RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780891|ref|YP_003065304.1| hypothetical protein
CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
(215 letters)
>2vxt_I Interleukin-18; FAB, IL-18, secreted, cytokine,
autoimmunity, glycoprotein, TH1/TH2 cells,
immunoglobulin domain, immunoglobulin V region; 1.49A
{Homo sapiens} PDB: 1j0s_A 3f62_B (I:)
Length = 157
Score = 34.0 bits (78), Expect = 0.017
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYV 186
S PRG VTISV+ K I +L + F E N I DI F+
Sbjct: 55 SQPRGMAVTISVKAEK---ISTLSAENKIISFKE-------MNPPDNIKDTKSDIIFFQR 104
Query: 187 ILLAHENKIRL 197
+ H+NK++
Sbjct: 105 SVPGHDNKMQF 115
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} (A:1-122)
Length = 122
Score = 28.8 bits (65), Expect = 0.55
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
+ +K N+ LKI
Sbjct: 62 DNFQGDIDIAK--NLAVLKILA 81
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG
folds, immune system; 2.70A {Homo sapiens} (A:)
Length = 126
Score = 27.7 bits (62), Expect = 1.3
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
+ + S ++ N L I+
Sbjct: 66 PRFSGSKDVAR--NRGYLSISE 85
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22
protein, T cell receptor delta, immune system; HET: NAG
MAN FUC; 3.40A {Mus musculus} (F:1-123)
Length = 123
Score = 27.2 bits (61), Expect = 1.6
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
K+ S S + L I
Sbjct: 66 KKMEASKNPSA--STSILTIYS 85
>2or7_A T-cell immunoglobulin and mucin domain- containing protein
2; beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus} (A:)
Length = 115
Score = 27.3 bits (61), Expect = 1.6
Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
+ + S+ SL I
Sbjct: 61 SRYQLKGNISE--GNVSLTIEN 80
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory
receptor, two-domain structure, V-SET, C2-SET, IG-like
domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo
sapiens} PDB: 2zg3_A* 2zg2_A (A:1-124)
Length = 124
Score = 27.4 bits (61), Expect = 1.6
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
G+ + K SL I
Sbjct: 69 GRFRLLGDVQK--KNCSLSIGD 88
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase,
oxidoreductase; HET: FAD; 1.80A {Lechevalieria
aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
(A:63-149,A:208-299)
Length = 179
Score = 27.2 bits (60), Expect = 1.7
Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 16/83 (19%)
Query: 36 SLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDS------- 79
S+EL G+ ++ + + + L T +
Sbjct: 12 SMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDA 71
Query: 80 LIGLGDIEQVIEDFIAVDKRVQV 102
+ + ++ + + R QV
Sbjct: 72 ICPQHWLAPLLAEAVGPRHRTQV 94
>1smo_A Triggering receptor expressed on myeloid cells 1; structure,
activating receptors, TREM-1, innate immune system
receptor; HET: TLA; 1.47A {Homo sapiens} (A:)
Length = 119
Score = 26.9 bits (60), Expect = 2.1
Identities = 1/22 (4%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
G++ + + +++
Sbjct: 63 GRIILEDYHDH--GLLRVRMVN 82
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} (B:1-126)
Length = 126
Score = 26.9 bits (60), Expect = 2.4
Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
GK + + +L I+
Sbjct: 67 GKFEVDRIPET--STSTLTIHN 86
>1j8h_D T-cell receptor alpha chain; protein-protein complex,
immunoglobulin fold, immune system; HET: NAG NDG; 2.40A
{Homo sapiens} (D:1-116)
Length = 116
Score = 26.8 bits (60), Expect = 2.5
Identities = 3/23 (13%), Positives = 5/23 (21%), Gaps = 2/23 (8%)
Query: 133 GGKVTISVQDSKNENIFSLKING 155
+ S+ F L
Sbjct: 59 INGFEAEFKKSE--TSFHLTKPS 79
>3bik_B Programmed cell death protein 1; CO-stimulation,
receptor-ligand complex, immunoglobulin- like
beta-sandwich, T cell, B cell, programmed death; 2.65A
{Mus musculus} (B:)
Length = 134
Score = 26.8 bits (60), Expect = 2.6
Identities = 3/22 (13%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
+ I ++ + F + I
Sbjct: 70 ARFQIIQLPNR--HDFHMNILD 89
>1ktk_E TCR beta chain, T-cell receptor beta chain; streptococcus,
immunity, immune system; 3.00A {Homo sapiens} (E:1-121)
Length = 121
Score = 26.5 bits (59), Expect = 2.6
Identities = 2/22 (9%), Positives = 4/22 (18%), Gaps = 2/22 (9%)
Query: 133 GGKVTISVQDSKNENIFSLKIN 154
K I+ +
Sbjct: 64 KDKFLINHASLT--LSTLTVTS 83
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase;
ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli}
(A:202-358,A:572-619)
Length = 205
Score = 26.4 bits (58), Expect = 2.9
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 33 IHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
+ LL I + +RLS + R+ F
Sbjct: 80 VLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDE 122
>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme,
metallopeptidase, peptidoglycan hydrolase; 1.40A
{Escherichia coli} (A:)
Length = 255
Score = 26.4 bits (58), Expect = 3.0
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT 137
LS + + + + ++ +P GG+
Sbjct: 61 RLSSQVSNLGMGTVLIGDMGMPAGGRFN 88
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity
receptor, immunoglobulin domain; 2.2A {Homo sapiens}
(A:)
Length = 122
