFEQGSGLGLAISKVIIERLSGRIKVHSEKGKGSCFTVIL 780 >gi|332360673|gb|EGJ38482.1| sensor histidine kinase [Streptococcus sanguinis SK49] Length = 344 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + S ++ +++ HDI +PI +I ++E + + + + I Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165 Query: 57 SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103 + ++ + + LI + Q++ + D +QVS Sbjct: 166 TERLNKLVEELDILTLNAQPQIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 KI ++ ++ILLNL A G K+ I Q ++ S+K G Sbjct: 226 PESAKIKSHYDKLSRILLNLLNNAFKYSDPGTKIEIVAQLTEQILTISVKDEGRGISPEN 285 Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F ++ H + LAH+ + E + L Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVESQYGLGSTFTFTL 341 >gi|322412684|gb|EFY03592.1| histidine kinase protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 342 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 75/236 (31%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 + + S +++ +++ HDI +P+ +I ++E + + E + I Sbjct: 106 LEASFESLNESEHEKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPKEEERHYLNTISRQ 165 Query: 57 SMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + ++ + LI + Q+ + ++V+ Sbjct: 166 TNRLNQLVEELHVVSLNDQKQKEKQHRQVIYLEKLLIDILSEFQLTLEQENRSVDIKVAP 225 Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 KI+ + ++I+LNL A +TI ++ G + + Sbjct: 226 EVVKINSQYDALSRIILNLVSNALKYSEASTPLTIHAYRQDQSICIDVRDKGQGIKKEDL 285 Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ H + Y LAH+ ++ E + LL Sbjct: 286 PLIFKRLYRVEASRNMKTGGHGLGLYIAKQLAHQLSGDIVVESQVGKGSSFTLLLP 341 >gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] Length = 951 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 64/239 (26%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M +++ ++ + + + + + H++ +P+ I +L+LL + + +L+ Sbjct: 450 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDANRLVTAM 509 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100 S+ + LK + ++ + + E + I + Sbjct: 510 QNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYLPLVVKKRLVLYCYI 569 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + + ++L NL A G V +F ++ G Sbjct: 570 DPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACCDDGYLVFKMRDTGVGIDT 629 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + Sbjct: 630 RAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEFGIRIP 688 >gi|283781850|ref|YP_003372605.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283440303|gb|ADB18745.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 760 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 65/243 (26%), Gaps = 34/243 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSM 58 AK + N + LL + + H++ +P+ AI +L+ E + +IR ++ Sbjct: 246 AKEVAENANREK--DLLLANVSHELRNPLHAILGYSDLVLRDLPSSVAREHLAIIRDAAE 303 Query: 59 SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVI-------------EDFIAVD 97 + + + + VD + + Sbjct: 304 TQLRLVNDLLDISQLTSSTLRLQLEPVDPHSIIRRCLSITAPLATQKNIQLRLIPHTQKG 363 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156 + + + ++L NL A G + D ++ +++ G Sbjct: 364 QSLAENAPTYVEADPLRLLQVLWNLVTNAIKFSEHGEVTIHTCTDWEHSRFTITVRDRGP 423 Query: 157 LARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E+ +I D + + L + E + Sbjct: 424 GIGLAEQT-KIFDPFYQIDTSLERKHGGIGLGLAICKFLVEGMGGSIRLESELSQGSEFT 482 Query: 211 ALL 213 L Sbjct: 483 IEL 485 >gi|262198688|ref|YP_003269897.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262082035|gb|ACY18004.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 524 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 74/232 (31%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSR--ICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55 A+ + L AL + + HD+ SPIGAI NS ELL E E++ +I Sbjct: 294 ARLHQALVDKEKLSALGQAMGYVVHDLRSPIGAIVNSTELLRYELGEDSESRELLDIIEE 353 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ +AI + + + +V V+ RV G Sbjct: 354 AADNAIAVVDDVLDFTREGIPSRKECEIAEVLGRLERSLEVRVRECGVNFRVTGPREGSL 413 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKF 164 + R+ + L NL + A ++ I V +E F + NG Sbjct: 414 LCDPRKVHRALENLAVNALDAVASSPTSAPAVWIEVAQEADEVRFLVCDNGPGIAPT-IM 472 Query: 165 TQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + V + + + + L + Sbjct: 473 RRLFEPFATAGKENGTGLGLAIVKQIVTAHGGSITVDSSS-AGTSFVVTLPR 523 >gi|255283041|ref|ZP_05347596.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] gi|255266343|gb|EET59548.1| sensor histidine kinase [Bryantella formatexigens DSM 14469] Length = 351 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 23/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57 + ++ + + + H+ +PI +I + L E + ++LI + Sbjct: 121 TKELRSTKEEMDSFVN-NLAHEFKTPITSISGFADYLYQTGGSIETEERMQFLKLISDQA 179 Query: 58 MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + D + + + Sbjct: 180 QRLSSLSQNTLLLSKLEACQIVTEKETFALGEQIKQCVILLLRQFDEKHITVDIPEEFDF 239 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + ++ +NL A P GG VT+ + + S+ G E + Sbjct: 240 DYCGNKELMEQVWINLLNNALKFTPEGGTVTVRCARTDSSLKISVADTGVGMN-QETQER 298 Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D ++ + I V + + E L Sbjct: 299 IFDKYYQNDTSSLTKGNGIGLSIVRRITELCGGSIAVESQPGCGSTFMVFLP 350 >gi|253700689|ref|YP_003021878.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775539|gb|ACT18120.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 752 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 30/238 (12%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRL 55 L S + A+ L + HD + +G I + EL ++ Sbjct: 376 EQLLQSQKMEAVGKLAGGVAHDFNNMLGVIIGNAELAMMGVEPSGKLHDRLQGILDAANR 435 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S+ L F R +D + +G + +++ I D V S + + + Sbjct: 436 SAEITRQLLAFSRQQHAEPKVLDLNVVIGKMLKMLHRLIGEDIEVVWSPGQDIWKVKLDP 495 Query: 116 ---AKILLNLFMVAHASLPRGGKVTISV--------------QDSKNENIFSLKINGNLA 158 +I+ NL + A ++ G++ I + + +G Sbjct: 496 SQLDQIMANLCVNARDAIAGIGRMDIRTENVELSPEKRGPAEMPQGRCVMLEVSDSGCGM 555 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + V + +N + Sbjct: 556 -RREVMERIFEPFYTTKEVGRGTGLGLATVFGIVKQNDGHIEVRSEPGAGTSFRLYFP 612 >gi|170745452|ref|YP_001766909.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170659053|gb|ACB28107.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 916 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 72/246 (29%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56 +A+ S + A+ L + HD + + I SLEL+ + + L R Sbjct: 528 LARTEEALRQSQKMEAVGQLTGGLAHDFNNLLAGISGSLELMQTRMSQGRMGDLERYMTV 587 Query: 57 --------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + L F R + + D+E+++ + ++V Sbjct: 588 AQGAAKRAAALTHRLLAFSRRQTLDPKPTNVNRLVKDMEELVRRTVGPSIHLEVVGLSGL 647 Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKV--------------TISVQDSKNENIFSL 151 + ++ LNL + A ++P GG++ + Sbjct: 648 WPALIDPGQLENALLNLCINARDAMPDGGRITIETANKWIDEAGGRQHDLSPGQYLSVCV 707 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + ++ + + + + V A ++ ++ + Sbjct: 708 TDTGTGM-SADLVDKVFEPFFTTKPTGEGTGLGLSMVYGFARQSGGQVRIYSEVGEGTTV 766 Query: 210 SALLEK 215 L + Sbjct: 767 CLYLPR 772 >gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 947 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + + L L + + H++ +P+ +I +L ++ E ++ + Sbjct: 549 LDQEQRARQHAEQLNRLKDEFLATVSHELRTPLQSILGWARILRTGEVDAESLERGLATI 608 Query: 58 MSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101 + T VD L ++ Sbjct: 609 ERNAKAQSQLIEDVLDASTILAGKLQLRTDPVDVRQVLATALDLVRPAALAKGVAVDTSV 668 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 G + + +++ NL A P GG+V + + ++ NG Sbjct: 669 ADDVGIFLGDAERLQQVVWNLLANAVKFTPSGGQVRALARRVEATLEVEVEDNGEGIPKS 728 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + DG + + V LA + E + L Sbjct: 729 FLPFLFERFRQADGGMTRAHGGLGLGLAIVRHLAEAQGGSVHAESDGEGKGARFRVRLP 787 >gi|37676294|ref|NP_936690.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37200835|dbj|BAC96660.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 984 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + G+ + + + S Sbjct: 472 AKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQKRYADIINRSGK 531 Query: 62 IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ +S L + + + ++ Sbjct: 532 NLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVN 591 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A +G + +N F + G E+ Sbjct: 592 HYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQ 651 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + + ++ + + Sbjct: 652 ATLFDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVP 706 >gi|148264080|ref|YP_001230786.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146397580|gb|ABQ26213.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 1021 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 29/234 (12%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSA 60 + ++ + L I HD + + I +++ E + + + Sbjct: 628 VQKIEAIGQLAGGIAHDFNNLLTPIIGYADMIQHKLPEGDPLSGKVNGITAAAFKARDLT 687 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L F R SVD LG+ + ++ I + + + I + +R +I Sbjct: 688 QQLLSFGRKQMLDMKSVDLNQVLGNFQDILRRTIRENITIDIRLASGGIAIWADRGQIEQ 747 Query: 121 NLFM---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPE 162 L A ++ G + + + NG E Sbjct: 748 ILLNLVVNAQDAISGNGMILMETGHVMLDNEYTRLHPGVQPGPYALLDFSDNGCGMN-DE 806 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + V + +++ + + S L Sbjct: 807 TLSHIFEPFFTTKQVGHGTGLGLATVYGIIKQHEGYISVKSRVGEGTTFSIYLP 860 >gi|318604800|emb|CBY26298.1| osmosensitive K+ channel histidine kinase KdpD [Yersinia enterocolitica subsp. palearctica Y11] Length = 899 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + ++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLNHHHIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + NG + Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + L Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883 >gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 547 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 72/245 (29%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELL----------DEVGI 45 + ++ +L + + + H++ +P+ AI E L ++ Sbjct: 294 ERTAELAAANKELAEISQYKTEFLANMSHELRTPLTAILAFTEELLTKSMGQLNAEQEEY 353 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDK 98 ++ R L ++ G +++ G+ + + + +D Sbjct: 354 LKDIRDSGRQLLNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVEKLLRPLAQQKNIDM 413 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKING 155 + ++ T I + +++ NL A P R + ++K +G Sbjct: 414 QSAITGTNVIIADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRDTDRPDEGVLLTVKDSG 473 Query: 156 NLARFPEKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 ++ +I D + + V + + + E + Sbjct: 474 PGIPAKDR-ARIFDSFYQGHRGRNKEYGGTGLGLALVKRIVEMHLGEITLESTEGQGSAF 532 Query: 210 SALLE 214 + L Sbjct: 533 TVYLP 537 >gi|317130174|ref|YP_004096456.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475122|gb|ADU31725.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 475 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 65/219 (29%), Gaps = 24/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69 S I HD+ +PI I ++ + + +I + + + L Sbjct: 253 SHISHDLRTPITYIKGYSAVMKDAKTVEKEDLKRNLNVIYNEATRMEQLVSDLFLLTKLE 312 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L L + ++ D + R+++ +++ + + ++ L Sbjct: 313 EGKIKLEMELVPIGVWLENLYESRALMFDQKRIKHRIEIDKHCQELMIMMDSYRMEQALI 372 Query: 124 M---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI- 176 A P+ G++ + ++ NE +K G + + + + Sbjct: 373 NLIENAIRHTPKDGEIELILRKDDNEVTVCVKDTGCGISKHDLPHIWERFYKADASRNRN 432 Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ ++ S L Sbjct: 433 DSGTGLGLAIVKEVVEAHQGKVDVYSKLGKGTTFSIHLP 471 >gi|269961047|ref|ZP_06175416.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834266|gb|EEZ88356.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 601 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55 + + + L L + + I H++ +P+ AI + E L E + V + Sbjct: 357 LRLTQDELMQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLEKEKFERVEDNLTR 416 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103 S + + + + + + + Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGNELVHTHLLPVIASVKELMKPALKSARVTLETNLLQ 476 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLAR 159 E + + ++L+NL A +L + + NG Sbjct: 477 QDVEVQINTIQLEQVLVNLLTNAIEALKEHDDKQVVLSVEQDSEAKLVWIHVDDNGTGLG 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + +L + + S L Sbjct: 537 AFTLSE-LCEPFLTNKQNGLGLGLSISQQILAGMNGKLSAQNREQGGARFSLCLP 590 >gi|288933211|ref|YP_003437270.1| integral membrane sensor signal transduction histidine kinase [Klebsiella variicola At-22] gi|290512015|ref|ZP_06551383.1| two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [Klebsiella sp. 1_1_55] gi|288887940|gb|ADC56258.1| integral membrane sensor signal transduction histidine kinase [Klebsiella variicola At-22] gi|289775805|gb|EFD83805.1| two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [Klebsiella sp. 1_1_55] Length = 451 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + L N+ + A Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 G + +S + F ++ +G + F V G+ + + V + Sbjct: 353 NGWIKVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + RL + +++ A L Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437 >gi|237510628|ref|ZP_04523343.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346] gi|235002833|gb|EEP52257.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346] Length = 723 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHPRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|206580141|ref|YP_002236224.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae 342] gi|206569199|gb|ACI10975.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae 342] Length = 451 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + L N+ + A Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 G + +S + F ++ +G + F V G+ + + V + Sbjct: 353 NGWIKVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + RL + +++ A L Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437 >gi|182412789|ref|YP_001817855.1| histidine kinase [Opitutus terrae PB90-1] gi|177840003|gb|ACB74255.1| histidine kinase [Opitutus terrae PB90-1] Length = 1177 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 25/232 (10%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM---S 59 L S+ +L I HD + + I +L L L + + + ++ +R Sbjct: 786 QRAARLESL---GVLAGGIAHDFNNLLTIIIGNLGLALADGKLSESTIRFLREIERGATR 842 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RE 114 A + + + I + + + V+ + + Sbjct: 843 ARSLTRQLLTFAEGGEPLRLPIEAPEFVRAAAERALHGSAVRAEYVVPPGLWHVLADKDQ 902 Query: 115 RAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFPE 162 A+ + NL + A ++P G + + +L +G PE Sbjct: 903 IAQAIQNLVVNAIQAMPNGGALLVTFSNETIGAGDKNNLEHGRYVKITLADSGEGI-RPE 961 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + V + + + + + + L Sbjct: 962 VLPRIFDPYFTTRRTGSGLGLATVYSILKRHAGSIEVDSRVGYGTTFTLRLP 1013 >gi|160882267|ref|ZP_02063270.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483] gi|156112356|gb|EDO14101.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483] Length = 754 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%) Query: 3 KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44 K+ L + L+A + + H+I +P+ +I +L Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572 Query: 45 -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +++LI + I +M +F + + + QV+ + Sbjct: 573 GTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRLEFLK 632 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158 + E ++L N A K+ + ++ G Sbjct: 633 EVDNIPLEINVDRERLIQVLTNFLNNASKFTEIGYIKLGYIYLPDEGHVRIYVEDTGRGI 692 Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ ++ + ++ + R+ + + +L Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGRIDLKSEVGKGSRFTVILP 749 >gi|123443178|ref|YP_001007152.1| sensor protein KdpD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090139|emb|CAL13002.1| two-component regulatory protein sensor kinase KdpD [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 899 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + ++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLNHHHIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + NG + Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + L Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883 >gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] Length = 1389 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 62/217 (28%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S + H++ +P+ ++ +LL + + + + + + + + Sbjct: 1012 SILSHELRNPLNSMLGWSKLLQKKQFDQATINKGLAAIERSAQAQAHLIKDLLDISRISA 1071 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSRERAKILLNLF 123 D +++ + V + + + ++ NL Sbjct: 1072 GRLRIDAQKLDLVSVIESAMEVVRFSAEAKNIQIESNLAPAPRSMVGDANRLQQVFWNLL 1131 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDS 178 A P GGKVTIS+ + + + G + DG+ + Sbjct: 1132 SNAIKFTPSGGKVTISLDYTDFQAQIQISDTGYGISADFLPHVFERFRQADGSRTRSNPG 1191 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + + E + + L Sbjct: 1192 LGLGLSIVRYLVELHGGTIDAESQGEGQGATFTVRLP 1228 >gi|331655920|ref|ZP_08356908.1| putative histidine kinase [Escherichia coli M718] gi|331046274|gb|EGI18364.1| putative histidine kinase [Escherichia coli M718] Length = 753 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59 + + + V L + HD + + I SLEL++ + +Q ++ Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445 Query: 60 -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R + +V+ L ++ +++ + +++ + +++ Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 505 Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + A ++ +VT S ++ + +G+ + Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564 Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Q+ + + + V ++ R+ E + L + Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616 >gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 544 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 69/251 (27%), Gaps = 40/251 (15%) Query: 2 AKNICFNLSSMDLV------------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49 A+ + + + L A L + H+I +P+ AI +LL E + E Sbjct: 138 AEELEQKMMQLSLAQKAAEAANIAKSAFLA-NMSHEIRTPMNAIIGMADLLWETSLTKEQ 196 Query: 50 MQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93 + + + + + + Q F Sbjct: 197 REYVGIFRTAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQANIKF 256 Query: 94 IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIF 149 +++ +++ G + +IL+NL A +G + I +Q+ F Sbjct: 257 LSLSYQIKPDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEKLSMQEENVFLKF 316 Query: 150 SLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 S+ G EK I + S + L + E Sbjct: 317 SVSDTGIGI-EKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGHIGVESEI 375 Query: 204 DHNVVLSALLE 214 + ++ Sbjct: 376 EQGSTFFFSIQ 386 >gi|229176936|ref|ZP_04304331.1| hypothetical protein bcere0005_3160 [Bacillus cereus 172560W] gi|228606411|gb|EEK63837.1| hypothetical protein bcere0005_3160 [Bacillus cereus 172560W] Length = 369 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D+L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367 >gi|225023058|ref|ZP_03712250.1| hypothetical protein CORMATOL_03106 [Corynebacterium matruchotii ATCC 33806] gi|305682103|ref|ZP_07404907.1| signal transduction histidine-protein kinase/phosphatase MprB family protein [Corynebacterium matruchotii ATCC 14266] gi|224944281|gb|EEG25490.1| hypothetical protein CORMATOL_03106 [Corynebacterium matruchotii ATCC 33806] gi|305658576|gb|EFM48079.1| signal transduction histidine-protein kinase/phosphatase MprB family protein [Corynebacterium matruchotii ATCC 14266] Length = 517 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 19/238 (7%), Positives = 63/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD-----------EVGI 45 + + L+++D A L + H++ +P+ ++ ++ELL + Sbjct: 234 LTMSFNQMLAALDQSRQRQAQLVADAGHELKTPLTSMRTNIELLMLLQKPGAPQISDEEK 293 Query: 46 EDEVMQLIRLSSMSAIIRLK--FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + ++ + + + + + E V+ Sbjct: 294 KALEHDVMAQMEELSTLIGDLVDLAREDAAETELQETDLAQVAQTAFERVRRRRPDVEFR 353 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLAR 159 L + + + + + + + ++ +G Sbjct: 354 LHVTPWYLWGDAHSLGRAILNLMDNAAKWSPADGVVRVKMTRLDEGRMQITISDSGPGIP 413 Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F + ++ + V + + + E +D + +L Sbjct: 414 EEEREKVFERFYRCIQSRSMPGSGLGLAIVRQVVDRHGGSITAEESEDGGAMFRMILP 471 >gi|167840004|ref|ZP_02466688.1| sensory box histidine kinase [Burkholderia thailandensis MSMB43] Length = 709 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 64/232 (27%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 475 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 531 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 532 ATRMQSLIDDLLSYSRVGRLEDARQPVDGERALDEALRNLSAAIRESGAQITHDRLPVVH 591 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167 +++L L + ++ K ++ + +F ++ NG P+ F +I Sbjct: 592 GIAAQLVLLLQNLIGNAIKFRSKDRVAQIHLEADARDDAWVFRVRDNGIGI-DPQYFERI 650 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 651 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGRGTTFSFTLSR 702 >gi|149914993|ref|ZP_01903522.1| C4-dicarboxylate transport sensor protein DctB, putative [Roseobacter sp. AzwK-3b] gi|149811181|gb|EDM71018.1| C4-dicarboxylate transport sensor protein DctB, putative [Roseobacter sp. AzwK-3b] Length = 586 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 +A S L AL + + + H++ P+ A+ L LL+ + Sbjct: 347 LAVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLNRNRPDEALSSFQR 406 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGE 107 + LI + R + V+ L + + + E Sbjct: 407 IDDLIERMGSITRQLKSYARQSGDTFAPVNLGDALSSALSMMEPQLRQRHVNITRTLPEE 466 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEK 163 + + +R ++ + + ++ + D + +++ NG+ E Sbjct: 467 PVLVMADRVRVEQVMINLLRNAMDATEGTDDASIDILLAAGETAVLTVRDNGHGI---ED 523 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + D + + ++ RL V L Sbjct: 524 FDNLFEPFYTTKQPGDGVGLGLAISSGIVNDLGGRLTARNASGGGAVFEVQLP 576 >gi|119478375|ref|ZP_01618383.1| Multi-sensor Signal Transduction Histidine Kinase [marine gamma proteobacterium HTCC2143] gi|119448584|gb|EAW29830.1| Multi-sensor Signal Transduction Histidine Kinase [marine gamma proteobacterium HTCC2143] Length = 987 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 22/230 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + S L ++ L + + H+I +PI AI + L E ++ + + Sbjct: 749 EDELIHSERLASIGRLAAGVAHEIGNPITAIACLAQNLRYDTDNPESLETGKEIIVQTGR 808 Query: 63 R--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + +D V T Sbjct: 809 VSKIVQTLVNFSHAGTENSHHEREPVHLKSCVDEAIHLLHLNKDAKIVSFDNHCPGTIYI 868 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ ++ +NL A + P +++ + ++ G+ QI Sbjct: 869 LGDTQRLLQVFVNLLSNARDASPALSSISVDSKALNERVSITVTDTGSGIENSH-QEQIF 927 Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIID---DHNVVLSALL 213 D + + + V + + + E DH + L Sbjct: 928 DPFFTTKEAGEGTGLGLALVYSIVDDLDGHISVESPVNGTDHGTRFTIRL 977 >gi|189425993|ref|YP_001953170.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422252|gb|ACD96650.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 415 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 71/231 (30%), Gaps = 18/231 (7%) Query: 1 MAKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + + L + LV L L + + H++ +P+ I +LL E E + Sbjct: 180 LQQRDLQRLEAMARHEQLVRLGELGAVLAHEVRTPLAGIKGFAQLLRERVQESREREYAG 239 Query: 55 LSSMSAIIR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + + G ++ + D V ++ + Sbjct: 240 KIVAESERLEGLVTDLLTYTRQETMQAGSAVVLELVQDAWDHLAEEALQAKVALQITGAV 299 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++LLNLF A ++P+GG + + + D + + +G E Sbjct: 300 SRPVACPADRLRQLLLNLFTNAQQAMPQGGDLRVDLSDDGEQATILISDSGPG-FAEESL 358 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + D + + +A + ++ LL Sbjct: 359 KRAFDPFYTTRASGSGLGLAVCHKIAAGYGGTVRLANARSGGGAEVTLLLP 409 >gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1297 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 60/238 (25%), Gaps = 25/238 (10%) Query: 2 AKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + + + + + H++ SP+ I +LL ++ Sbjct: 906 EQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQALEVIE 965 Query: 59 SAIIRLKFMRLA------------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + +VD + + V + +Q T Sbjct: 966 RNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAESKSIHIQTDLT 1025 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + +++ NL A P GG++ + ++ + ++ G Sbjct: 1026 ASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEIEVKLERVGSLAHIQVRDTGKGISLDF 1085 Query: 163 ---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 F + + + V L + + + + L Sbjct: 1086 LPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGSVQVTSPGEGLGTTFTVKLP 1143 >gi|325838906|ref|ZP_08166712.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] gi|325490647|gb|EGC92958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] Length = 623 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 63/220 (28%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 +++ H++ +P+ AI ++LL + ++ I + S+ + LK + ++ D Sbjct: 394 AKVSHELKTPLNAIKGYIQLLKLSIDNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIEDG 453 Query: 80 LIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLNLF 123 + L + V + + + +I++NL Sbjct: 454 KVKLEIDTIDLFQTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIINLM 513 Query: 124 MVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174 A +++ +K G + + + ++ Sbjct: 514 SNALKFTEHGKIEVSFDLDYQTETEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSISR 573 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L+ E + + L Sbjct: 574 QFGGTGLGLSISKRLAEVMGGNLIVESQVNVGSTFTLFLP 613 >gi|310818980|ref|YP_003951338.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392052|gb|ADO69511.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 513 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 64/226 (28%), Gaps = 17/226 (7%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSS 57 L + + +++ HD+ +PI A+ + + L E + + + L+ Sbjct: 273 QRERLEHLATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQV 332 Query: 58 MSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + T +D + D+ + +++ + + + + Sbjct: 333 ERLDRVVSTYQRLGRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGD 392 Query: 115 RAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + L + + + T + ++ G + + Sbjct: 393 HDLLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTR-ERAF 451 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + +V + + + + H +L L Sbjct: 452 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 497 >gi|307265850|ref|ZP_07547400.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919125|gb|EFN49349.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 457 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50 +AK L + + S H++ +PI I +++LD G ED+ + Sbjct: 219 LAKTFNGMLDRLEDSFKRQNMFVSDASHELRTPISVIKGYIDMLDRWGKEDKAVLQEAIE 278 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102 + L + L D+ + + + + V+ Sbjct: 279 AIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLNESKNIVVKG 338 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +++ A G + I V ++ +K +G + Sbjct: 339 QNDINITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSKAYIKIKDDGIGIPQED 398 Query: 163 K---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + E+K + + + L Sbjct: 399 IPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVGKGSEFTITLP 455 >gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 776 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56 + + + + + +R+ H+I +P+ AI LL + V ++ + S Sbjct: 126 LERAKREAEDANEFKSSFMARMSHEIRTPLNAITGMAYLLKKTEISLTQSMYVDRITQAS 185 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104 + I + + G V+ I ++Q+I+D + + Sbjct: 186 NNMLSIINDILDFSKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRLSKDPLI 245 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160 + +ILLN+ A G ++ K FS++ G Sbjct: 246 PNWFFGDQKRIEQILLNILNNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDTGIGMTE 305 Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + V L ++ L Sbjct: 306 EQIKNLFMPFIQGDSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTFIIHL 363 >gi|295838625|ref|ZP_06825558.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces sp. SPB74] gi|295827101|gb|EFG65239.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces sp. SPB74] Length = 573 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55 + + + + + + + H++ +P+ AI E+L+E + M +L+ Sbjct: 294 LERRVADMSAREESSRRFVADMSHELRTPLTAITAVTEVLEEEIDTLDPMIEPAVRLVVS 353 Query: 56 SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++ + + D I V + Sbjct: 354 ETRRLNTLVENLMEVTRFDAGTARLVCDDVDIADQITACVDARAWLDAVELDAERGITAR 413 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166 R IL NL A V +SV+ + ++ +G P F + Sbjct: 414 VDPRRLDVILANLIGNALKHGG--SPVRVSVRVEGPSLVIRVRDHGPGIPEDVLPHVFDR 471 Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + AH + + D V + L + Sbjct: 472 FYKASASRPRSEGSGLGLSIAQANAHIHGGDITAANSPDGGAVFTLRLPR 521 >gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1191 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 33/244 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 A++I L A + + H+I +P+ + ELL + ++ E + + Sbjct: 523 ARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTLDAEQQEYL 582 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVD 97 + S+ L+ + ++ + + I + + + V Sbjct: 583 NIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAHDKGLEVV 642 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKI 153 V + ++L+N+ A RG V Q+ + ++ Sbjct: 643 WDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNGKPLLHLAVSD 702 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G + + + + L + E V Sbjct: 703 TGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTPGQGSV 762 Query: 209 LSAL 212 Sbjct: 763 FHFT 766 >gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] Length = 1353 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 826 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883 Query: 63 RLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107 L + Y + ++ L + D +A K++ + E Sbjct: 884 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKE 943 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ I+ NL A G +T+++++ N + + G K +I Sbjct: 944 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051 >gi|289580119|ref|YP_003478585.1| integral membrane sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] gi|289529672|gb|ADD04023.1| integral membrane sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] Length = 409 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 56/236 (23%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 + + + +S + + S + HD+ P+ I L+LL+E + + Sbjct: 159 LRRTVRQLEASNEQLDHFASTVSHDLQEPLRMISRYLQLLEERYGDELDEDATDFIDYAV 218 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + D + Sbjct: 219 DGADRMQAMVTGLLEYSKIDTQANGGQFERVDVEQTLQDVRTDLQVRIDESDAEITTESL 278 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARFPE 162 + + ++ NL A ++ E F+++ G Sbjct: 279 PQVYANPSQLRQLFQNLLSNAIEYSGDEPPRVHVSAAPSETGTEWEFTVRDEGIGIEPS- 337 Query: 163 KFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + I + + L E V S L Sbjct: 338 AQDRIFELFQRLHALDDHSGSGIGLALCQRIVEHHGGELWVESEPGVGSVFSFTLP 393 >gi|220934204|ref|YP_002513103.1| two-component sensor CbrA [Thioalkalivibrio sp. HL-EbGR7] gi|219995514|gb|ACL72116.1| two-component sensor CbrA [Thioalkalivibrio sp. HL-EbGR7] Length = 986 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 63/219 (28%), Gaps = 18/219 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L ++ L + + H+I +P+ I + + L E E + ++ Sbjct: 758 RLASIGRLAAGVAHEIGNPLTGIASLAQNLHYEPDESERELSAQQILEQTRRINNIVQSL 817 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------K 117 ++ + + + + VQ+S T + Sbjct: 818 ITFSHTGEVPSTAMGAVDIKICVDEAMQLVQLSDTARAHLFENRLPPGITVRGSHQKLLQ 877 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI- 176 + +NL A + G ++ I + + ++ G ++ + + Sbjct: 878 VFVNLINNAMQASGPGDRIRIQGEATAGFAEILVEDEGTGIPET-LLDRVFEPFFTTKPP 936 Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + + + L Sbjct: 937 GEGTGLGLSVVYSIIQDHGGAVYVDNLPQGGACFTLRLP 975 >gi|253698673|ref|YP_003019862.1| histidine kinase [Geobacter sp. M21] gi|251773523|gb|ACT16104.1| histidine kinase [Geobacter sp. M21] Length = 290 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 65/241 (26%), Gaps = 32/241 (13%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54 L L + + I HD+ + + I +LELL + D + R Sbjct: 48 EKQLLQVQKLAGVGVMAGSIAHDLNNLLMGISGNLELLRQAIEPEAASQKYMDHALDASR 107 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111 ++ + L F R SVD + + +++ + + E + Sbjct: 108 RAANLSRQMLAFSRKGGQEVKSVDLNRLVAENLDLMKGSMRKGISLSARLEPELPPIEAE 167 Query: 112 SRERAKILLNLFMVAHASL------------------PRGGKVTISVQDSKNENIFSLKI 153 + ++++NL A +L S + Sbjct: 168 PGQMQQLIVNLITNAAEALGETGAIDVSTGFADLPAAEFTWSRVEPKPASGRFVFIEVSD 227 Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +G E ++ + + V + + +L + + L Sbjct: 228 SGCGM-DGETSDRMFHPFFSTKAAGRGLGLAAVRWMVKASGGAILVDTAPGEGTTIKVFL 286 Query: 214 E 214 Sbjct: 287 P 287 >gi|182414650|ref|YP_001819716.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841864|gb|ACB76116.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 964 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 66/239 (27%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A++ + + + + H++ +P+ + L+LL + + ++ SA Sbjct: 433 LARDAAERATKAK--SDFLAVMSHELRTPLAGVIGVLDLLRNNPPAHLLREYTAVARDSA 490 Query: 61 IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L+ + + + + ++ + ++ + S Sbjct: 491 ESLLRILDDILDTAKIEAGKLRIEAVPFRPREVFKNVCEAARLRAEAKKLEFKHIFSANM 550 Query: 107 EKI--DLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARF 160 ++ +++ NL A G V+ + +++ G Sbjct: 551 PEVLVGDPVRLRQVVDNLQNNALKFTESGSITVTLTCPEVRKESVVFLIAVRDTGCGIDQ 610 Query: 161 P---EKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V LA + E + ++ Sbjct: 611 ATQLRLFEKFEQADVSTTRRYGGTGLGLSIVKALAESMNGSVSVESEPGRGATFTFVVP 669 >gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 671 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 L+S + L + H++ +P+ A L + + +++I Sbjct: 420 RAETALRLASEAKDSFLAAA-SHELRTPLAAAKGHAHLALLKLGGETEAGPGKSLKIINR 478 Query: 56 SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTG 106 ++ + D + + + + V+ S Sbjct: 479 QIDRMAKLVEDLLDISRLQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHVEASDQL 538 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE--- 162 E ++L NL A P GG V + VQ + S+ G + Sbjct: 539 EGTWDRGRLDQVLTNLLSNALRYSPEGGPVWVRVQGEHDEGVHLSVTDTGVGIPKEKQGL 598 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLEK 215 F + S + + ++ R+ E + L + Sbjct: 599 IFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVESPGVAGEGSTFHVWLPR 652 >gi|94264253|ref|ZP_01288047.1| PAS [delta proteobacterium MLMS-1] gi|93455298|gb|EAT05505.1| PAS [delta proteobacterium MLMS-1] Length = 799 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 67/240 (27%), Gaps = 26/240 (10%) Query: 2 AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 S +L + HD+ P+ I++ ++LL + + + Sbjct: 555 RAEEELRKRSAELARSNAELEQFAYVVSHDLRQPLRRINSYMQLLKRAPNDQLDDESREM 614 Query: 56 S-------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQV 102 + + + + ++ + + V + Sbjct: 615 MGLAAGGVQRMDQMLVSLLEYSRVGRKGEPMAPLASREVVDEALDFLVPEINETNATVHI 674 Query: 103 SWTGEKIDLSRE-RAKILLNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLA- 158 S +I SR+ ++ NL A L R +V I+V + FS+ NG Sbjct: 675 SGDWPEIVASRDEFTRLWQNLIGNALKYCGLDRVPEVEIAVTPGDGDWRFSVADNGIGID 734 Query: 159 -RFPEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 + ++ ++ + I + + R+ E L + Sbjct: 735 PQQFDRLFKVFQRLHTRDQYEGTGIGLAVARKIVERHGGRIWVESQGAGMGCRFIFTLPR 794 >gi|83647884|ref|YP_436319.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635927|gb|ABC31894.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 540 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 64/233 (27%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS---------LELLDEVGIEDEVMQL 52 ++ ++S + ++ + + I H++ P+ AI N E LD+ +++ + ++ Sbjct: 292 QRSQLAHISRLSMMGEMAAGIAHEVNQPLTAIVNYIRVANRIAKAEQLDKALMDETLKKI 351 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108 ++ + + L + ++E K + Sbjct: 352 ESQCLRASQVIQHIRDFVKKPLQGKEILSANTLAKDILELAEIEAKEHGIELRANIEPLL 411 Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161 + ++ LNL ++ Q + +F + G Sbjct: 412 PELYIEPVQVQQVALNLLRNGMEAMGHANMRGSVKFKVAQANGKGILFEVTDEGPGV-AE 470 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + I + H + + + L Sbjct: 471 EHQNNLFSPFFTTKKSGMGIGLTLCQSIIHSHGGEIGFRPGESGGSTFYFTLP 523 >gi|189345724|ref|YP_001942253.1| histidine kinase [Chlorobium limicola DSM 245] gi|189339871|gb|ACD89274.1| histidine kinase [Chlorobium limicola DSM 245] Length = 231 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLA--- 70 S + H++ +P+ +I L E + +I S ++ + + Sbjct: 7 STVSHELRTPLFSILGFTGTLLREQDELERETRMEFISIIHDESKRLSALIEDVLMISKI 66 Query: 71 ------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 + + S+ + + +++ + ++ ++ +N Sbjct: 67 DSGRVSYKKSELDPSITVSEVCRSLKIRADEKNIDLRLRVCAPMEHIFADQDSLKQVAIN 126 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST----ID 177 + A P GG V +S+ FS++ NG E +D Sbjct: 127 IIGNALKFTPPGGVVQVSLFCEAQTMCFSVEDNGPGIPAEEAEKIFEKFFRVERPGEAVD 186 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + + + + V L Sbjct: 187 GTGLGLSIVKEIVAAHDGTVEVKSVPNQSTVFMVRLP 223 >gi|302341505|ref|YP_003806034.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638118|gb|ADK83440.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 568 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 26/234 (11%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLSS--- 57 L + L A+ L + I H+I +P+ + LE L E Sbjct: 326 ERMLEAGRLAAVGELAAGIAHEINNPVAIMVEEAGWLEDLLEEDDVVSNADRAEFERALA 385 Query: 58 ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT- 105 + T I + ++ Q + + + ++Q Sbjct: 386 QIKTQGARCKGITHKLLSFARKTDPEAREISVNEMIQEALSLLAQKSRYANVKIQARLQP 445 Query: 106 --GEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E ++L+NL A ++ GG VT+S + ++ + + G E Sbjct: 446 GLPSVKASPSELQQVLVNLVNNAVDAIGAAGGAVTVSSERVGDKIVLKVADTGKGIPEAE 505 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + H+ ++ E L Sbjct: 506 LS-RIFDPFFTTKPVGQGTGLGLSICYGIIHKLGGQISVESQLGQGTTFVITLP 558 >gi|302036482|ref|YP_003796804.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604546|emb|CBK40878.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 645 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 16/225 (7%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58 + L ++ L + + HD+ +P+G I +S ++ L+ E ++ R Sbjct: 416 RSQQHELIRQEKLASVGQLLAALAHDLRNPLGVIRSSAQVVLEGPQEEPIRQEMARYIID 475 Query: 59 SAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + Y + + Q R++ + Sbjct: 476 EVDKLSLRLHDFLRYARQKPPDLKAEPAEAVVRAALRQWEAQGGHERIRIEQQFGNALPS 535 Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ L A ++P GG +T + N+ + G+ PE ++ Sbjct: 536 IQVDPEQVKEALMNLLINAREAMPEGGTLTLTTRAGPGNKVEIEVADTGSGI-APEHLSR 594 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 I + + + V L +N L S Sbjct: 595 IFEPFFTTKAYGTGLGLTNVKRLVEDNGGTLAVTSSQGMGTTFSL 639 >gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 916 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 52/240 (21%), Gaps = 28/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK S + + + H+I +P+ I ELL + + + + S Sbjct: 257 LAKESAEAASKAK--SEFLATMSHEIRTPMNGILGMTELLLQTQLNRDQQRFAETVQSSG 314 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVS 103 + D + + D + + + + Sbjct: 315 RHLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPN 374 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLAR 159 S +I NL A +G V + ++ G Sbjct: 375 RAFMVRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNLRICVEDTGIGIP 434 Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G+ + L + + LE Sbjct: 435 PEYHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINLE 494 >gi|256422621|ref|YP_003123274.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037529|gb|ACU61073.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] Length = 566 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 54/216 (25%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFM--------- 67 + I H++ +PI +I S +LL + + E +L++ + A LK Sbjct: 346 ATISHELKTPIASIKMSAQLLTDTRVGAVNREQEELVKSIADDANRLLKITSELLNISQV 405 Query: 68 ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + +I V + +++ + + K L Sbjct: 406 ETGHIQLKIEPVFPDIIIDNATNTVSALAQQKNIAIRIHNNTHAHKIMTDPEKTAWVLTN 465 Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID---S 178 A P G++ ++ N FS+ +G Sbjct: 466 FLTNAVKYSPEDGEIDLTTSIRNNSVEFSVADHGRGIEEKYLSRIFDRYFKVPGTPEKVG 525 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L Sbjct: 526 TGLGLSISREFIEAQGGTIWVDSTLGEGSTFGFTLP 561 >gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] Length = 591 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 68/237 (28%), Gaps = 27/237 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58 M + + + + H++ +P+ + E + + ++ + + +++ Sbjct: 355 MTEERRL----EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYD 410 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG 106 ++ + G VD + I + + ++ V + Sbjct: 411 ESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQS 470 Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++L NL A GG VT+ + + F ++ +G + Sbjct: 471 PIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDI 530 Query: 164 ---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + T + + + ++ + S L Sbjct: 531 PFLFDRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTFSVYLP 587 >gi|187929099|ref|YP_001899586.1| multi-sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gi|187725989|gb|ACD27154.1| multi-sensor signal transduction histidine kinase [Ralstonia pickettii 12J] Length = 442 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM------ 67 + + H++ +P+ + LE + + + + ++ +M ++ + Sbjct: 210 FVANVSHELKTPLTVLSGFLETVRDIPLPEEDKRRYLDMMHTQAMRMQHLVEDLLALATL 269 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + ++ + + E NL Sbjct: 270 EGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRHTVSMTCDPAVSVCGAELELLSAFSNLA 329 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG + + ++S+ G PE ++ + Sbjct: 330 SNAVRYTPDGGTIRLDWGVRDGHAVYSVTDTGIGI-APEHIPRLTERFYRVDRSRSRDTG 388 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L A+ Sbjct: 389 GTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425 >gi|94264410|ref|ZP_01288200.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455167|gb|EAT05385.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 478 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50 + + L LVAL + + + H++ +P+ +I LL + ++ Sbjct: 248 RREMEKELQKNQQLVALGKMAAGVAHEVRNPLSSIKGLATLLGGRFAADDRDHDTARLLI 307 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106 + + S L + R ++D L D +++E + + + Sbjct: 308 NEVERLNRSIGELLDYARPLPLDRRAIDLNELLRDSLKLVESDASRQGVKLEFTPAAGQP 367 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 I ++LLNL++ A ++P GG + ++ + +G PE Sbjct: 368 RPILDRDRLLQVLLNLYLNALQAMPAGGTLRLTATVQGGLVRLWVGDDGQGI-APEHLKV 426 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214 + D + + + V + +E+ RL + L Sbjct: 427 VTDPYFTTKPEGSGLGLAMVQKIINEHGGRLWLTS-PGKQRGTTVEIELP 475 >gi|87200289|ref|YP_497546.1| histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87135970|gb|ABD26712.1| histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 394 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSSMSAIIRLKFM 67 + H++ +P+ +I +E L + V++ R + Sbjct: 169 FVANASHELRTPLASIIGYIETLADPDAKVDEATAARFHATVLREARRLQSLVEDLMSLS 228 Query: 68 RL----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 R+ +D +G I + + + ++ +++ NL Sbjct: 229 RIEAEKHELPRDRIDLGQLVGSIASETAMTVGDGRLEVETCPALVAGDRQQLDQLVRNLI 288 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDS 178 A V + V NE S+ G + Sbjct: 289 DNAFKYGDTAAPVAVKVAIHGNEAELSVTDRGEGIHPDHLPYLTRRFYRTDPGRSRAAGG 348 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ +L ++ L Sbjct: 349 TGLGLAIVKHIVERHRGKLDIASQLGIGTTVTVRLP 384 >gi|91782579|ref|YP_557785.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia xenovorans LB400] gi|91686533|gb|ABE29733.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia xenovorans LB400] Length = 944 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ N+ S L L S I HD+ +P+ I +L + +L+ A+ Sbjct: 668 ARDALVNMESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNAELVEAIHEEAL 727 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDL 111 + + L + + + VQV + L Sbjct: 728 RMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLL 787 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLA---RFP 161 + ++ NLF A +TI Q ++ NG Sbjct: 788 HLDAVLMERLFSNLFENAAKYTAPATPLTIGAQRLDTDGKSFVRVTVDDNGPGLPAGMEA 847 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-----HNVVLSALLE 214 F + G ES + + + + L Sbjct: 848 RVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIGALNRVSANGHVEGARFWFTLP 905 >gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855] gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855] Length = 1111 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 56/245 (22%), Gaps = 34/245 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----------- 50 AK L+ M L + + H+I +P+ +I E++ + Sbjct: 861 AKEEAERLNRMKSAFL--ANMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTAL 918 Query: 51 -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101 Q L S L+ + + + L + D +A + Sbjct: 919 DQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLNLADEVAEATDLFEPQALTEG 978 Query: 102 -------VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 L NL A GG V + ++ ++ Sbjct: 979 IDLQGETAEGPLWARVDEGGLRIALQNLISNALKYTEEGGTVRVRAGRRGDDVALEVEDT 1038 Query: 155 GNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + T + + + + E Sbjct: 1039 GVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGEGSCF 1098 Query: 210 SALLE 214 + + Sbjct: 1099 TVRVP 1103 >gi|317123601|ref|YP_004097713.1| PAS/PAC sensor hybrid histidine kinase [Intrasporangium calvum DSM 43043] gi|315587689|gb|ADU46986.1| PAS/PAC sensor hybrid histidine kinase [Intrasporangium calvum DSM 43043] Length = 1090 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 59/236 (25%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMS 59 + L +D + + + H++ +P+ I E L + G+ E + + L + Sbjct: 321 ERQRAETLEVLDAAKSSFFTNVSHELRTPLTLIAGPVAEALGDPGLTPEQRERLDLVQRN 380 Query: 60 AIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + +D + + V Sbjct: 381 TVRLTRMVDAMLDFGRMAANKLQPLPEPLDVALQTRTMADSFTQAFDRAGLDFVVDCDHA 440 Query: 109 IDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---- 160 + +++LNL A P G + S+ G R Sbjct: 441 PRTAHLDRDMYERVVLNLLSNALKYTPAGSVRLRLECSADGFA-VSVADTGIGIRRRDLA 499 Query: 161 --PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+F Q+ I V L + E + L Sbjct: 500 RIFERFEQLPRRGRARFQGGAGIGLAMVKQLTELMGGSVDVESTLGRGSTFTIRLP 555 >gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] Length = 1000 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 55/236 (23%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K + ++ + + H++ +P+ AI E L++ + Q + + + Sbjct: 613 LEKELATASATAK--GDFLANMSHELRTPLTAIIGYSESLNDQSLSATDEQQAVDTIIRS 670 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------------VQVS 103 L + V++ I + + + D Sbjct: 671 SHHLLNIINDILDFSKVEASIVEVENVPLNPYLLLKDVYSYFTQKARSQNLAFEVVYHFP 730 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPE 162 +ILLNL A G D + + + G + Sbjct: 731 LPNRIHADPTRLKQILLNLCSNALKFTKEGSVTIDVGWDEERKLTRFSVIDTGAGLSEEQ 790 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + LA + + + + Sbjct: 791 IGKLFQSYAQAEASTARQFGGTGLGLVISKQLAEKMGGTIEVTSEPGKGSCFTVYI 846 >gi|294643685|ref|ZP_06721486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294806835|ref|ZP_06765661.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292640987|gb|EFF59204.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294446005|gb|EFG14646.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 802 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 19/232 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ N + L + + HD+ +P+ AI EL+ + S+ Sbjct: 315 LEQSDKRNRELLRSRKELMASVAHDLRTPLAAIRGCAELMPSENDVSRRTDYLDNILHSS 374 Query: 61 IIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WT 105 L + Y V S + ++E + E+ + + Sbjct: 375 DYMLGLVNTLMEYHQLDESGVRSNNTVFNLEALFEEIADSHRLAALQKDLAFTASFSGLD 434 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162 S +I NL A G + N ++ G E Sbjct: 435 AIVCCDSSHIRQIAGNLLSNALKFTFHGEVRLEAEYRPGN-LRIVVRDTGVGINAKERER 493 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I + + L E + R+ E + S L Sbjct: 494 IFGAFERLDSARNIPGFGLGLAITVRLVSEMQGRVEVESVPSEGSRFSVFLP 545 >gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1447 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 31/244 (12%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50 K I NL +A + + + H++ +P+ +I ++L E + + + Sbjct: 1192 EKKISENLLHEKQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGELNRKQL 1251 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDK 98 + I S S L + + + + L E + + Sbjct: 1252 RAIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVADKKNI 1311 Query: 99 RVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 +++ E + + +I+ NL A V I + + N ++ G Sbjct: 1312 DIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGARKNGNLVEITVTDAG 1371 Query: 156 NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + ++ + V + + + + + Sbjct: 1372 IGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGEGSTFA 1431 Query: 211 ALLE 214 + Sbjct: 1432 FAIP 1435 >gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 682 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 62/233 (26%), Gaps = 27/233 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62 + L L H++ +P+ I +LL + +++ + Sbjct: 357 EEANRIKDEFLATL-----SHELRTPLNPIIGFTQLLRKGQLDEASAARALETIERNARA 411 Query: 63 --------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107 +RL + D + ++ R ++ Sbjct: 412 QSRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFAAQSKNIELRARLDPNVVL 471 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-- 165 S +++ NL A P G + + ++ + E + +++ +G Sbjct: 472 PFGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLERGRAEAVLTVRDSGVGIAGDFLPHVF 531 Query: 166 ---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + + + + V L + + E D + L Sbjct: 532 ERFRQANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVESPGSDQGATFTVRLP 584 >gi|117925682|ref|YP_866299.1| response regulator receiver sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609438|gb|ABK44893.1| response regulator receiver sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 518 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVG 44 + K + L + + H+I +P+ AI ELL G Sbjct: 132 LQKERAEAANQAKNAFL--AMVSHEIRTPMNAIMGMNELLTLTQLTDKQQEYVATQKRAG 189 Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + ++ L + LA Y V +++ Q I + Q Sbjct: 190 EDLLILLDDVLDVCDMERGAFTLTLAPFYLADVVAVVQAVVGAQASAKGIGFNITCQSGL 249 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + ++LLNL G V++ ++ F ++ G + Sbjct: 250 AEQLVGDRHRITQVLLNLCGNGVKFT-HEGSVSMLLETHPKGVCFVVRDTGIGIGAGD-Q 307 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + L L + + ++ Sbjct: 308 ARIFDAFSQSDVSLTRRYGGLGLGLHITRQLVELMHGTLRLQSQQGQGTTFTVVIP 363 >gi|324327910|gb|ADY23170.1| sporulation kinase B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586] gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586] Length = 830 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 60/240 (25%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 ++ + + A +++ H++ +P+ + +LL + DE + + + Sbjct: 439 KQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLTDEQREHVAVLCS 498 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108 S L + ++ + E + + + R+ +K Sbjct: 499 SGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLNELVYAIDRIYRPLCNDKGLELVVDSNI 558 Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159 +IL NL A +G + + + + + G R Sbjct: 559 TSAVLVRSDQVRINQILFNLLNNAIKFTHQGSIRVVLELIEGDPLAQLVIQVVDTGIGIR 618 Query: 160 FPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L +L L Sbjct: 619 EQDLTVIFEPFVQAESTTTREYGGSGLGLAIVHSLVEMLSGQLHVSSEYGRGTRFEIQLP 678 >gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] Length = 1105 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 69/243 (28%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEV 49 L + +L + + + H++ +P+ +I ++L + E Sbjct: 519 RTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKDMEK 578 Query: 50 MQLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +++I + + + M L S + + L + + + Sbjct: 579 IEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISF 638 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGN 156 V+ S + + ++IL N A G +D +N+ IFS+ G Sbjct: 639 FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSVTDTGI 698 Query: 157 LARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + VDG + + LA K + Sbjct: 699 GIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFL 758 Query: 212 LLE 214 L Sbjct: 759 KLP 761 >gi|254476816|ref|ZP_05090202.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] gi|214031059|gb|EEB71894.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] Length = 778 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 52/225 (23%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------L 64 A L + H+I +P+ + ELL + + +E S Sbjct: 218 AFLA-NMSHEIRTPMNGVVGMAELLSDTNLSEEQRLYANTIKNSGEALLVIINDVLDYSK 276 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKIL 119 + + D + ++ +++ + + ++L Sbjct: 277 IEAQKLILHPEPFDLERSVHEVLMLLQPTAREKGLNLILDYDLFLPTSFVGDPGRIRQVL 336 Query: 120 LNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG---- 170 NL A G S +D +++ G + + Sbjct: 337 TNLVGNAVKFTTEGHVNLQITGISSPEDEFCSIHVAIEDTGIGIPAEKVQHIFGEFNQVD 396 Query: 171 -NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E ++ Sbjct: 397 DEQNRKFEGTGLGLAITKRLIELMGGEIWVESEVGKGSCFGFRIK 441 >gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 1160 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 69/243 (28%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEV 49 L + +L + + + H++ +P+ +I ++L + E Sbjct: 519 RTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKDMEK 578 Query: 50 MQLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +++I + + + M L S + + L + + + Sbjct: 579 IEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISF 638 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGN 156 V+ S + + ++IL N A G +D +N+ IFS+ G Sbjct: 639 FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSVTDTGI 698 Query: 157 LARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + VDG + + LA K + Sbjct: 699 GIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFL 758 Query: 212 LLE 214 L Sbjct: 759 KLP 761 >gi|186686383|ref|YP_001869579.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468835|gb|ACC84636.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 762 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 71/241 (29%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 + F ++ + L S I HD+ + + I +LL D +++++ +++ Sbjct: 381 EAQLFRAQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTHHLLEILEINA 440 Query: 58 MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKID 110 +K + ++ + ++ +++++ ++ Sbjct: 441 RRGADLVKQVLSFARGVEGKRITLQLRHLIVEVAKILKETFPRSIQISTDVLQDLWMVSG 500 Query: 111 LSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155 S + ++L+NL + A ++P GG ++ G Sbjct: 501 DSTQLHQVLMNLCVNARDAMPNGGSLIISAENLLIDENYARMNLEAKEGPYIAITVSDTG 560 Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + + + V+ + + + L Sbjct: 561 VGI-SKEILDRIFEPFFTTKDVGKGTGLGLSTVLGIIKSHGGFVNVYSELGSGTSFKVYL 619 Query: 214 E 214 Sbjct: 620 P 620 >gi|119953538|ref|YP_945748.1| sensor protein HydH [Borrelia turicatae 91E135] gi|119862309|gb|AAX18077.1| sensor protein HydH [Borrelia turicatae 91E135] Length = 386 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIR 54 + L A I H+I +P+GAI +L+LL + + + Sbjct: 138 KHKEELFRRAEALAAFTRHARNIAHEIKNPLGAIDINLQLLKKEIDRQSIKSTKANNYFK 197 Query: 55 LSSMSAIIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + K + + D + + ++ + + + + Sbjct: 198 IIKEEINRMDKTVTDFLLTVRPIKIVPEKRNITDVIKSVYNLLNPELNNKDIKFLLNLKK 257 Query: 105 TGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++++N+ A +L + K+ IS+ ++ + +K NG+ Sbjct: 258 VSPALIDEKLIRQVIINIVKNAEEALLESNKKTKKIEISIHENTEKIYIGIKDNGHGI-K 316 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E I + I + E+ + E + + L K Sbjct: 317 NETKDDIFKPQFSTKESGSGIGLTISYKIIKEHGGEIFVESKETKGTSFTITLPK 371 >gi|115377551|ref|ZP_01464750.1| sensory box histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310821655|ref|YP_003954013.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365438|gb|EAU64474.1| sensory box histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309394727|gb|ADO72186.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 724 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 73/252 (28%), Gaps = 41/252 (16%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50 + N+ + L A+ L + I H+I +PI + +L+LL + + E Sbjct: 473 RRMEQQNIQNDRLAAMGVLTAGIAHEINNPISYMLANLDLLRQWEDDLEQQLPALPGLPP 532 Query: 51 -------------------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE 91 L + + L + VD L + + + Sbjct: 533 ELLERLPEARSVIADCIEGSLRIGDIVRGMRLLSHTGQGDVLS-PVDIHRSLDAVLHIAQ 591 Query: 92 DFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDS----K 144 + R++ + + ++ LNL + A ++ G + + Sbjct: 592 GELKHTARLKQDYARNLPMVLGSEGRLGQVFLNLIINAVHAMRPGSPADHVLHIRSRLDE 651 Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEII 202 + + G+ PE +I D + + + + + E Sbjct: 652 GQVRIDISDTGHGI-PPEVLPRIFDPFFTTKPAGIGTGLGLSISYAIIQKMGGSMRVESR 710 Query: 203 DDHNVVLSALLE 214 H S LL Sbjct: 711 VGHGTTFSLLLP 722 >gi|15896910|ref|NP_350259.1| sensor protein KdpD [Clostridium acetobutylicum ATCC 824] gi|18273032|sp|P94608|KDPD_CLOAB RecName: Full=Sensor protein kdpD gi|15026781|gb|AAK81599.1|AE007863_2 Sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) [Clostridium acetobutylicum ATCC 824] gi|325511086|gb|ADZ22722.1| Sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) [Clostridium acetobutylicum EA 2018] Length = 900 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 77/235 (32%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + L + L I HD+ SP+ I + EL+DE ++ + + Sbjct: 664 QEKSKVEIERERLRSNLLRSISHDLRSPLAGIKGAASTILENGELIDEKRKQELINGIYE 723 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEK 108 + + + + G+ + +E+V+ + + +++VS + Sbjct: 724 DTEWLIRLIENLLSMTKFDEGNTKIKKDVELVEEVVSEAVQRSSKYFKNHKIKVSVPEDV 783 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I +S + ++++NL A P+G + I V + K + +F + G Sbjct: 784 IMVSMDGSLIEQVIINLLDNASKFSPKGSTIEIKVYEKKKDVVFEIIDEGQGISEDILPN 843 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + ++ + + K Sbjct: 844 IFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHGGKIEAVNKGSGGAIFKFNIPK 898 >gi|332527231|ref|ZP_08403299.1| osmosensitive K+ channel signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332111651|gb|EGJ11632.1| osmosensitive K+ channel signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 467 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 65/234 (27%), Gaps = 20/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + S L L S I HD+ +P+ A+ + L L+ SA Sbjct: 215 AQQSALQIESERLRNSLLSAISHDLRTPLAALVGLADTLAIAPPGPAPRGLVDAIRESAR 274 Query: 62 IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTGEK 108 + +A G+V +E+V+ +A + V Sbjct: 275 RMAALVGNLLDMARLQAGAVRLRRAWQPLEEVVGSALAACQPVLQGRPVTVALADGLPLL 334 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFT 165 + ++L+NL A P G + I + + G F Sbjct: 335 SLDAVLFERVLVNLLENAARYTPPGSTLVIRAEALDQTVRLVVDDQGPGLPPGREEALFE 394 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + G ES + + + + + + L + Sbjct: 395 KFERGERESATPGVGLGLAISRAIVQAHGGTIRGANRLEAGRVAGARFTIELPR 448 >gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] Length = 836 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 27/238 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------------GI 45 MAK + + + + H++ +P+ AI+ E++ I Sbjct: 585 MAKIRAEAANHAK--SEFLANMSHELRTPLNAINGFSEIMATEMFGPLGHARYKEYAGDI 642 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 L+ L + + V + D +++ Sbjct: 643 LGSGQHLLSLINDILDMSKIEAGKMTLRIEPVSLDEVIEDTLRLVRQRAEKAGLKIRVHM 702 Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++ + +ILLNL A P+ G VTIS + N ++ G + Sbjct: 703 PQLPEIEADFRALKQILLNLLTNAIKFTPQHGTVTISAAMTDNNVHIAVADTGIGIAAKD 762 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ T + + L + RL + + ++ +L Sbjct: 763 -MERLARPFEQIENQFSKTKEGTGLGLALTKSLIEMHSGRLEIDSTEGQGTTVNVILP 819 >gi|312958366|ref|ZP_07772887.1| periplasmic sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] gi|311287430|gb|EFQ65990.1| periplasmic sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] Length = 437 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 9/220 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA+++ +L + + + HD+ +P+ + SLEL+D + M + Sbjct: 211 MAEDVEQAGREREL---MLAGVSHDLRTPLTRLRLSLELMDNHTDLTDDMVRDIEDMDAI 267 Query: 61 IIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + + L + + R+++ ++L Sbjct: 268 LDQFLAFIRDGRDEVVEEVDLTDLVREVVAPYNQSSEQVRMRLEPIQPFALRRISMKRLL 327 Query: 120 LNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174 NL A +S ++ + S+ G E F G+ Sbjct: 328 NNLIGNALHHAGSDVEVAAYVSGDNAAPYVVLSVMDRGAGIDPAELEGIFNPFTRGDRAR 387 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + + + + L Sbjct: 388 GGKGTGLGLAIVRRIASMHGGNVELRNREGGGLEARVRLP 427 >gi|268317981|ref|YP_003291700.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262335515|gb|ACY49312.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 662 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 60/233 (25%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ ++ + + L + + H++ +P+ + +++ E + Sbjct: 422 AREEAEAMNRLK--STLLTNLSHELRTPLTTVIGFADVIREEAAPGTLFHEFAQLIADGG 479 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL-- 119 RL + +++ E+++ E+ L + Sbjct: 480 RRLLHLMEEVMDLAQLEAQTLKAGRERLLLPERLRPLMATYRARAEQKGLKFRVQQAPGV 539 Query: 120 -------------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +L A RGG VT+ + +++ ++ G Sbjct: 540 AVWADPELLERAVEHLLDNAIKFTERGG-VTVRFRQVEDQVGIVVEDTGIGIPEAALPHV 598 Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T + + R+ E + L Sbjct: 599 FDEFWQASSGIGRTHEGLGLGLAVARRFVEIMGGRIEVESTPGRGSRFTIWLP 651 >gi|238917774|ref|YP_002931291.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Eubacterium eligens ATCC 27750] gi|238873134|gb|ACR72844.1| two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [Eubacterium eligens ATCC 27750] Length = 475 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 24/235 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MA + S S I HD SP+ +I LE + + I E++ + Sbjct: 241 MASQLN---ESDKFQQKFLSNISHDFRSPLTSIKGYLEAIQDGTIPPEMLDKYIGIMLFE 297 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------- 113 RL + +D DI + I T +K + Sbjct: 298 TERLTKLTSNILTLNELDPKSVCLDISVFDLNSIIRHTVETFEGTCKKKGIKFNITYANS 357 Query: 114 ---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 +++ NL A G + I+V++ + S+K G + Sbjct: 358 IQNVKADKGRIQQVIYNLIDNAIKFSKDGSYIYITVKEKGEKAQISIKDTGCGISKEDID 417 Query: 164 --FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + D + + + + LE Sbjct: 418 KIWDRFYKSDSSRGRDKKGSGLGLSITKEVIQAHGENIDVVSTLGVGTEFIFTLE 472 >gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 890 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53 + + L +D L + + + H++ +P+ AI +LL + + ++ + Sbjct: 286 LLQKANKQLKELDTLKSAFIANMSHELRTPMNAIIGYTDLLLDEVDGPLNDDQKTSLKKV 345 Query: 54 RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--- 102 ++ + + + +D + I E IA Sbjct: 346 AANARHLLQLINDVLDISKIESGKIELHPREIDLKELIDGIMVTFEPLIAKKGLSFTLNI 405 Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKI 153 S + + +IL+NL A +GG + S+ Sbjct: 406 ESGAEKLYVDEDKTKQILINLISNAVKFTHQGGITIKAKVSERGKAKDGSPQFIEISVSD 465 Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G + + + + V L +K + E Sbjct: 466 TGIGIKREDLDKIFDKFAQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWAESEVGKGST 525 Query: 209 LSALLE 214 LL Sbjct: 526 FYVLLP 531 >gi|167820093|ref|ZP_02451773.1| two-component sensor kinase protein [Burkholderia pseudomallei 91] Length = 709 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695 >gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199] gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199] Length = 666 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 79/236 (33%), Gaps = 22/236 (9%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51 + + ++++ + + + +++ +P+ AI E+L++ + E + Sbjct: 422 QRALQERTEALEMADRLKSEFLANVSYELRTPLNAIIGFSEILEQEYAGPMNDRQKEYAR 481 Query: 52 LIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 I SS + + ++ L + + + + + +D V Sbjct: 482 AILQSSNRLVRLVNDILDLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFSV 541 Query: 101 QVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 ++ T I + R + L NL A A P GG+V ++V+D + +F + G Sbjct: 542 RIDGTVAPIMVDERRLTQALYNLVSNAFAFTPDGGRVLVTVEDDDDMVLFRVADTGVGIA 601 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + V L + + H + + + Sbjct: 602 LEDQGRVFDRFERAGRDAGAGLGLALVKSLVELHHGTVELLSEPGHGTEVICRIPR 657 >gi|170724519|ref|YP_001758545.1| osmolarity sensor protein [Shewanella woodyi ATCC 51908] gi|169809866|gb|ACA84450.1| integral membrane sensor signal transduction histidine kinase [Shewanella woodyi ATCC 51908] Length = 436 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 8/213 (3%) Query: 8 NLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRL 64 ++ ++ ALL + I HD+ +P+ I + E++ ++ ++D ++ I + Sbjct: 224 SMKQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEEDEYLKDGIVHDIEDMDAIINQFI 283 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 ++R T + + L E V+++ + +IL NL Sbjct: 284 AYIRQDQESTREQEQINYLIQDVVQAESNREGKIEVELATCPDIPMQGIAIKRILSNLVE 343 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181 A K++ FS++ NG PE F G++ + Sbjct: 344 NAFRYGQGWVKLSSHFD--GKRVGFSVEDNGPGIPEDQIPELFQPFTQGDIARGSVGSGL 401 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ ++ + + L Sbjct: 402 GLAIIKRIVDRHQGEVILTNRAEGGLHAQVWLP 434 >gi|76819580|ref|YP_335541.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b] gi|254264074|ref|ZP_04954939.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a] gi|76584053|gb|ABA53527.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b] gi|254215076|gb|EET04461.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a] Length = 723 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|119716583|ref|YP_923548.1| PAS sensor protein [Nocardioides sp. JS614] gi|119537244|gb|ABL81861.1| PAS sensor protein [Nocardioides sp. JS614] Length = 668 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 56/222 (25%), Gaps = 19/222 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLSSMS 59 +L A + HD+ +P+ AI E++ + + M Sbjct: 444 RRAELAAF-AGVVAHDLRNPLAAIDGWTEMIADELDSGNLSADLARDFVSRVRSSSRRMR 502 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 +IR + L + + + RV+V + ++L Sbjct: 503 ELIRDLLAHATASQRDLEVERVDLAALVAEVATARHAESRVRVDPLPVVLADPVLVRQVL 562 Query: 120 LNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--- 173 NL A + V + + NG E ++ D Sbjct: 563 DNLIGNALKYVAAGVEPEIVVQGCRTDSRMVTVQVADNGIGIPAGE-HERVFDEFHRAHY 621 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + + V + + ++ + L Sbjct: 622 RDYEGSGLGLSIVRRIISRHDGTIVARANPSGQGSMFEFTLP 663 >gi|330954362|gb|EGH54622.1| sensor histidine kinase [Pseudomonas syringae Cit 7] Length = 933 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54 + S L ++ L + + H+I +PI I + L E I ++++ + Sbjct: 694 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 753 Query: 55 LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 S + F + + V + + Sbjct: 754 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVQFYNLCNPEHWAV 813 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + A++L+NL A + P G V + + S++ ++ G+ ++ + Sbjct: 814 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 872 Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215 + + + V + E+ ++ + D + L + Sbjct: 873 PFFTTKDPGEGTGLGLALVYSIVEEHYEQITIDSPADPEQQRGTRIRVTLPR 924 >gi|328952324|ref|YP_004369658.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452648|gb|AEB08477.