HHsearch alignment for GI: 254780892 and conserved domain: PRK11173
>PRK11173 two-component response regulator; Provisional.
Probab=99.93 E-value=5.9e-25 Score=169.09 Aligned_cols=115 Identities=25% Similarity=0.405 Sum_probs=105.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
T Consensus 5 ~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~-~~~DlvilDi~lp~~~G~~l~~~iR~~---~~~piI~l 80 (237)
T PRK11173 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ---ANVALMFL 80 (237)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHHHHHC---CCCCEEEE
T ss_conf 89999598999999999999889999998999999999863-899899993899988730355566516---88478999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 63899899999997699889976989899999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
T Consensus 81 ta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r~ 121 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 43257788999997697678878988799999999998664