HHsearch alignment for GI: 254780892 and conserved domain: cd02072
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.06 E-value=0.75 Score=25.47 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCCEEEECCCCCCCC----HHHHHHHHCCCCCCCEEEEE
Q ss_conf 39989999999999988989999---999799999997179994899707899877----38999961434889739999
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFGFMVFE---ATSVCEAREFCEKELLPNYLVIDESMEGVL----EFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g~~v~~---a~~g~eAl~~~~~~~~pdlii~D~~mP~~~----~l~~~ir~~~~~~~~pii~l 80 (133)
T Consensus 10 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~-ad~i~vSsl~g~~~~~~~~l~~~L~e~-G~~di~vvvG 87 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD-ADAILVSSLYGHGEIDCKGLREKCDEA-GLKDILLYVG 87 (128)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHHHHC-CCCCCEEEEC
T ss_conf 65378899999999978972984798899999999998739-999998232025624899999999967-9999989978
Q ss_pred E----CCCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 6----3899-899999997699889976989899999999
Q gi|254780892|r 81 L----MEVD-FEKMIAGARAGANSFLLKPFNRETLRFAMR 115 (133)
Q Consensus 81 T----~~~~-~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~ 115 (133)
T Consensus 88 G~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~ 127 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 9867783104899999996696857499879999999985