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 946 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + ++ + L I HD + + I + L L E + +I + + Sbjct: 570 EEEQARADKLESLGFLAGGIAHDFNNILAVIRGNAGLALLSLPAGSRELNNLIVIEGACL 629 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113 A + + V L L ++ Q F V+ + + Sbjct: 630 KAQSLAQQLLTFAQGGVPVKKLSDLKELIQETFIFATRGSPVRCEFNLATDLWAAEIDAG 689 Query: 114 ERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKINGNLARFP 161 + +++ NL + A ++P G + ++ G Sbjct: 690 QISQVFHNLAINAVQAMPTGGAIRVQAENAVLQTSSGFSLPPGEYVKITVTDQGVGILPK 749 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + V + ++ + + V L Sbjct: 750 YL-AKVFDPYFTTKQVGSGLGLTTVFSIVKKHGGDISVQSTLGEGTVFVIHLP 801 >gi|320194695|gb|EFW69325.1| Aerobic respiration control sensor protein arcB [Escherichia coli WV_060327] Length = 778 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|313202675|ref|YP_004041332.1| integral membrane sensor signal transduction histidine kinase [Paludibacter propionicigenes WB4] gi|312441991|gb|ADQ78347.1| integral membrane sensor signal transduction histidine kinase [Paludibacter propionicigenes WB4] Length = 1204 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/234 (8%), Positives = 64/234 (27%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 + ++ S A + ++ H+I +P+ + +++ L + +D + Sbjct: 970 LEQSARLLAKSERESAWRSMARQVAHEINNPLTPMKLTIQQLQRTKKMQDKQFDDYFEKS 1029 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG---------DIEQVIEDFIAVDKRVQVS 103 + + + ++ + + Sbjct: 1030 SVMLIEQIDNLSRIAGTFSNFARMPEASFVRVDVAAKIYSVFRLFMNNNEHVTMHYEGAE 1089 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFP 161 + ++ NL A ++P + IS++ ++ E ++ NG Sbjct: 1090 QNVFVYADPEQLVQVFNNLIKNALQAIPEEREGEISIRLTEEAKEVTITVSDNGAGI-VA 1148 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 E ++ N + + + + + D + L K Sbjct: 1149 EIQDKLFIPNFTTKSTGMGLGLAIAKNIIEISGGSITFSTAIDEGTTFTVRLPK 1202 >gi|308272535|emb|CBX29139.1| hypothetical protein N47_J01200 [uncultured Desulfobacterium sp.] Length = 772 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 73/236 (30%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRL 55 + L + L +L L I HD + + AI ++ L + + L Sbjct: 394 KRTEEELLKAKKLESLGILAGGIAHDFNNILTAISGNISLAKMDVDSDSKIFDFLNAAEL 453 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---- 111 +S+ A + V + + I + F+ + + ++ + Sbjct: 454 ASVRAQALTMQLLTFAKGGTPVKEISSIASILKESSLFVLTGSKSKCEFSIAENLWSVEA 513 Query: 112 -SRERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLA 158 + ++++ N+ + A+ ++P GG + I + + ++K G Sbjct: 514 DPGQISRVINNIVINANQAMPEGGVIQIRAWNKEIEKEHGLPVKPGRYIMITIKDQGVGI 573 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + ++ + D + + L Sbjct: 574 AENNLS-KIFDPYFSTKQTGRGLGLASAYSIIKKHHGHISVNSSQDKGTIFTIYLP 628 >gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451] gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451] Length = 701 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 57/237 (24%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + +S + + + H+I +P+ + + ++L + + + Q + S Sbjct: 308 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTAKQRQHLTSLYESG 367 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 + + Y+ +G I+ + + Sbjct: 368 EHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHSDIID 427 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161 T +I+ NL A +G D + ++ +G Sbjct: 428 TRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIDDEYFLTIKVQDSGIGI-PQ 486 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + +I + V +A + + Sbjct: 487 DALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEVR 543 >gi|255008019|ref|ZP_05280145.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] gi|313145735|ref|ZP_07807928.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134502|gb|EFR51862.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 794 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 61/234 (26%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53 +AK + +L + + H+I +P+ AI +L + + ++ +I Sbjct: 550 LAKQMA---EKAELKQSFLNNMSHEIRTPLNAIVGFTNVLIGEGSEEIDPDEKASMLDII 606 Query: 54 RLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 ++ + + + + + + +I+ + + Sbjct: 607 NHNNELLLKLINDVLEISRLDSGSLDFEIKEWDMTEIMKEIYLTYQPLIQPSLQFHLELG 666 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF 160 +++ N A+ G + D ++ +K G Sbjct: 667 NPVPLLVHIDRFRFTQVISNFLNNANKFTQNGHIILGCKVDEEHHEVCIYVKDTGKGIDE 726 Query: 161 PEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E + + ++ R+ + +L Sbjct: 727 KELMMIFDRFYKTDEFEQGSGLGLAISKVIIERLSGRIEVHSEKGKGSCFAVIL 780 >gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 742 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 67/251 (26%), Gaps = 37/251 (14%) Query: 1 MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49 MA+ + ++ + + + H+I +P+ + L+LL+ E Sbjct: 352 MAQERQVAVDALRAAKDAAEDASRSKSEFLANMSHEIRTPLNGVLGMLQLLESGRPSAEQ 411 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGS----------------VDSLIGLGDIEQVIEDF 93 + + + S + + + V I E Sbjct: 412 REYVETAIRSTNRLTRLLSDILDLSRIESNKLVIQEESFAVADVRQSILDIFETPAREKG 471 Query: 94 IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENI 148 + ++ RV +IL NL A P+G V S + Sbjct: 472 VRLEVRVDPRIPAHLFGDEARLRQILFNLVGNAVKFTPKGQVAVNFVLVSAAGESTCQIR 531 Query: 149 FSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 F+++ +G G+ + + V L +L + Sbjct: 532 FTVQDSGVGIPSERLKDIFEPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQIQSTQ 591 Query: 204 DHNVVLSALLE 214 ++ L Sbjct: 592 GEGTLVGVTLP 602 >gi|170749079|ref|YP_001755339.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655601|gb|ACB24656.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 991 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 19/221 (8%), Positives = 50/221 (22%), Gaps = 22/221 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + + H++ +P+ A+ E++ E + L+ + L Sbjct: 497 SQFLANMSHELRTPLSAVIGYSEMVQEELEDIGEADLVTDMKKIETNARHLLGLINDVLD 556 Query: 76 SVDSLIGLGDIEQVIEDFI---------------AVDKRVQVSWTGEKIDLSRERAKILL 120 +I + + + + K+ Sbjct: 557 ISKIEADRVEIYAEDFEVAAVVQEVAVTVEGLVAKKGNTLALELEPNLGSAHTDVTKLRQ 616 Query: 121 NLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VE 173 L + + I+ V + F++ G + F + + Sbjct: 617 CLINLLSNAAKFTEDGRITLAVTRADGALRFAVTDTGIGMTQEQLGKLFERFTQADASTT 676 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + A + E D + L Sbjct: 677 RRFGGTGLGLAITRAFAEMLGGAIAVESRDGAGTTFTLTLP 717 >gi|148657294|ref|YP_001277499.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569404|gb|ABQ91549.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 572 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 58/235 (24%), Gaps = 27/235 (11%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 S V LL + HD+ +P+ A+ LELL + D LI + + Sbjct: 337 AMRQQSERNVTLLAQMVIHDLKNPLTALIGFLELLSTGELNDPQRALIESALRTGRNLAG 396 Query: 66 ------FMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEKIDLSR 113 + + K + + + Sbjct: 397 LVDDLLDLARYNEGRLRLRLSDVSLPDLCAECAIELSGWLAYESKTLILDVPQTLPTIRA 456 Query: 114 E---RAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++LLNL A P G D + + + G P++ Sbjct: 457 DSRLLRRVLLNLLSNALKHTPYGTTIMLRAWREPHPDGGEQTVIEVADTGPGI-PPDQIE 515 Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + S + + + + + L Sbjct: 516 RIFEPFVGAGESRPARQSSTGLGLAFCKMAVDAHGGTIEVSSFPGDGATFRIRLP 570 >gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1402 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%) Query: 2 AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 K + + + + + + H+I +P+ AI L LL + ++ Sbjct: 665 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 724 Query: 58 MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 SA L+ + ++ D +I +++ ++ + Sbjct: 725 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 784 Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156 + ++L+NL A +G + S +K + +FS++ G Sbjct: 785 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 844 Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208 EK + I + L L E + Sbjct: 845 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 903 Query: 209 LSALLEK 215 LEK Sbjct: 904 FVITLEK 910 >gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 676 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 73/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 + + ++ L + + I H++++P+ + L + ++ Sbjct: 432 LRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIH 491 Query: 58 MSAIIRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S L + + + IE ++E ++ +++ Sbjct: 492 DSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLIKVAENTIESLVEKALSEKVNLKLDLQ 551 Query: 106 GEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + +IL NL A P GG VT+ V ++ +IF ++ G Sbjct: 552 IDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRVWVEEDTSIFQVEDTGIGIPE 611 Query: 161 ------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 EKF Q+ + + L ++ R+ E + + + Sbjct: 612 EQLPLLFEKFQQLDTPY-RRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 670 >gi|146277153|ref|YP_001167312.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145555394|gb|ABP70007.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 346 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 14/237 (5%), Positives = 53/237 (22%), Gaps = 32/237 (13%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 + A+ + + H++ +P+ A+ +E L ++ + ++ + Sbjct: 108 EQEQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAAREDPAARARFLAIMAREAGRMN 167 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLS 112 ++ + + A ++ + + L Sbjct: 168 RLVQDLLSLSRVEAEERVRPVTQVDVSAVIGQAVAALRPMAEAAGVAIERTGETGHLPLP 227 Query: 113 RERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLA---R 159 + ++ + + + + + G Sbjct: 228 GDADQLTQVFHNLIENAVKYGASGKLVTVEVTRDPDGLARLGPAVRIEVVDRGEGIDAIH 287 Query: 160 FPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P + + + V + + ++ R E L Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFRIESELGKGSRFIVTLP 344 >gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1041 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 27/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-- 59 AK + S+ S + H++ +P+ AI +++ E + Sbjct: 659 AKEVAERASAAK--TRFLSSMSHELRTPMNAILGFAQVMQSDPNEPLSESQRECTREIIQ 716 Query: 60 -------------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 M +++ + + + Sbjct: 717 AGGHLLELINDVLDLAKIEENRISLKMAPVHVQEVIREAVALVTPMANRKGIRLYHGMGE 776 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLA- 158 V + +IL+NL GG+V IS + ++ ++ G Sbjct: 777 GVCERCDVQADRTRLKQILINLATNGVKYNREGGEVEISCRLAEAGRARIEVRDTGIGIA 836 Query: 159 --RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + F + TI+ I V L L E + L Sbjct: 837 ALKQGDIFEPFHRLVEDGTIEGTGIGLSIVKRLVEAMGGTLGLESQEGQGSRFWFQLP 894 >gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329] Length = 858 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 52/242 (21%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 ++ + A +++ H+I +PI I +LL + +E I + Sbjct: 466 KQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVEAEEQKNQIDVLRH 525 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102 S L + ++ + D + + + + Sbjct: 526 SGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQL 585 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNL 157 E +IL NL A P G + + + G Sbjct: 586 DGNVEIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVLVVEISDTGIG 645 Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + V L + Sbjct: 646 IESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVT 705 Query: 213 LE 214 L Sbjct: 706 LP 707 >gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1353 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 826 KEHQEEINQMKMRFFI--NISHELRTPLTLILTPLQEIINKISDRWTRNQLEYIQRNANR 883 Query: 63 RLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107 L + Y + ++ L + D +A K++ + E Sbjct: 884 LLHLVNQLMDYRRAELGVFELKAKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKE 943 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ I+ NL A G +T+++++ N + + G K +I Sbjct: 944 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051 >gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 809 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + + + H+I +P+ I ++LL ++ + + L+ SA Sbjct: 418 ARDKAETANRAK--SEFLANMSHEIRTPLNGITGMMQLLQTTRLDSNQKEYVDLALSSAS 475 Query: 62 IRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106 + + + V E F + Sbjct: 476 RLTRLLSDILDLSRVEAGRMVILEEEFNVQELCRSVCELFRIQAGEKGIELEYTLDPSLP 535 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP 161 + +IL NL + G +++ + ++ G+ P Sbjct: 536 SRLMGDETRLQQILFNLVGNSLKFTREGRVRINWTLQKRGLDRHQVLITVTDTGSGI-AP 594 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 EK + V + + V L + + L Sbjct: 595 EKLDDLFQPFVQEDGSSTRRHEGAGLGLSIVSRLVDLMHGTISVDSAPGEGTAFYIFLP 653 >gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AQ3810] gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037] gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AQ3810] gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037] Length = 858 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 52/242 (21%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 ++ + A +++ H+I +PI I +LL + +E I + Sbjct: 466 KQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVEAEEQKNQIDVLRH 525 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102 S L + ++ + D + + + + Sbjct: 526 SGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENRL 585 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNL 157 E +IL NL A P G + + + G Sbjct: 586 DGNVEIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVLVVEISDTGIG 645 Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + V L + Sbjct: 646 IESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVT 705 Query: 213 LE 214 L Sbjct: 706 LP 707 >gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 865 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 27/233 (11%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 I + L L H++ +P+ I +LL + + Sbjct: 488 EIANRIKDEFLAVL-----SHELRTPLNPILGWSKLLRSRQFDAATTDRALETIERNATL 542 Query: 64 LKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + E + V G+ Sbjct: 543 QTQLIEDLLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPELGQ 602 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---- 163 + + +++ NL A GG V I ++ ++ + G Sbjct: 603 VMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQIQVIDTGKGITPEFLPYVF 662 Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + + DG + V + + + + + L Sbjct: 663 DYFRQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQATSPGEGLGATFTVNLP 715 >gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633] gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030] gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AN-5034] gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus Peru-466] gi|50401015|sp|Q87GU5|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633] gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus Peru-466] gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AN-5034] gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030] Length = 858 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 52/242 (21%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 ++ + A +++ H+I +PI I +LL + +E I + Sbjct: 466 KQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVEAEEQKNQIDVLRH 525 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102 S L + ++ + D + + + + Sbjct: 526 SGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQL 585 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNL 157 E +IL NL A P G + + + G Sbjct: 586 DGNVEIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVLVVEISDTGIG 645 Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + V L + Sbjct: 646 IESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVT 705 Query: 213 LE 214 L Sbjct: 706 LP 707 >gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 594 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 +++ L + + H++ +PI + E + + G + E +L ++ + Sbjct: 354 RDMTEERRHDKLRKDFIANVSHELRTPISMLQGYSEAIIDDIAGTDQEKKELAKIIYDES 413 Query: 61 II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107 + + + + + +A ++++ + + Sbjct: 414 LRMGRLVNELLDLARMEAGHIDLSYEEIEVKTFCERITRKFQGLAKEQQLTLDFIYRGDE 473 Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 ++L NL A GG V ++ +N + G + Sbjct: 474 GKRIQVDPDRLEQVLTNLLSNAIRHTDPGGTVQLACHVMENGVKIDVTDTGTGIPEEDLP 533 Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + + +A Sbjct: 534 YVFERFYKADKARTRGRSGTGLGLAIVKNIVDAHSGEISVHSKQQEGTTFTAFFP 588 >gi|332981016|ref|YP_004462457.1| histidine kinase [Mahella australiensis 50-1 BON] gi|332698694|gb|AEE95635.1| histidine kinase [Mahella australiensis 50-1 BON] Length = 440 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/206 (9%), Positives = 63/206 (30%), Gaps = 11/206 (5%) Query: 19 CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 S + H++ + I + ++LL + ++++Q + + + + Sbjct: 231 ASVLSHEVRNSISTLGAYIQLLQLDKLVDDERANKMLQEMARVNRMMQDFRRLTKYIKFK 290 Query: 74 TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHAS 129 + + L + ++ + +I ++ + ++ LNL A + Sbjct: 291 FSNFNINAVLNKVIEFILPKAQLKGIEIITELDDREIYINGDMDAIEQVFLNLLENAIQA 350 Query: 130 LPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 + R + I S + ++ +G E + + I + Sbjct: 351 IERDRGHIWIKSMRSNDSVKIIIRDDGCGI-SDENKANLFKPFFTTKASGSGIGLAFCKD 409 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + + L Sbjct: 410 VLKAHGGDITAESQEGEGTSFTITLP 435 >gi|307289242|ref|ZP_07569198.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|306499951|gb|EFM69312.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|315163856|gb|EFU07873.1| PAS domain S-box [Enterococcus faecalis TX1302] Length = 591 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + D+ + +++ + + Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 420 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585 >gi|295105314|emb|CBL02858.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. [Faecalibacterium prausnitzii SL3/3] Length = 592 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + +L A L I HD+ +P+ +I + E LD + Sbjct: 351 KEQAALQARNEELRANLLRTISHDLRTPLTSISGNASNLLSNGETLDTETRNKICTDIFD 410 Query: 55 LSSMS---------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + +D +I + Sbjct: 411 DAQWLIGLVENLLSITRIEDGRMNLQISPQLMDEMIEEALHHVNRKSCEHTITTQYGDEI 470 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +R ++++NL A P G + IS ++ + + NG K Sbjct: 471 LLVNVDARLIMQVVVNLVDNAIKYTPVGSVIQISAYRKDHQVVVDVADNGPGIPDRAKAQ 530 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + L + V S L Sbjct: 531 VFEMFYTGQSRIADSHRSLGLGLPLCRAILTAHGGTLTLRDNIPNGSVFSFALP 584 >gi|294776221|ref|ZP_06741706.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294449904|gb|EFG18419.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 757 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 58/224 (25%), Gaps = 20/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 +L + + H+I +P+ AI LL + E +I ++ + + Sbjct: 533 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 592 Query: 65 K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 M + + QVI + Sbjct: 593 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 652 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N A +G D + + ++ G E I + Sbjct: 653 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHIFVEDTGAGIPKEEL-QMIFERFY 711 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + + + +A+L Sbjct: 712 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755 >gi|269965582|ref|ZP_06179696.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus 40B] gi|269829807|gb|EEZ84042.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus 40B] Length = 601 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48 + + + L L + + I H++ +P+ AI + E L + Sbjct: 357 LRVTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLKKEKYERVEDNLTR 416 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103 + L + + F + G + L + + + RV + Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGDELAQSRLFPVIASVKELMKPAFKSGRVTLETNLPE 476 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + ++L+NL A +L + + + + NG Sbjct: 477 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVELSVEHDEHTDLVWIHVDDNGPGLG 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + + +L + S L Sbjct: 537 SFSLSD-LCEPFLTTKLNGLGLGLSISQQILASMNGKLCAHNREQGGARFSLCLP 590 >gi|257419429|ref|ZP_05596423.1| predicted protein [Enterococcus faecalis T11] gi|257161257|gb|EEU91217.1| predicted protein [Enterococcus faecalis T11] Length = 576 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + S + H++ +P+ ++ E L ++ + D+ + +++ + + Sbjct: 346 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 405 Query: 65 KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + A + + Q + V + Sbjct: 406 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 465 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 I+ NL A G++TIS + S++ G + +I + Sbjct: 466 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 524 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V ++ + + L Sbjct: 525 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 570 >gi|254881711|ref|ZP_05254421.1| two-component system response regulator sensor kinase [Bacteroides sp. 4_3_47FAA] gi|319643677|ref|ZP_07998294.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_40A] gi|254834504|gb|EET14813.1| two-component system response regulator sensor kinase [Bacteroides sp. 4_3_47FAA] gi|317384707|gb|EFV65669.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_40A] Length = 757 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 58/224 (25%), Gaps = 20/224 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 +L + + H+I +P+ AI LL + E +I ++ + + Sbjct: 533 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 592 Query: 65 K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 M + + QVI + Sbjct: 593 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 652 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172 +++ N A +G D + + ++ G E I + Sbjct: 653 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHIFVEDTGAGIPKEEL-QMIFERFY 711 Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + + + + +A+L Sbjct: 712 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755 >gi|288942183|ref|YP_003444423.1| histidine kinase [Allochromatium vinosum DSM 180] gi|288897555|gb|ADC63391.1| histidine kinase [Allochromatium vinosum DSM 180] Length = 368 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 27/232 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIR 63 S L A+ L + I HD + +GAI ELL++ + I+ +S A Sbjct: 118 QSRRLEAVGTLAAGIAHDFNNILGAILGFSELLEDELAPESAGRHHLAYIQQASFRARDL 177 Query: 64 LKFMRLAFGY----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRERA 116 + M V+ + + + ++ + RV+ + + + Sbjct: 178 IARMLTFARDLADSPVPVEVVALVRETLALLRASLPAGARVEFTPAVDEAWVLAEPSQIQ 237 Query: 117 KILLNLFMVAHASL-----------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +I++NL + A ++ + + + S+ +G PE Sbjct: 238 QIVMNLCINAADAIGQAQGRIEIGVEWVRRPEGTPAARADLVRLSVSDDGEGM-TPEVRE 296 Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ D + + + L + ++ E L + Sbjct: 297 RVFDPFFTTKAPGKGSGLGLSVIHGLVGKLGGQIRIESAPGRGSRFVIELPR 348 >gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 535 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 72/234 (30%), Gaps = 22/234 (9%) Query: 3 KNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIR 54 + L S L + + + H++ +P+ ++ EL+ + + ++ + Sbjct: 287 SQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSGPITPEQRENLLDIKT 346 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWT--- 105 + ++ + +A GS+ + + + IA + + Sbjct: 347 SAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMSAIAHQNGISLDVEKTT 406 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161 ++++NL A GG++T+S + I S++ G P Sbjct: 407 LPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITVSANGEGDFAIISVQDTGIGISPELLP 466 Query: 162 EKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G+ + V LA ++ + L Sbjct: 467 HIFEKFRQGDHPKQRRKGTGLGLALVKTLAELQDGKVAVDSEVGEGSCFKIYLP 520 >gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 758 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 26/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRL 55 AK + S + S + H++ +P+ AI EL LD + ++ + Sbjct: 391 AKRKAEDASQAK--SEFLSLMSHELRTPLQAIIGYTELVIEELKLDSDDRHVKDLERVIH 448 Query: 56 SSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTG 106 + + + + +A +GS+D + + ++++ + +V Sbjct: 449 NGERLLRLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLEKSEIQVVQEVDD 508 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKF 164 + + K+L L + + K V+I + S+ G PE+ Sbjct: 509 GESLPKADPEKLLHILINLLGNASKFAPKGVVSIKAYHRAEKIYISVADTGIGM-SPEQQ 567 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + L + E L Sbjct: 568 QHIFDPFRQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVESELGKGSTFIVELP 623 >gi|190575870|ref|YP_001973715.1| putative histidine sensor kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190013792|emb|CAQ47429.1| putative histidine sensor kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 503 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 67/227 (29%), Gaps = 16/227 (7%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59 + ++ ++LL + + HD+ + + + +LL + + +I Sbjct: 140 ETELMRAQRLESLSLLAAGLSHDLRNILQPLLIMPDLLKARTDDPQLHHLADVIAECGRR 199 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LS 112 + M + I + + + + + V + D Sbjct: 200 GHEMAESMLSFVRGSRKPSERIEIDGLFDAVALLLRSNVPDAVRLELQVQDEGLVVDANY 259 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQI 167 E +++LNL + A ++P GG+++++ + + + G + + + Sbjct: 260 TELQQVMLNLALNAIQAMPNGGRLSLTASHAGHRDGVDWMHIRVADEGIGM-DADTLSHL 318 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + D + + + L Sbjct: 319 FNPFFTTKADGTGLGLISCKRIVEGAGGSIHVSSQPGQGTCFELRLP 365 >gi|91227735|ref|ZP_01261962.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus 12G01] gi|91188382|gb|EAS74677.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus 12G01] Length = 601 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48 + + + L L + + I H++ +P+ AI + E L + Sbjct: 357 LRVTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLKKEKYERVEDNLTR 416 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103 + L + + F + G + L + + + RV + Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGDELAQSRLFPVIASVKELMKPAFKSGRVTLETNLPK 476 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159 E + ++L+NL A +L + + + + NG Sbjct: 477 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVELSVEHDEHTDLVWIHVDDNGPGLG 536 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ + + +L + S L Sbjct: 537 SFSLSD-LCEPFLTTKLNGLGLGLSISQQILASMNGKLCAHNREQGGARFSLCLP 590 >gi|148264748|ref|YP_001231454.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146398248|gb|ABQ26881.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 776 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 61/242 (25%), Gaps = 30/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + M+ + L I HD + + +I E+ + E++ ++ SS Sbjct: 379 ERQLSQAQRMEAIGTLAGGIAHDFNNNLASIITCTEMARDDVPEGSPMRELLDVVLKSSY 438 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------IDL 111 +K + + + I + + + Sbjct: 439 RGRNLVKQILTFSCQVEQERQPVQVERIISECLKLLRASFPTSIEISQNIAGRPGLVQAD 498 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----------------KNENIFSLKING 155 + +I++NL A ++ G + + +++ G Sbjct: 499 PTQMHQIVMNLCTNAGHAMQANGGKLDIMLVNIDLDTAAVSGFPDLPSGPYLRLTVQDTG 558 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I D + + + V + + + L Sbjct: 559 HGMDSA-TMERIFDPFFTTKGHGEGTGLGLSVVHGIVKNHGGAITVNSEPGKGTSFHVFL 617 Query: 214 EK 215 + Sbjct: 618 PR 619 >gi|291294435|ref|YP_003505833.1| histidine kinase [Meiothermus ruber DSM 1279] gi|290469394|gb|ADD26813.1| histidine kinase [Meiothermus ruber DSM 1279] Length = 423 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 MA+ + L + + + I H++ +P+ + LE + + +E + + + Sbjct: 189 MAEALE-RLEAERRA--MIADIAHELRTPLTVMQGRLEAIQDGVMPLEMSEVDRLHQQAR 245 Query: 59 SAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106 ++ +R ++ + + + + R Sbjct: 246 LLSRLVEDLRTLSLADAGRLNLTLQPLNLAELADRMADTFQAALEAKRITLERRLPEGPV 305 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 S A+++ NL A P GG + + V + + +G Sbjct: 306 LVRADSDRLAQVIGNLLSNALGHTPAGGWIGLEVAAEAAQARLRVLDSGPGIPAEALNKV 365 Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L +K + + V L Sbjct: 366 FDRFYRAEASRSRATGGSGLGLSIVKALVELHKGTVTARNRPEGGAVFEVRLP 418 >gi|257052938|ref|YP_003130771.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus utahensis DSM 12940] gi|256691701|gb|ACV12038.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus utahensis DSM 12940] Length = 385 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 60/231 (25%), Gaps = 20/231 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + + + S+ A + S HD+ P+ + + ++LL+ +E M+ Sbjct: 145 REALEKSNESLREFAYIAS---HDLQEPLRMVSSYVDLLEREYGDQFDDEAEEYMEFAVN 201 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEK 108 + + + + + + + + V Sbjct: 202 GAKRMKRMINSLLEYSRVHTQAEEFDEVDAAEVFESARQDLELLIADHSAEITVGDLPTA 261 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFT- 165 + ++ NL + G I V + F++ NG E+ Sbjct: 262 SADRDQLGQVFQNLLKNSIEHAGEDGTPQIDVTVTDRPEAYEFAVADNGPGIPADEQDDV 321 Query: 166 -QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + + I + + + E + K Sbjct: 322 FDIFRQGANAEAGNTGIGLAITRRIVQRHGGEIWIESEPGEGAAFKFTIPK 372 >gi|225574600|ref|ZP_03783210.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM 10507] gi|225038214|gb|EEG48460.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM 10507] Length = 442 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K L + + + + H++ +P+ AI EL++ E E + Sbjct: 207 KKQHEDILQNARIRQEFTANVSHELKTPLTAISGYSELIENRMAEGEAAVRFAKEIHHSS 266 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------- 110 RL + + +DS+ E V +A + EK Sbjct: 267 NRLLTLINDVIHLSELDSMQLEETKEMVDLYEVARSCVAMLQLQAEKHQVNLALLGVSCQ 326 Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 ++ +++ NL A +GG V ++V+ S + I S+K G E +I Sbjct: 327 VLSTRQKMEELVYNLCDNAIRYNNKGGSVYVTVRPSGKKVILSVKDTGIGI-PKEHQERI 385 Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + V + + + + + + + Sbjct: 386 FERFYRVDKSRSKSTGGTGLGLAIVKHIVAGSNASMELDSEEGKGTEIRVI 436 >gi|5052340|gb|AAD38510.1|AF133262_2 histidine protein kinase-response regulator hybrid protein CvgSY [Pseudomonas syringae pv. syringae] Length = 671 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +++ S + A+ L I HD + + I SLELL + +L R Sbjct: 282 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGA 341 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ L F R VD + +E++I + ++V + Sbjct: 342 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 401 Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151 + ++ LNL + A ++PRGG++TI + + Sbjct: 402 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWTDERGSQGRDLIPGQYLSLCV 461 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE ++ D + + V ++ ++ + Sbjct: 462 SDTGTGM-SPEVINRVFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPGQGTNM 520 Query: 210 SALLEK 215 L + Sbjct: 521 CLYLPR 526 >gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 611 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56 +A+ + + + H++ +P+ AI E++ + + +L Sbjct: 338 LARTAAERADAAK--TRFLATMSHELRTPLNAIIGFSEMIVQEATLPLDATRRKEYAQLI 395 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101 + S L + + + + + + Sbjct: 396 NDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLNGCNLLALKARDNGIELVTRV 455 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + I R +I+LNL A RGG+VTIS + + + +G Sbjct: 456 PENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLRVMDDGVGIAQE 515 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + V L ++ + + + ++ +L Sbjct: 516 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGEIDVQSKVEEGTTVTVMLP 573 >gi|325972366|ref|YP_004248557.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy] gi|324027604|gb|ADY14363.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy] Length = 935 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 56/225 (24%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + +R+ H+I +P+ I LL++ ++ M+ ++ S + + ++ Sbjct: 319 SRFLARVSHEIRTPLNGIRGMSYLLEKTSLDANQMRYVKTISGATQTMQSIINDILEFSR 378 Query: 76 SVD----------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + + + + + A+IL Sbjct: 379 LDEDRIILENIPFALDDVLENCISIESYLIQQKGLHFRLNQPDDVPQHLVGDPTRLAQIL 438 Query: 120 LNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQIVDGN---- 171 +NL A G F +K G + + Sbjct: 439 INLLNNAVKFTEAGSIDLTVQVQTLAEQSCSLSFEVKDTGIGMNEQQ-MENLFKPFVQAN 497 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L + L +A + Sbjct: 498 ASIHRKYGGSGLGLSIVKALVEKMGGTLTVTSEMGKGSAFTATIP 542 >gi|304392331|ref|ZP_07374272.1| two-component sensor/response regulator hybrid [Ahrensia sp. R2A130] gi|303295435|gb|EFL89794.1| two-component sensor/response regulator hybrid [Ahrensia sp. R2A130] Length = 708 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/221 (9%), Positives = 56/221 (25%), Gaps = 23/221 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + I H++ +P+ + +LL ++ + + S L + Sbjct: 242 SRFLATISHEVRTPLNGVMGVAQLLARTPLDATQRDHLSILKTSGDTLLALIEDLLDTAR 301 Query: 76 SVD----------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + + + + + + ++L Sbjct: 302 MEQGDLSIQTEPVKLEQLLEGVAAMMASRAAAKSLPISTYIDPTLPASILADGGRLRQVL 361 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 +NL A +G + + S +E + G ++ +I V Sbjct: 362 VNLLGNALKFTDQGSVSLCAHRHSIDELCLVVSDTGPGIADKDR-DRIFQPFVQTDDGST 420 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + D V + L Sbjct: 421 RAHNGAGLGLAISRHIVVRMGGDISVSTGKDSGSVFTVTLP 461 >gi|229019212|ref|ZP_04176044.1| hypothetical protein bcere0030_37220 [Bacillus cereus AH1273] gi|229025457|ref|ZP_04181869.1| hypothetical protein bcere0029_37570 [Bacillus cereus AH1272] gi|228735849|gb|EEL86432.1| hypothetical protein bcere0029_37570 [Bacillus cereus AH1272] gi|228742100|gb|EEL92268.1| hypothetical protein bcere0030_37220 [Bacillus cereus AH1273] Length = 424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 67/224 (29%), Gaps = 11/224 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 + + +++V+ L + + H++ +P+ + ++LL+ + Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ T++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIVIRVKDSGVGM-TKEQLTRLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 840 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 60/238 (25%), Gaps = 27/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + + + H+I +PI I ++LL+ ++ E Q +++ SA Sbjct: 402 ARDEAEAANRAK--SEFLANMSHEIRTPINGIMGMMQLLEATSLDVEQAQYVQMGLTSAR 459 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 + + D + ++ + + Sbjct: 460 RLTRLLSDILDLSRIEAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNIALEYSLDPQLP 519 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP 161 + +IL NL A +G + + ++ G Sbjct: 520 EILLGDETRLQQILFNLVGNALKFTEQGRVQVNWHLMKRRERDIQVLLTVSDTGIGMTPH 579 Query: 162 EKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + E + D + LL Sbjct: 580 RAGDLFKPFVQAENAYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDAGSTFNILLP 637 >gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 676 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 66/240 (27%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 ++ L + ++ + + H++ +P+ I +L+ + E + Sbjct: 158 RSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTELNPEQRTYVEAVRT 217 Query: 59 SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQV 102 S + + G +D D+ + + I + V Sbjct: 218 SGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAPRAQDKGIEIALDVAE 277 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLAR 159 + + + +IL+NL A RGG + + E + ++ G Sbjct: 278 DFPAAVLGDADRVRQILINLAGNAIKFTERGGVGVSLGFARAGTGGEVVLAVADTGPGIP 337 Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DG+ + + + L R+ + LL Sbjct: 338 EERLPILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRMGGRIEADSRLGRGSTFRVLLP 397 >gi|83310944|ref|YP_421208.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945785|dbj|BAE50649.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 525 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 54/224 (24%), Gaps = 14/224 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54 MA + + + H+ +P+ I ++ELL E + + + Sbjct: 304 MAATQERRADYIR---DFAAHVSHEFKTPLATITGTVELLREHLTDMTPEDRERFLDNLE 360 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDL 111 + ++ + G VI + Sbjct: 361 SEASRLSRLVQRLLDLARADVMPAGQDGCCRPLAVIAGLAERAGLTIEIMADGDMMVRMG 420 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + + NL A G +VT++++ +E + L +G Sbjct: 421 AEAMETVFGNLLDNACRHGGPGSRVTLALRRDDDEVVLILADDGPGISPANAGRVFTPFF 480 Query: 172 VE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + + L Sbjct: 481 TTARKEGGTGLGLSIVRSLVTAHGGAIALRPSE-RGARFEIRLP 523 >gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 810 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 59/237 (24%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 ++K S+ + + + H+I +P+ + + LL E ++ + + + S Sbjct: 289 LSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDLQAKQREYAEIIRSSG 348 Query: 61 IIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + ++ M V + E+ + + ++ + Sbjct: 349 ELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEV 408 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFP 161 + ++L NL A +G + + G Sbjct: 409 PDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSDTGIGI-PQ 467 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + ++ + V L + + V Sbjct: 468 DMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFT 524 >gi|307299747|ref|ZP_07579540.1| integral membrane sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914613|gb|EFN45006.1| integral membrane sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 418 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 69/239 (28%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSS-----MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVM 50 +++ + + S + A + S I H++ +P+ ++ EL+ + +E + Sbjct: 176 LSRRLEKTMESVDSERDKMRAFI-SFISHELKTPLASLKTMNELMLDGKNMEREQIEEFL 234 Query: 51 QLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99 + +R +F + + I ++ Sbjct: 235 GRSGEDIERMEWLIGDVLNIARIESGAIRFSFRKADLAELARDIMRNYIEIARRKKIEIS 294 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + + + + NL A P GG V++S+ S+ S+ G Sbjct: 295 LNTESSAIVFCDEKWITQAIGNLLKNAIDYSPEGGSVSVSISGSETYAYISVSDEGPGIP 354 Query: 160 FPEKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S+ + + ++ + + + + L Sbjct: 355 QEDSSKIFQSFYRGSSAGRSKKGSGLGLSLAKAIIERHQGDIKLKSSTERGSTFTIELP 413 >gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 995 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK ++ + S++ H++ +P+ I +LL+ +E +S Sbjct: 258 AKEEAEKVNMAK--SSFLSKMSHELRTPLNGILGFAQLLEMDESLNEQQHDFVQEILSGG 315 Query: 62 IRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L + ++ + I V + + + Sbjct: 316 SHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPLAKKKNISIYSQLDQWE 375 Query: 109 IDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +ILLNL A GKV + + +N+ + G E + Sbjct: 376 DMMVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQENKQYIHIVDTGVGFSVEE-Y 434 Query: 165 TQIVDGNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ + + I V L H + L Sbjct: 435 TKVFVPFYRIENTKEEGTGIGLSLVKQLVHLMGGDINVTSNKGTGSEFCFSLP 487 >gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 597 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + L L + + H++ +PI + E + + + E+ Q+I Sbjct: 356 LRDMTEERLHD-KLRKDFIANVSHELRTPISMLQGYSEAIIDGIASSEEEKTELAQIIYD 414 Query: 56 SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104 S+ + + A G + + + + + + Sbjct: 415 ESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAKEHGIKLSGDIEE 474 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 ++L NL A P GG+VT+ ++ +++ G + Sbjct: 475 NIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQMEVLDQGVKVNIQDTGIGISEEDL 534 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + + ++ + S L Sbjct: 535 PFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEGTTFSFFLP 590 >gi|261419764|ref|YP_003253446.1| histidine kinase [Geobacillus sp. Y412MC61] gi|319766580|ref|YP_004132081.1| histidine kinase [Geobacillus sp. Y412MC52] gi|261376221|gb|ACX78964.1| histidine kinase [Geobacillus sp. Y412MC61] gi|317111446|gb|ADU93938.1| histidine kinase [Geobacillus sp. Y412MC52] Length = 367 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 60/217 (27%), Gaps = 14/217 (6%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + L+ + S H+ +P+ AI ++LL + +I R+ Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 211 Query: 70 ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L + + VD V + + + ++L+ Sbjct: 212 ASRKEIVESEKETFSLRQLLEEIIEFLYATIVDSDVDLSVAIDESIHIFAYKDQLRQVLV 271 Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 N+ + + ++ K + I + NG + I + + Sbjct: 272 NILLNSIEAVKEREKPRRINIAARCQDGSIIIEIANNGPSI-PADIVETIFEPFFTTKKL 330 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y + ++ + +D S L Sbjct: 331 GTGIGLYICKKVIEDHGGDIRCLSDED-MTTFSIRLP 366 >gi|218531838|ref|YP_002422654.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524141|gb|ACK84726.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 684 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53 A+++ ++++ L + HD + + I +S +LL + ++ Sbjct: 299 AQDVLRQSQKLEVIGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAEDRRSRYIEAISNTV 358 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ L F R + + + +++ V ++ Sbjct: 359 DRAAKLTGQLLAFARRQTLKPKVFAACDSVRSLSEMLGTLTGSRITVVTELPENACFVNA 418 Query: 114 ERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNL 157 + ++ L+N+ + A ++ + V S+ G+ Sbjct: 419 DPSQFDTALVNMAVNARDAMEGEGQLTIRVEPVEQMPSVRAHPAVQGPFVAVSISDTGSG 478 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + + V A ++ ++ E + L + Sbjct: 479 I-AKDVVERIFEPFFTTKAVGQGTGLGLSQVFGFAKQSHGEVVVESEVGRGTTFTLYLPR 537 >gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha] Length = 848 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ S + + + + H+I +P+ I LL + + + + SA Sbjct: 172 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELSPRQLDYLGTIEKSA 229 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104 + ++ + L D + + V Sbjct: 230 DNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELVSLVYRDT 289 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161 + +IL NL A G Q+ + S++ G Sbjct: 290 PLALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDTGIGLSNQ 349 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLE 214 + + + L + + + S L Sbjct: 350 DVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLP 409 Query: 215 K 215 K Sbjct: 410 K 410 >gi|27380599|ref|NP_772128.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353764|dbj|BAC50753.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 907 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/240 (8%), Positives = 65/240 (27%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53 + MD + L + HD + + I ++E++ E + Sbjct: 524 TEERLRQSQKMDAIGQLTGGVAHDFNNVLTVITGTIEIIQEGLADRPQFAAIAQLIDDAA 583 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + L F R +D + + ++++ + + + Sbjct: 584 ARGAEITSQLLTFARRQPLEPREIDVNALVVETAKLLKPILGEHIEIVTRLADDAWSAMA 643 Query: 114 ERAKILLNLFM---VAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNL 157 + +++ + A ++P G + + ++ G+ Sbjct: 644 DPSQLSSAIVNLAVNARDAMPDGGRLTLETANRELDGVRSDGDIMRGAFVMIAVTDTGHG 703 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + + + V A + + E + V+ L + Sbjct: 704 I-PADIRERVFEPFFTTKGVGRGTGLGLSMVYGFARQTGGTVAIESEEGQGTVMRLFLPR 762 >gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] Length = 1353 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 826 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 L + Y + + L ++ I + K Sbjct: 884 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ N + + G K +I Sbjct: 944 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051 >gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1298 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 771 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 828 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 L + Y + + L ++ I + K Sbjct: 829 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 888 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ N + + G K +I Sbjct: 889 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 947 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 948 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 996 >gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1298 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 771 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 828 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 L + Y + + L ++ I + K Sbjct: 829 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 888 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ N + + G K +I Sbjct: 889 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 947 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 948 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 996 >gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1353 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 826 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 L + Y + + L ++ I + K Sbjct: 884 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ N + + G K +I Sbjct: 944 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051 >gi|258591885|emb|CBE68188.1| putative Sensor protein yycG [NC10 bacterium 'Dutch sediment'] Length = 610 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 61/240 (25%), Gaps = 33/240 (13%) Query: 8 NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 L ++ + + H++ +P+ ++ LE L ++ +++I + Sbjct: 362 ELRRLEAARTEFVANVSHELRTPLTSVRGYLETLLEGALEDREHARPFLEVIHKHTERLG 421 Query: 62 IRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKI 109 L + + + ++ + + + Sbjct: 422 RLLDDLLDLSNLELGKVTLHRQPTVLAEVVHNVMAIYGPQATKQKIELRTELPDDLPRVM 481 Query: 110 DLSRERAKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLAR 159 A++L+NL +G ++ + +++ G Sbjct: 482 ADRDRIAQVLINLLDNGFKFTQKGGAVRVSASLAHPTPDTLHPIVDFVEVAVQDTGIGIP 541 Query: 160 FPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V L + LL E + + L Sbjct: 542 SQDLPRITERFYRVDRARSREMGGTGLGLAIVKHLVKAHGGELLIESELNKGTTVRFTLP 601 >gi|253681304|ref|ZP_04862102.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] gi|253562542|gb|EES91993.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] Length = 469 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 75/235 (31%), Gaps = 23/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 MAK++ + + S + H++ SPI +I + + + E+ + + Sbjct: 236 MAKSLE---EVEENRRVFISNVSHELRSPITSIKGFIGGILDGVIPKEKENYYLSVAYEE 292 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + + + ++ V + Sbjct: 293 IQRLTRLINDLLDLSSIEAGKFVLNVKEEDINEIIRLSIIKFETVIKSKKINVEVWLDEE 352 Query: 106 GEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + R+ +++ NL A G + I + + S+ +G + Sbjct: 353 RLSVLVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVKGQKVFVSVYNDGPNISEEDGK 412 Query: 163 -KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + G+ T+ S + V + ++ + E ++ V + L+K Sbjct: 413 YIWDRFYKGDKSRTLKVSTGLGLSIVRRIVTQHGGDVWFENRENKGVKFTFTLKK 467 >gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] Length = 1353 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 826 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 L + Y + + L ++ I + K Sbjct: 884 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ N + + G K +I Sbjct: 944 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051 >gi|227358257|ref|ZP_03842598.1| histidine kinase [Proteus mirabilis ATCC 29906] gi|227161593|gb|EEI46630.1| histidine kinase [Proteus mirabilis ATCC 29906] Length = 778 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SAI Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELSPEQLNYLKTIHVSAITLGNIFNDVIEMDKIERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 I L + +FI+ + + Q + + +IL NL Sbjct: 348 KIQLDNQPIDFTEFISDLENLSGLLVQPKGLKFTLEAQETLPHKITTDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A G Q++ ++ F +K +G E + Sbjct: 408 GNAVKFTQEGEIKVRIWQEAPDKLFFEVKDSGIGIPQGELEKIFAMYYQVNDSQGGRSAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + E H + + + Sbjct: 468 GTGIGLAVSKRLAQHMGGDIHVESELGHGSIFTLSI 503 >gi|197287481|ref|YP_002153353.1| aerobic respiration control sensor protein ArcB [Proteus mirabilis HI4320] gi|194684968|emb|CAR47176.1| aerobic respiration control sensor/response regulatory protein [Proteus mirabilis HI4320] Length = 778 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SAI Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELSPEQLNYLKTIHVSAITLGNIFNDVIEMDKIERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 I L + +FI+ + + Q + + +IL NL Sbjct: 348 KIQLDNQPIDFTEFISDLENLSGLLVQPKGLKFTLEAQETLPHKITTDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A G Q++ ++ F +K +G E + Sbjct: 408 GNAVKFTQEGEIKVRIWQEAPDKLFFEVKDSGIGIPQGELEKIFAMYYQVNDSQGGRSAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + E H + + + Sbjct: 468 GTGIGLAVSKRLAQHMGGDIHVESELGHGSIFTLSI 503 >gi|182415836|ref|YP_001820902.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177843050|gb|ACB77302.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 846 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 32/244 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53 M + + ++ + LL I HD + + I L + + Sbjct: 465 MERRL-LESQKLESLGLLAGGIAHDFNNILTGILGHANLARCAPASETELVEHLRQIEAG 523 Query: 54 -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ L F T +VD + D +++ + V R+Q++ E + ++ Sbjct: 524 AARAAELCQQMLAFSGRGRFVTETVDLNRIVRDTLPLLQGSLPVRARLQLALAPEPVLVT 583 Query: 113 RERAKILLNLFMVAH----------------------ASLPRGGKVTISVQDSKNENIFS 150 + + + + G + + + Sbjct: 584 GDATQFRQIAMNLILNAGEALPPAGGQVAVRSGRRAFDATFLAGVRGQNNLAAGDYVFLE 643 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + G PE +I D + + V+ + + L + + + Sbjct: 644 VHDTGCGM-TPETIAKIFDPFFTTKFTGRGLGLAAVLGIVRGHAGGLRVDSEPGKGSIFT 702 Query: 211 ALLE 214 LL Sbjct: 703 LLLP 706 >gi|163740009|ref|ZP_02147414.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161386754|gb|EDQ11118.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 879 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L+ A L + + H++ +P+ + ++ELL+ + + + S Sbjct: 335 LTRTRDEALAGERAKADLLTVMSHEMRTPLTGVLGAVELLEGTALSSDQHDYVSAIRTSG 394 Query: 61 IIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + D + L D Q D + S Sbjct: 395 DRLMAHVNDVLQLSQLETSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSLHCSLGA 454 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE 162 D+ + L + +L V + + S+ G + Sbjct: 455 SGGDVLGRPVALKKVLVNLIENALQFTTDGAVSVDVQRLGQSDTVEISIADTGAGIAERD 514 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + + E + + L Sbjct: 515 L-DRIFEDFIRLDASYARSSEGTGLGLAITRRIVVALGGDISCESELGEGSLFTISLP 571 >gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 1660 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 58/220 (26%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIRLKFMRLAFGYT 74 + + H++ +P+ I ++L Q + + + + +A Sbjct: 1209 ANMSHELRTPLNGILGYAQVLKRDHHLLPCHQQALNTIHQSGEHLLTLIDDILDIAKIEA 1268 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------AKILLNL 122 ++ I ++E + + + + + + +ILLNL Sbjct: 1269 RKLELNISDIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKKCLRQILLNL 1328 Query: 123 FMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD----GNVES 174 A +G + + F++ G + G++ Sbjct: 1329 LSNAIKFTDQGQVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFHPFEQVGDLNR 1388 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L L E ++ + Sbjct: 1389 RAEGTGLGLSISRQLVELMGGTLQAESCEEKGSTFWFSIP 1428 >gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483] gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483] gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1353 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 K ++ M + + I H++ +P+ I L+ + + + +A Sbjct: 826 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 L + Y + + L ++ I + K Sbjct: 884 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943 Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G +T+++++ N + + G K +I Sbjct: 944 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V L + R+ + + S L Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051 >gi|109898070|ref|YP_661325.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109700351|gb|ABG40271.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 660 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 57/228 (25%), Gaps = 22/228 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAI 61 L + + H++ +P+ I N E+L + D + + +R + Sbjct: 300 EQDKLKDEFLAMLAHELRNPLAPIRNVSEILLNMEQRDPKLKNIGDILARQVRHMTHLMD 359 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113 L R++ DI + + + S Sbjct: 360 DLLDVSRISQNLINLQLEPTNFSDIVDLTIESQQSALDTKQHTLEVVDTPQDLYVNGDST 419 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172 + L N+ A P GG +T+ + NG + Sbjct: 420 RLVQSLSNVLNNAIKYTPEGGHITLECVADIETVQVIISDNGYGICPSMQGKVFELFAQV 479 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215 + + I V L + + H + L + Sbjct: 480 QQTLDRSQGGLGIGLNIVQRLVQMHGGSISVSSQGLGHGSCFTITLPR 527 >gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] Length = 1594 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 18/239 (7%), Positives = 61/239 (25%), Gaps = 26/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + + + H+I +P+ + ++LL E + + + ++ S+ Sbjct: 952 LERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRETNLSRDQVNMVSTIRDSS 1011 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEK 108 L+ + ++ + L + + + D + + Sbjct: 1012 FSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNAHQKDVGLYLEVEDNL 1071 Query: 109 ID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFP 161 + ++LLNL A + +++ NG Sbjct: 1072 PESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTEGELRIAVEDNGVGMTQD 1131 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + H + + Sbjct: 1132 QL-ERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTSKHHHGSRFTFTIP 1189 >gi|195977457|ref|YP_002122701.1| two component system histidine kinase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974162|gb|ACG61688.1| two component system histidine kinase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 336 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 22/227 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK 65 S +++ +++ HDI +P+ +I ++E + + E + I + ++ Sbjct: 103 ESEHEKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPREEERHYLNTISRQTNRLNQLVE 162 Query: 66 FMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + LI + Q+ + ++V+ KI+ Sbjct: 163 ELHMVSLNDQKQDDKQQLQIIYLEKLLIDMLSEFQLTLEQENRSVHIEVAKEVVKINSRY 222 Query: 114 ER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169 + ++I+LNL A +TI + + G + + F ++ Sbjct: 223 DALSRIMLNLVSNALKYSKANTALTIHAYQQEQSIRIDVIDQGQGIKKEDLPLIFKRLYR 282 Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 H + LA + + E S LL Sbjct: 283 VEASRNMKTGGHGLGLSIARQLARQLGGDIAVESQLGKGSCFSLLLP 329 >gi|171689430|ref|XP_001909655.1| hypothetical protein [Podospora anserina S mat+] gi|170944677|emb|CAP70788.1| unnamed protein product [Podospora anserina S mat+] Length = 2424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/245 (8%), Positives = 62/245 (25%), Gaps = 33/245 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------ 56 +N+ + ++ + + H++ +P+ + + ELL + G+ E M++ Sbjct: 1931 RNVKLAEEATKAKSIFLANVSHELRTPLNGVIGNSELLRDSGLNREQMEMADSIRVSADL 1990 Query: 57 ----------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + + E + ++ Sbjct: 1991 LLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIVQDINL 2050 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLAR 159 + + + ++L NL + G + D + F +K G Sbjct: 2051 PPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARIDEETPDKATLTFWVKDTGIGIS 2110 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--LS 210 + + L + + E ++ + Sbjct: 2111 QQHL-ENLFQPFSQADASTARKYGGSGLGLSICKSLIETMMEGTIQLESEENVGTTAWFT 2169 Query: 211 ALLEK 215 EK Sbjct: 2170 VTFEK 2174 >gi|196038847|ref|ZP_03106155.1| sporulation kinase B [Bacillus cereus NVH0597-99] gi|196030570|gb|EDX69169.1| sporulation kinase B [Bacillus cereus NVH0597-99] Length = 424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 66/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ T++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLTRLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax borkumensis SK2] gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax borkumensis SK2] Length = 867 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 26/237 (10%) Query: 4 NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + N + +L +R+ H+I +P+ + ELL E + I L + Sbjct: 358 SRAINARAESQAKSLFLARMSHEIRTPLNGVIGLAELLRETDPSPRQQEYISLIDSAGRT 417 Query: 63 RLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + D + L + Q+ + + + + + Sbjct: 418 LTALINDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPS 477 Query: 112 S-----RERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPE 162 +IL+NL A G V FS+ G E Sbjct: 478 DVVGDAIRLRQILINLVGNAVKFTRNGRVVLSLVCRRQYGEAPLYTFSVADTGIGLSQVE 537 Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + L + S ++ Sbjct: 538 QAQLFQRFTQASANTAQRYGGTGLGLSISRELVELMGGEIHVHSAPGQGSRFSFSIQ 594 >gi|89092215|ref|ZP_01165169.1| two-component sensor PhoR [Oceanospirillum sp. MED92] gi|89083303|gb|EAR62521.1| two-component sensor PhoR [Oceanospirillum sp. MED92] Length = 468 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/232 (9%), Positives = 59/232 (25%), Gaps = 19/232 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+++ + + H++ +P+ I LE + + +++ + A Sbjct: 192 ARDVSRLMRLEQTRQDFVANASHELRTPLTVIRGYLETFLDQELPRPLLRGLGSMQQQAR 251 Query: 62 IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + + + + + ++ + + Sbjct: 252 RMENLVSDLLLLSRLEASHQISDEQPIQLQSVVNHIMEGAEQLGNEKGHRFKLDIDPDHD 311 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKF 164 E NL A P G +++ FS+K NG P Sbjct: 312 LCGQEIELHSAFSNLVYNAVRYTPSEGDISVKWWVDDQGAHFSVKDNGPGIESIHLPRLT 371 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + + +L + + Sbjct: 372 ERFYRVDESRSSASGGTGLGLAIVKHVLARHNGQLTIKSKIGKGSTFACHFP 423 >gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 932 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 27/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + + + H+I +PI +I LL + + + + ++A Sbjct: 328 ARDEADKANRAK--SEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREYVENIGLAAK 385 Query: 62 IRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + ++ D L L I + ++ R++V Sbjct: 386 NLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVP 445 Query: 108 KI--DLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++++NL + + FS+ G Sbjct: 446 RFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDE 505 Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + F G+ + L K + E S L Sbjct: 506 QKKLLFQAFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562 >gi|229029236|ref|ZP_04185328.1| hypothetical protein bcere0028_13330 [Bacillus cereus AH1271] gi|228732075|gb|EEL82965.1| hypothetical protein bcere0028_13330 [Bacillus cereus AH1271] Length = 422 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L E ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFENLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L + Q + + + + Sbjct: 246 NGIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNIAIDYNFSTELDDVLVH 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + + + I+ N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L +D + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFAISIP 409 >gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1382 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE-LLD--EVGIEDEVMQLIRLSS 57 + L+ +D + S I H++ +P+ I LE +L E + + ++ Sbjct: 338 ERKRAEALAELDRAKTVFFSNISHELRTPLTLIQGPLEEVLHQTESPLAPSTRASLVMAQ 397 Query: 58 MSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + K + ++ D ++ V I V Sbjct: 398 RNVLRLQKLVNTFLEFSRLEAGRIRAFYQPTDLGTFTQELASVFRSAIEQSGMRLVVHCP 457 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEK 163 ++ + + ++ + + + F ++ G E Sbjct: 458 PLPQPVYVDHQMWEKIVLNLLSNAFKFTFEGEIKVSLTWAGDRVKFEIQDTGIGIAEAEI 517 Query: 164 ---FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G T + I V L H + + I L Sbjct: 518 PYLFDRFYRIQGAPSRTYEGSGIGLSLVQELVHLHGGTIEVNSIPAQGTCFRIYLP 573 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 68/227 (29%), Gaps = 20/227 (8%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM 58 + +D A + + HD+ +P+ AI N + + E ++L+R Sbjct: 1158 LQKRNQELDQFAYV---VSHDLKAPLRAIANLSQWIQEDLEDVLPQENQAQLELLRQRVY 1214 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 + + + +++ + + + ++ + + Sbjct: 1215 RMNNLIDSLLEYSRIGRTEETIEDVNVKNLLDDIIDSLSPPPSFTINVASSMPTVTTQKV 1274 Query: 117 ---KILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++L NL GK+ ISVQ+ KN F + +G + +I Sbjct: 1275 LLSQVLTNLISNGIKHHGRLDGKLEISVQEQKNFYQFFVSDDGQGI-PAQYQQKIFAIFQ 1333 Query: 173 ESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +S I V + ++ + S K Sbjct: 1334 TVKTRETKESTGIGLSIVKKIVEIQGGNIILASQEGQGSTFSFTWPK 1380 >gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1262 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 27/232 (11%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSA 60 S L + S + H++ +P+ ++ +L LL E I+ E +++ Sbjct: 1027 ESEKLARMKDEFISVVSHELRTPLTSLQAALSLLYEKIIDPTSDEGQETIEIATEGVNRL 1086 Query: 61 IIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKID 110 + + L +G + + VI + K + Sbjct: 1087 VRLVNDILDLERLSSGKIRLEKQFCQTDGVILAALDQIKEIAKEAQIIIKSEYENFFFWC 1146 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFPEKFTQI 167 S +IL+NL A P+ + + VQ + FS+ G + + Sbjct: 1147 DSDRLVQILINLLNNAIKFSPQNSIIELKVQQQNSPMPSLLFSISDQGRGIPSDKLESIF 1206 Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + + Sbjct: 1207 DRFGQVDASDSRAKGGTGLGLAICRSIVTQHGGEIWVNSKLGQGSTFYFTIP 1258 >gi|189463855|ref|ZP_03012640.1| hypothetical protein BACINT_00188 [Bacteroides intestinalis DSM 17393] gi|189438805|gb|EDV07790.1| hypothetical protein BACINT_00188 [Bacteroides intestinalis DSM 17393] Length = 1347 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 59/231 (25%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + K +S M + + I H++ +P+ I L+ L ++ + Sbjct: 820 LDKEKQEEISQMKIRFYV--NISHELRTPLTLIVAPLQELINHINGHWEQAQLQYIQRNT 877 Query: 61 IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L + Y + + + ++ Sbjct: 878 NRLLHLVNQLMDYRRAELGIFELRPTYSNAYKRVLNCFINYESLAKRKDIDYNFYTELQD 937 Query: 115 RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + A G +T+ + N I + G EK Sbjct: 938 EKMLFDENYLDLIVNNLLSNAFKYTEVGESITVKLCKEDNNLILQVVDTGIGI-PKEKQK 996 Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + I V L + R++ + S L Sbjct: 997 KIFERFYQVENGCEGSGIGLSLVQRLVELHHGRIVLQSEVGKGSTFSIYLP 1047 >gi|86751212|ref|YP_487708.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86574240|gb|ABD08797.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 557 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 61/235 (25%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56 + I L + + H++ +P+ +I SL LL ++ + + Sbjct: 187 REISARKHMERLRDEFVATVSHELRTPLTSISGSLGLLVGQWVGIFPEPAARLVAIAYKN 246 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------ 104 S + + + I + R Sbjct: 247 SQRLVRLINDILDIEKLGDGRVVFNLCRVDVHAIVEQAIESNRGFAEGYGVNVGLTTASR 306 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 + + A+++ NL A + P G V ++V+ S++ G+ Sbjct: 307 SSDVNADPDRLAQVITNLLSNAIKASPPGRDVLVAVEPHDAFVRISVRDQGDGIPATFRL 366 Query: 162 EKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + V + R+ E V L Sbjct: 367 HIFEKFAQADATDARQKGGTGLGLSIVKQIVERLNGRVSFEDAAGGGTVFCVDLP 421 >gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus] Length = 359 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 28/238 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 +N+ + +L + + H++ +P+ + ELL + E + A Sbjct: 8 RNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPLNGEQSGYADSIRVCADT 67 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTG 106 L + Y+ + + ++ + + IA +++++ Sbjct: 68 LLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELDPEM 127 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +IL+NL ++ PR V + S+ G E Sbjct: 128 LVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEWADVTCSVIDTGIGI-PDE 186 Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 + ++ + + + L + + ++ L Sbjct: 187 QKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTFSL 244 >gi|302338211|ref|YP_003803417.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635396|gb|ADK80823.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 603 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/230 (9%), Positives = 59/230 (25%), Gaps = 26/230 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + + H++ +PI +I +E L D+ + +++ + + Sbjct: 371 QLERMRKEFVANVSHELKTPITSIKGFVETLLDGAIDDRENAFRFLTIVQNQTTRLGNII 430 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQVSWTGEKIDL 111 + + + + + D V+ E + Sbjct: 431 DDLLTLSRLEQNDEESGISMEKIPLCHPVNEAISICQGRADEKSIDIHVECDRELEILGN 490 Query: 112 SRERAKILLNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++NL A P G V ++ + ++ NG + +I + Sbjct: 491 GHLIEQAVVNLVDNAVKYCPEGSVVLVRCEREEDRRILLVVQDNGPGIPEAD-QERIFER 549 Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E Sbjct: 550 FYRVEKARSRDMGGTGLGLAIVKHIMLLHGGTVALESSRGEGASFLLRFP 599 >gi|258621420|ref|ZP_05716454.1| sensor histidine kinase [Vibrio mimicus VM573] gi|258586808|gb|EEW11523.1| sensor histidine kinase [Vibrio mimicus VM573] Length = 733 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 58/237 (24%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + +S + + + H+I +P+ + + ++L + + + Q + S Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTAKQRQHLTSLYESG 399 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 + + Y+ +G I+ + ++ Sbjct: 400 EHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHSEIID 459 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161 T +I+ NL A +G D + ++ +G Sbjct: 460 TRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIDDEYFLTIKVQDSGIGI-PQ 518 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + +I + V +A + + Sbjct: 519 DALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEVR 575 >gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1019 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/255 (10%), Positives = 61/255 (23%), Gaps = 43/255 (16%) Query: 2 AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEV 49 K L + A L + + H++ +P+ I ++L + Sbjct: 609 RKADELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGILGYAQILMFDESLSAEQKSS 668 Query: 50 MQLIRLSSMSAIIRLKF-------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + +I + + + I + E + + Sbjct: 669 LSIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFHYFILDIIQTCQIKATEKQLLL 728 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSK 144 + + + + ++LLNL A + S + Sbjct: 729 NYDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSVVLDVQLSQPPQTPPKSPKHHW 788 Query: 145 NENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLP 199 + F+++ G PE +I S + L L Sbjct: 789 HRVHFAVRDTGCGI-DPENHQKIFLPFEQIGDRRSRPHGTGLGLAISQKLVAMMGGELQL 847 Query: 200 EIIDDHNVVLSALLE 214 + S LE Sbjct: 848 TSYPNKGSCFSFDLE 862 >gi|160945543|ref|ZP_02092769.1| hypothetical protein FAEPRAM212_03072 [Faecalibacterium prausnitzii M21/2] gi|158443274|gb|EDP20279.1| hypothetical protein FAEPRAM212_03072 [Faecalibacterium prausnitzii M21/2] Length = 627 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54 + + +L A L I HD+ +P+ +I + E LD + Sbjct: 386 KEQAALQARNEELRANLLRTISHDLRTPLTSISGNASNLLSNGETLDTETRNKICTDIFD 445 Query: 55 LSSMS---------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + +D +I + Sbjct: 446 DAQWLIGLVENLLSITRIEDGRMNLQISPQLMDEMIEEALHHVNRKSCEHTITTQYGDEI 505 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +R ++++NL A P G + IS ++ + + NG K Sbjct: 506 LLVNVDARLIMQVVVNLVDNAIKYTPVGSVIQISAYRKDHQVVVDVADNGPGIPDRAKAQ 565 Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + S + + + L + V S L Sbjct: 566 VFEMFYTGQSRIADSHRSLGLGLPLCRAILTAHGGTLTLRDNIPNGSVFSFALP 619 >gi|126654761|ref|ZP_01726295.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] gi|126623496|gb|EAZ94200.