Query gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 133
No_of_seqs 112 out of 20103
Neff 7.8
Searched_HMMs 39220
Date Mon May 30 04:12:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780892.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02154 PhoB phosphate regul 100.0 3.9E-36 9.9E-41 235.7 10.6 128 2-130 3-132 (226)
2 PRK09581 pleD response regulat 100.0 4.7E-29 1.2E-33 193.5 18.8 119 2-121 3-123 (457)
3 PRK10693 response regulator of 100.0 3.4E-28 8.6E-33 188.4 18.7 115 2-119 8-125 (337)
4 PRK11361 acetoacetate metaboli 100.0 7.9E-28 2E-32 186.2 17.3 127 1-130 4-132 (457)
5 PRK11107 hybrid sensory histid 100.0 7.9E-28 2E-32 186.2 16.8 115 3-118 670-786 (920)
6 PRK10161 transcriptional regul 100.0 8.7E-28 2.2E-32 186.0 16.4 121 1-122 2-124 (229)
7 PRK10610 chemotaxis regulatory 100.0 1.1E-27 2.7E-32 185.4 16.7 118 3-121 7-127 (129)
8 PRK10923 glnG nitrogen regulat 100.0 1.4E-27 3.5E-32 184.8 16.5 122 2-126 4-127 (469)
9 PRK10841 hybrid sensory kinase 100.0 5.4E-27 1.4E-31 181.2 17.5 118 2-122 825-944 (947)
10 PRK10955 DNA-binding transcrip 100.0 2.1E-27 5.4E-32 183.7 12.9 117 1-122 1-119 (232)
11 PRK10701 DNA-binding transcrip 100.0 4.1E-27 1.1E-31 181.9 14.4 120 1-124 1-122 (240)
12 PRK10529 DNA-binding transcrip 99.9 5E-27 1.3E-31 181.4 14.2 118 1-122 1-120 (225)
13 PRK09468 ompR osmolarity respo 99.9 1.8E-26 4.6E-31 178.1 16.6 119 2-123 6-126 (239)
14 CHL00148 orf27 Ycf27; Reviewed 99.9 7.4E-27 1.9E-31 180.4 14.6 117 2-122 7-125 (240)
15 PRK10365 transcriptional regul 99.9 3E-26 7.7E-31 176.8 17.2 118 3-123 7-126 (441)
16 PRK10336 DNA-binding transcrip 99.9 1.8E-26 4.7E-31 178.1 15.6 117 3-122 2-120 (219)
17 PRK11083 DNA-binding response 99.9 3.1E-26 7.8E-31 176.8 16.6 118 2-122 4-123 (229)
18 PRK09836 DNA-binding transcrip 99.9 2.8E-26 7E-31 177.0 16.0 117 3-122 2-120 (226)
19 PRK11517 transcriptional regul 99.9 5.4E-26 1.4E-30 175.3 15.6 116 3-122 2-119 (223)
20 pfam00072 Response_reg Respons 99.9 3.9E-26 1E-30 176.1 14.8 109 4-115 1-111 (111)
21 PRK11091 aerobic respiration c 99.9 1.2E-25 3E-30 173.2 16.0 117 2-120 526-645 (779)
22 PRK10046 dpiA two-component re 99.9 1.1E-25 2.9E-30 173.3 15.6 121 3-126 6-130 (225)
23 COG0745 OmpR Response regulato 99.9 9.1E-26 2.3E-30 173.9 14.7 118 2-122 1-120 (229)
24 PRK13856 two-component respons 99.9 2.4E-25 6.1E-30 171.4 16.3 118 1-122 1-121 (241)
25 PRK10766 DNA-binding transcrip 99.9 1.5E-25 3.8E-30 172.7 14.7 118 2-123 3-122 (224)
26 PRK09959 hybrid sensory histid 99.9 3.3E-25 8.4E-30 170.6 16.4 115 2-119 959-1075(1197)
27 COG4753 Response regulator con 99.9 2.7E-25 6.8E-30 171.1 15.9 121 1-124 1-126 (475)
28 PRK10430 DNA-binding transcrip 99.9 3.2E-25 8.1E-30 170.7 15.3 122 1-124 1-127 (239)
29 PRK11173 two-component respons 99.9 5.9E-25 1.5E-29 169.1 16.4 115 3-121 5-121 (237)
30 cd00156 REC Signal receiver do 99.9 4.8E-25 1.2E-29 169.6 15.2 111 5-118 1-113 (113)
31 TIGR01387 cztR_silR_copR heavy 99.9 6E-27 1.5E-31 181.0 5.3 121 4-127 1-123 (219)
32 COG2204 AtoC Response regulato 99.9 9E-25 2.3E-29 168.0 16.5 125 1-128 4-130 (464)
33 PRK11466 hybrid sensory histid 99.9 6.6E-25 1.7E-29 168.8 15.7 116 2-119 682-799 (912)
34 PRK13557 histidine kinase; Pro 99.9 9.7E-25 2.5E-29 167.8 16.3 116 2-119 414-532 (538)
35 PRK10643 DNA-binding transcrip 99.9 9.5E-25 2.4E-29 167.8 16.1 119 1-123 1-121 (222)
36 PRK10710 DNA-binding transcrip 99.9 1.3E-24 3.4E-29 167.0 15.3 117 2-122 11-129 (240)
37 PRK10816 DNA-binding transcrip 99.9 2.1E-24 5.3E-29 165.8 14.7 117 3-122 2-120 (223)
38 PRK09390 fixJ response regulat 99.9 6.5E-24 1.7E-28 162.9 14.7 116 2-120 4-121 (202)
39 TIGR01818 ntrC nitrogen regula 99.9 1.6E-24 4.2E-29 166.4 11.5 122 4-127 1-124 (471)
40 PRK13435 response regulator; P 99.9 1.4E-23 3.7E-28 160.8 15.0 115 2-123 2-120 (141)
41 TIGR02875 spore_0_A sporulatio 99.9 2.4E-23 6.2E-28 159.5 13.2 117 3-120 4-124 (270)
42 COG3437 Response regulator con 99.9 4.7E-23 1.2E-27 157.7 13.5 119 2-121 15-136 (360)
43 COG3706 PleD Response regulato 99.9 4.1E-22 1E-26 152.2 16.1 122 1-123 132-255 (435)
44 KOG0519 consensus 99.9 2.2E-22 5.7E-27 153.7 12.8 117 2-119 667-785 (786)
45 PRK00742 chemotaxis-specific m 99.9 3.7E-21 9.4E-26 146.5 15.7 102 1-106 1-109 (345)
46 TIGR02956 TMAO_torS TMAO reduc 99.9 1.3E-21 3.4E-26 149.1 10.9 117 2-118 762-886 (1052)
47 COG4566 TtrR Response regulato 99.9 6.9E-21 1.8E-25 144.8 14.5 120 2-124 5-126 (202)
48 TIGR02915 PEP_resp_reg putativ 99.9 3.6E-21 9.2E-26 146.5 12.7 127 4-132 1-132 (451)
49 PRK09483 response regulator; P 99.9 6.2E-20 1.6E-24 139.1 15.9 117 1-120 1-121 (216)
50 PRK12555 chemotaxis-specific m 99.8 6.3E-20 1.6E-24 139.1 15.1 100 2-105 2-107 (340)
51 PRK09958 DNA-binding transcrip 99.8 2.1E-19 5.4E-24 136.0 15.6 114 3-119 2-118 (204)
52 PRK10651 transcriptional regul 99.8 1.3E-19 3.3E-24 137.2 14.4 115 2-119 7-125 (216)
53 PRK10403 transcriptional regul 99.8 1.8E-19 4.6E-24 136.4 15.1 115 2-119 7-125 (215)
54 COG4565 CitB Response regulato 99.8 2.1E-19 5.3E-24 136.1 15.0 124 3-129 2-129 (224)
55 PRK13837 two-component VirA-li 99.8 1.5E-18 3.7E-23 131.0 15.2 117 2-122 700-819 (831)
56 PRK09935 transcriptional regul 99.8 2.3E-18 5.8E-23 129.8 15.8 116 2-120 4-123 (210)
57 PRK10360 DNA-binding transcrip 99.8 2E-18 5E-23 130.2 15.4 114 1-120 1-118 (196)
58 COG2197 CitB Response regulato 99.8 6.4E-18 1.6E-22 127.2 15.7 115 3-120 2-120 (211)
59 PRK10840 transcriptional regul 99.8 5.1E-18 1.3E-22 127.8 14.9 115 3-120 5-126 (216)
60 PRK11697 putative two-componen 99.8 2.1E-17 5.5E-22 124.0 16.5 117 1-123 1-121 (239)
61 COG0784 CheY FOG: CheY-like re 99.8 5.2E-17 1.3E-21 121.7 15.8 117 2-120 6-126 (130)
62 PRK09191 two-component respons 99.7 8.9E-17 2.3E-21 120.3 12.2 113 2-120 138-254 (261)
63 COG3947 Response regulator con 99.7 9.1E-17 2.3E-21 120.3 9.0 115 3-122 2-118 (361)
64 COG4567 Response regulator con 99.7 2.1E-15 5.4E-20 112.1 12.3 113 2-117 10-124 (182)
65 COG2201 CheB Chemotaxis respon 99.7 8.9E-15 2.3E-19 108.4 14.6 102 1-106 1-108 (350)
66 COG3707 AmiR Response regulato 99.6 2E-14 5E-19 106.4 13.5 115 1-117 5-120 (194)
67 PRK10100 DNA-binding transcrip 99.6 4.7E-14 1.2E-18 104.1 12.7 112 2-119 11-126 (216)
68 PRK13558 bacterio-opsin activa 99.4 7.6E-13 1.9E-17 96.9 9.5 110 3-117 19-130 (674)
69 PRK11475 DNA-binding transcrip 99.3 4.1E-11 1.1E-15 86.6 11.2 104 14-120 3-115 (205)
70 COG3279 LytT Response regulato 99.3 9.4E-11 2.4E-15 84.4 11.3 115 1-120 1-119 (244)
71 PRK09581 pleD response regulat 99.2 1.5E-09 3.8E-14 77.3 15.4 120 2-123 156-277 (457)
72 smart00448 REC cheY-homologous 99.0 1.3E-09 3.3E-14 77.7 8.4 55 2-57 1-55 (55)
73 PRK11107 hybrid sensory histid 99.0 1.9E-08 4.9E-13 70.7 12.5 109 2-115 537-647 (920)
74 COG3706 PleD Response regulato 98.9 3.8E-09 9.7E-14 74.9 5.7 97 26-127 13-111 (435)
75 pfam06490 FleQ Flagellar regul 98.5 1.8E-06 4.6E-11 58.9 11.0 107 3-117 1-107 (109)
76 pfam03709 OKR_DC_1_N Orn/Lys/A 96.9 0.0078 2E-07 37.3 7.9 101 15-118 7-108 (111)
77 cd02070 corrinoid_protein_B12- 96.5 0.036 9.1E-07 33.3 9.0 91 11-105 96-193 (201)
78 cd02067 B12-binding B12 bindin 96.4 0.045 1.1E-06 32.7 9.1 90 13-105 15-111 (119)
79 TIGR01815 TrpE-clade3 anthrani 95.2 0.058 1.5E-06 32.1 5.8 74 2-78 525-600 (726)
80 PRK13566 anthranilate synthase 95.2 0.097 2.5E-06 30.8 6.9 74 2-78 524-599 (724)
81 PRK02261 methylaspartate mutas 94.2 0.47 1.2E-05 26.7 12.3 110 8-119 14-135 (137)
82 PRK05637 anthranilate synthase 93.9 0.13 3.4E-06 30.0 5.0 51 1-53 1-51 (208)
83 COG4999 Uncharacterized domain 93.9 0.3 7.5E-06 27.9 6.8 106 2-114 12-121 (140)
84 COG0512 PabA Anthranilate/para 93.1 0.52 1.3E-05 26.4 7.0 77 1-80 1-80 (191)
85 cd02072 Glm_B12_BD B12 binding 93.1 0.75 1.9E-05 25.5 12.0 106 8-115 10-127 (128)
86 COG2185 Sbm Methylmalonyl-CoA 91.5 1.2 3E-05 24.3 11.8 109 8-119 23-138 (143)
87 PRK09522 bifunctional anthrani 91.4 0.55 1.4E-05 26.3 5.4 76 1-80 1-83 (531)
88 cd02069 methionine_synthase_B1 91.3 1.2 3.1E-05 24.2 8.6 94 11-107 102-205 (213)
89 TIGR01497 kdpB K+-transporting 90.8 1.4 3.5E-05 23.9 7.5 82 32-115 412-502 (675)
90 cd02068 radical_SAM_B12_BD B12 90.5 1.4 3.7E-05 23.8 8.6 101 13-116 4-109 (127)
91 cd02071 MM_CoA_mut_B12_BD meth 90.2 1.5 4E-05 23.6 12.1 104 8-114 10-120 (122)
92 pfam00977 His_biosynth Histidi 89.5 1.8 4.5E-05 23.2 6.9 65 35-102 150-219 (229)
93 TIGR02397 dnaX_nterm DNA polym 88.3 1.5 3.9E-05 23.6 5.6 102 26-131 88-201 (363)
94 TIGR00708 cobA cob(I)alamin ad 87.6 1.3 3.3E-05 24.0 4.9 56 35-94 104-166 (191)
95 PRK03220 consensus 86.8 2.6 6.7E-05 22.2 8.2 79 35-116 162-251 (257)
96 PRK04195 replication factor C 84.6 3.4 8.6E-05 21.6 7.2 104 18-122 58-178 (403)
97 PRK10669 putative cation:proto 84.4 3.4 8.8E-05 21.5 9.6 92 3-103 442-535 (558)
98 PRK13597 imidazole glycerol ph 83.4 3.8 9.6E-05 21.3 8.3 65 47-114 167-242 (252)
99 COG3684 LacD Tagatose-1,6-bisp 83.2 3.4 8.6E-05 21.6 5.3 57 47-103 198-263 (306)
100 PRK07206 hypothetical protein; 83.1 3.4 8.6E-05 21.6 5.3 114 1-119 2-180 (415)
101 COG2216 KdpB High-affinity K+ 83.0 2.3 5.8E-05 22.6 4.4 62 42-107 424-498 (681)
102 CHL00162 thiG thiamin biosynth 82.7 4 0.0001 21.1 10.4 103 17-122 129-242 (267)
103 PRK09426 methylmalonyl-CoA mut 82.7 4.1 0.0001 21.1 12.5 94 8-104 593-693 (715)
104 pfam02310 B12-binding B12 bind 82.3 4.2 0.00011 21.0 9.5 90 10-104 13-111 (121)
105 PRK07649 para-aminobenzoate/an 82.2 3.9 9.8E-05 21.2 5.3 88 4-98 2-92 (195)
106 PRK13585 1-(5-phosphoribosyl)- 82.0 4.3 0.00011 20.9 6.4 77 35-114 151-238 (240)
107 PRK06101 short chain dehydroge 81.5 4.5 0.00011 20.8 8.6 65 1-66 1-65 (241)
108 PRK08904 consensus 81.4 4.5 0.00011 20.8 11.6 92 17-113 3-98 (207)
109 pfam00456 Transketolase_N Tran 81.1 3.4 8.7E-05 21.5 4.7 54 4-57 177-246 (333)
110 PRK09590 celB cellobiose phosp 80.8 4.7 0.00012 20.7 6.3 78 1-82 1-83 (104)
111 PRK08007 para-aminobenzoate sy 80.3 4.1 0.00011 21.0 4.9 87 4-98 2-92 (187)
112 pfam05690 ThiG Thiazole biosyn 80.0 5 0.00013 20.5 9.6 101 17-123 114-228 (246)
113 pfam00563 EAL EAL domain. This 79.8 5.1 0.00013 20.5 6.2 92 10-104 130-233 (233)
114 COG3959 Transketolase, N-termi 79.5 4.1 0.0001 21.0 4.7 39 17-55 197-241 (243)
115 COG0742 N6-adenine-specific me 79.5 5.2 0.00013 20.4 6.5 60 1-60 66-129 (187)
116 PRK08782 consensus 79.0 5.4 0.00014 20.3 11.5 97 13-114 6-106 (219)
117 PRK00208 thiG thiazole synthas 78.8 5.5 0.00014 20.3 9.3 100 17-122 116-229 (256)
118 PRK13587 1-(5-phosphoribosyl)- 78.3 5.7 0.00015 20.2 8.1 69 33-104 149-223 (234)
119 PRK05670 anthranilate synthase 78.2 4.6 0.00012 20.8 4.6 87 4-98 2-92 (192)
120 PRK06774 para-aminobenzoate sy 78.0 5.3 0.00013 20.4 4.9 74 4-80 2-78 (191)
121 PRK13180 consensus 77.4 5.6 0.00014 20.2 4.9 36 1-36 1-36 (209)
122 PRK03659 glutathione-regulated 77.2 6.1 0.00016 20.0 9.6 95 3-106 425-521 (602)
123 KOG4175 consensus 77.1 3.4 8.6E-05 21.6 3.6 43 69-111 90-138 (268)
124 PRK06953 short chain dehydroge 76.5 6.4 0.00016 19.9 7.1 77 1-82 1-78 (222)
125 CHL00101 trpG anthranilate syn 76.1 6.6 0.00017 19.8 5.2 49 4-53 2-50 (190)
126 PRK13175 consensus 75.8 6.2 0.00016 20.0 4.7 36 1-36 1-36 (206)
127 TIGR02130 dapB_plant dihydrodi 75.4 4.8 0.00012 20.6 4.1 62 38-104 61-123 (275)
128 PRK01033 imidazole glycerol ph 75.3 6.9 0.00018 19.7 7.1 65 35-102 155-225 (253)
129 PRK13138 consensus 75.3 6.9 0.00018 19.7 5.1 44 61-106 79-130 (264)
130 COG1091 RfbD dTDP-4-dehydrorha 75.1 7 0.00018 19.7 5.4 54 1-56 1-60 (281)
131 cd04728 ThiG Thiazole synthase 75.1 7 0.00018 19.7 9.4 100 17-122 115-228 (248)
132 PRK02645 ppnK inorganic polyph 74.8 7.1 0.00018 19.6 7.7 76 1-81 3-88 (304)
133 PRK02621 consensus 74.5 7.2 0.00018 19.6 6.8 78 36-116 158-247 (254)
134 cd04732 HisA HisA. Phosphorib 74.4 7.3 0.00019 19.6 8.5 28 74-101 190-217 (234)
135 cd06268 PBP1_ABC_transporter_L 74.1 7.4 0.00019 19.5 11.8 101 2-105 136-247 (298)
136 PRK08857 para-aminobenzoate sy 74.1 6.7 0.00017 19.8 4.5 49 4-53 2-50 (192)
137 PRK13137 consensus 73.5 5.4 0.00014 20.3 3.9 47 60-109 89-141 (266)
138 PRK12858 tagatose 1,6-diphosph 73.3 7.7 0.0002 19.4 6.3 65 37-102 191-277 (340)
139 PRK00758 GMP synthase subunit 73.1 7.9 0.0002 19.4 5.3 70 3-80 1-73 (184)
140 PRK13143 hisH imidazole glycer 73.1 7.9 0.0002 19.4 5.0 47 1-58 1-47 (201)
141 PRK05693 short chain dehydroge 72.9 7.9 0.0002 19.3 8.0 79 1-82 1-80 (274)
142 PRK03562 glutathione-regulated 72.8 8 0.0002 19.3 9.7 95 3-106 424-520 (615)
143 PRK01122 potassium-transportin 71.8 5.7 0.00014 20.2 3.7 55 56-115 452-506 (684)
144 cd01743 GATase1_Anthranilate_S 71.6 8.5 0.00022 19.2 6.0 49 4-53 1-49 (184)
145 pfam03602 Cons_hypoth95 Conser 71.5 8.6 0.00022 19.1 8.0 26 30-56 51-76 (181)
146 cd04722 TIM_phosphate_binding 71.4 8.6 0.00022 19.1 8.7 89 13-102 101-198 (200)
147 PRK13119 consensus 71.1 8.7 0.00022 19.1 5.9 48 60-109 80-133 (261)
148 PRK13222 phosphoglycolate phos 70.3 9.1 0.00023 19.0 4.9 56 56-116 95-161 (228)
149 PRK13120 consensus 70.3 9.1 0.00023 19.0 4.6 49 60-110 86-140 (285)
150 cd04723 HisA_HisF Phosphoribos 69.9 9.3 0.00024 18.9 7.5 66 33-102 147-217 (233)
151 PRK13223 phosphoglycolate phos 69.8 8.1 0.00021 19.3 4.2 106 6-117 24-170 (272)
152 PRK01659 consensus 69.1 9.7 0.00025 18.8 7.9 79 35-116 156-246 (252)
153 PRK06096 molybdenum transport 68.7 9.8 0.00025 18.8 7.8 68 28-100 193-261 (284)
154 PRK13116 consensus 68.2 10 0.00026 18.7 6.0 30 73-102 205-234 (278)
155 cd06358 PBP1_NHase Type I peri 68.1 10 0.00026 18.7 11.7 89 1-92 132-231 (333)
156 cd03791 GT1_Glycogen_synthase_ 67.7 10 0.00026 18.7 9.0 65 56-123 376-445 (476)
157 pfam09936 DUF2168 Uncharacteri 67.4 10 0.00027 18.6 9.3 99 2-106 43-161 (185)
158 COG0118 HisH Glutamine amidotr 67.3 11 0.00027 18.6 5.0 36 1-36 1-36 (204)
159 KOG1185 consensus 67.1 11 0.00027 18.6 7.7 82 35-121 462-549 (571)
160 PRK13114 consensus 67.0 11 0.00027 18.6 5.4 35 72-106 88-128 (266)
161 cd07015 Clp_protease_NfeD Nodu 66.9 10 0.00026 18.7 4.2 47 35-82 19-67 (172)
162 cd02007 TPP_DXS Thiamine pyrop 66.8 5.2 0.00013 20.4 2.7 12 105-116 164-175 (195)
163 PRK13227 consensus 66.7 11 0.00028 18.5 4.7 57 56-117 98-165 (228)
164 PRK13118 consensus 66.6 11 0.00028 18.5 6.1 37 72-108 92-134 (269)
165 PRK13229 consensus 65.9 11 0.00029 18.4 4.3 57 56-117 96-163 (234)
166 PRK02145 consensus 65.7 11 0.00029 18.4 7.7 76 36-114 161-248 (257)
167 PRK04281 consensus 65.7 11 0.00029 18.4 9.3 77 36-115 158-246 (254)
168 PRK10558 alpha-dehydro-beta-de 65.2 12 0.0003 18.4 9.9 104 10-115 3-111 (256)
169 TIGR03572 WbuZ glycosyl amidat 64.9 12 0.0003 18.3 7.2 68 36-103 157-227 (232)
170 PRK13133 consensus 64.9 7.8 0.0002 19.4 3.3 52 58-109 78-137 (267)
171 COG2022 ThiG Uncharacterized e 64.6 12 0.0003 18.3 9.1 102 16-120 121-233 (262)
172 TIGR02858 spore_III_AA stage I 64.6 10 0.00026 18.7 3.8 78 2-85 159-241 (282)
173 COG0157 NadC Nicotinate-nucleo 64.1 12 0.00031 18.2 9.5 79 16-100 177-259 (280)
174 PRK10128 putative aldolase; Pr 64.1 12 0.00031 18.2 9.7 83 32-116 9-94 (250)
175 PRK13112 consensus 63.9 12 0.00031 18.2 5.2 37 72-108 93-135 (279)
176 cd04730 NPD_like 2-Nitropropan 63.6 12 0.00032 18.2 9.8 82 17-103 94-185 (236)
177 PTZ00089 transketolase; Provis 63.1 13 0.00032 18.1 4.7 54 3-56 180-250 (670)
178 pfam00290 Trp_syntA Tryptophan 62.9 13 0.00033 18.1 5.4 38 72-109 84-127 (258)
179 PRK04128 1-(5-phosphoribosyl)- 62.7 13 0.00033 18.1 7.7 63 35-101 146-209 (228)
180 PRK12399 tagatose 1,6-diphosph 62.0 13 0.00034 18.0 4.7 66 36-102 187-274 (324)
181 PRK02083 imidazole glycerol ph 61.7 13 0.00034 18.0 7.6 78 35-115 156-245 (253)
182 PRK13224 consensus 61.6 14 0.00035 18.0 4.8 55 56-115 88-153 (216)
183 PRK06305 DNA polymerase III su 61.5 14 0.00035 18.0 4.5 73 47-123 122-198 (462)
184 PRK13508 tagatose-6-phosphate 61.1 14 0.00035 17.9 8.3 65 47-115 127-193 (309)
185 cd06360 PBP1_alkylbenzenes_lik 61.0 14 0.00035 17.9 13.4 92 2-94 135-237 (336)
186 PRK13117 consensus 60.9 14 0.00035 17.9 10.5 31 72-102 203-233 (268)
187 cd06342 PBP1_ABC_LIVBP_like Ty 60.9 14 0.00036 17.9 12.2 102 2-106 136-248 (334)
188 COG5012 Predicted cobalamin bi 60.7 14 0.00036 17.9 5.6 87 14-104 121-214 (227)
189 cd01948 EAL EAL domain. This d 60.7 14 0.00036 17.9 5.0 91 15-107 135-238 (240)
190 COG1908 FrhD Coenzyme F420-red 60.7 14 0.00036 17.9 3.9 49 58-106 14-63 (132)
191 TIGR01334 modD modD protein; I 60.3 14 0.00036 17.8 7.2 92 7-103 169-263 (277)
192 COG0637 Predicted phosphatase/ 60.3 14 0.00036 17.8 4.9 108 5-117 12-155 (221)
193 PRK13113 consensus 60.2 14 0.00036 17.8 5.7 37 72-108 92-134 (263)
194 TIGR02708 L_lactate_ox L-lacta 60.1 13 0.00032 18.1 3.6 86 17-104 221-315 (368)
195 PRK00830 consensus 60.1 14 0.00037 17.8 7.9 75 38-115 179-265 (273)
196 PRK10909 rsmD 16S rRNA m(2)G96 60.0 14 0.00037 17.8 8.1 24 3-26 77-100 (198)
197 PRK03958 tRNA 2'-O-methylase; 59.9 15 0.00037 17.8 8.2 77 2-83 32-112 (175)
198 PRK13173 consensus 59.7 15 0.00037 17.8 5.1 36 1-36 1-36 (211)
199 cd01573 modD_like ModD; Quinol 59.4 15 0.00038 17.7 8.2 69 28-101 187-256 (272)
200 PRK05211 consensus 58.9 15 0.00038 17.7 6.1 75 38-115 154-240 (248)
201 cd04731 HisF The cyclase subun 58.8 15 0.00039 17.7 7.0 76 36-114 153-240 (243)
202 pfam01729 QRPTase_C Quinolinat 58.8 15 0.00039 17.7 7.6 67 29-100 85-152 (169)
203 TIGR00078 nadC nicotinate-nucl 58.6 15 0.00039 17.6 7.1 67 30-102 192-259 (276)
204 PRK06895 para-aminobenzoate sy 58.5 15 0.00039 17.6 5.0 88 2-98 3-93 (191)
205 COG1030 NfeD Membrane-bound se 58.4 15 0.00039 17.6 4.6 44 35-79 46-90 (436)
206 TIGR02253 CTE7 HAD superfamily 57.7 16 0.0004 17.6 5.9 56 57-117 116-182 (244)
207 pfam08886 GshA Glutamate-cyste 57.6 16 0.00041 17.5 4.1 123 2-126 78-253 (404)
208 PRK06552 keto-hydroxyglutarate 57.5 16 0.00041 17.5 12.8 95 17-114 6-105 (209)
209 PRK13121 consensus 57.3 16 0.00041 17.5 6.1 38 72-109 92-135 (265)
210 PRK02747 consensus 57.1 16 0.00041 17.5 8.0 77 36-115 160-248 (257)
211 PRK07765 para-aminobenzoate sy 57.0 16 0.00041 17.5 6.5 76 3-81 2-83 (221)
212 cd04734 OYE_like_3_FMN Old yel 56.8 16 0.00042 17.5 7.3 40 60-102 274-313 (343)
213 cd06348 PBP1_ABC_ligand_bindin 56.3 17 0.00043 17.4 13.1 103 2-107 137-251 (344)
214 PRK07413 hypothetical protein; 55.3 17 0.00044 17.3 5.7 44 47-93 126-176 (382)
215 TIGR01134 purF amidophosphorib 54.8 18 0.00045 17.3 4.1 33 2-34 361-398 (467)
216 PRK05563 DNA polymerase III su 54.7 18 0.00045 17.3 4.4 73 47-123 120-196 (541)
217 cd01568 QPRTase_NadC Quinolina 54.7 18 0.00045 17.3 9.8 68 28-101 185-253 (269)
218 PRK13171 consensus 52.7 19 0.00049 17.1 4.8 36 1-36 1-36 (200)
