RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780891|ref|YP_003065304.1| hypothetical protein
CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>gnl|CDD|34947 COG5385, COG5385, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 214

 Score =  187 bits (476), Expect = 2e-48
 Identities = 87/212 (41%), Positives = 137/212 (64%), Gaps = 3/212 (1%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  +    LS  DL ALLCSR+CHDIISP+GAI+N LELLDE G +D+ M LIR S+ +A
Sbjct: 1   MPASPNATLSGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADDDAMDLIRSSARNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RL+F RLAFG +GS  + I  G+ E+  +DF A +++ +++W G +  L + R K+LL
Sbjct: 61  SVRLQFARLAFGASGSAGASIDTGEAEKAAQDFFA-NEKPELTWNGPRAILPKNRVKLLL 119

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSH 179
           NLF++A+ ++PRGG + +++++ + +  FS+   G + R P KF ++  G   E  +D+H
Sbjct: 120 NLFLIAYGAIPRGGSLVVTLENPETDARFSIIAKGRMMRVPPKFLELHSGEPPEEAVDAH 179

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            +Q YY +LLA E  + +      +  +V +A
Sbjct: 180 SVQPYYTLLLAEEAGMTISVHATAE-RIVFTA 210


>gnl|CDD|32387 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
           transduction mechanisms].
          Length = 890

 Score = 28.7 bits (64), Expect = 1.4
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 39/167 (23%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDE--------------VGIEDEVMQLIRL-SSMSA 60
           ALL S I HD+ +P+ AI  + E L                  I +E  +L RL +++  
Sbjct: 662 ALLAS-ISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLD 720

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
           + RL+        +G V+  +    +E+V+       +R++  +TG KI +S        
Sbjct: 721 MTRLQ--------SGGVNLKLDWVLVEEVVG---EALQRLRKRFTGHKIVVSVPVDLPLI 769

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                   ++L+NL   A    P G ++ I+    +   +FS+   G
Sbjct: 770 HVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEG 816


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 27.3 bits (60), Expect = 2.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           I   + S  G ++ ++E+L+  G+ D V+   + S +S 
Sbjct: 472 ILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELST 510


>gnl|CDD|34340 COG4724, COG4724, Endo-beta-N-acetylglucosaminidase D [Carbohydrate
           transport and metabolism].
          Length = 553

 Score = 26.6 bits (58), Expect = 4.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAK 117
           D     K +  +WT E+ DLS    K
Sbjct: 497 DDADAWKELSDNWTNEEFDLSSLAGK 522


>gnl|CDD|36490 KOG1276, KOG1276, KOG1276, Protoporphyrinogen oxidase [Coenzyme
           transport and metabolism].
          Length = 491

 Score = 26.5 bits (58), Expect = 5.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 27  ISPIGAIH-NSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           + P G     +L+L+ ++G+EDE+ Q I +S  +A  R 
Sbjct: 70  LRPAGPGGAETLDLVSDLGLEDEL-QPIDISHPAAKNRF 107


>gnl|CDD|146476 pfam03863, Phage_mat-A, Phage maturation protein. 
          Length = 399

 Score = 26.3 bits (58), Expect = 7.1
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 83  LGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLS 112
             DI+ V EDF+ V  ++          G  + LS
Sbjct: 209 FYDIQGVYEDFMRVHDKIAKPLRFSRGHGTNVKLS 243


>gnl|CDD|163625 cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and related
           proteins, metallophosphatase domain.  DR1281 is an
           uncharacterized Deinococcus radiodurans protein with a
           domain that belongs to the metallophosphatase (MPP)
           superfamily.  MPPs are functionally diverse, but all
           share a conserved domain with an active site consisting
           of two metal ions (usually manganese, iron, or zinc)
           coordinated with octahedral geometry by a cage of
           histidine, aspartate, and asparagine residues. The MPP
           superfamily includes: Mre11/SbcD-like exonucleases,
           Dbr1-like RNA lariat debranching enzymes, YfcE-like
           phosphodiesterases, purple acid phosphatases (PAPs),
           YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets. This domain is thought to allow for
           productive metal coordination.
          Length = 255

 Score = 25.9 bits (58), Expect = 8.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI 94
           G TG  DS+IG    E VIE F+
Sbjct: 196 GMTGPYDSVIG-MKKEAVIERFL 217


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.140    0.390 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,504,961
Number of extensions: 129336
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 19
Length of query: 215
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,318,927
Effective search space: 539865875
Effective search space used: 539865875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)