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] Length = 364 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 58/215 (26%), Gaps = 20/215 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L S + H++ +P+ + LE L G D + L++ + + L+ Sbjct: 148 LISDMTHELRTPLTVMRGYLEELANGSIEGNPDLYLNLVKETRRLERLIHDLQELSKAEA 207 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLF 123 G + + ++ +++ + + +IL+NL Sbjct: 208 GYLSITLHPINMIPLLKSLVERFSDQILEDGPTIQLNCPQELPQVLADSDRIEQILVNLM 267 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178 A G + + + G + + F + + + Sbjct: 268 GNAIRYTEIGTITIKAWSTK-KQVWIEIIDTGIGIKSEDLPYVFERFWRADKSRSRYSGG 326 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I L ++ E V L Sbjct: 327 TGIGLAITRRLVELQGGKIEVESEIGKGSVFRFSL 361 >gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 649 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 71/237 (29%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 A+ L+ + + + H++ +P+ AI ++LL + +++I ++ Sbjct: 266 AQEEAERLNHVK--DEFLATLSHELRTPLNAIIGWMQLLRSGTLNEDQFNTGLEVIERNA 323 Query: 58 MSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ + + L I+ V A + + + + + Sbjct: 324 NVQTQLIEDLLDVSRIICGTLKLEAQPINVISVILSSIDTVSPTAKAKNININLQLSSQT 383 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA------ 158 I+++ ++ ++ + + ++ + + G Sbjct: 384 IEINGDKERLQQVFWNLLINAVKFTPIDGSITIEGGEENNQMAFIRITDTGKGISGDVLP 443 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 ++F Q + T + V + + ++ E D + L Sbjct: 444 HIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEMHGGSVMAESEGIDKGSTFTVELP 500 >gi|118468443|ref|YP_890098.1| sensor histidine kinase PhoR [Mycobacterium smegmatis str. MC2 155] gi|118169730|gb|ABK70626.1| sensor histidine kinase PhoR [Mycobacterium smegmatis str. MC2 155] Length = 475 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 18/211 (8%) Query: 23 CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ +P+ I EL + D +M I S + ++ + L Sbjct: 257 SHELRTPLTTIRGFAELYRQGAARDIEMLMGRIESESRRMGLLVEDLLLLARLDAQRPLE 316 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLFMVAHAS 129 D+ + D + + + + +++ NL A Sbjct: 317 RRRVDLLALATDAVHDAQSIAPKRRVKMEVFDGPGTPEVLGDEARLRQVIGNLVANAVQH 376 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFY 184 P +T+ V + + + G + F + + + Sbjct: 377 TPETAGITVRVGTDGDNAVLEVCDEGPGMSQEDARRVFERFYRADTSRTRASGGTGLGLS 436 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L + + + + L + Sbjct: 437 IVDSLVYAHGGTVKVTTALGKGSRFTVSLPR 467 >gi|114798077|ref|YP_760121.1| sensor histidine kinase ChvG [Hyphomonas neptunium ATCC 15444] gi|114738251|gb|ABI76376.1| sensor histidine kinase ChvG [Hyphomonas neptunium ATCC 15444] Length = 544 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 71/242 (29%), Gaps = 32/242 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 M + + + + + + + H++ +P+ +I +++E L+ + + +I Sbjct: 305 MTEALIERIEANE---QFAADVAHELKNPLTSIRSAVETLERVQDPDAAARLRAVIASDV 361 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108 + + + ++D + D+ E + V V++T Sbjct: 362 KRLDRLITDISNASRLEAEMTRLPSETIDIARFVRDVVHTYEGLSDNAQAVHVAFTDATL 421 Query: 109 ------IDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLA 158 ++L NL A + ++ + + ++ G Sbjct: 422 GARLLVRGREGPLGQVLRNLVDNARSFSRPGSKVEVRLEQTNDGPRTIARILVEDAGPGI 481 Query: 159 RFPEKFTQIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +K I + + V + ++ ++ E + + Sbjct: 482 -PADKVETIFNRFYTDRPKGTAFGNNSGLGLSIVKQIVATHRGQVWAENRPEGGARFTVD 540 Query: 213 LE 214 L Sbjct: 541 LP 542 >gi|295097697|emb|CBK86787.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 772 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 283 STISHELRTPLNGIVGLSRILLDTELTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 342 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + ++ + + + +IL NL Sbjct: 343 KVQLDNQPVDFTGFLADLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLI 402 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E+ Sbjct: 403 SNAVKFTQKGQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPAT 462 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + Sbjct: 463 GTGIGLAVSKRLAKSMGGDITVASQPGKGSTFTLT 497 >gi|284048185|ref|YP_003398524.1| integral membrane sensor signal transduction histidine kinase [Acidaminococcus fermentans DSM 20731] gi|283952406|gb|ADB47209.1| integral membrane sensor signal transduction histidine kinase [Acidaminococcus fermentans DSM 20731] Length = 549 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 16/224 (7%), Positives = 56/224 (25%), Gaps = 21/224 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +PI I E L + + +LI + + Sbjct: 286 EKMRRDFVANVSHELRTPITIIQGYNEALSDGTITDPEDVKKYRKLINDETRRLERLINE 345 Query: 67 MRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + + ++ + + V + Sbjct: 346 LLDISRLQRGEGEEMEPIPLGKVVESVVNMLEGRAKKRDIRLEQYVDDSLLVYGNGDRLY 405 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK---FTQIVDGN- 171 ++++ L A P + V ++ + + ++ G + + + + Sbjct: 406 QLVMILGDNAMKYSPDSSVIRFQVMENGRKGTVLTVADQGFGIPEEDIPYIWERFYKADK 465 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + +K ++ + Sbjct: 466 SHSRHIPGTGLGLAIGKEIIRMHKAKVQVQSKVGKGTAFVITFP 509 >gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 863 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + L + + H+I +P+ A+ ELL+ ++ + + +RL + Sbjct: 345 LQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETTNLDADQQEFLRLIRTAG 404 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104 + ++ G + I+ + A+ + Sbjct: 405 KNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAMCQGAATDKGLQLIVEVDPNL 464 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLAR 159 + +ILLNL A +G + + F ++ G Sbjct: 465 PTVFMGDPTRLTQILLNLINNAIKFTKQGSVTLLIEQGERKTSASIPVRFIVQDTGIGMA 524 Query: 160 FPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + V L K + E + + Sbjct: 525 REALPTIFERFQQADKFTTRYYGGTGLGLNIVKSLTELQKGSVSVESTLGKGSRFTVEIP 584 >gi|312113934|ref|YP_004011530.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311219063|gb|ADP70431.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 481 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 18/203 (8%), Positives = 65/203 (32%), Gaps = 7/203 (3%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + + + HD+ +PI ++ E +++ + +++Q + L + + Sbjct: 262 MLAALSHDLRTPITSLRLRAEFIEDDEMRRKILQTLAEMFQMTEAALAYAKGGELEELEE 321 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137 L+ +G + + + L + L + ++ G Sbjct: 322 SRLVDVGALVSSVCADLEDMGAPVECSDTPSFSLHCRAFALKRALRNIVVNAVAYGTHAR 381 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH 191 ++ Q + NE + ++ +G + ++ + + +A Sbjct: 382 VTTQLTGNEALIVVEDDGPGI-PEDDMEKVFSPFVRLENSRNADTGGMGLGLAIARGIAR 440 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + ++ L Sbjct: 441 FHGGDVILKNRPEGGLRVTIALP 463 >gi|297569334|ref|YP_003690678.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925249|gb|ADH86059.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 520 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 64/242 (26%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEV------MQL 52 + ++ M+ + L + HD + + + EL L + ++ Sbjct: 136 LLQSQLNQAQKMEAIGALAGGVAHDFNNILTVVKGYAELGLLRLQESQPGHEEFAGILEA 195 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + S+ L F R +D + + +++ I + + + + Sbjct: 196 AQRSTDLTRQLLAFARKQTANPIVLDLNETVTGMLKMLRRLIGEEIELDWQPAADLWPVK 255 Query: 113 RERAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKIN 154 + ++ L + + L T + + ++ N Sbjct: 256 MDPGQVDQVLANLCINARDAISYEGRISIATANVVLNDQYCTTHASCLPGEYVLLTVSDN 315 Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E T I + + + V + +N+ + Sbjct: 316 GAGM-DRETQTHIFEPFFTTKETGKGTGLGLATVYGIIKQNQGFINFYSEPGQGSTFRIY 374 Query: 213 LE 214 L Sbjct: 375 LP 376 >gi|257879040|ref|ZP_05658693.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257881664|ref|ZP_05661317.1| histidine kinase [Enterococcus faecium 1,231,502] gi|257890892|ref|ZP_05670545.1| histidine kinase [Enterococcus faecium 1,231,410] gi|258615326|ref|ZP_05713096.1| sensor histidine kinase [Enterococcus faecium DO] gi|293562841|ref|ZP_06677313.1| two component sensor kinase [Enterococcus faecium E1162] gi|294623350|ref|ZP_06702210.1| two component sensor kinase [Enterococcus faecium U0317] gi|314950223|ref|ZP_07853507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0082] gi|257813268|gb|EEV42026.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257817322|gb|EEV44650.1| histidine kinase [Enterococcus faecium 1,231,502] gi|257827252|gb|EEV53878.1| histidine kinase [Enterococcus faecium 1,231,410] gi|291597244|gb|EFF28435.1| two component sensor kinase [Enterococcus faecium U0317] gi|291605165|gb|EFF34627.1| two component sensor kinase [Enterococcus faecium E1162] gi|313643450|gb|EFS08030.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0082] Length = 347 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 21/236 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51 + K+ + ++ L S + H+ +P+ I ++LL + + + + Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWT 105 +I + + + ++L + V +++++ Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFFQPKWEKEQLELDIE 230 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 ++ + ++ LN+ A G++ I + ++ E + + +G Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQINGQIHIKLFETATEIVLEVTDSGVGMNEET 290 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ I + + V + + R+ I+ L K Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 346 >gi|213022585|ref|ZP_03337032.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 320 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 A L+S ALL + + HD+ +P+ + E+L + S + Sbjct: 79 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 137 Query: 59 SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 I + ++ + + + + +S + Sbjct: 138 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 197 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++L+NL A + I N + NG + Sbjct: 198 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDNRLQLDVWDNGPGIPAGQEQ 257 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES + + + + L L Sbjct: 258 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 310 >gi|195940455|ref|ZP_03085837.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4024] Length = 777 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + ++ + + + +IL NL Sbjct: 348 KVQLDNQPVDFTGFLADLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E+ Sbjct: 408 SNAVKFTQKGQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + Sbjct: 468 GTGIGLAVSKRLAKSMGGDITVASQPGKGSTFTLT 502 >gi|169350203|ref|ZP_02867141.1| hypothetical protein CLOSPI_00947 [Clostridium spiroforme DSM 1552] gi|169292986|gb|EDS75119.1| hypothetical protein CLOSPI_00947 [Clostridium spiroforme DSM 1552] Length = 464 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 63/233 (27%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56 MA+ + + S I H+ +P+ AI +L + + + +I Sbjct: 217 MAQQLA---KQEETRQKFISDISHEFQTPLTAIQGFANILKDEDLPKSQRQKYADIILFH 273 Query: 57 SMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S K M ++ + E + Sbjct: 274 SKRLSTLSKNMLQLTLLEREEVELEYTTFSIVEQLSRVISTQENQAILKDIEIVFEKPRK 333 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 + ++ +N+ A GG +TI V+ + E S++ G Sbjct: 334 DITVNGDEQRLEQVWINIISNAIKYTDNGGLITIKVKKTSKEVEVSIEDTGRGMSKEVIS 393 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + +++ + + V + + + D L Sbjct: 394 HIFERFYREDKARSVEGNGLGLSIVKSIIDLHHGNIDVISQVDVGSTFIIKLP 446 >gi|152972282|ref|YP_001337428.1| osmolarity sensor protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896871|ref|YP_002921616.1| osmolarity sensor protein [Klebsiella pneumoniae NTUH-K2044] gi|262045240|ref|ZP_06018266.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|150957131|gb|ABR79161.1| osmolarity sensor protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549198|dbj|BAH65549.1| osmolarity sensor protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037450|gb|EEW38695.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 451 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + L N+ + A Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 G + +S + F ++ +G + F V G+ + + V + Sbjct: 353 NGWIKVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + RL + +++ A L Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437 >gi|332361249|gb|EGJ39053.1| sensor histidine kinase [Streptococcus sanguinis SK1056] Length = 344 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + S ++ +++ HDI +PI +I ++E + + + + I Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165 Query: 57 SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103 + ++ + + LI + Q++ + D +QVS Sbjct: 166 TERLNKLVEELDILTLNAQPQIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 KI ++ ++ILLNL A G K+ I Q ++ S+K G Sbjct: 226 PESAKIKSHYDKLSRILLNLLNNAFKYSDPGTKIEIVAQLTEQILTISVKDEGRGISPEN 285 Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F ++ H + LAH+ + E + L Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVESQYGLGSTFTFTL 341 >gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 616 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 60/239 (25%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLI 53 + + + L + + H++ +P+ I E L + + V + Sbjct: 224 LEEANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQRAVQHVF 283 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQV 102 + + LA G VD + + + + Sbjct: 284 DNGQHLLQLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQQFTYTAC 343 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARF 160 +IL+NL A PRGG + I + E F + +G Sbjct: 344 EAGLSIEADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIWDHGIGIAA 403 Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V L + R+ E L Sbjct: 404 NQQNMLFQPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGSRFRVFLP 462 >gi|289548061|ref|YP_003473049.1| histidine kinase [Thermocrinis albus DSM 14484] gi|289181678|gb|ADC88922.1| histidine kinase [Thermocrinis albus DSM 14484] Length = 322 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 47/221 (21%), Gaps = 16/221 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 L L + H++ +P+ A+ LE + + + M + Sbjct: 99 QYEKLKRDLVENVAHELKTPLSAVTLLLERAAKECPSSFAIHRALHRLQQMEKLIDDMLI 158 Query: 70 -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + L + + + V+ V + + + I Sbjct: 159 LARLESGVERLHLTEIHLREFLQDVYYQLREEFEKAKVNFENLVDESFVLVADENKLYLI 218 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173 L NL A GG V + + + G Sbjct: 219 LRNLLENAVRYNREGGSVRVRGWKEGQMAVVEVSDTGIGIPKEHIPFIFDRFYRVDKGRS 278 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + Sbjct: 279 RDRGGTGLGLSIVRNAVRLHGGSIELQSEVGKGSTFRIYIP 319 >gi|226225613|ref|YP_002759719.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226088804|dbj|BAH37249.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 806 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 65/238 (27%), Gaps = 26/238 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57 ++ + M+ + L + HD + + AI S +L + + I+ S+ Sbjct: 419 RQDRMRHAERMESLGRLAGGVAHDFNNLLTAIVGSADLALDELPIDHPARAELATIKSSA 478 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112 + + + ++ L I Q + V+ Sbjct: 479 SRSGSLTRQLLDFSRRAPLSNAPQRLDAIVQGAAALLVRVMPASVTLDVHTASHKLVRVD 538 Query: 113 -RERAKILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNLA 158 + ++NL + + ++P+ + + + ++ G+ Sbjct: 539 AGRIEQAIMNLAVNSRDAMPKGGRLVIELDDVETTSQESPDHPPAGAWVRLTVSDTGHGM 598 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ +I + + + V + + ++ L Sbjct: 599 -TPDVRRRIFEPFFTTKGVGQGTGLGLAMVYGTVQYHGGHVHVRTAPGDGTTITIWLP 655 >gi|94263959|ref|ZP_01287761.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455631|gb|EAT05813.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 422 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 28/241 (11%) Query: 2 AKNICFNLSSMDL----VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 KN S +L L + HD+ P+ ++ ++LL+ + + + Sbjct: 173 RKNRQLEEKSAELTRSNAELEQFAYVVSHDLRQPLRMVNGYMQLLERALDDKLDDETREM 232 Query: 56 SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 L + + + L E V E ++ + + K Sbjct: 233 MGFAVGGAQRMDHMLVSLLDYSRVGRRGEPMAPLASREAVAEALHFLEPEINQTGATVKR 292 Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR 159 E ++ NL A K I V N F++ NG Sbjct: 293 SGDWPEIVASRDEFTRLWQNLIGNALKYRDPQRKPEIELSVSPEANGWRFTVADNGIGID 352 Query: 160 FPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + F ++ D I + + R+ E L Sbjct: 353 PGQ-FDRLFKVFQRLHPKDQYDGTGIGLAVCRKIVERHGGRIWVESEGVGQGSRFIFTLP 411 Query: 215 K 215 + Sbjct: 412 R 412 >gi|88604425|ref|YP_504603.1| response regulator receiver sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] gi|88189887|gb|ABD42884.1| response regulator receiver sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] Length = 391 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 75/232 (32%), Gaps = 20/232 (8%) Query: 2 AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53 + + ++ L + I HD+ +P+ I N LL+ + +L Sbjct: 159 ERTRQLQVAQRFAVIGELATMIGHDMRNPLQVITNMQYLLEMRMQKMSKEELEILHRNGI 218 Query: 54 -----------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + + R ++ + D+ I +V ++++ Sbjct: 219 PEIFDRIGTEIQYLNKIISDLQDYAREVNPEKSRINLKTFIEDLILKISPPPSVLVKIEI 278 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++++ NL + A ++ GG +T++ ++++ I S++ G E Sbjct: 279 QSGMIVLVDPVLLSRVMENLMINAIQAMDTGGTLTLTSHIAEDDIIISIRDTGPGI-SAE 337 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I D + + L + ++ L Sbjct: 338 AQSRIFDPLFTTKPKGTGLGLSVTKRLIEAHGGKITLVETSPAGTTFEVSLP 389 >gi|78213432|ref|YP_382211.1| adaptive-response sensory kinase [Synechococcus sp. CC9605] gi|78197891|gb|ABB35656.1| histidine kinase [Synechococcus sp. CC9605] Length = 411 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 68/231 (29%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54 + + + + L + H++ +P+ A +L+ + + +L Sbjct: 160 LRQENETLIDRVSAQERLLRMVAHELRTPLTAAALALQSQKLGQIDMDRFQDVITRRLEE 219 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 + ++S + + I ++ + ++ + +Q + Sbjct: 220 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIQTDIPADLPKV 279 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 R ++LLNL A GG +++++ + S+ +G E+ Sbjct: 280 FADQRRMRQVLLNLLENALKYTNDGGHISLTMLHRTSQRVEVSVCDSGPGIPETEQQRIF 339 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + + + ++ + + Sbjct: 340 LDRVRLPQTSDQTTGYGVGLSVCRRIVEVHGGKIWVVSDPGEGACFTFTVP 390 >gi|115522289|ref|YP_779200.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516236|gb|ABJ04220.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 911 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 71/243 (29%), Gaps = 30/243 (12%) Query: 1 MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--- 56 M ++ + L + HD + + I +E+L + + ++ + L Sbjct: 522 METERQLREAQNLQTIGQLTGGVAHDFNNILTVITGGVEILADGVTDRPALKDVALMVDQ 581 Query: 57 -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L F R SVD + DI +++ + ++V + + Sbjct: 582 AVSRGRELTNQLLSFARKQPLRPRSVDVNALVLDIAKLLRSTLGEQIEIEVEPASDLLPA 641 Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153 + +++ L A ++P GGK S + + ++ Sbjct: 642 LADPSQLGSALINLAINARDAMPGGGKLLLETGIVDLDAAYAAQHSEVVAGCYVMLAVSD 701 Query: 154 NGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G ++ + + + + V ++ + + H + Sbjct: 702 TGTGIPAA-IRDRVFEPFFTTKDVGEGTGLGLSMVYGFVKQSGGHIEVYSEEGHGTTIRL 760 Query: 212 LLE 214 L Sbjct: 761 YLP 763 >gi|119385688|ref|YP_916743.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] gi|119376283|gb|ABL71047.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] Length = 597 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 29/240 (12%) Query: 1 MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE---- 46 M K + S L AL + + + H++ P+ A+ L LL E Sbjct: 346 MQKELRVAEQTVQQSSKLAALGEMSAGVSHELNQPLAAMKTYLAGARLLLQRGRAEEAQS 405 Query: 47 --DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRV 100 + L+ + R VD L ++E +R Sbjct: 406 SFQRIDDLVERMGAITRQLKSYARKGGEAFEPVDLRAALSSALVMMEPQLRSRTIRLQRT 465 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLAR 159 + +I++NL A ++ S + S++ NG Sbjct: 466 IPRYPVMVYCDRIRLEQIIINLLRNAVDAIKGVRDPAIEITVSSGSHAFLSVRDNGPGVS 525 Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214 E + + + + + +A + RL V L Sbjct: 526 DLEN---LFEPFFTTKKPGEGTGLGLAISSGIAADFGGRLTAHNALDEGGRGAVFELELP 582 >gi|269965885|ref|ZP_06179978.1| Osmolarity sensor protein envZ [Vibrio alginolyticus 40B] gi|269829438|gb|EEZ83679.1| Osmolarity sensor protein envZ [Vibrio alginolyticus 40B] Length = 430 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 69/209 (33%), Gaps = 6/209 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + ALL + I HD+ +P+ I + E++ ++ + + ++ + + +++ Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHA 128 + + + E V+ ++ + + + NL + A Sbjct: 280 VNQESFEAVDISTIASDVASSEGGYEVEIETDLNLNLPPAKGSAIAIKRAISNLVVNALR 339 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 K++ V K S++ NG + F G+ + + Sbjct: 340 YGNGWVKISTGVTADKQLVWISVEDNGPGIEHSQIARLFEPFTRGDTARGSEGTGLGLAI 399 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ ++ + ++ L Sbjct: 400 VKRIISQHSGSVVMRNRSEGGLIAQISLP 428 >gi|197124763|ref|YP_002136714.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] gi|196174612|gb|ACG75585.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] Length = 363 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 57/220 (25%), Gaps = 24/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAF 71 L + + H+I +P+ + S ELL ++ L R A Sbjct: 141 LAAGLAHEIKNPLAGLQGSAELLAREAEGPAREYAAVIAREAKRVDGLVRELLDLARPAA 200 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMV-- 125 G V LGD + D+ V + + +++LNL Sbjct: 201 LQQGPVALHDVLGDALVLARGIPGADRIAFVERYDPSLPPVLGDEEKLMQVVLNLVRNAV 260 Query: 126 -----------AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + ++ ++ ++ S++ G ++ S Sbjct: 261 DAVAATAAPRVTIETSVSPLRLRVASGRTRPLARISIQDEGPGIPEAML-QRLFTPFATS 319 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ + L Sbjct: 320 KPHGTGLGLAISRRIVEAHGGRIEVRNRAGGGAEANVYLP 359 >gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 875 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 + +N +S L S + +++ +P+ I ++L E + ++ + + Sbjct: 618 LERNEALE-ASDRLKTAFLSHVSYELRTPLTTIIGFTDMLAEPAFGALNNKQREYLDHIK 676 Query: 58 MSAIIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG- 106 S+ + L + + L + ++ V + Sbjct: 677 TSSEVLLNIINDIIDLAALDAGALDLKLAPVEIESLIEAAELGVRERLSRANVNLDVHIA 736 Query: 107 ----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++L NL A P G +T++ + KN S++ G E Sbjct: 737 SGAGTVMADANRLIQVLYNLLSNAIGFSPEDGTITLACRREKNGVAISVQDTGLGIPEEE 796 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + S + V + +K R+ ++ L Sbjct: 797 QATVFDRFESRSKGSRHRGAGLGLTLVKSIVELHKGRIDLRSTPGAGTTVTVFLP 851 >gi|238751146|ref|ZP_04612641.1| Osmolarity sensor protein envZ [Yersinia rohdei ATCC 43380] gi|238710624|gb|EEQ02847.1| Osmolarity sensor protein envZ [Yersinia rohdei ATCC 43380] Length = 434 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 + + + L+A LL + + HD+ +P+ I + E++ E E + Sbjct: 198 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 257 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ T S D LG++ + V + Sbjct: 258 CNAIIEQFIDYLRTGQEMPTESSDLNAVLGEVIAAESGYERVIETDLCDGEVMVDIHPLS 317 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN 171 + L N+ + A KV+ + F ++ +G + + F V G+ Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 375 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + + A + Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHAGSLEIGASERGGLRIRAYIP 418 >gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1104 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 58/224 (25%), Gaps = 25/224 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74 + + + H+I +P+ + LL + +++ + SA L + ++ Sbjct: 456 SQFVANMSHEIRTPMNGVIGMTGLLLDTDLDERQREFAETIQSSAANLLTVINDILDFSK 515 Query: 75 -------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKIL 119 +L + D+ + ++ V + +++ Sbjct: 516 IEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFVCMVDPDVPSLLVGDPGRLRQLI 575 Query: 120 LNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI-----VDG 170 +N+ A G V V + K F++ G ++ +D Sbjct: 576 INICNNAIKFTREGEVVVRVVGEEIKEDKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDA 635 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + L Sbjct: 636 STTREYGGTGLGLSICKRLVQLMNGEIGVSSRPGEGATFWFSLP 679 >gi|158338978|ref|YP_001520155.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158309219|gb|ABW30836.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] Length = 811 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 53/231 (22%), Gaps = 22/231 (9%) Query: 4 NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54 N S+ +L A + S HD+ P+ I + +LL + + + + Sbjct: 584 NSELIRSNQELGHFAYVAS---HDLQEPLRKIGSFTDLLADRYQGQLDETADRYIRYITD 640 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + + + + + + Sbjct: 641 GAMRMQGLIDDLLNYSRVGRAELKVQPTALSSILEKVKSDLEKVIEKRQVEIIIDSLPTV 700 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPE---KF 164 ++ NL A + ++ NG F Sbjct: 701 AVDPVLMGQVFQNLISNAIKYCQADRPRIYIRATQDQKFWTISVQDNGIGINPQFTDRIF 760 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I L + ++ + + S L K Sbjct: 761 VIFQRLHHREEYSGTGIGLAICKKLVERHGGQIWVDSEEGKGANFSFTLPK 811 >gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1041 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 69/226 (30%), Gaps = 28/226 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 + + + H+I +P+ AI L ++ E + ++ + +I + ++ Sbjct: 449 IFLANMSHEIRTPMNAILGFLAIVLESSSLPADLRKHIVTAHGSAESLLVIINDVLDVSK 508 Query: 72 GYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKIL 119 +G ++ + + + + + + + + + S +++ Sbjct: 509 FDSGRMELVFSVFHLPRTIGKALQTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQVI 568 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV----- 172 +NL A G S + +F++ G PE+ +I + Sbjct: 569 INLVANAIKFTEEGSITIEVKGTSGEDDLLLFTVVDTGIGI-RPEQVARIFEPFTQADDS 627 Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LEK 215 I + + R+ E + + L + Sbjct: 628 STRNIGGTGLGLAICKEIVDLMGGRIWVESEKGKGSSFNFMVPLPR 673 >gi|320103763|ref|YP_004179354.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319751045|gb|ADV62805.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 460 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 19/230 (8%), Positives = 54/230 (23%), Gaps = 26/230 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 + + + H++ +P+ +I + L++ I + I + + + Sbjct: 197 ERMRQDFVANVSHELKTPLASIRAYADSLLDWALEDPEITRRFVSQIDEQAERLDVLIHD 256 Query: 67 M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + ++ +++ ++ + Sbjct: 257 LLSLARIESGQDLITFRPLALAPLVERRVESFRDRAQSRNVSLSFVTELPPQFTILADEE 316 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE---KFTQI 167 +IL NL A V + NG E F + Sbjct: 317 ALRQILDNLIDNAIKYSSDVDPWVKVVCRGDGEAGMVAIDVIDNGLGIASEEQTRIFERF 376 Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V L + + + + L + Sbjct: 377 YRVDKARSRERGGTGLGLAIVKHLVQALRGEIELQSRVGAGSRFTVRLPR 426 >gi|260463215|ref|ZP_05811417.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031065|gb|EEW32339.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 594 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 78/248 (31%), Gaps = 38/248 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + +++ + + H++ +P+ ++ +++E L +M++I+ Sbjct: 348 MTNALYARIEAIES---FAADVSHELKNPLTSLRSAVETLPLAKNDNSRSRLMEIIQHDV 404 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 + + A G+VD + D+ V + K V++ + Sbjct: 405 RRLDRLITDISDASRLDAELAREDAGTVDLKKFITDLVAVSREATRNKKAVEIEFKVAKL 464 Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLA 158 + +++ NL A + +P G +++S+ + NI ++ NG Sbjct: 465 PQGVKGYFVVGHDLRIGQVITNLIENARSFVPEDHGHISLSLARAGKFNILTIDDNGPGI 524 Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HN 206 + +I + + + + L E I Sbjct: 525 -RADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGTKPGEIKG 583 Query: 207 VVLSALLE 214 L Sbjct: 584 ARFVVTLP 591 >gi|229018449|ref|ZP_04175311.1| hypothetical protein bcere0030_29750 [Bacillus cereus AH1273] gi|229024705|ref|ZP_04181144.1| hypothetical protein bcere0029_30160 [Bacillus cereus AH1272] gi|228736548|gb|EEL87104.1| hypothetical protein bcere0029_30160 [Bacillus cereus AH1272] gi|228742801|gb|EEL92939.1| hypothetical protein bcere0030_29750 [Bacillus cereus AH1273] Length = 436 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNTPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S + F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARVDQGEHSTFQFECINMSELTEIVVEELSLMVQEASIDITTNIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGIVNMQLFRDETNIIGKVSDNGIGISEQHIA 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|229116991|ref|ZP_04246373.1| hypothetical protein bcere0017_32730 [Bacillus cereus Rock1-3] gi|228666395|gb|EEL21855.1| hypothetical protein bcere0017_32730 [Bacillus cereus Rock1-3] Length = 417 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 12/223 (5%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58 K + + L + I H+I +P+ +H +LL+E +D+ ++++ + Sbjct: 195 KEKLQRAEKFYIASELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 254 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111 + ++ I + I +++ VD + + + Sbjct: 255 QIQSTINNYLSLTKPKNTLKEKIDINYILNQVKETISPLALSYKVDIKQNSTDSFYINGD 314 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + L N+ ++ GG + I++Q K I + +G + +I Sbjct: 315 PEKFRLCLNNIIQNGIEAMKNGGVLQINIQKIKGNIIVDIIDSGVGMSSQQIK-RIALPF 373 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +T + + E + E S + Sbjct: 374 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 416 >gi|218780781|ref|YP_002432099.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762165|gb|ACL04631.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 808 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 23/233 (9%) Query: 5 ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------- 54 + S L A L + + H+I SP+ AI L + +D + Sbjct: 562 ESQLIRSERLAATGQLAASVAHEINSPLQAITMMLGAIKREYADDRELCSQIDLLKGAFL 621 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL-- 111 + L R + + + ++ + V + D+ Sbjct: 622 NIRDTVKNLLDLNRPGKEKRQKTNINRIIEGSVGLGASYLKKSRVEVSLDLDESIPDILA 681 Query: 112 -SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---------FSLKINGNLARFP 161 ++ ++++LNL A ++ + +G Sbjct: 682 SPQQMSQVVLNLVNNAVEAISANADDYGPGLKGGIVVKTQRRNSSLVMQVMDDGPGIAPE 741 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + + L Sbjct: 742 DLNKVFDPFYTRKKKMGMGVGLSICLGIIEEHRGSISVANNPEGGAIFTITLP 794 >gi|219851326|ref|YP_002465758.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219545585|gb|ACL16035.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 929 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 25/231 (10%) Query: 5 ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55 S+ +L A + S HD+ P+ +I + +LLD + ++ + ++ Sbjct: 701 EKLMASNEELQRYAYVAS---HDLQEPLRSIVSFSQLLDRRYRGKLDKDADEYIKFIVDG 757 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + ++++ T + I + + RV V + Sbjct: 758 GVRMQALIKDLLQVSRIETQAQPLAPTDANAVVADSIRSLKTPIHDNNARVTVDPLPIVM 817 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQI 167 + +I NL A I+V + N FS++ NG E F +I Sbjct: 818 ADPSQLEQIFTNLIGNAIKYHRPEMPPAITVSAERHGNWWEFSVRDNGIGI-KAEFFDRI 876 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I V + + R+ E L Sbjct: 877 FEMFRRLHTIDEYEGTGIGLAIVKKIVERHGGRIRIESELGEGSTFFFTLP 927 >gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1065 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 70/236 (29%), Gaps = 25/236 (10%) Query: 3 KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 + + L ++ L + H++ +P+ I E + + + + + +I Sbjct: 416 ETLSKRLLALDKLKDEFLANTSHELKTPLNGIIGIAESMFDGIGGKLNQEQRQNLGMIVS 475 Query: 56 SSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113 S + + +D + D+ Q+ + + + + + V+ + Sbjct: 476 SGKRLSSLVDDILDFSKMKNRDLDLDLKAIDLHQICDFVLVISRPLYVTKNLTVRNNVPI 535 Query: 114 ----------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +IL N+ A + G++ +S + + + S++ G + Sbjct: 536 DFPPILGDEARLQQILFNIIGNAIKFTEK-GRIDVSAEIIEKMAVISIRDTGIGIPKDKF 594 Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + L + + E + S L Sbjct: 595 GDIFRSFEQVDASTTRKFGGTGLGLAISKRLVELHGGNIWVESTPAEGSMFSFSLP 650 >gi|71734748|ref|YP_273029.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555301|gb|AAZ34512.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. phaseolicola 1448A] Length = 530 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 19/228 (8%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 I + L AL L + I H+I +P+GA+ ++ +LL + + +L ++ Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355 Query: 60 AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + R +D L A ++ + V + + Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSTAPNQSIHVDISPGTLTTR 415 Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ + R + + + I ++ +G Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + + + Y L N+ L L Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522 >gi|33240571|ref|NP_875513.1| adaptive-response sensory kinase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|54036392|sp|Q7BWI3|SASA_PROMA RecName: Full=Adaptive-response sensory-kinase sasA gi|6469285|emb|CAB61760.1| putative His-kinase [Prochlorococcus marinus] gi|33238099|gb|AAQ00166.1| Signal transduction histidine kinase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 381 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 63/231 (27%), Gaps = 17/231 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--------LLDEVGIEDEVMQL 52 + + + ++ L + H++ +P+ A +L+ L+ + ++ Sbjct: 134 LRQENETLSNQIESQERLLRMVAHELRTPLSAAKLALQSQALGQIDLIKLQEVVKRRLEE 193 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDS-LIGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108 I S + A + I I ++ + +++ + Sbjct: 194 IESLSKDLLEVGTTRWEALFNPQEANLANIAAEVILELEKFWLSRGIGINTDIPADLPNV 253 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164 ++LLNL A G V I++ + S+ G E+ Sbjct: 254 FADQSRMKQVLLNLIENALKFSNDGDTVEITMLHRTNQWVQISVSDKGPGIPEEEQQRIF 313 Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + I + + ++ + Sbjct: 314 LDRVRLPQTSNETSGFGIGLSVCRRIVEVHGGKIWVVSQPGEGSCFYFTVP 364 >gi|163939372|ref|YP_001644256.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus weihenstephanensis KBAB4] gi|229132364|ref|ZP_04261218.1| hypothetical protein bcere0014_13000 [Bacillus cereus BDRD-ST196] gi|163861569|gb|ABY42628.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus weihenstephanensis KBAB4] gi|228651070|gb|EEL07051.1| hypothetical protein bcere0014_13000 [Bacillus cereus BDRD-ST196] Length = 416 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60 N + L + + I H++ +P+ + L+ L + ++ L+ A Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQDNVSPSNKELFKSLLIPELDRA 245 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109 + + L + Q + + + + Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYEFSTELDGVLVN 305 Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 E ++ LNLF A + R + IS N + NG P I Sbjct: 306 IDRHELVQVFLNLFQNAIDARGERPLSIQISSYRLDNFVRITFTDNGTGV-PPAIQEYIF 364 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + L + + Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKVTSNH-SGTTFTISIP 409 >gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 784 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------V 49 K + + L I H++ +P+ I +L+LL+ +DE Sbjct: 509 KKLLEETIKYDKLKTEFFVNIAHELRTPLNVIFGALQLLELDFKQDEIEKKEALLGVDKR 568 Query: 50 MQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 ++ ++ + + + + + V E + Sbjct: 569 IKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQNVDIVNVVENITMSVSEYMEIRGINL 628 Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 Q E ++ + +I+LNL A GG++ +++ + + + S++ G Sbjct: 629 QFDTQVESKLIACDPDKMERIMLNLLANAIKFTESGGQIKVNMYEKEENMMISIQDTGIG 688 Query: 158 ARFPEK---FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 F + + + + I V L ++ + Sbjct: 689 IPEDRINVIFERFSQVDRSLTRSHEGSGIGLSLVKSLVELQGGQITVKSKIGQGSEFIIA 748 Query: 213 LE 214 L Sbjct: 749 LP 750 >gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] Length = 1052 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 27/237 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + ++++ ++ + + H+I +P+ AI L + + + I SA Sbjct: 289 LNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQHDYISKIHNSA 348 Query: 61 IIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + L + + V + + ++ E + + ++ Sbjct: 349 SLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSMVTGQKAFEKGLELIFQIDRDV 408 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160 +I++NL A +G D K E FS++ G Sbjct: 409 PKVLYGDPLRLGQIIINLVNNAVKFTEQGEITVHVTRTPHSDQKVELKFSVQDTGIGM-S 467 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 PE+ ++ + L + E I + Sbjct: 468 PEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGSIQVESILGQGSEFTF 524 >gi|323143396|ref|ZP_08078081.1| nitrogen regulation protein NR(II) [Succinatimonas hippei YIT 12066] gi|322416801|gb|EFY07450.1| nitrogen regulation protein NR(II) [Succinatimonas hippei YIT 12066] Length = 362 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 26/225 (11%) Query: 14 LVAL-LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMR--- 68 L A L + H+I +P+G I + +LL+ G ++ ++ + + Sbjct: 129 LAARDLIRNLAHEIKNPLGGIRGAAQLLEMTFGKAADITDYTKVIIEQSDRLKTLVDNLL 188 Query: 69 --LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLF 123 + + + + R + + +L + + +N+ Sbjct: 189 GPQRPNPMSLANIHYVVEKVLSLEAMATKDKIRFEKDYDPSLPELMLDVDAMQQTFINII 248 Query: 124 MVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 A + + I+ S+ NG +I Sbjct: 249 SNAIQALTESNTERPLIKIQTRAVNGMVINGFKYPTSICVSITDNGPGIPES-IMPKIFY 307 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V S + + + + + E S +L Sbjct: 308 PMVTSRSKGNGLGLSIAQSIVERHNGTIECESHKGK-TTFSVILP 351 >gi|196228679|ref|ZP_03127545.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226960|gb|EDY21464.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 916 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 28/235 (11%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-------MS 59 M+ + L I HD+ + + I S++LL + ++++ Sbjct: 540 LRAQRMESIGTLAGGIAHDLNNVLSPIVMSVDLLKMKTDDPACLEVLETVETSARRGADM 599 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116 L F R G V L ++++++ D + +++S + ++ + Sbjct: 600 VQQVLSFARGVEGQRIIVQPKHLLKEVQKIVADAFPKNIELKLSQKPDLWNVLGDPTQLH 659 Query: 117 KILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGNLARFP 161 ++LLNL + A ++P GG++ + I ++ NG Sbjct: 660 QVLLNLCVNARDAMPEGGRITIAAENMTVDEPYASMHHDAKAGPHVIIQVQDNGTGM-PS 718 Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + +L L Sbjct: 719 ALIEKIFDPFFTTKELGKGTGLGLSTSLAIVKSHGGFILVSSEVGRGSTFKIHLP 773 >gi|254422726|ref|ZP_05036444.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196190215|gb|EDX85179.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 497 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 61/212 (28%), Gaps = 22/212 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFM-------RLAFGYT 74 H++ +PI I LEL+DE + E ++L+ + M R F Sbjct: 283 HELRTPITIIQGHLELMDEENPQECRETIKLVMDELDRMGRLVSDMLLLAKSERPNFLQL 342 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 +V+ +I ++V G + ++ +LNL A Sbjct: 343 ETVEIDAFAEEIFTKATALAQRHWILKVEGKGNVVCDRQKLTGAILNLLKNAVQHTQGTD 402 Query: 135 KVTISV-------QDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQ 182 + + + ++ F ++ G + +I + D + Sbjct: 403 TIELGCYSKKDADHPNHDQVRFWVRDTGEGISPAD-QQRIFSRFARGQNYQRRSDGSGLG 461 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + ++ L Sbjct: 462 LAITAAVAEAHGGQVTLHSKVGQGTTFWLDLP 493 >gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis EO147] Length = 749 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 +S L L + + H++ +P+ I+ +E+L Q I SA Sbjct: 382 RDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGGALQQQAIDAIDRSAR 441 Query: 62 IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + +RL V + + +D V + Sbjct: 442 SLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQAEGLDLTVDCALETC 501 Query: 108 KID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165 + ++L NL A PRGG+VT+S+ + + + G Sbjct: 502 IVSGDGERLRQVLSNLLSNAFKFTPRGGRVTVSLMRTDSHATLVVADTGQGISPEFLPHV 561 Query: 166 ----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 + DG+ S+ + V +A + ++ + L Sbjct: 562 FEAFRRADGSPASSRRGLGLGLSIVRHIAELHGGKVEVASAGKRLGTTFTVTLP 615 >gi|156935053|ref|YP_001438969.1| phosphate regulon sensor protein [Cronobacter sakazakii ATCC BAA-894] gi|156533307|gb|ABU78133.1| hypothetical protein ESA_02904 [Cronobacter sakazakii ATCC BAA-894] Length = 437 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 63/215 (29%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ + LE++ E +E + + + R++ + +++ Sbjct: 209 ANVSHELRTPLTVLQGYLEMMHEQTLEGPLREKALHTMREQTFRMEGLVKQLLTLSKIEA 268 Query: 80 LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + E + + +V + + + + NL Sbjct: 269 APAMQLNETIDVPMMLRVVEREAQTLSQQKQTFTFEVDPQLKVLGNDEQLRSAISNLVYN 328 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+ + N FS+ G E ++ + Sbjct: 329 AVNHTPAGTHITVRWEHVANGARFSVADTGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + RL E S LL Sbjct: 388 GLGLAIVKHALTHHDARLEIESTPGKGTTFSFLLP 422 >gi|154302225|ref|XP_001551523.1| hypothetical protein BC1G_09793 [Botryotinia fuckeliana B05.10] gi|150855567|gb|EDN30759.1| hypothetical protein BC1G_09793 [Botryotinia fuckeliana B05.10] Length = 1187 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 11/208 (5%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L S I H++ SP+ I S+ELL + I + + L + Y Sbjct: 677 LISSISHELRSPLQGIQGSIELLQDTQISTYQRSALETIGHCSTTLLDTLTNVLDYAKIN 736 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP------ 131 + ++V +AV V + +IL+N+F A Sbjct: 737 NFTTAQKTEQRVDSAPLAVILDVDHKSNWTFLTQPGAWKRILMNIFGNALKYTTSGLIKV 796 Query: 132 ---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYV 186 + + + ++ ++ G QI + + V Sbjct: 797 SLGCKTVTSKNSRVNQALVTLTISDTGRGIAEDFLKRQIYTPFAQEDSLTPGAGLGLSIV 856 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ I V++ +L+ Sbjct: 857 RQIVGALDGKIDVFSIQGAGTVVNVVLK 884 >gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 768 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 +S L L + + H++ +P+ I+ +E+L G Q + SA Sbjct: 381 RDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTGDHALQHQAVDAIDRSAR 440 Query: 62 IRLKFMRLA-----------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109 + + VD + D + ++ Sbjct: 441 SLTRMVGDILDASSLATGKLRLDATPVDVVRLFSDQVGTFQTAASSAGILLEFDCDASAC 500 Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +S + ++ L A P GG VT+ + + ++ G Sbjct: 501 IVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLARDGGHAVLTVADTGQGIATEFTPYV 560 Query: 167 IVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + V +A + + D + L Sbjct: 561 FDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGSVTVASAGRDRGTTFTVTLP 614 >gi|94263414|ref|ZP_01287228.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94264197|ref|ZP_01287993.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455372|gb|EAT05573.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456250|gb|EAT06384.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 520 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 64/241 (26%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLI------R 54 + + A+ L + HD + + I E LL+ + +L R Sbjct: 138 QAQLNQAQKMEAIGTLAGGVAHDFNNLLTVIKGYAEIALLEIKPDQPGHAELQGIMQAAR 197 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 S+ L F R +D + + Q++ I D + + + + Sbjct: 198 RSAELTRQLLAFARKQTVKPQKLDLNETVEGMLQMLRRLIGEDIELTWQPGADLWPVRID 257 Query: 115 RAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGN 156 ++ L + + L T + S+ NG+ Sbjct: 258 PGQVDQILANLCVNARDAVGDQGRIGIATANLVLDEDYCATHAGFTPGEYVQLSISDNGS 317 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E I + + + V + +N+ + + L Sbjct: 318 GM-DTETRKHIFEPFFTTKEVGKGSGLGLATVYGIVKQNEGFINFYSEPGQGTIFRIYLP 376 Query: 215 K 215 + Sbjct: 377 R 377 >gi|293369955|ref|ZP_06616522.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634873|gb|EFF53395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 479 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 301 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 302 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 361 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + +N ++ G Sbjct: 362 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 422 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 478 >gi|291619234|ref|YP_003521976.1| EnvZ [Pantoea ananatis LMG 20103] gi|291154264|gb|ADD78848.1| EnvZ [Pantoea ananatis LMG 20103] gi|327395563|dbj|BAK12985.1| osmolarity sensor protein EnvZ [Pantoea ananatis AJ13355] Length = 454 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 64/205 (31%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E+++E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMNEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 T D LG++ + + ++ + L NL + A Sbjct: 295 QTELADLNSVLGEVVAAESGYEREIENAVMAEELMLEINPLSIKRALANLVVNAARYGNG 354 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189 KV+ + F ++ +G + F V G+ + + V + Sbjct: 355 WIKVSSGRELH--RAWFQVEDDGPGIKPDQLAHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 ++ L + + + A L Sbjct: 413 IDAHQGSLEIGDSERGGLRIRAWLP 437 >gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1005 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK + + + + H+I +P+ I +L+ ++ + ++ +R SA Sbjct: 259 LAKARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLELSNKQKDYMRKIDRSA 318 Query: 61 IIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + SV I ++ E + + + Sbjct: 319 KALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFEIDPEI 378 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 ++L+NL A + DS +FS++ G Sbjct: 379 PQHLTGDPLRIKQVLINLVSNAVKFTDEGEIHIKAEVTEITDSDISILFSVRDTGVGIPA 438 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + + L + E + + S L Sbjct: 439 NEL-EKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVTVESDINMGSIFSFKL 496 >gi|283778882|ref|YP_003369637.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283437335|gb|ADB15777.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 262 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 60/234 (25%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 +A + L L +L + H+I +P+ I + L + + + + Sbjct: 30 LAAELPKLLEQQKLASLHAFAYGLSHEINNPLANIATRAQTLLADEPHPDRKRRLAVIVA 89 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVS 103 A + + + + ++ + + + + + Sbjct: 90 QAFRAHEMLADVMLFAKPPRLNRETVLVFSLLRELVDQFQSEAAAQQTSLTLVPPGDETA 149 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + A ++ G VT+ + + ++ G E Sbjct: 150 EQVAISADPVHLKMGVQAMLRNALEAVAHQGAVTLQLCVASKTIAIVVRDTGPGL-SEEA 208 Query: 164 FTQIVDGNVESTIDSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLSALLEK 215 + D + +A + + E + + L + Sbjct: 209 REHLYDPFYSGREAGRGLGLGLSKTWRIAELHGGAIAAENLAPTGCQFTLTLPR 262 >gi|260773908|ref|ZP_05882823.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii CIP 69.14] gi|260610869|gb|EEX36073.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii CIP 69.14] Length = 855 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ S L A +++ H++ +P+ I + +LL + + E +L+ + S Sbjct: 469 LAREQAE--ESARLRADFLAKMSHELRTPLNGILGASQLLKQNSLTQEQQELVNVLCSSG 526 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104 L + ++ + + + + ++ +R+ + Sbjct: 527 EHLLAVLNDILDFSKIEQGKFLIQNSDFPVVAMVSAIRRIYNPLCKEKGLELIIECAIEP 586 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFP 161 +IL NL A +G + ++ + S++ G Sbjct: 587 EIRLHSDQIRLNQILFNLLSNAVKFTHQGSICIKLALIQQGGIDKLMISIEDTGIGIAAT 646 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + V L + + + L Sbjct: 647 DL-QRIFAPFVQAESTTTREYGGSGLGLSIVSSLVELLHGEITVKSEVGYGTRFDLLFP 704 >gi|237717986|ref|ZP_04548467.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] gi|229452627|gb|EEO58418.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] Length = 482 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + +N ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481 >gi|257792573|ref|YP_003183179.1| Osmosensitive K channel His kinase sensor [Eggerthella lenta DSM 2243] gi|317488865|ref|ZP_07947395.1| osmosensitive K+ channel His kinase sensor domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832785|ref|ZP_08165548.1| putative histidine kinase KdpD [Eggerthella sp. HGA1] gi|257476470|gb|ACV56790.1| Osmosensitive K channel His kinase sensor [Eggerthella lenta DSM 2243] gi|316911939|gb|EFV33518.1| osmosensitive K+ channel His kinase sensor domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485924|gb|EGC88385.1| putative histidine kinase KdpD [Eggerthella sp. HGA1] Length = 926 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 68/242 (28%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51 + + + L A L I HD+ +P+ +I ++L + + ++ Sbjct: 667 RRRMEMRMEKETLRANLLRTISHDLRTPLTSISGDADMLLHDRGALSAQQKEHLYRDIHD 726 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106 L R+ G + + D+ V V++ Sbjct: 727 DACWLVTLVENLLSITRIDNGTLQLAEQPELVADVVREALQHVDRRAGRRRVDVELEDEL 786 Query: 107 EKIDLSRE-RAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161 D+ ++++NL A + P G++ V+ + ++ G Sbjct: 787 LMADMDARLIVQVIINLVNNAVSYTPADGRIVVSARRVVEHDRPRVRIAVADEGPGISEE 846 Query: 162 E---KFTQIVDGNVESTID-------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F +G+ + + + L ++ H S Sbjct: 847 DRKHIFDMFYNGSTGRRGGKSGDFKRGMGLGLSLCRSIVEVHGGTLDVRNVNPHGSEFSF 906 Query: 212 LL 213 L Sbjct: 907 TL 908 >gi|255693955|ref|ZP_05417630.1| putative two-component sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260620229|gb|EEX43100.1| putative two-component sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 482 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL + Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304 Query: 56 SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L + + G + + + ++IE I ++ + + Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364 Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E +L NL A G+V I + +N ++ G Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGID 424 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L E L+ Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481 >gi|197104163|ref|YP_002129540.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] gi|196477583|gb|ACG77111.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] Length = 631 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 S L AL L + HD + + AI SLEL + + L++ Sbjct: 247 EQQLRQSDKLRALGTLAGGVAHDFNNLLTAIVGSLELASKRLDRDPETVRRYLDNAALAA 306 Query: 58 MS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 L F R VD + + ++ + V+ + S Sbjct: 307 QRGASLTQRLLGFSRRTDSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAADLWPTSV 366 Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDS--------------KNENIFSLKINGN 156 E ++ + + A ++P GG +TI+ ++ + + + G Sbjct: 367 EPDQLEVAILNLAINARDAMPDGGVITIAARNVSLPAEADLERGLTAGDYVMLVIADTGE 426 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++++ + + V A + L + L Sbjct: 427 GM-PPELLERVLEPFFTTKPVGKGTGLGLPMVYGFAQRSGGTLSIRSTPGQGTEVVMYLP 485 Query: 215 K 215 + Sbjct: 486 R 486 >gi|206967910|ref|ZP_03228866.1| sensor histidine kinase [Bacillus cereus AH1134] gi|229068950|ref|ZP_04202244.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185] gi|229078584|ref|ZP_04211142.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2] gi|206736830|gb|EDZ53977.1| sensor histidine kinase [Bacillus cereus AH1134] gi|228704728|gb|EEL57156.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2] gi|228714234|gb|EEL66115.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185] Length = 466 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + E D + L Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457 >gi|167756877|ref|ZP_02429004.1| hypothetical protein CLORAM_02426 [Clostridium ramosum DSM 1402] gi|237734587|ref|ZP_04565068.1| signal transduction protein kinase [Mollicutes bacterium D7] gi|167703052|gb|EDS17631.1| hypothetical protein CLORAM_02426 [Clostridium ramosum DSM 1402] gi|229382407|gb|EEO32498.1| signal transduction protein kinase [Coprobacillus sp. D7] Length = 463 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 63/233 (27%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMS 59 MA+ + + S I H+ +P+ AI +L E + E Q + Sbjct: 218 MAQQLA---KQEETRQKFISDISHEFQTPLTAIQGFANILKEEDLPKEQRQKYADIILFH 274 Query: 60 AIIRLKFMRLA---------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 + + Y+ + E + + Sbjct: 275 SKRLSTLSKNMLQLTLLEREEVELEFTTYSIVEQLSRVISTQENQAILKDIEIQFEKPRK 334 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161 + ++ +NL A GG +T++V+ + E S++ G Sbjct: 335 DIMVYGDEQRLEQVWINLISNAIKYTGEGGLITVTVKKASREVEVSIEDTGYGMSKEVVS 394 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + +++ + + V + + + D L Sbjct: 395 HIFERFYREEKARSVEGNGLGLSIVKTIVDLHHGNIDVISQVDVGSTFVVKLP 447 >gi|254829515|ref|ZP_05234202.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165] gi|258601930|gb|EEW15255.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165] Length = 459 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+GG + + + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISKVDMTKIFD 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458 >gi|149189236|ref|ZP_01867523.1| osmolarity sensor protein [Vibrio shilonii AK1] gi|148836990|gb|EDL53940.1| osmolarity sensor protein [Vibrio shilonii AK1] Length = 439 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 66/218 (30%), Gaps = 7/218 (3%) Query: 4 NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60 + + ++ LL + I HDI +P+ I + E++ ++ + + ++ + Sbjct: 215 QMAKGIQELEQDRTLLMAGISHDIRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEII 274 Query: 61 IIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + +++ + + DI + + ++ + + + Sbjct: 275 GQFMDYLKPVNTQSFEPMSLNDISSDIVSSEGGYEIQIEYAPMATIKDIEGSPIAIKRAI 334 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 NL + A KVT + +++ NG + F G+ Sbjct: 335 TNLVVNAVRYGNGWVKVTTGMTADNKLAWVTIEDNGPGIEESQIGRLFEPFTRGDTARGS 394 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + Sbjct: 395 EGTGLGLAIVKRIISQHHGSVSISNRSAGGLKAQVSFP 432 >gi|50084548|ref|YP_046058.1| sensory kinase (soluble) in two-component regulatory system [Acinetobacter sp. ADP1] gi|49530524|emb|CAG68236.1| sensory kinase (soluble) in two-component regulatory system [Acinetobacter sp. ADP1] Length = 369 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 65/232 (28%), Gaps = 28/232 (12%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 + + L + H+I +P+G I + +LL + + + + Sbjct: 132 IQQHQVARQLIRGVAHEIKNPLGGIRGATQLLARSLNDPKYAEFTDIIINEVDRLRNLAD 191 Query: 69 LAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G V+ L + +I + ++ + D+ +R +++ + Sbjct: 192 TMLGSRQLPSYEDVNIHEPLERVRSLIVNQTKKKIKIIRDYDLSLPDVKADRDQLIQVML 251 Query: 124 MVAHASLPRGGKVTISVQDSKNE---------------------NIFSLKINGNLARFPE 162 ++ ++ + + + + ++ NG + Sbjct: 252 NISVNAIQAITENKEFFVEHEPQLMLRTRIQRLVTINGVLNRSAVRIDIEDNGPGI-PED 310 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + H++ + + I V S L Sbjct: 311 ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSIPGK-TVFSLYLP 361 >gi|16804620|ref|NP_466105.1| hypothetical protein lmo2582 [Listeria monocytogenes EGD-e] gi|16412070|emb|CAD00660.1| lmo2582 [Listeria monocytogenes EGD-e] Length = 459 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+GG + + + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISKVDMTKIFD 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458 >gi|47096765|ref|ZP_00234348.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|224503625|ref|ZP_03671932.1| hypothetical protein LmonFR_14163 [Listeria monocytogenes FSL R2-561] gi|254900964|ref|ZP_05260888.1| hypothetical protein LmonJ_14156 [Listeria monocytogenes J0161] gi|254913822|ref|ZP_05263834.1| sensor histidine kinase [Listeria monocytogenes J2818] gi|254938211|ref|ZP_05269908.1| sensor histidine kinase [Listeria monocytogenes F6900] gi|47014851|gb|EAL05801.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|258610823|gb|EEW23431.1| sensor histidine kinase [Listeria monocytogenes F6900] gi|293591839|gb|EFG00174.1| sensor histidine kinase [Listeria monocytogenes J2818] Length = 459 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%) Query: 4 NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L + + + H++ SP+ ++ LL + ++ Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115 RL + S+D L E V W+ + +L+ Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346 Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 ++ NL A P+GG + + + + ++ +G + F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISKVDMTKIFD 406 Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + S + + + + + + + L K Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458 >gi|330501102|ref|YP_004377971.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina NK-01] gi|328915388|gb|AEB56219.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina NK-01] Length = 598 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 60/212 (28%), Gaps = 21/212 (9%) Query: 23 CHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 H++ +PI +H + LL E + V + + L F R G Sbjct: 387 SHELRTPITGMHMAFSLLRERLSLPSSGREQELMRTVDEEMHRLVQLIDDLLNFSRYQNG 446 Query: 73 YTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFM--- 124 L ++ + + + LS + A++ + Sbjct: 447 MQTLQRRPCDLAEMIRQAPQRFVEKTAEREVTLVCEVHEPLPRLSLDAAQLERLIDNLID 506 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQ 182 A G +V + V+ + I S++ +G E+ +I + V+ + Sbjct: 507 NALRYSNPGDEVRLQVRRHGEQVIVSVQDDGEGI-PFEQQARIFEPFVQVGRRKGGVGLG 565 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +L L Sbjct: 566 LALAREIVQLHGGQLSVHSRPGEGSTFYFSLP 597 >gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032] gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032] Length = 1183 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 50/216 (23%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFM 67 + + H+ +P+ + LE +L + + + Q + + + + Sbjct: 318 ANVSHEFRTPLTLVLGPLEEMLADPELPEAYTQRLTVMHRNGLRLLKLVNTVLDFSRLES 377 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 + D G + V KI+LNL Sbjct: 378 GRLAAHYEPTDLADYTGRLASTFRSATERTGVRLVVDCPPLAEPVYVDQDMWEKIVLNLV 437 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV--DGNVESTIDS 178 A G + G E F + G + + Sbjct: 438 SNAVKFTFDGEIQIRVRPVDGA-ARLEVTDTGVGIHPDELPHVFERFHRVPGVRSRSHEG 496 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L + ++ D + + Sbjct: 497 TGIGLALVRELVEMHGGQVSASSQVDKGSTFAVTIP 532 >gi|296131357|ref|YP_003638607.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] gi|296023172|gb|ADG76408.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] Length = 370 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%) Query: 4 NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 ++ L L L + + H+I +P+ + LE +++ + E + L+R + Sbjct: 137 SMAARLQEGERLRGRLLADVAHEIRTPVATLTAYLEAIEDGVQDLGAETVALLRDQASRL 196 Query: 61 IIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + E ++ + ++ Sbjct: 197 TRLSDDLTAVTRAESGDLALDREHVAPGDLVAAAVAASRERAAERGVDLREDSSASLPEV 256 Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165 +R A++L NL A P GG VT+ + + +++ G + F Sbjct: 257 LVDRLRLAQVLDNLVTNALRHTPPGGTVTVGAASAGRDVTLTVRDTGEGIAAEDLPHVFE 316 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + + I + L H + L + L Sbjct: 317 RFYRADTARDRAHGGSGIGLAICLALVHAHGGTLSAASPGPGAGSTFTVTLP 368 >gi|302557886|ref|ZP_07310228.1| His Kinase A (phosphoacceptor) domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302475504|gb|EFL38597.1| His Kinase A (phosphoacceptor) domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 594 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 18/216 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL----- 69 ++ S I H++ +P+ I L+ + + ++ ++ + + +++ Sbjct: 378 VMVSDIAHELRTPLTNIRGWLDAAQDGLAETDSALLTSLQEEAELLQHIVDDLQVLAAAD 437 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 D + + + V+ V ++L NL Sbjct: 438 AGTLRLRPEDLDLRDLIKQIVSAHRATAQAGGVEIAVHAPDGLSVHADPVRLRQVLGNLL 497 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178 A P G+VT+S + +K G+ R + F + + Sbjct: 498 SNAIRHTPPAGRVTLSARRVAGAVAIEVKDTGSGIREADLPRVFDRFWRAEQSRSRRTGG 557 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + V L Sbjct: 558 SGLGLSIVRQLVRAHGGDVSVASRPHVETVFLVRLP 593 >gi|228919278|ref|ZP_04082648.1| hypothetical protein bthur0011_3060 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840385|gb|EEM85656.1| hypothetical protein bthur0011_3060 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 369 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYAMQYRVKCYLQVDGNLPTINGN 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGYLCISVEDQGFGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E++ + + + L Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSIGVGTKVEIFLP 367 >gi|228950901|ref|ZP_04113024.1| hypothetical protein bthur0006_3320 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808830|gb|EEM55326.1| hypothetical protein bthur0006_3320 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 369 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + + + I H+I +P+ A+ ++ E D + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + ++ K + D+L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGYLCISVEDQGFGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 367 >gi|217425387|ref|ZP_03456881.1| sensory box histidine kinase [Burkholderia pseudomallei 576] gi|217391638|gb|EEC31666.1| sensory box histidine kinase [Burkholderia pseudomallei 576] Length = 723 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|218528555|ref|YP_002419371.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520858|gb|ACK81443.1| histidine kinase [Methylobacterium chloromethanicum CM4] Length = 632 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 27/234 (11%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMS 59 ++ V L + HD + + I +S +LL + E + ++ Sbjct: 254 QAQKLEAVGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAPERRERYVAAISDTVDRAAKL 313 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-- 117 L F R + + + ++ R+ + ++++ Sbjct: 314 TGQLLAFARRQSLKPEVFAACDSVRALSDMMGTLTGSRIRIVTDLPEGTCFVHADQSQFD 373 Query: 118 -ILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L+N+ + A ++ + S+ G ++ Sbjct: 374 TALVNMAVNARDAMEGEGQLTIRVLGVEGMPPIRGQAAVEGPYVAVSISDTGVGI-PGDR 432 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V A ++ + H + L + Sbjct: 433 LERIFEPFFTTKGVGQGTGLGLSQVFGFAKQSGGEVTVASELGHGATFTMYLPR 486 >gi|52141484|ref|YP_085345.1| sporulation kinase B [Bacillus cereus E33L] gi|51974953|gb|AAU16503.1| sporulation kinase B [Bacillus cereus E33L] Length = 424 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|15673418|ref|NP_267592.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403] gi|12724425|gb|AAK05534.1|AE006373_13 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403] Length = 517 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 15/209 (7%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-----RLA 70 + + H++ +P+ +I ELL+ +I S + ++ + Sbjct: 309 ANVSHELKTPLTSIKGFAELLETDSISSSDTKNFASIINKESSRLMNLVQDTLLLTKQNH 368 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 ++ + +I Q I I NL A Sbjct: 369 RIDKKKINLTTLIQNILQSSGPQINEKSLHFESQIEEITFKTNEPMVHSIFENLIENAIK 428 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVES-TIDSHDIQFY 184 P G++ +S+ +N+ IFS+ NG + F + + + + Sbjct: 429 YTPANGQIFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLA 488 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213 V E + I + L Sbjct: 489 IVEKNVQELHGTIDVVSILGKGTTFTVNL 517 >gi|89098509|ref|ZP_01171392.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89086754|gb|EAR65872.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 376 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 58/229 (25%), Gaps = 24/229 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + L L + + HD+ SP+ +I L L+ + +Q+I + + Sbjct: 140 KAEQLKNELVTNVAHDLRSPLTSIIGYLNLINEDRYQDEVELRHYIQVITDKTAGLHSLI 199 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------- 116 + + + + +AV RVQ+ G + E Sbjct: 200 DDIFEYTYMQNQQALFEKHPIDLEELMNQLAVQSRVQLEDAGMEWRQFLEGDEPPIVLGD 259 Query: 117 -----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++ NL A G + I + + + + G E Sbjct: 260 GGKLIRVFENLIQNAVRYGREGKYLDIILGGTGHNVEIQVANYGPAIPGAELPHIFERFF 319 Query: 172 VESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + L + Sbjct: 320 RVEKSRSHFTGGSGLGLAIAKSIIELHGGTIEAKSRPGR-TAFIIRLPR 367 >gi|67920724|ref|ZP_00514243.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67856841|gb|EAM52081.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 473 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51 +A+ + L+ + L S I H++ +P+ + L+ L I+ E ++ Sbjct: 236 LAQTLQTTLTDLSHAWEDQRQLVSNISHELRTPLTVVSGYLQSTLRRGNNLTDIQREALE 295 Query: 52 LIRLSSMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + I L+ + + + +V L +IE +++ + K Sbjct: 296 TASSEAERTIQLLQDLLDLARAENGRMYFHLETVVLNELLTEIEGMVDQYPTPVKISLPD 355 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160 + ++ LNL A + + + K + + G Sbjct: 356 QLVKIKGDKNRLKQVFLNLVDNAVKYSHSSEPILLKLSQEKQQANIQVCDRGVGIPLTHQ 415 Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + V L + + + + L Sbjct: 416 TRIFERFYRVDEARSRNIGGTGLGLSIVKTLVEGMEGTIKVISQPNQGTTFTILFP 471 >gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1343 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 20/229 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEV--MQLIRLSSMS 59 ++ M L + I H++ +P+ I + E+LD V ++ ++ ++ Sbjct: 818 SERQKEMNEMKLRFFI--NISHELRTPLTLILAPVQEMLDRVSDRWLHKQLEHVQKNTNR 875 Query: 60 AIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--- 109 + + + F + + + + + D +A KR+ ++ Sbjct: 876 LLHLVNQLMDYRRAELGVFNLKVRLTPIHDVIEKNFLFYDRLAQRKRISYNFNSNVEGRE 935 Query: 110 --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 I+ NL A G VT+++Q+ +E + +K GN +K +I Sbjct: 936 ILCDPDYMELIVNNLLSNAFKYTGEGKSVTVTLQEENHELLLRVKDTGNGIPI-DKQGKI 994 Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I V LA + R+ E + S L Sbjct: 995 FERFYQIDNEHLGSGIGLSLVQRLADLHHGRIELESEEGAGSTFSVYLP 1043 >gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] Length = 2384 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 29/238 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59 N+ + ++ + I HD+ +P+ + ELL + + V + + Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDAKQDVYVESIRVCADTL 1934 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106 + + + G + I + + V+ V + Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTVEDLVSIDPNL 1994 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162 + +I +NL ++ P G ++ + + G + Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIIEEDTPEKIRMTCKVADTGIGISEEQ 2054 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 ++ + + + + R+ + + ++ L Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111 >gi|307718036|ref|YP_003873568.1| sensory histidine kinase in two-component regulatory system with AtoC [Spirochaeta thermophila DSM 6192] gi|306531761|gb|ADN01295.1| sensory histidine kinase in two-component regulatory system with AtoC [Spirochaeta thermophila DSM 6192] Length = 616 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 14/204 (6%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL--------AFGYTG 75 H+I +P+G I +E+L + E+ + + F+ + Sbjct: 396 HEINNPLGIISAYIEVLKLQDLSPEISRKLEKIQNEITRIQNFVSSLGRLADASRMEWGT 455 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPR 132 + + F V + + + ++L+NL + + +L Sbjct: 456 VDLVEMVKDVLLLFQHLFQEKRITVYTDLPETPVKIEGDAGRLKQLLINLVLNSVEALLH 515 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLA 190 GG + I ++ + + + S+ NG+ E +I + S + +A Sbjct: 516 GGWIRIRLERKEGKIVLSVSDNGHGI-PKEIQDRIFRPFFSTKAGKQSTGLGLAICEHIA 574 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 + + + Sbjct: 575 KLHGGEIGFTSTPGEITTFTVTFP 598 >gi|332873326|ref|ZP_08441280.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii 6014059] gi|323519818|gb|ADX94199.1| Signal transduction histidine kinase [Acinetobacter baumannii TCDC-AB0715] gi|332738389|gb|EGJ69262.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii 6014059] Length = 452 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 20/215 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78 I H++ +P+ + +E + + + S R+ + +++ Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290 Query: 79 -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + L D Q + + + I E A NL Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180 A P+GG +TI D FS++ G + + Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L ++ +A+ K Sbjct: 411 LGLAIVKHVLMQHGAYLDVLSKENEGSTFTAVFPK 445 >gi|240949675|ref|ZP_04754010.1| sensor histidine kinase [Actinobacillus minor NM305] gi|240295933|gb|EER46609.1| sensor histidine kinase [Actinobacillus minor NM305] Length = 616 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 22/219 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69 L + I H++ +P+ I +L E +E + + ++ ++SA+ Sbjct: 120 LMATISHELRTPLNGIIGLSRILLEGELEPKQREYLKTINISAVSLGHIFSDIIDLEKID 179 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERAKILLN 121 + + + ++ + ++ + ++++ N Sbjct: 180 SKRIELFNKPVEFIQLINDINHFANLMAGKKEIKFHLEYAKQLPHYINVDNARLSQVIWN 239 Query: 122 LFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS-- 178 L A P G +T+ + S + F + +G E+ D Sbjct: 240 LLSNAVKFTPEKGDITLKINQLSPSCFQFIVIDSGIGIAKEEQDKIFNMFYQSERSDGNK 299 Query: 179 ---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I +A L E + ++ Sbjct: 300 AQGSGIGLAVSKHIAQLMGGDLTVESQLGEGAAFTLTIQ 338 >gi|166031389|ref|ZP_02234218.1| hypothetical protein DORFOR_01078 [Dorea formicigenerans ATCC 27755] gi|166028794|gb|EDR47551.1| hypothetical protein DORFOR_01078 [Dorea formicigenerans ATCC 27755] Length = 498 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------ 49 M K + L L S I HD+ +P+ I E + + + Sbjct: 248 MRKRLKNTAE-EKLKFDKENKELISNISHDLKTPVTTIKGYAEGIMDGVADTPDKVAKYV 306 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------D 97 + +S ++ + + T + + + D Sbjct: 307 RTIYNKASEMDVLINELTLYSKIDTNRIPYNFTILSVNDYFNDCSEDLSLDLEAKNVEFG 366 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGN 156 V + I + +++ N+ + + + V+D + ++ NG Sbjct: 367 YFNYVEPKVKVIADPEQIKRVVHNIVNNSVKYMDKDKPKINLRVKDVGDFVQIEIEDNGK 426 Query: 157 LARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + F + + I V + E+ ++ + + Sbjct: 427 GIASKDLPNVFERFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREHTGTTMYF 486 Query: 212 LLEK 215 +L K Sbjct: 487 VLRK 490 >gi|163744984|ref|ZP_02152344.