HHsearch alignment for GI: 254780892 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.58  E-value=4.7e-14  Score=104.14  Aligned_cols=112  Identities=7%  Similarity=0.040  Sum_probs=96.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHH--HHH-HHHCCCCCCCEE
Q ss_conf             77999739989999999999988989-99999979999999717999489970789987738--999-961434889739
Q gi|254780892|r    2 DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAH-VRQMPLGTDVFV   77 (133)
Q Consensus         2 ~~ILiVDD~~~~r~~l~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l--~~~-ir~~~~~~~~pi   77 (133)
T Consensus        11 ~~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~~---~pdViLmDi~mp~~~gi~~~~e~i~~--~~p~~kV   84 (216)
T PRK10100         11 HTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSR--KNNNIKI   84 (216)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCEE
T ss_conf             38999558429999999988987-647630247766776447---99989984887883089999999972--5999779


Q ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999638998999999976998899769898999999999999
Q gi|254780892|r   78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ  119 (133)
Q Consensus        78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~  119 (133)
T Consensus        85 liLTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~  126 (216)
T PRK10100         85 LLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLR  126 (216)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             999688748999999765876676689999999999999987