HHsearch alignment for GI: 254780892 and conserved domain: PRK11475

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=99.30  E-value=4.1e-11  Score=86.59  Aligned_cols=104  Identities=11%  Similarity=-0.046  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf             999999999889-----899-99999799999997179994899707899877--3899996143488973999963899
Q gi|254780892|r   14 RKVGRHLFNDFG-----FMV-FEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYLLMEVD   85 (133)
Q Consensus        14 r~~l~~~L~~~g-----~~v-~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~lT~~~~   85 (133)
T Consensus         3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~-~~v~~~LmDi~mP~~dGL~~~~~L~r~--~P~vriLVLTm~d~   79 (205)
T PRK11475          3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISF-SAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADDDI   79 (205)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCC-CCCEEEEECCCCCCCCHHHHHHHHHHH--CCCCEEEEEECCCC
T ss_conf             788999984189983489995054569999862886-664389853899997669999999997--89971899974768


Q ss_pred             HHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             899999997-69988997698989999999999999
Q gi|254780892|r   86 FEKMIAGAR-AGANSFLLKPFNRETLRFAMRELPQM  120 (133)
Q Consensus        86 ~~~~~~a~~-~Ga~~yl~KP~~~~~L~~~i~~~~~~  120 (133)
T Consensus        80 e~~v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g  115 (205)
T PRK11475         80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG  115 (205)
T ss_pred             HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             799999999841668885678899999999998706