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161381802|gb|EDQ06211.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 547 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 67/238 (28%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 M +I + + + S + H++ SP+ +I S+ LL + + L+ +S Sbjct: 292 MLNDISDIIGEERMKSEFISMVSHELRSPLTSIKGSMGLLLSRAAGELPSKARALLEISH 351 Query: 58 MSAIIRLKFMRLA---------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 +A + + + + + + Sbjct: 352 RNADRLVLIINDILDLEKISTGQLEFNLEETDIAELLRETSAANSSLEQRHGVRIQVENT 411 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + ++L N A G ++TI +++ +E S+ G E Sbjct: 412 DTPMQVTTDPNRVIQVLTNFLSNAAKFSKPGERITIRAEENDHELRISVSDRGQGIPASE 471 Query: 163 KF---TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + D + + + + ++ + + L K Sbjct: 472 EHKVFQRFADLSNSKRAEKGGTGLGLSVCKAIVENLGGKIGFDSREGFGTTFYFTLPK 529 >gi|159897332|ref|YP_001543579.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890371|gb|ABX03451.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 399 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 65/234 (27%), Gaps = 38/234 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 L + + H++ +P+ +I +E L ++ + + + + + Sbjct: 162 LVANVSHELRTPLASIKLLVETLATQPPPELAQRMLGQVDTELDAVMQLVDELHELSQIE 221 Query: 74 --------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + I +++ D RV V+ + ++ +R +I L + Sbjct: 222 SGRTALQLQPTPVEDIVERANDRIQPQAKRKDLRVAVTIAPDLPEVYVDRDRISQVLLNL 281 Query: 126 AHASLPRG-------------------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 H ++ ++ ++ S I ++ G E + Sbjct: 282 LHNAVKWTDAGGTITIEAGLRSRSELGHHLSRMLEPSNRWVIMAIHDTGAGI-PAEAIPR 340 Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V L + + + + L Sbjct: 341 IFERFYKVDRARTRGVGGTGLGLAIVKHLVEGHGGVVWVASSEGRGSTFTVALP 394 >gi|159897466|ref|YP_001543713.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890505|gb|ABX03585.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 534 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 58/235 (24%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56 ++I + S + H++ +P+ I L + E++ I Sbjct: 282 RDITKQKRDEQQQSTFISVMSHELKTPVAIIKGYASTLSRTDVKLNKATKAEMLTGIEEE 341 Query: 57 SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + D D+ + Q+ + + Sbjct: 342 ADRLARLIGDLLEVSRMQAGGLRLHPAPFDLSELAADVVAAFAATVDQRFEFQLRFEPKL 401 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ +I + L A P GG + + + + G E Sbjct: 402 PHVYADQERIRMVLSNLISNAIKYSPEGGVIRLGGWPENGHVLSYVTDEGIGIAQEELP- 460 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + Y + + R+ + L Sbjct: 461 KLFTPFYRVDNRLARETQGAGLGLYLTKSIIEAHGGRMWADSTVGKGSRFYWTLP 515 >gi|194466633|ref|ZP_03072620.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] gi|194453669|gb|EDX42566.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] Length = 491 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 60/238 (25%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50 M + + +D + S + H++ +P+ I LE+L +D + Sbjct: 246 MFNEMLDRMQRYIDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWIKDDPKVLDDSIKATL 305 Query: 51 ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105 + ++ + + ++ + + + + D ++ Sbjct: 306 IETRRMKNLVQEMLDLSRAEQVEINFRNQHTIVNDVVHQVYNNFKMLYPDFTFRLDDDLK 365 Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 ++L+ L A K + ++ G PE Sbjct: 366 EPIMVDIYRDHLEQVLVILCDNAVKYSTDDHKEIHIILSRGMNTVEIGIQDFGEGI-SPE 424 Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ D + + L + E + +L Sbjct: 425 NVKRVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSVGAGSLFRIILP 482 >gi|39933660|ref|NP_945936.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39647506|emb|CAE26027.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Rhodopseudomonas palustris CGA009] Length = 913 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51 ++ + + A+ L + HD+ + + I +E+L + + + Q Sbjct: 523 KESERQLRQAQKMQAIGQLTGGVAHDLNNILTVITGGIEILADGVSDRPGLKDVAAMVDQ 582 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + +S L F R S+D + D +++ + + V + Sbjct: 583 AVTRASDLTHGLLSFSRKQPLQPRSIDVNALMLDTVKLLRPTLGAGIEIDVEPAPDLRPA 642 Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153 + +++ L A ++ GK + + ++ Sbjct: 643 LADPSQLGSALINLAINARDAMKGNGKLLLETGNVDLDQAYAAQHDEVSAGRYVMLAVSD 702 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G ++ + + + + V ++ + + H + Sbjct: 703 TGCGIPAS-IRDRMFEPFFTTKAVGEGTGLGLSMVYGFVKQSGGHIELYSEEGHGTTIRL 761 Query: 212 LLE 214 L Sbjct: 762 YLP 764 >gi|238785376|ref|ZP_04629363.1| hypothetical protein yberc0001_15290 [Yersinia bercovieri ATCC 43970] gi|238713703|gb|EEQ05728.1| hypothetical protein yberc0001_15290 [Yersinia bercovieri ATCC 43970] Length = 921 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSPHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSHHQIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++ + ++ +NL AH + I + NG + Sbjct: 769 DKMVLINCDGSLLERVFINLLENAHKYAGNVALLGIRAVVQGEWLNVEVWDNGPGVTPGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E D L Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGASFHFTLP 883 >gi|114561509|ref|YP_749022.1| signal transduction histidine kinase, nitrogen specific, NtrB [Shewanella frigidimarina NCIMB 400] gi|114332802|gb|ABI70184.1| signal transduction histidine kinase, nitrogen specific, NtrB [Shewanella frigidimarina NCIMB 400] Length = 345 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 69/230 (30%), Gaps = 22/230 (9%) Query: 5 ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 N+ + A L + H+I +P+G + + +LL E+ + L A Sbjct: 116 QQLNMDAQQQAAQFLVRNLAHEIKNPLGGLRGAAQLLSRELDSPELKEFTSLIIEQADRL 175 Query: 64 LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115 + + + + +++E + + ++ + D+ + Sbjct: 176 RNLVDRLLGPQRPTQHTEHNIHQVIQKVLKLVEMALPDNICLKRDYDPSIPDIQMDPDQM 235 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIF-----------SLKINGNLARFPEKF 164 + +LN+ A +L G + ++++ S+ NG E Sbjct: 236 QQAVLNIVQNAIQALEHCGGDIVIRTRTQHQVTIGTQRYKVVLALSIIDNGPGI-PAELM 294 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + +A + R+ H L Sbjct: 295 DTLFYPMVTGRDEGSGLGLSIAHNIARLHGGRIDCVSAPGH-TEFIINLP 343 >gi|322804531|emb|CBZ02082.1| two component system histidine kinase [Clostridium botulinum H04402 065] Length = 417 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + +++ ++++N+ A P G++ + + S+K +G + Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411 >gi|314936382|ref|ZP_07843729.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80] gi|313655001|gb|EFS18746.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80] Length = 588 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 23/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ + + + Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPNEIKESLSIVLDETKRLNRLVNELLNVARMD 423 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKILLN 121 + ++ L Q+ A D + + + ++L N Sbjct: 424 AEGLTINKEIQPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNYDADRIDQVLTN 483 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTI 176 L A G +TI+ I ++ G+ Sbjct: 484 LIDNATRYTHPGDSITITANKDSQYQILNINDTGSGIAPEHLDHVFDRFYKVEASRTRGK 543 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + E + L K Sbjct: 544 QGTGLGLFISKMIIQEHGGIISVESTVNKGTTFIIKLPK 582 >gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 628 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 72/241 (29%), Gaps = 28/241 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + L++ +L + + H+I +P+ I LL + + +++ + + Sbjct: 248 LEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLLKDTSLNPLQEEMLSIINSCG 307 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSW 104 L + ++ + + + ++ I + ++ S Sbjct: 308 DSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIANIASEKGITIHSKIDNSI 367 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159 +I+ NL A P KV + ++ + +FS+K NG Sbjct: 368 PQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCNGNIVKVLFSVKDNGIGMS 427 Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ ++ + LA ++ E S L Sbjct: 428 EEEQS-RLFQEFTQADEGVTRKFGGTGLGLSISSKLAKLLGGKIKVESRKGEGSKFSFEL 486 Query: 214 E 214 E Sbjct: 487 E 487 >gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 699 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/244 (9%), Positives = 50/244 (20%), Gaps = 35/244 (14%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + + + H+I +P+ I L + + + + L+ S Sbjct: 300 AREDAERANRAK--SEFLANMSHEIRTPLNGILGMTSLALMTCTDHKGREYLGLAQQSGQ 357 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105 L + + L E + + + Sbjct: 358 HLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVRFDATVAPDVP 417 Query: 106 GEKIDLSRERAKILLNLFMVAHA--------------SLPRGGKVTISVQDSKNENIFSL 151 I +I +NL + + + + I S+ Sbjct: 418 DCVIGDEGRLRQIYVNLIGNSIKFTTAGEVEVRVAVAATDGRREPAAMGGKGRICLISSI 477 Query: 152 KINGNLARFPEKFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + G S + L R+ E Sbjct: 478 RDTGIGIPQKNLKRIFDTFAQVSVGARYGGTGLGLSISKRLVELMGGRIWVESEPGRGST 537 Query: 209 LSAL 212 Sbjct: 538 FHFT 541 >gi|229177807|ref|ZP_04305180.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W] gi|228605598|gb|EEK63046.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W] Length = 466 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + E D + L Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457 >gi|228475987|ref|ZP_04060695.1| sensor protein ResE [Staphylococcus hominis SK119] gi|228269810|gb|EEK11290.1| sensor protein ResE [Staphylococcus hominis SK119] Length = 589 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 23/219 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73 + + H++ +PI + E + + E + ++ + + + Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPNEIKESLSIVLDETKRLNRLVNELLNVARMD 424 Query: 74 ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKILLN 121 + ++ L Q+ A D + + + ++L N Sbjct: 425 AEGLTINKEIQPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNYDADRIDQVLTN 484 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTI 176 L A G +TI+ I ++ G+ Sbjct: 485 LIDNATRYTHPGDSITITANKDSQYQILNINDTGSGIAPEHLDHVFDRFYKVEASRTRGK 544 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + ++ E+ + E + L K Sbjct: 545 QGTGLGLFISKMIIQEHGGIISVESTVNKGTTFIIKLPK 583 >gi|226947490|ref|YP_002802581.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226844514|gb|ACO87180.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 417 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + +++ ++++N+ A P G++ + + S+K +G + Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411 >gi|261366316|ref|ZP_05979199.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176] gi|282571916|gb|EFB77451.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176] Length = 448 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/205 (10%), Positives = 59/205 (28%), Gaps = 15/205 (7%) Query: 24 HDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 H++ +P+ +I ++L + + E I + + G Sbjct: 242 HELKTPMTSIIGYADVLRNLQTDPDEQREAAAAIYHEGRRLESLSQKLLALLALGGEELE 301 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKV 136 L + + + A V + + + +L L + G V Sbjct: 302 LTDVDL-ATLWKPLRAACPTVSLETPAGHWMVRGDADLLLDLLCNLVQNGAKASAPGTPV 360 Query: 137 TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLA 190 + +D+ + +++ +G E ++ + + +A Sbjct: 361 AVLCRDNGTAVMLAVEDHGCGIPETEIR-RVTEPFYMVDKSRARKQGGSGLGLALCKRIA 419 Query: 191 HENKIRLLPEIIDDHNVVLSALLEK 215 + L+ E + + L+K Sbjct: 420 AAHGSDLVIESVQGRGTTVRVFLQK 444 >gi|254507346|ref|ZP_05119482.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus 16] gi|219549806|gb|EED26795.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus 16] Length = 354 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 70/234 (29%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +++ + + LL + H+I +P+G + + +LL+ + + + + ++ A Sbjct: 123 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 181 Query: 61 IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + G + + L + Q++E I ++ + + + Sbjct: 182 DRLRNLVDRLLGPQKPGKKQHENLHLILEKVRQLVELEIGQSIVIERDYDPSLPEFLMDA 241 Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +I L + + + I Q K + NG Sbjct: 242 DQIEQALLNIVSNAGQILQGQENGKIVIRTRTVHQANIHGQRCKLAARIEIMDNGPGI-P 300 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + L +++ ++ E + + L Sbjct: 301 ADLQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIDVESWPGR-TIFTIYLP 353 >gi|187777131|ref|ZP_02993604.1| hypothetical protein CLOSPO_00676 [Clostridium sporogenes ATCC 15579] gi|187774059|gb|EDU37861.1| hypothetical protein CLOSPO_00676 [Clostridium sporogenes ATCC 15579] Length = 465 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 225 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 284 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 285 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 344 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + +++ ++++N+ A P G++ + + S+K +G + Sbjct: 345 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 404 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 405 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 459 >gi|170756447|ref|YP_001779913.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] gi|169121659|gb|ACA45495.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] Length = 417 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + +++ ++++N+ A P G++ + + S+K +G + Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411 >gi|154483121|ref|ZP_02025569.1| hypothetical protein EUBVEN_00822 [Eubacterium ventriosum ATCC 27560] gi|149735929|gb|EDM51815.1| hypothetical protein EUBVEN_00822 [Eubacterium ventriosum ATCC 27560] Length = 359 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 63/226 (27%), Gaps = 21/226 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLE-------LLDEVGIEDEVMQLIRLSSMSAII 62 + A L I HD+ +P+ +I + L E + + ++ + Sbjct: 133 EKEKMRANLLRSISHDLRTPLTSIIGASSSLTNDSLNLSEEERSHLMRNITEDAAWLLNM 192 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRE-- 114 + + + +E+++ D + D ++++ E + + + Sbjct: 193 VENILSVTKIQDDNRTLNKSSEPLEEIMSDSVHRVKRRIPDANIKITLPDEFVLVPMDAL 252 Query: 115 -RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++++NL A + + +K G +K Sbjct: 253 LIEQVIINLLENALKHSHSKKPIELYATIEPKTVTVYVKDYGIGISNDKKDEIFKSYTRR 312 Query: 174 STID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + + D V L K Sbjct: 313 NNSPDRDKGMGIGLSICQTIIEAHNGEIHADTH-DEGSVFYFSLPK 357 >gi|318607816|emb|CBY29314.1| osmolarity sensory histidine kinase EnvZ [Yersinia enterocolitica subsp. palearctica Y11] Length = 450 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 + + + L+A LL + + HD+ +P+ I + E++ E E + Sbjct: 217 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 276 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ T D LG++ + V + Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVMVDIHPLS 336 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 + L N+ + A KV+ + F ++ +G + + F V G+ Sbjct: 337 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 394 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + + A + Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 437 >gi|300857094|ref|YP_003782078.1| putative osmosensitive K+ channel histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300437209|gb|ADK16976.1| predicted osmosensitive K+ channel histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 911 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 21/235 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQ 51 + + L + L I HD+ SP+ I ++ + E + + + Sbjct: 668 QEKSKVEIERERLRSNLLRSISHDLRSPLAGIKGAVSTIIENGKFIPEKTKEDLLNGIYD 727 Query: 52 LIRLSSMSAIIRLKFMRL---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 L + +++ + + D +++V + Sbjct: 728 DTEWLISLVENLLSMTKFDEGNMKINKNLELVEEVVSEAVQRSSKYFKDHKIKVEVPKKL 787 Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 I + + ++L+NL A + + I V +S ++ F + +G Sbjct: 788 IMVPMDGNLIEQVLINLIQNAAKFSKKQSFIQIKVYESVDDVFFEVIDDGIGISDKILPH 847 Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + E + + + K Sbjct: 848 IFDRFFTNGSSIADSRRGVGLGLTICKSIVEAHCGTIEAENKKEGGAIFRFNIPK 902 >gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1314 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 60/208 (28%), Gaps = 15/208 (7%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 I H+I +P+ I LE + + G + +++I ++ + + + + Sbjct: 812 MIAHEIRTPVSLIIGPLEKMLKHGTPSDDLKVIDRNAHRLLELVNQLLDFRKVEQQSLVM 871 Query: 81 IGLGDIEQVIE---------DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128 + F K V + E ++ I+ + A+ Sbjct: 872 HFATHNIYQLMVSVSERFAPTFEQNGKHFTVEYPSEHFTAIVDKEAIIKTISNLLTNANK 931 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYYV 186 +++ S S+ NG R + +I + I V Sbjct: 932 YTKDQVRLSCSEDPDGEHLRISVSDNGVGIRQVD-QERIFQPFFQAEGNQPGTGIGLNIV 990 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + +L Sbjct: 991 KNIVTQHHGTISVDSEIGKGSTFTIILP 1018 >gi|282878423|ref|ZP_06287209.1| sensor histidine kinase/response regulator [Prevotella buccalis ATCC 35310] gi|281299409|gb|EFA91792.1| sensor histidine kinase/response regulator [Prevotella buccalis ATCC 35310] Length = 471 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 22/235 (9%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60 K + D L L I H++ +P+ +I LE +LD I + Q S + Sbjct: 235 KRLQSTRQEQDILKRQLTQNIAHELKTPVASIQGYLETILDNPHINEATRQQFLQHSYAQ 294 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115 RL + +D L + V + + + ++ Sbjct: 295 SQRLTSLLQDISTLNRIDDAPDLMEYSPVNISQMIENICKETELQMHNHHMAFVNNLPEN 354 Query: 116 ----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163 + NL A G +T+ ++ + E F+ + NG Sbjct: 355 VIIQGNQSLLYSVFRNLTDNAITYAGDGTTITLDGKEDEQEWRFTFRDNGIGVSNQHLSR 414 Query: 164 -FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + + + V + + ++ + L+K Sbjct: 415 LFERFYRVDKGRSRKLGGTGLGLAIVKNAIMLHGGSIQVHNVETGGLCFEFNLKK 469 >gi|260428060|ref|ZP_05782039.1| sensory box sensor histidine kianse/response regulator [Citreicella sp. SE45] gi|260422552|gb|EEX15803.1| sensory box sensor histidine kianse/response regulator [Citreicella sp. SE45] Length = 755 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62 + S + A+ L + HD + + AI +LL D+ + + I ++ A Sbjct: 377 VQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDPDYADLVQINQNANRAAA 436 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRER 115 + + ++ L D + + +V + R+ Sbjct: 437 LVGQLLAFSRKQTLRPEVLDLRDTLSDLTHLLNRLVGEKVQLSLSHDPVLPTIRGDRRQL 496 Query: 116 AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++++NL + A ++ +V + + + G Sbjct: 497 EQVMMNLVVNARDAMPDGGEIVIETERRVVMEPMMRDRAVVEPGDYASVKVIDQGVGI-P 555 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K ++ + + + + V + + + + + L Sbjct: 556 QDKLQKVFEPFYTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSTAGKGSCFTLLFP 611 >gi|258654527|ref|YP_003203683.1| histidine kinase [Nakamurella multipartita DSM 44233] gi|258557752|gb|ACV80694.1| histidine kinase [Nakamurella multipartita DSM 44233] Length = 492 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 62/229 (27%), Gaps = 20/229 (8%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSA 60 + L + H++ +P+ A+ +L L + D MQ + + Sbjct: 241 ERRRNEDKLRRFIA-DASHELRTPVAAVRGYTDLYQAGALPDESAVDRAMQRMGFEARRM 299 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDL 111 + + L D+ +++ + + + Sbjct: 300 GALVDDLLTLIQADAENAVGHELVDLNELLTGVVDDAAVIDPTRIWRLAASNGGVDVFGD 359 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIV 168 ++ NL G T+SV +E S+ +G + F + Sbjct: 360 RLRLHQVFANLLSNIRTHTAEGTVATVSVLPGLDEIAVSVSDDGPGVSDEDLDRLFDRFY 419 Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + + R+ + ++ +L + Sbjct: 420 RVDPSRSRERGGTGLGLSIVAAIVRGHGGRIAATHTPGGGLTITVVLPR 468 >gi|297568744|ref|YP_003690088.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924659|gb|ADH85469.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 646 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 72/221 (32%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L + + H++ +P+ +I + +LL + E+++L +S A+ K + Sbjct: 422 LTAGLTHEMRNPLSSIRMNTQLLQQSTRLLQQGLQRPELVELAEISRQQALRLEKMLNDL 481 Query: 71 FGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 GY + +GL + ++ + ++ V + + + ++ L Sbjct: 482 LGYGKPLTLRLGLIRMGELLQSVVEAVEVEREQAGVQLAVDDQTDDCRMELDGELMIRAL 541 Query: 123 FMVAHASLPRGGKVTI---------SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++ + + D + +F ++ +G EK ++ Sbjct: 542 SNLVLNAIQWSPQGQTVELLARFGENSDDGAKQVVFEVRDHGPGV-TAEKRHRLFQPFFT 600 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + V L Sbjct: 601 TRSGGTGMGLANVKKIVEYHGGTVSAANLPAGGAVFRLELP 641 >gi|228899068|ref|ZP_04063340.1| hypothetical protein bthur0014_2960 [Bacillus thuringiensis IBL 4222] gi|228963451|ref|ZP_04124610.1| hypothetical protein bthur0004_3340 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796244|gb|EEM43693.1| hypothetical protein bthur0004_3340 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860509|gb|EEN04897.1| hypothetical protein bthur0014_2960 [Bacillus thuringiensis IBL 4222] Length = 369 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 M + + + + + I H+I +P+ A+ ++ + + ++ Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIER 204 Query: 60 AIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111 + + + D L+ + + + V +QV Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++ ++LLN+ S+P GG++ I Q ++ S++ G EK +I Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 323 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E++ + + + L Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367 >gi|225870858|ref|YP_002746805.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi subsp. equi 4047] gi|225700262|emb|CAW94499.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus equi subsp. equi 4047] Length = 441 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 59/215 (27%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFGY 73 + H++ +P+ +I E + E+ ++ ++ + S I + L+ Sbjct: 223 ANASHELRTPVTSIKGFAETIKEMPDDETSLKEDFLDIIYNESLRLERIVEHLLTLSKAN 282 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMV 125 +D + + + + ++I+LNL Sbjct: 283 KTPLDLTEFQLRNFLLYTGQSMRPQLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSN 342 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A GG++ +S Q ++ G E +I + Sbjct: 343 AIQYTDNGGRIQLSSQRVAGGVAITVADTGIGISQIEL-DRIFERFYRVNKGRSRQSGGT 401 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 402 GLGLAIVKELSQLLGGQITVTSQLGEGSQFTLFLP 436 >gi|253701352|ref|YP_003022541.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776202|gb|ACT18783.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 886 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 68/251 (27%), Gaps = 38/251 (15%) Query: 1 MAKNICFNLS-----SMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEV 49 +A+ L + L +L L I HD + + AI + +L L+ + Sbjct: 497 LAEQERLKLEQQLLHAQKLESLGVLAGGIAHDFNNLLTAIVGNTDLALMRLNPESPVRDN 556 Query: 50 MQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 ++ I ++ A K M ++D + ++ ++E ++ + + T Sbjct: 557 LERIEQAASRAADLAKQMLAYSGKGRFIIQTIDLNRLIREMTHMLEVSVSKKAILNFNLT 616 Query: 106 GEKIDLSRERAKILLNLFMVAHAS----------------------LPRGGKVTISVQDS 143 + + ++ + + + G Sbjct: 617 DPLPAIEADATQLHQIIMNLIINASEAIDKESGVITIATGSMQCDRTYLNGIWVHEQLAE 676 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 + G E +I D + + V+ + +K + E Sbjct: 677 GLYVWLEITDTGCGM-DAETVAKIFDPFFTTKFTGRGLGMAAVLGIIRGHKGAITVESYP 735 Query: 204 DHNVVLSALLE 214 L Sbjct: 736 GRGAAFKVFLP 746 >gi|188582500|ref|YP_001925945.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179345998|gb|ACB81410.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 622 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 20/224 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLE---------LLDEVGIEDEVM-QLIRLSS 57 + L AL + + H+I P+ AI + + +++ + +L Sbjct: 381 QAGRLAALGQFAASMAHEINQPLAAIRSYADNTAILVRRGRIEDAAENVSAIGRLTERIG 440 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSR 113 F R A G V + +V+ A Sbjct: 441 TLTRQLKGFARRASGRREPVRLADIIHGSLEVVSWRAAQAGITLDVPPPAPDLAVLGDGP 500 Query: 114 ERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 ++++NL A ++ I ++++ + NG Q+ D Sbjct: 501 RLEQVVVNLLQNALDAVTGRPDPWIAVRIEEAGERVAVEVADNGPGI-PEAVRAQVFDPF 559 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E L D L + Sbjct: 560 FTTKSEGLGLGLAICRGIVEECGGTLGLRSGAD-GTTFRMELTR 602 >gi|162453719|ref|YP_001616086.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161164301|emb|CAN95606.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 2019 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/251 (9%), Positives = 60/251 (23%), Gaps = 40/251 (15%) Query: 1 MAKNICFNLSSMDLVA------------LLCSRICHDIISPIGAIHNSLELLDE------ 42 +A L + L A LL + H++ +P+ ++ LL Sbjct: 1754 LASRAALALDNSRLFAEAQEAIERRDEFLLVA--SHELKTPLTSLTMQAHLLARLLPRLQ 1811 Query: 43 -----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDI 86 D +QL+ + + + + Sbjct: 1812 RAEVAPERIDAAIQLLNRQIARLAHLVNELLDVTRLNAGQLTLSRAPVDLAALAREVVER 1871 Query: 87 EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146 ++++ ++L+NL A G + + V+ Sbjct: 1872 MHQQLTDARCRTQLELDEPVMGHWDPSRMEQVLINLLSNALKYGAGGL-IHVIVRREGAR 1930 Query: 147 NIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 + ++ +G + F + + Y V + + + E Sbjct: 1931 AVLVVRDHGMGIAEADQARIFERFERAVSVRNFGGLGLGLYIVRWIVTSHGGTIRVESRP 1990 Query: 204 DHNVVLSALLE 214 L Sbjct: 1991 GAGATFIVELP 2001 >gi|160933135|ref|ZP_02080524.1| hypothetical protein CLOLEP_01978 [Clostridium leptum DSM 753] gi|156868209|gb|EDO61581.1| hypothetical protein CLOLEP_01978 [Clostridium leptum DSM 753] Length = 476 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 23/234 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58 MA+ + +S + S + H++ +P+ AI E + + + + + Sbjct: 236 MAQELG---ASEKMKNDFISSVSHELRTPLTAIKGWAETMKMTGPADAVTMEKGMSIIVR 292 Query: 59 SAIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 + + + + + + Sbjct: 293 ETERLSGIVEELLDFSRMQNKAMVLMMDKIDLLAELDEAVYMYRERAISENKHLDFEEPE 352 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++ +N+ A P G V+I VQ+ + + NG E Sbjct: 353 SISPVLADKNRMRQVFVNVIDNALKYTPEDGMVSIRVQEDEKFIHIYIVDNGCGI-PAEH 411 Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ D T I + + L E + + + K Sbjct: 412 LPRVKDKFYKANQTQRGSGIGLAVADEIMTLHSGSLQIESEEGVGTTVIISIPK 465 >gi|126455985|ref|YP_001075878.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a] gi|242312376|ref|ZP_04811393.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b] gi|126229753|gb|ABN93166.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a] gi|242135615|gb|EES22018.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b] Length = 723 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|119476350|ref|ZP_01616701.1| Signal transduction histidine kinase [marine gamma proteobacterium HTCC2143] gi|119450214|gb|EAW31449.1| Signal transduction histidine kinase [marine gamma proteobacterium HTCC2143] Length = 437 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 67/220 (30%), Gaps = 22/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAIIRLKFM--- 67 + + H++ +P+ I LE L D+ + + + S +K + Sbjct: 208 FVANVSHELRTPLTVITGYLETLSDNSYSLDDELRWRRAVDQMLVQSHRMESLIKDLIVL 267 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +A ++ ++ + + + + + + + + S E Sbjct: 268 SRLESLPDIAEQLPMAIRPMLEVIRDDVLTAVKSPREIIIDCDDSLQLVGNSIELQSAFS 327 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTID 177 NL M A P G++TI S++ NG + + +I+ Sbjct: 328 NLIMNAAKYTPVEGEITIRWFADGQHLCLSVEDNGEGIDSHHLPRLTERFYRVDKSRSIE 387 Query: 178 --SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++ L+ S L + Sbjct: 388 TGGTGLGLAIVKHILLHHEAELMISSQVGKGSTFSCLFPR 427 >gi|66046584|ref|YP_236425.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63257291|gb|AAY38387.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 646 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +++ S + A+ L I HD + + I SLELL + +L R Sbjct: 257 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGA 316 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ L F R VD + +E++I + ++V + Sbjct: 317 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 376 Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151 + ++ LNL + A ++PRGG++TI + + Sbjct: 377 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQGRDLIPGQYLSLCV 436 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE ++ D + + V ++ ++ + Sbjct: 437 SDTGTGM-SPEVINRVFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPGQGTNM 495 Query: 210 SALLEK 215 L + Sbjct: 496 CLYLPR 501 >gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 785 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 50/220 (22%), Gaps = 16/220 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNS------LELLDEVGIEDEV--------MQLIRL 55 S L + + H+I +P+ AI E L+E + + +QLI Sbjct: 421 QSDRLKTAFLANMSHEIRTPLNAIVGFSNLLPSAETLEEEKLYSSIINQNSEILLQLIND 480 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + I + + + I + + Sbjct: 481 ILDLSKIEAGTLEYVRQPMNLGEICRNIYQIHKDRVQEGVTLILDNQDEDLIIEEDRNRI 540 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174 A+++ N A G + F +K G + S Sbjct: 541 AQVITNFLTNAGKFTLSGEIRFGFKVN-NQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNS 599 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + + + Sbjct: 600 FAQGTGLGLAICRMIIEKIGGEIGVTSEIGKGSTFYFTIP 639 >gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1296 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/216 (9%), Positives = 55/216 (25%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ I ++L + + + + Sbjct: 1070 AILGHELRTPLNPIIGWTQMLRRGKVGPDKHDQALEIIERNARLQTQLIDDLLDVSRIMR 1129 Query: 80 LIGLGDIEQVI---------------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + + V Q+ T +++ NL Sbjct: 1130 GSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQLFEQLRTTAPLSADPTRLQQVVWNLLT 1189 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNV--ESTIDSH 179 A P GG+V + ++ ++ G P F + + Sbjct: 1190 NAVKFTPAGGQVQVRLESGGGMARLTISDTGVGIPAEFLPHLFERFRQADTKSTREQKGL 1249 Query: 180 DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + V + + + E + + +L Sbjct: 1250 GLGLFIVRHIVEAHGGTVQAESEGEGKGAAFTVVLP 1285 Score = 101 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 24/217 (11%) Query: 20 SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFM 67 S + H+ +P+ + LE +L GI + + L+ + Sbjct: 378 SNVSHEFRTPLSLLLGPLEDVLAGDGISAPTREQLTLAQRNGRRLLKLVNTLLDFSRIEA 437 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123 D + V + V KI+LNL Sbjct: 438 GRIQANFLPTDLASLTAQLVSVFRSAVEKAGLRLVIDCPPLAEAVYVDRDMWEKIVLNLL 497 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177 A RG Q + L+ G E +I D + + Sbjct: 498 SNAFKFTLRGQIAVRLRQQTGE-VCLELEDTGVGIAAHELP-RIFDRFHRVAGVAGRSHE 555 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L + ++ + + + L Sbjct: 556 GSGIGLALVAELVEIHGGKVSVQSVSGRGSTFTVRLP 592 >gi|332798326|ref|YP_004459825.1| histidine kinase [Tepidanaerobacter sp. Re1] gi|332696061|gb|AEE90518.1| histidine kinase [Tepidanaerobacter sp. Re1] Length = 324 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 72/232 (31%), Gaps = 20/232 (8%) Query: 2 AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 ++ + + L A + + H+I +PI +I L++L + ED+ + +S Sbjct: 90 KESQREKVQNESLTAEKQMAASYIHEIKNPIFSIRGFLQILHQSFSEDDKRKEYVNIIIS 149 Query: 60 AIIRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + R+ + F D + F D + + Sbjct: 150 ELDRMNSLINEFLSKYKDDSFINGEDKGGTSVKKTIEEVVAFFQYGFKLKDITCKCDLSS 209 Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPE 162 +++ + ++ +++ L + ++ G ++I +K G R + Sbjct: 210 DELVIMVDKEQLIQILINLIQNSIEAMKTGANLSIKAYAKDKTTCIVEIKDEGIGIRQDD 269 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + Y + + + E + Sbjct: 270 I-DKIFNPFFSTKENGTGLGLYITKKIINNYGGSIYLESTEGKGTTFYLEFP 320 >gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 1022 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +LL + + + +++ + + Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105 + + L+ +GSV+ D+ + + + K+ + Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A P+G + + ++ G +K Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDTGIRLYVRDTGIGIPEEKKRK 814 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + A+L Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864 >gi|256830042|ref|YP_003158770.1| response regulator receiver sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579218|gb|ACU90354.1| response regulator receiver sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 382 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 63/238 (26%), Gaps = 28/238 (11%) Query: 4 NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSS 57 + + L AL L + + H+I +P+ I N E+L E +E + I S Sbjct: 125 SRQRMAETAKLAALGELATGVAHEINNPLQVILNEAGWIEEILGETALEGNSREQILESI 184 Query: 58 MSAII--------------RLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQV 102 + T D + + IE ++ Sbjct: 185 ALIRRQGLRCKAITSKLLTLRCALDAKGATTNLPDLVHEVLIARRAQIEKMGIRVEKHWP 244 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLA 158 E E ++IL NL A +L E I S++ +G Sbjct: 245 EQLREVKLPDSEWSQILGNLVDNAMDALESTPAEERLLTIQADVDDAELIISVQDSGCGI 304 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T+I + + + + + H + + Sbjct: 305 -EEHLLTRIFEPFFSTKEVGKGIGLGLAICHGIIEAMGGSISVRSTPGHGSTFTIKVP 361 >gi|253699979|ref|YP_003021168.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774829|gb|ACT17410.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 859 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 61/243 (25%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 + + F M+ + L + HD + + I S +L E + ++ I + Sbjct: 473 LLEAQLFQSQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQA 532 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109 + + + + L + ++ Sbjct: 533 GKRSSQITRQLLAFSRKEIIAPREVNLNEHFTEMQKTLGRLIGEDIRMNFNPAPGLWTID 592 Query: 110 DLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKIN 154 + + +IL+NL + A ++ GG ++ N Sbjct: 593 ADTTQLDQILVNLAVNARDAMGNGGVLTIETANVRVDRSYSQFHLDASLGEYVQLAVSDN 652 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E QI + + + V + ++ + H Sbjct: 653 GCGM-DRETLAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGHGTTFQIN 711 Query: 213 LEK 215 + Sbjct: 712 FPR 714 >gi|220911015|ref|YP_002486324.1| multi-sensor signal transduction histidine kinase [Arthrobacter chlorophenolicus A6] gi|219857893|gb|ACL38235.1| multi-sensor signal transduction histidine kinase [Arthrobacter chlorophenolicus A6] Length = 563 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 20/223 (8%), Positives = 61/223 (27%), Gaps = 28/223 (12%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIRLKF------- 66 + + H++ +P+ +I L+++ E + +++ ++ ++ ++ Sbjct: 332 ATVNHELRTPLTSIMAYLDMIQESTEQPGSAEIHQMLDIVVRNTERLRTLIEDMLSVSRN 391 Query: 67 -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLN 121 + + V L + + + V E + + ++ N Sbjct: 392 GLDDTLMHLTPVRLGHTLDLVASALRPLAKLQNVTIALDPVPDDPEILADEIQLQQVFTN 451 Query: 122 LFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQIVDGN----- 171 L A P GG++ + + + NG E Sbjct: 452 LVSNAIKFTPSGGRIEVGSESHAAADGSRWATVRVADNGIGISSDEIDHVFTRFYRASNA 511 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + + ++ L Sbjct: 512 MSGAIPGTGLGLAITKDIVARHGGTIDVASTLGAGTTVTVSLP 554 >gi|169826281|ref|YP_001696439.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41] gi|168990769|gb|ACA38309.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41] Length = 446 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 15/211 (7%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI----------IRLKFMRL 69 S + HD+ +P+ +I ELLD+ + + +R Sbjct: 233 SNVSHDMKTPLASIRGYAELLDDETLTSQEKAEYAQIIEKQSLHMQNLLDDLNLTMRLRH 292 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNLFMVAH 127 + + E VI+ + + + + + Sbjct: 293 QQLPLTLKEVNMVPFIREIVIDTLNTPQFELANIDFEAISENHHQLIDEHFMRRAIINFL 352 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFY 184 + +SV S +++ ++ NG + F + G + Sbjct: 353 HNALLHNTPDVSVHVSVDKDSITIADNGKGISSEDLEHIFERYYRGTNTDNTAGTGLGTA 412 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++S L+K Sbjct: 413 IARDIIEAHGGFVTITSEKGKGTIVSINLKK 443 >gi|153003555|ref|YP_001377880.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027128|gb|ABS24896.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 380 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIED-----EVMQL 52 A+ + L S I H++ +P+GAI EL L + E + Sbjct: 142 ARESLVRAERLATAGQLASGIAHEVGNPLGAITGYAELARSRLRDGSPPALAQAAEFAER 201 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110 I + ++ + + V I + + R + E + Sbjct: 202 IAAETARIDRIVRDLLDLARPSAPVVRPIDVRGPLEAALRLARAQPRFRAVEVTEDLPAA 261 Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + A++LLNL + A ++ G + + + +++ G + Sbjct: 262 LPRALADEQRLAQVLLNLLLNAGDAMGGAGAARVRARAAGGFVELAVEDAGPGFDTADLS 321 Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ + + + + + E + L K Sbjct: 322 -RVFEPFFTTKGAGQGTGLGLAICRSIVEALGGDIRAENAPGGGARVVVRLVK 373 >gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] Length = 541 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 66/220 (30%), Gaps = 26/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII-----RLKFM 67 + + H++ +P+ AI ++L + E + L+R S + Sbjct: 289 AVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVTLVRDSGQHLLAVVTSILDVSR 348 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILL 120 + YT + + ++ + + + + + ++L+ Sbjct: 349 IESGAYTADPEPFRFMEAVDMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQMLI 408 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174 NL A P GG V + + + F ++ G E F + Sbjct: 409 NLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGI-AEEDFANLGKPFTQIQNDYTR 467 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ + E + ++ L Sbjct: 468 RFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 507 >gi|15612936|ref|NP_241239.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10172986|dbj|BAB04092.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 459 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 54/218 (24%), Gaps = 22/218 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYT 74 S H++ +P+ I + +L G++ + + + A+ Sbjct: 234 QFVSDASHELKTPLTVIESYASMLRRWGMKKPELLDEAVEAIHEEAVRMKAMTEQMLQLA 293 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKIDLSRERAKILLNLF 123 + ++E + + VS+ + +++ L Sbjct: 294 NEDAREVLEKKEVDLLEVAEKACQHIHVSFEREIQVVKQGEVFRVWADENKLKQVVYILL 353 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A VTI S+ G + +I D Sbjct: 354 DNARKYSQGRITVTIKETS--ETCSLSVMDQGIGISKGDL-EKIFDRFYRVDKARARETG 410 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E + + +L K Sbjct: 411 GAGLGLSIAKAIVDAHGGEIAIESREGKGTTVLVVLPK 448 >gi|332708955|ref|ZP_08428926.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L] gi|332352497|gb|EGJ32066.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L] Length = 701 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + M+ + L I HD+ + + I S +LL + +QL++ +A Sbjct: 323 ETQFLHAQRMESIGTLAGGIAHDLNNLLAPILMSAQLLQLKISDQRHLQLLKTVENNARR 382 Query: 63 -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 L F R G + + +I +I + + +S + Sbjct: 383 GAGLVKQVLSFARGITGQRTVLQVRHLIREIRHIILETFPRSIELSTDIDPNLWSVSGDA 442 Query: 116 ---AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNL 157 ++L+NL + A ++ D + ++ +G Sbjct: 443 TQLHQVLMNLCINARDAMVDGGTLTLSAQNIFLDPNYARMHIDADVGPYIVVTVADSGIG 502 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + + L Sbjct: 503 IPLK-IQPRIFEPFFTTKEIGQGTGLGLSTVRGIVKSHGGFVNVYSEVGVGTNFKVYLP 560 >gi|330012468|ref|ZP_08307382.1| osmolarity sensor protein EnvZ [Klebsiella sp. MS 92-3] gi|328533819|gb|EGF60498.1| osmolarity sensor protein EnvZ [Klebsiella sp. MS 92-3] Length = 451 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + L N+ + A Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 G + +S + F ++ +G + F V G+ + + V + Sbjct: 353 NGWIRVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + RL + +++ A L Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437 >gi|320158468|ref|YP_004190846.1| sensor protein torS [Vibrio vulnificus MO6-24/O] gi|319933780|gb|ADV88643.1| sensor protein torS [Vibrio vulnificus MO6-24/O] Length = 970 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ + + LL + G+ + + + S Sbjct: 458 AKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQKRYADIINRSGK 517 Query: 62 IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105 L + Y+ +S L + + + ++ Sbjct: 518 NLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVN 577 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 +++L NL A +G + +N F + G E+ Sbjct: 578 HYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQ 637 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T S + + ++ + + Sbjct: 638 ATLFDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVP 692 >gi|307822681|ref|ZP_07652912.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736285|gb|EFO07131.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 872 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----RLKFMRLAFGYT 74 + + H++ +P+ I N++ LL D + L + + +A Sbjct: 517 AMLAHELRNPLAPIRNAVRLLKMQEATDPKLTLSCNIIDRQVTHMTRLLDDLLDMARIMQ 576 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAKILLNLF 123 G + I ++ ++ + I + + Q A++L NL Sbjct: 577 GKIRLKIEHFELTDIVNNAIETSRPLLESRKQELIISQTMTPQWLEGDHVRLAQVLSNLL 636 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-----DS 178 A GGK+ +SV ++ + +K G Sbjct: 637 NNAAKYTGEGGKIMLSVMRKGSDAVIEIKDTGIGISPDILPQIFDLFTQADHTLAHSQGG 696 Query: 179 HDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 I V L + + + L Sbjct: 697 LGIGLTLVRQLVEIHGGTVTAASEGIGQGSTFTVRLP 733 >gi|237756786|ref|ZP_04585277.1| alkaline phosphatase synthesis sensor protein PhoR [Sulfurihydrogenibium yellowstonense SS-5] gi|237691052|gb|EEP60169.1| alkaline phosphatase synthesis sensor protein PhoR [Sulfurihydrogenibium yellowstonense SS-5] Length = 337 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 64/217 (29%), Gaps = 19/217 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H++ +PI + +++E +++ + +++ + ++ + Sbjct: 120 FVSNVSHELKTPISVLKSAMETIEDEIKDSNILKFVDMAKKRINQMDSLINDLLILARLE 179 Query: 78 DSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEKIDLSRERAK----ILLNLF 123 + + ++ + DK +++ K + L NL Sbjct: 180 SQEDLVKKKKYLLRKQVEDIFEDLQHLTKDKNIKLKNNIPKNFEVYADEQKLSIALKNLI 239 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VESTIDS 178 A + G V ++ + + S+ G F + + I Sbjct: 240 ENAIKYNVQNGIVEVNAKTDGKYDTISVIDTGIGIPPESIPLVFERFYRVDKSRSRNIGG 299 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + +K ++ E + K Sbjct: 300 TGLGLSIVKHITEAHKGKVWVESQVGKGSRFYIKIPK 336 >gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1153 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 29/238 (12%) Query: 5 ICFNLSSMDLVALLCS------RICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 + L A+ + I H+ +P+ + LE LL + +++ + ++ Sbjct: 327 QEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQDTALQESTYKQPIEAT 386 Query: 58 MSA---------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + A S + +G + F ++ +R + + + Sbjct: 387 HRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAGLELSVDC 446 Query: 109 IDLS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + K++LNL A +G ++ + G Sbjct: 447 EPMPAVVYADAEMWEKVVLNLLSNAFKYTLKGHIGVQLTAEADGVV-LRVSDTGVGIPAA 505 Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + T + I V L + + + + L Sbjct: 506 ELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTFTVRLP 563 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 69/248 (27%), Gaps = 40/248 (16%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58 ++ + ++ A + S HD+ P+ I + +LL ++ + ++ ++ ++ Sbjct: 903 DLQRSNDNLQQFAYVAS---HDLQEPLRKIQSFGDLLKNQYADNLGEGIDYLKRMQTAAN 959 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------- 111 ++ + T + + E + + ++ +Q + +I Sbjct: 960 RMSTLIRDLLSFSRITTRQEVTETVSLAETLSMVVLDLEVMIQETGAEMRIHPLPTVLGD 1019 Query: 112 SRERAKILLNLFMVAHAS--------------------LPRGGKVTISVQDSKNENIFSL 151 + ++ NL A + + + + Sbjct: 1020 RSQLIQLFQNLLSNALKFRRKSSAGVSVPPVVEVSAQLVNVSELPSTVRPTRSVAAYYRI 1079 Query: 152 KINGNLARFPEKF-TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + N F EK+ +I S I + + + + Sbjct: 1080 DVTDNGIGFNEKYLDRIFQVFQRLHGKSEFQGTGIGLAICEKVVANHGGVITAQSQPGEG 1139 Query: 207 VVLSALLE 214 S L Sbjct: 1140 ATFSVYLP 1147 >gi|228928263|ref|ZP_04091304.1| hypothetical protein bthur0010_29620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228831310|gb|EEM76906.1| hypothetical protein bthur0010_29620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 436 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSNANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|229101327|ref|ZP_04232071.1| hypothetical protein bcere0019_5060 [Bacillus cereus Rock3-28] gi|228682032|gb|EEL36165.1| hypothetical protein bcere0019_5060 [Bacillus cereus Rock3-28] Length = 411 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 189 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAMDISTISKECRRLSKLVSNLLLLA 248 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + D + I + + ++V + ++++ Sbjct: 249 RSDSNQIEMDKKTFEMGKLLEEIVDPYKEIASYQEKEMILKVERNMSFMGDRERIHQMMV 308 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 309 ILLDNAMKYTNEGGHIRIDCTQTSSSICIQVKDDGIGVKVEDIPKLFDRFYQGDKARSTS 368 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++L E +L K Sbjct: 369 EGAGLGLSIAKWIVEKHYGKILVESKWGEGTCFEVVLPK 407 >gi|229095220|ref|ZP_04226212.1| hypothetical protein bcere0020_4770 [Bacillus cereus Rock3-29] gi|229114168|ref|ZP_04243589.1| hypothetical protein bcere0017_4700 [Bacillus cereus Rock1-3] gi|228669188|gb|EEL24609.1| hypothetical protein bcere0017_4700 [Bacillus cereus Rock1-3] gi|228688079|gb|EEL41965.1| hypothetical protein bcere0020_4770 [Bacillus cereus Rock3-29] Length = 400 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 178 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAMDISTISKECRRLSKLVSNLLLLA 237 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + D + I + + ++V + ++++ Sbjct: 238 RSDSNQIEMDKKTFEMGKLLEEIVDPYKEIASYQEKEMILKVERNMSFMGDRERIHQMMV 297 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 298 ILLDNAMKYTNEGGHIRIDCTQTSSSICIQVKDDGIGVKVEDIPKLFDRFYQGDKARSTS 357 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++L E +L K Sbjct: 358 EGAGLGLSIAKWIVEKHYGKILVESKWGEGTCFEVVLPK 396 >gi|229160352|ref|ZP_04288350.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803] gi|228623076|gb|EEK79904.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803] Length = 466 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 19/215 (8%), Positives = 59/215 (27%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V LI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTHLIHKEADRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + + + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRIATNLDPEIIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQNGDIIITLEKIDDYCELKIKDTGIGIDIEHLDNLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + H + + E + + L+ Sbjct: 424 GLGLAIVRQIVHIHDGQWSIESEKGNGTTVIIKLK 458 >gi|167747901|ref|ZP_02420028.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662] gi|167652632|gb|EDR96761.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662] Length = 814 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 28/234 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 ++ M L + + H+I +P+ A+ ELL + + + + + S+ Sbjct: 317 SKNQRRIAEMKSAFL--ANMSHEIRTPMNAVTGVSELLLREDLSAKQREYVNTIAHSSNS 374 Query: 63 RLKFMRLAFGYTG--------------SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTG 106 L + ++ + + + + V + + Sbjct: 375 LLSVINDILDFSKIESGKFTLIEEEYSLRSLITDITALTVLKIGAKPVCFYIDLDEKLPA 434 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163 +I++NL A +G +++ + +++ G R + Sbjct: 435 FLYGDMTRVKQIMVNLLGNAVKFTEQGHICLRLSGRIENGDFWLVMTVEDTGIGIRKQD- 493 Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 ++ + + LA + + E + +A Sbjct: 494 MDRLFHSFEQVDTHHSHSTGGTGLGLAISRNLAEMMEGSIDVESVYGEGSSFTA 547 >gi|149916635|ref|ZP_01905137.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149822352|gb|EDM81741.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 511 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 20/230 (8%), Positives = 52/230 (22%), Gaps = 26/230 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 ++ + L S + H+I +P+ I + EL + + E +L +R Sbjct: 281 QKLEAIGTLASGVAHEINNPVQGIMSYAELVAQDPDLPSETTELAAEIVQECERVKTIVR 340 Query: 69 LAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + + +++ E +S + ++ Sbjct: 341 NLLTFARREAVGCEPTSLRAVVDATFSLIRAVLRHDHVVLEIDVPEELPRVSCDPQQLRQ 400 Query: 121 NLFMVAHASLPRGGKVTISVQDSK--------------NENIFSLKINGNLARFPEKFTQ 166 L + + K + G E + Sbjct: 401 VLMNLITNARDALNLRYPGHDPDKRLRVGARVVEVEGRPFAELGVVDRGAGM-AAEVRER 459 Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + + + ++ + L Sbjct: 460 IFDPFFTTKGEGQGTGLGLSVTHNIVRDHGGHIQVHSELGSGTRFEVRLP 509 >gi|172064664|ref|YP_001812314.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171998149|gb|ACB69065.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 829 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 ++ + S A+ + I H+I +P+ I +SLELL + ++ + ++ Sbjct: 323 RSRVAAVRSERDKAMFVAFISHEIRTPMHTILSSLELLQRSKLPPKLTSRADAAVAASES 382 Query: 63 RLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106 L + Y+ + V + V Sbjct: 383 LLTLLDDILEYSRLESHNVTLALEPTPVVPWAQHCADMVRWRVDEKQLDLAVELACARTL 442 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFP 161 + +I+LNL + A D + ++ G P Sbjct: 443 CVLIDPARTRQIVLNLLVNAIKFTSAGSIALRVDYLDVKPDQLGSLVIEVRDTGIGI-SP 501 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + L + + D + + +L Sbjct: 502 ESQRRIFEPYQRVEQAGNRRVAGSGLGLSICRELVELMEGVITVSSNPDKGTIFTVILP 560 >gi|115377380|ref|ZP_01464585.1| sensory box histidine kinase/response regulator, putative [Stigmatella aurantiaca DW4/3-1] gi|115365591|gb|EAU64621.1| sensory box histidine kinase/response regulator, putative [Stigmatella aurantiaca DW4/3-1] Length = 1222 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 20/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------M 50 + + L AL + S I HD+ + + A+ LE+L M Sbjct: 845 LEQARAALARQEHLRALGEMSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLM 904 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSW 104 Q++ + +F R F + L G+ + ++++ Sbjct: 905 QIVSDAGTRVRHLQEFSRQRFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIEN 964 Query: 105 TGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + + LNL + A ++P GG V + ++ + +++ G Sbjct: 965 EVPVLPAVNGEAADLRYVFLNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQ 1024 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L V + Sbjct: 1025 DHLDSIFLPFFTTKGAQGTGLGLSMAYGVVSRAGGTLTAANRPKGGAVFTLTFP 1078 >gi|110635898|ref|YP_676106.1| periplasmic sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110286882|gb|ABG64941.1| periplasmic sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 589 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 75/246 (30%), Gaps = 36/246 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M K + + +++ + + H++ +P+ ++ +++E L + + +M++I+ Sbjct: 345 MTKALYARIEAIES---FAADVAHELKNPLTSLGSAVETLPLAKDERSRERLMEIIQHDV 401 Query: 58 MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104 + A + +D L D+ +D + K+V + + Sbjct: 402 RRLDRLITDISDASRLDAEFAREDSEIIDLQKFLRDLVAGAQDAGSKKKKVDIQFKTEGK 461 Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF 160 + +++ NL A + +P G S+ I ++ NG Sbjct: 462 AGQSFVVQGHDLRLGQVVTNLIENARSFVPDEGGRVTITLSRSQRRIIITVDDNGPGI-R 520 Query: 161 PEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HNVV 208 + +I + + + + L E I Sbjct: 521 ADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGAKPGEVRGAR 580 Query: 209 LSALLE 214 L Sbjct: 581 FVISLP 586 >gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1079 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 + K + + SR+ H++ +P+ AI+ +L+ + + D+ ++ Sbjct: 688 LKKARKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSSRKNPLNDKHRSMVEQID 747 Query: 58 MSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + L+ + VD + + ++ + S G Sbjct: 748 GAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLPLLHSLAEQHQVTFHSCCG 807 Query: 107 EKIDL-----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLAR 159 E+ ++L+NL A GG VTI VQ ++ F + NG Sbjct: 808 EQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDVTIHVQANEPTGFLRFQVIDNGLGI- 866 Query: 160 FPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 EK Q+ I+ I L ++ E L Sbjct: 867 AEEKQKQLFVPFARLAQDSENIEGTGIGMTITKQLVEAMGGQIDFESRYGQGSTFWFTLP 926 >gi|329901031|ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9480] gi|327549278|gb|EGF33854.1| Transporter [Oxalobacteraceae bacterium IMCC9480] Length = 604 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 65/233 (27%), Gaps = 20/233 (8%) Query: 1 MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54 + + + L + + + H++ P+ AI + L+ L Sbjct: 364 LRTTQDELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVTFLERGQPAQASANLAH 423 Query: 55 ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT 105 + F R + G V+ + +++ ++ ++ Sbjct: 424 ISAASARMGVIIGQLKGFARKSHGSVALVELTPSVHASALLLQAEFDRLGVVLQLDIAGP 483 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEK 163 + + ++L+NL A ++ + + SV + + ++ +G + Sbjct: 484 LQITGDAVRLEQVLINLLRNALDAVEEAPQRHVALSVAREGDHALICVRDSGPGI-PDDV 542 Query: 164 FTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + + + +L + L Sbjct: 543 AAQLFAPFFTTKPSGKGLGLGLAISSSIVQAMRGQLSAHNLPGGGAEFQLRLP 595 >gi|262370176|ref|ZP_06063503.1| sensor protein [Acinetobacter johnsonii SH046] gi|262315215|gb|EEY96255.1| sensor protein [Acinetobacter johnsonii SH046] Length = 522 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 10/222 (4%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----R 54 A+ I + + L AL L + I H+I +P+ AI + EL+ + E++ + Sbjct: 298 AQKINQRVQQLKLAALGQLSASIAHEIRNPLAAITQANELMQLNDPQQELLHNMIAKQAS 357 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L R Y +D L + ++S + ++ Sbjct: 358 RIDKIIGDTLNMARSKETYPTLIDVASFLERFIVEDLPDVKDQIDYRISDQAQIQFDEQQ 417 Query: 115 RAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++L+NL A + I V KN + G ++ T + Sbjct: 418 LRQVLINLIRNAIRHNAAEAEHIHIRVYSYKNLVHIDVCDFGEGVATQDQST-LFQPFFS 476 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++I+ + Y N+ +L + + Sbjct: 477 TSINGTGLGLYLSHSFCEANQAKLYY-VEQKIGACFRIECPR 517 >gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 531 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 58/240 (24%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57 +A+ + + + H++ SP+ A+ ELL + + D + + Sbjct: 284 LAETNRQLQETDRIKDEFLANTSHELRSPLTAVIAFTELLMDESSGELNDLQRDYVHEIN 343 Query: 58 MSAIIRLKF---------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 S L + + + + + + Sbjct: 344 DSGRELLGMINGFLDLSKIAAGKTFLYREHFKIDELIEDIFLRMRHLFNNKGITLEVARN 403 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A V + DS + I +++ G Sbjct: 404 KNQLPVWADRGKTGQVLTNLLSNALKFTTTGGKVVVESNSGDSGRDVIITVRDTGIGIDI 463 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I I L + + + + + L Sbjct: 464 RD-QEKIFQPFYQVDGTSTRNYGGMGIGLNLAKKLVELHGGTIRVSSQQNAGSIFTFTLP 522 >gi|225862543|ref|YP_002747921.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|225785877|gb|ACO26094.1| sensor histidine kinase [Bacillus cereus 03BB102] Length = 416 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + I + + ++V + ++++ Sbjct: 254 RSDSNQIEMDKKIFEMDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSTS 373 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E +L K Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESRWGEGTCFEVILPK 412 >gi|191637827|ref|YP_001986993.1| Sensor protein (Fragment) [Lactobacillus casei BL23] gi|239631191|ref|ZP_04674222.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065952|ref|YP_003787975.1| signal transduction histidine kinase [Lactobacillus casei str. Zhang] gi|190712129|emb|CAQ66135.1| Sensor protein (Fragment) [Lactobacillus casei BL23] gi|239525656|gb|EEQ64657.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438359|gb|ADK18125.1| Signal transduction histidine kinase [Lactobacillus casei str. Zhang] gi|327381893|gb|AEA53369.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus casei LC2W] gi|327385054|gb|AEA56528.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus casei BD-II] Length = 555 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 21/225 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + H++ +P+ AI E L ++ D + +I S + Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKNDPATLDRFLGIIYDESKRLTQLI 383 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRER 115 + + + + + V + + K +Q ++ + R+ Sbjct: 384 NDILTLSRPDSNQNVAASVALKKLVDDALHNLAKVIQDKQIRVEVAITPDLLVVTDERKL 443 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I+ NL A G VTIS Q ++ ++ G E +I + Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLSLAVADTGIGISETE-QARIFERFYRVD 502 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + L Sbjct: 503 KARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLP 547 >gi|13474248|ref|NP_105816.1| two-component sensor histidine kinase ExoS [Mesorhizobium loti MAFF303099] gi|14025000|dbj|BAB51602.1| two-component sensor histidine kinase; ExoS [Mesorhizobium loti MAFF303099] Length = 594 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 75/248 (30%), Gaps = 38/248 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + +++ + + H++ +P+ ++ +++E L +M +I+ Sbjct: 348 MTNALYARIEAIES---FAADVSHELKNPLTSLRSAVETLPLAKNDNSRSRLMDIIQHDV 404 Query: 58 MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 + + A G+VD + D+ V + K V++ Sbjct: 405 RRLDRLITDISDASRLDAELAREDAGTVDLKKFITDLVAVSRETTRNKKAVEIELKVAKL 464 Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLA 158 +++ NL A + +P G +++S+ + NI ++ NG Sbjct: 465 PQGVKGYFVAGHDLRIGQVVTNLIENARSFVPEDHGHISLSLARAGKFNILTVDDNGPGI 524 Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HN 206 + +I + + + + L E I Sbjct: 525 -RADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGTKPGEIKG 583 Query: 207 VVLSALLE 214 L Sbjct: 584 ARFVVTLP 591 >gi|313114103|ref|ZP_07799655.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623512|gb|EFQ06915.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 449 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 23/235 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58 + ++ + + + H++ +P+ +I EL++ + Q I + + Sbjct: 212 SDRILRENNEKMRQEFTANVSHELKTPLTSISGYAELIETGIAKPEDVPGFAQKIHVEAS 271 Query: 59 SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWT 105 I + + + +VD L D + + + + Sbjct: 272 RMIQLVNDILQLSSLDNASEAGSEPEMETVDLLTVAKDCVERQKLNARRAYISLNCLGES 331 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE-- 162 ++ NL A GGKV I+ ++ NG Sbjct: 332 ALVHGNRALLDELCQNLCDNAIRYNRPGGKVQITTACSRDGHCTLTVADNGIGIPKEAQS 391 Query: 163 -KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + V +A + R+ E D ++ Sbjct: 392 SVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESQVDVGTTITVTFP 446 >gi|322420323|ref|YP_004199546.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126710|gb|ADW14270.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1126 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 31/240 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS---LEL-----LDEVGIEDEVMQLIR 54 S + A+ L I HD + + I LEL L + +V+ Sbjct: 742 EEQLRQSQKMEAVGHLAGGIAHDFNNILTVIVGYGNLLELDGSLTLQQREQVGQVISAAE 801 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 S L F R +D +G +++ + I D +Q E++ + + Sbjct: 802 RGSQLTRGLLAFSRKQVMNPRVLDLNALVGQVQKFLLRIIGEDVELQFHPVPEQMKVFAD 861 Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDS---------------KNENIFSLKINGN 156 +++ L + ++P GG ++I + G Sbjct: 862 GSQVEQVLMNLATNSRDAMPDGGVLSIETCWQEIDEAYARSQGYGNPGRYACLMVSDTGI 921 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + V + ++K + L Sbjct: 922 GMDRG-TRERIFEPFFSTKVVGKGTGLGMSIVYGIVKQHKGFINVYSEPGEGTTFKIYLP 980 >gi|227535594|ref|ZP_03965643.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186724|gb|EEI66791.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 555 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 21/225 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + H++ +P+ AI E L ++ D + +I S + Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKNDPATLDRFLGIIYDESKRLTQLI 383 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRER 115 + + + + + V + + K +Q ++ + R+ Sbjct: 384 NDILTLSRPDSNQNVAASVALKKLVDDALHNLAKVIQDKQIRVEVAITPDLLVVTDERKL 443 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I+ NL A G VTIS Q ++ ++ G E +I + Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLSLAVADTGIGISETE-QARIFERFYRVD 502 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + L Sbjct: 503 KARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLP 547 >gi|227514442|ref|ZP_03944491.1| histidine kinase [Lactobacillus fermentum ATCC 14931] gi|227087192|gb|EEI22504.1| histidine kinase [Lactobacillus fermentum ATCC 14931] gi|299782928|gb|ADJ40926.1| Sensor protein [Lactobacillus fermentum CECT 5716] Length = 500 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 60/219 (27%), Gaps = 22/219 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR--------- 63 + + H++ +P+ I+ LE L + +QL++ + I Sbjct: 265 QFMADVAHEMRTPLTTINGLLEGLAYDAIPEEDKMHSIQLMQNDTKRLIRLVNDNLNYEK 324 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + + L L D + + ++ V + +I+ N Sbjct: 325 IRTNQISMERKVFDAAAVLENLRDQLRKKAAANKDELKLVVPDSIPVYADYDRFVQIMFN 384 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES---T 175 + A G++TIS Q + G + + + + Sbjct: 385 IIQNAIQFTTG-GQITISAQRVAQGTEVKVADTGIGMTEEQVQNIWERFYKADRSRMNSQ 443 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + ++ + + Sbjct: 444 YGESGLGMAIVRQLVELHGGKIDVDSTYGQGTTFTVFFP 482 >gi|307154954|ref|YP_003890338.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985182|gb|ADN17063.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 373 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQ 51 + I L L + S + H+ +P+ I S +LL+E E + Sbjct: 126 ERAIRVALQKEKELSELKSRFWSMVAHEFRTPMTTILGSAQLLEELHHQISEERRREYLF 185 Query: 52 LIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 LI+ S S L ++ L D Q Sbjct: 186 LIQQSVRSMEQLLNDVLSIGRVEGGSLKFQPAILNLEQFCRDLIDEMQFNAGPNYQIIFQ 245 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR- 159 Q + IL+NL A P GG + +++ E ++ NG Sbjct: 246 QHGDCEHTYLDKKLLRHILVNLLTNAIKYSPEGGHIYLNIFCDHTEIKLQVQDNGIGIPE 305 Query: 160 --FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 F +I + V + ++ ++ Sbjct: 306 ENQHHLFEPFQRAGNVGSIPGTGLGLTMVKKCLDLHGGEIVVNSQVGVGTTITLT 360 >gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 781 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 21/231 (9%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 +S L L + + H++ +P+ I+ +E+L G Q I SA Sbjct: 397 RDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVLRNSGDSALQQQAIDAIDRSARSLT 456 Query: 65 KFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKI 109 + + VD + D + + V + T Sbjct: 457 RMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAASSAGIVLEFDCAASTCVVS 516 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + ++L NL A P GG VT+ + + ++ G Sbjct: 517 GDAERLRQMLSNLVSNALKFTPAGGSVTVGLARDDVRVVLTVSDTGQGIVPAFLPYVFDM 576 Query: 170 GNVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + V +A + + + + + L Sbjct: 577 FRRADDSPASSRRGLGLGLSIVRHIAELHGGSVTVKSAGRNRGATFTVTLP 627 >gi|116494442|ref|YP_806176.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334] gi|116104592|gb|ABJ69734.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334] Length = 555 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 21/225 (9%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64 + + H++ +P+ AI E L ++ D + +I S + Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKNDPATLDRFLGIIYDESKRLTQLI 383 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRER 115 + + + + + V + + K +Q ++ + R+ Sbjct: 384 NDILTLSRPDSNQNVAASVALKKLVDDALHNLAKVIQDKQVRVEVAITPDLLVVTDERKL 443 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172 +I+ NL A G VTIS Q ++ ++ G E +I + Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLSLAVADTGIGISETE-QARIFERFYRVD 502 Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + L Sbjct: 503 KARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLP 547 >gi|301054718|ref|YP_003792929.1| two component system histidine kinase [Bacillus anthracis CI] gi|300376887|gb|ADK05791.1| two component system histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 457 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 220 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 276 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 277 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 336 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 337 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 396 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + ++ E + L Sbjct: 397 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGKITVESELGEGSTFTFKLP 452 >gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 851 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 65/245 (26%), Gaps = 33/245 (13%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50 K L ++A + + H++ +P+ +I EL+ + + Sbjct: 606 KKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIGFSELMLTERRGELNEYQK 665 Query: 51 QLIRLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 + S L + + + + + + + Sbjct: 666 HYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIIDLVNDVSNTMHPQALNKNI 725 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++ ++ + K+ L+ A P GKVT+ V F++K G Sbjct: 726 ELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVTLQVNKLDGNIRFAVKDTG 785 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 +K + + + V + R+ E + + Sbjct: 786 IGI-PEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEMHNGRIWIESEVNKGTAI 844 Query: 210 SALLE 214 + Sbjct: 845 YFTIP 849 >gi|291558759|emb|CBL37559.1| Osmosensitive K+ channel histidine kinase [butyrate-producing bacterium SSC/2] Length = 658 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 23/236 (9%) Query: 1 MAKN-ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56 M K I + L A L I HD+ +P+ +I + ++L E + Q+ Sbjct: 416 MEKEKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDI 475 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSW 104 + + + T D + L + + Sbjct: 476 YDDSEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQIVTECDE 535 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R ++L+NL A P+G + I + + ++ NG E Sbjct: 536 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGI-CDEMK 594 Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + S + + + +L+ E H + S L Sbjct: 595 PHIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNGKLVLEDNTPHGCIFSFTLP 650 >gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] Length = 775 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 54/230 (23%), Gaps = 18/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +AK + + L + + H+I +P+ AI +L E E+E ++ + + S + Sbjct: 536 LAKEEAEESNRIKSAFL--ANMSHEIRTPLNAIVGFSSILAEDVSEEERIEYLSIISKNN 593 Query: 61 IIRLKFMRLAFGYTGSV---------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 I L+ + + + V Sbjct: 594 DILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARMRQPNANVAICAVMPMPD 653 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 R ++L N A G + F + G + Sbjct: 654 LLLYTDQRRITQVLNNFISNAMKFTNTGSITFGYEEPKDGYIRFFVTDTGTGIPPEKVAD 713 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E K + L Sbjct: 714 IFNRFVKLDSFKQGTGLGLAISQNIVKELKGEIGVLSELGKGSTFWFTLP 763 >gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3] gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3] Length = 934 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 62/239 (25%), Gaps = 27/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 +AK + S + + + H++ +P+ I ++ LD ++ L+ Sbjct: 397 LAKAVIKADISNKAKSTFLATMSHELRTPLNGILGMAQIIEPNLDNPEHRKQIQILLESG 456 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSW 104 + + + + G ++ L V+E + + + Sbjct: 457 NHLTSLLNDILDFSKVEQGKLELESELFRFNSVLEPISKTYEPICDEKNIQLIVQNEIDE 516 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARF 160 +++ NL A +G + + ++ G Sbjct: 517 KQCFKGDKSRIRQVIYNLLSNAVKFTEQGSVSLLFKQGVNAEGQQGIEATIIDTGIGI-R 575 Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE+ I D + V L + D + L Sbjct: 576 PERLASIFDPFVQAESSTTRQYGGTGLGLSIVKQLVELMGGTISITSQVDKGTRFAIFL 634 >gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1478 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 22/225 (9%), Positives = 52/225 (23%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 A + + H+I +P+ + ELL + + ++ +S L + ++ Sbjct: 530 AQFLANMSHEIRTPMNGVLGMSELLLTTDLNPRQLDFVKTLQVSGEHLLGVINDILDFSK 589 Query: 76 SV-----------DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAKIL 119 + L D+ + V + +I Sbjct: 590 LEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQIC 649 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN------ENIFSLKINGNLARFPEKFTQIVDGNV- 172 NL + G V + + F+++ G +K + Sbjct: 650 TNLVSNSIKFTESGEVVIRVSVHQELEEQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQV 709 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + L + E + Sbjct: 710 DSSTTRKYGGTGLGLAICKQLVEMMGGEIGVESQLGVGSTFWFTI 754 >gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] Length = 759 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 63/246 (25%), Gaps = 34/246 (13%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 + L A + + + H+I +P+ + EL+ E ++++ Sbjct: 219 RDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYA 278 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VD 97 S S L + ++ + L ++ I V Sbjct: 279 ETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVT 338 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKIN 154 R S +IL N+ A +V+ D + S+ Sbjct: 339 LRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTALRISVTDT 398 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G ++ +I + + + L R+ + V Sbjct: 399 GAGI-PDDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSV 457 Query: 209 LSALLE 214 + L Sbjct: 458 FTIDLP 463 >gi|145220456|ref|YP_001131165.1| PAS/PAC sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145206620|gb|ABP37663.