219 cd06323 PBP1_ribose_binding Pe 52.7 19 0.00049 17.1 5.9 19 14-32 18-36 (268)
220 COG0626 MetC Cystathionine bet 52.6 19 0.00049 17.1 9.1 94 3-102 104-206 (396)
221 PRK04161 tagatose 1,6-diphosph 52.6 19 0.00049 17.1 6.1 66 36-102 189-276 (326)
222 PRK01130 N-acetylmannosamine-6 51.9 20 0.0005 17.0 10.9 93 12-110 106-211 (222)
223 TIGR03239 GarL 2-dehydro-3-deo 51.8 20 0.00051 17.0 8.9 87 28-116 16-105 (249)
224 PRK10826 2-deoxyglucose-6-phos 51.7 20 0.00051 17.0 5.8 107 6-117 18-161 (222)
225 PRK11070 ssDNA exonuclease Rec 51.5 17 0.00042 17.4 3.1 34 24-58 125-162 (574)
226 COG0167 PyrD Dihydroorotate de 51.3 20 0.00051 16.9 5.0 61 63-124 231-298 (310)
227 pfam00448 SRP54 SRP54-type pro 50.6 21 0.00053 16.9 9.6 96 12-108 43-153 (196)
228 cd07020 Clp_protease_NfeD_1 No 50.4 21 0.00053 16.8 4.5 46 35-81 19-65 (187)
229 TIGR01124 ilvA_2Cterm threonin 50.2 21 0.00053 16.8 6.3 74 20-97 133-217 (508)
230 TIGR01090 apt adenine phosphor 50.2 21 0.00053 16.8 3.6 32 2-33 115-149 (175)
231 TIGR01684 viral_ppase viral ph 50.1 21 0.00054 16.8 5.4 95 1-100 68-203 (323)
232 PRK10742 putative methyltransf 50.1 21 0.00054 16.8 3.9 100 3-110 112-226 (250)
233 cd04509 PBP1_ABC_transporter_G 49.9 21 0.00054 16.8 11.7 103 2-105 137-250 (299)
234 COG4148 ModC ABC-type molybdat 49.7 17 0.00044 17.3 2.9 41 45-85 145-190 (352)
235 pfam00218 IGPS Indole-3-glycer 49.4 22 0.00055 16.8 11.1 89 12-103 145-238 (254)
236 PRK07102 short chain dehydroge 49.3 22 0.00055 16.7 8.6 42 1-42 1-42 (243)
237 PRK01395 V-type ATP synthase s 49.2 22 0.00055 16.7 5.0 74 1-84 3-81 (104)
238 pfam01976 DUF116 Protein of un 49.2 22 0.00056 16.7 5.0 49 15-67 76-124 (158)
239 COG3836 HpcH 2,4-dihydroxyhept 49.1 22 0.00056 16.7 7.3 93 16-110 7-103 (255)
240 PRK13140 consensus 48.9 22 0.00056 16.7 7.0 47 60-109 79-131 (257)
241 PRK10653 D-ribose transporter 48.6 22 0.00057 16.7 6.8 18 16-33 47-64 (295)
242 pfam04309 G3P_antiterm Glycero 48.3 22 0.00057 16.6 6.7 80 16-102 81-167 (174)
243 TIGR00644 recJ single-stranded 48.2 19 0.00048 17.1 2.9 78 20-98 109-193 (705)
244 PRK11572 copper homeostasis pr 48.0 23 0.00058 16.6 8.3 90 8-101 97-196 (248)
245 PTZ00314 inosine-5'-monophosph 47.9 23 0.00058 16.6 7.6 64 35-102 240-306 (499)
246 COG1634 Uncharacterized Rossma 47.6 23 0.00059 16.6 7.9 94 2-101 53-176 (232)
247 PRK02649 ppnK inorganic polyph 47.6 23 0.00059 16.6 7.5 105 1-120 1-124 (305)
248 smart00052 EAL Putative diguan 47.2 23 0.0006 16.6 4.5 92 14-107 135-239 (241)
249 PRK11840 bifunctional sulfur c 46.9 24 0.0006 16.5 13.1 104 16-122 189-303 (327)
250 cd03804 GT1_wbaZ_like This fam 46.9 24 0.0006 16.5 3.9 45 72-120 282-326 (351)
251 CHL00188 hisH imidazole glycer 46.6 24 0.00061 16.5 5.1 36 1-36 1-36 (210)
252 PRK05899 transketolase; Review 46.5 24 0.00061 16.5 5.8 53 4-56 183-251 (661)
253 PRK08385 nicotinate-nucleotide 46.5 24 0.00061 16.5 8.2 69 29-100 188-257 (279)
254 PRK13226 phosphoglycolate phos 46.0 24 0.00062 16.4 5.7 58 55-117 88-156 (221)
255 pfam01596 Methyltransf_3 O-met 46.0 24 0.00062 16.4 7.1 62 3-64 71-138 (204)
256 PRK09922 UDP-D-galactose:(gluc 45.9 25 0.00063 16.4 10.2 46 72-120 281-326 (361)
257 PRK09111 DNA polymerase III su 45.9 25 0.00063 16.4 4.5 74 47-124 132-209 (600)
258 cd03805 GT1_ALG2_like This fam 44.5 26 0.00066 16.3 4.9 44 72-120 321-364 (392)
259 PRK13288 pyrophosphatase PpaX; 44.1 26 0.00067 16.3 5.6 89 20-111 93-192 (214)
260 TIGR02088 LEU3_arch isopropylm 44.0 25 0.00064 16.4 3.0 58 9-66 192-251 (350)
261 PRK06843 inositol-5-monophosph 43.2 27 0.00069 16.2 6.8 61 38-102 158-221 (404)
262 PRK05986 cob(I)yrinic acid a,c 42.9 27 0.0007 16.1 4.3 54 36-93 101-165 (190)
263 PRK08267 short chain dehydroge 42.9 27 0.0007 16.1 5.6 81 1-82 1-85 (258)
264 PRK07896 nicotinate-nucleotide 42.8 27 0.0007 16.1 7.3 64 30-98 204-268 (288)
265 TIGR00007 TIGR00007 phosphorib 42.6 28 0.0007 16.1 8.0 76 25-102 144-227 (241)
266 PRK09482 xni exonuclease IX; P 42.2 23 0.00059 16.6 2.6 54 1-55 2-55 (256)
267 COG0106 HisA Phosphoribosylfor 42.2 28 0.00072 16.1 8.0 87 25-114 140-238 (241)
268 TIGR02472 sucr_P_syn_N sucrose 41.3 29 0.00074 16.0 4.0 58 57-123 358-415 (445)
269 cd03820 GT1_amsD_like This fam 41.3 29 0.00074 16.0 4.9 45 72-120 274-319 (348)
270 cd01534 4RHOD_Repeat_3 Member 41.2 29 0.00073 16.0 3.0 68 33-101 2-85 (95)
271 PRK13172 consensus 41.1 29 0.00074 16.0 5.1 36 1-36 1-36 (213)
272 COG2217 ZntA Cation transport 41.1 29 0.00074 16.0 5.6 59 51-113 534-594 (713)
273 PRK07994 DNA polymerase III su 40.8 29 0.00075 16.0 4.0 72 47-122 120-195 (643)
274 cd04824 eu_ALAD_PBGS_cysteine_ 40.7 28 0.00072 16.1 2.9 12 93-104 235-246 (320)
275 cd00561 CobA_CobO_BtuR ATP:cor 40.6 30 0.00076 15.9 4.5 49 41-93 91-146 (159)
276 pfam02572 CobA_CobO_BtuR ATP:c 40.4 30 0.00076 15.9 5.0 47 44-93 94-147 (172)
277 PRK11908 NAD-dependent epimera 40.4 30 0.00076 15.9 5.3 34 1-34 1-35 (347)
278 pfam01081 Aldolase KDPG and KH 40.0 30 0.00077 15.9 10.7 89 19-112 3-95 (196)
279 PRK05718 keto-hydroxyglutarate 39.9 30 0.00078 15.9 12.0 96 13-113 4-103 (212)
280 TIGR03351 PhnX-like phosphonat 39.7 31 0.00078 15.8 5.0 107 6-117 12-158 (220)
281 COG1568 Predicted methyltransf 39.3 31 0.00079 15.8 3.4 52 2-54 176-229 (354)
282 COG0565 LasT rRNA methylase [T 39.2 31 0.0008 15.8 3.2 25 3-27 6-31 (242)
283 cd01742 GATase1_GMP_Synthase T 39.2 31 0.0008 15.8 5.1 84 4-98 1-90 (181)
284 cd07021 Clp_protease_NfeD_like 39.2 31 0.0008 15.8 4.4 47 35-82 19-67 (178)
285 cd06322 PBP1_ABC_sugar_binding 39.0 32 0.0008 15.8 6.4 39 14-53 18-62 (267)
286 pfam01861 DUF43 Protein of unk 38.7 32 0.00081 15.8 4.4 51 2-53 68-119 (243)
287 pfam00201 UDPGT UDP-glucoronos 38.5 32 0.00082 15.7 7.6 58 72-129 359-418 (501)
288 TIGR00854 pts-sorbose PTS syst 38.5 32 0.00082 15.7 4.8 103 2-106 27-148 (152)
289 cd03801 GT1_YqgM_like This fam 38.3 32 0.00082 15.7 4.9 45 71-119 296-340 (374)
290 pfam02254 TrkA_N TrkA-N domain 38.0 33 0.00083 15.7 9.9 90 3-101 22-113 (115)
291 PRK12315 1-deoxy-D-xylulose-5- 37.7 33 0.00084 15.7 4.9 11 101-111 497-507 (581)
292 pfam00117 GATase Glutamine ami 37.5 33 0.00085 15.6 4.5 74 5-80 1-77 (187)
293 PRK08853 DNA polymerase III su 37.3 33 0.00085 15.6 3.9 73 47-123 120-196 (717)
294 COG2236 Predicted phosphoribos 37.2 23 0.00059 16.6 2.0 21 2-22 88-108 (192)
295 TIGR01127 ilvA_1Cterm threonin 36.9 34 0.00087 15.6 7.5 75 15-96 109-196 (381)
296 PRK07414 cob(I)yrinic acid a,c 36.9 34 0.00087 15.6 5.6 49 41-93 111-166 (178)
297 PRK13124 consensus 36.8 34 0.00087 15.6 6.5 30 72-102 193-222 (257)
298 pfam06925 MGDG_synth Monogalac 36.7 34 0.00087 15.6 6.5 65 36-103 79-144 (169)
299 TIGR01182 eda 2-dehydro-3-deox 36.7 34 0.00087 15.6 9.2 88 20-113 4-98 (205)
300 PRK03372 ppnK inorganic polyph 36.7 34 0.00087 15.6 6.8 100 2-120 5-125 (303)
301 TIGR02254 YjjG/YfnB HAD superf 36.3 35 0.00088 15.5 4.4 85 19-104 113-206 (233)
302 cd03795 GT1_like_4 This family 36.3 35 0.00088 15.5 5.1 47 72-121 287-333 (357)
303 PRK10703 DNA-binding transcrip 36.3 35 0.00089 15.5 6.9 39 13-52 77-121 (335)
304 cd06315 PBP1_ABC_sugar_binding 36.3 35 0.00089 15.5 8.5 24 75-99 218-241 (280)
305 PRK00455 pyrE orotate phosphor 36.1 35 0.00089 15.5 2.9 10 60-69 128-137 (200)
306 PRK13835 conjugal transfer pro 36.0 35 0.0009 15.5 3.7 31 3-33 59-89 (144)
307 PRK13174 consensus 35.8 35 0.0009 15.5 4.1 38 1-38 1-38 (212)
308 TIGR03499 FlhF flagellar biosy 35.8 35 0.0009 15.5 6.0 27 27-53 4-30 (282)
309 COG4122 Predicted O-methyltran 35.4 36 0.00092 15.4 7.4 63 3-66 86-152 (219)
310 cd07022 S49_Sppa_36K_type Sign 35.4 36 0.00092 15.4 7.3 49 33-83 29-82 (214)
311 PRK09449 nucleotidase; Provisi 35.0 36 0.00093 15.4 4.6 23 82-104 175-197 (225)
312 COG1411 Uncharacterized protei 35.0 36 0.00093 15.4 6.4 70 31-103 136-210 (229)
313 PRK09140 2-dehydro-3-deoxy-6-p 34.9 37 0.00093 15.4 11.9 90 19-112 5-99 (206)
314 TIGR01744 XPRTase xanthine pho 34.6 33 0.00084 15.7 2.4 40 2-41 118-168 (191)
315 COG2109 BtuR ATP:corrinoid ade 34.6 37 0.00094 15.4 6.0 56 36-95 113-175 (198)
316 TIGR00735 hisF imidazoleglycer 34.5 37 0.00095 15.3 3.8 70 32-102 210-286 (312)
317 cd03814 GT1_like_2 This family 34.2 38 0.00096 15.3 4.8 44 72-119 288-331 (364)
318 PRK13134 consensus 33.9 38 0.00097 15.3 5.6 34 70-103 91-130 (257)
319 cd01572 QPRTase Quinolinate ph 33.8 38 0.00097 15.3 9.3 64 29-100 187-251 (268)
320 PRK12724 flagellar biosynthesi 33.8 38 0.00097 15.3 8.5 95 14-109 268-373 (432)
321 COG0014 ProA Gamma-glutamyl ph 33.6 38 0.00098 15.3 6.1 85 9-104 154-253 (417)
322 PRK00654 glgA glycogen synthas 33.2 39 0.001 15.2 8.8 106 12-123 310-442 (476)
323 pfam02662 FlpD Methyl-viologen 33.1 39 0.001 15.2 5.3 51 53-103 8-59 (124)
324 COG0616 SppA Periplasmic serin 33.0 39 0.001 15.2 7.1 68 35-106 86-159 (317)
325 PRK00278 trpC indole-3-glycero 32.9 40 0.001 15.2 11.3 88 13-103 148-240 (261)
326 PRK00748 1-(5-phosphoribosyl)- 32.9 40 0.001 15.2 8.7 78 35-115 148-239 (241)
327 TIGR00706 SppA_dom signal pept 32.8 40 0.001 15.2 4.9 72 33-106 30-107 (224)
328 cd05013 SIS_RpiR RpiR-like pro 32.4 40 0.001 15.1 7.5 80 9-90 23-103 (139)
329 cd05844 GT1_like_7 Glycosyltra 32.2 41 0.001 15.1 10.1 108 3-120 221-336 (367)
330 PRK13228 consensus 32.1 41 0.001 15.1 5.7 20 7-26 20-39 (232)
331 cd03115 SRP The signal recogni 32.1 41 0.001 15.1 8.2 95 12-107 42-151 (173)
332 PRK11303 DNA-binding transcrip 31.7 41 0.0011 15.1 7.3 67 10-81 73-148 (330)
333 PRK12723 flagellar biosynthesi 31.5 42 0.0011 15.1 10.7 97 12-108 220-325 (388)
334 cd03412 CbiK_N Anaerobic cobal 31.4 42 0.0011 15.0 4.4 41 16-59 43-84 (127)
335 TIGR00407 proA gamma-glutamyl 31.2 42 0.0011 15.0 4.8 60 11-78 146-215 (415)
336 COG0297 GlgA Glycogen synthase 31.1 42 0.0011 15.0 3.9 105 15-123 314-445 (487)
337 TIGR00623 sula cell division i 30.6 36 0.00093 15.4 2.1 105 4-110 35-152 (168)
338 TIGR01990 bPGM beta-phosphoglu 30.6 43 0.0011 15.0 5.2 96 14-117 48-159 (190)
339 pfam01645 Glu_synthase Conserv 30.3 44 0.0011 14.9 5.8 72 30-101 210-300 (367)
340 KOG1601 consensus 30.3 12 0.0003 18.3 -0.4 101 5-106 19-125 (340)
341 PRK07428 nicotinate-nucleotide 30.2 44 0.0011 14.9 10.0 80 17-101 183-266 (285)
342 cd06282 PBP1_GntR_like_2 Ligan 30.1 44 0.0011 14.9 9.3 92 10-106 11-127 (266)
343 COG2200 Rtn c-di-GMP phosphodi 29.9 44 0.0011 14.9 9.3 101 13-115 137-250 (256)
344 PRK12402 replication factor C 29.9 44 0.0011 14.9 4.0 71 47-121 126-200 (337)
345 PRK05973 replicative DNA helic 29.8 45 0.0011 14.9 4.2 83 14-98 26-117 (237)
346 cd03813 GT1_like_3 This family 29.6 45 0.0011 14.9 10.8 107 3-119 326-441 (475)
347 cd03421 SirA_like_N SirA_like_ 29.5 45 0.0011 14.8 3.9 31 4-34 28-58 (67)
348 pfam03830 PTSIIB_sorb PTS syst 29.5 45 0.0012 14.8 4.3 43 2-45 27-72 (151)
349 cd06319 PBP1_ABC_sugar_binding 29.3 46 0.0012 14.8 6.2 15 83-97 218-232 (277)
350 pfam10672 Methyltrans_SAM S-ad 29.1 46 0.0012 14.8 7.9 52 2-53 147-202 (286)
351 PRK04759 consensus 29.0 46 0.0012 14.8 6.7 100 2-120 6-120 (294)
352 PRK07589 ornithine cyclodeamin 28.9 46 0.0012 14.8 5.9 57 1-58 154-218 (346)
353 PRK07003 DNA polymerase III su 28.8 46 0.0012 14.8 5.6 74 46-123 119-196 (816)
354 cd04468 S1_eIF5A S1_eIF5A: Euk 28.7 47 0.0012 14.8 2.9 35 52-87 27-62 (69)
355 cd07014 S49_SppA Signal peptid 28.6 47 0.0012 14.8 7.3 73 32-106 25-102 (177)
356 cd02809 alpha_hydroxyacid_oxid 28.6 47 0.0012 14.8 7.6 46 60-106 214-260 (299)
357 cd01522 RHOD_1 Member of the R 28.5 47 0.0012 14.7 6.5 63 33-98 2-90 (117)
358 cd02930 DCR_FMN 2,4-dienoyl-Co 28.4 47 0.0012 14.7 6.9 41 61-104 266-308 (353)
359 COG0352 ThiE Thiamine monophos 28.3 47 0.0012 14.7 8.2 66 30-101 110-184 (211)
360 COG0496 SurE Predicted acid ph 28.2 34 0.00086 15.6 1.6 81 3-85 2-128 (252)
361 cd00384 ALAD_PBGS Porphobilino 28.2 48 0.0012 14.7 2.5 12 93-104 230-241 (314)
362 TIGR00336 pyrE orotate phospho 27.9 48 0.0012 14.7 3.9 28 2-29 118-148 (187)
363 TIGR01244 TIGR01244 conserved 27.6 44 0.0011 14.9 2.1 30 82-111 42-72 (136)
364 pfam07755 DUF1611 Protein of u 27.6 18 0.00045 17.3 0.1 53 2-54 114-171 (302)
365 cd04729 NanE N-acetylmannosami 27.4 49 0.0013 14.6 10.7 85 14-103 112-206 (219)
366 PRK07024 short chain dehydroge 27.3 49 0.0013 14.6 7.4 80 1-82 2-85 (256)
367 PRK05993 short chain dehydroge 27.2 50 0.0013 14.6 7.2 65 2-67 5-70 (277)
368 cd01532 4RHOD_Repeat_1 Member 27.2 50 0.0013 14.6 3.2 54 45-99 8-79 (92)
369 PRK07455 keto-hydroxyglutarate 27.2 50 0.0013 14.6 11.8 93 16-113 5-101 (210)
370 cd02929 TMADH_HD_FMN Trimethyl 27.2 50 0.0013 14.6 3.8 40 60-102 278-317 (370)
371 KOG1680 consensus 27.2 40 0.001 15.1 1.8 37 48-84 46-91 (290)
372 PRK13809 orotate phosphoribosy 27.1 50 0.0013 14.6 2.8 62 49-115 122-186 (206)
373 KOG0053 consensus 26.7 51 0.0013 14.5 6.9 92 12-106 128-226 (409)
374 PRK05444 1-deoxy-D-xylulose-5- 26.6 51 0.0013 14.5 3.7 15 25-39 395-409 (576)
375 PRK07764 DNA polymerase III su 26.4 51 0.0013 14.5 4.3 72 47-122 121-196 (775)
376 cd04180 UGPase_euk_like Eukary 26.3 52 0.0013 14.5 4.1 46 50-95 21-74 (266)
377 cd01141 TroA_d Periplasmic bin 25.9 52 0.0013 14.5 5.4 44 45-93 68-111 (186)
378 cd03799 GT1_amsK_like This is 25.9 52 0.0013 14.5 5.7 45 72-120 283-327 (355)
379 cd03823 GT1_ExpE7_like This fa 25.8 53 0.0013 14.5 11.2 48 72-123 285-332 (359)
380 pfam06792 UPF0261 Uncharacteri 25.7 53 0.0013 14.4 5.3 43 14-57 200-245 (403)
381 PRK07579 hypothetical protein; 25.6 53 0.0014 14.4 2.8 25 1-25 1-25 (245)
382 TIGR01967 DEAH_box_HrpA ATP-de 25.4 41 0.001 15.1 1.6 46 47-94 182-233 (1320)
383 PRK05567 inositol-5'-monophosp 25.3 54 0.0014 14.4 7.0 61 38-102 233-296 (486)
384 cd02931 ER_like_FMN Enoate red 25.1 54 0.0014 14.4 3.8 40 60-102 294-333 (382)
385 PRK09283 delta-aminolevulinic 25.0 55 0.0014 14.4 2.4 12 93-104 236-247 (321)
386 cd04949 GT1_gtfA_like This fam 24.9 55 0.0014 14.3 11.0 98 14-121 247-346 (372)
387 PRK11587 putative phosphatase; 24.7 55 0.0014 14.3 5.2 107 6-117 14-151 (218)
388 cd00001 PTS_IIB_man PTS_IIB, P 24.6 55 0.0014 14.3 4.5 43 2-45 26-71 (151)
389 cd02808 GltS_FMN Glutamate syn 24.5 56 0.0014 14.3 5.6 72 30-101 222-312 (392)
390 cd01536 PBP1_ABC_sugar_binding 24.4 56 0.0014 14.3 6.6 39 14-53 18-62 (267)
391 PRK01231 ppnK inorganic polyph 24.4 56 0.0014 14.3 7.3 100 2-120 5-118 (296)
392 pfam00490 ALAD Delta-aminolevu 24.3 56 0.0014 14.3 2.3 13 93-105 238-250 (322)
393 cd06331 PBP1_AmiC_like Type I 24.3 56 0.0014 14.3 13.0 84 2-88 133-228 (333)
394 COG0021 TktA Transketolase [Ca 24.3 56 0.0014 14.3 4.6 76 3-78 180-287 (663)
395 cd00452 KDPG_aldolase KDPG and 24.2 56 0.0014 14.3 7.2 94 6-106 10-127 (190)
396 PRK02399 hypothetical protein; 24.2 57 0.0014 14.3 5.3 43 14-57 200-245 (407)
397 TIGR02463 MPGP_rel mannosyl-3- 24.1 51 0.0013 14.5 1.9 31 72-102 30-62 (224)
398 KOG2550 consensus 24.1 57 0.0014 14.3 5.8 62 34-99 252-316 (503)
399 pfam09001 DUF1890 Domain of un 24.1 57 0.0014 14.3 9.5 99 13-115 15-136 (138)
400 TIGR02855 spore_yabG sporulati 24.1 57 0.0014 14.3 6.7 98 3-104 115-235 (292)
401 cd00480 malate_synt Malate syn 24.1 57 0.0014 14.3 3.6 22 80-101 68-89 (511)
402 PRK06015 keto-hydroxyglutarate 23.8 57 0.0015 14.2 12.2 96 14-114 5-104 (212)
403 PRK00994 F420-dependent methyl 23.8 57 0.0015 14.2 8.6 86 16-106 22-117 (276)
404 TIGR03015 pepcterm_ATPase puta 23.7 58 0.0015 14.2 9.7 115 4-120 75-207 (269)
405 PRK13148 consensus 23.6 58 0.0015 14.2 5.1 36 1-36 1-38 (225)
406 TIGR02483 PFK_mixed phosphofru 23.5 58 0.0015 14.2 2.2 106 15-120 96-225 (339)
407 KOG1618 consensus 23.4 59 0.0015 14.2 3.5 39 57-95 54-92 (389)
408 TIGR01233 lacG 6-phospho-beta- 23.4 30 0.00077 15.9 0.6 66 44-112 334-405 (473)
409 PRK03708 ppnK inorganic polyph 23.3 59 0.0015 14.2 7.8 91 14-119 18-111 (278)
410 cd06347 PBP1_ABC_ligand_bindin 23.2 59 0.0015 14.2 12.3 102 2-106 136-249 (334)
411 PRK10433 putative RNA methyltr 23.2 58 0.0015 14.2 2.0 16 11-26 13-28 (228)
412 cd01844 SGNH_hydrolase_like_6 22.9 60 0.0015 14.1 6.0 62 21-84 27-103 (177)
413 PRK13523 NADPH dehydrogenase N 22.9 60 0.0015 14.1 6.5 39 60-101 264-302 (337)
414 pfam01380 SIS SIS domain. SIS 22.9 60 0.0015 14.1 5.9 94 9-109 15-110 (131)
415 cd03825 GT1_wcfI_like This fam 22.9 60 0.0015 14.1 5.6 44 72-119 286-329 (365)
416 pfam01993 MTD methylene-5,6,7, 22.8 60 0.0015 14.1 8.6 86 16-106 21-117 (276)
417 TIGR02251 HIF-SF_euk Dullard-l 22.8 39 0.001 15.2 1.1 11 57-67 67-77 (193)
418 PRK08691 DNA polymerase III su 22.7 61 0.0015 14.1 3.8 73 47-123 120-196 (704)
419 COG1748 LYS9 Saccharopine dehy 22.7 61 0.0015 14.1 9.5 95 1-102 1-97 (389)
420 TIGR01214 rmlD dTDP-4-dehydror 22.6 61 0.0015 14.1 5.0 49 3-51 1-65 (317)
421 PRK10217 dTDP-glucose 4,6-dehy 22.6 61 0.0016 14.1 6.1 32 1-32 1-33 (355)
422 cd06345 PBP1_ABC_ligand_bindin 22.5 61 0.0016 14.1 11.1 90 2-94 145-245 (344)
423 pfam04131 NanE Putative N-acet 22.5 61 0.0016 14.1 10.5 89 16-110 83-181 (192)
424 PRK05703 flhF flagellar biosyn 22.4 61 0.0016 14.1 11.7 96 14-109 256-359 (412)
425 TIGR01929 menB naphthoate synt 22.4 41 0.001 15.1 1.1 41 60-100 34-75 (278)
426 cd05212 NAD_bind_m-THF_DH_Cycl 22.4 61 0.0016 14.0 5.5 58 2-61 29-86 (140)
427 TIGR00730 TIGR00730 conserved 22.4 61 0.0016 14.0 3.6 49 54-102 127-182 (205)
428 cd07019 S49_SppA_1 Signal pept 22.2 62 0.0016 14.0 7.7 49 33-82 25-78 (211)
429 COG1059 Thermostable 8-oxoguan 22.2 62 0.0016 14.0 2.9 41 75-117 43-83 (210)
430 cd03811 GT1_WabH_like This fam 22.1 62 0.0016 14.0 10.6 45 72-120 285-329 (353)
431 PRK07105 pyridoxamine kinase; 22.0 62 0.0016 14.0 3.4 29 1-29 4-36 (284)
432 PRK13136 consensus 21.9 63 0.0016 14.0 6.4 47 60-109 77-128 (253)
433 cd01537 PBP1_Repressors_Sugar_ 21.8 63 0.0016 14.0 9.2 63 13-80 17-85 (264)
434 PRK13811 orotate phosphoribosy 21.8 63 0.0016 14.0 2.3 19 79-97 114-132 (170)
435 cd00331 IGPS Indole-3-glycerol 21.8 63 0.0016 14.0 11.6 87 13-102 109-200 (217)
436 pfam03060 NPD 2-nitropropane d 21.5 64 0.0016 13.9 10.5 84 16-101 128-219 (330)
437 pfam00656 Peptidase_C14 Caspas 21.4 64 0.0016 13.9 5.1 40 12-51 22-67 (230)
438 PRK06737 acetolactate synthase 21.3 63 0.0016 14.0 1.9 31 5-35 7-37 (76)
439 pfam01408 GFO_IDH_MocA Oxidore 21.3 64 0.0016 13.9 5.3 100 4-114 3-106 (120)
440 cd06335 PBP1_ABC_ligand_bindin 21.2 65 0.0017 13.9 11.5 92 2-96 139-241 (347)
441 TIGR00232 tktlase_bact transke 21.2 65 0.0017 13.9 4.6 84 13-97 193-301 (675)
442 pfam00478 IMPDH IMP dehydrogen 21.2 65 0.0017 13.9 6.0 58 40-101 230-290 (467)
443 cd02803 OYE_like_FMN_family Ol 21.0 66 0.0017 13.9 7.6 40 60-102 270-309 (327)
444 pfam10087 DUF2325 Uncharacteri 21.0 66 0.0017 13.9 8.3 87 3-93 1-91 (96)
