RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] (215 letters) >d1j0sa_ b.42.1.2 (A:) Interleukin-18 {Human (Homo sapiens) [TaxId: 9606]} Length = 157 Score = 33.6 bits (77), Expect = 0.014 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%) Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYV 186 S PRG VTISV+ K I +L + F E N I DI F+ Sbjct: 55 SQPRGMAVTISVKCEK---ISTLSCENKIISFKE-------MNPPDNIKDTKSDIIFFQR 104 Query: 187 ILLAHENKIRL 197 + H+NK++ Sbjct: 105 SVPGHDNKMQF 115 >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391 Score = 27.7 bits (60), Expect = 0.90 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 27/68 (39%) Query: 26 IISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD 85 I++ ++ E+ LIRL IGL D Sbjct: 343 ILANQPEHIAAIRPQGEIDFSGT---LIRLH------------------------IGLED 375 Query: 86 IEQVIEDF 93 ++ +I D Sbjct: 376 VDDLIADL 383 >d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Length = 297 Score = 26.3 bits (58), Expect = 1.9 Identities = 8/44 (18%), Positives = 13/44 (29%) Query: 33 IHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 + LL I + +RLS + R+ F Sbjct: 81 VLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDER 124 >d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 138 Score = 25.3 bits (55), Expect = 4.7 Identities = 5/23 (21%), Positives = 13/23 (56%) Query: 129 SLPRGGKVTISVQDSKNENIFSL 151 ++ + G+ +SV++ E + L Sbjct: 3 TMKKHGRALLSVREGDKERVVDL 25 >d2ex2a1 e.3.1.3 (A:22-477) DD-carboxypeptidase DacB {Escherichia coli [TaxId: 562]} Length = 456 Score = 24.8 bits (53), Expect = 5.1 Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 3/35 (8%) Query: 128 ASLPRGGKVTISVQD-SKNENIFSLKINGNLARFP 161 LP G + + VQ + + P Sbjct: 7 TQLPAGANLALMVQKVGASAPAID--YHSQQMALP 39 >d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 310 Score = 24.9 bits (54), Expect = 5.9 Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Query: 96 VDKRVQVSWTGEKI--DLSRERAKILLNLF 123 ++ +Q+ WTG+++ D++R+ + Sbjct: 175 LNPSIQIMWTGDRVISDITRDGISWINERI 204 >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421 Score = 24.4 bits (52), Expect = 6.8 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 29/70 (41%) Query: 26 IISPIGAIHNSL--ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 I P H+ L E + G+ E ++RLS +GL Sbjct: 374 AIHPASTTHSQLSPEEQAQAGVSPE---MVRLS------------------------VGL 406 Query: 84 GDIEQVIEDF 93 +E + + Sbjct: 407 EHVEDLKAEL 416 >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380 Score = 24.4 bits (52), Expect = 7.1 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 29/70 (41%) Query: 26 IISPIGAIHNSL--ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 I P H S+ E+ + G+ ++ L+R+S G+ Sbjct: 329 ISMPCFMSHASIPAEVREARGLTED---LVRIS------------------------AGI 361 Query: 84 GDIEQVIEDF 93 D++ +I D Sbjct: 362 EDVDDLISDL 371 >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394 Score = 24.5 bits (52), Expect = 7.9 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 29/70 (41%) Query: 26 IISPIGAIHNSL--ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 I P H + E + GI D +IRLS +G+ Sbjct: 343 IQHPASMTHAVVPKEEREAAGITDG---MIRLS------------------------VGI 375 Query: 84 GDIEQVIEDF 93 D +++I DF Sbjct: 376 EDADELIADF 385 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.140 0.390 Gapped Lambda K H 0.267 0.0429 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 786,302 Number of extensions: 36133 Number of successful extensions: 104 Number of sequences better than 10.0: 1 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 16 Length of query: 215 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 133 Effective length of database: 1,281,736 Effective search space: 170470888 Effective search space used: 170470888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (24.2 bits)