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 515 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 62/241 (25%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 ++ N ++ + L I HD + + + E+ L E + I ++ Sbjct: 130 ESRLRNTQRLETIGTLAGGIAHDFNNILTPMLGYAEMGLSSLAEEDPLHDYFNEIIHAAE 189 Query: 59 SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDL 111 A + F R +V + + +++ I +Q + Sbjct: 190 RAKNLVGQVLTFSRAQESQPTTVHIPTIIEEALKLLRPSIPATITIQKDIDAAARNILAD 249 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSK----------------NENIFSLKING 155 + ++++NL A ++ G + S+ G Sbjct: 250 PSQIHQVIVNLAANAFQAMEESGGILSIKLHEMVPDRQLRRLLPTLQKVTHIHLSITDTG 309 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +I + + + V + K + E L Sbjct: 310 KGMDEATL-ERIFEPFFTTKSVNKGTGLGLSVVHGIITGYKGEITVESSQGKGTTFHVYL 368 Query: 214 E 214 Sbjct: 369 P 369 >gi|220929081|ref|YP_002505990.1| histidine kinase [Clostridium cellulolyticum H10] gi|219999409|gb|ACL76010.1| histidine kinase [Clostridium cellulolyticum H10] Length = 594 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 54/228 (23%), Gaps = 24/228 (10%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAI 61 S L L + + H+ +P+ I S+E L + + + + S Sbjct: 365 ESERLEQLRKDFVANVSHEFRTPLTVIKGSIEALIDGTIDNKEDIERYYGRMLSETKSLQ 424 Query: 62 IRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + ++ Sbjct: 425 RLVGDLLELSRLQSGKISVNNELVHIPSLLSDITKSMQTIAIMKEISIVYTPINDVPAVS 484 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++ + A P+ K+ S++ +G E + + Sbjct: 485 GDYDRLRQLFVIFIDNAIKYSPQKT-EIHIRAAVKSTLEISIEDHGYGISEEELPYVWDR 543 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L +K ++ + ++ L Sbjct: 544 FYKTDKSREGGGTGLGLAIAKHLIKLHKGSVIIKSSLGKGTTVTVSLP 591 >gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 921 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 34/246 (13%) Query: 1 MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 MA + + + A L + H+I +P+ A+ LL E ++ E + Sbjct: 414 MANALRARNDAAEAATRAKSAFLA-NMSHEIRTPLNAVIGMAALLQESRLDQEQRIFVDT 472 Query: 56 SSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIA-----VDKR 99 L + ++ D L ++ + Sbjct: 473 IRTGGEALLAVISDILDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAYTKNLAMTCH 532 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKIN 154 + + +ILLNL A + + E F ++ Sbjct: 533 IAPDVPQIVQGDAARLRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGVEITFQVRDT 592 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G E+ ++ + L H + H + Sbjct: 593 GIGM-SAEQLERVFAPFVQADSSTARRYGGTGLGLAISQQLVHLMGGTISATSSLGHGSI 651 Query: 209 LSALLE 214 S L Sbjct: 652 FSLNLP 657 >gi|297180418|gb|ADI16634.1| signal transduction histidine kinase [uncultured delta proteobacterium HF0010_01J10] Length = 692 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 55/230 (23%), Gaps = 24/230 (10%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAII 62 L A + + H++ SPI I E L + I + Sbjct: 455 ELDEARQKADFAAIVSHELRSPITQIRLKGEALQLDLTVDDQDRQAHYDAIVAQAERLSR 514 Query: 63 RLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + A L RV V ++ Sbjct: 515 LVDNVLDFASIERGSKTYAIKSVALKPLLTLTARTMADEARAAGAPLRVNVPDHLPRVMC 574 Query: 112 SRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 R+ +++LNL A GG +T+ Q + ++ NG E +I + Sbjct: 575 DRDAITQVVLNLISNAIKYGASGGVITLEAQLAPKGVRVAVADNGQGI-PKESQDRIFEH 633 Query: 171 NVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + + L Sbjct: 634 YYRVASTSVRKKRGTGIGLTIVRYIVEAHGGNIGVTSSPGEGATFHFTLP 683 >gi|295689378|ref|YP_003593071.1| signal transduction histidine kinase, nitrogen specific, Ntrb [Caulobacter segnis ATCC 21756] gi|295431281|gb|ADG10453.1| signal transduction histidine kinase, nitrogen specific, NtrB [Caulobacter segnis ATCC 21756] Length = 376 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 29/221 (13%) Query: 21 RICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + H+I +P+ I + +LL + + ++ F A Sbjct: 143 MLAHEIKNPLAGIRGAAQLLKTGASAVDQPLAQLIVDETDRIRRLVDRMEAFSDNAPTPR 202 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLP 131 V+ L + ++ + +A +++ S+ + + ++ LNL A + Sbjct: 203 EPVNIHQVLDRVRALVANGVADGLQLKESYDPSLPPVWGDEDHLIQVFLNLTKNAAEAAH 262 Query: 132 RGGKVTISVQDSKNE------------------NIFSLKINGNLARFPEKFTQIVDGNVE 173 G ++ + NG + V Sbjct: 263 MRGDGRGAISIHTAWRPGVRVRGADGKTSSGAPIEVRVVDNGPGVPTT-LRDHLFQPFVT 321 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L + + E V LL Sbjct: 322 TKANGTGLGLALVTKLVTAHGGLIDFESEPGR-TVFRVLLP 361 >gi|260663096|ref|ZP_05863988.1| two-component histidine kinase [Lactobacillus fermentum 28-3-CHN] gi|260552288|gb|EEX25339.1| two-component histidine kinase [Lactobacillus fermentum 28-3-CHN] Length = 500 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 22/219 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR--------- 63 + + H++ +P+ I+ LE L + +QL++ + I Sbjct: 265 QFMADVAHEMRTPLTTINGLLEGLAYDAIPEEDKMHSIQLMQNDTKRLIRLVNDNLNYEK 324 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + + + L L + + + ++ V + +I+ N Sbjct: 325 IRTNQISMERKVFDAAAVLENLREQLRKKAAANKDELKLVVPDSIPVYADYDRFVQIMFN 384 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES---T 175 + A G++TIS Q + G + + + + Sbjct: 385 IIQNAIQFTTG-GQITISAQRVAQGTEVKVADTGIGMTEEQVQNIWERFYKADRSRMNSQ 443 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + ++ + + Sbjct: 444 YGESGLGMAIVRQLVELHGGKIDVDSTYGQGTTFTVFFP 482 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + + + L + + H++ +P+ AI E + E + + +Q I Sbjct: 1384 LRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQKQALQTIE 1443 Query: 55 LSSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWT 105 S+ + + + +D + + + V Sbjct: 1444 RSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGISINVQIP 1503 Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKING 155 DL + ++L+NL A P GK + K+ F++ G Sbjct: 1504 QALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRFAVIDTG 1563 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E+ +++ + + V + + + Sbjct: 1564 IGIN-EEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVGSGSQF 1622 Query: 210 SALLE 214 + Sbjct: 1623 IFEIP 1627 >gi|182414885|ref|YP_001819951.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842099|gb|ACB76351.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1222 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 79/241 (32%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 M K ++ + L S + HD+ + + I S+ELL + + +++QL+ S+ Sbjct: 830 MEKQF-LRAQRIESLGALASGVAHDLNNVLTPILMSVELLRPLAQNQADRDMLQLLSDSA 888 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111 ++ + L + S + + I + + ++ T Sbjct: 889 RRGSDIVQQLLLFGRGSESPRVPLNVAGILKDTGRLMRETFPKKIVQTVYAPADLRLVEA 948 Query: 112 -SRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155 + +++LNL + A ++P GG+ + + + +++ G Sbjct: 949 DRTQIHQVVLNLCVNARDAMPEGGRLQITAENVEVEEELAQRHAAKGAGRYVRITVRDTG 1008 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PE +I D + + V+ + + + + L Sbjct: 1009 AGI-SPENLDKIFDPFFTTKPVGQGTGLGLATVLGIVRGHGGFVDVKSQLGRGAAFEVYL 1067 Query: 214 E 214 Sbjct: 1068 P 1068 >gi|167765965|ref|ZP_02438018.1| hypothetical protein CLOSS21_00456 [Clostridium sp. SS2/1] gi|167712322|gb|EDS22901.1| hypothetical protein CLOSS21_00456 [Clostridium sp. SS2/1] Length = 658 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 23/236 (9%) Query: 1 MAKN-ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56 M K I + L A L I HD+ +P+ +I + ++L E + Q+ Sbjct: 416 MEKEKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDI 475 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSW 104 + + + T D + L + + Sbjct: 476 YDDSEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQIVTECDE 535 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R ++L+NL A P+G + I + + ++ NG E Sbjct: 536 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGI-CDEMK 594 Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + S + + + +L+ E H + S L Sbjct: 595 PHIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNGKLVLEDNTPHGCIFSFTLP 650 >gi|192289016|ref|YP_001989621.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282765|gb|ACE99145.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 913 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51 ++ + + A+ L + HD+ + + I +E+L + + + Q Sbjct: 523 KESERQLRQAQKMQAIGQLTGGVAHDLNNILTVITGGIEILADGVSDRPGLKDVAAMVDQ 582 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + +S L F R S+D + D +++ + + V + Sbjct: 583 AVTRASDLTHGLLSFSRKQPLQPRSIDVNALMLDTVKLLRPTLGAGIEIDVEPAPDLRPA 642 Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153 + +++ L A ++ GK + + ++ Sbjct: 643 LADPSQLGSALINLAINARDAMKGNGKLLLETGNVDLDQAYAAQHDEVSAGRYVMLAVSD 702 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G ++ + + + + V ++ + + H + Sbjct: 703 TGCGIPAS-IRDRVFEPFFTTKAVGEGTGLGLSMVYGFVKQSGGHIELYSEEGHGTTIRL 761 Query: 212 LLE 214 L Sbjct: 762 YLP 764 >gi|75910179|ref|YP_324475.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703904|gb|ABA23580.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 811 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 53/248 (21%), Gaps = 39/248 (15%) Query: 5 ICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 L A L + + H++ +P+ I ++L E Q Sbjct: 323 EQAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSKLPEQEQHHINI 382 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------- 103 L + +++ E V Sbjct: 383 IEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFIYE 442 Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGG--------KVTISVQDSKNENIFSL 151 ++ ++LLNL A G + + + + + + + Sbjct: 443 PASNLPTWVHIDAKRLRQVLLNLLGNAIKFTDHGQVKLKVETIEESSNQKPVNHRIRYCI 502 Query: 152 KINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + G E +I + + + L + Sbjct: 503 EDTGIGITDAELS-KIFLPFEQVGEKKRQTEGTGLGLAITRQLVQMMGSDIHVTSQVGKG 561 Query: 207 VVLSALLE 214 LE Sbjct: 562 STFWFELE 569 >gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response regulator hybrid transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 676 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 72/234 (30%), Gaps = 23/234 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S + + + H++ +P+ A+ +LL ++ + + + + Sbjct: 288 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 345 Query: 62 I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108 + ++ +G V I + + + + +A K++ V Sbjct: 346 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQITVDTEYLPVP 405 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163 + ++ NL A P GG V I+VQ + + +++ G P Sbjct: 406 LLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVATVRDTGIGIEPTFLPHV 465 Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 F + + + L + + D ++ L Sbjct: 466 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHITAASSGADLGTTMAVTLP 519 >gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] Length = 711 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 21/235 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + D + +++ H+I +P+ I ++L E + E + S Sbjct: 195 LEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSETDLTPEQDSYVSTMVRSG 254 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104 L + ++ + D+ Q++ A V Sbjct: 255 DALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGLMLYSDVAPDL 314 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + +IL+N+ A G + + + + +G ++ Sbjct: 315 PEIMLGDAGRLRQILVNIAGNAVKFTLEGHVALRASAGGPGQIVIRVHDSGVGIPSDQQD 374 Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L L + L Sbjct: 375 KVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTRFDITLP 429 >gi|317056208|ref|YP_004104675.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] gi|315448477|gb|ADU22041.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] Length = 477 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 28/235 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58 + +N F L + + HD+ +P+ I E++ + E + + + + Sbjct: 250 LKQNKEFQNE-------LLANVSHDLRTPLTMIKGYAEMIRDISHEDEQQCAEDVAVIVR 302 Query: 59 SAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 A +K + + + + + + V+ Sbjct: 303 EADRLTALVGEILEYSELQMKESEDILTDCDLSEVVNSVTENFESLFSKDGYIFERSVAE 362 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 S + + NL A + + ++++ N+ + + +G E Sbjct: 363 NIHVRGNSSRLTRAVYNLIDNAVRHIGDDKWIGVTLKAENNKAVIEIADHGEGIPADEL- 421 Query: 165 TQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I D + + V ++ V L K Sbjct: 422 ERIWDKYYTNRQRGGKGVSGLGLAIVKQTVTQHGGLCSAVSEVGAGSVFRIELAK 476 >gi|291524415|emb|CBK90002.1| Signal transduction histidine kinase [Eubacterium rectale DSM 17629] Length = 440 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 19/222 (8%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 L++ + + H++ +P+ AI EL++ +E E RL + Sbjct: 217 LAAAKSRQDFTANVSHELKTPLTAISGYAELIENGMVEKEQQIHFATEIRRNAQRLLSLI 276 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRE 114 +DS EQ+ + D + + Sbjct: 277 NDIIKLSELDSSEAQQGFEQLDLYGLVKDCMENLQVNAEQRKVALNFDGTDCMVRGNRQL 336 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 +++ NL A GG V ++V + + +++ NG + F + + Sbjct: 337 LTELVENLCQNAIRYNNEGGTVNVTVHKLGGKTVLTVEDNGIGIPKDQQERVFERFYRVD 396 Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V + + L + + Sbjct: 397 KSRSKETGGTGLGLAIVKHIVELHDAGLTLDSEVGRGTTIKV 438 >gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 918 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 57/237 (24%), Gaps = 28/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + + + + H+I +P+ AI EL + D+ + + +A Sbjct: 403 AKTQAEAANKAK--SEFLANMSHEIRTPMNAIIGFNELCLRTQLSDKQKDYLTKAGSAAQ 460 Query: 62 IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKI 109 L + + + ++ +I + + V Sbjct: 461 SLLHIINEVLDLSKIEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHVDLDEHIE 520 Query: 110 DLS-----RERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160 +ILLNL A +G E F+++ +G Sbjct: 521 QYPLRGDPMRLQQILLNLCSNAIKFSTQGSISIRCQLGAISGQAVELKFAVQDSGIGISP 580 Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + L R+ E Sbjct: 581 AQLGLLFKPFSQADSSTTRRFGGTGLGLSICRGLVERMGGRIWVESEPGIGSTFCFT 637 >gi|225573641|ref|ZP_03782396.1| hypothetical protein RUMHYD_01835 [Blautia hydrogenotrophica DSM 10507] gi|225039009|gb|EEG49255.1| hypothetical protein RUMHYD_01835 [Blautia hydrogenotrophica DSM 10507] Length = 882 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGI 45 + + L A L I HD+ +P+ +I + L ++ Sbjct: 641 REEAAVLAKNEQLRADLLRAISHDLRTPLTSISGNASNLLFNSEDFDKETKKGLYKDIYE 700 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + + +S + +D +I V Sbjct: 701 DSLWLINLVENLLSVSRIEEGRMNLRLSAELMDEVISEALQHVNRRSIEHVIVVENSDDI 760 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +R ++++N+ A PRG +TIS + + +G E + Sbjct: 761 LLARIDARLIVQVVINIVDNAIKYTPRGSHITISTVQTGQIITVKISDDGPGM-DDEVKS 819 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + S + + H + + + V S L Sbjct: 820 HVFDMFYTGSNKVADSRRSLGLGLSLCRSIIHAHGGEITVKDNQPQGTVFSFTLP 874 >gi|94502158|ref|ZP_01308657.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Oceanobacter sp. RED65] gi|94425705|gb|EAT10714.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Oceanobacter sp. RED65] Length = 629 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 53/238 (22%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + + + + H++ +P+ I LL + + + I+ +SA Sbjct: 245 LKQADAYEKQQQKYKDQFVASVSHELRTPLNGILGLTNLLVKQNPNSKKSKTIQKIHLSA 304 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 + VD + V+ + + Sbjct: 305 QMLLDVVNEILDYSKIQSGKFNIELIPVDIQTDFNHVFSVLTHLAHNKDIDFHIFIDPNI 364 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160 + +++ NL A +G V + ++ F G Sbjct: 365 RTRVLSDPLRLQQVINNLCSNAIKFTNQGKVVASIDIEDESVDSLTLHFKFMDTGIGISD 424 Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +V + + + + E L Sbjct: 425 DALPHLFEAFKQSDDSVTRQYGGTGLGLFISQQIVKALGGHIEVESRLGGGSTFEFTL 482 >gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 605 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 28/239 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56 +A+ + + + H++ +P+ AI +++ + + +L Sbjct: 334 LARTAAERADAAK--TRFLATMSHELRTPLNAIIGFSDMIVQEATLPLDATRRKEYAQLI 391 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101 + S L + + + + + + Sbjct: 392 NDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLSGSNLLALKARDNDIELVTRV 451 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + R +I+LNL A RGG+VTIS + + + NG Sbjct: 452 PENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLRVVDNGVGIAQE 511 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I D + + + V L + + + + ++ +L Sbjct: 512 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGEIDVQSKVEEGTTVTVMLP 569 >gi|317494185|ref|ZP_07952601.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917958|gb|EFV39301.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 593 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 78/231 (33%), Gaps = 18/231 (7%) Query: 1 MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + + + L L L + + H++ +P+ AI ++ L + + + ++ I + Sbjct: 355 LTEQKEMQRHIAQAERLATLGELMAGVAHEVRNPLTAISGFIQYLKQGESDPQRIEYIDI 414 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 K ++ + L I Q+I++ + + + V+ + E Sbjct: 415 IIHEVRSINKVIQQLLDFARPQSRLFQEVSINQIIKETLVLVQTNGVNSRIDFSISLDET 474 Query: 116 -----------AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ LNL + A S+P + + + + ++K G + Sbjct: 475 LPALEVDASGLKQVFLNLLINAVQSIPAKGEISIETTRLTMEKIQITIKDTGGGM-SDDV 533 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + V + +++ ++ E + +L Sbjct: 534 QKKIFMPFFTTKSQGTGLGLSIVQRIINDHSGDVIIESKIHQGTKVMIILP 584 >gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 953 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/249 (9%), Positives = 60/249 (24%), Gaps = 36/249 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54 + K + + L + + H++ +P+ I E L E + + + +I Sbjct: 556 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNSNQHHAIAMIE 615 Query: 55 LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105 S + + + Y V + ++++ Sbjct: 616 KSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAFTKQINIEINIP 675 Query: 106 GE-----KIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSL 151 +R ++L+NL A + + + FS+ Sbjct: 676 QALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAAISTPQSIYFSV 735 Query: 152 KINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 NG + ++ + V + + + Sbjct: 736 IDNGIGIAPDDLN-KLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGK 794 Query: 206 NVVLSALLE 214 + L Sbjct: 795 GSCFTVYLP 803 >gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 549 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/249 (9%), Positives = 60/249 (24%), Gaps = 36/249 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54 + K + + L + + H++ +P+ I E L E + + + +I Sbjct: 152 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNSNQHHAIAMIE 211 Query: 55 LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105 S + + + Y V + ++++ Sbjct: 212 KSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAFTKQINIEINIP 271 Query: 106 GE-----KIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSL 151 +R ++L+NL A + + + FS+ Sbjct: 272 QALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAAISTPQSIYFSV 331 Query: 152 KINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 NG + ++ + V + + + Sbjct: 332 IDNGIGIAPDDLN-KLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGK 390 Query: 206 NVVLSALLE 214 + L Sbjct: 391 GSCFTVYLP 399 >gi|326203106|ref|ZP_08192972.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325986752|gb|EGD47582.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 594 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 18/228 (7%), Positives = 53/228 (23%), Gaps = 24/228 (10%) Query: 10 SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAI 61 S L L + + H+ +P+ I S+E L++ + I + Sbjct: 365 ESERLEQLRKDFIANVSHEFRTPLTVIKGSIEALNDGAIEKKEDIERYYSRILSETKILQ 424 Query: 62 IRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + + + + Sbjct: 425 RLVGDLLELSRLQSGKISVNEEKVHIPSLLSDVTKSMQTIAVKKQISIEYSPIEAVPPVL 484 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166 ++ A P K++I + + G E + + Sbjct: 485 GDYDRLRQLFTIFIDNAIKYSPEKTKISIEIAVKGT-LEIKIADKGYGISEEELPYVWER 543 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + + + + ++ L Sbjct: 544 FYKTDKSRESNGTGLGLSIAKHLIQLHGGNVTMQSSLEEGTTVTVYLP 591 >gi|253700434|ref|YP_003021623.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775284|gb|ACT17865.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 773 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 66/243 (27%), Gaps = 29/243 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 +A + M+ + L I HD + + I+ LL D+ + + I + Sbjct: 378 LAIEQLRQVQKMEAIGRLAGGIAHDFNNLLTVINGYSTLLVRSLDKGSPTHKEAEQILRA 437 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKI 109 A + + ++ + + ++ + + G Sbjct: 438 GERAADLTRQLLSFSRRQIMEPRVLNINKQVRAVQKMLERLIGEHIGLVTTLSEDAGFVK 497 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154 + +I++NL + A + G + +S + + S+ Sbjct: 498 MDPGQMEQIVMNLIVNARDASETGAVIAMSTDNVDLDQNFSHLHPGSVPGSYVRLSVADQ 557 Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G E + + + + V + ++ + + Sbjct: 558 GQGM-TEEVKQHLFEPFFTTKEMGRGTGLGLATVYGIVKQSGGYIEVVSEPGRGACFNIY 616 Query: 213 LEK 215 L + Sbjct: 617 LPR 619 >gi|168187267|ref|ZP_02621902.1| sensor histidine kinase [Clostridium botulinum C str. Eklund] gi|169294809|gb|EDS76942.1| sensor histidine kinase [Clostridium botulinum C str. Eklund] Length = 733 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 65/231 (28%), Gaps = 19/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 +N + + + + I HDI + + I S+ELL + ED+V+ Sbjct: 359 RNKFIENEKLKNMGEMAAGIAHDINNILTPIIGSVELLKDKYNEDKVISKQLKVIEMCTY 418 Query: 63 RLKF----------MRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVS 103 + + + + D + ++ ++ + Sbjct: 419 DVTNIISKLKKLTVSCSSNDMIDIFNVNEVILDAIALTKNKWLNGSILDGVKINIFTNLD 478 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E ++++N+ A ++ + G++ IS D + + ++ NG + Sbjct: 479 SNERIQGNITEIREVIINIISNAVDAIEKDGQIRISTVDKDDYVVIEIEDNGVGINEGIE 538 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L Sbjct: 539 NRIFQPFFTTKGKKGSGLGLSIAYKIIQSIGGNIRCKSAKNKGTKFIIKLP 589 >gi|149278122|ref|ZP_01884261.1| sensor for ctr capsule biosynthesis; sensor histidine kinase [Pedobacter sp. BAL39] gi|149231320|gb|EDM36700.1| sensor for ctr capsule biosynthesis; sensor histidine kinase [Pedobacter sp. BAL39] Length = 815 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR-LSSMSAIIRLKFMRLAFG 72 S + H++ +P+ ++ ++LL ++ + + + F+ ++ Sbjct: 598 SMVSHELKTPLTSLKGYVQLLNMRSKKEDNEFAVSNLNKVELQIKKMTAMINSFLNVSRL 657 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------EKIDLSRERAKILLNLFM 124 +G + + DI Q+I + I ++ S + ++L NL Sbjct: 658 ESGKIHVNMEQFDIGQLISEVIEDAYQIYSSHELNLIPAEPLMVFADREKIEQVLTNLLS 717 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178 A PRG VTIS ++ + G R + ++ D I Sbjct: 718 NAVKYSPRGKTVTISYTLRDDQVEVCVSDEGMGIRTQD-KDRLFDRFYRVDSTHTQNISG 776 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I Y L + R+ E + Sbjct: 777 FGIGLYLCAELIRRHDGRIWVESQKGVGSQFYFSIP 812 >gi|94264434|ref|ZP_01288223.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455124|gb|EAT05346.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 704 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS----- 56 K+ F S+ +L + HD+ P+ I++ + LL+ + + + Sbjct: 467 EKSAEFQRSNAELE-QFAYVVSHDLRQPLRMINSYMGLLERDLNDKLTDETREMMGFAVG 525 Query: 57 --SMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + D + V++S + Sbjct: 526 GARRMDQMLVSLLEYSRVGRKGEPMAPLASRQPVDEAIRFLEPDIAEANATVRISGQWPE 585 Query: 109 IDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165 I SR+ ++ NL A + + FS+ NG + F Sbjct: 586 IVASRDEFTRLWQNLIGNALKYRDPDRPPDVDIAVTPEDGGWRFSVADNGIGIDPQQ-FD 644 Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 ++ + I + + R+ E L K Sbjct: 645 RLFKVFQRLHARDKYEGTGIGLAVARKIVERHGGRIWVESEGAGQGCRFIFTLPK 699 >gi|91215565|ref|ZP_01252536.1| sensory transduction histidine kinase [Psychroflexus torquis ATCC 700755] gi|91186517|gb|EAS72889.1| sensory transduction histidine kinase [Psychroflexus torquis ATCC 700755] Length = 488 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 19/231 (8%), Positives = 71/231 (30%), Gaps = 22/231 (9%) Query: 6 CFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------Q 51 +S++ L + ++ H+I +P+ + S++ + ++ + Sbjct: 253 ELEISALKLAKTEREEAWRQMARQVAHEIKNPLTPMRLSMQSFERKFNPNDPQIKERVNE 312 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKI 109 + + + +++ I + + + E I Sbjct: 313 FSKTIVQQIDNLSAIASAFSDFAKMPAQQNETLNAVEILRLALEIFNENHIHFNPEKENI 372 Query: 110 DLSRERAKILLNLFM---VAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +R +++ + A + + + + +++ + S++ NG+ + Sbjct: 373 KIKFDRNQLIRIITNLVKNALQATEHLENPVIEVKISTQEDDVMISVEDNGSGIPI-DMQ 431 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +I + + + V + K + + + + L K Sbjct: 432 ERIFEPRFTTKSSGMGLGLGMVKNIIETYKGDIKLTSKLEEGTIFTLKLPK 482 >gi|91774538|ref|YP_544294.1| multi-sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] gi|91708525|gb|ABE48453.1| multi-sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] Length = 708 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 +I + A + R+ H+I +P+ I S E ++ + S + Sbjct: 475 DITQMAQAQRDAAWAEVARRLAHEIKNPLTPIQLSAERIEHKLAAKLSKADAEMLSRATT 534 Query: 62 IRLKFMRLAFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + + VD + D+ + E + Sbjct: 535 TIVSQVNAMKAMVNEFSEYARLPALSLDTVDLRQLVQDVLALYEATSIQIRVDIPPELPT 594 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFT 165 + ++L NL A +L R + I + +K NG E + Sbjct: 595 VHGDATMLRQVLHNLLQNAQDALERHPQPEIVISCRLANECVKLCVKDNGAGFPL-EILS 653 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + V + E+K + E ++ +++ + Sbjct: 654 HAFEPYMTTKRHGTGLGLAIVKKIIEEHKGSIKVENLESGGAIVTVTIP 702 >gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 715 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 63/217 (29%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ AI +LL E ++ + + + Sbjct: 341 AVLSHELRTPLNAILGWSKLLQERKLDPTRTFQALATIERNATLQVQLIEDLLDISRILQ 400 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWT----------------GEKIDLSRERAKILLNLF 123 + +I +V + + + G+ + S +++ NL Sbjct: 401 GKLVINITKVNLVTVILAALETMRLAAESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLL 460 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178 A P GGK+ +++ + + G + + + D + Sbjct: 461 SNAVKFTPNGGKIEVTLDKMEGYAQIVVSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGG 520 Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + V + + + + ++ + L Sbjct: 521 LGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557 >gi|302340427|ref|YP_003805633.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637612|gb|ADK83039.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 390 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 79/237 (33%), Gaps = 24/237 (10%) Query: 2 AKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + + + S + H+I +P+ I ++++LL E + + + + Sbjct: 145 QEAKRLEIEKRLKTKEAILSTLAHEIRTPLTVIQSTVDLLIEERIGPLEERQHQFLSSVG 204 Query: 55 LSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWT 105 + + +D + ++ + A ++ S+ Sbjct: 205 SNVQRLVTLSDTILASIKVESAWFTIKVKPIDIRKVIKNVALHMRPILEAKGIELRYSFP 264 Query: 106 G---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++L+NL A + RGG V ISV +++ + S+ NG+ R E Sbjct: 265 KLLSRPPADEGWIHQVLVNLVHNAVKHMRRGGSVIISVNENEQAVVVSVNDNGSGIRTGE 324 Query: 163 KFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ + V + ++ ++ ++ +S L Sbjct: 325 QPQVFTEFFQGGILSGAQLEGAGLGLAIVKRVIEKHNGKVYVGSVEGSGTTVSFTLP 381 >gi|291547320|emb|CBL20428.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5] Length = 551 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 72/232 (31%), Gaps = 21/232 (9%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ + L + + H++ +P+ +I E++ + ++DE +++ R Sbjct: 312 DVTEKVEREQLRREFSANVSHELKTPLTSISGFAEIMQDGFVKDEDVKVFAGRIYKEAQR 371 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--------- 114 L + +D E++ + D + EK ++ Sbjct: 372 LIRLVGDVIRISRLDEGGLPYQWEKLDLYSLTHDIFSTLHEAAEKQEVHMYMEGGSTVLD 431 Query: 115 -----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L N+ A RGG+V + ++D ++ +++ G E +I + Sbjct: 432 TVPTIMEEVLYNVCDNAVKYNRRGGEVFVRLKDGEDAVRVNVRDTGIGI-PKEDQERIFE 490 Query: 170 GN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + V RL + K Sbjct: 491 RFYRVDKSHSKEIGGTGLGLSIVKHGVKTLNGRLWLNSEPGQGTEILMEFPK 542 >gi|291526619|emb|CBK92205.1| Signal transduction histidine kinase [Eubacterium rectale M104/1] Length = 347 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124 + + + +K + E++ + I +NL Sbjct: 188 NQNIPMKKTEFRLDEQIRQAFLSLETKWTEKEIGFQVEMEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1070 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 56/240 (23%), Gaps = 26/240 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IR 54 + + S L ++ + + H++ +P+ AI E+L E ++ I Sbjct: 554 LQEARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDAAVMGAQEMVGDLAKIH 613 Query: 55 LSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + + Y V+ + D+ I + +K G Sbjct: 614 SAGEHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPLVRKNKNHFHLECG 673 Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLAR 159 + + +IL NL A G E F + G Sbjct: 674 QNLGAMHTDLTKVRQILFNLLNNAAKFTQNGSITLRVQCQEDREIPTISFQVIDTGIGIE 733 Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +H + L Sbjct: 734 QQRLSSLFQSFTQADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSKPGAGSTFCLTLP 793 >gi|164688487|ref|ZP_02212515.1| hypothetical protein CLOBAR_02132 [Clostridium bartlettii DSM 16795] gi|164602900|gb|EDQ96365.1| hypothetical protein CLOBAR_02132 [Clostridium bartlettii DSM 16795] Length = 434 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 68/213 (31%), Gaps = 17/213 (7%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM-------- 67 S + H+I +PI I LL + +DE + +I + + Sbjct: 215 SNVSHEIKTPIATIQGFSNLLKDDTLSKEEKDEYLDIIISETSRISNLTSNILKLTKLET 274 Query: 68 -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMV 125 + T + + D + + + +I + E ++ +NL Sbjct: 275 QGIITDKTSFYLDEQLRHSVLILQRDLAQKNLDIDIDLDEVQIYSNEELLQQVWINLLSN 334 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQ 182 A GGK++I + D+++ + NG + F + + + + + + Sbjct: 335 AIKFTNDGGKISIQLMDTEDTATVKITDNGIGMKAESLNHIFDKFYQEDKSHSSNGNGLG 394 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + + + + L K Sbjct: 395 LPLVKRIVDLCDGTIRVKSLLGEGSSFTVELPK 427 >gi|94985371|ref|YP_604735.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94555652|gb|ABF45566.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 941 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 19/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLS 56 + + ++ +L A + HD+ +P+ I +LL + + ++ + Sbjct: 708 RTLELQDANRELEAF-SYSVSHDLRTPLRHIVGFGDLLRKDAAGHLTPKGERYLSVMTDA 766 Query: 57 SMSAIIRLKFMRLAFGY------TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKI 109 + + + G VD + + + + D + + + Sbjct: 767 AERMSQLIDDLLEFSRMGRQELRRGPVDLSAVVREVWQNLEPDRAGRNVQFDLGPLPTVQ 826 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ--- 166 + ++ NL A + +SV ++ ++ + N F ++ Sbjct: 827 GDAALLTQVFANLLSNALKYTRTREQAQVSVMAQESPQEVTVTVRDNGVGFDPRYADKLF 886 Query: 167 --IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + I V + + R+ E + S L K Sbjct: 887 GVFQRLHRAEEFEGTGIGLANVRRIVTRHGGRVRAEAVPGQGAAFSVTLPK 937 >gi|148264474|ref|YP_001231180.1| integral membrane sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146397974|gb|ABQ26607.1| integral membrane sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 656 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 29/233 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAI 61 M+ + L + HD + + I L+ ED + +++ Sbjct: 284 QKMEAIGTLAGGVAHDFNNLLTVITGFGNLMQMNLQEDTQLMTYADQILIASDRAAVLTK 343 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118 L F R ++ + + +E ++ I+ D +V GE + + + +I Sbjct: 344 RLLTFSRNQIINPSPMNINVIIKSLENILVRVISEDVEFKVDLGGENLTVMTDSGLIDQI 403 Query: 119 LLNLFMVAHASLPRGGKVTIS---------------VQDSKNENIFSLKINGNLARFPEK 163 ++NL A ++P GG +TI + ++ G+ E Sbjct: 404 IINLAANARDAMPNGGMLTIRTNIAELGGESLSPGDHGKPGKYALITVTDTGSGM-EEET 462 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V L ++K + E L Sbjct: 463 VERIFEPFFTTKEVGKGTGLGLSMVYGLVKQHKGVIRVESALGRGTTFRIYLP 515 >gi|88703694|ref|ZP_01101410.1| two-component sensor histidine kinase [Congregibacter litoralis KT71] gi|88702408|gb|EAQ99511.1| two-component sensor histidine kinase [Congregibacter litoralis KT71] Length = 492 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 72/221 (32%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRL---- 69 L + + HD+ +P+ +I LE L + + + ++ ++ + + Sbjct: 270 LIANVSHDLRTPVSSIQGFLETLMVKDLDANAQTDYIRTAHKHALRLNELISELFELSTL 329 Query: 70 ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLN 121 + ++ L + + A ++ + ++ + L ++L N Sbjct: 330 ESGSVEPHWENFPVMELIQDIVLDHEVSARERGITLTTEAPRESLQVRADIAMIHRLLEN 389 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ 175 L A P+GG++TI V + + NG+ + +I + + Sbjct: 390 LIHNALRHTPQGGEITIRVIEDAQRVQVQVSDNGDGIASQDIP-RIFERFYQRDTDSTTD 448 Query: 176 --IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + V + ++ ++ S L Sbjct: 449 SSIGGTGLGLAIVKRIVELHRSQIAVRSESTRGTEFSFWLP 489 >gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 395 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 55/259 (21%), Gaps = 46/259 (17%) Query: 1 MAKNICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 + +N + A + + + H++ +P+ AI E+L E I Sbjct: 129 LKENKRLKQEKHEAEAANRAKSVFLANMSHELRTPLNAIIGYSEILLEDAHSLGSKDFIH 188 Query: 55 LSSMSAIIRLKFMR------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 + + V L I+ +IE + Sbjct: 189 DINNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQPLIEQNNNI 248 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQ 141 + + + + +++LNL A Sbjct: 249 LEIICEDNQEPIMADPNKMRQVILNLLSNAAKFTENGKIILKVKVANNDEDFISQNRDCN 308 Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKI 195 + I S+ G EK + + Sbjct: 309 FTDKVLILSVADTGIGI-SEEKIDSLFQPFTQADNSTTRKYGGTGLGLAISRHFCKMMGG 367 Query: 196 RLLPEIIDDHNVVLSALLE 214 + + + + Sbjct: 368 DITVVSEVNKGSIFTVKFP 386 >gi|326404272|ref|YP_004284354.1| putative two-component sensor histidine kinase [Acidiphilium multivorum AIU301] gi|325051134|dbj|BAJ81472.1| putative two-component sensor histidine kinase [Acidiphilium multivorum AIU301] Length = 549 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 29/244 (11%) Query: 1 MAKNICFNLSSM--DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 +A+ + + ++ + A+ + + H+I +P+ +I +++E + +L + Sbjct: 305 LARALEESAHALWARMDAIERFAADVAHEIKNPLSSIRSAVETVRRTDDPARAARLFDII 364 Query: 57 SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 S + ++ VD L + ++ + D V V Sbjct: 365 SQDVRRLDRLISDISDSSRLDSEMSRTALEPVDLAPILAALAEIHQSTREGDAPVMVLDA 424 Query: 106 GEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF- 160 + ++L NL A + P+ GK+ + + + + +++ G Sbjct: 425 PKTGLVVRGAEGRLVQVLRNLIGNAISFSPQRGKIWLRGRVTGSIVELAVEDEGPGIPDA 484 Query: 161 --PEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLSA 211 F + +S + + ++ R+ E D Sbjct: 485 KLDHVFDRFYSERPQSEGFGNHSGLGLSISRQIVEAHQGRITAENRRDPEGAVIGARFVI 544 Query: 212 LLEK 215 L + Sbjct: 545 RLPR 548 >gi|310819568|ref|YP_003951926.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392640|gb|ADO70099.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 831 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 57/240 (23%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQL 52 + ++ L S H++ +P+ + ++ELL + ++ Sbjct: 585 EQTQKELREAITLRDQFLSMASHELRTPLTPLKATVELLLRQSDENQVLPLERQRSTLER 644 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVS 103 +R + M G ++ ++ +Q+ Sbjct: 645 LRRQVDRLTRLVSDMLDMARIQGGRLAMRRASMDLTALAREVADRIQHSSRERSAPIQLE 704 Query: 104 WTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A P + + + + + + +K G Sbjct: 705 LPEGPLLGVWDEQRLDQLLTNLIENAARYSPPDAPIQVCIGSTADRALIEVKDQGIGVPA 764 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + + + S L Sbjct: 765 ESLPSLFTPFYRARNAAQHYAGGLGLGLAICREIVERHGGTIQASSAGPGQGTRFSVSLP 824 >gi|300955799|ref|ZP_07168141.1| PAS domain S-box [Escherichia coli MS 175-1] gi|300317345|gb|EFJ67129.1| PAS domain S-box [Escherichia coli MS 175-1] Length = 778 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 52/216 (24%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + Q + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFTLEPTLPLPHQVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503 >gi|295704138|ref|YP_003597213.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294801797|gb|ADF38863.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 476 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 60/221 (27%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFM---- 67 + H++ +P+ + +S+ L+ +++ ++ + + Sbjct: 249 FVADASHELRTPLSVMLSSINALEMQEEVTEDPFSKKLINNMKAEVKRMTSLVSDLLTLA 308 Query: 68 --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + + + + +E + + V +++ Sbjct: 309 RSDSNKVEKAMMLFDITDAVQKVMESVETLAISKHIDLQLVDTPEKLVVTGDQERLTQLI 368 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 L A G V I V +E I ++ G E +I D Sbjct: 369 YILLDNAIKYTTPHGNVNIQVVQHGSECILKVRDTGVGIHPDE-KDRIFDRFYRADKSRS 427 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + H + + +K ++ E + + L Sbjct: 428 RQMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTVRLP 468 >gi|291548816|emb|CBL25078.1| Signal transduction histidine kinase [Ruminococcus torques L2-14] Length = 347 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|291534750|emb|CBL07862.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1] Length = 347 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|302877271|ref|YP_003845835.1| multi-sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] gi|302580060|gb|ADL54071.1| multi-sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] Length = 706 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 63/224 (28%), Gaps = 19/224 (8%) Query: 9 LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMS 59 L + A + R+ H+I +P+ I S E L + + + + Sbjct: 477 LQTERQAAWGEVARRLAHEIKNPLTPIQLSAERLQYKLSSKLDETDAKLLQRATQTIVSQ 536 Query: 60 AIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + Y +D + ++ + E E + Sbjct: 537 VGAMKNMVTDFADYARGPVLKLLRLDVHKLIKEVLGLYEANAVPISLDLSEGRAEVNGDA 596 Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++L NL A +L + I Q + E + NG ++ + Sbjct: 597 TRLRQVLHNLLQNAQDALSGVEQPKIILSSQIVQGEIHLRVLDNGTGFSENALS-RVFEP 655 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + E+ ++ E ++ L Sbjct: 656 YMTTKTKGTGLGLAIVKKIIEEHGGQIRVENNASGGACVNISLP 699 >gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 863 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 63/248 (25%), Gaps = 37/248 (14%) Query: 4 NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 L S + A + + + H+I +P+ + L+LLD DE + + Sbjct: 463 QAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTAPNDEQKEYLLG 522 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKR 99 + S + + + + + ++E I++ + Sbjct: 523 AVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKGLVLEFG 582 Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENIFSL 151 I +IL NL A +G S + S + ++ Sbjct: 583 CVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKGKIRIDASLLPLLPSSKSSAIRVLITV 642 Query: 152 KINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G G+ + V L + + + Sbjct: 643 HDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVRRLVNLLGGDIAIDSTLGEG 702 Query: 207 VVLSALLE 214 + L Sbjct: 703 TTVYLSLP 710 >gi|238922419|ref|YP_002935933.1| hypothetical protein EUBELI_20655 [Eubacterium eligens ATCC 27750] gi|238925826|ref|YP_002939344.1| sensor histidine kinase [Eubacterium rectale ATCC 33656] gi|238874091|gb|ACR73799.1| Hypothetical protein EUBELI_20655 [Eubacterium eligens ATCC 27750] gi|238877503|gb|ACR77210.1| sensor histidine kinase [Eubacterium rectale ATCC 33656] Length = 347 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|254449018|ref|ZP_05062472.1| sensor protein PilS [gamma proteobacterium HTCC5015] gi|198261412|gb|EDY85703.1| sensor protein PilS [gamma proteobacterium HTCC5015] Length = 503 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 20/231 (8%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55 ++ + L +L L + I H+I +P+ AI+++ +LLDE + + +I Sbjct: 275 TSDVAKEMQDQKLASLGRLTASIAHEIRNPLSAINHAAQLLDESPQIGDDDSRLTDIITQ 334 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKID 110 S ++ + S I L + ++ + Sbjct: 335 QSKRLNAMVENIMQLSRKHKSTPETIDLDSWLGAFRIDFCTEMKLPGSQFFLDIQVPHQQ 394 Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLKINGNLARFPEK 163 + ++L NL + T + ++ G+ E Sbjct: 395 TLFDTSQLHQVLWNLCSNSIKYGHSEDGKTRIHIECARHATSYLCLNIYDEGSGI-PREV 453 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + S + Y L N L + +D + L Sbjct: 454 ADHIFEPFYTTNSASSGLGLYIAHELCAFNHAELSYQHQEDGG-QFTLRLP 503 >gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 934 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 25/239 (10%) Query: 1 MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57 + + + + + + H++ SP+ I +LL E Q + Sbjct: 546 LQREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRPFAPEKAQQALQTI 605 Query: 58 MSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW 104 + VD + + V A +++ Sbjct: 606 ERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQLERHL 665 Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + +S + +I+ NL A P G +V I ++ E ++ G Sbjct: 666 ANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERVGAEAQMQVRDTGKGINPS 725 Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214 + D + V L + + E + L Sbjct: 726 FLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQAESGGEGQGATFKVRLP 784 >gi|166033277|ref|ZP_02236106.1| hypothetical protein DORFOR_03003 [Dorea formicigenerans ATCC 27755] gi|166027634|gb|EDR46391.1| hypothetical protein DORFOR_03003 [Dorea formicigenerans ATCC 27755] Length = 347 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37] gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 968 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 61/246 (24%), Gaps = 34/246 (13%) Query: 2 AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 KNI L ++ + + + H+I +P+ + EL+ E + E + + Sbjct: 419 RKNIQQALHEKEIAVKASQAKSEFLATMSHEIRTPMNGVLGMTELVLETELSSEQRRFME 478 Query: 55 LSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----DK 98 + S L + ++ + + + + + Sbjct: 479 MIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQELIKHLVTSLSPLAKKKGLQLNY 538 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKIN 154 + + ++L NL A RG V + ++ + Sbjct: 539 NLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRGEVLVSAVIFEQSATALSLQIRVRDS 598 Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G PE +I + + L + Sbjct: 599 GIGI-APENQDKIFESFSQADSSTTRNYGGTGLGLAISKQLIEMMGGSIGFSSELGQGTT 657 Query: 209 LSALLE 214 L+ Sbjct: 658 FWFDLK 663 >gi|167849925|ref|ZP_02475433.1| sensory box histidine kinase [Burkholderia pseudomallei B7210] gi|167915237|ref|ZP_02502328.1| sensory box histidine kinase [Burkholderia pseudomallei 112] Length = 709 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695 >gi|53717169|ref|YP_105595.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344] gi|167742919|ref|ZP_02415693.1| sensory box histidine kinase [Burkholderia pseudomallei 14] gi|167923067|ref|ZP_02510158.1| sensory box histidine kinase [Burkholderia pseudomallei BCC215] gi|52423139|gb|AAU46709.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344] Length = 723 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709 >gi|320016102|gb|ADV99673.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 908 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALYMLETTLSQHQIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + + NG + Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVQGEWLNVDVWDNGPGVTIGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883 >gi|313124173|ref|YP_004034432.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280736|gb|ADQ61455.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 530 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 60/236 (25%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50 M + + S + H++ +P+ I L +L G +D + Sbjct: 268 MLDRMQKYIEQQK---QFVSDVSHELRTPVAVIEGHLSMLKRWGKDDPQVLEESIDASIS 324 Query: 51 --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVS 103 + ++ + + +++ Y ++ + + + D ++ + Sbjct: 325 EAERMKHLIQEMLDLTRAEQISVHYPNAITEPMEVLTRVVGDMGMVHPDFKISLEVEDLD 384 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +IL+ L ++ ++ S E ++ G +K Sbjct: 385 PDTKIQIFQGHLEQILIILIDNGIKYSTDRKEIAVAAGQSGQEMQIVVQDYGEGISDEDK 444 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + Sbjct: 445 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVESYHGTIDVESVLGQGSQFRITFP 500 >gi|296115545|ref|ZP_06834174.1| PAS/PAC sensor signal transduction histidine kinase [Gluconacetobacter hansenii ATCC 23769] gi|295977905|gb|EFG84654.1| PAS/PAC sensor signal transduction histidine kinase [Gluconacetobacter hansenii ATCC 23769] Length = 502 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54 M + L A+ + + + H++ P+ AI N L LL + ++E +Q Sbjct: 261 MRQLQAEVTHISRLSAMGEMAATLAHELNQPLTAITNFLNGGRRLLQKGSGQNERVQEAI 320 Query: 55 --------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWT 105 + +F+ G G + ++ + V Sbjct: 321 DKAAAQALRAGQIIRSLREFVSRGEGDLGLQSLTALVEEMAVLALVGIAERGINVSFRLD 380 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARF 160 + ++ +I L + ++ + S+ G Sbjct: 381 SNVDQVIADKIQIQQVLLNLIRNAVESMEDCHERRLVVAIDAFEGMARVSVTDTGAGV-R 439 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ + + + + + R+ + + + L Sbjct: 440 PEIAGKLFEPFSTTKDHGMGVGLSICRTIVEAHGGRIWAQAVPEGGTCFLFTLP 493 >gi|229092185|ref|ZP_04223366.1| hypothetical protein bcere0021_29750 [Bacillus cereus Rock3-42] gi|228691176|gb|EEL44940.1| hypothetical protein bcere0021_29750 [Bacillus cereus Rock3-42] Length = 436 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|196037888|ref|ZP_03105198.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|228946827|ref|ZP_04109129.1| hypothetical protein bthur0007_29620 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|196031158|gb|EDX69755.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|228812814|gb|EEM59133.1| hypothetical protein bthur0007_29620 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 436 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis C6786] Length = 764 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 +S L L + + H++ +P+ I+ +E+L Q I SA Sbjct: 382 RDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGGALQQQAIDAIDRSAR 441 Query: 62 IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 + +RL V + + +D V + Sbjct: 442 SLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQAEGLDLTVDCALETC 501 Query: 108 KID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165 + ++L NL A PRGG+VT+S+ + + + G Sbjct: 502 IVSGDGERLRQVLSNLLSNAFKFTPRGGRVTVSLMRTDSHATLVVADTGQGISPEFLPHV 561 Query: 166 ----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214 + DG+ S+ + V +A + ++ + L Sbjct: 562 FEAFRRADGSPASSRRGLGLGLSIVRHIAELHGGKVEVASAGKRLGTTFTVTLP 615 >gi|160893754|ref|ZP_02074538.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50] gi|156864739|gb|EDO58170.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50] Length = 501 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 21/216 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMR------- 68 S I HD SP+ +I +E + + ++ +Q++ +M + + Sbjct: 252 SNISHDFRSPLTSIKGYIEAMIDGTIPPDKHEKYLQIVLSETMRLTKLTQGLLELNNFDS 311 Query: 69 -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L + E +D + + +++ NL Sbjct: 312 FDLQLDKSNFDIKSIILPTINTFEGRCQDKGIYLHAIFHTDNTIVYADRTRIQQVIYNLV 371 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID--S 178 A P G ++T+ V + ++ S+K G F + + D Sbjct: 372 DNAIKFTPEGRQITVQVTEKSDKVYVSVKDEGVGIPPESIKKVFDRFYKTDPSRGKDKTG 431 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 432 TGLGLAITKEIIKAHGENITLTSKVGEGSEFIFSLP 467 >gi|148975516|ref|ZP_01812387.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3] gi|145964944|gb|EDK30195.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3] Length = 684 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 16/236 (6%), Positives = 51/236 (21%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + +L + + H++ +P+ + +++ E + + ++ S Sbjct: 151 QEAADKAQKASEAKSLFLATMSHELRTPMNGVLGIAQIIKEDSQSADTRKQAQIIIDSGQ 210 Query: 62 IRLKFMRLAFGYTGSVDSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + ++ + L + + + Sbjct: 211 HLVTILNDILDFSKVEQGKMELELSPFSVTDVVTHLDKTLTPLATDKGISFVIKDNIPTN 270 Query: 110 DL----SRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 S +IL NL A + + + G + Sbjct: 271 IQLVGDSARTRQILFNLAGNAVKFTESGKVEVEFEIAPTTPPSVNIMVSDTGIGIAEDKV 330 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + + + L Sbjct: 331 DHIFTAFEQAELSTTRKFGGTGLGLSIVKQLVELMGGTIDVSSQLNMGTCFTISLP 386 >gi|119961879|ref|YP_946688.1| signal transduction histidine kinase [Arthrobacter aurescens TC1] gi|119948738|gb|ABM07649.1| putative signal transduction histidine kinase [Arthrobacter aurescens TC1] Length = 408 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 62/235 (26%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 +A + + ++ + + H++ +P+GAI E L+ + + + Sbjct: 117 LADDRTEITRTEEIRNDFVANVSHELKTPVGAISLLAEALEASPDDEEAVRRFAKRMHKE 176 Query: 57 SMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 S ++ + +VD + + + V Sbjct: 177 SGRLAALVQDIIELSRLQGANVAQQGHAVDINTVITEAVDRSQLPAESKNIQIVVGGHSD 236 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + +R ++ L A P +V + V+ + S+ G E Sbjct: 237 SLVFGDRDLLVTALRNLIDNAIRYSPENTRVGVGVRTREGVVAISVTDQGEGL-TAEDQE 295 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + + + + L Sbjct: 296 RVFERFYRVDAARSRHTGGTGLGLSIVKHVVSNHGGEVTVWSQPGQGSTFTIRLP 350 >gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 597 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 59/236 (25%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 359 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEKEKKEMAKVIYD 414 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVS 103 L R+ G+ + + ++ Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E ++L NL A GG V + ++ S + ++ +G+ + Sbjct: 475 RDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + +K + + S L Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLP 590 >gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] Length = 732 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 57/228 (25%), Gaps = 25/228 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63 SS L + + + H+I +P+ I ++LL + E + + S+ + Sbjct: 362 SSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHLTPEQEDFLHHINSSSKMLLTIIND 421 Query: 64 --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + L L + + + + + Sbjct: 422 ILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEFTANAAYWVYCDEMRV 481 Query: 116 AKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +I NL A +G I+ D + +++ G + ++ Sbjct: 482 KQIFTNLISNAIKFTLKGKVTLTLKKITATDENTQFEVNVEDTGIGI-ADDVIGKLFKPF 540 Query: 172 V------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L + + + L Sbjct: 541 IQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFLVRL 588 >gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1022 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +LL + + + +++ + + Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105 + + L+ +GSV+ D+ + + + K+ + Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A P+G + + ++ G +K Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + A+L Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864 >gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 1022 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +LL + + + +++ + + Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105 + + L+ +GSV+ D+ + + + K+ + Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A P+G + + ++ G +K Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + A+L Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864 >gi|237654306|ref|YP_002890620.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thauera sp. MZ1T] gi|237625553|gb|ACR02243.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thauera sp. MZ1T] Length = 358 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/230 (9%), Positives = 65/230 (28%), Gaps = 20/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---M 58 A+ L+ + H+I +P+G I S +LL + ++ + + Sbjct: 127 AREEQLLHQQQANRELI-RNLAHEIKNPLGGIRGSAQLLQHELDDPQLREFTDVIIAEAD 185 Query: 59 SAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + + + + + + + + + +L+ +R + Sbjct: 186 RLQDLMNRLLSSHCMMRPASINLHDVLERVRRLILAEFPSIGIVPDYDLSLPELTADREQ 245 Query: 118 ILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ + + + +VT++ + K + +G E Sbjct: 246 LIQAVLNIVRNAAQALGGHGEILLRTRIARQVTLAKRRHKLALKLQVIDDGPGI-PEEIR 304 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V + +++ + + + LL Sbjct: 305 DRIFYPLVSGREGGSGLGLSLAQSFIEQHQGMIEVDSRPGR-TCFTILLP 353 >gi|196032095|ref|ZP_03099509.1| sensor histidine kinase [Bacillus cereus W] gi|196042760|ref|ZP_03109999.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|218904352|ref|YP_002452186.1| sensor histidine kinase [Bacillus cereus AH820] gi|229122744|ref|ZP_04251953.1| hypothetical protein bcere0016_30360 [Bacillus cereus 95/8201] gi|229185422|ref|ZP_04312604.1| hypothetical protein bcere0004_29750 [Bacillus cereus BGSC 6E1] gi|195994846|gb|EDX58800.1| sensor histidine kinase [Bacillus cereus W] gi|196026244|gb|EDX64912.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|218537711|gb|ACK90109.1| sensor histidine kinase [Bacillus cereus AH820] gi|228598010|gb|EEK55648.1| hypothetical protein bcere0004_29750 [Bacillus cereus BGSC 6E1] gi|228660608|gb|EEL16239.1| hypothetical protein bcere0016_30360 [Bacillus cereus 95/8201] Length = 436 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52 M + + + S S H++ +P I + E + + +++ Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255 Query: 53 IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 R S F + + + ++ ++D + Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163 ++L+NL A A G V + + + I + NG Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375 Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ S I + + V + + + E + L Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431 >gi|149277835|ref|ZP_01883975.1| sensor for ctr capsule biosynthesis; sensor histidine kinase [Pedobacter sp. BAL39] gi|149231523|gb|EDM36902.1| sensor for ctr capsule biosynthesis; sensor histidine kinase [Pedobacter sp. BAL39] Length = 684 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 69/212 (32%), Gaps = 18/212 (8%) Query: 21 RICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + H++ +P+ ++ +++L + + ++ + + F+ ++ Sbjct: 471 MVSHELKTPLTSLKGYVQVLHGKASKVKDEFASGMLSKVNNQVNKMNAMINGFLSISRLE 530 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLNLFMV 125 +G + ++ ++Q+I + I ++ + E + ++ NL Sbjct: 531 SGKILLVMEEFALDQLIAEVIDENEVLFPVHHIEFHRCEGLMLNADRDKIGHVVSNLISN 590 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQ 182 A + I +E I S+K +G + F + + I I Sbjct: 591 AAKYSSAESVIEIHCSREGDEAIVSVKDSGIGIPAEDHGRLFERYYRVESNNLISGFGIG 650 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y + + R+ E V L Sbjct: 651 LYLSAEIIERHHGRIWVESEVGKGSVFHFSLP 682 >gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 820 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53 + + + + + + H++ SP+ I LL + + + I Sbjct: 441 LEREQAARKEAEQANRIKDEFLAMLSHELRSPLNPILGWSTLLQTKKFDSATTQKGLSTI 500 Query: 54 RLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ + + V + ++ + + ++ R + Sbjct: 501 ERNAKLQTQLIDDLLDIARILRGKLKLKETTVNLVTVIEEGIEVVRRAAEAKSIALRFNL 560 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + ++L NL A P GG+V + ++ ++ ++ G + Sbjct: 561 IDSCQVRGDEGRLEQVLWNLLSNAVKFTPEGGQVIVQLEVLHDQACITVVDTGKGIKPEF 620 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + V L + + E + + Sbjct: 621 LPDLFQTFCQEDISITRNYGGLGLGLAIVKYLVDAHGGSITAESAGEGQGATFTVQFP 678 >gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1022 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +LL + + + +++ + + Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105 + + L+ +GSV+ D+ + + + K+ + Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A P+G + + ++ G +K Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + A+L Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864 >gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 1022 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + S L + + + H+I +P+ AI +LL + + + +++ + + Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105 + + L+ +GSV+ D+ + + + K+ + Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 A+++ N A P+G + + ++ G +K Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814 Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + A+L Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864 >gi|117928473|ref|YP_873024.1| PAS/PAC sensor signal transduction histidine kinase [Acidothermus cellulolyticus 11B] gi|117648936|gb|ABK53038.1| PAS/PAC sensor signal transduction histidine kinase [Acidothermus cellulolyticus 11B] Length = 335 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 51/214 (23%), Gaps = 18/214 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRLA- 70 L S + H++ SP+ ++ L +++ + + + + Sbjct: 115 LISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNADADRVTRLIGELLDVS 174 Query: 71 ---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILL 120 V + +V V V ++ L ++ ++L Sbjct: 175 RIDADRLELHRQVVDVGAAAARVVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLA 234 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL A RG ++ G+ + Sbjct: 235 NLVDNAIRH-GRGTVTVHVAPAPGEGVDITVTDQGDGVPPEVRPLIFRRFWRAGRYGGTG 293 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y V L + + + + Sbjct: 294 LGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327 >gi|150392094|ref|YP_001322143.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951956|gb|ABR50484.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 627 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 78/244 (31%), Gaps = 30/244 (12%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------- 48 M + + + ++ L S + H++ +P+ I S +L++++ + Sbjct: 343 MTEELNQRIKEIEEYNELKDQFLSTVSHELKTPLNIILGSNQLMEQLDHNNMESWNVNIK 402 Query: 49 -VMQLIRLSSMSAIIRLKFMRL----AFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDK 98 +++ + + + + + + + + + ++ + Sbjct: 403 KYLKMQKQNCYRLLRLINNLIDVTKAENHHLRAHPINRDITKTVEDITMSIVGYADLKNI 462 Query: 99 RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 V E+ +S + +I+LN+ A GG++ +++ D K S+K NG Sbjct: 463 NVVFDTEVEEKIMSFDEDLIERIMLNILSNAIKFTGEGGEIQVTIYDRKEIIAISIKDNG 522 Query: 156 NLARFPE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + F + + + I V L + ++ Sbjct: 523 IGIPEDKTEIIFDRFAQVDSTLSREFEGSGIGLALVKYLVELHDGKISVVSKFGEGSEFI 582 Query: 211 ALLE 214 L Sbjct: 583 IELP 586 >gi|330986412|gb|EGH84515.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 697 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +A+ S + A+ L I HD + + I SLELL + ++ R Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ L F R +VD + +E++I + ++V + Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKAVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427 Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151 + ++ LNL + A ++PR + Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE + D + + V ++ ++ + + Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546 Query: 210 SALLEK 215 L + Sbjct: 547 CLYLPR 552 >gi|312143225|ref|YP_003994671.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311903876|gb|ADQ14317.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 525 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 27/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQL 52 K L L + I H++ +P+ I +SL+LL+ + + ++ Sbjct: 254 KKQNEELEYSKLRTQFFANISHELKTPLNLIFSSLQLLEFYLYNSQTYKDKDKINNYLKS 313 Query: 53 IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 I+ + + + + G V + + + + D + Sbjct: 314 IKNNGFRLLRLVNNLIDITRIEVDAFSLHRGNFDIVKLIREIVNTVSDYLEEKERDFKFI 373 Query: 102 VSWTGEKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 I +++LNL A RG ++ +++Q S+K G Sbjct: 374 CDLDSAVIACDPFNIERVILNLISNAVKFSARGDQIILTLQKVDEAISLSVKDTGIGIEK 433 Query: 161 P-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + VD + + + I V + + ++ E + L Sbjct: 434 ENQAIIFDKFRQVDQSFKKKREGSGIGLSLVKSIIEMHGGKIELESDYGYYSNFKVFLP 492 >gi|302336522|ref|YP_003801729.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] gi|301320362|gb|ADK68849.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] Length = 532 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 60/220 (27%), Gaps = 23/220 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-- 73 L S + H++ +P+ A+ ++E + + +DE ++ + + M Sbjct: 288 LTSDVAHELRTPLMAMLATVEAMQDGVLPTDDEHLETVAEEVRRLSRLVDAMLHLSRIEN 347 Query: 74 ------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 V SL+ + + + + + + N Sbjct: 348 GTRQLKVKSDDLVYLVKSLVSMQERMFADKGLRLRFDDKTAEGECFVDMDADLIREAITN 407 Query: 122 LFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVEST- 175 + A P V++ + E S++ G + + + Sbjct: 408 IMSNAMRYTPEGGWVVVSVERDRPRGEARVSVQDTGIGIAREDIPRVFSRFWRSDASRER 467 Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++K + E D + + Sbjct: 468 VSGGLGVGLALTKEIVDKHKGTISVESELDKGTTFTIHVP 507 >gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 596 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55 M + + + + + H++ +PI + E + + E Q+I Sbjct: 356 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 411 Query: 56 SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 S+ + M ++ L + V+ V+ +++ Sbjct: 412 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLEKVMANFDVLAKENFVELGLELET 471 Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158 + +R ++L+NL M A + G ++ ++ N+ I ++ NG+ Sbjct: 472 PNLEYSYDPDRMEQVLINLIMNAIRHTGKEGYQGKVVLKQTIDETNNKLIITVSDNGSGI 531 Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + F + + I V + + ++ + Sbjct: 532 AEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHGGKISVKSELGKGSDFIIT 591 Query: 213 LE 214 L Sbjct: 592 LP 593 >gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 602 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 66/220 (30%), Gaps = 26/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII-----RLKFM 67 + + H++ +P+ AI ++L + E + L+R S + Sbjct: 350 AVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSILDVSR 409 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILL 120 + Y + + +E + + + + + +IL+ Sbjct: 410 IESGAYATEPEPFRFMEAVEMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQILI 469 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174 NL A P GG V + + + F ++ G E F + + Sbjct: 470 NLVSNAVKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGI-AEEDFANLGKPFMQIQNDYTR 528 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V L ++ + E + ++ L Sbjct: 529 RFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 568 >gi|157148988|ref|YP_001456307.1| osmolarity sensor protein [Citrobacter koseri ATCC BAA-895] gi|157086193|gb|ABV15871.1| hypothetical protein CKO_04826 [Citrobacter koseri ATCC BAA-895] Length = 450 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 61/205 (29%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + + + N+ + A Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIDTALQPGSIQVKMHPLSIKRAIANMVVNAARY--G 352 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 G + +S + F ++ +G + F V G+ + + V + Sbjct: 353 NGWIKVSSGTEPHRAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + A L Sbjct: 413 VDNHNGMLEIGSSERGGLSIRAWLP 437 >gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 623 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 62/245 (25%), Gaps = 35/245 (14%) Query: 2 AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 AKN + L + + + H++ +P+ AI E+L E E + I Sbjct: 111 AKNQAE--HAQRLAEEANVTKSQFLANMSHELRTPLNAILGYSEILQEEAEELGQSECIS 168 Query: 55 LSSMSAIIRLKFMR--------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100 + + D I + ++ I+ + + Sbjct: 169 DLQRIYSAGKHLLELINDVLDISKIEAGKMDLSLETFDLAIVIKEVISNIQPQVEKKANI 228 Query: 101 ----QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKING 155 G + + ++LLNL A +G + + F + NG Sbjct: 229 LEVKIADPLGTMLSDLTKLRQMLLNLLSNAAKFTEQGTISIEVKREQEETWFCFMVTDNG 288 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E+ ++ + A +L Sbjct: 289 IGM-TEEQQKKVFQPFTQADASTTRRFGGTGLGLAITKQFAEMMGGYILVNSEFGKGSTF 347 Query: 210 SALLE 214 LL Sbjct: 348 KLLLP 352 >gi|153872867|ref|ZP_02001635.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070667|gb|EDN68365.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 379 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 26/237 (10%) Query: 2 AKNICFNLSS--MDLVALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVMQ 51 + L M+L A + HD+ +P+ + E L E + + + Sbjct: 142 RQEYAIKLEQRNMELNAF-ARTVAHDLKNPLTGVMGLSEQLSEKCSTNRFHCKTDSKYLG 200 Query: 52 LIRLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 LI S + + T +D + + + ++ D + +S Sbjct: 201 LITESGQKMLDIVNALLLLARTAGTHEVKTQPLDMSTIINQVVETRLAWMIRDFQAHISL 260 Query: 105 TGEKID---LSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF 160 + ++ N + + + + N F ++ NG Sbjct: 261 PKSWPIALGYAPWVEEVWANYLSNGLKYGGQPPSLELGAEPQNNNMTRFWIRDNGPGL-S 319 Query: 161 PEKFTQIVDGN---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E TQ+ + D H + V + + ++ E I+ + L Sbjct: 320 REAQTQLFTPFTRLHKERADGHGLGLSIVQQIVEKQGGQIGLESIEGQGSLFYFTLP 376 >gi|94267578|ref|ZP_01290927.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451936|gb|EAT02655.