HHsearch alignment for GI: 254780892 and conserved domain: PRK10840
>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.79 E-value=5.1e-18 Score=127.76 Aligned_cols=115 Identities=19% Similarity=0.135 Sum_probs=102.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCC-----CCHHHHHHHHCCCCCCC
Q ss_conf 79997399899999999999889-8999-99997999999971799948997078998-----77389999614348897
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVF-EATSVCEAREFCEKELLPNYLVIDESMEG-----VLEFIAHVRQMPLGTDV 75 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~-----~~~l~~~ir~~~~~~~~ 75 (133)
T Consensus 5 rIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~-~~pDvvllDl~mpg~~~~dGl~~~~~i~~~--~p~~ 81 (216)
T PRK10840 5 NVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRH--FPSL 81 (216)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 8999889799999999998159996899987999999999862-398989982677999887899999999985--8998
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 399996389989999999769988997698989999999999999
Q gi|254780892|r 76 FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 76 pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
T Consensus 82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G 126 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 089984778789999998589748998789999999999999879