HHsearch alignment for GI: 254780892 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.87 E-value=3.6e-21 Score=146.52 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=113.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCC---CC-CHHHHHHHHC-CCCCCCEEE
Q ss_conf 999739989999999999988989999999799999997179994899707899---87-7389999614-348897399
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME---GV-LEFIAHVRQM-PLGTDVFVY 78 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP---~~-~~l~~~ir~~-~~~~~~pii 78 (133)
T Consensus 1 LLiVeDD~glQKQLkWs~G-~~Ye~~~A~DR~sAiA~vRRhe-P~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVI 78 (451)
T TIGR02915 1 LLIVEDDLGLQKQLKWSFG-ADYEVAVAADRESAIALVRRHE-PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI 78 (451)
T ss_pred CCEEECCHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9245368665678764157-8840355347578999860569-9647736755789887458999999999638980489
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999999999987750
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLDA 132 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l~a 132 (133)
T Consensus 79 ViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~ 132 (451)
T TIGR02915 79 VITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQS 132 (451)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986689838899996437510135787578999999998888888887699874