445 cd04740 DHOD_1B_like Dihydroor 20.9 66 0.0017 13.9 3.8 12 90-101 173-184 (296)
446 PRK06823 ornithine cyclodeamin 20.7 66 0.0017 13.8 5.7 40 2-41 154-193 (315)
447 TIGR01460 HAD-SF-IIA HAD-super 20.7 67 0.0017 13.8 2.9 28 57-84 18-45 (304)
448 PRK09213 purine operon repress 20.7 67 0.0017 13.8 4.1 17 14-30 44-60 (274)
449 PRK06995 flhF flagellar biosyn 20.6 67 0.0017 13.8 9.4 97 14-111 222-327 (404)
450 TIGR00110 ilvD dihydroxy-acid 20.5 52 0.0013 14.5 1.3 31 47-84 97-131 (601)
451 COG1737 RpiR Transcriptional r 20.5 67 0.0017 13.8 7.8 82 9-92 140-222 (281)
452 PRK13805 bifunctional acetalde 20.4 67 0.0017 13.8 6.3 51 1-52 482-545 (862)
453 CHL00194 ycf39 Ycf39; Provisio 20.4 68 0.0017 13.8 10.2 55 3-58 2-56 (319)
454 PRK11199 tyrA bifunctional cho 20.3 68 0.0017 13.8 6.0 115 2-117 99-255 (374)
455 PRK07322 adenine phosphoribosy 20.3 68 0.0017 13.8 4.2 18 7-24 32-49 (178)
456 PRK13942 protein-L-isoaspartat 20.2 68 0.0017 13.8 2.9 62 3-67 103-167 (214)
457 cd02065 B12-binding_like B12 b 20.2 68 0.0017 13.8 6.4 75 12-88 14-94 (125)
458 cd01524 RHOD_Pyr_redox Member 20.1 69 0.0017 13.8 4.5 53 48-102 13-81 (90)
459 pfam00497 SBP_bac_3 Bacterial 20.0 69 0.0018 13.8 6.0 28 25-53 132-159 (224)
460 pfam02606 LpxK Tetraacyldisacc 20.0 69 0.0018 13.8 4.4 40 74-113 221-267 (318)
461 COG4594 FecB ABC-type Fe3+-cit 20.0 69 0.0018 13.8 3.4 82 2-94 69-153 (310)
No 1
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=100.00 E-value=3.9e-36 Score=235.72 Aligned_cols=128 Identities=20% Similarity=0.340 Sum_probs=119.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC--CCHHHHHHHHCCCCCCCEEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078998--773899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~--~~~l~~~ir~~~~~~~~pii~ 79 (133)
.+||||||++..|++++-.|++.||+|.+|.||.+|..++. +..|||||+||++|| |+|||+++|..+.++++||||
T Consensus 3 ~~iLvVEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~-E~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPIIM 81 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERLPDLILLDWMLPGTSGIELARRLRREPETRAIPIIM 81 (226)
T ss_pred CEEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEE
T ss_conf 72567708268999999984168946998079799999986-07998899614789975699998734763314888177
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 963899899999997699889976989899999999999999999999877
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l 130 (133)
|||.+++++.++++++|||||++||||+.+|.++|+.++++..-......+
T Consensus 82 LTARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLRR~~P~~~~~~i 132 (226)
T TIGR02154 82 LTARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLRRIRPELSDEVI 132 (226)
T ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHCCEE
T ss_conf 405556000113113688750367886588999999998316712420201
No 2
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.97 E-value=4.7e-29 Score=193.50 Aligned_cols=119 Identities=26% Similarity=0.345 Sum_probs=111.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEE
Q ss_conf 77999739989999999999988989999999799999997179994899707899877--3899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~ 79 (133)
.|||||||++.+|..++..|+..||+|..|.||++|++.+.+ ..||+|++|++||||. ++|+.+|..+.+.++|||+
T Consensus 3 ~rILiVdD~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~-~~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVIv 81 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICER-EQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVM 81 (457)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 719999498999999999998789999998999999999971-8999899928779999999999996598889984999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 963899899999997699889976989899999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
+|+.++.+...+|+++||+|||.||++..+|..+++...+.+
T Consensus 82 lTa~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l~r~~ 123 (457)
T PRK09581 82 VTALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 978999999999986488789989999899999999999889
No 3
>PRK10693 response regulator of RpoS; Provisional
Probab=99.96 E-value=3.4e-28 Score=188.40 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=104.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
+|||||||++.+|..++.+|+.+||+|..|.||++|++.+.+ ..||+||+||.||+| +++++++|+. .+++|||+
T Consensus 8 kkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~-~~pDLIi~Dl~MP~mdGlell~~lr~~--~~~~PVIv 84 (337)
T PRK10693 8 KQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRMNGLKFVEHLRNR--GDQTPVLV 84 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCEEEE
T ss_conf 989999499999999999999789999998999999999865-899999996899999989999999985--89964999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf 96389989999999769988997698-98999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELPQ 119 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~-~~~~L~~~i~~~~~ 119 (133)
+|+.++.++..+|+++||+|||+||+ +..+|.+++.+.+.
T Consensus 85 lTa~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~ 125 (337)
T PRK10693 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY 125 (337)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98689999999999749958997896999999999998751
No 4
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.96 E-value=7.9e-28 Score=186.21 Aligned_cols=127 Identities=23% Similarity=0.365 Sum_probs=115.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
++|||||||++.+|..++..|+..||+|.+|.||.+|++.+.+ ..||+|++|+.||+| .++++++|+. .+++|||
T Consensus 4 ~~rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~-~~~DlvllDi~mP~~~Glell~~ir~~--~p~~pvI 80 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-IHPDVVLMDIRMPEMDGIKALKEMRSH--ETRTPVI 80 (457)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHC--CCCCCEE
T ss_conf 9928998399999999999999779989998999999999866-898999982879999999999999820--9899389
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9963899899999997699889976989899999999999999999999877
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l 130 (133)
++|++++.+..++|++.||.|||.|||+.++|...++++++.++...+++.+
T Consensus 81 vlTa~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~~~~l~~~~~~l 132 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHL 132 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9968999899999997596632569999999999999999998877777666
No 5
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.96 E-value=7.9e-28 Score=186.21 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=107.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEE
Q ss_conf 7999739989999999999988989999999799999997179994899707899877--38999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~l 80 (133)
|||+||||+.|+++++.+|+..|++|..|.||.||++.+.++. ||+|+||++||+|+ +.+++||+.+...++|||.+
T Consensus 670 rVLvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~~-fDLILMDiqMP~MDG~eATr~IR~~~~~~~~PIIAl 748 (920)
T PRK11107 670 TVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRP-FDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAV 748 (920)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCC-CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 4999848899999999999984988999899999999974799-978998899999989999999981867898959999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 63899899999997699889976989899999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~ 118 (133)
||+...++..+|+++|.+|||.||++...|...+.+..
T Consensus 749 TA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~ 786 (920)
T PRK11107 749 TAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWK 786 (920)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf 79989899999997799938728799999999999867
No 6
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.96 E-value=8.7e-28 Score=185.95 Aligned_cols=121 Identities=21% Similarity=0.362 Sum_probs=112.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
.+||||||||+..+..++..|+..||+|..|.||.+|++.+.+ ..||+||+|++||++ +++|+++|+....+++|||
T Consensus 2 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~-~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII 80 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 9719999599999999999999779999998999999999852-899899997899887633587887750246897589
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 99638998999999976998899769898999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
|+|+.++.++...++++||+||++|||+.++|..+++.++++..
T Consensus 81 ~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~~ 124 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 (229)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99556665779999876987652089998999999999971237
No 7
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.96 E-value=1.1e-27 Score=185.43 Aligned_cols=118 Identities=26% Similarity=0.381 Sum_probs=110.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 799973998999999999998898-999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~-~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
|||||||++.+|+.++.+|+..|| +|.+|.||.+|++.+.++ .||+|++||+||++ +++++.+|+....+.+|||+
T Consensus 7 rILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~-~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~Pii~ 85 (129)
T PRK10610 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-GFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85 (129)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 9999979899999999999986997899989999999999858-999999818999998999999998577778996899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 963899899999997699889976989899999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
+|+.++.+...+|+++||++|+.|||+.++|..++++++++.
T Consensus 86 ~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r~ 127 (129)
T PRK10610 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 988689999999998699889989899999999999999763
No 8
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.96 E-value=1.4e-27 Score=184.80 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=110.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEE
Q ss_conf 77999739989999999999988989999999799999997179994899707899877--3899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~ 79 (133)
.+||||||++..|..++..|+..||+|.+|.||.+|++.+.+ ..||+||+|++||||. ++++++|.. .+++|||+
T Consensus 4 ~kILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~-~~~dlvl~Di~mP~~~Gl~ll~~lr~~--~~~~pvIv 80 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGLALLKQIKQR--HPMLPVII 80 (469)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHHC--CCCCCEEE
T ss_conf 979999498999999999998779989998999999999866-999999878999998999999999842--98997899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~ 126 (133)
+|++++.+..++|+++||+|||.|||+.++|..++++++..++....
T Consensus 81 iT~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~~~~~~~~ 127 (469)
T PRK10923 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 (469)
T ss_pred EECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999989999998557044300889999999999999999999865
No 9
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.95 E-value=5.4e-27 Score=181.23 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=108.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEE
Q ss_conf 77999739989999999999988989999999799999997179994899707899877--3899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~ 79 (133)
.+|||||||+.++++++.+|+..|++|..|.||.||++.+.++ .||+|++|++||+|+ +++++||+. ...+|||.
T Consensus 825 lrILVVEDNpINq~VL~~~L~~LG~~V~~A~NG~EALe~l~~~-~fDLILMDIqMPvMDGyEaTr~IRe~--~~~iPIIA 901 (947)
T PRK10841 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-HIDIVLSDVNMPNMDGYRLTQRIRQL--GLTLPVIG 901 (947)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHCC--CCCCEEEE
T ss_conf 8899990789999999999997699999989999999997569-98989970888998099999999808--98494999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+||+...++..+|+++|.++||.||++.+.|...+.++..+.+
T Consensus 902 LTAnA~~edkerCleAGMDdyLsKPV~l~~L~~vL~~Y~~~~r 944 (947)
T PRK10841 902 VTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERVR 944 (947)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 9389998999999987999999798979999999999987764
No 10
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.95 E-value=2.1e-27 Score=183.68 Aligned_cols=117 Identities=24% Similarity=0.327 Sum_probs=107.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
|+|||+|||++..+..++..|+..||+|..|.||++|++.+. + .||+||+|++||++ +++|+++|+. .++|||
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~-~~DlvilDi~LP~~dG~~l~~~iR~~---~~~PII 75 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D-SIDLLLLDVMMPKKNGIDTLKALRQT---HQTPVI 75 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-C-CCCEEEEECCCCCCCCCCCCCEEECC---CCCCEE
T ss_conf 988999969899999999999888999999899999999964-8-98999991899988867230124407---888789
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 99638998999999976998899769898999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
++|+.++.++...++++||+|||.|||+.++|..+++.++++.+
T Consensus 76 ~lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~ 119 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 (232)
T ss_pred EEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 98055676889999976975763389998999999999976154
No 11
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.95 E-value=4.1e-27 Score=181.93 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=109.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
|+|||+|||++..+..++..|+..||+|..|.+|.+|++.+.+ ..||+||+|++|||+ +++|+++|+. .++|||
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~-~~~DlvilDi~LP~~dG~~l~~~iR~~---~~~PiI 76 (240)
T PRK10701 1 MNTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILR-EQPDLVLLDIMLPGKDGMTICRDLRPK---WSGPIV 76 (240)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCCEEEEECCCC---CCCCEE
T ss_conf 9989999799999999999998879999998999999999861-799999992899767887876311025---898789
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9963899899999997699889976989899999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~ 124 (133)
++|+.++..+.+.++++||+|||.|||+..+|..+++..+++....
T Consensus 77 ~lta~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr~~~~ 122 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 (240)
T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9940575788999997688776417998799999999999653254
No 12
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.95 E-value=5e-27 Score=181.43 Aligned_cols=118 Identities=25% Similarity=0.380 Sum_probs=108.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
|++||+|||++..+..++..|+..||+|..|.+|++|+..+.. ..||+||+|++||++ +++|+.+|+. ..+|||
T Consensus 1 M~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~-~~~DlviLDi~lP~~dG~~l~~~iR~~---~~~pII 76 (225)
T PRK10529 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCEEEEECC---CCCCEE
T ss_conf 9989999798999999999999889999997999999998611-799899980788888876331000127---998789
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 99638998999999976998899769898999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
++|+.++.++...++++||+|||.|||+.++|..+++.++++..
T Consensus 77 ~lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr~~ 120 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 (225)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99546898999999976987654078545999999999971403
No 13
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.95 E-value=1.8e-26 Score=178.13 Aligned_cols=119 Identities=22% Similarity=0.300 Sum_probs=109.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.|||||||++..+..++..|+..||+|..|.||.+|++.+.+ ..||+||+|++||++ +++|+++|+. .+.+|||+
T Consensus 6 ~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~-~~~DlvilDi~lp~~dG~~l~~~iR~~--~~~~pII~ 82 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-ESFHLMVLDLMLPGEDGLSICRRLRSQ--NNPTPIIM 82 (239)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCHHHHHHHHH--CCCCCEEE
T ss_conf 789999099999999999999889999998999999999975-899899987899888873467778750--57877899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
+|+.++.++..+++++||+|||+|||+.++|..+++.+++++..
T Consensus 83 LTa~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR~~~ 126 (239)
T PRK09468 83 LTAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRQAP 126 (239)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 94667878999999769868855899989999999999863234
No 14
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.95 E-value=7.4e-27 Score=180.41 Aligned_cols=117 Identities=22% Similarity=0.381 Sum_probs=108.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
+|||||||++..++.++..|+..||+|..|.+|.+|++.+.. ..||+||+|++||++ +++|+++|+. .++||||
T Consensus 7 ~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~-~~~DlviLDi~LP~~dG~~l~~~iR~~---~~~PII~ 82 (240)
T CHL00148 7 EKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQ-EQPDLVILDVMMPKLDGYGVCQEIRKE---SDVPIIM 82 (240)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCCEEEECCCCC---CCCCEEE
T ss_conf 829999398999999999999789999998999999999974-799999997999988866305414037---9954899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+|+.++.++...++++||+|||+|||+.++|..+++.++++.+
T Consensus 83 LTa~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allrr~~ 125 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRVN 125 (240)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 8167898999999976997895278447999999999986630
No 15
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.95 E-value=3e-26 Score=176.77 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=107.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEE
Q ss_conf 7999739989999999999988989999999799999997179994899707899877--38999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~l 80 (133)
+||||||++..|..++.+|+..||+|.+|.||.+|++.+.++ .||+|++|+.||++. ++++++|.. .+++|||++
T Consensus 7 ~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~-~~DlvllD~~mp~~~Gl~lL~~l~~~--~p~~pvIvi 83 (441)
T PRK10365 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ-VFDLVLCDVRMAEMDGIATLKEIKAL--NPAIPVLIM 83 (441)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHHH--CCCCCEEEE
T ss_conf 599983989999999999997799899989999999998648-99999988999999899999999842--989828999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6389989999999769988997698989999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
||+++.+..++|++.||.|||.|||+.+.|...+.+.+...+.
