HHsearch alignment for GI: 254780892 and conserved domain: PRK10840

>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.79  E-value=5.1e-18  Score=127.76  Aligned_cols=115  Identities=19%  Similarity=0.135  Sum_probs=102.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCC-----CCHHHHHHHHCCCCCCC
Q ss_conf             79997399899999999999889-8999-99997999999971799948997078998-----77389999614348897
Q gi|254780892|r    3 SLLLVDSSHIVRKVGRHLFNDFG-FMVF-EATSVCEAREFCEKELLPNYLVIDESMEG-----VLEFIAHVRQMPLGTDV   75 (133)
Q Consensus         3 ~ILiVDD~~~~r~~l~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~-----~~~l~~~ir~~~~~~~~   75 (133)
T Consensus         5 rIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~-~~pDvvllDl~mpg~~~~dGl~~~~~i~~~--~p~~   81 (216)
T PRK10840          5 NVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRH--FPSL   81 (216)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf             8999889799999999998159996899987999999999862-398989982677999887899999999985--8998


Q ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             399996389989999999769988997698989999999999999
Q gi|254780892|r   76 FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM  120 (133)
Q Consensus        76 pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~  120 (133)
T Consensus        82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G  126 (216)
T PRK10840         82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG  126 (216)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             089984778789999998589748998789999999999999879