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 704 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS----- 56 K+ F S+ +L + HD+ P+ I++ + LL+ + + + Sbjct: 467 EKSAEFQRSNAELE-QFAYVVSHDLRQPLRMINSYMGLLERDLNDKLTDETREMMGFAVG 525 Query: 57 --SMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + + I + D + V++S + Sbjct: 526 GARRMDQMLVSLLEYSRVGRKGEPMAPLASRQPVDEAIRFLEPDIAEANATVRISGQWPE 585 Query: 109 IDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165 I SR+ ++ NL A + + F++ NG + F Sbjct: 586 IVASRDEFTRLWQNLIGNALKYRDPDRPPDVDIAVTPEDGGWRFTVADNGIGIDPQQ-FD 644 Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 ++ + I + + R+ E L K Sbjct: 645 RLFKVFQRLHARDKYEGTGIGLAVARKIVERHGGRIWVESQGAGQGCRFIFTLPK 699 >gi|309782478|ref|ZP_07677202.1| phosphate regulon sensor kinase PhoR [Ralstonia sp. 5_7_47FAA] gi|308918815|gb|EFP64488.1| phosphate regulon sensor kinase PhoR [Ralstonia sp. 5_7_47FAA] Length = 442 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM------ 67 + + H++ +P+ + LE + + + + ++ +M ++ + Sbjct: 210 FVANVSHELKTPLTVLSGFLETVRDIPLPEEDKRRYLDMMHTQAMRMQHLVEDLLALATL 269 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + ++ + + E NL Sbjct: 270 EGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRHTVSMTCDPAVSVCGAELELLSAFSNLA 329 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG + + ++S+ G PE ++ + Sbjct: 330 SNAVRYTPDGGSIRLDWGVRDGHAVYSVTDTGIGI-APEHIPRLTERFYRVDRSRSRDTG 388 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L A+ Sbjct: 389 GTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425 >gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 586 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A + L + + + + + H+I +P+ + ++LL + ++ E QL+ + SA Sbjct: 170 LAYSRDKALEGVRMKDIFLANMSHEIRTPMNGVLGMIDLLYDTEMDAEQEQLVGTARSSA 229 Query: 61 IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105 ++ + ++ + + + + + + Sbjct: 230 ETLMRIINDILDFSKIEAGKVSVELMPFNLIEIVESSAALYSEAATEKEIDLAVAFDDVP 289 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARFPE 162 + ++L NL A G + Q + +K G + Sbjct: 290 AWVVGDPHRYQQVLNNLISNAVKFTDSGEVEIRACQVETGSGLGILTEVKDTGIGIPASK 349 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + + D V S +L Sbjct: 350 VT-KLFEPFTQAEESHARRFGGTGLGLSICRNLCELLGGEIECDSQLDDGTVFSFVLP 406 >gi|260889616|ref|ZP_05900879.1| sensor histidine kinase [Leptotrichia hofstadii F0254] gi|260861027|gb|EEX75527.1| sensor histidine kinase [Leptotrichia hofstadii F0254] Length = 472 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 67/242 (27%), Gaps = 31/242 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIED--EVMQL 52 M + A S + H++ +P+ AI E L+E + +++ Sbjct: 230 MFNRLQEAFDRE---AQFTSDVAHELRTPLSAIRMQSEYSLKYLNLNEESEDILKNILEK 286 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSW--T 105 + S L R+ L +I Q+ + ++ Sbjct: 287 SKKMSTLISQLLMLARMDKKNQKLNIENENLNEIIQLVIEVENNYAKEKNIKIIYDEKND 346 Query: 106 GEKIDLSRERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKING 155 ++ +NL A L + + + ++ + +G Sbjct: 347 IFADVDKDMLTRVFINLISNAITYGNENGTIKITLDKIENESENTDLQNSKIQCKIIDDG 406 Query: 156 NLARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + + D+ + V + E+K ++ E + + Sbjct: 407 IGISSEHINKIWNRFYQIDSSRSSDNSGLGLSIVKWIIEEHKGTIMVESELGKGTIFTFY 466 Query: 213 LE 214 L Sbjct: 467 LP 468 >gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603] gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603] Length = 733 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 20/237 (8%), Positives = 57/237 (24%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + +S + + + H+I +P+ + + ++L + + + Q + S Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTAKQRQHLTSLYESG 399 Query: 61 IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104 + + Y+ +G I+ + ++ Sbjct: 400 EHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHSEIID 459 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161 T +I+ NL A +G + ++ +G Sbjct: 460 TRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIGDEYFLTIKVQDSGIGI-PQ 518 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + +I + V +A + + Sbjct: 519 DALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEVR 575 >gi|257886295|ref|ZP_05665948.1| histidine kinase [Enterococcus faecium 1,231,501] gi|257822151|gb|EEV49281.1| histidine kinase [Enterococcus faecium 1,231,501] Length = 346 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 21/236 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51 + K+ + ++ L S + H+ +P+ I ++LL + + + + Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVS 103 +I + + + ++L + I + + + + Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 + E ++ LN+ A G++ I + ++ E + + +G Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGQIHIKLFETATEIVLEVTDSGVGMNEET 290 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ I + + V + + R+ I+ L K Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAIIRLSK 346 >gi|218441909|ref|YP_002380238.1| histidine kinase [Cyanothece sp. PCC 7424] gi|218174637|gb|ACK73370.1| histidine kinase [Cyanothece sp. PCC 7424] Length = 427 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 61/228 (26%), Gaps = 26/228 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----LSSMSAIIRL 64 + + H++ +P+ AI S+E++ + + ++ Sbjct: 198 QQLK---QFTADASHELRNPLTAIQTSIEVMLNHPERVHPKDMKKLVAVASATEQMSRLT 254 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------------VDKRVQVSWTGEKIDL 111 + + V ++ V E + + QV + Sbjct: 255 QDLLFLARTKTPVSTVENAWKPTSVNEILQNLVDLLEPLAEDKEITLKYQVLANVAVMGE 314 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIV 168 + +++ NL A GKV++ + + S++ G + F + Sbjct: 315 PAQLSRLFSNLLQNAIQYSLPQGKVSVCLAKQNRFCLVSVEDTGIGIAPEDIPFVFNRFW 374 Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A + ++ L Sbjct: 375 RADKARSRREGGTGLGLSIAMAIAQHHGGKITVTSELGVGSCFKVYLP 422 >gi|154495258|ref|ZP_02034263.1| hypothetical protein PARMER_04314 [Parabacteroides merdae ATCC 43184] gi|154085182|gb|EDN84227.1| hypothetical protein PARMER_04314 [Parabacteroides merdae ATCC 43184] Length = 684 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 64/231 (27%), Gaps = 23/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54 +N S +L + + HD+ +P+ A+ ELL G D ++ Sbjct: 319 RRNRELLRSRKEL----MASVAHDLRAPLAAVKGCAELLPSESDVSRRTGYLDNILHSSD 374 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVS-----WTG 106 +++ R+ G S D+L L + A K + + Sbjct: 375 YMLGLVNTLMEYHRMDEGGVRSNDTLFSLKVLFEEIADGHRLAARQKNLMFTVSFSGLDT 434 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 +I NL A P G + S++ G E Sbjct: 435 IVCCDGSHIRQIADNLLSNALKFTPHGEVRLEAEYLYGE-LCISVRDTGVGISAEEKERI 493 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I + L E + R+ + + S L Sbjct: 494 FGAFERLDNARGIPGFGLGLAITARLVSEMRGRVEVKSVPGEGSRFSVFLP 544 >gi|83646921|ref|YP_435356.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634964|gb|ABC30931.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 433 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 24/220 (10%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK---------- 65 + + H++ +P+ AI SL LL + +++++ + + +K Sbjct: 208 VAVVSHELRTPLTAIQGSLGLLQSGRFDHNPDQKAHMLQMACNNTVRLVKLVNEVLDIER 267 Query: 66 ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + L + + D V R Q ++L N Sbjct: 268 IESGRLTLELTSLNPRELIQEAVDTIAPAASLKNVSLRYQPQDATPIKADHDRLLQVLQN 327 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175 L A P GG + + ++D + + G + ++ + Sbjct: 328 LLSNALKFSPSGGVIEVKLKDKPEQLNIDVIDQGPGI-PQQLTKRLFTRFAQATTAANRS 386 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + Y + +++ R+ E + L + Sbjct: 387 TGGSGLGLYISKAIIEQHQGRIGFENQPEGGCRFFVELPR 426 >gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942] gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 754 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 19/220 (8%), Positives = 50/220 (22%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRL------- 69 + + H++ +P+ + L + + + I+ S L+ + Sbjct: 389 ATMSHELRTPLTCVIGMSSTLLRWAFGPLTERQREYIKAIHDSGEHLLELINDILDLSQI 448 Query: 70 -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 + Q + + + + ++ L Sbjct: 449 EAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPKRLRQIL 508 Query: 123 FM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174 A G V + V + IF + G E+ D ++ Sbjct: 509 INLLSNAVKFTEPQGTVFLRVWREGDRAIFQVSDTGIGIPESEQAQLFQKFQQLDTSIRR 568 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + E + + Sbjct: 569 QYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIP 608 >gi|119716239|ref|YP_923204.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119536900|gb|ABL81517.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 508 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 25/236 (10%) Query: 1 MAKNICFNLSSMDLVALLC-------SRICHDIISPIGAIHNSLELLD--EVGIEDEVMQ 51 + + + L ++ A + + H++ +P+ + LELLD + E + Sbjct: 265 LTRTVNGMLDRLE-AAFVGQREFLDDAG--HELRTPLTVLRGHLELLDTGDPAEVAETKE 321 Query: 52 LIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L+ + + R F VD D+ D ++ + Sbjct: 322 LLLDEVDRMSRLVGDLILLAKSDRPDFLQLRPVDLAGLTADVLAKARGLGDRDWQLDAAA 381 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + + LL L A G V I ++ G + Sbjct: 382 DVVVVGDEQRLTQALLQLADNAVKHTGPGDTVAIGSSYDDGRARLWVRDTGPGVPPEQRG 441 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD---HNVVLSALLE 214 F + G V + + V +A + + E ++ L Sbjct: 442 LIFERFGRGAVMPGDEGFGLGLSIVSAIARSHGGGVEVEDAEETAPRGARFVMTLP 497 >gi|22125162|ref|NP_668585.1| sensor protein KdpD [Yersinia pestis KIM 10] gi|45442275|ref|NP_993814.1| sensor protein KdpD [Yersinia pestis biovar Microtus str. 91001] gi|51597235|ref|YP_071426.1| sensor protein KdpD [Yersinia pseudotuberculosis IP 32953] gi|108808413|ref|YP_652329.1| sensor protein KdpD [Yersinia pestis Antiqua] gi|108811339|ref|YP_647106.1| sensor protein KdpD [Yersinia pestis Nepal516] gi|149365418|ref|ZP_01887453.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis CA88-4125] gi|162419854|ref|YP_001607904.1| sensor protein KdpD [Yersinia pestis Angola] gi|165925390|ref|ZP_02221222.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. F1991016] gi|165937048|ref|ZP_02225613.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. IP275] gi|166008476|ref|ZP_02229374.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. E1979001] gi|166212512|ref|ZP_02238547.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. B42003004] gi|167398925|ref|ZP_02304449.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421451|ref|ZP_02313204.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423813|ref|ZP_02315566.1| sensor protein KdpD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469458|ref|ZP_02334162.1| sensor protein KdpD [Yersinia pestis FV-1] gi|218929762|ref|YP_002347637.1| sensor protein KdpD [Yersinia pestis CO92] gi|229838248|ref|ZP_04458407.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895557|ref|ZP_04510728.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis Pestoides A] gi|229898813|ref|ZP_04513958.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis biovar Orientalis str. India 195] gi|229901587|ref|ZP_04516709.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis Nepal516] gi|294504481|ref|YP_003568543.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis Z176003] gi|21958024|gb|AAM84836.1|AE013729_4 sensor for high-affinity potassium transport system [Yersinia pestis KIM 10] gi|45437139|gb|AAS62691.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis biovar Microtus str. 91001] gi|51590517|emb|CAH22157.1| two-component regulatory protein sensor kinase KdpD [Yersinia pseudotuberculosis IP 32953] gi|108774987|gb|ABG17506.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis Nepal516] gi|108780326|gb|ABG14384.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis Antiqua] gi|115348373|emb|CAL21308.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis CO92] gi|149291831|gb|EDM41905.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis CA88-4125] gi|162352669|gb|ABX86617.1| sensor protein KdpD [Yersinia pestis Angola] gi|165914911|gb|EDR33523.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. IP275] gi|165922997|gb|EDR40148.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. F1991016] gi|165992858|gb|EDR45159.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. E1979001] gi|166206443|gb|EDR50923.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. B42003004] gi|166960940|gb|EDR56961.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051429|gb|EDR62837.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057983|gb|EDR67729.1| sensor protein KdpD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681516|gb|EEO77610.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis Nepal516] gi|229688361|gb|EEO80432.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis biovar Orientalis str. India 195] gi|229694614|gb|EEO84661.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701363|gb|EEO89391.1| sensory histidine kinase in two-component regulatory system with KdpE [Yersinia pestis Pestoides A] gi|262362527|gb|ACY59248.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis D106004] gi|294354940|gb|ADE65281.1| two-component regulatory protein sensor kinase KdpD [Yersinia pestis Z176003] Length = 908 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALYMLETTLSQHQIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + + NG + Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVQGEWLNVDVWDNGPGVTIGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883 >gi|229189481|ref|ZP_04316498.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876] gi|228594072|gb|EEK51874.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876] Length = 466 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + E D + L Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457 >gi|224371000|ref|YP_002605164.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223693717|gb|ACN17000.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 825 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 64/244 (26%), Gaps = 32/244 (13%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50 + + L M+ V L + HD + + I + E++ E + Sbjct: 439 QEKLQLQLNQAQKMESVGRLAGGVAHDFNNMLSIILGNAEIIMEDMDPSNPIVTNLEEIY 498 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 + SS L F R ++ L D+ +++ I D + + Sbjct: 499 KAAERSSSLTRQLLAFARKQTIAPKILNLNHVLADMLKMLMRLIGEDIDLTWNPAPNLWS 558 Query: 111 LSRERAKILLNLFMVAHASLPRGG------------------KVTISVQDSKNENIFSLK 152 + + ++I L + + + + + ++ Sbjct: 559 VKIDPSQIDQILANLCVNARDSIKSVGKVTIETGNISFDEAYCKEHQGFNPGSYVMMAVS 618 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 NG+ ++ + + + V + +N + Sbjct: 619 DNGSGMDKK-ILDKLFEPFFTTKSIGQGTGLGLATVYGIVKQNHGFINVYSEPGEGTTFK 677 Query: 211 ALLE 214 L Sbjct: 678 IYLP 681 >gi|218778320|ref|YP_002429638.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759704|gb|ACL02170.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 452 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 33/245 (13%) Query: 2 AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54 +++ L S + A+ L I HD + + AI EL L E +Q + Sbjct: 65 RRDLETQLERSRKMEAIGTLAGGIAHDFNNILAAIIGYSELAAFDLPEDHPSHAHIQEVL 124 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +S A +K + + SLI L +I + I + + + Sbjct: 125 KASERAKRIIKQILAFSRRSEPEQSLIRLEEILDEVLTLIRASFPSSIEIRKKIFCENDR 184 Query: 115 R-------AKILLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSL 151 ++ +NL A ++ T S+ Sbjct: 185 IMGDSTQLHQVFMNLLTNARHAVSEETGVVEVAVESVDVTDHAWATKHSIIPGPFLKISI 244 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 NG+ +I D + + V + + + + Sbjct: 245 TDNGHGMDEVTL-QRIFDPYFTTKEKGKGTGMGLAVVEGVVTSHFGTITVDSKPGRGATF 303 Query: 210 SALLE 214 + L Sbjct: 304 AIWLP 308 >gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] Length = 793 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 51/243 (20%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K I L A + + H+I +PI + E+L+E + E Sbjct: 250 KKRIAERLQQEKARAEAATETKSRFLATMSHEIRTPINGVLGMAEVLNETRLTPEQTSCT 309 Query: 54 RLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQ 101 S+ L+ + + + D+ ++ A + Sbjct: 310 STILASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAKGVEIC 369 Query: 102 VSWTGEKIDLSR----ERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKING 155 + +IL+NL A ++ G Sbjct: 370 IDIPEHTPPEFIGDSGRVRQILMNLVGNAVKFTLEGHISITLNYDARHNIPLCIDVRDTG 429 Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + L R+ + Sbjct: 430 VGIPEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVSQAGKGSCFT 489 Query: 211 ALL 213 L Sbjct: 490 VCL 492 >gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 673 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 59/226 (26%), Gaps = 28/226 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIRLKF--- 66 + + + H++ +P+ AI E+L E + ++ I + + + Sbjct: 182 SQFLANMSHELRTPLNAIIGYSEILREDAEDLEQEDFIPDLKKIDTAGRHLLGLINDVLD 241 Query: 67 -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAK 117 V+ + + + ++ I + + + + Sbjct: 242 LSKIESGKMDLLIEPVNLDMLIDKVLGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQ 301 Query: 118 ILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172 ILLNL A + ++ + ++ IF + NG + ++ Sbjct: 302 ILLNLLSNAAKFTEQGIIEFQIYHQINTEGDKVIFCVTDNGIGMTEKQ-QEKLFHPFTQA 360 Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + A + + L Sbjct: 361 DSSTTRRYGGTGLGLTITKDFAEMMGGHIKVASDFGFGSTFTLSLP 406 >gi|154484837|ref|ZP_02027285.1| hypothetical protein EUBVEN_02555 [Eubacterium ventriosum ATCC 27560] gi|149733790|gb|EDM49909.1| hypothetical protein EUBVEN_02555 [Eubacterium ventriosum ATCC 27560] Length = 347 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 S + H+ +PI AI LL + + + + + + + Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187 Query: 78 DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124 + I + + + + QV K + I +NL Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKELGFQVELEEVKYTGNEGLFMHIWINLLD 247 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181 A P G +T+ ++ ++ F L+ G F + + + + + Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQADGSHKAEGNGL 307 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + E + L Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340 >gi|119387487|ref|YP_918521.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] gi|119378062|gb|ABL72825.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] Length = 560 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 18/232 (7%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE-----DEV 49 +A+ + + L L + + + H++ +P+ I E +L E + ++ Sbjct: 328 LAQLQGEMVQANKLATLGQITAGVAHEVNTPLATIRLLAENSRHMLPEDAPDLDRNLAQI 387 Query: 50 MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWT 105 +++ + F R A G G V L + Q+ Sbjct: 388 LRMTDRIAQITTELRGFARKATGELGPVPLKDALDAALLLTASRRRAQDIRLTLPQIPPG 447 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKF 164 + + +IL+NL A +L I + S+ NG Sbjct: 448 LRVMAETVRLEQILVNLIQNAQEALEGRPDPEIRITLRDGPVLRLSISDNGPGLSPR-IA 506 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLEK 215 + S + + +A + L E L K Sbjct: 507 ANLFTPFATSKPEGLGLGLVISQEIARDFGGSLTAEPSRAGEGATFHLDLPK 558 >gi|332528170|ref|ZP_08404201.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332112741|gb|EGJ12534.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 585 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 21/234 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--------------LLDEVGIE 46 + + S + ++ + S I H++ P+ AI N E L + Sbjct: 346 LHREQRDQFSRLGILGEMASNIAHELNQPLAAITNYAEGMTRYIDAGRSDTAFLRDGARG 405 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105 + I R A +D ++G V Sbjct: 406 IAGQAERAAVIIRRIRGFVRRRDARREPLDLDVVVGETLPLFAHAAARRAIPLVWRPHGA 465 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 E ++LLNL A + P + ++ + +++ +G+ Sbjct: 466 LPAVNADRIEIEQVLLNLLQNALDATPDGVAHERGIVVTTAQGEAGVELTVRDHGSGL-P 524 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE ++ D + + + + RL D + +L Sbjct: 525 PEVQARLFDPFFTTKPQGLGLGLSICRTIVESHGGRLTASAEADGGATMRVVLP 578 >gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1046 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 61/243 (25%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDE-------VGIEDE 48 A S +L A + + H++ +P+ + LL E Sbjct: 348 AARDDLLRSRAELAAASRYKSEFLANMSHELRTPLNSALILARLLAENREGTLNEEQVKY 407 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------V 96 + ++ + + L+ G V+ + Q++E + Sbjct: 408 ARAIHSANNDLLALINDILDLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLEL 467 Query: 97 DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + + + + ++L NL A G + F++ G Sbjct: 468 RMEIAPGAPAQFLADGQRLQQVLKNLLANAVKFTEHGSVALCIEGHGEGRIRFAVSDTGI 527 Query: 157 LARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + DG+ + LA L E + Sbjct: 528 GIAREQTEVIFEAFRQADGSTSRRFGGTGLGLAISRDLAERMGGSLTVESEPGRGSCFTL 587 Query: 212 LLE 214 L Sbjct: 588 ELP 590 >gi|301061871|ref|ZP_07202601.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300443975|gb|EFK08010.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 622 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 67/244 (27%), Gaps = 32/244 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRL 55 M K+ + + + +L + + I H++ P+ AI L L+ E G +L ++ Sbjct: 377 MEKDAQL-VQASKMKSLGEMSAGIAHELNQPLNAIKMGNDFLILMLEKGRVIPPEKLAQV 435 Query: 56 SSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + F R A V + ++ ++ + + Sbjct: 436 AKEVSAQVSRAXGIIRRLRDFARKADFSKEEVSINDPIMNVVKIFGQQLKLQGMDLRFLP 495 Query: 106 GEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS---------LK 152 G+ I ++ NL A ++ + + ++ + Sbjct: 496 GKNIPTVLGSPNRLEQVFFNLLSNARDAILQNREALNINAGNQITVRSFSLNSRAVISVS 555 Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G + +I + + + V + E+ + Sbjct: 556 DTGVGV-SSDARDKIFEPFFTTKEVGKGMGLGLAIVYEIVVEHGGEVRVHSDVGIGTTFV 614 Query: 211 ALLE 214 L Sbjct: 615 VALP 618 >gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + + + + L + + H++ +P+ AI E + E + + +Q I Sbjct: 1384 LRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQKQALQTIE 1443 Query: 55 LSSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWT 105 S+ + + + +D + + + V Sbjct: 1444 RSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGISINVQIP 1503 Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKING 155 DL + ++L+NL A P GK + K+ F++ G Sbjct: 1504 QALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRFAVIDTG 1563 Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 E+ +++ + + V + + + Sbjct: 1564 IGIN-EEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVGSGSQF 1622 Query: 210 SALLE 214 + Sbjct: 1623 IFEIP 1627 >gi|291278618|ref|YP_003495453.1| hypothetical protein DEFDS_0186 [Deferribacter desulfuricans SSM1] gi|290753320|dbj|BAI79697.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 912 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 18/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60 + + ++ + LL I HD + + +I N + L+ +V+ I Sbjct: 539 REMEELRKNKLESIGLLAGGIAHDFNNILASIKNYISLVKLSGADSIDVIYKIDEIVDQG 598 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRER 115 + + +I L D+ ++ + + + Sbjct: 599 KNISNKLFTLSSGDIIKNDIINLKDVINTAKELSLAGSNITLDINSKINDVYIKGDETQI 658 Query: 116 AKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ NLF+ A ++ + + + +K NG Sbjct: 659 FQVFQNLFINAKEAMKNKGKITLSIETKYISKNLMGLTKGDYALIRVKDNGPGIEEG-II 717 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + + + + I L Sbjct: 718 DKIFDPYFSTKERGSGLGLFITYNIIKNHNGHISIKSIKGEGTEFIIYLP 767 >gi|284166092|ref|YP_003404371.1| multi-sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284015747|gb|ADB61698.1| multi-sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 1064 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/254 (8%), Positives = 60/254 (23%), Gaps = 44/254 (17%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54 + + + ++ A + HD+ P+ I + L+LL+ + + + + Sbjct: 808 RRKLEASNERLEQFAY---AVSHDLQEPLRMITSYLQLLESRYADELDEDAAEFIEFAVD 864 Query: 55 LSSMSAIIRLKFMRLAF-----GYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108 + + + + VD + ++ + + + + Sbjct: 865 GAERMREMIEGLLEYSRVTTRGDPLEPVDLERVVDEVLADLQFRIEDENAEISIESLPRV 924 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------------------------- 143 + ++ NL A + Sbjct: 925 EGDIDQLRQVFQNLVDNAIEYSGDEPPQIEITAERREVSRAAADGPADPNPRADGIAAES 984 Query: 144 KNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE 200 +E + S+ G + F + + I + + + E Sbjct: 985 DDEWVISVADEGIGIDPEDTDRIFEVFERLHTREEHEGTGIGLALCQRIVERHGGEIWVE 1044 Query: 201 IIDDHNVVLSALLE 214 S L Sbjct: 1045 SEPGEGATFSFTLP 1058 >gi|257484781|ref|ZP_05638822.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011167|gb|EGH91223.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 697 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 32/246 (13%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55 +A+ S + A+ L I HD + + I SLELL + ++ R Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 ++ L F R +VD + +E++I + ++V + Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKAVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427 Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151 + ++ LNL + A ++PR + Sbjct: 428 WSTFIDGPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G PE + D + + V ++ ++ + + Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546 Query: 210 SALLEK 215 L + Sbjct: 547 CLYLPR 552 >gi|322421028|ref|YP_004200251.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127415|gb|ADW14975.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 852 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%) Query: 2 AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54 KN+ L S L A+ L + HD + + I LL+ E+++ I Sbjct: 469 RKNLEGQLRHSQKLEAVGHLAGGVAHDFNNILTVIGGYGALLEMKMTADDPGREMVEQIL 528 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107 ++ A + + + L +I Q + F+ +++ Sbjct: 529 AATDRAANLTRSLLAFSRKHEMHPAHCSLNEIIQSVAKFLKRIIGEDIAFEMHLAPLPLT 588 Query: 108 KIDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLK 152 + ++++NL A ++ + + S+ Sbjct: 589 VYADKGQMEQVIINLATNARDAMKNGGVFSIRTETVAMDYRFLEAHGFGTPGDYALISVS 648 Query: 153 INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG + + + V + ++K + E Sbjct: 649 DNGQGMDEATRSMIFEPFFTTKDVGKGTGLGLSIVYGIVQQHKGFIEVESEAGGGTSFRI 708 Query: 212 LLE 214 L Sbjct: 709 YLP 711 >gi|238788972|ref|ZP_04632762.1| Osmolarity sensor protein envZ [Yersinia frederiksenii ATCC 33641] gi|238722999|gb|EEQ14649.1| Osmolarity sensor protein envZ [Yersinia frederiksenii ATCC 33641] Length = 434 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 + + + L+A LL + + HD+ +P+ I + E++ E E + Sbjct: 198 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 257 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ T D LG++ + V + Sbjct: 258 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVMVDIHPLS 317 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 + L N+ + A KV+ + F ++ +G + + F V G+ Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 375 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + + A + Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 418 >gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 959 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 60/241 (24%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55 K L M +L + H++ +P+ + E + + ++ + + +I Sbjct: 578 KEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSESMLDGVAGPLTELQRQNLSMIAK 637 Query: 56 SSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 S + + + + + +I + Sbjct: 638 SGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREIVEVVVVLSKPLIGNKDIELINEIPD 697 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLAR 159 +IL NL A G + + + ++ G Sbjct: 698 DFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITASVLDTDANNSMAVINISDTGIGI- 756 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 PEK +I + + L ++ ++ + + S L Sbjct: 757 LPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVELHQGKIWLDSVVGSGSTFSFTL 816 Query: 214 E 214 Sbjct: 817 P 817 >gi|170702755|ref|ZP_02893612.1| histidine kinase [Burkholderia ambifaria IOP40-10] gi|170132326|gb|EDT00797.1| histidine kinase [Burkholderia ambifaria IOP40-10] Length = 371 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA------- 70 + + + H++ +P+ I+ +E+L + Q I SA + + Sbjct: 1 MLATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSARSLTRMVGDILDASSLA 60 Query: 71 ----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNL 122 VD + D + + V + + ++L NL Sbjct: 61 TGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANL 120 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----- 177 A P GG VT+++ + + G Sbjct: 121 VSNALKFTPGGGAVTVTLSRDDAHAVLIVADTGQGIPPVFIPHVFDMFRRADGSPASPRR 180 Query: 178 SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 + V +A + ++ E + + L Sbjct: 181 GLGLGLSIVRHIAELHGGQVQVESAGCNRGATFTVTLP 218 >gi|158425990|ref|YP_001527282.1| putative sensor protein [Azorhizobium caulinodans ORS 571] gi|158332879|dbj|BAF90364.1| putative sensor protein [Azorhizobium caulinodans ORS 571] Length = 816 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 55/225 (24%), Gaps = 26/225 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + + + H+I +P+ I + L+ + +E + +R+ +A + + Sbjct: 234 SQFLAVMSHEIRTPMNGILGMVRLVLDGPLEAAQRERLRVVLRAAEALQVTLDDVLDLSE 293 Query: 76 SVDSLIGLGDIEQVIEDFIAV---------------DKRVQVSWTGEKIDLSRERAKILL 120 ++ + + + +ILL Sbjct: 294 LEQGARLELAPLELSRVLRDAVDLMRPRADEKGLALEVVLAPDVPPCVHGDAARLRQILL 353 Query: 121 NLFMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG---- 170 NL A G + + + F++ G E+ + Sbjct: 354 NLLGNAIKFTEVGHVRLTVSRTSRPESAGRMGLRFTVADTGIGIHPQERAGLFHEFVQAD 413 Query: 171 -NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L + E + + Sbjct: 414 ASIRRRFGGSGLGLAICKRLVEAMGGEIEVESTPGVGSCFTFEVP 458 >gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1253 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 28/237 (11%) Query: 5 ICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57 + L A L S + H+ +P+ + LE LL + G++ + + Sbjct: 346 EQEQKRAEALAAIDRSKTLFFSNVSHEFRTPLTLMLGPLEELLQQHGLDGHTRVQVEATH 405 Query: 58 MSAIIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102 +A+ LK + Y+ ++ +IE Sbjct: 406 RNALRLLKLVNNLLDYSRVEAGRVQAVYQRLDLQEMTIDLASSFRSIIEKAGMELNVHCS 465 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + KI+LNL A +G + +N + +K G E Sbjct: 466 PLSASYYADRQMWEKIVLNLLSNAFKYTLQGSISVTLEEQ-ENMAVLKVKDTGVGIPQKE 524 Query: 163 K---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + T + I V L H + + E I+ + + Sbjct: 525 LPHMFERFHRIENTAGRTHEGTGIGLSLVHELVHLHAGTITVESIEGTGSTFTVCIP 581 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 19/213 (8%), Positives = 53/213 (24%), Gaps = 19/213 (8%) Query: 21 RICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + H++ +P+ ++ +L L + + + + + S Sbjct: 1034 MVSHELKTPLTSLVGFTQLGLRNAQKNQDSLNFSIYEKTNRQLIKMSSLINGFLNVSQLE 1093 Query: 80 LIGLGDIEQVIEDFIAVDKRV--------QVSWTGEKIDLSRERAK-----ILLNLFMVA 126 + + + + + + ++L + +L NL A Sbjct: 1094 SGKIHLHLTDFRLDELIREMIADAGLAASGYDFQVDCVELIINADRNKIGTVLTNLLSNA 1153 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDI 181 ++I+ + S+ G + + I I Sbjct: 1154 IKYGANSRVISIACSCTDGYARVSVTDQGIGIKEADISKLFDRYYRIENNQTQHISGFGI 1213 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y + + ++ E L L Sbjct: 1214 GLYLSAEIIGRHHGKIWAESEPGKGTTLFVELP 1246 >gi|146280451|ref|YP_001170604.1| signal transduction histidine kinase [Pseudomonas stutzeri A1501] gi|145568656|gb|ABP77762.1| probable signal transduction histidine kinase [Pseudomonas stutzeri A1501] Length = 793 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 29/236 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 + L S + H++ +P+ +I +L L+ + G E++ + + Sbjct: 555 ERKRIERLQRE-----FISTVSHELRTPLTSITGALALVCSNVMGEVPGQMRELLDIAQQ 609 Query: 56 SSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 +S + + + L+ ++ A VQ+ Sbjct: 610 NSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSYAERHGVQLRLGDCP 669 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++L NL A P G +V +S + S++ G E Sbjct: 670 AVQVEIDAMRLQQVLSNLLSNAAKFSPPGEQVELSARMRDGHVRVSVRDRGPGI-SDEFR 728 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L ++ E L Sbjct: 729 ERVFQKFAQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESAPGQGACFWFELP 784 >gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio angustum S14] gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio angustum S14] Length = 1311 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + + +L++ + + + + H+I +PI I + LEL++ E+ Q+ S S Sbjct: 665 LMEANEKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHVKTTELRQIHHNLSQSG 724 Query: 61 IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 L + + D + L + + + + Sbjct: 725 RNLLNIVNDVLDFSKIEAGKLSINPSENNISDLIHELVQPHSIHAQQKEITFTLWLDPAI 784 Query: 107 EKI--DLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160 +IL NL A I S+ FS+ G + Sbjct: 785 AHCLLFDEVRLTQILNNLINNAIKFTVQGNIHLAVDMIQESASQQRLTFSIIDTGIGIKP 844 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ V + LA ++ + + S + Sbjct: 845 EDL-QRLFQPFVQVEQNSNRRFSGTGLGLSICHQLAQLMGGEIVAKSDINIGTTFSVTIP 903 >gi|330447754|ref|ZP_08311402.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491945|dbj|GAA05899.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 488 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 18/228 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSA 60 + + L + + HD+ +P+G+I + L + D +L++ + Sbjct: 251 QVKEANQLEQMRNTLLAAVSHDLKTPLGSIIGTATTLSDPNICLPADTQKELLQSIAEEG 310 Query: 61 IIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------WTGEKI 109 + + + V + E + V++ V+ T Sbjct: 311 YSLNRSLTKLLDISRYSIKTLVPKRDWVEPEEIIGSATKRVEQLVKFHPIKLTGETMLVS 370 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 +I+ NL A P G + IS +F + G PE +I + Sbjct: 371 LDYALIEQIMANLIENAAKYSPIGAAIDISTGYHDGCFLFDIADRGCGV-APEDTQRIFE 429 Query: 170 GNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L+ + + + S + Sbjct: 430 RFYRSEHTKVKGTGLGLAICKLIVSAHNGTINVTSRAGGGSIFSVAIP 477 >gi|310824271|ref|YP_003956629.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397343|gb|ADO74802.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 407 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 19/240 (7%), Positives = 48/240 (20%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEV 49 + L S H++ +P+ + LE L + Sbjct: 164 TREFEQLLQKEREGVKSRDEFLSIAAHELRTPLTPLKLQLETLRRSVVAAGIDDPWVMRH 223 Query: 50 MQLIRLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDK 98 ++ + + + + I + D Q + Sbjct: 224 LERSSVQVQRLLQLVDRLLDVSRIATGRLGLLLEDMDLSALTIEVTDRFQEEAEGAGCPL 283 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 V + ++L +L A + ++ G Sbjct: 284 EVHTPGRVRGVWDQLRLEQVLSSLISNAIKYGAGHPIDVSVEGK-EEVVRLCVQDQGIGL 342 Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + Y + + + +L K Sbjct: 343 APEDASRIFERFERAVSPKHYGGMGLGLYVARQIIEAHGGTIAVRSQPGRGATFIVVLPK 402 >gi|288553507|ref|YP_003425442.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288544667|gb|ADC48550.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 660 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 26/235 (11%) Query: 2 AKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQL 52 + L AL + + I H+I +P+ +I EL L + E+ Sbjct: 420 TEERQMRLQVFEQEKSQALSRVVAGIAHEIRNPLTSIKTFAELIPKKLHNERFQREISTY 479 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWT 105 + ++ + + L D+ + + R+ + Sbjct: 480 VPKEIDRVNQLIEGLIDYARPREHEKESVQLTDLVRDCAILFERTLLNKGINLRLDLQEE 539 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---------TISVQDSKNENIFSLKINGN 156 S + ++++NL + ++ + + + + ++ +F ++ NG Sbjct: 540 QFIYANSNQVKQVIMNLIINGIDAIEDVDEKRKEARDGELCLRLDVNGSDVVFMIEDNGI 599 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 E+ ++++ + + HEN+ LL E + ++ Sbjct: 600 GM-TEEETQKVLEPFYTTKTKGTGLGLAIAHQYVHENEGSLLIESKEGIGTKVTL 653 >gi|225868205|ref|YP_002744153.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi subsp. zooepidemicus] gi|225701481|emb|CAW98633.1| putative alkaline phosphatase synthesis sensor protein [Streptococcus equi subsp. zooepidemicus] Length = 441 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 59/215 (27%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFGY 73 + H++ +P+ +I E + E+ ++ ++ + S I + L+ Sbjct: 223 ANASHELRTPVTSIKGFAETIKEMPDDETSLKEDFLDIIYNESLRLERIVEHLLTLSKAN 282 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMV 125 +D + + + + ++I+LNL Sbjct: 283 KTPLDLTEFQLRSFLLYTGQSMRPQLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSN 342 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A GG++ +S Q ++ G E +I + Sbjct: 343 AIQYTDNGGRIQLSSQRVAGGVAITVADTGIGISQIEL-DRIFERFYRVNKGRSRQSGGT 401 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L+ ++ + L Sbjct: 402 GLGLAIVKELSQLLGGQITVTSQLGEGSQFTLFLP 436 >gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 699 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 58/238 (24%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + + + I H+I +P+ AI ELL + + + Sbjct: 305 LAQARMQAEDASQTKSQFLANISHEIRTPMTAILGYTELLRDGSLNATDKRRYLTIIQHN 364 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGD-----------------IEQVIEDFIAVDKRVQVS 103 L + +++ + + E I + Sbjct: 365 GDALLALINDVLDLSRIEAGQLHPEQRLFSARVLLDEVIDSLQLRATEKDIDLRIHYLTD 424 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +IL+NL A R V ++ + + S++ G E Sbjct: 425 LPPTVSGDAFRLRQILVNLIGNAVKFTERGRVHVGVNWDEEASRLNVSVEDTGIGISEGE 484 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + LA + + + Sbjct: 485 LS-RIFLPFSQADASHTRRYTGTGLGLSIARQLARAQDGDIQVFSTLNQGSCFVLDIP 541 >gi|186896336|ref|YP_001873448.1| sensor protein KdpD [Yersinia pseudotuberculosis PB1/+] gi|186699362|gb|ACC89991.1| osmosensitive K+ channel signal transduction histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 908 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + +++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALHMLKTTLSQHQIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + + NG + Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVKGEWLNVDVWDNGPGVTIGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883 >gi|184155773|ref|YP_001844113.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO 3956] gi|183227117|dbj|BAG27633.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO 3956] Length = 504 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 18/220 (8%), Positives = 58/220 (26%), Gaps = 21/220 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 + + H++ +P+ I ++LL+ G +D + + ++ + + + L Sbjct: 268 SQFVGDVSHELRTPVAIIQGHMQLLERWGKDDPKQLEESIQAALAETNRMNTLIKEMLDL 327 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EKIDLSRERAKIL 119 V+ +++++ + + + +IL Sbjct: 328 TRAGQVEVNFRNATTPVKKLVNQVYDNFRMIHPDFHFSLDDDLDEDVLVPVYRDHLEQIL 387 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174 + L A ++ +S+ + ++ G + Sbjct: 388 IILCDNAVKYSNERKEIHLSLSRNLRAVEIGVQDFGEGISQEDLHRVFDRFYRVDKARSR 447 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + L Sbjct: 448 KKGGNGLGLAIAKRLVEGYHGTVTVESQLGSGSLFRITLP 487 >gi|218780092|ref|YP_002431410.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761476|gb|ACL03942.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 593 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 65/245 (26%), Gaps = 32/245 (13%) Query: 1 MAKNICFNL-----SSMDLVAL--LCSRICHDIISPIGAI---HNSL-ELLDEVG----- 44 MA + + L +L L + I H+I +P+ + + +LL+E Sbjct: 335 MADREKEMMNEKVIEAGKLASLGELAAGIAHEINNPVAIMVEESGWIGDLLEEDEFGDTE 394 Query: 45 ---IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDF 93 + I+ + T + + ++ Q + Sbjct: 395 NVAEISRSVAQIKTQGDRCKEITHKLLSFARRTDPRQQEVNMNELIGEVVDLSSQRAKYA 454 Query: 94 IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSL 151 +V E ++LLNL A ++ +VTIS ++ + Sbjct: 455 NVKVHQVLDDNLNLIQASPSELQQVLLNLINNAIDAIDHKQGGEVTISTENGDGVVNIHV 514 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G ++ D + + + + ++ Sbjct: 515 ADTGQGI-PDAVLKRVFDPFFTTKPVGKGTGLGLSICYGIIEKMGGKISVNSSVGVGATF 573 Query: 210 SALLE 214 L Sbjct: 574 HISLP 578 >gi|149918425|ref|ZP_01906915.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1] gi|149820725|gb|EDM80135.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1] Length = 596 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 67/234 (28%), Gaps = 22/234 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54 +N + M+ V L I HD + + I +L++ E+ ++ Sbjct: 213 ENQVRHSQKMEAVGRLAGGIAHDFNNLLTVIMGMCDLMELEDELAEQAFERVSEIRRVSD 272 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL 111 + + F R D + + +++ I+ Sbjct: 273 TARELVAQLMTFSRRQVMRGQIFDLNEHIRNSVRMLGRLISERIELALCLWESPLWIKTD 332 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----------SKNENIFSLKINGNLARFP 161 + +IL+NL + A ++P+GG++ + S++ + + G Sbjct: 333 PNQLDQILINLVVNASDAMPQGGRIELRTSQGRAPERLDSASEHHVLLEVADTGTGIPED 392 Query: 162 EKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++K + + H L Sbjct: 393 VLPHIFDPFFTTKKAGSGTGLGLANVYGIVEQSKGHVTVDSALGHGTCFCVFLP 446 >gi|149181573|ref|ZP_01860067.1| sporulation kinase B [Bacillus sp. SG-1] gi|148850687|gb|EDL64843.1| sporulation kinase B [Bacillus sp. SG-1] Length = 409 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 63/231 (27%), Gaps = 18/231 (7%) Query: 1 MAKNICFN----LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49 M N L +++V + + I H+I +P+ + ++ L E +++ Sbjct: 170 MKTNKQIEEMVYLDKLNMVGQMAASIAHEIRNPLSTVKGFIQHLSEDTKDEQFKRFSPLI 229 Query: 50 ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + K + + + D+ + + + Sbjct: 230 LEELDRTNKIITDYLSITKPEKFHVSVINLTNVIQSSVDLLRPYAAYSNTSIVLNTDNEY 289 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPEK 163 + ++N+ S + + + NG E+ Sbjct: 290 YIEGDEHHLKQAIMNVIKNGIESTEDKRGIVRIEISTGMLTDTVEIRISDNGIGM-TSEQ 348 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++I + + + E ++ + + V+ +L Sbjct: 349 LSKIGLPFYTTKTKGTGLGSMVTNKIIRELHGKIEYDSQPEKGTVVRIVLP 399 >gi|148264419|ref|YP_001231125.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] gi|146397919|gb|ABQ26552.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 769 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 69/244 (28%), Gaps = 31/244 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQ 51 K+I + + A+ L I HD + + I+ LL +++++ Sbjct: 377 KKSIEQLRQAQKMEAIGQLAGGIAHDFNNLLTIINGYSTLLLRSLGIDSPQHKEAEQILR 436 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L F R ++ + +IE+++ I + + + + Sbjct: 437 AGERAADLTRQLLSFSRKQILAPKVLNINTQVKNIEKMLCRLIGEHITLVTNMDPDVGLI 496 Query: 112 SRERAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKI 153 + ++ + +A + L + + S+ Sbjct: 497 KIDPGQVEQIIMNLAVNARDASEDGGRIVIETANAELDDEFAANHPGSVPGSYIMLSVCD 556 Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG + ++ + + + V + ++ + + Sbjct: 557 NGMGM-SEDVKRRLFEPFFTTKELGRGTGLGLATVYGIVKQSGGYIDITSELEQGATFKI 615 Query: 212 LLEK 215 L + Sbjct: 616 FLPR 619 >gi|157369488|ref|YP_001477477.1| sensor protein KdpD [Serratia proteamaculans 568] gi|157321252|gb|ABV40349.1| osmosensitive K+ channel signal transduction histidine kinase [Serratia proteamaculans 568] Length = 897 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 70/231 (30%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52 A+ + L L + + HD+ +P+ + E+L + ++ Q Sbjct: 653 AEEAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSNHATQASQIRQQ 712 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKI 109 + ++ L R+ G L +I + + + +++V E + Sbjct: 713 VLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGASLHMLEPLMTQHQIKVELPAELV 772 Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163 ++ + ++ NL A+ + I + +G Sbjct: 773 LVNCDGSLLERVFTNLLENANKYAGYDATIGIRAHTLPEWLEVEVWDDGPGIPEGKMQLI 832 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 833 FDKFSRGNKESAIPGVGLGLAICRAIIEVHGGRIWAENGANGGASFRFVLP 883 >gi|150017638|ref|YP_001309892.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904103|gb|ABR34936.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 523 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 27/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRL 55 K ++ L I H++ +P+ I + +LL+ ++D ++ + + Sbjct: 254 KTNKIMEKTLKSQEELLVNISHELKTPLNVISATAQLLEMYYMDDSIINKKDILIKYFKS 313 Query: 56 SSMSAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ K + + + + V + Sbjct: 314 IKLNTYRLSKLINNIVDTSKIEAGFFELNLLNVNIVNVVEEIVMSVTSFVKIKGLNIIFD 373 Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 E+ ++ + +I+LNL A G++ + V+D S+K NG Sbjct: 374 TNTEEKIIACDPEKIERIMLNLISNATKFSNDNGEIFVKVKDMNEWVEISVKDNGIGIEE 433 Query: 161 PE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + + + I V +A + + E + L Sbjct: 434 KKMDIIFDRFEQADKSLSRNAEGTGIGLSLVKSIALLHGGSINVESEYGKGSKFTVTLP 492 >gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1080 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 63/217 (29%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA---------------IIRL 64 + + H++ +P+ I +LL + + +Q + I Sbjct: 720 AVLSHELRTPLNPILGWAKLLQSPLVSSDKLQQGLSAIERNAKQQVQLVEDLLDISRIIR 779 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLF 123 + L+FG + + + ++ + A+ V + + ++ +R +++ NL Sbjct: 780 GKLTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDADRLQQVVWNLL 839 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDS 178 A GG VT+ + + G + D + + Sbjct: 840 SNAIKFNSTGGWVTVQLTSVDRHAQIQVSDTGKGIQPEFLPHVFELFQQQDSSSTRSFGG 899 Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + + + + L Sbjct: 900 LGLGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLP 936 >gi|320353025|ref|YP_004194364.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121527|gb|ADW17073.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1020 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 60/241 (24%), Gaps = 29/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58 + ++ V L + HD + + AI EL +++I S++ Sbjct: 639 REQLSQAQKLESVGRLAGGVAHDFNNMLSAILGHAELAMRLCAPNDPIHARLEVIEQSAL 698 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113 + + + ++ + + + + + Sbjct: 699 RSADLVSQLLAFARKQTVAPKVLDMNETAASLLRMLQRLMGEDIDLVWIPKIDLWPIKID 758 Query: 114 --ERAKILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKINGN 156 + ++L NL + A ++ G + ++ NG+ Sbjct: 759 PSQIDQLLANLCVNARDAISGVGKVVIETGNATFDASYCAVHPDFVPGEYVMLAVSDNGD 818 Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + + V + +N + L Sbjct: 819 GM-DKDTLAHIFEPFFTTKEPGKGTGLGLATVYGIVKQNNGFIHVYSEPAKGTTFKIYLP 877 Query: 215 K 215 + Sbjct: 878 R 878 >gi|293380725|ref|ZP_06626773.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Lactobacillus crispatus 214-1] gi|290922689|gb|EFD99643.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Lactobacillus crispatus 214-1] Length = 522 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 60/237 (25%), Gaps = 25/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50 M + + + H++ +P+ I L LL+ G +D + Sbjct: 264 MLDRMQGYIEQQK---QFVGDVSHELRTPVAVIEGHLNLLERWGKDDPQILDESIKASLQ 320 Query: 51 --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103 ++ + + ++ Y V + + + D ++Q+ Sbjct: 321 EADRMKHLIQEMLDLTRAEQIDVQYPYEVSDVNEIIRRVVADMAMVHPDFKIQLDEDDLP 380 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E ++L+ L ++ +S +K ++ G ++ Sbjct: 381 DDTEIQMYHGHLEQLLVILIDNGIKYSTDRKQINVSAGVTKKNVNIIVQDFGEGISEEDQ 440 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L + E ++ + Sbjct: 441 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVASYNGTISVESVEGQGSQFKLKFPR 497 >gi|289566982|ref|ZP_06447384.1| sensor histidine kinase [Enterococcus faecium D344SRF] gi|293568417|ref|ZP_06679737.1| two component sensor kinase [Enterococcus faecium E1071] gi|294613961|ref|ZP_06693893.1| two component sensor kinase [Enterococcus faecium E1636] gi|289161217|gb|EFD09115.1| sensor histidine kinase [Enterococcus faecium D344SRF] gi|291588753|gb|EFF20581.1| two component sensor kinase [Enterococcus faecium E1071] gi|291593155|gb|EFF24732.1| two component sensor kinase [Enterococcus faecium E1636] Length = 347 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 21/236 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51 + K+ + ++ L S + H+ +P+ I ++LL + + + + Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVS 103 +I + + + ++L + I + + + + Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230 Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 + E ++ LN+ A G++ I + ++ E + + +G Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQINGQIHIKLFETATEIVLEVTDSGVGMNEET 290 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ I + + V + + R+ I+ L K Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 346 >gi|269961140|ref|ZP_06175508.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834091|gb|EEZ88182.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 987 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 24/235 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ S L + + H+I +P+ + + LL + G+ + + + S Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516 Query: 62 IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105 L + Y+ D + D Q++ ++ Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVG 576 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163 ++L NL A +G + + + +F + G ++ Sbjct: 577 RYWKGDVIRINQVLNNLVGNAIKFTEQGEIDIYVSLNPEDETQVLFEVSDTGIGIAKKDQ 636 Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + + L + + H + Sbjct: 637 KTLFDAFTQAEGGMNQTGGTGLGLAISRRIIQAMGGCLEVDSDEGHGSRFWFSIP 691 >gi|260596768|ref|YP_003209339.1| phosphate regulon sensor protein [Cronobacter turicensis z3032] gi|260215945|emb|CBA28551.1| Phosphate regulon sensor protein phoR [Cronobacter turicensis z3032] Length = 437 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 63/215 (29%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 + + H++ +P+ + LE++ E +E + + + R++ + +++ Sbjct: 209 ANVSHELRTPLTVLQGYLEMMHEQTLEGPLREKALHTMREQTYRMEGLVKQLLTLSKIEA 268 Query: 80 LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + E + + +V + + + + NL Sbjct: 269 APAMQLNETIDVPMMLRVVEREAQTLSQQRQTFTFEVDPQLKVLGNDEQLRSAISNLVYN 328 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+ + N FS+ G E ++ + Sbjct: 329 AVNHTPAGTHITVRWEHVANGARFSVADTGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + RL E S LL Sbjct: 388 GLGLAIVKHALTHHDARLEIESAPGKGTTFSFLLP 422 >gi|227877765|ref|ZP_03995798.1| two-component sensor histidine kinase [Lactobacillus crispatus JV-V01] gi|256843616|ref|ZP_05549104.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN] gi|256850092|ref|ZP_05555522.1| two-component sensor [Lactobacillus crispatus MV-1A-US] gi|262047380|ref|ZP_06020337.1| two-component system sensor kinase [Lactobacillus crispatus MV-3A-US] gi|312984346|ref|ZP_07791688.1| sensor histidine kinase [Lactobacillus crispatus CTV-05] gi|227862624|gb|EEJ70110.1| two-component sensor histidine kinase [Lactobacillus crispatus JV-V01] gi|256615036|gb|EEU20237.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN] gi|256713064|gb|EEU28055.1| two-component sensor [Lactobacillus crispatus MV-1A-US] gi|260572354|gb|EEX28917.1| two-component system sensor kinase [Lactobacillus crispatus MV-3A-US] gi|310894271|gb|EFQ43351.1| sensor histidine kinase [Lactobacillus crispatus CTV-05] Length = 525 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 60/237 (25%), Gaps = 25/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50 M + + + H++ +P+ I L LL+ G +D + Sbjct: 267 MLDRMQGYIEQQK---QFVGDVSHELRTPVAVIEGHLNLLERWGKDDPQILDESIKASLQ 323 Query: 51 --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103 ++ + + ++ Y V + + + D ++Q+ Sbjct: 324 EADRMKHLIQEMLDLTRAEQIDVQYPYEVSDVNEIIRRVVADMAMVHPDFKIQLDEDDLP 383 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E ++L+ L ++ +S +K ++ G ++ Sbjct: 384 DDTEIQMYHGHLEQLLVILIDNGIKYSTDRKQINVSAGVTKKNVNIIVQDFGEGISEEDQ 443 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L + E ++ + Sbjct: 444 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVASYNGTISVESVEGQGSQFKLKFPR 500 >gi|182701639|ref|ZP_02612274.2| sensor histidine kinase [Clostridium botulinum NCTC 2916] gi|182671523|gb|EDT83497.1| sensor histidine kinase [Clostridium botulinum NCTC 2916] Length = 417 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 21/235 (8%) Query: 1 MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + K+I + L I H++ +PI + LE + + E ++ I Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236 Query: 55 LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105 + VD + I + + D +QV Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296 Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 I + +++ ++++N+ A G++ + + S+K +G + Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTSDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356 Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + I + + + D L Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411 >gi|206977367|ref|ZP_03238263.1| sporulation kinase B [Bacillus cereus H3081.97] gi|217961495|ref|YP_002340065.1| sporulation kinase B [Bacillus cereus AH187] gi|222097456|ref|YP_002531513.1| sporulation kinase b [Bacillus cereus Q1] gi|229140739|ref|ZP_04269286.1| hypothetical protein bcere0013_38340 [Bacillus cereus BDRD-ST26] gi|206744358|gb|EDZ55769.1| sporulation kinase B [Bacillus cereus H3081.97] gi|217065675|gb|ACJ79925.1| sporulation kinase B [Bacillus cereus AH187] gi|221241514|gb|ACM14224.1| sporulation kinase B [Bacillus cereus Q1] gi|228642712|gb|EEK98996.1| hypothetical protein bcere0013_38340 [Bacillus cereus BDRD-ST26] Length = 424 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|218781499|ref|YP_002432817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762883|gb|ACL05349.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1372 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 61/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 M + + + M+ + L I HD + + I ELL E G+E E + I + Sbjct: 989 MERRLQ-QIQKMESIGNLAGGIAHDFNNILSPIIGMSELLLEDLPANGLEYENAEEIFKA 1047 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---- 112 +K + + + + + + + + + Sbjct: 1048 GKRGSELVKQILAFSRQSEKTMIPTRIQSVLKEVLKLCRSTIPINIEIYQDIQADCGLIL 1107 Query: 113 ---RERAKILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKING 155 + ++ +NL A+ ++ + + + S+ NG Sbjct: 1108 ADSTQIHQVAMNLITNAYHAIEKTKGKISISLTESSFDSLSMKTDLEPGKYAVLSVSDNG 1167 Query: 156 NLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E+K + Sbjct: 1168 HGISPDMINKIFDPYFTTKEKGKGTGLGLSVVYGIMKEHKGDIFVNSEVGKGTTFELYFP 1227 >gi|119492094|ref|ZP_01623547.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119453304|gb|EAW34469.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 486 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 65/203 (32%), Gaps = 11/203 (5%) Query: 23 CHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 H++ +PI I LE L + + ++++L++ + + L Sbjct: 283 SHELRTPITIIDCHLEQLTTDSQEQKKIVKLLKDELNRMNRLVNDLLLLAKAERPDFLNC 342 Query: 82 GLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 + +I + E+ + ++V TG I + + LNL A Sbjct: 343 EIVEIGSLTEELYTKATTLAKRNWCLEVKGTGRIIADPQRLTQAFLNLAHNATKYTSEDD 402 Query: 135 KVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191 +T+ SK + ++ G + F + + + V +A Sbjct: 403 VITVGATISKGKFSLWVRDTGEGIDTAHQKKIFERFERDVNGRRSEGLGLGLAIVKAIAS 462 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 ++ + E + ++ Sbjct: 463 AHQGWVELESQVGIGATFTIVIP 485 >gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] Length = 853 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 24/234 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + + + + H+I +P+ AI ++++ E ++ + + + SA Sbjct: 266 MRDSAE---QANRSKSDFLANMSHEIRTPMNAIIGFVDIVLEGDLDQKQSKHLMTVRNSA 322 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104 + + L ++ + +R+ Sbjct: 323 KDLHNLLNDILDVAKLEAGKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIAEDL 382 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + + + ++L+NL A G Q ++ + F ++ G + Sbjct: 383 PAQFLGDALRLKQVLMNLIGNAIKFTASGSITIAVEQINQEQLQFIIRDTGIGIAKDKLE 442 Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 D + + L ++ E + L Sbjct: 443 HIFESFTQADTSTSRKYGGTGLGTTISKRLVELMGGKIWLESDEGVGTTFYFTL 496 >gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 573 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 63/243 (25%), Gaps = 30/243 (12%) Query: 2 AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEV------GIED 47 K L + A + + H++ +P+ AI +LL + + Sbjct: 327 RKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQQ 386 Query: 48 EVMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 E + I S + + + + + + + V + I+ Sbjct: 387 EYINCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGL 446 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGN 156 ++ E + +I L + ++ + V+ F + G Sbjct: 447 KLTQEIDPEANICIADDRRIKQMLLNLLTNAIKFTSVGEVSLIVKRVPEGINFIISDTGI 506 Query: 157 LARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + + +D + + + LA + + + Sbjct: 507 GIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVGSQFTL 566 Query: 212 LLE 214 L Sbjct: 567 FLP 569 >gi|153948325|ref|YP_001400084.1| sensor protein KdpD [Yersinia pseudotuberculosis IP 31758] gi|152959820|gb|ABS47281.1| sensor protein KdpD [Yersinia pseudotuberculosis IP 31758] Length = 908 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALHMLETTLSQHQIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + + NG + Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVKGEWLNVDVWDNGPGVTIGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883 >gi|330862949|emb|CBX73084.1| sensor protein kdpD [Yersinia enterocolitica W22703] Length = 899 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I ++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHILETTLNHHHIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + NG + Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + L Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883 >gi|289626968|ref|ZP_06459922.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651376|ref|ZP_06482719.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. aesculi str. 2250] gi|330869188|gb|EGH03897.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 530 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 19/228 (8%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 I + L AL L + I H+I +P+GA+ ++ +LL + + +L ++ Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355 Query: 60 AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + R +D L A ++ + V + + Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSSAPNQSIHVDISPGTLTTR 415 Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ + R + + + I ++ +G Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + + + Y L N+ L L Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522 >gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 364 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 51/229 (22%), Gaps = 16/229 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + S L + + I H+I P+ AI LL + + + I L + Sbjct: 129 MEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGELRQEYINLIQTNN 188 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTG 106 + D + + + + + + Sbjct: 189 ELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRGVALTYPASLDSF 248 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++L N A G + +NE + S+ G K Sbjct: 249 LLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAM-ENEVLLSVTDTGEGMSEEIKLHV 307 Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + R+ L Sbjct: 308 FDRFYKGRNQKQGIGLGLSICQNIVERLGGRIGVSSEQGKGSCFWCTLP 356 >gi|227515635|ref|ZP_03945684.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931] gi|260663511|ref|ZP_05864401.1| two-component sensor histidine kinase [Lactobacillus fermentum 28-3-CHN] gi|227086065|gb|EEI21377.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931] gi|260552052|gb|EEX25105.1| two-component sensor histidine kinase [Lactobacillus fermentum 28-3-CHN] Length = 501 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 18/220 (8%), Positives = 58/220 (26%), Gaps = 21/220 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69 + + H++ +P+ I ++LL+ G +D + + ++ + + + L Sbjct: 265 SQFVGDVSHELRTPVAIIQGHMQLLERWGKDDPKQLEESIQAALAETNRMNTLIKEMLDL 324 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EKIDLSRERAKIL 119 V+ +++++ + + + +IL Sbjct: 325 TRAGQVEVNFRNATTPVKKLVNQVYDNFRMIHPDFHFSLDDDLDEDVLVPVYRDHLEQIL 384 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174 + L A ++ +S+ + ++ G + Sbjct: 385 IILCDNAVKYSNERKEIHLSLSRNLRAVEIGVQDFGEGISQEDLHRVFDRFYRVDKARSR 444 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + E + L Sbjct: 445 KKGGNGLGLAIAKRLVEGYHGTVTVESQLGSGSLFRITLP 484 >gi|218901767|ref|YP_002449601.1| sensor histidine kinase [Bacillus cereus AH820] gi|228913259|ref|ZP_04076895.1| hypothetical protein bthur0012_5030 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925761|ref|ZP_04088845.1| hypothetical protein bthur0010_4870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944326|ref|ZP_04106699.1| hypothetical protein bthur0007_5000 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120223|ref|ZP_04249474.1| hypothetical protein bcere0016_5390 [Bacillus cereus 95/8201] gi|218534805|gb|ACK87203.1| sensor histidine kinase [Bacillus cereus AH820] gi|228663264|gb|EEL18853.1| hypothetical protein bcere0016_5390 [Bacillus cereus 95/8201] gi|228815228|gb|EEM61476.1| hypothetical protein bthur0007_5000 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833776|gb|EEM79329.1| hypothetical protein bthur0010_4870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846398|gb|EEM91414.1| hypothetical protein bthur0012_5030 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 392 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 170 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 229 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + I + + ++V + ++++ Sbjct: 230 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 289 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 290 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 349 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E +L K Sbjct: 350 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 388 >gi|213584048|ref|ZP_03365874.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 396 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 63/221 (28%), Gaps = 24/221 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++ + + H++ +P+ I +L+LL + V +L+ + S+ + LK + ++ Sbjct: 1 SMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSK 60 Query: 76 SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119 + + E + + ++ +++ Sbjct: 61 IESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVI 120 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173 NL A G + + V+ + ++ G E ++ D + Sbjct: 121 SNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPAKEVV-RLFDPFFQVGTGVQ 178 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + + Sbjct: 179 RNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 219 >gi|170750776|ref|YP_001757036.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657298|gb|ACB26353.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 946 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 62/241 (25%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53 + S L A+ L + HD + + I +S+E L + +E + Sbjct: 551 RQAEEALRQSQKLEAIGQLTGGVAHDFNNLLTIIRSSVEFLRRPELAEERRRRYLDAVSD 610 Query: 54 --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 ++ L F R D L I +++ RV + + Sbjct: 611 TVDRAAKLTGQLLAFARRQALKPQVFDIGARLRSIADMLDSVTGARIRVTIDLPETPRYV 670 Query: 112 SRERAKILLNLFM---VAHASLP-------------RGGKVTISVQDSKNENIFSLKING 155 + ++ L A ++ + + + G Sbjct: 671 RADESQFETALINMAVNARDAMDGEGSLILRLEGDSPMPPIRGHAGATGPFVAVRVSDTG 730 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I + + + VI A ++ + H S L Sbjct: 731 AGIPDADLG-RIFEPFFTTKEVGKGTGLGLSQVIGFAKQSGGDIDVASALGHGTTFSLYL 789 Query: 214 E 214 Sbjct: 790 P 790 >gi|196041328|ref|ZP_03108622.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196027813|gb|EDX66426.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 416 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + I + + ++V + ++++ Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 373 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E +L K Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 412 >gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus] Length = 2370 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 28/238 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 +N+ + +L + + H++ +P+ + ELL + E + A Sbjct: 1876 RNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPLNGEQSGYADSIRVCADT 1935 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTG 106 L + Y+ + + ++ + + IA +++++ Sbjct: 1936 LLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELDPEM 1995 Query: 107 EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +IL+NL ++ PR V + S+ G E Sbjct: 1996 LVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEWADVTCSVIDTGIGI-PDE 2054 Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213 + ++ + + + L + + ++ L Sbjct: 2055 QKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTFSL 2112 >gi|49480165|ref|YP_034831.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165871798|ref|ZP_02216442.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167635651|ref|ZP_02393962.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167640635|ref|ZP_02398896.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170688537|ref|ZP_02879744.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|177653773|ref|ZP_02935874.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190568161|ref|ZP_03021070.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|196035747|ref|ZP_03103150.1| sensor histidine kinase [Bacillus cereus W] gi|227816557|ref|YP_002816566.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|254684350|ref|ZP_05148210.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254722152|ref|ZP_05183941.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254738814|ref|ZP_05196517.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254743800|ref|ZP_05201484.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254755038|ref|ZP_05207072.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254762228|ref|ZP_05214072.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|49331721|gb|AAT62367.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712523|gb|EDR18056.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167511350|gb|EDR86735.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167528910|gb|EDR91666.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170667562|gb|EDT18318.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172081165|gb|EDT66241.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190560653|gb|EDV14629.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|195991714|gb|EDX55679.1| sensor histidine kinase [Bacillus cereus W] gi|227007313|gb|ACP17056.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] Length = 416 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + I + + ++V + ++++ Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 373 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E +L K Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 412 >gi|51245776|ref|YP_065660.1| Ntr family two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50876813|emb|CAG36653.1| related to two-component system sensory/regulatory protein (Ntr family), probably cold-shock inducible [Desulfotalea psychrophila LSv54] Length = 1014 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 64/242 (26%), Gaps = 31/242 (12%) Query: 4 NICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQL 52 + L + + A+ L I HD + + I EL + D+V++ Sbjct: 632 KLELRLRQAQKMEAIGALAGGIAHDFNNILAVILGYAELAKDEIPANSIIGEDLDQVIEG 691 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + L F R + + L + +++ + +Q + Sbjct: 692 GNRAKELVKQILAFSRQEKVKRLPLQVQVLLKETMRMLRPSLPSTIEIQTEIDPLCGFVL 751 Query: 113 RER---AKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLKI 153 + +I++NL A+ ++ + G S + + + Sbjct: 752 ADPTQVHQIIMNLCTNANHAMEKSGGRLDIELKRISVDEGNRHKYSSLVPGDYVVLVVAD 811 Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G I + + + E + +H V S Sbjct: 812 TGEGIAPHNIGKIFEPYFTTKEIGKGTGMGLATIHGIIREYGGIIDVASDPEHGSVFSVF 871 Query: 213 LE 214 Sbjct: 872 FP 873 >gi|88860218|ref|ZP_01134856.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817416|gb|EAR27233.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 915 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 36/246 (14%) Query: 4 NICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 + ++ +L + + + H++ +P+ AI SLELL E +LI +SMS Sbjct: 385 ELTQAITQAELASKIKSEFLAMMSHELRTPMNAIIGSLELLSLSINAHEESELINTASMS 444 Query: 60 AIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 A + + T D + +I + E + + K Sbjct: 445 AHNLVNILNDILDINKIESGKLEIETHDFDHQQLIYNIVKTFESTASNQGVTLIIHEDTK 504 Query: 109 IDLS-----RERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKIN 154 + +I++N+ A + E I+ + Sbjct: 505 MPPIVSGDEIRVRQIIMNIISNAVKFTAGNDKEIKIVTFCIQWRQIGGCLFEIIYEIIDT 564 Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G E ++ + + LA + + Sbjct: 565 GIGIN-QETQKRLFTPFIQAEKSTTRKFGGTGLGLAISGKLADMMGGSIELKSHVGIGSK 623 Query: 209 LSALLE 214 + L Sbjct: 624 FTIKLP 629 >gi|84687059|ref|ZP_01014942.1| C4-dicarboxylate transport sensor protein DctB, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665033|gb|EAQ11514.1| C4-dicarboxylate transport sensor protein DctB, putative [Rhodobacterales bacterium HTCC2654] Length = 596 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 22/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48 + S L AL + + + H++ P+ A+ L LL E Sbjct: 350 LQVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRKRPEEALSSFQR 409 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----W 104 + LI + + R +D + ++E + + Sbjct: 410 IDDLIERMGLITKQLKSYARKGGDAFQPMDVRQSVSMALSMMEPQLKRRQVRITRNVPRE 469 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163 + + ++L+NL A + + + + + S++ NG E Sbjct: 470 PVMIMGDNVRLEQVLINLLRNAIDATKSVDDPQVDILLTGGEQVVISVRDNGPGV---ED 526 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q+ + + D + + + RL V L Sbjct: 527 LDQLFEPFYTTKAPGDGVGLGLAISSGIVGDFGGRLTARNGTAGGAVFEVELP 579 >gi|150017793|ref|YP_001310047.