HHsearch alignment for GI: 254780892 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.58 E-value=4.7e-14 Score=104.14 Aligned_cols=112 Identities=7% Similarity=0.040 Sum_probs=96.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHH--HHH-HHHCCCCCCCEE
Q ss_conf 77999739989999999999988989-99999979999999717999489970789987738--999-961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAH-VRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l--~~~-ir~~~~~~~~pi 77 (133)
T Consensus 11 ~~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~~---~pdViLmDi~mp~~~gi~~~~e~i~~--~~p~~kV 84 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSR--KNNNIKI 84 (216)
T ss_pred EEEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCEE
T ss_conf 38999558429999999988987-647630247766776447---99989984887883089999999972--5999779
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999638998999999976998899769898999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
T Consensus 85 liLTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~ 126 (216)
T PRK10100 85 LLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 999688748999999765876676689999999999999987