RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780891|ref|YP_003065304.1| hypothetical protein
CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>d1j0sa_ b.42.1.2 (A:) Interleukin-18 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 157

 Score = 33.6 bits (77), Expect = 0.014
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYV 186
           S PRG  VTISV+  K   I +L     +  F E        N    I     DI F+  
Sbjct: 55  SQPRGMAVTISVKCEK---ISTLSCENKIISFKE-------MNPPDNIKDTKSDIIFFQR 104

Query: 187 ILLAHENKIRL 197
            +  H+NK++ 
Sbjct: 105 SVPGHDNKMQF 115


>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia
           coli [TaxId: 562]}
          Length = 391

 Score = 27.7 bits (60), Expect = 0.90
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 27/68 (39%)

Query: 26  IISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD 85
           I++       ++    E+        LIRL                         IGL D
Sbjct: 343 ILANQPEHIAAIRPQGEIDFSGT---LIRLH------------------------IGLED 375

Query: 86  IEQVIEDF 93
           ++ +I D 
Sbjct: 376 VDDLIADL 383


>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
           synthase, synthetase domain {Escherichia coli [TaxId:
           562]}
          Length = 297

 Score = 26.3 bits (58), Expect = 1.9
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 33  IHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           +     LL    I   +   +RLS       +   R+ F     
Sbjct: 81  VLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDER 124


>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large
           subunit allosteric, C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 138

 Score = 25.3 bits (55), Expect = 4.7
 Identities = 5/23 (21%), Positives = 13/23 (56%)

Query: 129 SLPRGGKVTISVQDSKNENIFSL 151
           ++ + G+  +SV++   E +  L
Sbjct: 3   TMKKHGRALLSVREGDKERVVDL 25


>d2ex2a1 e.3.1.3 (A:22-477) DD-carboxypeptidase DacB {Escherichia
           coli [TaxId: 562]}
          Length = 456

 Score = 24.8 bits (53), Expect = 5.1
 Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 3/35 (8%)

Query: 128 ASLPRGGKVTISVQD-SKNENIFSLKINGNLARFP 161
             LP G  + + VQ    +        +      P
Sbjct: 7   TQLPAGANLALMVQKVGASAPAID--YHSQQMALP 39


>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 310

 Score = 24.9 bits (54), Expect = 5.9
 Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 96  VDKRVQVSWTGEKI--DLSRERAKILLNLF 123
           ++  +Q+ WTG+++  D++R+    +    
Sbjct: 175 LNPSIQIMWTGDRVISDITRDGISWINERI 204


>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase
           {Thermus thermophilus [TaxId: 274]}
          Length = 421

 Score = 24.4 bits (52), Expect = 6.8
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 29/70 (41%)

Query: 26  IISPIGAIHNSL--ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
            I P    H+ L  E   + G+  E   ++RLS                        +GL
Sbjct: 374 AIHPASTTHSQLSPEEQAQAGVSPE---MVRLS------------------------VGL 406

Query: 84  GDIEQVIEDF 93
             +E +  + 
Sbjct: 407 EHVEDLKAEL 416


>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 380

 Score = 24.4 bits (52), Expect = 7.1
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 29/70 (41%)

Query: 26  IISPIGAIHNSL--ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           I  P    H S+  E+ +  G+ ++   L+R+S                         G+
Sbjct: 329 ISMPCFMSHASIPAEVREARGLTED---LVRIS------------------------AGI 361

Query: 84  GDIEQVIEDF 93
            D++ +I D 
Sbjct: 362 EDVDDLISDL 371


>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
           vaginalis, MGL1 [TaxId: 5722]}
          Length = 394

 Score = 24.5 bits (52), Expect = 7.9
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 29/70 (41%)

Query: 26  IISPIGAIHNSL--ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           I  P    H  +  E  +  GI D    +IRLS                        +G+
Sbjct: 343 IQHPASMTHAVVPKEEREAAGITDG---MIRLS------------------------VGI 375

Query: 84  GDIEQVIEDF 93
            D +++I DF
Sbjct: 376 EDADELIADF 385


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.390 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 786,302
Number of extensions: 36133
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 16
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)