Score = 26.2 bits (58), Expect = 3.3
Identities = 3/22 (13%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
+ TI F++ +
Sbjct: 71 SRFTIWDDPDAG--FFTVTMTD 90
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit;
ATP-grAsp, purine biosynthesis, antimicrobial,
ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A
{Escherichia coli} (A:158-355)
Length = 198
Score = 26.4 bits (57), Expect = 3.4
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
G + +++ L + P I Q
Sbjct: 157 KVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQS 195
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin
fold, diabody, immune system; 2.42A {Mus musculus} PDB:
1bwm_A (A:1-115)
Length = 115
Score = 26.0 bits (58), Expect = 3.6
Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 133 GGKVTISVQDSKNENIFSLKIN 154
+ + S+ FSL +
Sbjct: 59 IPDGYKASRPSQ--ENFSLILE 78
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglobulin domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_A 1npu_A (A:)
Length = 117
Score = 26.0 bits (58), Expect = 3.9
Identities = 3/22 (13%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 133 GGKVTISVQDSKNENIFSLKIN 154
+ I ++++ F + I
Sbjct: 59 DARFQIIQLPNRHD--FHMNIL 78
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like
polypeptide 1; immunoglobulin domain, beta sheet,
polymorphism, immune system; 2.00A {Homo sapiens} PDB:
2h3n_A (1:)
Length = 116
Score = 26.0 bits (58), Expect = 4.0
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 134 GKVTISVQDSKNENIFSLKING 155
+ + S ++ N L I+
Sbjct: 64 PRFSGSKDVAR--NRGYLSISE 83
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain
linked with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* (F:)
Length = 250
Score = 26.2 bits (58), Expect = 4.1
Identities = 4/21 (19%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 134 GKVTISVQDSKNENIFSLKIN 154
GK T++ S + ++++
Sbjct: 197 GKATLTADKSS--STAYMQLS 215
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
(A:)
Length = 73
Score = 25.5 bits (56), Expect = 5.1
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
SL G V I + ++ + + NG + FP + + +
Sbjct: 25 SLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQSGPS 71
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus}
(S:84-471,S:604-714)
Length = 499
Score = 25.3 bits (54), Expect = 6.0
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 14 LVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
L + +R+ + + L +LD E+ + D V L+ SS
Sbjct: 354 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFLNDNVTSLLNQSSDK 403
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken
spring-8 center, oxygnase component, 4-
hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus
thermophilus HB8} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A*
2yyj_A* (A:53-137,A:278-457)
Length = 265
Score = 25.5 bits (56), Expect = 6.6
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 21 RICHDII-SPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
I I S + + + + +G + + ++ +++ A R+ RLA+ T S
Sbjct: 182 EILEQIGASGLITLPSEKDFKGPLG--PFLEKFLQGAALEAKERVALFRLAWDMTLS 236
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: FLC; 1.90A {Thermotoga maritima}
(A:213-313)
Length = 101
Score = 25.2 bits (55), Expect = 7.0
Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 31 GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI 90
GA +L+E+G ED V + ++ ++ K + FG+ +++V+
Sbjct: 1 GASEKVPPMLEEIGSEDRVEEFVQ-----KCLKEKRKIMGFGHRVYKTYDPRAVFLKRVL 55
Query: 91 EDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
++ K +++ E+ +S + I N+
Sbjct: 56 QEHFPDSKLFRIASKLEEYIVSNKIKNIYPNV 87
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.30A {Zea mays}
(A:1-115,A:199-249)
Length = 166
Score = 25.2 bits (55), Expect = 7.1
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
G +D+++ LG + V SW + R +I
Sbjct: 106 GMMDTVLNLGFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQI 149
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural genomics consortium, SGC,
alternative initiation ATP-binding; 2.80A {Homo sapiens}
(A:)
Length = 175
Score = 25.1 bits (54), Expect = 7.2
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
S + ++I+ YYV+ ++K + L I
Sbjct: 1 SMLTLNNIRQYYVLCEHRKDKYQALCNIYGSIT 33
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell
WALL biogenesis/degradation, cell cycle, cell shape,
cell division; HET: GPP; 1.8A {Mycobacterium
tuberculosis} PDB: 2vg2_A* 2vg4_A (A:)
Length = 284
Score = 25.1 bits (54), Expect = 7.5
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
+ ++ G+ R + E T + I Y +
Sbjct: 139 KKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCV 181
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.140 0.390
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,564,713
Number of extensions: 68077
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 35
Length of query: 215
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 130
Effective length of database: 2,082,624
Effective search space: 270741120
Effective search space used: 270741120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.1 bits)