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904258|gb|ABR35091.1| integral membrane sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 471 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 21/232 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58 +AK++ + L L S + H++ +P+ + +E + E ++ Sbjct: 238 LAKSLN---NQEMLRKRLTSDMAHELRTPLTTLKTHIEAFADGIWEPTSERFEVFYEEID 294 Query: 59 SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGE 107 + +R +D L I + + ++ Sbjct: 295 RMTKMVDDLRHLSKLEQTSIGLNKSRIDISKELEKIIYTFKPLYSKGNYELDTSITPNIV 354 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164 + + +I+ NL ++ L GKV + ++ + + NG + F Sbjct: 355 AMIDVDKFKQIITNLLSNSYKYLKPNGKVKVELKKENENVVIKVIDNGIGIPEKDIPYIF 414 Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ I L + + E + + Sbjct: 415 ERFYRSDLSRNKNTGGSGIGLTITKALVEAHGGNIYLESKINQGTKFTIHFP 466 >gi|323158860|gb|EFZ44871.1| sensor protein kdpD domain protein [Escherichia coli E128010] Length = 532 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53 A ++S ALL + + HD+ +P+ + E+L E I Sbjct: 287 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 345 Query: 54 RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 R ++ + + + + + + +S Sbjct: 346 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 405 Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162 + + ++L+NL A ++ I + NG + Sbjct: 406 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 465 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES + + + + + + L Sbjct: 466 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 518 >gi|308189064|ref|YP_003933195.1| aerobic respiration control sensor protein [Pantoea vagans C9-1] gi|308059574|gb|ADO11746.1| aerobic respiration control sensor protein [Pantoea vagans C9-1] Length = 783 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E ++ ++ +SAI Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + Q+ +IL NL Sbjct: 348 KVQLDNQPLDFTGFLADLENLSGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177 A +G V + F ++ +G R E+ Sbjct: 408 GNAVKFTQQGEIVVRVAYEQDETLRFEVQDSGMGIRQEEQDKIFAMYYQVKDQHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I LA + + ++ Sbjct: 468 GTGIGLAVSRRLAQAMGGDIHVHSAPGQGSCFTVEIK 504 >gi|254000195|ref|YP_003052258.1| signal transduction histidine kinase NtrB [Methylovorus sp. SIP3-4] gi|313202160|ref|YP_004040818.1| signal transduction histidine kinase NtrB [Methylovorus sp. MP688] gi|253986874|gb|ACT51731.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylovorus sp. SIP3-4] gi|312441476|gb|ADQ85582.1| signal transduction histidine kinase, nitrogen specific, NtrB [Methylovorus sp. MP688] Length = 360 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 21/231 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + LL + H+I +P+G + + +LL+ + + + ++ A Sbjct: 120 AREERMLIQQQANAELL-RNLAHEIRNPLGGLRGAAQLLEHELPQVNLREYTQVIIKEAD 178 Query: 62 IRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 M + L + ++ V+ + +L +R Sbjct: 179 RLQSLMDRLLVPHRVPKYEPTNIHEVLERVRSLLLAESPKAIMVKRDYDTSLPELIGDRE 238 Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQ----------DSKNENIFSLKINGNLARFPEK 163 + +LN+ A ++ G++T+ + + + NG P+ Sbjct: 239 KLIQAVLNIARNAAQAMQGTGQITLRTRAERQVTLAKKRYRVAIRLQIIDNGPGI-PPDI 297 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I V + ++ + E + LL Sbjct: 298 RDRIFYPLVSGREGGSGLGLTLAQTFITQHHGMIECESEPGK-TCFTILLP 347 >gi|268317252|ref|YP_003290971.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334786|gb|ACY48583.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 505 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 70/234 (29%), Gaps = 26/234 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRL 55 +N L ++ + I HD + + L+LL + + Sbjct: 139 QNQRHRLETL---GRMALGIAHDFNNLLMTFLGHLDLLRRSLSPETISEEVTHHLMALEQ 195 Query: 56 SSMSAIIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQ--------- 101 ++ ++ ++ +D L + + + + R Q Sbjct: 196 AARDGAALMRKLQEYVRQEKPTALEAIDLPALLEECLMLTRPYWYNEPRRQGIDIRVETQ 255 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARF 160 + ++ E ++ NL + A ++P+GG + I + D + I + G Sbjct: 256 LEPVPPVRGIASELRQVFTNLILNAVQAMPQGGTLRIATDFDKERGVIVRVSDTGIGMPE 315 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + V + E++ + E + Sbjct: 316 S-VRRRIFEPLFTTKPEGSGMGLAIVAGIVREHEGSIEVESALGEGTTFTLYFP 368 >gi|226309995|ref|YP_002769889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226092943|dbj|BAH41385.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 474 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 18/223 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS----A 60 + L S + H++ +P+ +I E L +E +++I + Sbjct: 247 KNEKLKNDFISSVSHELRTPLTSIKGWGETLISGGLEEPEETMLGLEVISKETDRLIGLV 306 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEK-----IDLS 112 L F + G + + + A K++++ + Sbjct: 307 EELLDFSKFQSGEMKLSRVPMDVRELLQDLHLQFSVRAHAKQIELKLETPPTPLIVMGDP 366 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ +NL A P+ G + I+ S + + ++ G + Sbjct: 367 NRLKQVFVNLLDNALKFTPQNGSIVIAASLSADRLLVTVTDTGEGINPEDLPHVTEKFFK 426 Query: 173 ES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R + L Sbjct: 427 GRSKLSGSGLGLAICKEIIQLHAGRFSVSSALGQGTSIMVDLP 469 >gi|254504034|ref|ZP_05116185.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11] gi|222440105|gb|EEE46784.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11] Length = 866 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 32/237 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S + A+ L + HD + + AI +LL + + I+ ++ A Sbjct: 484 QSQKMQAIGQLAGGVAHDFNNVLTAIIGFSDLLLASHRPTDPSFQDIMNIKQNANRAAGL 543 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116 ++ + + L D+ + + +V Sbjct: 544 VRQLLAFSRRQTLRPQQLELNDVLADLSILLDRLLGEKVDLKVIHGRDLWPVMADLNQLE 603 Query: 117 KILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKINGNLARF 160 ++++NL + A ++P + ++ G+ Sbjct: 604 QVIVNLAVNAGDAMPDGGRLTISTRNVSESESTQFENTRGMPPGEYMLVEVEDTGHGI-P 662 Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P+ +I D + + V + + + D L + Sbjct: 663 PDVMEKIFDPFFSTKEVGKGTGLGLSTVYGIVKQTGGFIFCTSEIDEGTTFRLFLPR 719 >gi|193214503|ref|YP_001995702.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087980|gb|ACF13255.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1123 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQLIRL 55 + ++ + +L I HD+ + + I S++ L + V Q + Sbjct: 740 EKQLLRTQRLENIGMLAGGIAHDLNNILSPILLSIQYLKMKVQDPHLSDVLDSVRQSAQR 799 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + L F + G + + ++E +I D V ++ +S + Sbjct: 800 GADMVKQILSFSKGREGKRIPIKMHHLVNELESLIYDTFPKGVTVDLNVPKSLSCISGDP 859 Query: 116 ---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157 ++LLNL + A ++ + S+ G Sbjct: 860 TELQQVLLNLCVNARDAMQEAGVLSIKAEEAFFDASTPNMPPELKTGVYIHLSVSDTGTG 919 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + V + ++ L DH Sbjct: 920 I-PEHLIDKIFDPFFTTKEAGKGTGLGLFTVHGIVKKHNGFLSVHSKLDHGTTFHLYFP 977 >gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 934 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 66/243 (27%), Gaps = 34/243 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA- 60 AK I + +L + + H++ +P+ AI +++ + Q + Sbjct: 455 AKEIAEAANQAK--SLFLANMSHELRTPLNAILGFAQIMHRSQTLSQEHQENVNVINRSG 512 Query: 61 -------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKID 110 L ++ G ++ I L + + D K++Q+ + Sbjct: 513 EYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESKQLQLDIERDNNV 572 Query: 111 LSRER------AKILLNLFMVAHA---------SLPRGGKVTISVQDSKNENIFSLKING 155 ++L+NL A + ++ F ++ G Sbjct: 573 PRYLYTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMTEVILEFQVRDTG 632 Query: 156 NLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 E ++ + ++ + + + + + + Sbjct: 633 PGIAENE-MDKLFEAFTQTATGIASQEGTGLGLPISRKFVQLMGGDISVQSKVGEGTTFT 691 Query: 211 ALL 213 + Sbjct: 692 FSI 694 >gi|220928586|ref|YP_002505495.1| histidine kinase [Clostridium cellulolyticum H10] gi|219998914|gb|ACL75515.1| histidine kinase [Clostridium cellulolyticum H10] Length = 310 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 70/227 (30%), Gaps = 23/227 (10%) Query: 10 SSMDLV-ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKF 66 ++++ L + I HDI +P+ ++ +E+L + E + + + A K Sbjct: 79 QTLEIAHKQLIANISHDIRTPLTSLLGFVEVLQKGDGISNTEQKEYLDIIQTKAQNLYKM 138 Query: 67 MRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 ++ F + + I +DF+ ++ + + + Sbjct: 139 IQDFFELSKLESEDTPIRLVKTDLTDLAEEVIAAFYQDFVMNGITPEIQLPQHPVYVWGD 198 Query: 115 R---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168 R +IL NL A G ISV++ + + GN + F ++ Sbjct: 199 RISLQRILNNLISNALKYGKDGRVTGISVREEVEKVWLDVWDRGNGIPGQDLPLVFNRLY 258 Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L + + V S L Sbjct: 259 TSEISRNSSMRGTGLGLAITKQLVEKQNGEIEVSSNPGEKTVFSFSL 305 >gi|148653889|ref|YP_001280982.1| histidine kinase [Psychrobacter sp. PRwf-1] gi|148572973|gb|ABQ95032.1| histidine kinase [Psychrobacter sp. PRwf-1] Length = 555 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + H++ +P+ I +E + ++ + + L + + + + + Sbjct: 303 FVGNVSHELRTPLTVIMGYIETFSDQPDLDPKWRRGFSLMTQQTVRMNQIINDLLLLSRL 362 Query: 77 VDSLIGLGDIEQV-------------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + + + + + + LLNL Sbjct: 363 ENEESIQSERVDMPKLLTRIFDDAQAYNKDYNHLIDLHLDSQQDIYGAEGYLHSALLNLV 422 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P+GG+V I+ Q+ K +F++ NG E ++ + + Sbjct: 423 TNAIKYTPKGGEVRITWQEVKEGCLFTVSDNGIGI-ADEHLDRLTERFYRVDGGRSRSTG 481 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + ++++ +L E ++ L + Sbjct: 482 GTGLGLAIVKHVLYQHEAKLTIESVEGKGSKFHVLFPR 519 >gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv. albensis VL426] gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis] gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv. albensis VL426] Length = 857 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 ++ + + A +++ H++ +P+ + +LL + DE + + + Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108 S L + ++ + E +++ + R+ EK Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGLELVVNSNI 583 Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159 +IL NL A +G + + + + G R Sbjct: 584 TTATIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643 Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + I + + + V L +L L Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702 Query: 214 E 214 Sbjct: 703 P 703 >gi|150391047|ref|YP_001321096.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950909|gb|ABR49437.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 461 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 63/235 (26%), Gaps = 23/235 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45 +NI + + + L I HD+ +P+ I + L+ ++ Sbjct: 223 RENIRIAMEREKMHSNLLRAISHDLRTPLTGIVGASGVILENLNQLEKSSIESLVSDINE 282 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E + + + ++ + + VD ++ Sbjct: 283 EAIWLNSLVENILNMTRIYEGKLVIEKKYEVVDDVVSEAINHANSFAKTRSIFVSMPDEI 342 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + ++L+NL A + ++V + +F + NG+ Sbjct: 343 VTVLIDGKLIVQVLINLLDNAIKHTEDHCSIFVNVYIEDDMAVFEVADNGDGIDES-IHN 401 Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D V + + + + + + S L Sbjct: 402 SLFDSFVTISSKIIDNKRGMGLGLSICKAIVEAHGGTITGGKSTEGGALFSFRLP 456 >gi|114567195|ref|YP_754349.1| sensor histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338130|gb|ABI68978.1| sensor histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 465 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 70/236 (29%), Gaps = 22/236 (9%) Query: 1 MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + ++ + L + I H++ +P+ + LE + ++ E + L++ Sbjct: 228 LGRDFNLMAQKLDDVEKNRRRLTADISHELRTPLTFLRGQLEGMQTGSIPLDVENIALLQ 287 Query: 55 LSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + +K + L + V + Sbjct: 288 DEVIRLSHLVKELDNLSLVENRAVSLNLSRFPLSELLEHLTPVSLAMQDKGISYSIDIDS 347 Query: 107 EKIDLSRERAKILLNLF---MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160 ++ +R ++L L A + +GG+VT+S++ +N F++ NG Sbjct: 348 AITEIYADRDRLLQILLNLLSNAMQHVEQGGQVTLSIKQHRNHLQFAVADNGRGIPPENL 407 Query: 161 PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P F + + + + ++ E V L Sbjct: 408 PHVFERFYRVDDSRNRREGGMGLGLAIARGYVEAQQGKIWVESSTGCGTVFYFTLP 463 >gi|298242402|ref|ZP_06966209.1| histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555456|gb|EFH89320.1| histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 400 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 70/238 (29%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEV----- 49 + + + L L L + + H++ +P+ I + +L++ + E Sbjct: 154 LRAKQEQLVQAGKLATLGELTTGVAHELNNPLNNIGLFVGNAIDLIELGMADTEPGRILQ 213 Query: 50 -----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRV 100 MQ +R ++ F R A +++ + ++ + + + K Sbjct: 214 ELSNAMQQVRKATEIISHLRTFGRAASVSRETINVTQVIQRSISLMGEQLRLRLIEVKMQ 273 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLA 158 + + + ++ +NL A +L ++I S+ G Sbjct: 274 FPEEDIFVMGNAIQMEQVFINLLTNARDALTSAPTKIISIECIRRDEMIEISVADTGPGI 333 Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I D + + + E+ + + L Sbjct: 334 PI-ELEQRIFDPFFTTKEVGAGTGLGLSITYGIIKEHNGAITVQSRLGEGARFLIQLP 390 >gi|283784459|ref|YP_003364324.1| two-component sensor kinase [Citrobacter rodentium ICC168] gi|282947913|emb|CBG87475.1| two-component sensor kinase [Citrobacter rodentium ICC168] Length = 895 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 60/229 (26%), Gaps = 17/229 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + L L + + HD+ +P+ + E+L + + S + Sbjct: 652 EEQARLASERESLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSAHAKQASEIRQQ 711 Query: 62 IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 I + ++ + + + + V +S Sbjct: 712 ILNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALKMLEPGLLQPVNLSLPAPLTL 771 Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKF 164 + + ++L+NL A ++ I Q + N + NG F Sbjct: 772 IHVDGPLFERVLINLLENAIKYAGPQAEIGIDAQVTNNRLQLEVWDNGPGIPEGQQQFIF 831 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + GN ES + + + + L L Sbjct: 832 DKFARGNKESAVPGVGLGLAICRAIVEVHGGTLTVRNRPQGGACFRVTL 880 >gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] Length = 1055 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 63/238 (26%), Gaps = 27/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K + + + + + H+I +P+ + E+L + + + S+ Sbjct: 386 EKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTPLTATQRDYVDTIETSSQ 445 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105 + L + ++ ++ + + + I V + + Sbjct: 446 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVSISRNTP 505 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161 + +I++N A +G T +++ + FS+K +G Sbjct: 506 YHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKDSGIGIDEQ 565 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I + L + E L Sbjct: 566 Q-QKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFEL 622 >gi|298528974|ref|ZP_07016377.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510410|gb|EFI34313.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 714 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 56/238 (23%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + L + + + + H++ +PI +I + L+LL + + + + ++ SA Sbjct: 196 LRTAKEAALEASRAKSEFLANMSHELRTPISSIISGLKLLAPMEEDPQKLSILNTCKDSA 255 Query: 61 IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSW 104 + + D L + ++ Sbjct: 256 EALHSIINDSLDLAKIEAGKIELIPENFDLHHELAKNLNTFRPQAGTKGLDLRLQMDPGL 315 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARF 160 +IL NL A G + + F ++ G Sbjct: 316 PRLVRADMHRLGQILRNLLSNAVKFTREGWVELGAEVLIKNEKSCGVNFWVQDTGIGIPK 375 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 DG+ + L + + + + Sbjct: 376 DVLPRLFEAYAQADGSYSKKYGGTGLGLAITRYLVRLMGGSISVHSKEGEGSCFTLNI 433 >gi|254502633|ref|ZP_05114784.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222438704|gb|EEE45383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 597 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 21/233 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRL 55 + K + + L AL + + + H+ P+ A+ + E L E E ++ I Sbjct: 345 LRKTQTELVQAGKLAALGQMSAALSHEFNQPLAAVKSYAENALKLLERQRTSETLENISR 404 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSW 104 S + + + + Q++ D I + Sbjct: 405 ISEMTDRMASISKHLRNFARRPMEKVRPVALVQIVNDAIGILQPRLRGSGAKLNFSKPDE 464 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162 + ++++NL A ++ V I + Q + + S++ G E Sbjct: 465 EIWVMGGHIRLQQVVVNLLTNALDAMKEQQPVQIDIALQTDADTCVLSVRDYGAGVSEDE 524 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +Q+ D + + + + + L D+ + + L Sbjct: 525 -MSQVFDPFFTTKQPGEGMGLGLSISYNIVKDFGGALRVSNHDEGGAIFAIEL 576 >gi|307154620|ref|YP_003890004.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984848|gb|ADN16729.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 708 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 81/241 (33%), Gaps = 30/241 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 + ++++ L S I HD+ + + I +LL +++++I +++ Sbjct: 329 EAKRLQNQRLEIIGALSSGISHDLNNILTPILGMAQLLVRNLSHLDETTQQMLKIIEINA 388 Query: 58 MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 LK + + + + +I Q++++ ++ + ++ Sbjct: 389 QRGAGLLKQILMFSRGVKGRNSILLVSSLILEIRQMLQEIFPKTIIIEQDIMPDIWAING 448 Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKING 155 + ++L+NL + A ++P GGK+TI+ ++ + S+ G Sbjct: 449 DITQLHQMLMNLCLNARDAMPDGGKLTIAAKNFMIDQAYSNIEPEAKIGPYVVISVLDTG 508 Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E +I + + + V+ + + + L Sbjct: 509 MGI-PSEMKERIFEPFFTNKEIGKGTGLGLSIVMNIVKNHGGFIKVLSEVGKGSHFKIFL 567 Query: 214 E 214 Sbjct: 568 P 568 >gi|189912856|ref|YP_001964745.1| Sensor histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913181|ref|YP_001964410.1| Histidine kinase sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777532|gb|ABZ95832.1| Sensor histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781249|gb|ABZ99546.1| Histidine kinase sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 774 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 60/237 (25%), Gaps = 29/237 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRL 55 + L S + H++ SP+ I LE ++++I Sbjct: 539 ERKEQERLQHE-----FISNVSHELRSPMTNIRGYLEFFKSDSSLPFNKEHINMLEVIDK 593 Query: 56 SSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ ++ + V + + + + ++ + + Sbjct: 594 NAKRLSFLIENLLKLTTSREKDNEAEVIEIFDPVPVIEDVIHMNSHLAKGKPIEWDLTLK 653 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + E ++I+ NL++ A +G + + ++ G K Sbjct: 654 KGLLIRGIRFEFSQIITNLYVNALKYTFKGKIGISLREFNGK-VEIIVEDTGIGIDPNYK 712 Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I + V L + + E + K Sbjct: 713 NQIFDRFFRIPSTDNKKIGGTGLGLSIVKSLVEKMSGEIFVESSMGEGSKFTIYFPK 769 >gi|218780361|ref|YP_002431679.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761745|gb|ACL04211.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1357 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 66/248 (26%), Gaps = 35/248 (14%) Query: 1 MAKNIC------FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIE 46 M K M+ + L I HD + + I ELL E Sbjct: 965 MEKERESLIAQLQRAQKMESIGNLAGGIAHDFNNLLSPIVGMSELLLEDLPPDSLEYENA 1024 Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 E+ + +S L F R + V L ++ ++ I D ++ Sbjct: 1025 QEIFTAGKRASDLVNQILAFSRQSEHKKIPVLVQKILREVLKLSRSTIPADIQISQDIMP 1084 Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENI 148 + + + ++++N A+ ++ + G + Sbjct: 1085 DCGPVIADPTQIHQLVMNFITNAYHAVEKTGGEIFVQLKETKLSAEEIGSKPLGPGRYAV 1144 Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + NG +I + + + + E+K + E Sbjct: 1145 LVISDNGEGINPA-ILDKIFEPYFTTKELGKGTGLGLAVAYGIIKEHKGDISVESELGSG 1203 Query: 207 VVLSALLE 214 + L Sbjct: 1204 TAFTIHLP 1211 >gi|197119218|ref|YP_002139645.1| PAS/PAS domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088578|gb|ACH39849.1| sensor histidine kinase, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 545 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 65/230 (28%), Gaps = 19/230 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 A+ L++ +L A + HD+ P+ AI+ ++L E G++ + + +R Sbjct: 316 ARACEMELANEELEAF-SYTVSHDLRRPLTAINGFSQVLLELYGPGMDPQCREYVREILN 374 Query: 59 ---SAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEK 108 + + + + ++ + + V Sbjct: 375 GSIRMNHLIDTLINFSRRSVGESVREEVEITGLVEELYAELKRAEPQRNVSLLVQPGVRG 434 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARF---PEK 163 + + +L NL A + I+ ++ + ++ NG Sbjct: 435 VADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGTIDHQGKTAYFVRDNGAGFDMALGDLL 494 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + + I V + + ++ E L Sbjct: 495 FKPFQRLHDARDFEGTGIGLASVQRIIQRHGGQIWAESEPGKGATFYFTL 544 >gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1027 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 66/238 (27%), Gaps = 24/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56 + + ++ + + + H++ +P+ AI +L+ + ++++ S Sbjct: 551 LKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLMQRDVSLKADHQQYIKIVNKS 610 Query: 57 SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + L L + ++ + R ++ Sbjct: 611 GEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCSLETLLKLKAQAKNLSLRFEIDSQ 670 Query: 106 GEKIDLSRER--AKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARF 160 + E ++L+NL A +G +V + N IF+++ G Sbjct: 671 VPPFIKNDENKLRQVLINLLGNAIKFTNKGNVTLRVINQELEQLNTLIFAVEDTGPGIPP 730 Query: 161 PEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + + + ++ E S L Sbjct: 731 EEVQDLFKAFKQTKTGRESQEGTGLGLRISQNFVQMMGGKITIESEVGKGSCFSFALP 788 >gi|86156964|ref|YP_463749.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773475|gb|ABC80312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 247 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 66/205 (32%), Gaps = 10/205 (4%) Query: 20 SRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAII-RLKFMRLAFGYTG 75 + + H++ +P+ A+ ++L E ++ + + ++ A G Sbjct: 39 ATLAHELKNPLTAVKALVQLGLGNPREAASHERLEHVARAVERMERILRDYLASARGMAE 98 Query: 76 SVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 + + +G + + R+ R + L+NL + Sbjct: 99 LAPARVEVGPLVSGVLQGLSARASEARVRLVTHGDATVEADPRRLEEALVNLVANGIEAT 158 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 P GG+V + V S ++ G P+ ++ + + + +V + Sbjct: 159 PPGGEVEVEVLSSAEGAELVVRDTGTGI-APDALQRLGTPFFSTRSGGNGLGVAHVRSVI 217 Query: 191 HENKIRLLPEIIDDHNVVLSALLEK 215 + L E V+ A L + Sbjct: 218 AMHGGSLQYESEPGKGTVVRATLPR 242 >gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25] Length = 1059 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 63/238 (26%), Gaps = 27/238 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 K + + + + + H+I +P+ + E+L + + + S+ Sbjct: 390 EKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTPLTATQRDYVDTIETSSQ 449 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105 + L + ++ ++ + + + I V + + Sbjct: 450 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVSISRNTP 509 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161 + +I++N A +G T +++ + FS+K +G Sbjct: 510 YHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKDSGIGIDEQ 569 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +I + L + E L Sbjct: 570 Q-QKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFEL 626 >gi|167898529|ref|ZP_02485930.1| sensory box histidine kinase [Burkholderia pseudomallei 7894] Length = 709 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695 >gi|30260729|ref|NP_843106.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47777831|ref|YP_017195.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183567|ref|YP_026819.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|65317996|ref|ZP_00390955.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|170708223|ref|ZP_02898669.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|229602071|ref|YP_002865174.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|30254097|gb|AAP24592.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47551536|gb|AAT29670.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177494|gb|AAT52870.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|170126879|gb|EDS95760.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|229266479|gb|ACQ48116.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 416 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 65/219 (29%), Gaps = 20/219 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67 S H++ +P+ I + ++L + + + I + + Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253 Query: 68 -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + L + + + I + + ++V + + ++++ Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEYDISFMGDRERIHQMMV 313 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176 L A GG + I + + +K +G + + F + G+ + Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 373 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ ++ E +L K Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 412 >gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 478 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGY- 73 + + HD+ +P+ AI + + + + +I + + + + Sbjct: 246 ANVSHDLKTPLTAIQGFAQAILDGTAQSPETLRNAATVIYNEASRMYRLVLDLLTLARFD 305 Query: 74 -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123 VD L + + + L + + L NL Sbjct: 306 AGTADLVFEKVDPQDLLRETVRRFSPLAQKAGVILRLEDASLPVLFADGERLMQALANLM 365 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS-- 178 A P GG + + + + + ++ G E F + GN + D Sbjct: 366 DNALKYTPAGGTIVLRGKVEEGHLLLEVQDTGKGISPEEQTRIFERFYRGNPSRSQDGEQ 425 Query: 179 -HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + +L Sbjct: 426 SSGLGLPIVREILRAHGGEVRLYSEVGKGSCFTLVLP 462 >gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 942 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 51/233 (21%), Gaps = 23/233 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 AK + + + + H++ +P+ I ++L + ++ + + + S Sbjct: 469 AKERADAANQAK--SEFLAHMSHELRTPLNGILGYAQILKRDTTLDQHQLDGLTVIQRSG 526 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLG----------------DIEQVIEDFIAVDKRVQVSW 104 L + + L + E + + Sbjct: 527 EHLLTLIDDILDIAKIEAGRMELNLSDVPLEQFVSFIAETIRVKATEKGLDFVCEMPPDL 586 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + LLNL A +G F ++ G Sbjct: 587 PACVRVDEIRLRQALLNLLSNAIRFTEKGSVRLRVAFLPPARLCFEVRDTGIGIDQGRLE 646 Query: 165 TQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L + E D S L Sbjct: 647 EIFSPFEQVSDDRHRFGGTGLGLAISRQLVRLMGGEIHVESRRDIGSAFSLEL 699 >gi|227551075|ref|ZP_03981124.1| histidine kinase [Enterococcus faecium TX1330] gi|293378617|ref|ZP_06624777.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Enterococcus faecium PC4.1] gi|227179773|gb|EEI60745.1| histidine kinase [Enterococcus faecium TX1330] gi|292642748|gb|EFF60898.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Enterococcus faecium PC4.1] Length = 347 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 78/236 (33%), Gaps = 21/236 (8%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 + K+ + ++ L S + H+ +P+ I ++LL + DE Q+ Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQSPNLSDEERQIFLYR 170 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115 + +I +L + +++ + ++ D + V + EK L + Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230 Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159 ++ LN+ A G++ I + ++ E + + +G Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGQIHIKLFETATEIVLEVTDSGVGMNEET 290 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + G+ I + + V + + R+ I+ L K Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 346 >gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1] Length = 671 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 28/238 (11%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57 KN S + + + I H++ +P+ A+ ELL + L + Sbjct: 274 KNARIEAESANKAKSEFLANISHELRTPLHAVIGMTELLIETTLDKDQRYYSDTLYSSAQ 333 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVSWT 105 M ++ + + G +D + ++ Q+++D IA+ K + + Sbjct: 334 MLLMLINDILDFSRIEAGRIDEDKEVFNLRQLLQDIIAIMKEKASCKGLVLASDIDENIP 393 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFP 161 ++LLNL A RG S++ G Sbjct: 394 SVISGYPGYIKQVLLNLIQNAIKFTYRGQVTVTVTVVSETPQDVSLKVSVQDTGIGI-PE 452 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+ I + + V L + + S L Sbjct: 453 EQQHLIFNPFTQIDASSTRKEGGTGLGLAIVRKLIAFMGGEIQVTSSERDGSTFSFTL 510 >gi|218896332|ref|YP_002444743.1| sensor histidine kinase [Bacillus cereus G9842] gi|218542783|gb|ACK95177.1| sensor histidine kinase [Bacillus cereus G9842] Length = 466 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69 + + H++ +P+ I E + + +++V QLI + + + Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303 Query: 70 -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + + D ++ + ++ + ++L N+ Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179 A + G + I+++ + +K G + + Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + H + + E D + L Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457 >gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1134 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 65/245 (26%), Gaps = 31/245 (12%) Query: 1 MAKN---ICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 M K + + ++L + + + H++ +P+ ++ +LL + + I Sbjct: 418 MQKTQVALETKANELELASRYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLTDKQI 477 Query: 54 RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + + L+ G V+ + ++E + + Sbjct: 478 EYAKTIHSAGADLLTLINDILDLSKVEAGQVEIHANDISLTNLLETIEQKFRPIAEQQEL 537 Query: 107 EK------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + +IL NL A +G I + + FS+ Sbjct: 538 NFQITIAEESLTTLYTDGQRLKQILNNLLSNAFKFTQQGNIKLIVQKSEADFISFSVSDT 597 Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G ++ DG+ + + A + + Sbjct: 598 GIGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGLSISRQFARLLGGEITLHSEEGKGSTF 657 Query: 210 SALLE 214 + L Sbjct: 658 TFSLP 662 >gi|149916863|ref|ZP_01905364.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149822141|gb|EDM81532.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 719 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 77/243 (31%), Gaps = 31/243 (12%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52 + + L M+ V LL S + HD + + I + +LL + + + V++ Sbjct: 337 QRQLEVQLRHSQKMESVGLLASGVAHDFNNILMGIMGAADLLTATSEGNTRELAETVVEG 396 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ L F R +VD + D +++E + +Q + Sbjct: 397 AETAASLIQRLLDFSRKGQRVERAVDVHAVIRDTARLLERAVERRVEIQCRLEASSHTVR 456 Query: 113 RERAKILLNLFM---VAHASLPRGGKVTIS----------------VQDSKNENIFSLKI 153 + ++ L + ++P GG + + + S++ Sbjct: 457 GDAHQLQSALLNLGVNSRDAMPEGGTLRFQTRTVVVGEAGLATRTGMLAAGAYLEISVED 516 Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G + T+I + + + + V +++ + E + Sbjct: 517 TGEGM-DGDTATKIFEPFFTTKAEGKGTGLGLAAVHGAISDHRGGIEVESQPGVGTRFAL 575 Query: 212 LLE 214 LL Sbjct: 576 LLP 578 >gi|119493836|ref|ZP_01624403.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119452428|gb|EAW33617.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 635 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 60/248 (24%), Gaps = 38/248 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53 + K NL L + S I H+ +P+ I S E L+ E + ++ Sbjct: 377 LQKEKELNL----LKSRFVSMISHEFRTPLTTIMASTEALEYYGHRWTEDKKDKYFSRIR 432 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSL------------------------IGLGDIEQV 89 + + + + L Sbjct: 433 VTIQHLTDLLNDVLIIGQSEAHKLPYNPTVIDLDSFCENLVEEIQITANKKCNLTLSIHG 492 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 ++ I R I +NL A P+GGK+ + + + + Sbjct: 493 KNILNYLELAASQDSKILPISDERLLRHIFINLLSNAVKYSPKGGKIEMKLFYQATQVVV 552 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHN 206 ++K G ++ + + + V + Sbjct: 553 TIKDEGIGIPVEDQKHLFESFHRARNVGTISGTGLGLAIVKRSVDRLGGTITVHSEVGKG 612 Query: 207 VVLSALLE 214 + + L Sbjct: 613 TIFTVALP 620 >gi|78187032|ref|YP_375075.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166934|gb|ABB24032.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 817 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 15/228 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52 M + + + ++LV L I HD + + +E+L + E + Sbjct: 443 MQEQLNQS-QKLELVGQLAGGIAHDYNNMLAITLGHVEMLLDQVPESHPFFNGLKAILNS 501 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 S L F R V + + ++ + +S Sbjct: 502 TERSVAITSQLLAFARKQTVQPAVVRLNALVEECLPMLRGAMGESIACVWHPGPAINSIS 561 Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQI 167 + +ILL L + A ++ G +TI+ + + ++ G Sbjct: 562 IDPGQFDQILLILCLNARDAIKENGTITINAGESTTPGYAVLTVSDTGIGINERHLPHIF 621 Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ + + Sbjct: 622 EPFFTTKEVGKGTGLGLSTVYGIVKQHNGHVACSSEQGKGTTFTLSFP 669 >gi|16330789|ref|NP_441517.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653282|dbj|BAA18197.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 750 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 71/245 (28%), Gaps = 32/245 (13%) Query: 2 AKNICFNLSSMDLVALLCS----RICHDIISPIGAIHNSLELLDEVGI----------ED 47 K + L + LL S I H++ +P+ +I L + Sbjct: 362 TKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQY 421 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQ 101 ++ + ++L+ +G + + + I + +++ Sbjct: 422 YLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQIN 481 Query: 102 VSWTGEKIDLSRERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + + + +IL L A P G V + + N+ IF ++ Sbjct: 482 LELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDT 541 Query: 155 GNLARFPEKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G + ++ + S ++ + L + + E + Sbjct: 542 GIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIF 601 Query: 210 SALLE 214 + ++ Sbjct: 602 TTVIP 606 >gi|284007852|emb|CBA73750.1| two-component system, OmpR family, sensor histidine kinase KdpD [Arsenophonus nasoniae] Length = 899 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56 A++ + L L + + HD+ +P+ I E+L E E + IR Sbjct: 656 AESAKLDAEREQLRNSLLAALSHDLRTPLTVIFGQTEILMLELSAEHSPHTEKVNQIRQQ 715 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGE 107 +S + + + Q + + ++ V Sbjct: 716 ILSTSRLVNNLLDMARIQSGGIVPTLAWESLQEIIGSALRSLEYALKSHPTKINVPAELL 775 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164 + ++++NL A + I + G + F Sbjct: 776 LYCDANLLERVIINLLENAIKYSAENSPIGIDAYPQGKYIHIEIWDKGIGIPEGQEKLIF 835 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ES+I + + + + E + +L Sbjct: 836 DKFSRAKKESSIPGVGLGLAICQAIIKLHNGEIWAENNKNSGATFHFVLP 885 >gi|254562963|ref|YP_003070058.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270241|emb|CAX26235.1| putative hybrid histidine kinase: Domains: GAF, Histidine Kinase, ATPase and CheY-like [Methylobacterium extorquens DM4] Length = 691 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53 A+++ ++++ L + HD + + I +S +LL + ++ Sbjct: 306 AQDVLRQSQKLEVIGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAEDRRTRYIEAISNTV 365 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 ++ L F R + + + +++ V ++ Sbjct: 366 DRAAKLTGQLLAFARRQTLKPKVFAACDSVRSLSEMLGTLTGSRITVVTELPANACFVNA 425 Query: 114 ERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNL 157 + ++ L+N+ + A ++ + V S+ G+ Sbjct: 426 DPSQFDTALVNMAVNARDAMEGEGQLTIRVEPVEQMPSVRAHPAVQGPFVAVSISDTGSG 485 Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +I + + + V A ++ ++ E + L + Sbjct: 486 I-AKDVVERIFEPFFTTKAVGQGTGLGLSQVFGFAKQSHGEVVVESEVGRGTTFTLYLPR 544 >gi|253578664|ref|ZP_04855935.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849607|gb|EES77566.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 955 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 28/222 (12%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + HDI +PI I L +L++ G + E + + L + ++S Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKINESSKLLLSLVNDVLDMAKLESD 643 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123 + E + D + + +S+ + KIL+NLF Sbjct: 644 TVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKILMNLF 703 Query: 124 MVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQIVDGN------V 172 + G + +S++ + F +K NG ++ Sbjct: 704 TNSMKYNKVNGFIYMSMRTIERSEDHMTCEFKIKDNGIGMSEEFIKNELFTPFVQADNSP 763 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + V L + + E + +L Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805 >gi|149919272|ref|ZP_01907755.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase [Plesiocystis pacifica SIR-1] gi|149819986|gb|EDM79408.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase [Plesiocystis pacifica SIR-1] Length = 1898 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 26/230 (11%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 L +L L S + H+I +P+ I N EL+ ++ GI E + I + Sbjct: 1668 QQQRLESLGTLASGVAHEINNPVQGILNYSELIHVNVEDAGIVREFTEEITAEANRVAAI 1727 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTGEKIDLSRE 114 ++ + D + + V + ++ Sbjct: 1728 VRNLLSFSRQDTDQQFEPATVDAIYSATLMLIKSVLRRDQVTIELVLPHDLPQVRCRIQQ 1787 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLARFPEKFTQ 166 +I++NL A +L + + + ++ +G E Sbjct: 1788 IQQIVMNLVTNARDALNEVYPGYDERKRIELKAERLGEDRVRMIVEDSGPGI-PAEVLPH 1846 Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I D + + +A ++ L + L Sbjct: 1847 IFDPFFTTKGRDQGTGLGLSVSHGIAKDHGGELSVDTAPGAGTRFYLDLP 1896 >gi|145593183|ref|YP_001157480.1| integral membrane sensor signal transduction histidine kinase [Salinispora tropica CNB-440] gi|145302520|gb|ABP53102.1| integral membrane sensor signal transduction histidine kinase [Salinispora tropica CNB-440] Length = 369 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 18/215 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIR-----------L 64 L + + H++ +P+ I LE ++ ++++ ++R + Sbjct: 148 LLADLGHELRTPLATIEAYLEAAEDGVAVDDEDLQSVLRAQTDRLHRLADDIAAVSRAET 207 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 + L T D + V R + + + + ++L NL Sbjct: 208 HQLDLHPVRTAPGDLVRDAVAAAWPRYAGKGVTLRSDLRPSPQVDVDPQRMGQVLGNLLD 267 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SH 179 A P GG VT+ V ++ G P F + + Sbjct: 268 NALRHTPEGGTVTVHVIGGARSVELAVADTGPGIPAQHLPHIFERFYRVDTARDRGNGGS 327 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V + + R+ E + ++ +L Sbjct: 328 GIGLAIVRAVVSAHGGRVRAENVPGGGAMVKVVLP 362 >gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1159 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 67/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54 + +L L L + H++ +PI I E + D + + + LI Sbjct: 473 LTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQDLTEGQQKQLGLII 532 Query: 55 LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 S+ + + + V S + + + + + V + Sbjct: 533 KSADGLARLVDDLLDYHQMRYGQLEIHPQPVSSKGVIRLVLDLCQHLVQAKPLTLVDISP 592 Query: 107 EKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159 ++ + ++L NL A P+ GKV +S N + G Sbjct: 593 VELPPVLADEQRLEQVLYNLVGNAIKYTPQ-GKVVLSALVEGNFLRIKVTDTGIGIAPDH 651 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F +V + E + + L H L E + L Sbjct: 652 LEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLP 706 >gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1223 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%) Query: 3 KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 + + +L + + + H+I +P+ I +L + + +++ + Sbjct: 621 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 680 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102 A L + + + + + +I + I V Sbjct: 681 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 740 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155 + S +I+LNL A F++ G Sbjct: 741 KVPDYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTG 800 Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 R Q DG+ + L R+ E V Sbjct: 801 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 860 Query: 211 AL 212 Sbjct: 861 FT 862 >gi|83717440|ref|YP_439204.1| sensory box histidine kinase [Burkholderia thailandensis E264] gi|83651265|gb|ABC35329.1| sensory box histidine kinase [Burkholderia thailandensis E264] Length = 812 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 578 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 634 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 635 ATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQITHDRLPIVH 694 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ K I+ + +F ++ NG P+ F +I Sbjct: 695 GIAAQLVLLFQNLIGNAIKFRSKERIARIHLEADTRDDAWVFRVRDNGIGI-DPQYFERI 753 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 754 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIAVESEPGRGTTFSFALSR 805 >gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 661 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 58/242 (23%), Gaps = 30/242 (12%) Query: 2 AKNICFNLSSMDLVALLCSRI--------CHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K F L A R+ H++ +P+ AI E++++ + E ++ + Sbjct: 254 RKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIMEDHAVTSESLEAV 313 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------- 104 + L+ + ++ + + + +F+ Sbjct: 314 DTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKSTFESFRELADDKGLRFV 373 Query: 105 -------TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 I +IL L A G N +++ G Sbjct: 374 VDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDAGEIGVAVRVADGN-LELNVRDTGCG 432 Query: 158 ARFPEK-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + D + D + L+ + + Sbjct: 433 IPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLGGDISVRSQAGAGSQFTVR 492 Query: 213 LE 214 L Sbjct: 493 LP 494 >gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A] gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 1319 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 61/242 (25%), Gaps = 29/242 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + N + L + + + H+I +PI + ELL +V ++ E +L SA Sbjct: 714 LLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVELDAEQRELTENIFRSA 773 Query: 61 IIRLKFMRLAFGYTG------------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102 L + ++ + L + + + Sbjct: 774 NALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVGKMLSFTAERKSLAFNYEICSDI 833 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158 + +I+ NL + G + + + F ++ G Sbjct: 834 GIDLVVMGDPGRVRQIITNLATNSIKFTHEGHVKLHVSVEQETDDTIEVKFVIQDTGIGI 893 Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E ++ + L K R+ D + Sbjct: 894 -EEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELMKGRMALASKKDEGTTATFW 952 Query: 213 LE 214 + Sbjct: 953 IP 954 >gi|332764275|gb|EGJ94511.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-671] Length = 321 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71 + + H++ +P+ + LE++DE +E + + + L ++ Sbjct: 99 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 158 Query: 72 GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 T ++ + + + +V+E ++ + + + NL Sbjct: 159 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 218 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179 A P G +T+ Q + FS++ NG PE ++ + Sbjct: 219 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 277 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + ++ RL E S ++ Sbjct: 278 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 312 >gi|292489907|ref|YP_003532797.1| protein histidine kinase/phosphatase sensor for OmpR [Erwinia amylovora CFBP1430] gi|292900944|ref|YP_003540313.1| osmolarity sensor two-component sensor kinase [Erwinia amylovora ATCC 49946] gi|291200792|emb|CBJ47926.1| osmolarity sensor two-component sensor kinase [Erwinia amylovora ATCC 49946] gi|291555344|emb|CBA23705.1| protein histidine kinase/phosphatase sensor for OmpR [Erwinia amylovora CFBP1430] gi|312174091|emb|CBX82344.1| protein histidine kinase/phosphatase sensor for OmpR [Erwinia amylovora ATCC BAA-2158] Length = 449 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 59/205 (28%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMAEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + + + N+ + A Sbjct: 295 QFERADLNGVLGEVVAAESGYEREIENAVLPGELLLDINPLAIKRAIANMVVNAARYGNG 354 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVILL 189 KV+ + F ++ +G F V G+ + + V + Sbjct: 355 WIKVSSGSELQ--RVWFQVEDDGPGIEPDQLQHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + A L Sbjct: 413 IDAHYGTLEIGKSEKGGLRIRAYLP 437 >gi|271499735|ref|YP_003332760.1| Osmosensitive K channel His kinase sensor [Dickeya dadantii Ech586] gi|270343290|gb|ACZ76055.1| Osmosensitive K channel His kinase sensor [Dickeya dadantii Ech586] Length = 909 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56 +N + L L + + HD+ +P+ + E+L E IR Sbjct: 660 TENARLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLNLASEGSPYAPQASQIRQH 719 Query: 57 SMSAIIRLKFMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKI 109 +S + + + + +E++ + + + + I Sbjct: 720 ILSTTRLVNNLLDMARIQSDGFNLRKEWQTLEELTGSALRQLENSLASNTIHLRLPQDMI 779 Query: 110 DLSRE---RAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + ++L+NL A IS S + ++ NG Sbjct: 780 LVYCDASLIERVLINLLENAIKYAGEQATITLSASRISSSASGDVLEVQIQDNGPGIPIG 839 Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + F + G+ ES+I + + + ++ D+ V L Sbjct: 840 QEKIIFDKFARGHKESSIPGVGLGLAICRAIVEIHGGKIWATNADEGGAVFHFTLP 895 >gi|229198128|ref|ZP_04324837.1| hypothetical protein bcere0001_36580 [Bacillus cereus m1293] gi|228585288|gb|EEK43397.1| hypothetical protein bcere0001_36580 [Bacillus cereus m1293] Length = 424 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51 M K+ N+ S L + + H++ +P+ + ++LL+ + Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 + + + LI + + V +V++S + I Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315 Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + + ++N+ ++ G + ++ + +K +G E+ ++ Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIVIRVKDSGVGM-TKEQLARLGQP 374 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + +L Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418 >gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 597 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 60/236 (25%), Gaps = 26/236 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51 M + L + + H++ +PI + E + ++ + + Sbjct: 359 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 414 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVS 103 L R+ G+ + + ++ Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E ++L NL A GG V + ++ S + ++ +G+ + Sbjct: 475 RDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534 Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + + + + + +K + + S L Sbjct: 535 PFVFERFYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLP 590 >gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 1010 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 21/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57 A+NI + + S + H++ +P+ AI SL LL + + + + Sbjct: 767 AQNISERRAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIQIALL 826 Query: 58 --MSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106 + + + +G V+ + + ++ + + + + Sbjct: 827 ETERLVRLVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITLEILPTS 886 Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + L NL A P VT+S + +F ++ G + T Sbjct: 887 LQLWAERDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEQLET 946 Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + Sbjct: 947 IFSRFQQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYFTIP 1000 >gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 617 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 60/236 (25%), Gaps = 33/236 (13%) Query: 10 SSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 S + + + + H++ +P+ AI E+L E + + Sbjct: 107 QSQKIAEEANYAKSHFLANMSHELRTPLNAIIGYSEMLQEDAEDLNQESCVLDLKKIQGA 166 Query: 63 RLKFMRLAFGYTGSVD------------------SLIGLGDIEQVIEDFIAVDKRVQVSW 104 + L + I+ ++E V K V Sbjct: 167 GKHLLGLINTVLDLSKIEAGRMELYIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDN 226 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 G+ + ++LLNL + G++ + V+ F + NG E+ Sbjct: 227 LGQMHTDLTKLRQMLLNLLSNTAKFTEQ-GQIRMEVRRDGEWINFCIADNGIGM-TEEQQ 284 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + E + L Sbjct: 285 KKIFQPFTQADASTTRRYGGTGLGLAITKQFSEMMGGVIWVESEFGQGSIFMMSLP 340 >gi|159901418|ref|YP_001547665.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894457|gb|ABX07537.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 557 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR------ 63 ++ + + H++ +P+ AI +LL ++ IRL+ + Sbjct: 309 SMFVATMSHELRTPLNAILGYTQLLHLGAKARGQEDVLPQLERIRLAGKHLLTLVSNVLD 368 Query: 64 -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 M L G + + I Q + + + + T + +I Sbjct: 369 FSKIEHGKMNLDLGDVQLASLVDEVMGIVQPLAEARFDQLTTEFASTSLIYSDGGKIRQI 428 Query: 119 LLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN---- 171 L NL A +V + + IF++ G + ++ Sbjct: 429 LFNLLSNAIKFTEAGTVTLRVWDEQRAGEPWLIFAVSDTGIGMAPDQLR-RLFKPFVQAD 487 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + LA + E + + + Sbjct: 488 ESTTRTYGGTGLGLALSQQLAAMLGGSISVESCPNVGSTFTLQIP 532 >gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis 638R] Length = 1015 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 59/239 (24%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K + L+S L + + + H+I +P+ AI +L E+E + + Sbjct: 633 RKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYV 692 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105 + + L + +++ + + + Sbjct: 693 SII-ENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQL 751 Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 +++++NL A +G E F + G Sbjct: 752 EFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSQGSIRFGYEHR-GKELYFYVTDTGCG 810 Query: 158 ARFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +K I V S + L + + + L Sbjct: 811 I-PKDKQESIFGRFVKLNSFAQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 868 >gi|291563053|emb|CBL41869.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [butyrate-producing bacterium SS3/4] Length = 356 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 67/236 (28%), Gaps = 22/236 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGI 45 + + + + A L + HDI +P+ +I S LELL+++ Sbjct: 113 QEQMRLEVEREKMRANLLRAVSHDIRTPLTSIVGSASGIIDNYDALSKENILELLEDMKS 172 Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 E + + + + +S V+ +I + Sbjct: 173 EGQWLVRMVENLLSITRIGDGTARINKEDELVEDVISGAITKFRKRFPDIEVVPKVPEDV 232 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++++NL K+ + V + ++ FS++ +G + Sbjct: 233 LFVPMDAILIEQVIVNLLENCVLHADGMTKIWLIVTEDGDQVKFSVEDDGAGIKESVLPR 292 Query: 166 QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I + + + + E + + L K Sbjct: 293 MFDGSFESEDGKESDSRRNMGIGLSVCMTIVRAHDGIMKAENRKEGGARVMFWLPK 348 >gi|262366468|gb|ACY63025.1| sensor protein KdpD [Yersinia pestis D182038] Length = 800 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 541 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 600 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 601 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALYMLETTLSQHQIRVELP 660 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + + NG + Sbjct: 661 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVQGEWLNVDVWDNGPGVTIGQ 720 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 721 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 775 >gi|258510525|ref|YP_003183959.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477251|gb|ACV57570.1| PAS/PAC sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 533 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 11/217 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59 + +A + + I H+I +P+ AI SLE + E+ + + + Sbjct: 278 RADKISAIAEMAAGIAHEIRNPLAAIRWSLEAMALRFPEAKKELCAMTDELARVDSIVGE 337 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKI 118 ++ K + F VD L + + Q V +V + + ++ Sbjct: 338 LLVLAKPADVQFEAVRVVDVLEVVCLLLQSQARKQKVKIQVVIQDHDLTVLGQPSHLKQL 397 Query: 119 LLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LNL A ++ GG+ + + I S+ +G PE ++ + + + Sbjct: 398 FLNLMKNALEAMRTGGELEIDIRNSNDDYVIVSMVDDGPGI-PPEVLPRLGEPFFTTKPN 456 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ L H + L Sbjct: 457 GTGLGLMTCHKIVRDHGGSLHIANRKPHGTHVEVRLP 493 >gi|254415755|ref|ZP_05029513.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177461|gb|EDX72467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 379 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 52/222 (23%), Gaps = 25/222 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMR------- 68 L S + H++ +P+ + LE L + + Q + + + ++ Sbjct: 156 LVSDLTHELRTPLTVLRGYLEELATQRMDATPAMYQQLAKETRRLERLINDLQELSKAEA 215 Query: 69 -LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLF 123 V+ L + Q D + + EK+ ++L+NL Sbjct: 216 GYLPIKVEPVNVRPLLESLVQKFTDQVLEEGPALQLDCPEKLPRVLADSDRLEQVLMNLL 275 Query: 124 MVAHASLPRGGKVTISVQDSK------NENIFSLKINGNLARFPE---KFTQIVDGNVES 174 A G + ++ G + F + Sbjct: 276 GNAIRHTQTGKITVRVWVERHGIKGIIPRLWIAVTDTGMGIAPEDLPHVFERFWRAEKSR 335 Query: 175 --TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L + E L Sbjct: 336 NPHTGGTGIGLAISKRLVELQGGEIEVESQLGIGSTFRFYLP 377 >gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 962 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 27/236 (11%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 L + + + + + H+I +P+ I ELL + + + + S+ I L Sbjct: 282 RKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPRQQRDHLSTIRKSSEILL 341 Query: 65 KFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108 + ++ + ++ ++ V Sbjct: 342 TIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLVYNDVPDNI 401 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPE 162 + +++ NL A G + ++ S+ +G + Sbjct: 402 MGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEEDKESNRITLRLSITDSGVGLSRAQ 461 Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + + L E ++ E L Sbjct: 462 QQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517 >gi|119468956|ref|ZP_01611981.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7] gi|119447608|gb|EAW28875.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7] Length = 886 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 28/238 (11%) Query: 1 MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56 M + ++ + L + + H+I +P+ AI E L Q + Sbjct: 391 MNSQLELAITQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKIVNDKQHLSTI 450 Query: 57 SMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 ++ + + + V + + I + ++ + Sbjct: 451 LRNSKHLLELINNILDLSKIEAEKLAVEQASVNVVQLVHDIESIITPLAQEKRLELNIIF 510 Query: 103 SWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLAR 159 + + +IL+N+ A +G +K+ F + G Sbjct: 511 DLPIPQTIYTDVTRLKQILINVANNAVKFTEQGHVSICVHYHAKSNLIEFVITDTGIGMS 570 Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + ++ + LA+ + E S Sbjct: 571 EHQIS-RVFKPFEQADATTTRRFGGTGLGLCISKNLANLLGGDIKLESEVGEGSEFSI 627 >gi|219847198|ref|YP_002461631.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541457|gb|ACL23195.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 870 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 61/244 (25%), Gaps = 33/244 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54 + ++ + LL I HD + + I L + +Q + Sbjct: 480 ETQMLQAQKLESLGLLAGGIAHDFNNLLTGIMGHTSLALLDLHPNHELQPHLVAIDQAAQ 539 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109 ++ L + +V+ + ++ ++ V + + + Sbjct: 540 RAAELCSQLLAYAGRGQRSLEAVNLSTLVREMGGILHLPNHRSGHVTIHYDLATDLPSVV 599 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-------------------SVQDSKNENIFS 150 + + +++LNL A ++ G + Sbjct: 600 VEASQIRQVVLNLLTNAIEAIGDRGGSVTLRTGVVTLSATDLRRLNLTPTIPPGRYVTLT 659 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + G +I D + H + V + + + E + Sbjct: 660 VSDTGVGMDEV-TMRRIFDPFFSTKPKGHGLGLAAVQGIVRRHHGAIKVESTPGLGSSFT 718 Query: 211 ALLE 214 L Sbjct: 719 IYLP 722 >gi|115372373|ref|ZP_01459682.1| putative sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115370586|gb|EAU69512.1| putative sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 855 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 57/240 (23%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQL 52 + ++ L S H++ +P+ + ++ELL + ++ Sbjct: 609 EQTQKELREAITLRDQFLSMASHELRTPLTPLKATVELLLRQSDENQVLPLERQRSTLER 668 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVS 103 +R + M G ++ ++ +Q+ Sbjct: 669 LRRQVDRLTRLVSDMLDMARIQGGRLAMRRASMDLTALAREVADRIQHSSRERSAPIQLE 728 Query: 104 WTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A P + + + + + + +K G Sbjct: 729 LPEGPLLGVWDEQRLDQLLTNLIENAARYSPPDAPIQVCIGSTADRALIEVKDQGIGVPA 788 Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214 + + + + + S L Sbjct: 789 ESLPSLFTPFYRARNAAQHYAGGLGLGLAICREIVERHGGTIQASSAGPGQGTRFSVSLP 848 >gi|39995918|ref|NP_951869.1| nitrogen regulation protein NtrY [Geobacter sulfurreducens PCA] gi|39982682|gb|AAR34142.1| nitrogen regulation protein NtrY, putative [Geobacter sulfurreducens PCA] gi|298504932|gb|ADI83655.1| nitrogen regulation sensor histidine kinase NtrY, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 748 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 20/230 (8%) Query: 4 NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55 ++ + + + A + RI H+I +P+ I S + L + + + + Sbjct: 517 DMTQLIKAQRMAAWREVARRIAHEIKNPLTPIQLSAQRLRKRYLPRFGDEDRVFDECTAM 576 Query: 56 SSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 S F R+ + D + + + + + Sbjct: 577 IVKSVDELKTLVDEFSNFARMPAAHPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLP 636 Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKF 164 + ++ +NL A A++ G+V I + + ++ G PE Sbjct: 637 LLQLDRDQIKRVFINLLDNAVAAMGGTGEVRIMSRFDPELKMAVVTVADTGPGI-PPEDK 695 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T++ + + + V + ++ + + L Sbjct: 696 TRVFEPYFSTKASGTGLGLAIVSSIITDHHGFIRVRDNEPRGTKFVIELP 745 >gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 570 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 17/246 (6%), Positives = 63/246 (25%), Gaps = 33/246 (13%) Query: 1 MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49 + + + + L + + + H++ +P+ A+ +++L ++ Sbjct: 185 LQQLVDIKTQQLKLAQVKAEKANEAKSRFLAMMSHELRTPLSAVLGYIDVLLADLKQENQ 244 Query: 50 MQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93 ++++ SA + ++ + + + Sbjct: 245 LEILEKMESSAELLLVLINDILELSRIESGEFPIKYQWVRLNTELKFVLEHFYALADAKG 304 Query: 94 IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + ++ + +I+ NL A G+V ++ + ++K Sbjct: 305 LKFSVNIEFDESLSLWIDPARVMQIVFNLVGNALKFT-HAGEVCLTANVINQHLVITVKD 363 Query: 154 NGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 G + ++ + + L + + Sbjct: 364 TGIGIDKDRLDIVFSEFKQADDSITRSYGGTGLGLTISKHLVGLMSGNISVKSKLGQGST 423 Query: 209 LSALLE 214 L Sbjct: 424 FRIELP 429 >gi|258593669|emb|CBE70010.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 764 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58 ++ ++ V LL I HD + + I EL E + + Sbjct: 372 EDRFRQAQKLEAVGLLAGGIAHDFNNHLSGIIGFAELALGGIPPDSKEYRHLSRVPKIGR 431 Query: 59 SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + F R A +D L + V+ + +++ E + ++ + Sbjct: 432 QAADLVGQVLSFARKAPLQRKPLDLDPLLQETMSVLRRTLPETIAIELEPAREPLVVNAD 491 Query: 115 RAKILLNLFM---VAHASLPRGGKVT---------------ISVQDSKNENIFSLKINGN 156 A++ L A ++P GG +T + ++ G Sbjct: 492 GAQVQQILLNLATNARDAMPYGGTLTLRLTPVTLIEASLGGYPERRLGAFACLTIADTGT 551 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V +A +++ + E + L Sbjct: 552 GIPAA-IRDRIFEPFFTTKEAGHGTGLGLASVYGIAQQHEGWIEVETAEGQGSAFHVFLP 610 >gi|288561543|ref|YP_003428949.1| sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288548175|gb|ADC52057.1| sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 470 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 56/217 (25%), Gaps = 23/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69 + I H++ +P+ + E+L E +++ + ++ + + + Sbjct: 243 ASISHELKTPVSYLMGYSEVLKEKLYQTEEEKEQYLSILEHEATRLNYLISDLFDLSKME 302 Query: 70 ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNL 122 + + L + + V+V + ++ NL Sbjct: 303 EGKFDINKEWIDLTELADNLDMKYSLKAKEKDLLFTVKVDENLSLFYGDGKRIEQVFTNL 362 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTID 177 A G VT + N+ +K G+ E Sbjct: 363 LDNAMRHTTNGE-VTCEFRQGDNQINIIIKDTGSGIPADELPFIFDRFYRVEKSRSREFG 421 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +L + + ++ + Sbjct: 422 GTGLGLAIVKMLVKLHGGTIDITSKENEGTQFTLSFP 458 >gi|317152778|ref|YP_004120826.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316943029|gb|ADU62080.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 879 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 31/241 (12%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIE---DEVMQLIRLSSM 58 L S + A+ L I HD + + +I NS EL L +V + ++ + ++ Sbjct: 500 EKQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSTELALGDVEPDSVTRRDLERVLKAAR 559 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDL 111 +K + + +G + F+ ++ + Sbjct: 560 RGGRVVKQILAFSRPSTEGFRSTDVGAVVSEALGFLEASMPSNIAVRSLVAPSLSCVLAD 619 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLKINGN 156 + ++ +NLF A +L G V + + +++ NG Sbjct: 620 PTQLHQVAMNLFTNAFHALREQGGVIEARVEQVLLDEDEAGVIGLNHGWHVRLTIEDNGP 679 Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE +I D + + + V + +K L V L Sbjct: 680 GI-PPEIVDKIFDPFFSTKDKTEGTGLGLAVVHGIVRSHKGGLQVSPRIGGGTVFEVYLP 738 Query: 215 K 215 + Sbjct: 739 R 739 >gi|269836401|ref|YP_003318629.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269785664|gb|ACZ37807.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 598 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 61/217 (28%), Gaps = 20/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69 + + H++ +PI ++ +E L ++ + E + + ++ + Sbjct: 364 FVANVSHELRTPIASLKALVETLLDGALEDEEVAHEFLARMETEVDGLARLVQDLLELSR 423 Query: 70 --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILL 120 + + + + +D R+++ ++L+ Sbjct: 424 AESGRLTLSPVAADIRRVAEQVIARLRTQAEPKKLDIRIEIPDGLTPGRFDPERIEQVLV 483 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177 NL A P GG +T+ + + + G + F + + Sbjct: 484 NLVHNAVKFTPPGGIITVGAAAEDDHLVVWVADTGPGVAPEDRDRIFERFYKTDRSRADA 543 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + R+ + + L Sbjct: 544 GTGLGLSIARHLVELHGGRIWVDGTARPGTTIKFTLP 580 >gi|257062966|ref|YP_003142638.1| histidine kinase [Slackia heliotrinireducens DSM 20476] gi|256790619|gb|ACV21289.1| histidine kinase [Slackia heliotrinireducens DSM 20476] Length = 340 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 63/223 (28%), Gaps = 19/223 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----SSMSAIIRLKF 66 S + H++ +P+ AI + E L + + ++ + + Sbjct: 115 QQKRQTQFISDVAHELRTPLTAIRGNAETLADPDMPQDLRERFTHTIVSEAERLTRLTND 174 Query: 67 MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER-A 116 + + + + + ++V + + +R Sbjct: 175 LLTLQHIEDGSEQQALQRVNLRTIATDVADVLETLVEDRNGTIEVVGEAPDVLGNPDRLQ 234 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 + + NL A + GG + I ++ ++ I S+ +G + F++ G+ Sbjct: 235 QAIYNLVANACRFIGDGGHIVIRLEGVDDKTIVSVIDDGPGFGDTDPNMLFSRFYRGDNS 294 Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + L Sbjct: 295 RARNTGGTGLGLAIVKSVVEAHDGTVQAFNVASGGACFMIALP 337 >gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] Length = 735 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/248 (10%), Positives = 66/248 (26%), Gaps = 36/248 (14%) Query: 3 KNICFNLSSMDLV---ALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51 K +S +D+ AL+ + + H+I +P+ I LL + +++ + Sbjct: 216 KRQRLLISELDIAEKKALVAAQTKENFLANMSHEIRTPLSGILGFTNLLQKRPLDETSAE 275 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------------- 95 + S + + + ++ + I + Sbjct: 276 FVSSIQRSGENLMAIINDILDLSKIEAGMMRITPGIFSINGLVNSVETFFTERAKEKGLT 335 Query: 96 VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSL 151 + ++ S + + +IL+NL A +G + + + F + Sbjct: 336 ISSTIEPSIPDTLVGDATRLTQILVNLIGNAIKFTHQGNITVEIYSKQQTEKEAVLGFKI 395 Query: 152 KINGNLARFP---EKFTQIVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 G E F + G + + V L + Sbjct: 396 SDTGIGIDKEKLTEIFERFNQGEDSTTRNYGGTGLGLSIVKSLILLQNGNIEVSSEPGKG 455 Query: 207 VVLSALLE 214 + Sbjct: 456 TTFHFYIP 463 >gi|218887072|ref|YP_002436393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758026|gb|ACL08925.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1058 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 52/239 (21%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK + S + + H+I +P+ I L+LL + + ++ S Sbjct: 604 AKEVAEAASRTK--GEFLANMSHEIRTPLNGIMGMLQLLQTDPPKAMRTVYVGAATQSCR 661 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105 + + + L D + V Sbjct: 662 RLGLLLGDILDLSRIEAGKLELHDEPFEARAVLDEVRGLFEGPAAERGLTLRVSVDERIP 721 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARF 160 + ++L NL A + + + +F+++ G Sbjct: 722 RHLRGDAMRLRQVLFNLVGNAVKFTDQGEVVVEAWRVQASRSRGCRVVFTVRDTGIGIAE 781 Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + E S L Sbjct: 782 ERLKDIFEPFVQAETASTRRYQGAGLGLPIVRRLVRLMCGTVTVESTPGAGTAFSVSLP 840 >gi|160887727|ref|ZP_02068730.1| hypothetical protein BACUNI_00128 [Bacteroides uniformis ATCC 8492] gi|156862758|gb|EDO56189.1| hypothetical protein BACUNI_00128 [Bacteroides uniformis ATCC 8492] Length = 479 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 25/237 (10%) Query: 1 MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 + KNI L S S I H++ +PI AI SL+LL++ + DE QL Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDKRVGVLNDEQEQLSNS 301 Query: 56 SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +A +++ T ++ + QV D + V+ Sbjct: 302 IKENADRLLGITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVE 361 Query: 102 VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 S + A +L NL A G+V I + ++ ++ G Sbjct: 362 YPEEKMPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHDEDFVEMYVQDFGKGID 421 Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + L + L+ Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSELGKGSRFVIRLK 478 >gi|153002705|ref|YP_001368386.1| osmolarity sensor protein [Shewanella baltica OS185] gi|151367323|gb|ABS10323.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS185] Length = 438 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 10/219 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 MA ++ ALL + I HD+ +P+ I + E++ ++ ++D ++ I Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 279 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + ++R + + + L E A + V ++ E + ++ Sbjct: 280 IISQFIAYIRQDQETSRELGQINKLIQDVAQAEANRAGEIEVVLTDCPEAQFQAVAIKRV 339 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175 L NL A G + IS Q F+++ NG P+ F G++ Sbjct: 340 LSNLVENAFRYGS--GWIRISSQFDGKRIGFTVEDNGPGIDEPQITKLFQPFTQGDIARG 397 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + ++ L Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQVTLSNRAEGGLIAQVWLP 436 >gi|187927855|ref|YP_001898342.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187724745|gb|ACD25910.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 818 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 60/239 (25%), Gaps = 28/239 (11%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + + S A+ + I H+I +P+ I SLELL + + + ++ Sbjct: 311 RARVAAVRSEREKAMFLAFISHEIRTPMHTILASLELLQRSQLTGQQASRADAAVSASET 370 Query: 63 RLKFMRLAFGYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 L + Y+ ++ V + + Sbjct: 371 LLALLDDVLEYSRLESRSVTLVLQPTAIGPWAEQALDMVRWRSDEKKLALSLDLACAPDF 430 Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARF- 160 + +I+LNL + A G V + ++ G Sbjct: 431 SVDIDAMRVRQIVLNLLVNAIKFTTVGKVVLRVDYLPGKRRGSGTLVLEVRDTGMGIPPE 490 Query: 161 -----PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E + ++ + L + + V + +L Sbjct: 491 RQRNIFEPYARVESPG-NRGASGTGLGLSICHELVELMGGVITVSSSPEVGTVFTVMLP 548 >gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 957 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 57/225 (25%), Gaps = 27/225 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63 + + + H+I +P+ + ++LL + E + ++ SA Sbjct: 581 SEFLANMSHEIRTPMNGVIGMVQLLQFTRLNSEQQEYLQCLETSAQNLLSLLNDILDLSK 640 Query: 64 ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + A + I Q+ + + + + +IL Sbjct: 641 IEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLRLKQIL 700 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGN---- 171 LNL A G + + S+ G PE +I Sbjct: 701 LNLLGNAIKFTAAGSITIAARITDQQNGTLTICLSVSDTGIGM-TPEALQRIFAPFEQAD 759 Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA R+ E D H L Sbjct: 760 NSTTRRFGGTGLGLTICRRLAELMGGRIWAESSDGHGSSFFVELP 804 >gi|114319836|ref|YP_741519.1| two-component sensor kinase CbrA [Alkalilimnicola ehrlichii MLHE-1] gi|114226230|gb|ABI56029.1| Two-component sensor kinase CbrA [Alkalilimnicola ehrlichii MLHE-1] Length = 975 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 74/227 (32%), Gaps = 19/227 (8%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 S L ++ L + + H+I +P+ + + L + + + + + Sbjct: 745 ERELAHSERLASIGRLAAGVAHEIGNPVTGVACLAQNLRDEDDPELIRESMEQILEQTHR 804 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------ 116 + Y + + + ++ + + + +S G++++ Sbjct: 805 ISNIVHTLVSYAHAGSTEESPPEPVRLHDAAEEARQVMVLSRRGKEMEFDNRIPPHLEVA 864 Query: 117 -------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ +NLF A + + G++ ++ ++ + I + NG +++D Sbjct: 865 GDSQRLVQVFVNLFSNAADACAQQGRLVLTARERGDRIIVRVADNGPGIPASALK-KVLD 923 Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ L E ++ L Sbjct: 924 PFYTTKPAGQGTGLGLPLVYNIITDHGGTLDIESDVG-GTTVTLELP 969 >gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum gilvum SL003B-26A1] gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum gilvum SL003B-26A1] Length = 787 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/255 (11%), Positives = 65/255 (25%), Gaps = 43/255 (16%) Query: 2 AKNICFNLSSM-DLV-----------------ALLCSRICHDIISPIGAIHNSLELLDE- 42 + + + +L + + I H++ +P+ AI +++D Sbjct: 519 RQTLEMQAQQLVELAEKYAQEKTNAENANRAKSEFLANISHELRTPLNAIIGFSDIMDRG 578 Query: 43 ---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------------D 85 + + R S L + + + + Sbjct: 579 MFGPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGRMEMTVKPLGVEAVVEEAGR 638 Query: 86 IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 I + A++ +V R ++LLNL P G V +SV + Sbjct: 639 IIRAPAQEKAIEVTCEVEPGLAVAADRRALKQVLLNLLSNGVKFTPEKGTVRLSVHRAGG 698 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLP 199 F + G R + ++ T + L L Sbjct: 699 LARFEIADTGIGIRKADV-DRLAQPFVQVENQFTKTHKGSGLGLAIARSLVELQGGTLTI 757 Query: 200 EIIDDHNVVLSALLE 214 + ++ L Sbjct: 758 ASVPGQGTRVAFTLP 772 >gi|283853644|ref|ZP_06370878.