HHsearch alignment for GI: 254780892 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=98.87 E-value=3.8e-09 Score=74.88 Aligned_cols=97 Identities=27% Similarity=0.316 Sum_probs=83.5
Q ss_pred CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 8999999979999999717999489970789987--73899996143488973999963899899999997699889976
Q gi|254780892|r 26 FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 26 ~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~K 103 (133)
T Consensus 13 ~~v~~a~~g~~~l~~~~~-~~~~~~lld~~m~~~~~~~~~~~lk~~~~~----~v~~t~~~~~~~~~~~~~~~~~~~l~~ 87 (435)
T COG3706 13 KEVATAKKGLIALAILLD-HKPDYKLLDVMMPGMDGFELCRRLKAEPAT----VVMVTALDDSAPRVRGLKAGADDFLTK 87 (435)
T ss_pred HHHHHCCCHHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHHHHCCCCC----EEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 546342542779999744-898748741006886730199876358751----699860378777556776313441367
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989899999999999999999999
Q gi|254780892|r 104 PFNRETLRFAMRELPQMQKSKDEN 127 (133)
Q Consensus 104 P~~~~~L~~~i~~~~~~~~~~~~~ 127 (133)
T Consensus 88 ~~~~~~~~~r~~~l~~~k~~~de~ 111 (435)
T COG3706 88 PVNDSQLFLRAKSLVRLKCSIDEL 111 (435)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 777177887526631444457898