T Consensus 84 T~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~~~~~ 126 (441)
T PRK10365 84 TAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 (441)
T ss_pred ECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 6999989999999828512340788899999999999999987
No 16
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.95 E-value=1.8e-26 Score=178.05 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=108.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
|||+|||++..+..++..|+..||+|..|.+|.+|++.+.+ ..||+||+|++||++ +++|+++|+. .+.+|||++
T Consensus 2 kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~-~~~DlvilDi~lP~~dG~~l~~~iR~~--~~~~PII~l 78 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDGRDILREWREK--GQREPVLIL 78 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHH--CCCCCEEEE
T ss_conf 89999389999999999999879999998999999999862-896999997999999856310104652--788878998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
|+.++.++..+++++||+||+.|||+.++|..+++.++++..
T Consensus 79 ta~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr~~ 120 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 (219)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 068999999999976998886889767999999999961154
No 17
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.95 E-value=3.1e-26 Score=176.75 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=109.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.|||||||++..+..++..|+..||+|..|.||.+|++.+.+ ..||+||+|++||++ +++|+++|.. .+++|||+
T Consensus 4 ~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlvilDi~LP~~~G~~l~~~iR~~--~~~~pII~ 80 (229)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-QPPDLVILDVGLPDISGFELCRQLRAF--HPALPVIF 80 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHH--CCCCEEEE
T ss_conf 999999699999999999999889999998999999999971-899899973889998768899999970--89972999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+|+.++.++...++++||+||+.|||+.++|..+++.++++.+
T Consensus 81 lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR~~ 123 (229)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVK 123 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 8367898999999975998773087428999999999997643
No 18
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.95 E-value=2.8e-26 Score=177.01 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=108.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
|||+|||++..++.++..|+..||+|..|.||.+|++.+.+ ..||+|++|++||++ +++|+++|+. .+.+|||++
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~-~~~DlvilDi~lP~~~G~~l~~~iR~~--~~~~PII~L 78 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNGWDIVRMLRSA--NKGMPILLL 78 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHH--CCCCEEEEE
T ss_conf 89999399999999999998789999998999999999851-899999988999999872043567761--679609999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
|+.++.++..+++++||+||+.|||+.++|..+++.++++..
T Consensus 79 ta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~~ 120 (226)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 (226)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 445898899999976996886368767999999999966266
No 19
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.94 E-value=5.4e-26 Score=175.26 Aligned_cols=116 Identities=16% Similarity=0.293 Sum_probs=106.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
|||+|||++..++.++..|+..||+|..|.||.+|++.+.++ .||+|++|++||++ .++|+++|+. .++|||++
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~-~~DlvilDi~lP~~dG~~l~~~iR~~---~~~pII~l 77 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD-DYALIILDIMLPGMDGWQILQTLRTA---KQTPVICL 77 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHHC---CCCCEEEE
T ss_conf 899996989999999999998899999989999999998528-99999984999873689999999856---88648999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
|+.++.++..+++++||+||+.|||+.++|..+++.++++..
T Consensus 78 ta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~~ 119 (223)
T PRK11517 78 TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 (223)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 565565789999983987762089778999999999964145
No 20
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.94 E-value=3.9e-26 Score=176.12 Aligned_cols=109 Identities=34% Similarity=0.525 Sum_probs=101.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 99973998999999999998898999999979999999717999489970789987--7389999614348897399996
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLL 81 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT 81 (133)
||||||++.+|..++..|+.+||+|.+|.||++|++.+.++ .||+|++|++||++ +++++++|++ .+++|||++|
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~-~~dlvi~Di~mP~~dG~el~~~ir~~--~~~~piI~~T 77 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEK-RPDLILLDIRMPGMDGLELLRRIRRR--PPTTPVIVLT 77 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHC--CCCCEEEEEE
T ss_conf 09998989999999999998899999989999999999847-99899995368995015799999735--9998099997
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 3899899999997699889976989899999999
Q gi|254780892|r 82 MEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 (133)
Q Consensus 82 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~ 115 (133)
++++.+...+|+++||++|+.|||+.++|..+++
T Consensus 78 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 78 AHGDEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 5089999999997798779949999899998529
No 21
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.94 E-value=1.2e-25 Score=173.23 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=104.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCC-CCEEE
Q ss_conf 77999739989999999999988989999999799999997179994899707899877--3899996143488-97399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGT-DVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~-~~pii 78 (133)
.+|||||||+.|+.+++.+|+.+|++|..|.||.+|++.+.++. ||+|++|++||+|+ +.+++||+..... .+|||
T Consensus 526 lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~-fDLILMDiqMP~MDG~Eatr~IR~~~~~~~~~PII 604 (779)
T PRK11091 526 LNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGE-YDLVLLDIQLPDMTGLDVARELRERYGREDLPPLV 604 (779)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf 81899868899999999999975999999899999999850699-99899828999997899999998425768999279
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
.+||+.-. +..+++++|.+|||.||++.+.|...+.+++..
T Consensus 605 ALTAna~~-d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 605 ALTANVLK-DKQEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEECCCCH-HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCC
T ss_conf 88187417-699999769984751889899999999998464
No 22
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.94 E-value=1.1e-25 Score=173.33 Aligned_cols=121 Identities=19% Similarity=0.334 Sum_probs=108.0
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCE-EEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 799973998999999999998-8989-99999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFND-FGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~-~g~~-v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
|||||||++.++..++.+|+. .||+ |..|.||.+|++.+.+ ..||+||+|++||+| +++++++|+. .+.+|||
T Consensus 6 ~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~-~~pDLvLLDi~LPd~~Glell~~lr~~--~~~~~VI 82 (225)
T PRK10046 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDGRGINLLHELVQA--HYPGDVV 82 (225)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEE
T ss_conf 6999959899999999999728995499998999999999973-599999982898999799999999964--8799889
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~ 126 (133)
++|+.++.+...+|++.||.|||.|||+.+.|..++.++.+.++....
T Consensus 83 ~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~~~~~l~~ 130 (225)
T PRK10046 83 FTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLES 130 (225)
T ss_pred EEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 996899999999999749983102899999999999999999998635
No 23
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.94 E-value=9.1e-26 Score=173.93 Aligned_cols=118 Identities=25% Similarity=0.349 Sum_probs=110.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.+||||||++..+..+...|+..||+|..+.+|.+|++.+... ||+|++|++||++ +++|+++|+. ....+|||+
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~--~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ--PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPIIV 77 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHHHHHHC-CCCCCCEEE
T ss_conf 9899991888999999999987597899978989999997269--9999998899985689999999851-689998899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+|+.++.++.+.++++||+||++|||++.+|..+++.++++..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9668728889999975634233488998999999999967365
No 24
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.94 E-value=2.4e-25 Score=171.44 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=105.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
|++||+||||+..++.++..|+..||+|..|.+|.+|++.+.+ ..||+||+|++||++ +++++.+|.. ..+|+|
T Consensus 1 M~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~-~~~DlvIlDi~lp~~~Gl~~~~~ir~~---~~~pii 76 (241)
T PRK13856 1 MKHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSS-ETVDVVVVDLNLGREDGLEIVRSLATK---SDVPII 76 (241)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHHHCCC---CCCCEE
T ss_conf 9989999698999999999998779999998999999999865-999999996999876613455564036---997369
Q ss_pred EEEC-CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9963-8998999999976998899769898999999999999999
Q gi|254780892|r 79 YLLM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 79 ~lT~-~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
++|+ ..+..+...++++||+|||.|||+.++|..+++.+++++.
T Consensus 77 ilt~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~~ 121 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRP 121 (241)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 997267878999999876998899777677799999999987454
No 25
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.94 E-value=1.5e-25 Score=172.65 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=108.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
+|||+||||+..++.++..|+..||+|..|.||++|++.+.+ ..||+||+|++||++ .++++++|+. .++|||+
T Consensus 3 ~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~-~~~DlvilDi~lp~~~G~el~~~iR~~---~~~piI~ 78 (224)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQN-QHVDLILLDINLPGEDGLMLTRELRSR---STVGIIL 78 (224)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHC---CCCCEEE
T ss_conf 719999199999999999999879999998999999999960-899999988999988766137676304---7855686
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
+|+.++.++..+|+++||+||+.|||+.++|..+++.++++...
T Consensus 79 lta~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allrR~~~ 122 (224)
T PRK10766 79 VTGRTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLWRISL 122 (224)
T ss_pred ECCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 33558989999999849414513999889999999999725244
No 26
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.94 E-value=3.3e-25 Score=170.61 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=104.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.+||||||++.||.+++.+|+..|++|..|.||.||++.+.++ .||+|++|++||+| +|++++||+. ...+|||.
T Consensus 959 l~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~-~fDlILmDi~MP~MDG~e~tr~IR~~--~~~~PIia 1035 (1197)
T PRK09959 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ-HYDLLITDVNMPNMDGFELTRKLREQ--NSSLPIWG 1035 (1197)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHCC--CCCCCEEE
T ss_conf 8799979989999999999998399999989999999997669-99999987978999899999999646--98694899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+|++...++..+|+++|.+|||.||++.+.|...+.+..+
T Consensus 1036 lTA~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~~~~ 1075 (1197)
T PRK09959 1036 LTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 9799999999999976998345188989999999985311
No 27
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-25 Score=171.14 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=107.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHH--HCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCC
Q ss_conf 9779997399899999999999--8898999-9999799999997179994899707899877--389999614348897
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFN--DFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDV 75 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~--~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~ 75 (133)
|.+||||||.+.+|+.++.++. .+|++|. +|.||.+|++.+.+ ..||+||+|++||+|+ ++++.++. ..+++
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-~~pDiviTDI~MP~mdGLdLI~~ike--~~p~~ 77 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKE--QSPDT 77 (475)
T ss_pred CEEEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHH--HCCCC
T ss_conf 9139996672999999998488563697578751457999999873-49978998157888757999999997--49985
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3999963899899999997699889976989899999999999999999
Q gi|254780892|r 76 FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 (133)
Q Consensus 76 pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~ 124 (133)
.+|++||+++++++.+|+..|+.|||.||++.++|..++.++......+
T Consensus 78 ~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~ 126 (475)
T COG4753 78 EFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQ 126 (475)
T ss_pred EEEEEECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3999846420589999986185212207698999999999999999998
No 28
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.94 E-value=3.2e-25 Score=170.70 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=108.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHH-CCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCC
Q ss_conf 97799973998999999999998-898999-99997999999971-7999489970789987--7389999614348897
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFND-FGFMVF-EATSVCEAREFCEK-ELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDV 75 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~-~g~~v~-~a~~g~eAl~~~~~-~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~ 75 (133)
|.|||||||++.++++++.+++. .||++. .|.++++|++.+.. ...||+||+|+.||+| +++++.+|+. .+++
T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~--~~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA--GCKS 78 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 98799992989999999999851899089999899999999996579998589978999999789999999985--8998
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3999963899899999997699889976989899999999999999999
Q gi|254780892|r 76 FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 (133)
Q Consensus 76 pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~ 124 (133)
|||++|+.++.+...+|++.||.|||.|||+.+.|..++.++.+.++..
T Consensus 79 ~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~~~~~l 127 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMAL 127 (239)
T ss_pred EEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1999972688999999998395030489999999999999999999985
No 29
>PRK11173 two-component response regulator; Provisional
Probab=99.93 E-value=5.9e-25 Score=169.09 Aligned_cols=115 Identities=25% Similarity=0.405 Sum_probs=105.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
+||+||||+..|+.++..|+..||+|..|.||.+|++.+.. ..||+||+|++||++ +++++++|+. ..+|||++
T Consensus 5 ~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~-~~~DlvilDi~lp~~~G~~l~~~iR~~---~~~piI~l 80 (237)
T PRK11173 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ---ANVALMFL 80 (237)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHHHHHC---CCCCEEEE
T ss_conf 89999598999999999999889999998999999999863-899899993899988730355566516---88478999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 63899899999997699889976989899999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
|+.++.++...++++||+|||.|||+.++|..+++.++.+.
T Consensus 81 ta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r~ 121 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 43257788999997697678878988799999999998664
No 30
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.93 E-value=4.8e-25 Score=169.64 Aligned_cols=111 Identities=32% Similarity=0.541 Sum_probs=103.7
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 9973998999999999998898999999979999999717999489970789987--73899996143488973999963
Q gi|254780892|r 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLM 82 (133)
Q Consensus 5 LiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~ 82 (133)
|||||++.+|..++..|+.+||+|.+|.||.+|++.+.++ .||+|++|++||+| +++++++|+. .+++|||++|+
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~-~~dlvi~D~~mP~~~G~el~~~ir~~--~~~~pvI~lT~ 77 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE-KPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTA 77 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHH--CCCCCEEEEEC
T ss_conf 9892729999999999998899999989999999998757-99999977999898726999999985--89995999978
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 899899999997699889976989899999999999
Q gi|254780892|r 83 EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 (133)
Q Consensus 83 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~ 118 (133)
+++.+...+++++||++|+.|||+.++|..++++++
T Consensus 78 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 78 HGDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 789999999997689789969899999999999869
No 31
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.93 E-value=6e-27 Score=180.98 Aligned_cols=121 Identities=20% Similarity=0.345 Sum_probs=113.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEEEEE
Q ss_conf 9997399899999999999889899999997999999971799948997078998773--89999614348897399996
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLL 81 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii~lT 81 (133)
||||||++-+.+.+++=|.+.||.|.+|+||..+|.++.++.| |+||+|++||||+| +++.+|.. ....||++||
T Consensus 1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y-~liILDvmLPG~DGW~vl~~LR~~--~~~~PVl~LT 77 (219)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDY-DLIILDVMLPGMDGWQVLKALRRS--GKETPVLFLT 77 (219)
T ss_pred CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCC-EEEEEECCCCCCCHHHHHHHHHCC--CCCCCEEEEE
T ss_conf 9676308602676530520123479887768624754368883-089963258895068999998407--8987348883
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3899899999997699889976989899999999999999999999
Q gi|254780892|r 82 MEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDEN 127 (133)
Q Consensus 82 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~ 127 (133)
|.++..+.+++++.||+|||+|||+-.||.++++..+++.++....
T Consensus 78 A~D~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~~~~~~~ 123 (219)
T TIGR01387 78 ARDSVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRSESLEST 123 (219)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 3788454353011478654137877603799999876775203767
No 32
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.93 E-value=9e-25 Score=167.98 Aligned_cols=125 Identities=24% Similarity=0.337 Sum_probs=114.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEE
Q ss_conf 977999739989999999999988989999999799999997179994899707899877--389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii 78 (133)
+.+||||||++..|..+...|+..||+|..|.|+.+|++.+.+. .||+|++|+.||++. ++++.+++. .+++|||
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~--~~~~pVI 80 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR--DPDLPVI 80 (464)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEE
T ss_conf 68789992978999999999997697489858999999998628-99989981678999669999999963--8999889
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99638998999999976998899769898999999999999999999998
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQ 128 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~ 128 (133)
++|++++.+..++|++.||.||+.|||+.+.|...++++++..+...+++
T Consensus 81 ~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~ 130 (464)
T COG2204 81 VMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENR 130 (464)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98288999999999855703332189999999999999998765322210
No 33
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.93 E-value=6.6e-25 Score=168.79 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=106.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078998773--899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii~ 79 (133)
.+|||||||+.|+.+++.+|+..|++|..|.||.+|++.+.++..+|+|++|++||+|+| +++++|+. .+.+|||.
T Consensus 682 lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~--~~~~pIIA 759 (912)
T PRK11466 682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ--YPSLVLIG 759 (912)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC--CCCCCEEE
T ss_conf 8699994878899999999998699899989999999999718998589876999999899999999861--99997899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+|++...++..+++++|.++||.||++++.|...+.+.++
T Consensus 760 lTA~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~ 799 (912)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (912)
T ss_pred ECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 7798788999999976998775498999999999999846
No 34
>PRK13557 histidine kinase; Provisional
Probab=99.93 E-value=9.7e-25 Score=167.81 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=105.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC-CC--HHHHHHHHCCCCCCCEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078998-77--389999614348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VL--EFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~-~~--~l~~~ir~~~~~~~~pii 78 (133)
.+||||||++.+|.+++.+|+.+||+|..|.||.+|++.+.++..||+|++|+.||| |. ++++++|.. .+.+||+
T Consensus 414 ~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~--~p~i~ii 491 (538)
T PRK13557 414 ETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRR--QPKIKVL 491 (538)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHH--CCCCEEE
T ss_conf 25899679899999999999976999999899999999996099988998877799998899999999853--8998399
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99638998999999976998899769898999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
++|++........++..|.++||.|||+..+|..+|++++.
T Consensus 492 ~~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 532 (538)
T PRK13557 492 LTTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLD 532 (538)
T ss_pred EEECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 99799877889977528998888198999999999999867
No 35
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.93 E-value=9.5e-25 Score=167.84 Aligned_cols=119 Identities=25% Similarity=0.339 Sum_probs=109.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
|| ||+|||++..+..++..|+..||+|..|.+|.+|++.+.++ .||+||+|++||++ .++++++|+. .+.+|||
T Consensus 1 mk-ILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~-~~DlvilDi~lp~~~G~~l~~~ir~~--~~~~pII 76 (222)
T PRK10643 1 MK-ILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESG-HYSLVVLDLGLPDEDGLHFLARIRQK--KYTLPVL 76 (222)
T ss_pred CE-EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHC--CCCCCEE
T ss_conf 97-99992889999999999997899999989999999999748-99899996888998622689999834--8998899
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
++|+.++.+....++++||+||+.|||+.++|..+++.++++.+.
T Consensus 77 ~lt~~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr~~~ 121 (222)
T PRK10643 77 ILTARDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 (222)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 982103678899999759977643887689999999999703236
No 36
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.93 E-value=1.3e-24 Score=166.97 Aligned_cols=117 Identities=13% Similarity=0.280 Sum_probs=107.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.|||+|||++..++.++..|+..||+|..|.+|.+|++.+.+ ..||+||+|++||++ +++++++|+. ..+|||+
T Consensus 11 ~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~-~~~DliilDi~lp~~~Gl~l~~~lr~~---~~~piI~ 86 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQ-TPPDLILLDLMLPGTDGLTLCREIRRF---SDIPIVM 86 (240)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCHHHHHCC---CCCCEEE
T ss_conf 879999298999999999999889999998999999999973-799899987999888776321122115---7646899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+|+.++.++...++++||+||+.|||+.++|..+++.++++..
T Consensus 87 lta~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lrr~~ 129 (240)
T PRK10710 87 VTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 (240)
T ss_pred ECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 8167888999999986998760077653899999999984523
No 37
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.93 E-value=2.1e-24 Score=165.83 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=108.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
|||+||||+..+..+...|+..||+|..|.+|.+|++.+.++ .||++++|++||++ +++++++|+. .+++|||++
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~-~~dlvilD~~lp~~~G~~l~~~ir~~--~~~~piI~l 78 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH-LPDIAIVDLGLPDEDGLSLIRRWRSN--DVSLPILVL 78 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHCC--CCCCCEEEE
T ss_conf 899995989999999999997899999989999999999757-99899997999898864001201104--898768999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
|+..+.+...+|+++||+||+.|||+.++|..+++.++++..
T Consensus 79 ta~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~~ 120 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 (223)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 444567789999986998864189777899999999966555
No 38
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.92 E-value=6.5e-24 Score=162.89 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=106.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.+||||||++.+|..++.+|+..||.|..+.+|+++++.+.+ ..||+||+|++|||+ +++++++|+. .+.+|||+
T Consensus 4 ~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~-~~pdlvllDi~mP~~~G~e~l~~l~~~--~p~~~viv 80 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKAR--GSPLPVIV 80 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCCHHHHHHHHHC--CCCCCEEE
T ss_conf 979998499999999999999889989998999999999765-797999877999998960799998722--89986799
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
+|++++.++..+|+++||++|+.||++.++|..++++++..
T Consensus 81 lT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 81 MTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 97457488889999829464455999999999999999971
No 39
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.92 E-value=1.6e-24 Score=166.45 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=111.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEEE
Q ss_conf 999739989999999999988989999999799999997179994899707899877--389999614348897399996
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYLL 81 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~lT 81 (133)
|+|||||..+|-+|.+.|+..|+.|..+.|+..++..+.+++.||+|++|+.|||+. .|+.++++. .|.+|||+||
T Consensus 1 vwvvDDD~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~--~P~LPVIvM~ 78 (471)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKR--HPKLPVIVMT 78 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC--CCCCCEEEEC
T ss_conf 95776471899999999966695453113189999998447999879861226882489999999850--8999779871
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3899899999997699889976989899999999999999999999
Q gi|254780892|r 82 MEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDEN 127 (133)
Q Consensus 82 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~ 127 (133)
++++....+.|++.||.+||.|||+.+++..-+.+++...+.....
T Consensus 79 A~~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~~~~~~~ 124 (471)
T TIGR01818 79 AHSDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL 124 (471)
T ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 3067899999973583021769876688999999861030012220
No 40
>PRK13435 response regulator; Provisional
Probab=99.92 E-value=1.4e-23 Score=160.82 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=99.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC---CHHHHHHHHCCCCCCCEE
Q ss_conf 7799973998999999999998898999-999979999999717999489970789987---738999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV---LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~---~~l~~~ir~~~~~~~~pi 77 (133)
-|||||||+..++..++..|+..||+|. +|.+|++|++.+++ ..||++++|++||+| .+++++++. .+++||
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~-~~PDlvllDi~LpdG~~G~e~~r~l~~---~~~ipv 77 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRR-AQPDVALVDIRLADGPTGVEVARRLSI---DGGVEV 77 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCCHHHHHHHHHH---CCCCCE
T ss_conf 7899989989999999999998799799975999999999765-999899978878999989999999987---599838
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9996389989999999769988997698989999999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
|++|++. +...+..+||.|||.|||+.++|..+++++.+++..
T Consensus 78 I~lTa~~---d~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr~~ 120 (141)
T PRK13435 78 IFMTANP---ERVGHDFAGALGVIAKPYSLRQVARALSYVAARRVD 120 (141)
T ss_pred EEEECCH---HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9997779---986013459985898999989999999999971568
No 41
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.91 E-value=2.4e-23 Score=159.47 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=108.3
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCC--CCCHHHHHHHHCCCCCCCEEE
Q ss_conf 799973998999999999998-898999-9999799999997179994899707899--877389999614348897399
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFND-FGFMVF-EATSVCEAREFCEKELLPNYLVIDESME--GVLEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~-~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP--~~~~l~~~ir~~~~~~~~pii 78 (133)
||+|+|||..++.+|+.++.. ..++|. .|.||.||++.+.+ ..||+|++|+-|| ||+|++.+++.......+.||
T Consensus 4 ri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~-q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi 82 (270)
T TIGR02875 4 RIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKE-QKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVI 82 (270)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 8999828889999999998528983899741476899999960-899899951504300057999998898874489588
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
+|||.+.+.-.++|++.||+-|++||||-+.|..+|+++.+.
T Consensus 83 ~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 83 MLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred EEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 852237558999999728981566504178899999986246
No 42
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=4.7e-23 Score=157.75 Aligned_cols=119 Identities=25% Similarity=0.323 Sum_probs=111.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHH-CCCCCCCEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--738999961-4348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQ-MPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~-~~~~~~~pii 78 (133)
-+||+|||.+.++..++++|+..||++.+|.||++|++....++ ||+|++|++||+| .|+|.+++. .|.+..+|++
T Consensus 15 ~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~-~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i 93 (360)
T COG3437 15 LTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP-PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVI 93 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf 14889658666899999999742641464147507788751168-85677642577765999999987249765653259
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 9963899899999997699889976989899999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
++|+.++.+...+++.+||++|+.|||++.+|..+++..++.+
T Consensus 94 ~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 94 LLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9860587699999997247777528898899999999999998
No 43
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.90 E-value=4.1e-22 Score=152.18 Aligned_cols=122 Identities=25% Similarity=0.337 Sum_probs=113.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
.++||+|||+...+..++++|+..||++..|.+|.+|+..+.+. .||+|++|+.||++ +++|+++|+....+.+|||
T Consensus 132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~-~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii 210 (435)
T COG3706 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL-PPDLVLLDANMPDMDGLELCTRLRQLERTRDIPII 210 (435)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 75089974807799999999875363366515989999997468-98589995578766789999997244444566389
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
++|+.++.+...+|++.|++||+.||+...+|..++++.+++.+.
