HHsearch alignment for GI: 254780892 and conserved domain: PRK11475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=99.30 E-value=4.1e-11 Score=86.59 Aligned_cols=104 Identities=11% Similarity=-0.046 Sum_probs=84.9
Q ss_pred HHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 999999999889-----899-99999799999997179994899707899877--3899996143488973999963899
Q gi|254780892|r 14 RKVGRHLFNDFG-----FMV-FEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 14 r~~l~~~L~~~g-----~~v-~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~-~~v~~~LmDi~mP~~dGL~~~~~L~r~--~P~vriLVLTm~d~ 79 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISF-SAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADDDI 79 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCC-CCCEEEEECCCCCCCCHHHHHHHHHHH--CCCCEEEEEECCCC
T ss_conf 788999984189983489995054569999862886-664389853899997669999999997--89971899974768
Q ss_pred HHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 899999997-69988997698989999999999999
Q gi|254780892|r 86 FEKMIAGAR-AGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 86 ~~~~~~a~~-~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
T Consensus 80 e~~v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g 115 (205)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (205)
T ss_pred HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 799999999841668885678899999999998706