HHsearch alignment for GI: 254780892 and conserved domain: PRK09390
>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=99.92 E-value=6.5e-24 Score=162.89 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=106.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
T Consensus 4 ~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~-~~pdlvllDi~mP~~~G~e~l~~l~~~--~p~~~viv 80 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKAR--GSPLPVIV 80 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCCHHHHHHHHHC--CCCCCEEE
T ss_conf 979998499999999999999889989998999999999765-797999877999998960799998722--89986799
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
T Consensus 81 lT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 81 MTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 97457488889999829464455999999999999999971