T Consensus 211 ~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 995266347899999768851673477879999999999985418
No 44
>KOG0519 consensus
Probab=99.89 E-value=2.2e-22 Score=153.72 Aligned_cols=117 Identities=24% Similarity=0.262 Sum_probs=106.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.+||+||||..+|+..+..|...|.++.++.+|.||++.+.....+|+|++|++||.| ++.++++|+... ..+|||.
T Consensus 667 ~~iLlvddn~vn~~Va~~~l~~~g~~v~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~pIvA 745 (786)
T KOG0519 667 PKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLPIVA 745 (786)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCEEE
T ss_conf 765785587101999998999739645742886999986389986327999757755554999999987516-7887799
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+||+.+.+...+|++.|.++||.|||+.+.|..++.+++.
T Consensus 746 lTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519 746 LTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EECCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 7468757889999982876467463318999999999733
No 45
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.88 E-value=3.7e-21 Score=146.47 Aligned_cols=102 Identities=25% Similarity=0.288 Sum_probs=87.6
Q ss_pred CC-EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCC
Q ss_conf 97-7999739989999999999988-98999-9999799999997179994899707899877--389999614348897
Q gi|254780892|r 1 MD-SLLLVDSSHIVRKVGRHLFNDF-GFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDV 75 (133)
Q Consensus 1 m~-~ILiVDD~~~~r~~l~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~ 75 (133)
|| |||||||++.+|+.++++|+.. |++|. +|.||.+|++.+.+ ..||+|++|++||+|+ +++++|++. . .+
T Consensus 1 MkirVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~nG~eAl~~~~~-~~pDvVllDi~MP~mdGie~l~~I~~~--~-p~ 76 (345)
T PRK00742 1 MKIRVLVVDDSAFMRRLLSEILNSDPDIEVVGTARDGLEAVEKIKK-LNPDVITLDVEMPVMDGIEALRKIMAL--R-PT 76 (345)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH--C-CC
T ss_conf 9826999929889999999999728990899998999999999886-099999983788999879999999975--8-98
Q ss_pred EEEEEECCC--CHHHHHHHHHCCCCEEEECCCC
Q ss_conf 399996389--9899999997699889976989
Q gi|254780892|r 76 FVYYLLMEV--DFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 76 pii~lT~~~--~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
||||+|+.. +.+...+|+++||.||+.||-.
T Consensus 77 pVimvSs~~~~~~~~~~~Al~~GA~D~i~KP~~ 109 (345)
T PRK00742 77 PVVMVSSLTERGAEITLEALELGAVDFVPKPFL 109 (345)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 779997225556599999997592248957888
No 46
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.87 E-value=1.3e-21 Score=149.13 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=108.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCC-----
Q ss_conf 779997399899999999999889899999997999999971799948997078998773--8999961434889-----
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD----- 74 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~----- 74 (133)
++||+||||+.|..+.+.+|++.|++|..|.||.+|.+.+.++..||++++|+++||++| +.+++|......+
T Consensus 762 y~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~ 841 (1052)
T TIGR02956 762 YRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDE 841 (1052)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 01324644747799999998427944720854999999985488767545515788986567899999999732044456
Q ss_pred -CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf -73999963899899999997699889976989899999999999
Q gi|254780892|r 75 -VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 (133)
Q Consensus 75 -~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~ 118 (133)
+|.|..||+--.|+..+-..+|.++||.||+..+.|...|.+++
T Consensus 842 p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 842 PVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 777222113344776999975302663479987788999999987
No 47
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.87 E-value=6.9e-21 Score=144.83 Aligned_cols=120 Identities=25% Similarity=0.269 Sum_probs=106.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078998773--899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii~ 79 (133)
.-|-|||||..+|+.+..+|++.||++.+..|+++-+.... ...|-++|+|+.|||+.| +..++.. .....||||
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-~~~pGclllDvrMPg~sGlelq~~L~~--~~~~~PVIf 81 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-LDRPGCLLLDVRMPGMSGLELQDRLAE--RGIRLPVIF 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHH--CCCCCCEEE
T ss_conf 76899768488999999999838953665047999983066-788976998557888850899999995--399988799
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 963899899999997699889976989899999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~ 124 (133)
+||++|....++|++.||.|||.|||+...|..++++.++....+
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~ 126 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASR 126 (202)
T ss_pred EECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 827887289999997421567747885489999999999988888
No 48
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.87 E-value=3.6e-21 Score=146.52 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=113.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCC---CC-CHHHHHHHHC-CCCCCCEEE
Q ss_conf 999739989999999999988989999999799999997179994899707899---87-7389999614-348897399
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME---GV-LEFIAHVRQM-PLGTDVFVY 78 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP---~~-~~l~~~ir~~-~~~~~~pii 78 (133)
+||||||+-.++.|+=-|. .+|++..|.|-++|+..++++. |.+|.+|+-|| |+ .|.+..+++. .-.|+++||
T Consensus 1 LLiVeDD~glQKQLkWs~G-~~Ye~~~A~DR~sAiA~vRRhe-P~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVI 78 (451)
T TIGR02915 1 LLIVEDDLGLQKQLKWSFG-ADYEVAVAADRESAIALVRRHE-PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI 78 (451)
T ss_pred CCEEECCHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9245368665678764157-8840355347578999860569-9647736755789887458999999999638980489
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999999999987750
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLDA 132 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l~a 132 (133)
++||+++.++..+|...||+||..|||+++.|.-.|.+++..++...+||.|.+
T Consensus 79 ViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~ 132 (451)
T TIGR02915 79 VITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQS 132 (451)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986689838899996437510135787578999999998888888887699874
No 49
>PRK09483 response regulator; Provisional
Probab=99.85 E-value=6.2e-20 Score=139.15 Aligned_cols=117 Identities=26% Similarity=0.338 Sum_probs=105.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCE
Q ss_conf 977999739989999999999988-98999-999979999999717999489970789987--73899996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDF-GFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~p 76 (133)
|.||+||||++.+|..++.+|+.. |+++. +|.++.+|++.+.+ ..||++++|++|||+ .++++.++.. .+.++
T Consensus 1 Mi~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-~~pDvvllDl~lp~~~Gl~~~~~i~~~--~p~~~ 77 (216)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRT-NAVDVVLMDMNMPGIGGLEATRKILRS--TPDVK 77 (216)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCHHHHHHHHHH--CCCCC
T ss_conf 958999849999999999999748995899998999999999985-599999986889898752377888740--89985
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99996389989999999769988997698989999999999999
Q gi|254780892|r 77 VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 77 ii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
|+++|++++.....+++++||.+|+.|+.+.++|..+++.+...
T Consensus 78 vivls~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G 121 (216)
T PRK09483 78 IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (216)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 78630566328899999748878994799999999999999859
No 50
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.85 E-value=6.3e-20 Score=139.12 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=86.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEE
Q ss_conf 77999739989999999999988-98999-9999799999997179994899707899877--38999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDF-GFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pi 77 (133)
-|||||||++.+|+.++++|+.. |++|. +|.||.+|++.+.+ ..||+|++|++||+|+ ++++++++. . .+||
T Consensus 2 irVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~~g~eAl~~~~~-~~pDvVllDi~MP~mdGie~l~~I~~~--~-p~PV 77 (340)
T PRK12555 2 MNVGIVDDSALAREALRRIIARRPDHRVLGVATDGLQARDLCKA-QPPDVVLLDLEMPRMDGLTFLRRIMRR--R-PCPV 77 (340)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHH--C-CCCE
T ss_conf 88999909889999999999609994899998999999999886-199999972788999879999999987--8-9986
Q ss_pred EEEECCC--CHHHHHHHHHCCCCEEEECCC
Q ss_conf 9996389--989999999769988997698
Q gi|254780892|r 78 YYLLMEV--DFEKMIAGARAGANSFLLKPF 105 (133)
Q Consensus 78 i~lT~~~--~~~~~~~a~~~Ga~~yl~KP~ 105 (133)
||+|+.. +.+...+|+++||.||+.||-
T Consensus 78 imvSs~~~~~~~~~~~AL~~GA~D~i~KP~ 107 (340)
T PRK12555 78 LIVSSLTEAGASITYEALGAGALDAVDKPK 107 (340)
T ss_pred EEEEECCCCCHHHHHHHHHCCHHHEEECCC
T ss_conf 998503565769999999779776684788
No 51
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.84 E-value=2.1e-19 Score=136.00 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=104.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 799973998999999999998898999-999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
+||||||++.+|..++.+|+..+++|. ++.||.+|++.+.+ ..||++++|+.|||+ .++++.+|+. .+.++|++
T Consensus 2 ~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~-~~pDvvllDl~lp~~~G~~~~~~ir~~--~~~~~viv 78 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGIIII 78 (204)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHH--CCCEEEEE
T ss_conf 899986989999999999986899899997999999999874-397999995899999841678889872--79805999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9638998999999976998899769898999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+|++++.....+|+++||.+|+.|+.+.++|..+++.+..
T Consensus 79 ~s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~ 118 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred EECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 9724652114433526863799789999999999999977
No 52
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.84 E-value=1.3e-19 Score=137.24 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=102.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEE
Q ss_conf 77999739989999999999988-98999-999979999999717999489970789987--738999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDF-GFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pi 77 (133)
.|||||||++.+|..++.+|+.. ++++. +|.++.+|++.+.+. .||+|++|++|||+ .++++.+|.. .+.+||
T Consensus 7 irVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~~~-~pDlvllDl~lp~~~G~~~~~~l~~~--~~~~~i 83 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL-DPDLILLDLNMPGMNGLETLDKLREK--SLSGRI 83 (216)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCC--CCCCCE
T ss_conf 789998399999999999997589938999989999999998707-99999995999998887642323345--788746
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999638998999999976998899769898999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+++|+.++.+...+++++||++|+.||.+.++|..+++.+..
T Consensus 84 ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~ 125 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 125 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 763055418899999966987898378999999999999985
No 53
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.84 E-value=1.8e-19 Score=136.41 Aligned_cols=115 Identities=27% Similarity=0.354 Sum_probs=103.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEE-EEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEE
Q ss_conf 7799973998999999999998-89899-9999979999999717999489970789987--738999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFND-FGFMV-FEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~-~g~~v-~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pi 77 (133)
.||+||||++.+|..++.+|+. .++++ .+|.++.++++.+.+ ..||+||+|++|||+ .++++.+|.. .+.++|
T Consensus 7 irIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~-~~pDlvllD~~lp~~~G~~~~~~l~~~--~p~~~i 83 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-LDIDVILLDLNMKGMSGLDTLNALRRD--GVTAQI 83 (215)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHC--CCCCCE
T ss_conf 57999839899999999999758992899998999999999864-499899980899899874123356541--887736
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999638998999999976998899769898999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+++|++++.+...+++++||++|+.||.+.++|..+++.+..
T Consensus 84 ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~ 125 (215)
T PRK10403 84 IILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 886324323678998746876688489999999999999984
No 54
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=2.1e-19 Score=136.05 Aligned_cols=124 Identities=24% Similarity=0.401 Sum_probs=109.3
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 799973998999999999998-898999-999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFND-FGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~-~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
++|||||++.+.++-++++.. .||++. .|.|+++|..++.. ..||||++|+.|||+ ++++..+|+. ...+-||
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~pDLILLDiYmPd~~Gi~lL~~ir~~--~~~~DVI 78 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-FKPDLILLDIYMPDGNGIELLPELRSQ--HYPVDVI 78 (224)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HCCCEEEEEECCCCCCCHHHHHHHHHC--CCCCCEE
T ss_conf 2899708658999999999738995389860649999999984-089979996026798507799999846--8997889
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999999999987
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~ 129 (133)
++|+-++.+....|++.|+.|||.|||..+-|..++.++.++++....++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~~~~ 129 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALESHQQ 129 (224)
T ss_pred EEECCCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 995344378999999658232205634099999999999999999862010
No 55
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.81 E-value=1.5e-18 Score=131.00 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=100.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEE
Q ss_conf 7799973998999999999998898999999979999999717-99948997078998773--89999614348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~-~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii 78 (133)
.+||+|||++.+|...+.+|+.+||+|..+.||.+|++.+.++ ..+|+|++| +||+|.+ +...++. ..+++|||
T Consensus 700 e~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~--~~p~lpVi 776 (831)
T PRK13837 700 ETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHA--AAPTLPII 776 (831)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHH--HCCCCEEE
T ss_conf 77999859889999999999967996888689999999998389985399988-9999987999999986--18997499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 99638998999999976998899769898999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+|+++......++...|...||.|||+.++|..+++..+...+
T Consensus 777 -lsg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~~r 819 (831)
T PRK13837 777 -LAGSSLKMAAREALATAIAEILPKPISSRTLAYALRTALATAR 819 (831)
T ss_pred -EECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf -9768814433110222667065099999999999999984888
No 56
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.81 E-value=2.3e-18 Score=129.83 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=103.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEE
Q ss_conf 7799973998999999999998-898999-999979999999717999489970789987--738999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFND-FGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~-~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pi 77 (133)
.||+||||++.+|..++.+|+. .++++. +|.++.++++.+.+. .||+|++|++|||+ .++++.+++. .+.++|
T Consensus 4 ~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~-~~DvvllD~~lp~~~g~~~i~~i~~~--~p~~~i 80 (210)
T PRK09935 4 ASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTY-PVDLVILDIELPGTDGFTLLKRIKQI--QETVKV 80 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHH--CCCCCE
T ss_conf 889998596999999999996298928999989999999999747-99999988999998864056789873--899708
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9996389989999999769988997698989999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
+++|++.+.....+++++||.+|+.|+.+.++|..+++.+...
T Consensus 81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G 123 (210)
T PRK09935 81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSG 123 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9971767299999999668776886789999999999999859
No 57
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.81 E-value=2e-18 Score=130.24 Aligned_cols=114 Identities=22% Similarity=0.146 Sum_probs=100.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHH-HCCCE-EEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCE
Q ss_conf 9779997399899999999999-88989-999999799999997179994899707899877--3899996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFN-DFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~-~~g~~-v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~p 76 (133)
|.||+||||++.+|..++.+|+ ..+++ |.++.|++++++.+.+ ..||++++|+.|||+. +++++++ +..+
T Consensus 1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~-~~~dvvllD~~mp~~~g~~~~~~l~-----~~~~ 74 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-RGVQVCICDISMPDISGLELLSQLP-----KGMA 74 (196)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCHHHHHHHH-----CCCC
T ss_conf 919999879799999999998129995999998999999998874-4999999878878862077999984-----3874
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99996389989999999769988997698989999999999999
Q gi|254780892|r 77 VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 77 ii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
|+++|++++.+...+++++||.+|+.|+.+.++|..+++.+...
T Consensus 75 vivls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G 118 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 89997307599999999759988997789999999999999869
No 58
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.80 E-value=6.4e-18 Score=127.17 Aligned_cols=115 Identities=33% Similarity=0.416 Sum_probs=102.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 79997399899999999999889-8999-999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
+|++|||.+.+|..++.+|+..+ ++|. +|.+|.++++.+.. ..||+|++|+.||++ .++++.++ ...++++|+
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-~~pdvvl~Dl~mP~~~G~e~~~~l~--~~~p~~~vv 78 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-LKPDVVLLDLSMPGMDGLEALKQLR--ARGPDIKVV 78 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHH--HHCCCCEEE
T ss_conf 4999809777999999999868996699982788999998513-7998899837889987599999999--868997299
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
++|++++.....++++.||++|+.|+.+++++..+++.+...
T Consensus 79 vlt~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 996778989999999779969986799999999999999758
No 59
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.79 E-value=5.1e-18 Score=127.76 Aligned_cols=115 Identities=19% Similarity=0.135 Sum_probs=102.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCC-----CCHHHHHHHHCCCCCCC
Q ss_conf 79997399899999999999889-8999-99997999999971799948997078998-----77389999614348897
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVF-EATSVCEAREFCEKELLPNYLVIDESMEG-----VLEFIAHVRQMPLGTDV 75 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~-----~~~l~~~ir~~~~~~~~ 75 (133)
||+||||.+.+|..++.+|+..+ ++|. +|.+|.++++.+.+ ..||++++|+.||| |.++++.+|+. ++.+
T Consensus 5 rIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~-~~pDvvllDl~mpg~~~~dGl~~~~~i~~~--~p~~ 81 (216)
T PRK10840 5 NVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRH--FPSL 81 (216)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 8999889799999999998159996899987999999999862-398989982677999887899999999985--8998
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 399996389989999999769988997698989999999999999
Q gi|254780892|r 76 FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 76 pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
+|+++|++.+.....+++++||.+|+.|--++++|..+++.+...
T Consensus 82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G 126 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 089984778789999998589748998789999999999999879
No 60
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.78 E-value=2.1e-17 Score=124.03 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=97.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CE-EEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCE
Q ss_conf 9779997399899999999999889-89-9999997999999971799948997078998773--899996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFG-FM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g-~~-v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~p 76 (133)
|-+|+||||++..|..++.+++..+ .+ +.++.+|.+|++.+.+ ..||++++|++|||+.| +++.++. ...++
T Consensus 1 M~ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~eal~~~~~-~~~DllfLDI~m~~~~G~ela~~l~~---~~~~~ 76 (239)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEALGAIHR-LKPDVVFLDIQMPRISGLELVGMLDP---EHMPY 76 (239)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHCC---CCCCE
T ss_conf 949999969999999999999758798999998999999999985-39999998399869599999998373---34986
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99996389989999999769988997698989999999999999999
Q gi|254780892|r 77 VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 77 ii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
||++|++ .++..+|++.+|.|||.||++.+.|..++.++.+....
T Consensus 77 iIFvT~~--~e~a~~af~~~a~dYllKP~~~e~l~~~l~r~~~~~~~ 121 (239)
T PRK11697 77 IVFVTAF--DEYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQDRSP 121 (239)
T ss_pred EEEEECC--HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999586--89999997309726653899999999999999997542
No 61
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.76 E-value=5.2e-17 Score=121.74 Aligned_cols=117 Identities=29% Similarity=0.415 Sum_probs=100.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 7799973998999999999998898999999979-999999717999489970789987--7389999614348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC-EAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~-eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
.+||+|||++..|..++..|+.+|+.+.++.+|. +|++.+.++..||+|++|+.||++ .++++.+|+. .+.+|++
T Consensus 6 ~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~~~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~--~~~~pvv 83 (130)
T COG0784 6 LRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR--GPNIPVI 83 (130)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEE
T ss_conf 88999789999999999999877978999578399999998627899999980688788889999999971--8999689
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHHH
Q ss_conf 9963899899999997699889976989899-99999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRET-LRFAMRELPQM 120 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~-L~~~i~~~~~~ 120 (133)
++|++........++..|+++|+.||+.... |..++.+....
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 84 LLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9986786765999997687689758998799999999999864
No 62
>PRK09191 two-component response regulator; Provisional
Probab=99.73 E-value=8.9e-17 Score=120.35 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=89.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC-CH--HHHHHHHCCCCCCCEE
Q ss_conf 7799973998999999999998898999-999979999999717999489970789987-73--8999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV-LE--FIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~--l~~~ir~~~~~~~~pi 77 (133)
.|||||||++.+...++..|++.||+|. .|.++++|++.+.+ ..||+|++|++|+|+ .| ....|++ ..++||
T Consensus 138 ~rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~-~~PDlvL~DI~L~d~~sGIdaa~~I~~---~~~iPv 213 (261)
T PRK09191 138 TSVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKK-TRPGLILADIQLADGSSGIDAVNDILK---TFDVPV 213 (261)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHHH---HCCCCE
T ss_conf 8879985859999999999998799678762789999999742-598989995347999879999999998---289998
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9996389989999999769988997698989999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
||+|++.+.-. ..-..-..-++.|||+++.+..++.+.+--
T Consensus 214 IFiTAyperll--tg~~~ep~~li~KPf~~~~v~aai~qAlff 254 (261)
T PRK09191 214 IFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEECCCHHHHC--CCCCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99777846530--278888740356989889999999999972
No 63
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.70 E-value=9.1e-17 Score=120.29 Aligned_cols=115 Identities=19% Similarity=0.310 Sum_probs=100.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
+++||||+......+..+|...|..+..+++..+|++.+++ ..||+|++|+.||+| .+|++++|.+ .+.+|||++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-~kpDLifldI~mp~~ngiefaeQvr~i--~~~v~iifI 78 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-FKPDLIFLDIVMPYMNGIEFAEQVRDI--ESAVPIIFI 78 (361)
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHH--HCCCCEEEE
T ss_conf 27998463899999999998611021006887889999984-388779998523786087899999875--314868999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
|++.... ..+....+.||+.|||+++-|..++.+....-.
T Consensus 79 ssh~eya--~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve 118 (361)
T COG3947 79 SSHAEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVE 118 (361)
T ss_pred ECCHHHH--HHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 6305652--320355667541688888899999998740244
No 64
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.66 E-value=2.1e-15 Score=112.14 Aligned_cols=113 Identities=25% Similarity=0.291 Sum_probs=102.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEE
Q ss_conf 77999739989999999999988989999999799999997179994899707899877--3899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~ 79 (133)
+.+|+||||..+...+.+.++.-||.|..|.+.+||+..+++ ..|.-.++|+.|.++. .++..+|+. .++..+|+
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-~~PayAvvDlkL~~gsGL~~i~~lr~~--~~d~rivv 86 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRER--RADMRIVV 86 (182)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCCCEEEEEEEECCCCCHHHHHHHHHC--CCCCEEEE
T ss_conf 605896187699999999986068625761449999999851-798528898640688746899999824--97643898
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
+|||++-...++|.+.||++||.||-+.+.+..++.+-
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 84511799999999862455407977768999998602
No 65
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.65 E-value=8.9e-15 Score=108.43 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=87.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHH--HHHHHHCCCCCCCE
Q ss_conf 9779997399899999999999889--8999999979999999717999489970789987738--99996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g--~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l--~~~ir~~~~~~~~p 76 (133)
|-|||||||++..|+.++++|+..| .-|-.|.||.+|++++.+ ..||+|.+|+.||.|.++ ++++ .. .+.+|
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-~~PDVi~ld~emp~mdgl~~l~~i--m~-~~p~p 76 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMDGLEALRKI--MR-LRPLP 76 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHH--HC-CCCCC
T ss_conf 947999858199999999998308973799733787999999972-299789972566445479999998--44-79986
Q ss_pred EEEEECCCC--HHHHHHHHHCCCCEEEECCCC
Q ss_conf 999963899--899999997699889976989
Q gi|254780892|r 77 VYYLLMEVD--FEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 77 ii~lT~~~~--~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
|||+|+-.. .+...++++.||.||+.||..
T Consensus 77 Vimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 77 VIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 89995145213799999984574213217876
No 66
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.62 E-value=2e-14 Score=106.40 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=101.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEE
Q ss_conf 97799973998999999999998898999-99997999999971799948997078998773899996143488973999
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~ 79 (133)
+.++|++||++.++..++..|...||++. ++.++.++.+.+.. ..||+|++|+.+|... ....+.........|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-~~pDvVildie~p~rd-~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-LQPDVVILDIEMPRRD-IIEALLLASENVARPIVA 82 (194)
T ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH-CCCCEEEEECCCCCCC-HHHHHHHHHCCCCCCEEE
T ss_conf 65303424113555678989987597387654134475067785-2998799966787732-899989860589987899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
+|++++++...++.++|+.+|++||+++..|...+.-.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA 120 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVA 120 (194)
T ss_pred EECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 97167858999999738749883476542104799999
No 67
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.58 E-value=4.7e-14 Score=104.14 Aligned_cols=112 Identities=7% Similarity=0.040 Sum_probs=96.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHH--HHH-HHHCCCCCCCEE
Q ss_conf 77999739989999999999988989-99999979999999717999489970789987738--999-961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAH-VRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l--~~~-ir~~~~~~~~pi 77 (133)
.|+|+++|....+..+...++.. +. +.++.++.++++.+. .||+|++|+.||++.++ +++ ++. ..+.++|
T Consensus 11 ~~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~~---~pdViLmDi~mp~~~gi~~~~e~i~~--~~p~~kV 84 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSR--KNNNIKI 84 (216)
T ss_pred EEEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCEE
T ss_conf 38999558429999999988987-647630247766776447---99989984887883089999999972--5999779
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999638998999999976998899769898999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+++|.+++.++...++.+||.+|+.|-.++++|..+|+.+.+
T Consensus 85 liLTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~ 126 (216)
T PRK10100 85 LLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 999688748999999765876676689999999999999987
No 68
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.44 E-value=7.6e-13 Score=96.92 Aligned_cols=110 Identities=19% Similarity=0.163 Sum_probs=91.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
.||.|+|+|-..-.-+.+=..-.|.|..+.+..+|++.+.... +|||++|+.||++ ++|+.++|. ..+.+|+|++
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~-~DCvv~dy~~~~~dGieLLe~vRe--~~p~lP~Il~ 95 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPD-IDCVVAVHEPDGFDGVAFLEAVRQ--THAEFPVVVV 95 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCC-CCEEEECCCCCCCCHHHHHHHHHH--CCCCCCEEEE
T ss_conf 9999468887775234566677421276323888986531589-876996565788867999999861--3899988999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 6389989999999769988997698989999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
|+.++.+...+|+.+|+.+|+.| +.+.....+...
