HHsearch alignment for GI: 254780892 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.87 E-value=1.3e-21 Score=149.13 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=108.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCC-----
Q ss_conf 779997399899999999999889899999997999999971799948997078998773--8999961434889-----
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD----- 74 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~----- 74 (133)
T Consensus 762 y~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~ 841 (1052)
T TIGR02956 762 YRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDE 841 (1052)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 01324644747799999998427944720854999999985488767545515788986567899999999732044456
Q ss_pred -CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf -73999963899899999997699889976989899999999999
Q gi|254780892|r 75 -VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 (133)
Q Consensus 75 -~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~ 118 (133)
T Consensus 842 p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 842 PVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 777222113344776999975302663479987788999999987