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283570977|gb|EFC19003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 490 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 16/225 (7%) Query: 5 ICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60 + L S L A+ L I H+I +P+ AI LL + + + + Sbjct: 257 LERRLQKSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGLASREKASIILSES 316 Query: 61 IIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ + S+ + A + ++ + + Sbjct: 317 KRLDAILKDIINFARPTSSVPGEVNVNDVAARTTALMRHGLEAQHITLTLALSPDTPMAR 376 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + LLN + ++P GG++T++ + S+ +G P+ Q+ + Sbjct: 377 GDPETLTQCLLNCLKNSMEAMPGGGRITVATGLRQGRVFLSVADDGPGI-APDILPQVFN 435 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E H ++ L Sbjct: 436 PFFTTRDKRAGLGLAMTKKILEDLGGAVDLESPPGHGATVTLFLP 480 >gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1105 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 59/241 (24%), Gaps = 29/241 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + L + + I H++ +P I +LL + G+ S Sbjct: 535 RQAEESAIKATKLKSQFIANISHELRTPCHGILGMTQLLLDSGLTPNQRDSAETIKRSID 594 Query: 62 IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW------ 104 + + ++ + + + ++ + + + Sbjct: 595 GLINLINDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIGRQSP 654 Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLAR 159 SR ++L+NL A G V + ++ FS+K G Sbjct: 655 VPPMLYGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTGIGIP 714 Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 Q+ + L + E L Sbjct: 715 DS-VSEQLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGSCFWFSL 773 Query: 214 E 214 + Sbjct: 774 K 774 >gi|255020498|ref|ZP_05292562.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus caldus ATCC 51756] gi|254970018|gb|EET27516.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus caldus ATCC 51756] Length = 927 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 20/234 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54 +L + + L S + HD+ +P+ I SL L+ E + + + Sbjct: 684 RSEADLHLQLERMQSALLSAVSHDLRTPLTTILGSLGTLERLHGTLPEAEQQQLIRDIRT 743 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108 + + + +R+A +G + + ++ + Sbjct: 744 ETERMSQTMERILRVAALLSGGAELHKEWVPLTDILGSARRERQSPCADRPFNVQIPADL 803 Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162 ++L NL A P G V I + E + +G E Sbjct: 804 PLLHGDPTLLTQVLGNLIENACRYTPPGTAVDIQAWANPQEIFVCVIDHGYGIPPGRERE 863 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215 F + + + + R+ + L + Sbjct: 864 IFERFSRVKPPVGTGGSGLGLAIAQSVLQMHGGRIWASNQVMNRGAKFCFSLPR 917 >gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000] gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000] Length = 600 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 64/235 (27%), Gaps = 27/235 (11%) Query: 6 CFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59 + + L A + + H++ +P+ AI +++ + D + L S Sbjct: 320 QARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHES 379 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------VQVSW 104 L + + L + + R V Sbjct: 380 GGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPG 439 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 E R +I+LNL A PRGG+VT++ + G + Sbjct: 440 ELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDL- 498 Query: 165 TQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V A + ++ E +S L Sbjct: 499 ERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLP 553 >gi|215433463|gb|ACJ66697.1| sensor histidine kinase [Myxococcus fulvus HW-1] Length = 466 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 20/231 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVMQ 51 + + + V L + + H++ +P+ A+ NS L + + + Sbjct: 229 QEHLIRVEKLAAVGQLAASVGHELRNPLAAVRNSHAYLSRKLTKDPAGAADDPRVPQFLG 288 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTG 106 L+ + + + L + + + V++ Sbjct: 289 LMERELNACAKIISDLLDFARERPPALQPCPLRPLVDEAIGVVPQREGVRIVNGVPESLP 348 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEK 163 + ++L+NL A ++P G +SV + +G PE Sbjct: 349 VPNLDKEQFRQVLVNLVQNAVEAMPVGRNGEVSVMAEGGDAQPWCIRVVDDGAGI-PPEV 407 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + V + + + + L Sbjct: 408 LPKIFEPLFTTKTRGTGLGLAIVANMVQRHGGTISVRSEAERGSEFLIELP 458 >gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 954 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 36/249 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54 + K + + L + + H++ +P+ I E L + + + +I Sbjct: 557 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTLNPNQHHAIAMIE 616 Query: 55 LSSMSAIIRLKFMRLAFGY--------------TGSVDSLIGLGDIEQVIEDFIAVDKRV 100 S + + + +S + L + + Sbjct: 617 KSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLAFTKQINIESNIP 676 Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSL 151 Q +R ++L+NL A + T + FS+ Sbjct: 677 QQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNLAISTPQSIYFSV 736 Query: 152 KINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 NG + ++ + V + + + Sbjct: 737 VDNGIGIATDDL-DKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGK 795 Query: 206 NVVLSALLE 214 + L Sbjct: 796 GSCFTVYLP 804 >gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1002 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 19/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 + ++ +L + +++ H++ +P+ AI +++ + + + + + + + S Sbjct: 517 EEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRDSSLSSQQQEYLGIINRSG 576 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104 L + L + + + ++ + ++ V Sbjct: 577 EHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEEL 636 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158 + +I++NL A G + + +K G Sbjct: 637 PKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQLEVKDTGIGI 696 Query: 159 RFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E T + + A + + + ++ Sbjct: 697 NQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLGQGSTFTCTIK 756 >gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1308 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 71/240 (29%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 + K +++ ++ + + H++ +P+ AI +LL + + E ++ +++ + S Sbjct: 833 LQKAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGRDHCLRPEHLERLQIINRS 892 Query: 60 AIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQV----S 103 L + + + + E + R+ + Sbjct: 893 GEHLLGLIDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQPKAKTRGLRLIIEKSFD 952 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLAR 159 ++ ++L+NL A G + ++ +F ++ G Sbjct: 953 LPQYIKTDEKKLRQVLINLLNNAIKFTQEGTVILRVKPKAAENTPQRLVFEVEDTGVGMA 1012 Query: 160 FPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Q+ V++ + + + V S +E Sbjct: 1013 PDDI-DQLFKVFVQAEAGKKLNQGTGLGLAISQKFVQLMGGEIEVKSTLGKGSVFSFEIE 1071 >gi|153214295|ref|ZP_01949312.1| sensor histidine kinase [Vibrio cholerae 1587] gi|124115443|gb|EAY34263.1| sensor histidine kinase [Vibrio cholerae 1587] Length = 736 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 60/237 (25%), Gaps = 26/237 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + +S ++ + + H+I +P+ + + ++L + + + Q + S Sbjct: 343 LEAEKVKAQASTKAKSVFLATLSHEIRTPMNGVLGTAQILLKDELTPKQRQHLTSLYESG 402 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104 + + Y+ L ++ I K + ++ Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161 +I+ NL A G D +N I ++ G Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521 Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 E +I + V +A +L + Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578 >gi|115376010|ref|ZP_01463257.1| sensory histidine protein kinase [Stigmatella aurantiaca DW4/3-1] gi|115367009|gb|EAU65997.1| sensory histidine protein kinase [Stigmatella aurantiaca DW4/3-1] Length = 413 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 19/240 (7%), Positives = 48/240 (20%), Gaps = 27/240 (11%) Query: 2 AKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEV 49 + L S H++ +P+ + LE L + Sbjct: 170 TREFEQLLQKEREGVKSRDEFLSIAAHELRTPLTPLKLQLETLRRSVVAAGIDDPWVMRH 229 Query: 50 MQLIRLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDK 98 ++ + + + + I + D Q + Sbjct: 230 LERSSVQVQRLLQLVDRLLDVSRIATGRLGLLLEDMDLSALTIEVTDRFQEEAEGAGCPL 289 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 V + ++L +L A + ++ G Sbjct: 290 EVHTPGRVRGVWDQLRLEQVLSSLISNAIKYGAGHPIDVSVEGK-EEVVRLCVQDQGIGL 348 Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F + + Y + + + +L K Sbjct: 349 APEDASRIFERFERAVSPKHYGGMGLGLYVARQIIEAHGGTIAVRSQPGRGATFIVVLPK 408 >gi|53722385|ref|YP_111370.1| two-component sensor kinase protein [Burkholderia pseudomallei K96243] gi|52212799|emb|CAH38831.1| putative two-component sensor kinase protein [Burkholderia pseudomallei K96243] Length = 737 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 496 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 552 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 553 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 612 Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ ++ + + + ++ NG P+ F +I Sbjct: 613 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 671 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 672 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 723 >gi|46578686|ref|YP_009494.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|120603748|ref|YP_968148.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|46448098|gb|AAS94753.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|120563977|gb|ABM29721.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|311232557|gb|ADP85411.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 756 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 18/240 (7%), Positives = 66/240 (27%), Gaps = 29/240 (12%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQ 51 + + + + L + + + H++ P+ I + L + + Sbjct: 512 EAEQKVIQAGKMATLGEMATGVAHELNQPLTVIKAASGFLLRKARKGEPVAPDVLSTMTA 571 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108 + A ++ MR + V + + ++ + +F + V+ + Sbjct: 572 EMDAHVDRASRIIEHMREFGRKSDIVLERVSVNEVLRSATEFFSRQMTVRGITIEWQLDA 631 Query: 109 -----IDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGN 156 + ++ ++++NL + A ++ + E + + +G Sbjct: 632 SEPVVMAVANRLEQVVINLLLNARDAIEEHAAAHDARRVITLRTETDGREVVMEVCDSGP 691 Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + L + + + + Sbjct: 692 GI-PRALQQRIFEPFFTTKKVGKGTGLGLSISYGLVKDFGGSISVGDAPGGGARFTVRMP 750 >gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS] gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS] Length = 399 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF------ 66 S + H++ +P+ +I E L ++ + +I + + Sbjct: 176 FVSSVSHELRTPLASIKGYTETLLEGAMNDPENATAFLNIIHQEAEQLTALVNDVLDLSR 235 Query: 67 --MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRERAKILL 120 VD L + E A + ++ Sbjct: 236 IESGKIAYSFEPVDVKPQLEKTAALFEPAAARKGVRIELNAPEGLPAVLADRSYFDIVVR 295 Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173 NL A + +V +S + + + NG + +I + Sbjct: 296 NLIDNAIKYVDAESGRVRVSAYATGDSVSIEVADNGIGIPQADL-DRIFERFYRVDKARS 354 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + +K ++ + + L Sbjct: 355 RELGGTGLGLSIVKHIVLAHKGKVEVRSRINRGTTFTVTLP 395 >gi|332703717|ref|ZP_08423805.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553866|gb|EGJ50910.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 697 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 71/245 (28%), Gaps = 33/245 (13%) Query: 2 AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52 K + L M+ + L I HD + +G I E++ E + ++ Sbjct: 307 RKRLEEQLRIAQKMEAIGTLAGGIAHDFNNILGVITGYTEIILENTDKGSSLERRLKEIL 366 Query: 53 --IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGE 107 R + L F R ++ + + +++ + ++ ++ Sbjct: 367 GACRRAKDLINQILNFSRQGTQEKKALRVSPLIKETVKLLRTSLPASLDIRENIMTGNDT 426 Query: 108 KIDLSRERAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSL 151 + + +ILLNL A ++ + + ++ Sbjct: 427 VMADPSQIHQILLNLCTNAAHAMRERGGLLEISLAEVHLDEATVSKTPGLSAGAYVVITV 486 Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 +G+ +I D + + + V + ++ + + + Sbjct: 487 TDSGHGIPKT-IQEKIFDPFFTTKKPGEGTGMGLAVVHGIVKQHNGVVYVQSEEGKGASF 545 Query: 210 SALLE 214 LL Sbjct: 546 QVLLP 550 >gi|326406912|gb|ADZ63983.1| two-component system histidine sensor kinase [Lactococcus lactis subsp. lactis CV56] Length = 517 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 15/209 (7%) Query: 20 SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-----RLA 70 + + H++ +P+ +I ELL+ +I S + ++ + Sbjct: 309 ANVSHELKTPLTSIKGFAELLETDSISSSDTKNFASIINKESSRLMNLVQDTLLLTKQNH 368 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 ++ + +I Q I I NL A Sbjct: 369 RIDKKKINLTTLIQNILQSSGPQINEKSLHLESQIEEITFKTNEPMVHSIFENLIENAIK 428 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVES-TIDSHDIQFY 184 P G++ +S+ +N+ IFS+ NG + F + + + + Sbjct: 429 YTPANGQIFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLA 488 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213 V E + I + L Sbjct: 489 IVEKNVQELHGTIDVVSILGKGTTFTVNL 517 >gi|321225247|gb|EFX50306.1| Aerobic respiration control sensor protein arcB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 608 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|304396312|ref|ZP_07378193.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] gi|304355821|gb|EFM20187.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] Length = 777 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E ++ ++ +SAI Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + Q+ +IL NL Sbjct: 348 KVQLDNQPLDFTGFLADLENLSGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177 A +G V + F ++ +G R E+ Sbjct: 408 GNAVKFTQQGEIVVRVTYEQDETLRFEVQDSGMGIRQDEQDKIFAMYYQVKDQHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I LA + + ++ Sbjct: 468 GTGIGLAVSRRLAQAMGGDIRVHSAPGQGSCFTVEIK 504 >gi|299537508|ref|ZP_07050802.1| putative sensor-like histidine kinase yclK [Lysinibacillus fusiformis ZC1] gi|298727069|gb|EFI67650.1| putative sensor-like histidine kinase yclK [Lysinibacillus fusiformis ZC1] Length = 453 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 20/232 (8%) Query: 3 KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57 +++ L ++ + S + H++ SP+ +I L + + + +I + Sbjct: 218 EDMAEELQQLEQMRRDFVSNVSHEVQSPLTSISGYALALKQVDVTDDEKRRYLDIIISEA 277 Query: 58 MSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107 + +D+ I +VI + + Sbjct: 278 NRMSKMSDSLLKLSLLESKTQPMLLDTFSLDEQIRRVIVSLQPQWSSRNIDFELQLKAVR 337 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + + ++ N+ + + IS++ S N + G ++ Sbjct: 338 LMADYDQLHQVWTNILTNSIKFSNANATIEISMKQSANHVTVRITDRGIGISLEDQQRIF 397 Query: 168 VDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + E H + L Sbjct: 398 ERFFKADRSHSHKYDGSGMGLALVKQIVSLHRGEIEVESELRHGTTMIVRLP 449 >gi|297582756|ref|YP_003698536.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297141213|gb|ADH97970.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 679 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 20/232 (8%), Positives = 58/232 (25%), Gaps = 22/232 (9%) Query: 5 ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSM 58 AL + + I H+I +P+ +I +EL+ + + + + Sbjct: 433 RNKVFEQEKNQALSRVVAGIAHEIRNPLSSIKTFVELIPRKINNQKFQEEIATYVPKEIV 492 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDL 111 ++ + + G + + + Sbjct: 493 RVSELIEGLINYARPRHQEPEAVDAGILMHESFILFERTGKNKGMTLELNQEEGLWIEVD 552 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLARFPEK 163 ++ + ++NL + ++ S+ G E Sbjct: 553 PQQVKQAVINLIINGLDAMEARKNTEGGGTMTLTLAVFEQDGCVHLSVTDEGIGMADDEL 612 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++++ + + L +N LL ++ + K Sbjct: 613 -AKVLEPFYTTKDKGSGLGLAISSQLVKDNGGELLIVSEKGTGTTMTLVFPK 663 >gi|291546163|emb|CBL19271.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5] Length = 336 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 22/233 (9%) Query: 3 KNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLI 53 N + ++ L S + H+ +PI AI LL + + +++ + I Sbjct: 104 SNFNLMVQELEATEILQTDFVSNVSHEFKTPISAIEGYATLLQDDDMPISEEQEQYINKI 163 Query: 54 RLSSMSAIIR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 ++ +D I + + + Sbjct: 164 LFNTRRLSHLAGNILLLSKIEHQSIQTRQNWYRLDEQIRQSIVMMEPKWSEKEIEFDVDM 223 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---F 160 E + + NL A P GG + I + + FS++ G Sbjct: 224 MDVEYLGNENLICHVWDNLLSNAIKFSPCGGTIYIRMMPEGEKIRFSIENEGPQISEYSM 283 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 F + G+ + + + V + + + E I + +L Sbjct: 284 KHIFDKFYQGDSSHKQEGNGLGLALVKQILNLCMGTVSVENIPGSGCRFTVIL 336 >gi|238910122|ref|ZP_04653959.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|168463446|ref|ZP_02697363.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633140|gb|EDX51554.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|167994521|ref|ZP_02575612.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205327619|gb|EDZ14383.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248493|emb|CBG26330.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995527|gb|ACY90412.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159877|emb|CBW19396.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131688|gb|ADX19118.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990186|gb|AEF09169.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|197265807|ref|ZP_03165881.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244062|gb|EDY26682.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 485 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 69/262 (26%), Gaps = 49/262 (18%) Query: 2 AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEV---------- 43 + + + L + S + H++ +P+ AI ++L E Sbjct: 207 EEEQSQRVHRLRLALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQEEYFGGLNTKQK 266 Query: 44 GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDK 98 +++++ + L R+ G + + I + + E Sbjct: 267 QYVNDILESGKHLLDLINDILDLSRVESGEMKLEVEPLLISFILESSLHLIREKAFKHGI 326 Query: 99 RVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGGKVT---------------I 138 + V + E ++ + +IL NL A P G + Sbjct: 327 EITVDVSDEIREMAILADHTKLKQILFNLLSNAAKFTPDKGAICVGARVIHDPVDGGGSQ 386 Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHEN 193 + D+ ++ +G +K D + L + Sbjct: 387 DLDDNPGWIEVFVRDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGLGLPLAKRLVELH 446 Query: 194 KIRLLPEIIDDH-NVVLSALLE 214 R+ E H L Sbjct: 447 GGRIWVESEGRHQGSCFVFTLP 468 >gi|161616338|ref|YP_001590303.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168243164|ref|ZP_02668096.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262659|ref|ZP_02684632.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451313|ref|YP_002047357.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387522|ref|ZP_03214134.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|161365702|gb|ABX69470.1| hypothetical protein SPAB_04147 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409617|gb|ACF69836.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604620|gb|EDZ03165.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205337795|gb|EDZ24559.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348428|gb|EDZ35059.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|16766623|ref|NP_462238.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16421886|gb|AAL22197.1| sensory histidine kinase in two-component regulatory system with ArcA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312914355|dbj|BAJ38329.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|116750101|ref|YP_846788.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116699165|gb|ABK18353.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 339 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 72/226 (31%), Gaps = 14/226 (6%) Query: 2 AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58 + L + L A+ S + HD+ +P+ AI +LL + D ++ + + Sbjct: 110 RREQKRALEAGRLAAIGKAISCVAHDMKTPLIAIGGFGQLLMKHFETGDPRLEKLEIIVK 169 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEK 108 +R ++ ++ D+ ++ + V + Sbjct: 170 ETRRLEMMVREMLDFSRPLELHRSEEDMCLLVRESLEVVNEAATAKRVIVFSTPANPPRI 229 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++L+NL + A + P G VT++ + + G+ + I Sbjct: 230 SVDPLRIKQVLINLMINAVEASPEGEIVTVATYKQGRNLVIDVSDKGDGIPDGKAEE-IF 288 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + ++ RL +++ +L Sbjct: 289 SPFYTTKKDGTGLGLTIARKIVEAHEGRLELLQNSGKGLIVRVILP 334 >gi|332702127|ref|ZP_08422215.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552276|gb|EGJ49320.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 485 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 17/221 (7%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63 S + ++ + S I H+I +P+G I +S ELL + ++++ + Sbjct: 261 QSEKMASMGRMVSGIAHEIRNPLGIIRSSAELLLGKSRREDPKSSHTRILQAIFDESKRL 320 Query: 64 LKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113 + + Y L + + V+ + + + Sbjct: 321 SRTVNEFLDYARPKAPRLEPVDVTQVLDQMAVFLESKLQQQEVELAREYAPGVLIMADRD 380 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + NL A +L GK+ ISV + + + +++ +G PE ++ D Sbjct: 381 LIYRAFYNLVANALEALNGPGKIRISVNAAAGQVMVNIEDSGTG-FAPETLEKLRDPFFT 439 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ + + + Sbjct: 440 TKDSGTGLGLTIVDTILGGHGAQMHLGNNPEGGARVEIIFP 480 >gi|327478668|gb|AEA81978.1| signal transduction histidine kinase [Pseudomonas stutzeri DSM 4166] Length = 803 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 29/236 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55 + L S + H++ +P+ +I +L L+ + G E++ + + Sbjct: 565 ERKRIERLQRE-----FISTVSHELRTPLTSITGALALVCSNVMGEVPGQMRELLDIAQQ 619 Query: 56 SSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 +S + + + L+ ++ A VQ+ Sbjct: 620 NSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSYAERHGVQLRLGDCP 679 Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++L NL A P G +V + + S++ G E Sbjct: 680 AVQVEIDAMRLQQVLSNLLSNAAKFSPPGEQVELLARMRDGHVRVSVRDRGPGI-SDEFR 738 Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + L ++ E L Sbjct: 739 ERVFQKFAQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESAPGQGACFWFELP 794 >gi|319901471|ref|YP_004161199.1| integral membrane sensor hybrid histidine kinase [Bacteroides helcogenes P 36-108] gi|319416502|gb|ADV43613.1| integral membrane sensor hybrid histidine kinase [Bacteroides helcogenes P 36-108] Length = 1345 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 20/231 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDE--VGIEDEVMQLIRLSS 57 + K +S M + + I H++ +P+ I L ELL E E + ++ ++ Sbjct: 818 LDKEKREEISQMKIRFYV--NISHELRTPLTLIVAPLQELLSRISGHWEHEQLLYVQRNT 875 Query: 58 MSAIIRLKFMRLAFGY---TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 + + + + ++ + + ++ Sbjct: 876 NRLLHLVNQLMDFRRAELGIFELRAVYSNAYKRVLGCFMNYESLSKRKDIDYNFYTELQD 935 Query: 115 RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + + A G +T+ + N+ + + G PEK Sbjct: 936 ENVLFDENYLDLIVNNLLSNAFKYTEIGESITVKLYVEDNDLVLQVIDTGIGI-PPEKQE 994 Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + I V L + R++ + + L Sbjct: 995 KIFERFYQVENGHKGSGIGLSLVQRLVELHHGRIVLQSEVGKGSTFTINLP 1045 >gi|301166213|emb|CBW25788.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 936 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 24/236 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 + + + ++ + + + H+I +P+ I LL E + E ++ + + S+ Sbjct: 552 RERTKKLIHANEVKSNFLANMSHEIRTPLNGILGISSLLYERMEKKENIEYLNIIKRSSE 611 Query: 62 IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107 L+ + ++ D L DI+ ++ ++++ W + Sbjct: 612 DLLQIINDILDFSKIESDGIELESLPFDLHKELEDIKNLMISSSTSQNKIEIFWDNDLTK 671 Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPE 162 +IL+NL A+ G + + +K NG Sbjct: 672 VYTSDRLRIRQILINLIGNANKFTTNGKIEITVKELSSSQEISNLQIIVKDNGIGIPATS 731 Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + LA + E + + + Sbjct: 732 QSNIFKSFTQADISTTRRFGGTGLGLSISKALAEIFGGDITFESEEGKGTTFTFSI 787 >gi|239623925|ref|ZP_04666956.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521956|gb|EEQ61822.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 657 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 61/242 (25%), Gaps = 29/242 (11%) Query: 2 AKNICFNLSSMDL----VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + N ++ L AL + S I HD+ +P+ ++N LELL + I + Sbjct: 414 QRTAQLNHANEQLEASQAALQEMISNISHDLKTPLTVLNNYLELLGDEMIASSEQERTEY 473 Query: 56 ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + + + F T + R +K Sbjct: 474 LGIAYHKNLDLQRLIHNLFEVTRMEGGTAVYHPEWVSAGKLMVEADRKYGDLVRDKGITF 533 Query: 113 --------------RERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNL 157 + +L NL A P G +D N + G Sbjct: 534 LARAEGMLELQLDKNKIWSVLDNLVYNALRHTPEGGSISLCISRDVDNRAALRVSDTGEG 593 Query: 158 A---RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 P F + S + Y V A + E V + Sbjct: 594 IAAAHLPHIFERFYKVSPERGEKDGSSGLGLYIVKTTAEAMGGSVRVESTLGKGTVFTVT 653 Query: 213 LE 214 Sbjct: 654 FP 655 >gi|169829138|ref|YP_001699296.1| sensor protein [Lysinibacillus sphaericus C3-41] gi|168993626|gb|ACA41166.1| Sensor protein [Lysinibacillus sphaericus C3-41] Length = 895 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSS 57 + + + + A L I HD+ +P+ AI + ++L ++ L Sbjct: 659 LHEEVAREAEMEQMRANLLRAISHDLRTPLTAISGNADILLNNAPLIPDIEKNKLYEDIF 718 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114 ++ ++ + + D L +++ED I V + Sbjct: 719 NNSKWLVQMVENLLAVSRLEDGQFALEIQLELVEDIIQEALSHVVHQNSSHKISYQIEPE 778 Query: 115 ----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++ +N+ A P G +TI V++ FS+ NG Sbjct: 779 FLLSLMDARLMIQVFINIIDNALTYTPPGSDITILVKECDGLVNFSISDNGPGIDDS-LK 837 Query: 165 TQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + + ++ + + L+K Sbjct: 838 SSLFEPFTTGKVQRSDSRRGLGLGLALCQTILKLHGSQITVSDNKPQGTIFNFSLKK 894 >gi|157148781|ref|YP_001456100.1| aerobic respiration control sensor protein ArcB [Citrobacter koseri ATCC BAA-895] gi|157085986|gb|ABV15664.1| hypothetical protein CKO_04614 [Citrobacter koseri ATCC BAA-895] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 55/215 (25%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLDPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDVLHFDVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + V + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSQPGKGSVFTLT 502 >gi|94266170|ref|ZP_01289881.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93453257|gb|EAT03709.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 787 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 66/242 (27%), Gaps = 28/242 (11%) Query: 2 AKNICFNL--SSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53 K I L S +L + HD+ P+ +++ ++LL+ + + Sbjct: 536 RKRIELALNQQSAELARSNAELEQFAYVVSHDLRQPLRMVNSYMQLLERALDDKLDDETR 595 Query: 54 RLS-------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRV 100 + + + + + + + + +V Sbjct: 596 EMMGFAVGGAQRMDQMLVSLLEYSRVGRKGEPMVPLASRQAVDEALDFLAPETKEAGAKV 655 Query: 101 QVSWTGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNL 157 +VS +I SR+ ++ NL A + + FS+ NG Sbjct: 656 KVSGDWPEIVASRDEFTRLWQNLIGNALKYRDPDRVCEVEISVTPEDGGWRFSVADNGIG 715 Query: 158 A--RFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALL 213 + ++ ++ + I + + R+ E L Sbjct: 716 IDPQQFDRLFKVFQRLHTRDKYEGTGIGLAVARKIVERHGGRIWVESEGAGQGCRFIFTL 775 Query: 214 EK 215 K Sbjct: 776 PK 777 >gi|332160895|ref|YP_004297472.1| sensor protein KdpD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665125|gb|ADZ41769.1| sensor protein KdpD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 899 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I ++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHILETTLNHHHIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + NG + Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + L Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883 >gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC BAA-1498] Length = 769 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 25/238 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56 + + S+ + + I H++ +P+ AI E++ + + + Sbjct: 529 LQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDI 588 Query: 57 SMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 S L + + + + + Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNI 648 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 R +I LNL A P GG + I N IFS+K G E Sbjct: 649 EQKLHADVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGI-PQE 707 Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ T + L +K +L + +++ ++ Sbjct: 708 AIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEGKGTIVTIIMP 765 >gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1259 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60 K+ +L + I H++ +P+ I LE LL+E + + + + S+ Sbjct: 770 QKDQELHLERIRFFT----NITHELRTPLTLILGPLEDLLNEKTLCEAHKSKVSVIHKSS 825 Query: 61 IIR----LKFMRLAFGYTGSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKID 110 + + + + + + ++ + + + + Sbjct: 826 LRLLALINQILDFQKTQSQLRKLNLIPGDLSLAVFEIGKKYQDLNRNEEIHLELDVPEWN 885 Query: 111 LSRER-----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162 +L NL A +G + + + G + Sbjct: 886 DKIYFDEEVLHIVLENLLSNAFKYTQKGEIRLELQKSGDSWVKIQVSDTGKGIPPASLDK 945 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + +S + I V L + ++ + L Sbjct: 946 IFERYYQVEEDSKVSGTGIGLALVKSLVELHLGKIEVSSELGKGSSFTVYLP 997 >gi|296448198|ref|ZP_06890095.1| response regulator receiver sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296254282|gb|EFH01412.1| response regulator receiver sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 536 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 12/227 (5%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSS 57 + + L + + + + + HD+ +P+ I + E L + + ++ IR S Sbjct: 152 LERQRQQLLQAERMREMFVAILGHDLRNPLQGIKTATERTMRLTQDEEARKTLESIRQSG 211 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109 + + I + + RV+ S + Sbjct: 212 DRMARMIAQILDVTQMRAGAGLTIRRAPTELSLVVEQIVDEFSAHRRLLRVEYSGDTRGV 271 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIV 168 + +++ NL A P GG V + V F + G + Sbjct: 272 WDADRLLQLVSNLVGNAVEHGPPGGHVHVRVDGRAPAWVKFEVHNGGCGLPKQLRDVLFE 331 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + E D+ + L + Sbjct: 332 PFRSGDRTRGLGLGLFICKQIVEAHGGAIDVESTDETGTAIRISLPR 378 >gi|317499214|ref|ZP_07957489.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291560399|emb|CBL39199.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] gi|316893528|gb|EFV15735.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 495 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +I + L S I HD+ +PI AI +E + + E M + + Sbjct: 250 LKDSIDARIVYEKQNRDLISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTVYN 309 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKIDLSRERA- 116 + + +DS I + E++ + D + + S Sbjct: 310 KANDMNVLINELSLYSKIDSNIIPYNFEKININSYFKDCVDEIGADLEQRGMMFSYRNYC 369 Query: 117 --------------KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 +++ N+ A + + + ++K NG Sbjct: 370 AANVMVTADPEQLKRVINNIINNACKYNNKAKGKVGITLTEYDRKVQVAIKDNGIGISKE 429 Query: 162 EKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E+ + E + L K Sbjct: 430 DLPHIFRRTYRADMSRNSAGGSGLGLSICKKIIEEHGGEIWAESKLRAGTTIFFTLNK 487 >gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 663 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 62/220 (28%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + I H++++P+ + L + + ++ S L + + Sbjct: 438 ATISHELLTPLTYVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLDMINDILDLSQI 497 Query: 77 VDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKIL 119 L E ++E +++ +I+ Sbjct: 498 QAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQII 557 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNVES 174 NL A P+GG VT+ N IF ++ G + Q VD + Sbjct: 558 WNLLTNAIKFTPQGGNVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHR 617 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + ++ R+ E + + + Sbjct: 618 PYEGTGIGLALTKQIVELHRGRIEVESTVGVGSIFTVWIP 657 >gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1197 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52 + + + H+ +P+ + LE ++ I + Sbjct: 535 RQQAERLMELDRQKTEFFQNVSHEFRTPLTLMIGPLESAINQHQGLPYEQSSIALRNSRR 594 Query: 53 IRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 + + + M+ +F ++ + + + + + ++ QV E Sbjct: 595 LLRLVNQLLDLQRLDAGRMQPSFRPCNLIEFIHQIVETFKPYCEKKNINLLSQVIPCPEI 654 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165 + K+L NL A GG +TI+V+ + N+ + G + Sbjct: 655 YLDIEKFDKVLYNLLSNAMKFTNAGGSITIAVKSTDNKVCLKISDTGIGISKEQLPHLFE 714 Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +G+V + + + V L + + + L+ Sbjct: 715 RFRQAEGSVNRSYEGSGLGLALVKELVELHGGEIDVSSEQGKGTTFTIHLQ 765 >gi|167768424|ref|ZP_02440477.1| hypothetical protein CLOSS21_02983 [Clostridium sp. SS2/1] gi|167709948|gb|EDS20527.1| hypothetical protein CLOSS21_02983 [Clostridium sp. SS2/1] Length = 495 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59 + +I + L S I HD+ +PI AI +E + + E M + + Sbjct: 250 LKDSIDARIVYEKQNRDLISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTVYN 309 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKIDLSRERA- 116 + + +DS I + E++ + D + + S Sbjct: 310 KANDMNVLINELSLYSKIDSNIIPYNFEKININSYFKDCVDEIGADLEQRGMMFSYRNYC 369 Query: 117 --------------KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161 +++ N+ A + + + ++K NG Sbjct: 370 AANVMVTADPEQLKRVINNIINNACKYNNKAKGKVGITLTEYDRKVQVAIKDNGIGISKE 429 Query: 162 EKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E+ + E + L K Sbjct: 430 DLPHIFRRTYRADMSRNSAGGSGLGLSICKKIIEEHGGEIWAESKLRAGTTIFFTLNK 487 >gi|158422968|ref|YP_001524260.1| sensor protein [Azorhizobium caulinodans ORS 571] gi|158329857|dbj|BAF87342.1| sensor protein [Azorhizobium caulinodans ORS 571] Length = 1720 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE----DEVM 50 + + + L A+ + I H+I P+ + E L+ + + + Sbjct: 1482 LREARSELAQANQLTAMGSFATSIAHEINQPLATLVAHAEAGLRWLNRPEPDLGEVTKSL 1541 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 Q I + A + +R D L + I + + +S Sbjct: 1542 QSISQAGRRAADIITALRALVKQAPAPLTLVTIEDVLDEVLKIVCADLKTNGIQLSLALS 1601 Query: 104 WTGEKI-DLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLA 158 I + + ++L NL A ++ + IS ++ +++ G Sbjct: 1602 TERHAILVNNIQLQQVLFNLITNAVQAMANAATPERHLRISTAIVQDNVEVTIEDTGCGM 1661 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + L I+ + Sbjct: 1662 -SQEVIARIFQPFFTTKTTGMGVGLAICRSIMERHGGTLEARSIEGKGSTFFVRIP 1716 >gi|148271650|ref|YP_001221211.1| putative two-component sensor histidine kinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829580|emb|CAN00495.1| putative two-component sensor histidine kinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 566 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 65/218 (29%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRL 69 + + H++ +P+ +I +EL+ + ED+ + ++ ++ + + + Sbjct: 338 FVASVSHELKTPLTSILGYVELIADDLEEDDLDDRITAARLAIVERNAQRLLGLIGDLLT 397 Query: 70 AFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121 A + VD + + VI V E++ + ++L N Sbjct: 398 AAQHKLAVNRNLVDVGEIVENALDVIRPHAQASGVTLVEPDYEELVAEVDAVRIGQVLDN 457 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STI 176 L A P GG V V + + +G + ST+ Sbjct: 458 LLSNAVKYTPEGGTVITEVGVDGDHFRLCVTDDGVGMSAEDTSQLFTRFFRTNSARASTV 517 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 518 AGVGLGLSITRSIVEAHDGSIEVESAVGTGTTMRVRLP 555 >gi|148258553|ref|YP_001243138.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146410726|gb|ABQ39232.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 605 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 66/247 (26%), Gaps = 36/247 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + + ++++ + + H++ +P+ ++ +++E L ++ +I Sbjct: 360 MTDALYNRIEAIEM---FAADVAHELKNPLTSLRSAVETLPLARNDNSRGRLLAVIEHDV 416 Query: 58 MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQ 101 + + VD L + V + + Sbjct: 417 KRLDRLISDISDASRLDAELQRQDMTLVDLRRLLTTLTSVANETKLGTDVAVEVRFEGRG 476 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + T +++ NL A + GGKV I+ + ++E + +G R Sbjct: 477 TNDTFSVPGHDSRLGQVISNLLSNAQSFSTAGGKVRITCRRVRSEIEILVDDDGPGIRED 536 Query: 162 EKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNV 207 + + + + R+ E Sbjct: 537 ALQRIFERFYTDRPHQGFGQNSGLGLSISKQIIDAHGGRIWAENRPGPVDADGNPTVAGA 596 Query: 208 VLSALLE 214 L Sbjct: 597 RFIVRLP 603 >gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response regulator, SSF and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1323 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 28/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57 AK + L S + H++ +P+ AI ++L + + ++++R Sbjct: 854 AKERAEVANQAKSAFL--SSMSHELRTPLNAILGYAQILKRQDNLTDAQRQQLEIVRGCG 911 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------W 104 + + + L L + + +V+ Sbjct: 912 EHLLSLINDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNRL 971 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARF--- 160 R+ +ILLNL A RG S + G Sbjct: 972 PRAVRGDQRKLKQILLNLLSNAVKYTHRGCVTVRVRYHSSTGVFACEITDTGTGIPRDKL 1031 Query: 161 ---PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F Q+ DG + + L ++ E L Sbjct: 1032 GIIFEPFVQLADGGQIR--EGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELP 1086 >gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 919 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 61/240 (25%), Gaps = 27/240 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 + ++ + + + H+I +P+ A+ L + ++ + + S+ Sbjct: 425 LRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTELDRKQRGYLEKIGSSS 484 Query: 61 IIRLKF----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 L + V I + E I R+ Sbjct: 485 RTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQSKAQEKGIEFRVRLAPDL 544 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARF 160 + + ++L NL A +G + ++ + F ++ G Sbjct: 545 PNKLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRREEEEVVVHFCVQDTGIGI-A 603 Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE+ +I + L L E + S + Sbjct: 604 PEQMGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGELQVESVPGSGSSFSFTVP 663 >gi|170720229|ref|YP_001747917.1| histidine kinase [Pseudomonas putida W619] gi|169758232|gb|ACA71548.1| histidine kinase [Pseudomonas putida W619] Length = 585 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 68/235 (28%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52 + + S L AL + + + H+I P+ LE L ++ Sbjct: 347 LRTAQEGLVQSAKLAALGQMSAAMAHEINQPLTTQRMQLETLRLLLDHGRYDEARAALEP 406 Query: 53 IRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104 + ++ + +D + + V+ + ++ Sbjct: 407 LEQMLTRMAALTSHLKTFARNSPVGLRERLDLATVVDQALHLLDTRIRSDEVEVALYLAR 466 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS--LKINGNLARFPE 162 + ++L+NL A ++ + ++ + + + +G + Sbjct: 467 PAWVRGDAIRLEQVLINLLRNALDAMADKRYKRLEIRIEPEHDQWRLSVLDSGGGIAETD 526 Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ D + + + + HE +L E + LS L + Sbjct: 527 L-ARVFDPFFTTKPVGEGLGLGLAISYGIIHEAGGQLQAENLPG-GARLSLTLPR 579 >gi|83643227|ref|YP_431662.1| signal transduction histidine kinase regulating C4-dicarboxylate transport system [Hahella chejuensis KCTC 2396] gi|83631270|gb|ABC27237.1| Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Hahella chejuensis KCTC 2396] Length = 655 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 62/231 (26%), Gaps = 21/231 (9%) Query: 4 NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR--- 54 + + L L + I H++ P+ A+ + ++ E + L Sbjct: 401 TQDELIQAAKLALLGQLSAGINHELNQPLTALRTYAQNAQAFIERNMPEKAQLNLREIVG 460 Query: 55 ---LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107 + F R +G V + ++ E + Sbjct: 461 LTDHMASIIGQLKIFARKEANVSGPVHVNSCIDAALKITEPELRRAHVNWRVDAAADDIY 520 Query: 108 KIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 ++L+NL A ++ + ++ I + +++ ++ G+ Sbjct: 521 VQGDMVRLEQVLINLITNALHAMSGSQEKQLRIQCLNLEDKVRIQVRDTGSGI-PEHVMQ 579 Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + K L ++ + L Sbjct: 580 HIFEPFYTTKNRGQGLGLGLSISYRIIESMKGELRAANNEEGGALFMIELP 630 >gi|116669288|ref|YP_830221.1| histidine kinase [Arthrobacter sp. FB24] gi|116609397|gb|ABK02121.1| histidine kinase [Arthrobacter sp. FB24] Length = 406 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56 +A + + ++ + + H++ +P+GAI E L+ + + ++ Sbjct: 135 LADDRTEITRTEEIRNDFVANVSHELKTPVGAISLLAEALESSADDEEAVRRFAKRMQKE 194 Query: 57 SMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 S ++ + VD + + + V Sbjct: 195 STRLAALVQDIIELSRLQGANVAQQGHPVDINSVITEAVDRSQLPAESKNISIVVGGHVD 254 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + ++ ++ L A P +V I V+ + S+ G+ PE Sbjct: 255 AKVYGDQDLLVTALRNLIDNAIRYSPENTRVGIGVRAKEGLISISVTDQGDGL-SPEDQE 313 Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + V + + + + L Sbjct: 314 RVFERFYRVDAARSRQTGGTGLGLSIVKHVISNHGGEVTLWSQPGQGSTFTIRLP 368 >gi|329934373|ref|ZP_08284452.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] gi|329305969|gb|EGG49824.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] Length = 478 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 68/231 (29%), Gaps = 18/231 (7%) Query: 3 KNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----------VM 50 + L +M+ A + + H++ +P+ A+ LLD+ V Sbjct: 245 QEDAATLRAMEARARRFAADVSHELRTPLAAMTAVTGLLDDDAAAGHLGPETSEAITLVA 304 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EK 108 R + ++ R G I LG++ RV V G Sbjct: 305 DETRKLAHLVEDLMEISRFDAGAARLDLDEIDLGELLHKTLALRHWQDRVTVDVPGGLRA 364 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165 R +L NL A G +V I + + + ++ NG P F Sbjct: 365 RLDPRRIDVVLANLTGNALRHGGPGARVRIRARTEADRLVLTVHDNGPGIAEDMLPHVFD 424 Query: 166 QIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + G+ + + A + L + V + L + Sbjct: 425 RFTKGDTARTRSEGSGLGLAIAAENARLHGGTLTAANSTEGGAVFTLTLPR 475 >gi|320353834|ref|YP_004195173.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320122336|gb|ADW17882.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 704 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 65/231 (28%), Gaps = 19/231 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57 + + L + + L + I H+I +P+ +I+ +++LL + ++ + Sbjct: 461 TEELIRRLDRLTSLGQLSAGIAHEIRNPLASIYFNVQLLAKKLPAADPTLALINDTQKGI 520 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112 +K M + L + + + V + + + Sbjct: 521 NRIRALVKGMLDFAKPSLPSLKSGSLERVLRESIGLMDSQLKKQRIEVALQVEKDLPPVV 580 Query: 113 RERAKILLNLFMVAHASLPRGG---------KVTISVQDSKNENIFSLKINGNLARFPEK 163 + +I + + ++ + + + +G PE Sbjct: 581 FDAHQIQQVVVNLLLNAMEAMPGGGRVDLVARDERGTDRPGGQVVLLCTDHGPGI-PPEN 639 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + D + V + +++ + + Sbjct: 640 LGKIFNPFFTTKADGTGLGLSIVHKILEQHQATVDVISREGSGTTFMIQFP 690 >gi|309779206|ref|ZP_07673969.1| sensory box sensor histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] gi|308922010|gb|EFP67644.1| sensory box sensor histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] Length = 795 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 65/245 (26%), Gaps = 31/245 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54 + + + + AL L + HD + + + +LELL+ E + Sbjct: 263 LEQTQRALFQAQKMEALGKLTGGVAHDFNNVLQVLRGNLELLESRHGRDAWSAERLNNAI 322 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GE 107 + + +I + ++D + + Sbjct: 323 DAVDRGAKLAAQLLAFGRKQPLAPVVINPAHQLRAMDDLLRRALGEAIEIESVVAGGLWN 382 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLK 152 + ++LNL + A ++P GGK + + + + ++ Sbjct: 383 TAVDPHQFENVILNLAINARDAMPDGGKLTLELSNATLDDDYVMALPDVPAGQYVMLAVT 442 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 G PE + D + + + ++ + + Sbjct: 443 DTGTGM-SPEVMERAFDPFFSTKREGEGTGLGLSMAYGFVKQSGGHIRLYSEVGEGTTVR 501 Query: 211 ALLEK 215 L + Sbjct: 502 VYLPR 506 >gi|302387279|ref|YP_003823101.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] gi|302197907|gb|ADL05478.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] Length = 506 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/239 (9%), Positives = 64/239 (26%), Gaps = 26/239 (10%) Query: 2 AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELL--------------DE 42 LS ++ + L I HD+ +P+ I + E+L ++ Sbjct: 260 RSAQERILSKEEIAQERYRSNLLRAISHDLRTPLSGIMGTSEMLMGMTDQEDGRYALAED 319 Query: 43 VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102 + + + + + + + + +V+ +I + + Sbjct: 320 IYKDADWLHSLVENILGLTRLQDSRLVLNKQMEAVEEVISVAVMAIGKRAPEREIAVHIP 379 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARF 160 ++ ++L+NL A P G++ T+ + +F++ G Sbjct: 380 DSVMLVPMDAKLIDQVLVNLLDNAVKHTPPEGEISVTVIENKEEEAAVFTVADRGMGIAP 439 Query: 161 PEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + L Sbjct: 440 VDLSHVFQMFYTTHEKGADSQRGVGLGLAICESIVKAHGGTISAQNRRGGGAEFTFTLP 498 >gi|226940498|ref|YP_002795572.1| KdpD [Laribacter hongkongensis HLHK9] gi|226715425|gb|ACO74563.1| KdpD [Laribacter hongkongensis HLHK9] Length = 877 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 15/228 (6%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ ++ + L S + HD+ +PI AI L++ + +L A Sbjct: 640 AQDALVSMEGERMRNTLLSAVSHDLRTPITAIAGLAGTLEKKLADPAQQELAHAIHGEAT 699 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDL 111 + + + L Q + VQV+ E L Sbjct: 700 QMNRLVSNLLDMARLQSGGVKLRLDWQSLEEVVGSALGQLRPVLARHPVQVALPAELPLL 759 Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--KFTQ 166 + ++L+NL A P G + IS + + G P F Sbjct: 760 EFDALLIERVLVNLLDNAAKYTPVGSGIRISARLDNGWLRLRVDDEGPGLPEPAESLFQP 819 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V G ES + L+ + + E + L Sbjct: 820 FVRGVRESATSGAGLGLALCRLIVEAHGGTIATENRHEGGARFVVALP 867 >gi|187778165|ref|ZP_02994638.1| hypothetical protein CLOSPO_01757 [Clostridium sporogenes ATCC 15579] gi|187775093|gb|EDU38895.1| hypothetical protein CLOSPO_01757 [Clostridium sporogenes ATCC 15579] Length = 454 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 23/238 (9%) Query: 1 MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54 + +++ + L L S I H+I +P+ + N+LE + + + +E + + Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272 Query: 55 LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101 + L + + F + + + I + ++ Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFKKIFLDELIADICSDFYAIAENKNIKLQYHME 332 Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ +NL A GG+V I + S + + +K NG + Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKKIVVEVKDNGVGIKKE 392 Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + F ++ G+ + + I V + + + E + K Sbjct: 393 DLPFIFERLYRGDKSRHQFEGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKIYFHK 450 >gi|170023402|ref|YP_001719907.1| sensor protein KdpD [Yersinia pseudotuberculosis YPIII] gi|169749936|gb|ACA67454.1| osmosensitive K+ channel signal transduction histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 908 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 1 MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48 +A++ L L + + HD+ +P+ + E+L ++ Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105 + Q + ++ L R+ G L +I + + +++V Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALHMLETTLSQHQIRVELP 768 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + ++ + ++ +NL AH + I + + NG + Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVKGEWLNVDVWDNGPGVTIGQ 828 Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + GN ES I + + + R+ E + +L Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883 >gi|197117185|ref|YP_002137612.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086545|gb|ACH37816.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 871 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 70/242 (28%), Gaps = 31/242 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58 + ++ ++ + +L I HD + + AI + EL +D+ + +Q I +S Sbjct: 493 ERQLLHMQKLESLGVLAGGIAHDFNNILMAIMGNAELALMRIDKDSPAVDNLQKIEQAST 552 Query: 59 SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 A + M G+ D L ++ ++E ++ V++ + + + Sbjct: 553 RAADLARQMLAYSGKGRFVVGNTDLNRLLQEMLHMLELSVSKSAIVRLDLHPSLLQIEAD 612 Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152 +I + + + + + Sbjct: 613 ATQIRQVVMNLVINASEALGDGRGFISIKTLSLKCDRSYLKKAWLDVDVPEGDYVCLEVT 672 Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 G + +I D + + + + ++ ++ E + L Sbjct: 673 DTGCGMDSATRS-KIFDPFFTTKFTGRGLGMAATLGIVRGHRGAIIVESEPNQGSCFRVL 731 Query: 213 LE 214 Sbjct: 732 FP 733 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] gi|133738736|emb|CAL61783.1| Sensor protein KdpD [Herminiimonas arsenicoxydans] Length = 921 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 18/231 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLS 56 A++ + S L L S + HD+ +P+ ++ E L + E+ Q + Sbjct: 672 AQDALVRMESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDE 731 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114 + + + + + + ++ K L+ + Sbjct: 732 ARRMSNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLP 791 Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163 ++L NL A P G ++ I+ + S S+ NG + Sbjct: 792 LVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEEAI 851 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + G ES + + ++ + D ++ L Sbjct: 852 FDKFTRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 >gi|160877441|ref|YP_001556757.1| osmolarity sensor protein [Shewanella baltica OS195] gi|160862963|gb|ABX51497.1| integral membrane sensor signal transduction histidine kinase [Shewanella baltica OS195] Length = 429 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 10/219 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58 MA ++ ALL + I HD+ +P+ I + E++ ++ ++D ++ I Sbjct: 214 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 270 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + ++R + + + L E A + V ++ E + ++ Sbjct: 271 IISQFIAYIRQDQETSRELGQINKLIQDVAQAEANRAGEIEVVLTDCPEAQFQAIAIKRV 330 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175 L NL A G + IS Q F+++ NG + F G++ Sbjct: 331 LSNLVENAFRYGS--GWIRISSQFDGKRIGFTVEDNGPGIDESQITKLFQPFTQGDIARG 388 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ + + L Sbjct: 389 SVGSGLGLAIIKRIIDRHQGQVTLSNRAEGGLRAQVWLP 427 >gi|55377815|ref|YP_135665.1| HTR-like protein [Haloarcula marismortui ATCC 43049] gi|55230540|gb|AAV45959.1| HTR-like protein [Haloarcula marismortui ATCC 43049] Length = 644 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 49/216 (22%), Gaps = 8/216 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55 + + + L S + HD+ +P+ L LL+ +Q Sbjct: 418 LQRKRKLERQNERL-DQFASIVAHDLRNPLNVASGRLSLLERDVDASHDASINAIQEQLE 476 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S I + + D + + + V T + Sbjct: 477 RMESIIDDSPTLARSGETVTETDEVDLEMIAYDAWQSVETGGATLVVKTTLQLDGDRNRL 536 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + NLF + F ++ G E+ + + + Sbjct: 537 RNLFENLFRNSVEHNESTDLTVEVGSLPDG-VGFYVEDTGTGIPNQER-DAVFEQGYTTN 594 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + V + + + + Sbjct: 595 TEGTGFGLAIVKDIVQAHGWEISVTEAESGGARFVV 630 >gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2] gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719] gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719] Length = 651 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + + + H++ +P+ + L+LL+ E + L++ S Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312 Query: 62 IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 LK + ++ + G +++ Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 E +IL+NL A ++ ++ +G Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D ++ + LA L E + + + Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491 >gi|332163325|ref|YP_004299902.1| osmolarity sensor protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667555|gb|ADZ44199.1| osmolarity sensor protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862978|emb|CBX73111.1| osmolarity sensor protein envZ [Yersinia enterocolitica W22703] Length = 450 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%) Query: 2 AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54 + + + L+A LL + + HD+ +P+ I + E++ E E + Sbjct: 217 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 276 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 +++ T D LG++ + V + Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVMVDIHPLS 336 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 + L N+ + A KV+ + F ++ +G + + F V G+ Sbjct: 337 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 394 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + L + + + A + Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 437 >gi|300718777|ref|YP_003743580.1| Osmolarity sensor protein [Erwinia billingiae Eb661] gi|299064613|emb|CAX61733.1| Osmolarity sensor protein [Erwinia billingiae Eb661] Length = 450 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ + E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSQEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + ++ + + N+ + A Sbjct: 295 QFERADLNGVLGEVVAAESGYEREIENEVMTSELMVDINPLSIKRAVANMVVNAARYGNG 354 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189 KV+ + F ++ +G R F V G+ + + V + Sbjct: 355 WIKVSSGSELQ--RAWFQVEDDGPGIRPDQLKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 ++ L D + + A L Sbjct: 413 IDAHQGSLEIGDSDRGGLRIRAYLP 437 >gi|294637120|ref|ZP_06715431.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685] gi|291089691|gb|EFE22252.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685] Length = 999 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 67/221 (30%), Gaps = 24/221 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++ + + H++ +P+ I +L+LL + +EV +L+ S S+ + LK + ++ Sbjct: 513 SMFLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSK 572 Query: 76 SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119 + + V + I ++ E ++L Sbjct: 573 IESEQLKIEPGRFVAREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPAEISGDIMRIQQVL 632 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173 NL A G + + + + F ++ G + ++ D + Sbjct: 633 SNLLSNAIKFTDT-GCIILQARVNDFYLEFRIRDTGMGIPARDVL-RLFDPFFQVGSGVQ 690 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + E + + L Sbjct: 691 RHFHGTGLGLAICEKLVSLMDGDIAVESEPGLGSIFTIRLP 731 >gi|257142328|ref|ZP_05590590.1| sensory box histidine kinase [Burkholderia thailandensis E264] Length = 709 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58 + + + ++ A + S HD+ P+ A+ L+LL + Sbjct: 475 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 531 Query: 59 --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 + + D+ + + E + ++ S D Sbjct: 532 ATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQITHDRLPIVH 591 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167 +++L + ++ K I+ + +F ++ NG P+ F +I Sbjct: 592 GIAAQLVLLFQNLIGNAIKFRSKERIARIHLEADTRDDAWVFRVRDNGIGI-DPQYFERI 650 Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + R+ E S L + Sbjct: 651 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIAVESEPGRGTTFSFALSR 702 >gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 932 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 27/237 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A++ + + + + H+I +PI +I LL + + + + ++A Sbjct: 328 ARDEADKANRAK--SEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREYVENIGLAAK 385 Query: 62 IRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L + ++ D L L I + ++ R++V Sbjct: 386 NLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVP 445 Query: 108 KI--DLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161 + ++++NL + + FS+ G Sbjct: 446 RFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDE 505 Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 +K D + + L K + E S L Sbjct: 506 QKKLLFQVFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562 >gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1002 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 19/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%) Query: 3 KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60 + ++ +L + +++ H++ +P+ AI +++ + + + + + + + S Sbjct: 517 EEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRDSSLSSQQQEYLGIINRSG 576 Query: 61 IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104 L + L + + + ++ + ++ V Sbjct: 577 EHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEEL 636 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158 + +I++NL A G + + +K G Sbjct: 637 PKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQLEVKDTGIGI 696 Query: 159 RFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E T + + A + + + ++ Sbjct: 697 NQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLGQGSTFTCTIK 756 >gi|188583109|ref|YP_001926554.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179346607|gb|ACB82019.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 512 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 68/243 (27%), Gaps = 31/243 (12%) Query: 2 AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED 47 + L + L A+ + + + H++ P+GAI N LL + G + Sbjct: 264 QQRTEARLQELQSELGHVSRLSAMGEMATTLAHELNQPLGAISNYTNGCRRLLTQPGPDT 323 Query: 48 EVM---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFI 94 + + +F+ + + + + + Sbjct: 324 IARAREVLDKASEQALRARQIISRLREFVDRGETEKRAEPVAEMIEEAGALTLAGAGEQG 383 Query: 95 AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSL 151 + V G + + ++L+NL A ++ G + ++ + + + ++ Sbjct: 384 VTARIVPDRGIGSVLADRVQIQQVLINLMRNALEAMQGGRRRELTVAARRVAPDWTEIAV 443 Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 G ++ V + + + + RL E Sbjct: 444 SDTGPGI-AEAVADRLFQPFVTTKDGGMGVGLSICRTIVEAHGGRLWVERNAAGGATFRL 502 Query: 212 LLE 214 L Sbjct: 503 TLP 505 >gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 738 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 29/239 (12%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 AK S + + + H+I SP+ I +L++ + DE + + + S+ Sbjct: 250 AKEQAEAASRAK--SEFLANMSHEIRSPMNGIMGMAQLMEYTELTDEQREYLNVIRSSSH 307 Query: 62 IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + + + I + Q+ + + + + + Sbjct: 308 GLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLSQIHDKGLTIRTDIPAAAP 367 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161 I +ILLNL A R +D + + G Sbjct: 368 DTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDERVRLRIDVTDTGIGI-PT 426 Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +I + LA ++ E + S L Sbjct: 427 DAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKITVESREGSGSTFSVHLP 485 >gi|53803076|ref|YP_115241.1| nitrogen regulation protein NtrY [Methylococcus capsulatus str. Bath] gi|53756837|gb|AAU91128.1| putative nitrogen regulation protein NtrY [Methylococcus capsulatus str. Bath] Length = 734 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 24/235 (10%) Query: 3 KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53 +++ + + A + R+ H+I +P+ I S E L + + + + Sbjct: 482 EDVTALILAQRQAAWSEVARRLAHEIKNPLTPIQLSAERLHHKLASRLDERDAEILDRST 541 Query: 54 RLSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 R + Y + E V ++ Sbjct: 542 RTIVHQVEALKAMVNAFAEYARSSTIQLRRVALAEIVEEVVALYPPQSGMSFEIDEEPSL 601 Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISV------QDSKNENIFSLKINGNLAR 159 +S + ++ L + +L + + + +++ NG Sbjct: 602 PRISGDPLQLRQVLHNLIKNSQEALTPSTQGKMCFILRKTVDQGEAFVQLTVRDNGPGI- 660 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E+ +I + V + + V + E+ + E Sbjct: 661 PKEQADRIFEPYVTTKTKGTGLGLAIVKKIIEEHGGTIRVENGLRQGAGFIIRFP 715 >gi|323700432|ref|ZP_08112344.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323460364|gb|EGB16229.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 570 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRL----- 55 + + L ++ L + I H+I +P+ + ++ L E G+ + Sbjct: 325 EQVIEAGKLASVGELAAGIAHEINNPVAIMVEEAGWIQDLLEEGLSKSDNEREVQRALNQ 384 Query: 56 -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104 L F R S D + +I ++ V Sbjct: 385 IRTQGARCKEITHKLLSFARKIDPTVMSFDLNELVREIAELSAQRAKYANVVIETSLGDN 444 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163 E ++ LNL A ++ GG + IS + + + + G+ Sbjct: 445 IAPIKASPSEMQQVFLNLVNNAIDAMDPGGGNLDISTRQEGDTVLTLVSDTGSGIPEANL 504 Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + + ++ + + + + Sbjct: 505 S-RIFDPFFTTKPVGKGTGLGLSIIYGIVNKMGGTISVDSAVGRGTTFTISMP 556 >gi|298248980|ref|ZP_06972784.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546984|gb|EFH80851.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 981 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA--- 70 S H++ +P+ A+ +L+ + + + S + + Sbjct: 762 SMASHELRNPLAAVKMQTQLVQKRLERQSHHEAATALSRVEGSVKQLERLIGELLDVSKI 821 Query: 71 -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILLNLFM 124 VD L ++ ++ V + + ++ NL Sbjct: 822 QAGRLEYQQEMVDLDALLHEVADTMQQIHTTHTIVVRGTAPCSLVGDKDRLGQVFTNLIS 881 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDS 178 A P V + + S ++ +G E+ +I D + I Sbjct: 882 NAIKYSPGAETVEMDLSTSAETVTIRVRDHGLGI-PREQRDKIFDRFYRVTDPKQRAIPG 940 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + Y V + + + E + L K Sbjct: 941 LGMGLYIVAEIVKSHGGTITVESQVGTGSTFTVTLPK 977 >gi|226355986|ref|YP_002785726.1| histidine kinase [Deinococcus deserti VCD115] gi|226317976|gb|ACO45972.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115] Length = 413 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 54/220 (24%), Gaps = 8/220 (3%) Query: 2 AKNICFNLSSMDLV-AL-----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 ++ + + L AL + H++ +P+ A+H L + + + + Sbjct: 188 RQSQRLEVQAKQLEEALNMQKTFLAETSHELRTPLTALHGYLRRAEREVGGSQTLLDAQR 247 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + + + + ++ V+ + E + Sbjct: 248 VAENMTRLVNDLLQLSRGELVQSIEMHFMNLGNVLRQVGRDFGVRAPEESPEIVGDPGRL 307 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +NL A V + V E + G +I D Sbjct: 308 TQVFMNLVTNAVRVSGSPDLVHMEVAHRPGEVEVRVVDRGPGV-PDPIKPRIFDKFYRGK 366 Query: 176 IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + L Sbjct: 367 EAGSAGLGLTIAQQVVVAHGGSIDVIDTPGGGATFRVRLP 406 >gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 651 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 A+ + + + + H++ +P+ + L+LL+ E + L++ S Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312 Query: 62 IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105 LK + ++ + G +++ Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372 Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160 E +IL+NL A ++ ++ +G Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432 Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D ++ + LA L E + + + Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491 >gi|253699663|ref|YP_003020852.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774513|gb|ACT17094.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1040 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 66/240 (27%), Gaps = 33/240 (13%) Query: 7 FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII- 62 L + L +L L I HD + + I + L L + + + ++ +A+ Sbjct: 663 QLLHAQKLESLGILAGGIAHDFNNILTGILGNSSLGLMRIDPDSPAAENLQNIEKAAVRA 722 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 L + V+ + L ++ ++E ++ +++S E + + Sbjct: 723 ADLAKQMLAYSGKGMFVVEPVNLNLLLEEMIHLLEVSVSKKAELKLSLAQELPPVQADPT 782 Query: 117 KILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLKIN 154 ++ + + + + Sbjct: 783 QLRQIVMNLVINASEAIGEEGGSITIGTGYRHFDQSYLKEAWFDCELVEGEFVFLQVADT 842 Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + +I D + + V+ + +K + + + LL Sbjct: 843 GCGMDESTRS-RIFDPFFTTKFTGRGLGMSAVLGIIRGHKGAIKVQSKPGEGTTFTVLLP 901 >gi|168231939|ref|ZP_02656997.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472641|ref|ZP_03078625.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459005|gb|EDX47844.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333733|gb|EDZ20497.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 778 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S I H++ +P+ I +L + + E + ++ +SA+ Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTVEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347 Query: 80 LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123 + L + F+A + + + + I +IL NL Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177 A +G + D + F ++ +G E+ Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 I LA + + + Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502 >gi|241663307|ref|YP_002981667.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia pickettii 12D] gi|240865334|gb|ACS62995.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia pickettii 12D] Length = 442 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 21/217 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM------ 67 + + H++ +P+ + LE + + + + ++ +M ++ + Sbjct: 210 FVANVSHELKTPLTVLSGFLETVRDIPLPEEDKRRYLDMMHTQAMRMQHLVEDLLALATL 269 Query: 68 ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + ++ + + E NL Sbjct: 270 EGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRHTVSMTCDPGVSVCGAELELLSAFSNLA 329 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177 A P GG + + ++S+ G PE ++ + Sbjct: 330 SNAVRYTPDGGSIRLDWGVRDGHAVYSVTDTGIGI-APEHIPRLTERFYRVDRSRSRDTG 388 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + L A+ Sbjct: 389 GTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425 >gi|88608550|ref|YP_505906.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama] gi|88600719|gb|ABD46187.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama] Length = 447 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 21/232 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60 AK +SS + + + H++ +P+ AI +L+ + E + S Sbjct: 211 AKESIEEISSQK--SQFLANVSHELKTPLNAIIGFSDLIRTAEVLGTEHREYANDIYYSG 268 Query: 61 IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108 + D + ++ K V+ ++ + Sbjct: 269 NHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKEIKIVKSFFSNKIL 328 Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +++LN+ + G + IS+ +E + NG + + Sbjct: 329 IKSDHKRVKQVILNILSNSIKFTNEDGLIRISIIRLPSEIEIEISDNGVGIPEKDIAKAL 388 Query: 168 VDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D I L E + V+ L Sbjct: 389 SVFGQSNTELSRKYDGAGIGLPLSKKLVELMGGVFEIESKEGSGTVVKIRLP 440 >gi|329896809|ref|ZP_08271725.1| two-component system sensory histidine kinase [gamma proteobacterium IMCC3088] gi|328921564|gb|EGG28944.1| two-component system sensory histidine kinase [gamma proteobacterium IMCC3088] Length = 508 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 64/241 (26%), Gaps = 29/241 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAK + ++ + + + H++ +P+ AI E++ E + E + +L Sbjct: 260 MAKEQADSANAAK--STFLANVSHELRTPLNAIIGYSEMIQEEVNDGEAINKDQLQEDLT 317 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED------------------FIAVDKRVQV 102 I +L +D + + + Sbjct: 318 KIVFSGRQLLTLINDVLDLAKIETGKMTIHPESFDPIATLHTVADSMAPLLNTQGNEMCW 377 Query: 103 SWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLA 158 G + + +I+ NL A+ G + + DS+ + ++ G Sbjct: 378 DIQGPLPCIHTDATKFRQIVTNLLSNANKFTEAGSITIRAGITDSQEQIWIEVRDTGIGM 437 Query: 159 RFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + + S + AH + + L Sbjct: 438 TDQQLGRIFEAFEQAERSTSSRYGGTGLGLSLCQEFAHMLGGDITASSTPNVGSSFIVTL 497 Query: 214 E 214 Sbjct: 498 P 498 >gi|320326246|gb|EFW82300.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. glycinea str. B076] gi|320330670|gb|EFW86647.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. glycinea str. race 4] gi|330881343|gb|EGH15492.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. glycinea str. race 4] Length = 530 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 19/228 (8%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59 I + L AL L + I H+I +P+GA+ ++ +LL + + +L ++ Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355 Query: 60 AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 + + R +D L + + V V + + Sbjct: 356 SGRIDRVIANVLQLSRRRESQPELLDLKTWLENFVAEFRSAAMAGQSVHVEISPGTLTTR 415 Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164 + ++ + R + + + I ++ +G Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 ++ + + + Y L N+ L L Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522 >gi|320175771|gb|EFW50857.1| Osmolarity sensory histidine kinase EnvZ [Shigella dysenteriae CDC 74-1112] Length = 450 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 LL + + HD+ +P+ I + E++ E E + +++ Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 D LG++ + + + E + + N+ + A Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 G + +S N F ++ +G + F V G+ TI + V + Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + A L Sbjct: 413 VDNHNGMLELGSSERGGLSIRAWLP 437 >gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 577 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 26/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII-----RLKFM 67 + + H++ +P+ AI ++L + E + L+R S + Sbjct: 325 AVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSILDVSR 384 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILL 120 + Y + ++ + + + + + ++L+ Sbjct: 385 IESGVYATEPEPFRFAEAVDMCQS