T Consensus 96 t~~gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~ 130 (674)
T PRK13558 96 PTAVDEDVARRAVDADATGLVPA--VSEDATAAIADR 130 (674)
T ss_pred ECCCCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHH
T ss_conf 56785899999875163643344--717689999999
No 69
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.30 E-value=4.1e-11 Score=86.59 Aligned_cols=104 Identities=11% Similarity=-0.046 Sum_probs=84.9
Q ss_pred HHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 999999999889-----899-99999799999997179994899707899877--3899996143488973999963899
Q gi|254780892|r 14 RKVGRHLFNDFG-----FMV-FEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 14 r~~l~~~L~~~g-----~~v-~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
...++.+|+... .+| .++++|.||+..+.. ..||++++|+.||+++ +++++++.. +|+++||++|.+++
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~-~~v~~~LmDi~mP~~dGL~~~~~L~r~--~P~vriLVLTm~d~ 79 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISF-SAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADDDI 79 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCC-CCCEEEEECCCCCCCCHHHHHHHHHHH--CCCCEEEEEECCCC
T ss_conf 788999984189983489995054569999862886-664389853899997669999999997--89971899974768
Q ss_pred HHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 899999997-69988997698989999999999999
Q gi|254780892|r 86 FEKMIAGAR-AGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 86 ~~~~~~a~~-~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
+.+..+++. .|+.+|+.|....++|..++..+...
T Consensus 80 e~~v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g 115 (205)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (205)
T ss_pred HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 799999999841668885678899999999998706
No 70
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=9.4e-11 Score=84.45 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=94.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCE
Q ss_conf 9779997399899999999999889-8999-9999799999997179994899707899877--3899996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFG-FMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~p 76 (133)
|-+++++||++..|..+..++.... .++. ++.++.++++.+... .||++++|+.||++. |+.+.++.. .+..+
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fldI~~~~~~G~ela~~i~~~--~~~~~ 77 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL-RPDLVFLDIAMPDINGIELAARIRKG--DPRPA 77 (244)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHCCC--CCCCE
T ss_conf 9851771476767999999988744211113312303178887602-57769997237652449999986156--98853
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99996389989999999769988997698989999999999999
Q gi|254780892|r 77 VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 77 ii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
|+++|++++ ....+.+..|.||+.||++.+.+..++.+..+.
T Consensus 78 Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 78 IVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEEEHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999986154--323331334667742854268999999998887
No 71
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.22 E-value=1.5e-09 Score=77.31 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=102.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.+|++|||+......+...|... +.+....++.+++..... ..||++++|..||+. ..++..+|.......+|++.
T Consensus 156 ~~il~v~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~ 233 (457)
T PRK09581 156 GRILLVDDDVSQAERIANILKEE-FRVDVLSDPEEALIRAAE-GNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILL 233 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHHH-CCEEEECCHHHHHHHHCC-CCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 61999879679999999997533-246885486999987435-7976899756567664689999997143435732999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 96389989999999769988997698989999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
++..++.....++++.|+++|+.||++..++..++...+++++.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~d~~~~~~~~~e~~~r~~~~~~~~~~ 277 (457)
T PRK09581 234 LVDEDEDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRKRY 277 (457)
T ss_pred EECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 95688616676664146522884378627555879999998899
No 72
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=99.04 E-value=1.3e-09 Score=77.70 Aligned_cols=55 Identities=31% Similarity=0.429 Sum_probs=51.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 77999739989999999999988989999999799999997179994899707899
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP 57 (133)
.|||||||++..|..++..|++.||++.++.+|.+|++.+.++ .||+|++|+.||
T Consensus 1 ~kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~-~~dlil~D~~mP 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE-KPDLILLDIMMP 55 (55)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 9899993799999999999997899999988999999999749-999999967687
No 73
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.98 E-value=1.9e-08 Score=70.71 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=84.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078998773--899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii~ 79 (133)
++++++|+++..+..+...|+.||++|..+.+..+. .. ..+|++++|+.||++.+ ..............++++
T Consensus 537 ~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~~-~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il 611 (920)
T PRK11107 537 KRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQL----PE-AHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLIL 611 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHH----HC-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 769997697789999999999749645751788775----13-6888799616666654066789998630035784699
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 963899899999997699889976989899999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~ 115 (133)
++..............|+..++.||+++..|...+.
T Consensus 612 ~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~ 647 (920)
T PRK11107 612 ALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALL 647 (920)
T ss_pred EECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHH
T ss_conf 715643455788764253021127776889999872
No 74
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.87 E-value=3.8e-09 Score=74.88 Aligned_cols=97 Identities=27% Similarity=0.316 Sum_probs=83.5
Q ss_pred CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 8999999979999999717999489970789987--73899996143488973999963899899999997699889976
Q gi|254780892|r 26 FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 26 ~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~K 103 (133)
++|.+|.+|.+|+..+.. ..||.+++|++|||+ .++|+.+++.+.+ ++++|..++.....+.+++|+++|+.|
T Consensus 13 ~~v~~a~~g~~~l~~~~~-~~~~~~lld~~m~~~~~~~~~~~lk~~~~~----~v~~t~~~~~~~~~~~~~~~~~~~l~~ 87 (435)
T COG3706 13 KEVATAKKGLIALAILLD-HKPDYKLLDVMMPGMDGFELCRRLKAEPAT----VVMVTALDDSAPRVRGLKAGADDFLTK 87 (435)
T ss_pred HHHHHCCCHHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHHHHCCCCC----EEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 546342542779999744-898748741006886730199876358751----699860378777556776313441367
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989899999999999999999999
Q gi|254780892|r 104 PFNRETLRFAMRELPQMQKSKDEN 127 (133)
Q Consensus 104 P~~~~~L~~~i~~~~~~~~~~~~~ 127 (133)
|++...+..+...........++.
T Consensus 88 ~~~~~~~~~r~~~l~~~k~~~de~ 111 (435)
T COG3706 88 PVNDSQLFLRAKSLVRLKCSIDEL 111 (435)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 777177887526631444457898
No 75
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.53 E-value=1.8e-06 Score=58.94 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=81.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 79997399899999999999889899999997999999971799948997078998773899996143488973999963
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLM 82 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~ 82 (133)
||||||||+.-|+.++.+|+-.|.++..+.++.-.. .........++++.-.+++..++++.+.. ..+.+||++++.
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~-~~~~~~~~a~~v~~~~~~~~~~~l~~l~~--~~p~~Pvlllg~ 77 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSA-ALLSSRWEALAVILGSVSGLADLLKALAK--WDPHLPVLLLGE 77 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHH--HCCCCCEEEECC
T ss_conf 989986888999979999986499649954889889-88637885299996785209999999996--488999999878
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 89989999999769988997698989999999999
Q gi|254780892|r 83 EVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 83 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
.++... ...+.+-|.+|++-..|..++.+.
T Consensus 78 ~~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~c 107 (109)
T pfam06490 78 HDSAAE-----LANVIGELEEPLNYPQLTDLLHRC 107 (109)
T ss_pred CCCHHH-----CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 875212-----055258707889879999999875
No 76
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=96.86 E-value=0.0078 Score=37.26 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99999999889899999997999999971799948997078998773899996143488973999963899899999997
Q gi|254780892|r 15 KVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94 (133)
Q Consensus 15 ~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~ 94 (133)
..+...|+..|++|..+.+-.+++..+++.....+|++||.-. ..+++..+|.. ..++||.+++.....+..-...-
T Consensus 7 ~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~avil~~~~~-~~~ll~~ir~~--n~~lPvFl~~~~~~~~~vp~~~l 83 (111)
T pfam03709 7 RELAEALEATGREVVDATSTDDLLSLIETFTDIAAVVLSWDDE-ARGLLDEIRRR--NFDLPVFLLAETRTSEDVPLDVL 83 (111)
T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECHH-HHHHHHHHHHH--CCCCCEEEEECHHHHHCCCHHHH
T ss_conf 9999999978988997487899999998387876899984606-89999999974--78999898844125750999999
Q ss_pred CCCCEEEECC-CCHHHHHHHHHHHH
Q ss_conf 6998899769-89899999999999
Q gi|254780892|r 95 AGANSFLLKP-FNRETLRFAMRELP 118 (133)
Q Consensus 95 ~Ga~~yl~KP-~~~~~L~~~i~~~~ 118 (133)
..+++|+..- -+++....++.+..
T Consensus 84 ~~i~gfi~l~edt~~fia~~I~~aa 108 (111)
T pfam03709 84 REIDGFIELFEDTPEFIARQIEAAA 108 (111)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9887867365689899999999998
No 77
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=96.45 E-value=0.036 Score=33.33 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHCCCEEEE--ECCH-HHHHHHHHHCCCCCEEEECCCCCC----CCHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 89999999999988989999--9997-999999971799948997078998----7738999961434889739999638
Q gi|254780892|r 11 HIVRKVGRHLFNDFGFMVFE--ATSV-CEAREFCEKELLPNYLVIDESMEG----VLEFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 11 ~~~r~~l~~~L~~~g~~v~~--a~~g-~eAl~~~~~~~~pdlii~D~~mP~----~~~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
..-..++..+|+..||+|.. +..+ ++-++.+.+ ..||+|-+...|+. +-++++.+|+....+++||++=-+-
T Consensus 96 ~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~-~~~divglS~~~~~~~~~~~~~i~~lr~~~~~~~v~i~vGG~a 174 (201)
T cd02070 96 DIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 899999999998789779977899997999999997-2989999962566889999999999997289889859998801
Q ss_pred CCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9989999999769988997698
Q gi|254780892|r 84 VDFEKMIAGARAGANSFLLKPF 105 (133)
Q Consensus 84 ~~~~~~~~a~~~Ga~~yl~KP~ 105 (133)
-+.+ -+-..||+.|-.-+.
T Consensus 175 ~~~~---~a~~~GAD~~a~da~ 193 (201)
T cd02070 175 VNQE---FADEIGADGYAEDAA 193 (201)
T ss_pred CCHH---HHHHHCCCEECCCHH
T ss_conf 7999---999929887847999
No 78
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.36 E-value=0.045 Score=32.74 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCCEEEECCCCCCC----CHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 9999999999889899999---9979999999717999489970789987----73899996143488973999963899
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVFEA---TSVCEAREFCEKELLPNYLVIDESMEGV----LEFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~~a---~~g~eAl~~~~~~~~pdlii~D~~mP~~----~~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
-.+++..+|+..||+|.-. .+.++-++.+.+ ..||+|.+...|+.. -++...+|+. ..+++||+ +-+..-
T Consensus 15 G~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~-~~~d~I~lS~~~~~~~~~~~~~i~~l~~~-g~~~i~v~-vGG~~~ 91 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-EDADAIGLSGLLTTHMTLMKEVIEELKEA-GLDDIPVL-VGGAIV 91 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCCEEE-EECCCC
T ss_conf 9999999999789989989999999999999997-09999999622024268999999999976-99998599-989989
Q ss_pred HHHHHHHHHCCCCEEEECCC
Q ss_conf 89999999769988997698
Q gi|254780892|r 86 FEKMIAGARAGANSFLLKPF 105 (133)
Q Consensus 86 ~~~~~~a~~~Ga~~yl~KP~ 105 (133)
......+.+.||+.|..-..
T Consensus 92 ~~~~~~~~~~Gad~~~~~a~ 111 (119)
T cd02067 92 TRDFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred CHHHHHHHHCCCCEEECCHH
T ss_conf 74399999869979977807
No 79
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=95.25 E-value=0.058 Score=32.07 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=52.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078--99877389999614348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES--MEGVLEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~--mP~~~~l~~~ir~~~~~~~~pii 78 (133)
++||+||.+..+-+-|..++++.|..|.+.-++-. -+.+. ..+||||++.=- -|.-+++...+.+ ....++||-
T Consensus 525 ~~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~~a-e~~fd-~~rPDLVVLSPGPGrP~dFdv~~Ti~a-a~ar~lP~F 600 (726)
T TIGR01815 525 KRILLVDHEDSFVHTLANYLRQTGASVTTLRHSFA-EELFD-EERPDLVVLSPGPGRPKDFDVKETIKA-ALARDLPVF 600 (726)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHH-HHHHH-CCCCCEEEECCCCCCCCCCCHHHHHHH-HHHCCCCEE
T ss_conf 77999854754377778887634875530430478-99973-279988986873123875447889999-997289857
No 80
>PRK13566 anthranilate synthase; Provisional
Probab=95.24 E-value=0.097 Score=30.76 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=52.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEC--CCCCCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970--7899877389999614348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVID--ESMEGVLEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D--~~mP~~~~l~~~ir~~~~~~~~pii 78 (133)
+|||+||....+-..|.++|+..|.+|...-++ .+.+.+.+ ..||+|++. ---|.-.+....+.. ....++|+.
T Consensus 524 ~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d-~~~~~l~~-~~pD~vvlSPGPG~P~d~g~~~~i~~-~~~~~iPil 599 (724)
T PRK13566 524 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYP-VAEEILDR-VNPDLVVLSPGPGRPEDFDCKATIDA-ALARNLPIF 599 (724)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCEEEEEECC-CCHHHHHH-HCCCEEEECCCCCCCHHCCCHHHHHH-HHHCCCCEE
T ss_conf 579998465327999999999819879998189-87677763-18898998799979000558599999-985799879
No 81
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.22 E-value=0.47 Score=26.68 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH----HHHHCCCCCCCEEEEE
Q ss_conf 39989999999999988989999---9997999999971799948997078998773899----9961434889739999
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFGFMVFE---ATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA----HVRQMPLGTDVFVYYL 80 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g~~v~~---a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~----~ir~~~~~~~~pii~l 80 (133)
|-...-.+++...|+..||+|.. ..+.++-.+.+.++. +|+|.+...--....+++ .+++ ....++|+++=
T Consensus 14 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~-ad~igiSsl~G~~~~~~~~l~~~l~~-~g~~di~vvvG 91 (137)
T PRK02261 14 DCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD-ADAILVSSLYGHGEIDCRGLREKCIE-AGLGDILLYVG 91 (137)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEC
T ss_conf 61178899999999978974984688799999999998739-99999711112661279999999996-79999969983
Q ss_pred -----ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf -----638998999999976998899769898999999999999
Q gi|254780892|r 81 -----LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 81 -----T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+.++..+......+.|++......-+.++....+++.++
T Consensus 92 G~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~ 135 (137)
T PRK02261 92 GNLVVGKHDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLN 135 (137)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 62167887839999999977979887978899999999999863
No 82
>PRK05637 anthranilate synthase component II; Provisional
Probab=93.88 E-value=0.13 Score=29.95 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=39.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 97799973998999999999998898999999979999999717999489970
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D 53 (133)
|++||++|.-..+-..+.+++...|+++....+. ..++.+.. ..||.|++.
T Consensus 1 M~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~-~~~~~~~~-~~pd~ivlS 51 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVETILA-ANPDLICLS 51 (208)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC-CCHHHHHH-CCCCEEEEC
T ss_conf 9779999488975999999998679907999699-99999985-199959999
No 83
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=93.87 E-value=0.3 Score=27.86 Aligned_cols=106 Identities=9% Similarity=0.098 Sum_probs=69.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC---C-CHHHHHHHHCCCCCCCEE
Q ss_conf 779997399899999999999889899999997999999971799948997078998---7-738999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---V-LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~---~-~~l~~~ir~~~~~~~~pi 77 (133)
|+++.||-|..-......+|...|.+|.- ... +..+-...+ |.+++.+--+- + ..-.+-.|....+.+ -|
T Consensus 12 k~LayiEpNstAA~~t~~iL~~tpleVty-r~t---~~~lp~~hY-D~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~-vi 85 (140)
T COG4999 12 KRLAYIEPNSTAAQCTLDILSETPLEVTY-RPT---FSALPPAHY-DMMLLGVAVTFRENLTMQHERLAKALSMTDF-VI 85 (140)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEE-CCC---CCCCCHHHH-CEEEECCCCCCCCCCHHHHHHHHHHHHHHCC-EE
T ss_conf 64577668608999999998468826884-233---100274452-0346536665568803889999999865313-67
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 9996389989999999769988997698989999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i 114 (133)
+.+-+ ...-...+-++.|+.+.|.||+++..|...+
T Consensus 86 lalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 86 LALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred EECCC-HHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH
T ss_conf 73672-8887599996314286740765065667899
No 84
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.09 E-value=0.52 Score=26.37 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCCHH-HHHHHHCCCCCCCEE
Q ss_conf 9779997399899999999999889899999997999999971799948997078--9987738-999961434889739
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES--MEGVLEF-IAHVRQMPLGTDVFV 77 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~--mP~~~~l-~~~ir~~~~~~~~pi 77 (133)
|++||++|.-..+-..+.+++...|.++....+....+..+.. ..||.|++.-- -|.-.+. ...+++- ...+||
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-~~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~Pi 77 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-LKPDAIVISPGPGTPKDAGISLELIRRF--AGRIPI 77 (191)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH-CCCCEEEECCCCCCHHHCCHHHHHHHHH--CCCCCE
T ss_conf 9569999774424999999999739934999889658778860-4999899848997937736189999986--089988
Q ss_pred EEE
Q ss_conf 999
Q gi|254780892|r 78 YYL 80 (133)
Q Consensus 78 i~l 80 (133)
+-+
T Consensus 78 LGV 80 (191)
T COG0512 78 LGV 80 (191)
T ss_pred EEE
T ss_conf 998
No 85
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.06 E-value=0.75 Score=25.47 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCCEEEECCCCCCCC----HHHHHHHHCCCCCCCEEEEE
Q ss_conf 39989999999999988989999---999799999997179994899707899877----38999961434889739999
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFGFMVFE---ATSVCEAREFCEKELLPNYLVIDESMEGVL----EFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g~~v~~---a~~g~eAl~~~~~~~~pdlii~D~~mP~~~----~l~~~ir~~~~~~~~pii~l 80 (133)
|-...-.+++...|+..||+|.. ..+.++..+.+.++. +|+|.+.-...... ++...++.. ...++|+++-
T Consensus 10 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~-ad~i~vSsl~g~~~~~~~~l~~~L~e~-G~~di~vvvG 87 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD-ADAILVSSLYGHGEIDCKGLREKCDEA-GLKDILLYVG 87 (128)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHHHHC-CCCCCEEEEC
T ss_conf 65378899999999978972984798899999999998739-999998232025624899999999967-9999989978
Q ss_pred E----CCCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 6----3899-899999997699889976989899999999
Q gi|254780892|r 81 L----MEVD-FEKMIAGARAGANSFLLKPFNRETLRFAMR 115 (133)
Q Consensus 81 T----~~~~-~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~ 115 (133)
- +..+ .+......++|++......-+.++....++
T Consensus 88 G~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~ 127 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 9867783104899999996696857499879999999985
No 86
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.49 E-value=1.2 Score=24.30 Aligned_cols=109 Identities=15% Similarity=0.027 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCCEEEECCCCCCCCHH----HHHHHHCCCCCCCEEEEE
Q ss_conf 3998999999999998898999---999979999999717999489970789987738----999961434889739999
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFGFMVF---EATSVCEAREFCEKELLPNYLVIDESMEGVLEF----IAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g~~v~---~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l----~~~ir~~~~~~~~pii~l 80 (133)
|....-.+++.+.|++.||+|. ...+++|+...+.++.. |+|.+...=-+..++ ...+|.. ...++. ++.
T Consensus 23 DgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv-~vIgvSsl~g~h~~l~~~lve~lre~-G~~~i~-v~~ 99 (143)
T COG2185 23 DGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDV-DVIGVSSLDGGHLTLVPGLVEALREA-GVEDIL-VVV 99 (143)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHHHHHHHH-CCCCEE-EEE
T ss_conf 544313199999998579379815875899999999986479-88999734404789999999999981-975548-865
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
-+.-.+++..+..+.|++.++.--.+..+....+...+.
T Consensus 100 GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 100 GGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 686681367999981866546899989999999999987
No 87
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=91.39 E-value=0.55 Score=26.26 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=51.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCCEEEECCCCCCC---CHHH-HHHHHCCCCC
Q ss_conf 9779997399899999999999889899999997---9999999717999489970789987---7389-9996143488
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV---CEAREFCEKELLPNYLVIDESMEGV---LEFI-AHVRQMPLGT 73 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g---~eAl~~~~~~~~pdlii~D~~mP~~---~~l~-~~ir~~~~~~ 73 (133)
|++||++|.-..+-..+.++|+..|.+|....+. ...++.+.. ..|+.|++.-- ||- .+.+ ..++.. ..
T Consensus 1 M~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~-~~p~~IVlSPG-PG~P~dag~~~~ii~~~--~~ 76 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT-MSNPVLMLSPG-PGVPSEAGCMPELLTRL--RG 76 (531)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH-CCCCEEEECCC-CCCCHHCCCHHHHHHHH--CC
T ss_conf 9709998288862889999998669956999699831301999972-49596998999-98902365739999986--59
Q ss_pred CCEEEEE
Q ss_conf 9739999
Q gi|254780892|r 74 DVFVYYL 80 (133)
Q Consensus 74 ~~pii~l 80 (133)
.+||+-+
T Consensus 77 ~iPILGI 83 (531)
T PRK09522 77 KLPIIGI 83 (531)
T ss_pred CCCEEEE
T ss_conf 9998998
No 88
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=91.32 E-value=1.2 Score=24.20 Aligned_cols=94 Identities=7% Similarity=0.092 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEECC---HHHHHHHHHHCCCCCEEEECCCCC----CCCHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 89999999999988989999999---799999997179994899707899----87738999961434889739999638
Q gi|254780892|r 11 HIVRKVGRHLFNDFGFMVFEATS---VCEAREFCEKELLPNYLVIDESME----GVLEFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 11 ~~~r~~l~~~L~~~g~~v~~a~~---g~eAl~~~~~~~~pdlii~D~~mP----~~~~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
..-.+++..+|+..||+|.-... .++-++.+.+ ..||+|.+.-.|- .|-++...+++. ..++||++=-+-
T Consensus 102 diGkniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~-~~~divglSallTtTm~~mk~vi~~l~~~--g~~vkv~vGGa~ 178 (213)
T cd02069 102 DIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-HKADIIGLSGLLVPSLDEMVEVAEEMNRR--GIKIPLLIGGAA 178 (213)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC
T ss_conf 121899999999789668850589989999999997-49999998323030499999999999974--998179971632
Q ss_pred CCHHHHHHH---HHCCCCEEEECCCCH
Q ss_conf 998999999---976998899769898
Q gi|254780892|r 84 VDFEKMIAG---ARAGANSFLLKPFNR 107 (133)
Q Consensus 84 ~~~~~~~~a---~~~Ga~~yl~KP~~~ 107 (133)
-+.+...+. --.||+.|-.-....
T Consensus 179 vt~~fa~~~~~~~y~Gad~y~~dA~~a 205 (213)
T cd02069 179 TSRKHTAVKIAPEYDGPVVYVKDASRA 205 (213)
T ss_pred CCHHHHHHHHHHCCCCCCEEECCHHHH
T ss_conf 788899876410367980784399999
No 89
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=90.77 E-value=1.4 Score=23.88 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=53.6
Q ss_pred CCHHHHHHHH-HHCCCCCEEEECCCC------CCC--CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 9979999999-717999489970789------987--7389999614348897399996389989999999769988997
Q gi|254780892|r 32 TSVCEAREFC-EKELLPNYLVIDESM------EGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 32 ~~g~eAl~~~-~~~~~pdlii~D~~m------P~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.+--+++++. +++..|=+|+.|-.. .|. .|+-++..+ -..-.+..||+||.+.-.-..-|.++|+||||.
T Consensus 412 ~dlD~av~qVa~~GgTPLvVc~dn~iyGVIyLKDiVK~Gi~ERF~q-LR~~GikTiM~TGDNrlTAa~IA~EAGVDdFiA 490 (675)
T TIGR01497 412 KDLDEAVDQVAKQGGTPLVVCVDNKIYGVIYLKDIVKSGIKERFEQ-LRKMGIKTIMLTGDNRLTAAVIAKEAGVDDFIA 490 (675)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHH-HHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCC
T ss_conf 3767889998732898479997577898898730137860457888-722586689972897578999997628885201
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 6989899999999
Q gi|254780892|r 103 KPFNRETLRFAMR 115 (133)
Q Consensus 103 KP~~~~~L~~~i~ 115 (133)
-- +||.=...++
T Consensus 491 Ea-~PEdKi~~I~ 502 (675)
T TIGR01497 491 EA-TPEDKIEVIK 502 (675)
T ss_pred CC-CCHHHHHHHH
T ss_conf 58-8367899998
No 90
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.54 E-value=1.4 Score=23.75 Aligned_cols=101 Identities=18% Similarity=0.082 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCCEEEECCCCCC---CCHHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 999999999988989999999--7999999971799948997078998---77389999614348897399996389989
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVFEATS--VCEAREFCEKELLPNYLVIDESMEG---VLEFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~---~~~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
-...+...|++.||+|..... ..+.++...+...||+|......++ ..++++.+|+. .++++||+--.+....
T Consensus 4 Gl~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~--~p~~~iv~GG~h~t~~ 81 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV--LPNVIVVVGGPHATFF 81 (127)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCC
T ss_conf 99999999997899579985787620399998649969999997688999999999999997--8997899859874549
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99999976998899769898999999999
Q gi|254780892|r 88 KMIAGARAGANSFLLKPFNRETLRFAMRE 116 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~ 116 (133)
-...++....||+..-=-...+..-++.
T Consensus 82 -p~~~l~~~~~D~vv~GEGE~t~~~ll~~ 109 (127)
T cd02068 82 -PEEILEEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred -HHHHHHCCCCCEEEECCHHHHHHHHHHH
T ss_conf -9999707587789968689999999999
No 91
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.19 E-value=1.5 Score=23.57 Aligned_cols=104 Identities=18% Similarity=0.062 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCCEEEECCCCCCC----CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 39989999999999988989999---99979999999717999489970789987----738999961434889739999
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFGFMVFE---ATSVCEAREFCEKELLPNYLVIDESMEGV----LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g~~v~~---a~~g~eAl~~~~~~~~pdlii~D~~mP~~----~~l~~~ir~~~~~~~~pii~l 80 (133)
|-...-.+++...|+..||+|.. ..+.++-++.+.++. +|+|-+...+-+. .++...++.. ...++||+ .
T Consensus 10 DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~-ad~IglSsL~g~h~~~~~~l~~~L~e~-G~~di~v~-v 86 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED-VDVIGLSSLSGGHMTLFPEVIELLREL-GAGDILVV-G 86 (122)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCCEEE-E
T ss_conf 62287799999999978976996799889999999999739-989999646554478999999999976-99984699-9
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 6389989999999769988997698989999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i 114 (133)
-+---+++.....+.|++.....--+.++....+
T Consensus 87 GG~Ip~~d~~~l~~~Gv~~vf~pgt~~~~iv~~i 120 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 4564989999999779988989588999999997
No 92
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=89.50 E-value=1.8 Score=23.24 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 9999999717999489970789987-----7389999614348897399996389989999999769988997
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.+.++.+.+...-.++++|+.--|+ .++++.++. ..++|++.--|-.+.++..+..+.|+++.+.
T Consensus 150 ~~~i~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~---~~~~pii~~GGv~~~~di~~l~~~g~~gviv 219 (229)
T pfam00977 150 VEWAKKLEELGAGEILLTDIDRDGTLSGPDLELTRELAE---AVNIPVIASGGVGSLEDLKELFSEGVDGVIA 219 (229)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 344567765167506887750427566689999999997---6899899985899999999999879989998
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=88.34 E-value=1.5 Score=23.61 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred CEEEEECC-HHHHHHHHHHC-------CCCCEEEEC-CCC-CC-C-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 89999999-79999999717-------999489970-789-98-7-7389999614348897399996389989999999
Q gi|254780892|r 26 FMVFEATS-VCEAREFCEKE-------LLPNYLVID-ESM-EG-V-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA 93 (133)
Q Consensus 26 ~~v~~a~~-g~eAl~~~~~~-------~~pdlii~D-~~m-P~-~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~ 93 (133)
+++..|+| |-+-++.+..+ ..+.+-|+| +|| +. . ..|++.+ .++.+++.+|+-|+ +.+..=.=.
T Consensus 88 iEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTL--EEPP~hV~FIlATT--E~~KiP~TI 163 (363)
T TIGR02397 88 IEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTL--EEPPEHVVFILATT--EPHKIPATI 163 (363)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH--CCCCCCEEEEEECC--CHHHCCCCC
T ss_conf 88648656878899999873036875544335887323028656899987652--27987628887348--711205540
Q ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76998899769898999999999999999999998775
Q gi|254780892|r 94 RAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131 (133)
Q Consensus 94 ~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l~ 131 (133)
-+=...|-.|.++.+.+..+++.+.......-+.+.|+
T Consensus 164 lSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~ 201 (363)
T TIGR02397 164 LSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALE 201 (363)
T ss_pred EEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 21000312678998999999999998708831778999
No 94
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=87.56 E-value=1.3 Score=24.00 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCCCEEEEC-CCCC---CCC---HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 9999999717999489970-7899---877---3899996143488973999963899899999997
Q gi|254780892|r 35 CEAREFCEKELLPNYLVID-ESME---GVL---EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D-~~mP---~~~---~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~ 94 (133)
++|.+.+.... .|+||+| +.-| |++ |+...|+..|... -|+|||.+-+.......+
T Consensus 104 ~~a~~~~~~~~-~dlvLLDE~~~~l~~GyL~veeV~~~L~~kp~~~---~vvlTGR~aP~~L~~~AD 166 (191)
T TIGR00708 104 QKAKEVLADSE-YDLVLLDELTVALKFGYLDVEEVVEVLQEKPKSQ---HVVLTGRGAPQELVELAD 166 (191)
T ss_pred HHHHHHHCCCC-CCEEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCC---EEEEECCCCCHHHHHHCC
T ss_conf 99999864988-7764034234555348978899999985584567---788866878688997515
No 95
>PRK03220 consensus
Probab=86.76 E-value=2.6 Score=22.20 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE------C
Q ss_conf 9999999717999489970789987-----7389999614348897399996389989999999769988997------6
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL------K 103 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~------K 103 (133)
.+.+..+.+...-.++++|+.--|+ +++++.++. ...+|+|.--+-+..++..++.+.|+++.+. +
T Consensus 162 ~~~i~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~~---~~~~piIasGGv~s~~di~~l~~~g~~gv~~g~a~~~~ 238 (257)
T PRK03220 162 VEWAARGAELGVGEILLNSMDADGTKAGFDLEMLRAVRA---AVTVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFG 238 (257)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 999999862698889999886866023789699999997---48999899878999999999997899799874687889
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9898999999999
Q gi|254780892|r 104 PFNRETLRFAMRE 116 (133)
Q Consensus 104 P~~~~~L~~~i~~ 116 (133)
-++..++...+++
T Consensus 239 ~~s~~~~k~~l~~ 251 (257)
T PRK03220 239 ELTIGQVKAALAA 251 (257)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9889999999998
No 96
>PRK04195 replication factor C large subunit; Provisional
Probab=84.62 E-value=3.4 Score=21.57 Aligned_cols=104 Identities=11% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHHCCCEEEEECCH----HHHHHHH----HH-C----CCCCEEEEC-C-CCCC-C-CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999889899999997----9999999----71-7----999489970-7-8998-7-738999961434889739999
Q gi|254780892|r 18 RHLFNDFGFMVFEATSV----CEAREFC----EK-E----LLPNYLVID-E-SMEG-V-LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 18 ~~~L~~~g~~v~~a~~g----~eAl~~~----~~-~----~~pdlii~D-~-~mP~-~-~~l~~~ir~~~~~~~~pii~l 80 (133)
..+.+.+||++.+..-. .+.++.. .. . ....+||+| . .|.+ . .+..+.+...-+....|||++
T Consensus 58 ~~lAk~~g~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~~PiIli 137 (403)
T PRK04195 58 HALANDYGWEVIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKAKNPIILT 137 (403)
T ss_pred HHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999849985997710114789999999987606887788734999634344572444799999999985488708998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
.. +......+.+..-+..+-.+|++...+..+++++.....
T Consensus 138 ~N-d~~~~~~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Eg 178 (403)
T PRK04195 138 AN-DPYDPSLRPLRNACLMIEFKRLSKRSIVPVLKRICRKEG 178 (403)
T ss_pred EC-CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 26-845567177997661221799499999999999999769
No 97
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.37 E-value=3.4 Score=21.50 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=54.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 79997399899999999999889899999997-9999999717999489970789987-738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g-~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~l 80 (133)
..+++|.|+...+. +++.|+++...+-. .+-++.+.- ....++++-+.-|.. ....+.+|+. .++++|+.-
T Consensus 442 ~~vvid~d~~~v~~----~~~~g~~v~~GDa~~~~~L~~agi-~~A~~vvit~~d~~~~~~iv~~~r~~--~p~~~IiaR 514 (558)
T PRK10669 442 PLVVIETSRTRVDE----LRERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGYEAGEIVASAREK--NPDIEIIAR 514 (558)
T ss_pred CEEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCC-CCCCEEEEEECCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 88999898999999----996899799978998899985791-32499999819889999999999987--869869999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 63899899999997699889976
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~K 103 (133)
+. +.++..+-.++||+..+.-
T Consensus 515 a~--~~~~~~~L~~aGA~~VV~~ 535 (558)
T PRK10669 515 AH--YDDEVAYITERGANQVVMG 535 (558)
T ss_pred EC--CHHHHHHHHHCCCCEEECC
T ss_conf 79--8999999997799989893
No 98
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=83.44 E-value=3.8 Score=21.27 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=47.3
Q ss_pred CCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE-C-----CCCHHHHHHHH
Q ss_conf 9489970789987-----7389999614348897399996389989999999769988997-6-----98989999999
Q gi|254780892|r 47 PNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL-K-----PFNRETLRFAM 114 (133)
Q Consensus 47 pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~-K-----P~~~~~L~~~i 114 (133)
-.++++|+.--|+ .++++.+++ ...+|+|..-|-+..++..++.+.|+++.+. | -++..++...+
T Consensus 167 geil~tdI~rDGt~~G~d~~l~~~i~~---~~~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s~~e~k~~L 242 (252)
T PRK13597 167 GEILLTSMDRDGTKEGYDLRLTRMVAE---AVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPELKRYL 242 (252)
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHH
T ss_conf 999997573768444769599999985---0799899978989999999998789969987127677999999999999
No 99
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=83.22 E-value=3.4 Score=21.55 Aligned_cols=57 Identities=18% Similarity=0.061 Sum_probs=46.0
Q ss_pred CCEEEECCCCCC-----CCHHHHHHHHCCCCCCCEEEEEECCCCHH----HHHHHHHCCCCEEEEC
Q ss_conf 948997078998-----77389999614348897399996389989----9999997699889976
Q gi|254780892|r 47 PNYLVIDESMEG-----VLEFIAHVRQMPLGTDVFVYYLLMEVDFE----KMIAGARAGANSFLLK 103 (133)
Q Consensus 47 pdlii~D~~mP~-----~~~l~~~ir~~~~~~~~pii~lT~~~~~~----~~~~a~~~Ga~~yl~K 103 (133)
|.+=++-+.||. -.+.++..+......++|-|++|+.-+.+ ...-|+++||++||.-
T Consensus 198 ~GadvlKvevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~G 263 (306)
T COG3684 198 SGADVLKVEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAG 263 (306)
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 787569862330026761999999987404778986988467667775899999997388606743
No 100
>PRK07206 hypothetical protein; Provisional
Probab=83.12 E-value=3.4 Score=21.55 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=64.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-------------------------HHHHHHHHHCCCCCEEEEC--
Q ss_conf 9779997399899999999999889899999997-------------------------9999999717999489970--
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-------------------------CEAREFCEKELLPNYLVID-- 53 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g-------------------------~eAl~~~~~~~~pdlii~D-- 53 (133)
||+|+|||--.+-+ .+...+...||.+..+.|. .+.++.+++ ..|+.||.-
T Consensus 2 ~~~vviVDp~StG~-~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~aVi~g~E 79 (415)
T PRK07206 2 MKKVVIVDPFSSGK-FLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRIIKHIDETIEFLRQ-LGPDAVIAGAE 79 (415)
T ss_pred CCEEEEECCCCCHH-HHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH-CCCCEEEECCH
T ss_conf 85599986765187-99999997398289998379884354423243434332105789999999986-29729997855
Q ss_pred ------------CCCCC--CCHHHHHH------H---HCCCCCCCEEEEEECCCCHHHHHHHHHC-C--CCEEEECCCC-
Q ss_conf ------------78998--77389999------6---1434889739999638998999999976-9--9889976989-
Q gi|254780892|r 54 ------------ESMEG--VLEFIAHV------R---QMPLGTDVFVYYLLMEVDFEKMIAGARA-G--ANSFLLKPFN- 106 (133)
Q Consensus 54 ------------~~mP~--~~~l~~~i------r---~~~~~~~~pii~lT~~~~~~~~~~a~~~-G--a~~yl~KP~~- 106 (133)
+.+|. .......- | +....+.+.....+ +.++...+.+. | ...++.||.+
T Consensus 80 ~gV~lAd~La~~LgLp~~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~---~~~e~~~~~~~~~~~~~PvVvKP~~g 156 (415)
T PRK07206 80 SGVELADRLAERLGLCYANAPALSSARRNKYEMINALANAGLPAIRQIDTA---DWEEASAWIRVNNLWDSPVVIKPLES 156 (415)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECC---CHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 659999999998689989955688774599999999997599855388529---99999999986055799989958999
Q ss_pred -----------HHHHHHHHHHHHH
Q ss_conf -----------8999999999999
Q gi|254780892|r 107 -----------RETLRFAMRELPQ 119 (133)
Q Consensus 107 -----------~~~L~~~i~~~~~ 119 (133)
.+++..++.+++.
T Consensus 157 agS~gV~~c~~~~el~~a~~~i~~ 180 (415)
T PRK07206 157 AGSDGVFFCPDKQDAYHAFNAILG 180 (415)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHC
T ss_conf 987998997999999999999856
No 101
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=82.98 E-value=2.3 Score=22.59 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=41.0
Q ss_pred HHCCCCCEEEECCCC-----------CCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE--CCCCH
Q ss_conf 717999489970789-----------9877389999614348897399996389989999999769988997--69898
Q gi|254780892|r 42 EKELLPNYLVIDESM-----------EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL--KPFNR 107 (133)
Q Consensus 42 ~~~~~pdlii~D~~m-----------P~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~--KP~~~ 107 (133)
.++..|=+|+-|-.+ ||.-|=..++|+ -.+..||+|+.+...-..-|.++|++||+. ||-+.
T Consensus 424 ~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~----MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAeatPEdK 498 (681)
T COG2216 424 RLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRK----MGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPEDK 498 (681)
T ss_pred HCCCCCEEEEECCEEEEEEEEHHHCCHHHHHHHHHHHH----CCCEEEEEECCCHHHHHHHHHHHCCHHHHHCCCHHHH
T ss_conf 55897449988999999998643135348999999996----5975999808977779999987180146552895889
No 102
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=82.70 E-value=4 Score=21.09 Aligned_cols=103 Identities=17% Similarity=0.048 Sum_probs=66.8
Q ss_pred HHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCCEEEECCCCCCC--CHH--HHHHHHCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 99999988989999999--79999999717999489970789987--738--9999614348897399996389989999
Q gi|254780892|r 17 GRHLFNDFGFMVFEATS--VCEAREFCEKELLPNYLVIDESMEGV--LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMI 90 (133)
Q Consensus 17 l~~~L~~~g~~v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~~--~~l--~~~ir~~~~~~~~pii~lT~~~~~~~~~ 90 (133)
..+.|-+.||.|.-..+ ..-|-+ ++.-. -..++=|--|=| .|+ -..+|..-+..++|+|+=-|-+.+.+..
T Consensus 129 Aae~Lv~eGF~VlpY~~dD~v~akr-Le~~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e~~~vPvIVDAGiG~pSdAa 205 (267)
T CHL00162 129 AAEFLVRKGFTVLPYINADPVLAKQ-LEDIG--CATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHH-HHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 9999997899998954899899999-98659--86886345512368875899999999964899889968989678889
Q ss_pred HHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999769988997-----69898999999999999999
Q gi|254780892|r 91 AGARAGANSFLL-----KPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 91 ~a~~~Ga~~yl~-----KP~~~~~L~~~i~~~~~~~~ 122 (133)
+||+.|++..|. +--++..+..+++...+--+
T Consensus 206 ~aMElG~DaVL~NTAIA~A~dPv~MA~A~k~AV~AGR 242 (267)
T CHL00162 206 QAMELGASGVLLNTAVAKAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9997467778701676716998999999999999999
No 103
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=82.66 E-value=4.1 Score=21.08 Aligned_cols=94 Identities=18% Similarity=0.096 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCCEEEECCCCCC----CCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 3998999999999998898999---99997999999971799948997078998----7738999961434889739999
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFGFMVF---EATSVCEAREFCEKELLPNYLVIDESMEG----VLEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g~~v~---~a~~g~eAl~~~~~~~~pdlii~D~~mP~----~~~l~~~ir~~~~~~~~pii~l 80 (133)
|....-++.+...+...||+|. ...+++|+.+....+.. ++|.+...=.+ ..++++.+|+. ...++|||+
T Consensus 593 DGHdrGak~iA~~f~D~GfdV~~~~lfqTPeE~a~~A~e~dv-hvigisslaa~h~tLVP~l~~~Lk~~-g~~di~Vvv- 669 (715)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDV-HVVGVSSLAAGHKTLVPALIEALKKL-GREDIMVVV- 669 (715)
T ss_pred CCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHHC-CCCCCEEEE-
T ss_conf 721002789998887576068616755899999999997599-99998233454421279999999964-998867998-
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 638998999999976998899769
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKP 104 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP 104 (133)
-+---+++.....++|+..++.--
T Consensus 670 GGvIP~~D~~~L~~~GV~~if~Pg 693 (715)
T PRK09426 670 GGVIPPQDYDFLYEAGVAAIFGPG 693 (715)
T ss_pred CCCCCHHHHHHHHHCCCCEEECCC
T ss_conf 386887999999976977785899
No 104
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=82.33 E-value=4.2 Score=21.01 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCCEEEECCCC----CCCCHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 9899999999999889899999---9979999999717999489970789----98773899996143488973999963
Q gi|254780892|r 10 SHIVRKVGRHLFNDFGFMVFEA---TSVCEAREFCEKELLPNYLVIDESM----EGVLEFIAHVRQMPLGTDVFVYYLLM 82 (133)
Q Consensus 10 ~~~~r~~l~~~L~~~g~~v~~a---~~g~eAl~~~~~~~~pdlii~D~~m----P~~~~l~~~ir~~~~~~~~pii~lT~ 82 (133)
-+.-...+...|+..||+|... .+.++-.+.+.+ ..||+|-+...+ +...++++.+|+. .++++|++--.
T Consensus 13 ~plGl~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~-~~pdiVgiS~~~~~~~~~~~~l~~~ik~~--~p~~~iv~GG~ 89 (121)
T pfam02310 13 HPLGLNYVAAALRAAGFEVILLGADVPPEDIVEAIRA-ENPDVVGLSALMTTNLPAAKELARLLKRI--RPGVKVVVGGP 89 (121)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEECC
T ss_conf 8489999999999859950010247999999999998-09999999523211211368999999985--98975998387
Q ss_pred CCCHHHHHHHHH--CCCCEEEECC
Q ss_conf 899899999997--6998899769
Q gi|254780892|r 83 EVDFEKMIAGAR--AGANSFLLKP 104 (133)
Q Consensus 83 ~~~~~~~~~a~~--~Ga~~yl~KP 104 (133)
+... ...+.++ .|+ ||+..-
T Consensus 90 ~~t~-~p~~~l~~~~~~-D~vv~G 111 (121)
T pfam02310 90 HPTA-DPEEVLRAAPGI-DDVVRG 111 (121)
T ss_pred CCCC-CHHHHHHCCCCC-CEEEEC
T ss_conf 6341-899998408997-589989
No 105
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=82.16 E-value=3.9 Score=21.21 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=52.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCC--CCCCHH-HHHHHHCCCCCCCEEEEE
Q ss_conf 99973998999999999998898999999979999999717999489970789--987738-999961434889739999
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EGVLEF-IAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~m--P~~~~l-~~~ir~~~~~~~~pii~l 80 (133)
||++|--..+-..+.+.|+..|.++....+.+-.++.+.+ ..||.|++.--= |...+. ...++.. ...+||+-+
T Consensus 2 ILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~-~~pd~IiLSpGPg~p~~~~~~~~~~~~~--~~~iPILGI 78 (195)
T PRK07649 2 ILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIEN-MKPDFLMISPGPCSPNEAGISMEVIRYF--AGKIPIFGV 78 (195)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-CCCCEEEECCCCCCHHHCCCCHHHHHHH--CCCCCEEEE
T ss_conf 9999589807999999999789979998899689999984-1989899889999957847614679975--289978430
Q ss_pred ECCCCHHHHHHHHHCCCC
Q ss_conf 638998999999976998
Q gi|254780892|r 81 LMEVDFEKMIAGARAGAN 98 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~ 98 (133)
- .....-|...|+.
T Consensus 79 C----lG~Q~ia~~~Gg~ 92 (195)
T PRK07649 79 C----LGHQSIAQVFGGE 92 (195)
T ss_pred C----HHHHHHHHHCCCC
T ss_conf 2----9999999873972
No 106
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.02 E-value=4.3 Score=20.94 Aligned_cols=77 Identities=19% Similarity=0.106 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE------C
Q ss_conf 9999999717999489970789987-----7389999614348897399996389989999999769988997------6
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL------K 103 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~------K 103 (133)
.+.++.+.+...=.++++|+.--|+ .++++++++ ..++|++.--+-...++..+..+.|+++.+. .
T Consensus 151 ~e~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~~~~i~~---~~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al~~g 227 (240)
T PRK13585 151 VEWAQRFEELGAGSILFTNVDVEGLLQGVNPEPVRELVD---SVDIPVIASGGVTSLDDVKALKEAGAAGVVVGSALYKG 227 (240)
T ss_pred HHHHHHHHHCCCCEEEEEEECCHHHHCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 577788886387358986423322325789899999998---68999999889999999999997899789987687679
Q ss_pred CCCHHHHHHHH
Q ss_conf 98989999999
Q gi|254780892|r 104 PFNRETLRFAM 114 (133)
Q Consensus 104 P~~~~~L~~~i 114 (133)
-++.++..+.+
T Consensus 228 ~i~l~e~~~~~ 238 (240)
T PRK13585 228 KFTLEEALEAA 238 (240)
T ss_pred CCCHHHHHHHH
T ss_conf 97899999996
No 107
>PRK06101 short chain dehydrogenase; Provisional
Probab=81.51 E-value=4.5 Score=20.83 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=45.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 977999739989999999999988989999999799999997179994899707899877389999
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHV 66 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~i 66 (133)
||+|||.=-+.=+...+...|-..|++|..+.-.++.++.+.+... ++.....+.-+..+..+.+
T Consensus 1 MktvlITGassGIG~a~A~~la~~G~~Vi~~~R~~~~l~~~~~~~~-~~~~~~~Dvtd~~~~~~~~ 65 (241)
T PRK06101 1 MTSVLITGATSGIGKQLALDYAKAGWKVIACGRNEAVLDELHDQSS-NIFTLAFDVTDYEETKAAL 65 (241)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCC-CEEEEEEECCCHHHHHHHH
T ss_conf 9989992240499999999999879989999899999999997328-8048985226799999999
No 108
>PRK08904 consensus
Probab=81.44 E-value=4.5 Score=20.81 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=56.2
Q ss_pred HHHHHHHCCC-EEEEECCHHHHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 9999998898-9999999799999997---17999489970789987738999961434889739999638998999999
Q gi|254780892|r 17 GRHLFNDFGF-MVFEATSVCEAREFCE---KELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG 92 (133)
Q Consensus 17 l~~~L~~~g~-~v~~a~~g~eAl~~~~---~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a 92 (133)
.+++|...+. -|....|.++|++.++ .+.. .++=+-++-|+..+.++.++++ .+++- |-.-+--+.++..++
T Consensus 3 ~~~~L~~~~iipVir~~~~~~a~~~a~al~~~Gi-~~iEiTlrtp~a~~~i~~l~~~--~p~~~-vGaGTVl~~e~~~~a 78 (207)
T PRK08904 3 PREILTAGAVVPVMAIDDLSTAVDLSRALVEGGI-PTLEITLRTPVGLDAIRLIAKE--VPNAI-VGAGTVTNPEQLKAV 78 (207)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHH--CCCCE-EEEEECCCHHHHHHH
T ss_conf 7999986997999976999999999999998799-8899957991399999999986--89876-855313689999999
Q ss_pred HHCCCCEEEECCCCHHHHHHH
Q ss_conf 976998899769898999999
Q gi|254780892|r 93 ARAGANSFLLKPFNRETLRFA 113 (133)
Q Consensus 93 ~~~Ga~~yl~KP~~~~~L~~~ 113 (133)
.++||+ |++-|....++...
T Consensus 79 ~~aGA~-FiVSP~~~~~v~~~ 98 (207)
T PRK08904 79 EDAGAV-FAISPGLHESLAKA 98 (207)
T ss_pred HHCCCC-EEECCCCCHHHHHH
T ss_conf 984999-99848998999999
No 109
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=81.10 E-value=3.4 Score=21.54 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.9
Q ss_pred EEEECCCHH---------HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHC-CCCCEEEECCCCC
Q ss_conf 999739989---------9999999999889899999997------9999999717-9994899707899
Q gi|254780892|r 4 LLLVDSSHI---------VRKVGRHLFNDFGFMVFEATSV------CEAREFCEKE-LLPNYLVIDESME 57 (133)
Q Consensus 4 ILiVDD~~~---------~r~~l~~~L~~~g~~v~~a~~g------~eAl~~~~~~-~~pdlii~D~~mP 57 (133)
|+|+|+|.. ...-+..-++.+||+|.++.+| .+|++.+... ..|-+|++.-.+-
T Consensus 177 i~i~D~N~iqidG~t~~~~~ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~~~kPt~Ii~~TiiG 246 (333)
T pfam00456 177 IAFYDDNRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLIICRTVIG 246 (333)
T ss_pred EEEECCCCEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 9997457542179845355510999987649079994699999999999999986589981698642151
No 110
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=80.83 E-value=4.7 Score=20.69 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=51.3
Q ss_pred CCEEEEECC----CHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 977999739----98999999999998898999-9999799999997179994899707899877389999614348897
Q gi|254780892|r 1 MDSLLLVDS----SHIVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDV 75 (133)
Q Consensus 1 m~~ILiVDD----~~~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~ 75 (133)
||+||+|=. ....-+-++...+..|+++. .|....|+-+.+....+ |++++--+.--.. ..++......++
T Consensus 1 MkKILLvCaaGMSTSmlv~km~~~A~~~G~dveI~Av~~~e~~~~i~~~~y-Dv~LlgPQVr~~~---~~~k~~a~~~gi 76 (104)
T PRK09590 1 MAKALIICAAGMSSSLMAKKTTEFLKGKGKDIEVDAISATEGGKAIAAAAF-DLYLVSPQTKMYF---KQFEEAGSKAGK 76 (104)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCC-CEEEECHHHHHHH---HHHHHHHHHCCC
T ss_conf 955999968998799999999999997698369998488898876322688-7899887688789---999999987299
Q ss_pred EEEEEEC
Q ss_conf 3999963
Q gi|254780892|r 76 FVYYLLM 82 (133)
Q Consensus 76 pii~lT~ 82 (133)
||.++-.
T Consensus 77 Pv~vI~~ 83 (104)
T PRK09590 77 PVVQIPP 83 (104)
T ss_pred CEEEECC
T ss_conf 7788787
No 111
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=80.30 E-value=4.1 Score=21.04 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=53.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC---CHH-HHHHHHCCCCCCCEEEE
Q ss_conf 99973998999999999998898999999979999999717999489970789987---738-99996143488973999
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV---LEF-IAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~---~~l-~~~ir~~~~~~~~pii~ 79 (133)
||+||--..+-..+.+.|+..|.++....+.+-.++.+.. ..||.|++.-- ||- .+. ...++.. ...+||+-
T Consensus 2 ILiIDn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~i~~-~~p~~IvlSpG-Pg~P~~~~~~~~~i~~~--~~~iPiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA-LKPQKIVISPG-PCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-CCCCEEEECCC-CCCHHHCCCCHHHHHHH--CCCCCEEE
T ss_conf 9999689818999999998779979999389899999984-29897999999-99958908404689975--38998899
Q ss_pred EECCCCHHHHHHHHHCCCC
Q ss_conf 9638998999999976998
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGAN 98 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~ 98 (133)
+- .....-|...|+.
T Consensus 78 IC----lG~Q~ia~~~Gg~ 92 (187)
T PRK08007 78 VC----LGHQAMAQAFGGK 92 (187)
T ss_pred EC----HHHHHHHHHCCCE
T ss_conf 87----9999999980980
No 112
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=80.03 E-value=5 Score=20.53 Aligned_cols=101 Identities=17% Similarity=0.061 Sum_probs=66.9
Q ss_pred HHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCCEEEECCCCCCC--CH-----HHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 99999988989999999--79999999717999489970789987--73-----89999614348897399996389989
Q gi|254780892|r 17 GRHLFNDFGFMVFEATS--VCEAREFCEKELLPNYLVIDESMEGV--LE-----FIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 17 l~~~L~~~g~~v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~~--~~-----l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
..+.|-..||.|.-..+ .--|-+ ++.-. -..+|=|--|=| .| .++.|+. ..++|+|+=-|-+.+.
T Consensus 114 Aae~Lv~eGF~VlpY~~~D~v~akr-Led~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e---~~~vPvIVDAGiG~pS 187 (246)
T pfam05690 114 AAEILVKEGFTVLPYTTDDPVLARR-LEEAG--CAAVMPLGAPIGSGLGLRNPENLRIIIE---EADVPVIVDAGIGTPS 187 (246)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHH-HHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHH
T ss_conf 9999997899898861799899999-98759--8498622440136888689999999999---6799889848989678
Q ss_pred HHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999769988997-----698989999999999999999
Q gi|254780892|r 88 KMIAGARAGANSFLL-----KPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl~-----KP~~~~~L~~~i~~~~~~~~~ 123 (133)
+..+||+.|++..|. +--++..+..+++...+--+.
T Consensus 188 ~Aa~aMElG~DaVLvNTAIA~A~dPv~MA~A~~~Av~AGR~ 228 (246)
T pfam05690 188 DAAQAMELGADAVLLNTAIARAKDPVAMARAFKLAVEAGRL 228 (246)
T ss_pred HHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999974567777306777379989999999999999999
No 113
>pfam00563 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Probab=79.81 E-value=5.1 Score=20.48 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCCEEEECCCCC------CCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 98999999999998898999--9999799999997179994899707899------877389999614348897399996
Q gi|254780892|r 10 SHIVRKVGRHLFNDFGFMVF--EATSVCEAREFCEKELLPNYLVIDESME------GVLEFIAHVRQMPLGTDVFVYYLL 81 (133)
Q Consensus 10 ~~~~r~~l~~~L~~~g~~v~--~a~~g~eAl~~~~~~~~pdlii~D~~mP------~~~~l~~~ir~~~~~~~~pii~lT 81 (133)
+......++. |+..|+.+. .+.+|...+..+.. ..||.|=+|-.+- +...+++.+.......++++| .+
T Consensus 130 ~~~~~~~i~~-lk~~G~~iaiDdfG~~~~~~~~l~~-l~~d~iKid~~~~~~~~~~~~~~~~~~l~~~a~~~~~~vi-ae 206 (233)
T pfam00563 130 DLRLLEALAR-LRSLGFRLALDDFGTGYSSLSYLSR-LPPDYIKIDRSFIKDLSDPESRALLRALIALARELGIKVV-AE 206 (233)
T ss_pred CHHHHHHHHH-HHHCCCCEEECCCCCCCCCHHHHHH-CCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE-EE
T ss_conf 1999999999-9977995896178999767789974-8887899989998407772189999999999998799899-97
Q ss_pred CCCCHHHHHHHHHCCCCE----EEECC
Q ss_conf 389989999999769988----99769
Q gi|254780892|r 82 MEVDFEKMIAGARAGANS----FLLKP 104 (133)
Q Consensus 82 ~~~~~~~~~~a~~~Ga~~----yl~KP 104 (133)
+-.+.+....+.+.|++. |+.||
T Consensus 207 GVE~~~~~~~l~~~Gv~~~QG~~~~~P 233 (233)
T pfam00563 207 GVETEEQLELLKELGIDYVQGYLFSKP 233 (233)
T ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 086399999999759998316810279
No 114
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=79.48 E-value=4.1 Score=21.05 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=20.2
Q ss_pred HHHHHHHCCCEEEEECCH-----HHHHHHHHH-CCCCCEEEECCC
Q ss_conf 999999889899999997-----999999971-799948997078
Q gi|254780892|r 17 GRHLFNDFGFMVFEATSV-----CEAREFCEK-ELLPNYLVIDES 55 (133)
Q Consensus 17 l~~~L~~~g~~v~~a~~g-----~eAl~~~~~-~~~pdlii~D~~ 55 (133)
+..-++.+||+|.++.-- .+|++...+ +..|.+||+|..
T Consensus 197 L~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tv 241 (243)
T COG3959 197 LADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTV 241 (243)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 078888438068997584799999999841135899869997356
No 115
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=79.48 E-value=5.2 Score=20.42 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=40.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHHHCCCCCEEEECCCCC-CCC
Q ss_conf 97799973998999999999998898--999-9999799999997179994899707899-877
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGF--MVF-EATSVCEAREFCEKELLPNYLVIDESME-GVL 60 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~--~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP-~~~ 60 (133)
+.++..||-|......+++-++..|. ++. ...+...++..+.....+|+|++|-=-. +..
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~ 129 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLL 129 (187)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCCCCCHH
T ss_conf 8569999659899999999999848761259984008999872277885128996899753606
No 116
>PRK08782 consensus
Probab=79.02 E-value=5.4 Score=20.33 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHCCC-EEEEECCHHHHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHH
Q ss_conf 99999999998898-9999999799999997---1799948997078998773899996143488973999963899899
Q gi|254780892|r 13 VRKVGRHLFNDFGF-MVFEATSVCEAREFCE---KELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEK 88 (133)
Q Consensus 13 ~r~~l~~~L~~~g~-~v~~a~~g~eAl~~~~---~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~ 88 (133)
...-..++|+..|. -|....+.++|.+.++ .+.. .++=+-++-|+..+.++.+++. .+++. +-..+--+.+.
T Consensus 6 ~~~~~~~~L~~~~iipVir~~~~~~a~~~~eal~~gGi-~~iEiTlrt~~a~~~i~~l~~~--~p~~~-vGaGTV~~~e~ 81 (219)
T PRK08782 6 TQNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGL-PAIELTLRTPVAIEALAMLKRE--LPNIV-IGAGTVLSERQ 81 (219)
T ss_pred HHCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHH--CCCCE-EEEEEECCHHH
T ss_conf 22559999987897899975999999999999998799-8799967993399999999986--89947-99997058999
Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 99999769988997698989999999
Q gi|254780892|r 89 MIAGARAGANSFLLKPFNRETLRFAM 114 (133)
Q Consensus 89 ~~~a~~~Ga~~yl~KP~~~~~L~~~i 114 (133)
..++.++|| +|++-|....++....
T Consensus 82 ~~~a~~aGA-~FiVSP~~~~~v~~~a 106 (219)
T PRK08782 82 LRQSVDAGA-DFLVTPGTPAPLARLL 106 (219)
T ss_pred HHHHHHCCC-CEEECCCCCHHHHHHH
T ss_conf 999998499-8998789979999999
No 117
>PRK00208 thiG thiazole synthase; Reviewed
Probab=78.81 E-value=5.5 Score=20.29 Aligned_cols=100 Identities=15% Similarity=0.038 Sum_probs=66.3
Q ss_pred HHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCCEEEECCCCCCC--CH-----HHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 99999988989999999--79999999717999489970789987--73-----89999614348897399996389989
Q gi|254780892|r 17 GRHLFNDFGFMVFEATS--VCEAREFCEKELLPNYLVIDESMEGV--LE-----FIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 17 l~~~L~~~g~~v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~~--~~-----l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
..+.|-..||.|.-..+ .--|-+ ++.-. -..++=|--|=| .| .++.|+. ..++|||+=-|-+.+.
T Consensus 116 Aae~Lv~eGF~VlpY~~~D~v~akr-Le~~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e---~~~vPvIVDAGiG~pS 189 (256)
T PRK00208 116 AAEILVKEGFVVLPYCTDDPVLAKR-LEEAG--CAAVMPLGAPIGSGLGLLNPYNLRIIIE---QADVPVIVDAGIGTPS 189 (256)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHH-HHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHH
T ss_conf 9999998899897867889899999-99749--5345204564347988799999999998---6799889857889766
Q ss_pred HHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999769988997-----69898999999999999999
Q gi|254780892|r 88 KMIAGARAGANSFLL-----KPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl~-----KP~~~~~L~~~i~~~~~~~~ 122 (133)
+..+||+.|++..|. +--++-.+..+++...+--+
T Consensus 190 ~Aa~AMElG~DaVL~NTAIA~A~dPv~MA~A~~~AV~AGR 229 (256)
T PRK00208 190 DAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 229 (256)
T ss_pred HHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 7899986255432355687726998999999999999999
No 118
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.32 E-value=5.7 Score=20.21 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE-CC
Q ss_conf 979999999717999489970789987-----7389999614348897399996389989999999769988997-69
Q gi|254780892|r 33 SVCEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL-KP 104 (133)
Q Consensus 33 ~g~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~-KP 104 (133)
+..+.++.+..-..-.++++|+.--|+ +++++++.+ ..++|++.--+-+..++..+..+.|+.+.+. |-
T Consensus 149 ~~~d~~~~~~~~g~~~il~TdI~rDGtl~G~n~el~~~i~~---~~~~pvIaSGGv~sl~Di~~L~~~gv~GvIvGkA 223 (234)
T PRK13587 149 NLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKA 223 (234)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 79999999974398789984026657455799999999997---6799999989989999999999889989999975
No 119
>PRK05670 anthranilate synthase component II; Provisional
Probab=78.15 E-value=4.6 Score=20.76 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=49.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC---CH-HHHHHHHCCCCCCCEEEE
Q ss_conf 99973998999999999998898999999979999999717999489970789987---73-899996143488973999
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV---LE-FIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~---~~-l~~~ir~~~~~~~~pii~ 79 (133)
|||||-....-..+.+.|+..|..|....+.+-..+.+.. ..||.|++. .=||- .+ ....++.. ...+||+-
T Consensus 2 iLiiD~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~~i~~-~~pdgiiLS-~GPg~P~~~~~~~~~i~~~--~~~iPiLG 77 (192)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA-LAPDAIVLS-PGPGTPAEAGISLELIREF--AGKVPILG 77 (192)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-CCCCEEEEC-CCCCCHHHCCCHHHHHHHH--CCCCCEEE
T ss_conf 9999689868999999998689969999899899999985-098989999-9999936605549999973--46997899
Q ss_pred EECCCCHHHHHHHHHCCCC
Q ss_conf 9638998999999976998
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGAN 98 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~ 98 (133)
+- .....-|...|+.
T Consensus 78 IC----lG~Qlia~~~Gg~ 92 (192)
T PRK05670 78 VC----LGHQAIGEAFGGK 92 (192)
T ss_pred EE----HHHHHHHHHCCCE
T ss_conf 84----7789999871973
No 120
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=78.02 E-value=5.3 Score=20.41 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=46.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCCHH-HHHHHHCCCCCCCEEEEE
Q ss_conf 9997399899999999999889899999997999999971799948997078--9987738-999961434889739999
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES--MEGVLEF-IAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~--mP~~~~l-~~~ir~~~~~~~~pii~l 80 (133)
|||||-...+-..+.+.|+..|.+|....+.+-.++.+.+ ..||.|++.-- -|.-.+. ...++.. ...+||+-+
T Consensus 2 ILiiDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~i~~-~~p~~ivLSpGPG~P~~~~~~~~~i~~~--~~~iPILGI 78 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ-LAPSHVVISPGPCTPNEAGISLAVIRHF--ADKLPILGV 78 (191)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-CCCCEEEECCCCCCHHHHCCHHHHHHHH--CCCCCEEEE
T ss_conf 9999699976999999998779959998699889999985-3999699999998967907306899974--469978861
No 121
>PRK13180 consensus
Probab=77.37 E-value=5.6 Score=20.23 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 977999739989999999999988989999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~e 36 (133)
|++|.|+|=-.-+...+.+.|+..|+++....+..+
T Consensus 1 MkkI~IiDyg~gNi~Sv~~al~~~g~~~~i~~~~~~ 36 (209)
T PRK13180 1 MKRVVVLDYGSGNLRSAQRALERVGAEVEVTADPDA 36 (209)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 977999978943899999999986998999799999
No 122
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.25 E-value=6.1 Score=20.02 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=54.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCCEEEECCCCCC-CCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 79997399899999999999889899999997-999999971799948997078998-7738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESMEG-VLEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g-~eAl~~~~~~~~pdlii~D~~mP~-~~~l~~~ir~~~~~~~~pii~l 80 (133)
+..++|.|+..-+. +++.|++++.-+-. .+-++.+--+ .-.++++-+.=|. .....+..|++ +|++||+.-
T Consensus 425 ~~vviD~d~~~V~~----~r~~G~~v~yGDat~~~vL~~AGi~-~A~~vViai~d~~~~~~iv~~~r~~--~P~l~I~aR 497 (602)
T PRK03659 425 RITVLERDISAVNL----MRKYGYKVYYGDATQLELLRAAGAE-KAEAIVITCNEPEDTMKLVELCQQH--FPHLHILAR 497 (602)
T ss_pred CEEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 98999786799999----9978990897589999999867904-0588999829899999999999987--869969998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 63899899999997699889976989
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
+- +..+..+-.++||++++.--|.
T Consensus 498 ar--~~~~~~~L~~~Ga~~vv~Et~e 521 (602)
T PRK03659 498 AR--GRVEAHELLQAGVTQFSRETFS 521 (602)
T ss_pred EC--CHHHHHHHHHCCCCEEECCHHH
T ss_conf 69--7899999997899978662789
No 123
>KOG4175 consensus
Probab=77.07 E-value=3.4 Score=21.56 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCCCCCEEEEEECC------CCHHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 434889739999638------9989999999769988997698989999
Q gi|254780892|r 69 MPLGTDVFVYYLLME------VDFEKMIAGARAGANSFLLKPFNRETLR 111 (133)
Q Consensus 69 ~~~~~~~pii~lT~~------~~~~~~~~a~~~Ga~~yl~KP~~~~~L~ 111 (133)
.+.+-..||++++-| +.......+.++||++||.-.+-+++-.
T Consensus 90 r~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~ 138 (268)
T KOG4175 90 RPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAE 138 (268)
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHH
T ss_conf 0468630266220144887640789999999658774585068868989
No 124
>PRK06953 short chain dehydrogenase; Provisional
Probab=76.47 E-value=6.4 Score=19.89 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=53.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEE
Q ss_conf 977999739989999999999988989999999799999997179994899707899877-3899996143488973999
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~ 79 (133)
||++||.=-+.=+-..+.+.|-..|++|.......++++.+.... ...+-+|+.=|... .+..++. ...+.+++
T Consensus 1 MK~~LVTGas~GIG~a~a~~la~~G~~V~~~~R~~~~l~~l~~~~-~~~~~~Dv~d~~~v~~~~~~~~----~~~ldili 75 (222)
T PRK06953 1 MKTVLIVGASRGIGLEFVRQYRADGWRVIATARDAAGLAALRALG-AEALALDVADPESIAGLGWKLD----GEALDAAV 75 (222)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHC----CCCCCEEE
T ss_conf 999999475729999999999988899999968888899988421-5177740589999999998623----67767899
Q ss_pred EEC
Q ss_conf 963
Q gi|254780892|r 80 LLM 82 (133)
Q Consensus 80 lT~ 82 (133)
.-+
T Consensus 76 ~nA 78 (222)
T PRK06953 76 YVA 78 (222)
T ss_pred EEC
T ss_conf 816
No 125
>CHL00101 trpG anthranilate synthase component 2
Probab=76.14 E-value=6.6 Score=19.84 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=37.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 99973998999999999998898999999979999999717999489970
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D 53 (133)
|||||--...-..+.+.++..|..+....+..-.++.+.. ..||.|++.
T Consensus 2 ILiiD~~dsft~~i~r~lrelg~~~~v~~~d~~~~~~i~~-~~p~gIILS 50 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDLLVCRNDEIDLSKIKN-LNPRHIIIS 50 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-CCCCEEEEC
T ss_conf 9999788808999999998689989998699899999970-797989997
No 126
>PRK13175 consensus
Probab=75.78 E-value=6.2 Score=19.97 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=33.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 977999739989999999999988989999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~e 36 (133)
|++|.|+|=-.-+...+.+.|+..|+++....+..+
T Consensus 1 M~kI~IiD~g~gn~~si~~al~~lg~~~~i~~~~~~ 36 (206)
T PRK13175 1 MPKIAVIDYGMGNLHSVCKALERLGAEPILTSDPAD 36 (206)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 987999979976899999999987998999799899
No 127
>TIGR02130 dapB_plant dihydrodipicolinate reductase; InterPro: IPR011859 This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome..
Probab=75.44 E-value=4.8 Score=20.63 Aligned_cols=62 Identities=15% Similarity=0.061 Sum_probs=40.6
Q ss_pred HHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 9999717999489970789987-738999961434889739999638998999999976998899769
Q gi|254780892|r 38 REFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP 104 (133)
Q Consensus 38 l~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP 104 (133)
+.-.. +.+|++|++|+..|.. .+= .++ -....+|+||=|+-+|.+...+..+-.-.-=+.-|
T Consensus 61 ~~~Vl-~KYP~lI~~DYT~P~AVNDN-A~l---Y~K~~~PFVMGTTGGDR~~L~K~V~~~~~~~VI~P 123 (275)
T TIGR02130 61 LSEVL-EKYPELIVVDYTIPSAVNDN-AEL---YVKVKVPFVMGTTGGDREALAKLVEDAKIYAVIAP 123 (275)
T ss_pred HHHHH-HHCCCEEEECCCCCCCCCCC-HHH---HCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 99998-63887599804788731220-352---00235764653787418999999875077614367
No 128
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=75.31 E-value=6.9 Score=19.70 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC-----HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH-HCCCCEEEE
Q ss_conf 99999997179994899707899877-----389999614348897399996389989999999-769988997
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGVL-----EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA-RAGANSFLL 102 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~~-----~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~-~~Ga~~yl~ 102 (133)
.+.++.+.+...-.++++|+.--|+. ++.+.+++ ...+|+|.--|-+..++..+++ ..|+++...
T Consensus 155 ~~~~~~~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~---~~~ipiIasGGi~s~~di~~l~~~~~v~gv~~ 225 (253)
T PRK01033 155 VEFAKQAEELGAGEIVLNSIDRDGVMKGYDLELIKKISS---AVKIPVTALGGAGSLDDIADLIQEAGASAAAA 225 (253)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 999999874697799998784889766879999999998---78999999789899999999998679739978
No 129
>PRK13138 consensus
Probab=75.28 E-value=6.9 Score=19.70 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCC------CHHHHHHHHHCCCCEEEEC--CCC
Q ss_conf 389999614348897399996389------9899999997699889976--989
Q gi|254780892|r 61 EFIAHVRQMPLGTDVFVYYLLMEV------DFEKMIAGARAGANSFLLK--PFN 106 (133)
Q Consensus 61 ~l~~~ir~~~~~~~~pii~lT~~~------~~~~~~~a~~~Ga~~yl~K--P~~ 106 (133)
++++++|. ...++|+++||-++ -..-..+|.++|+++.|.- |+.
T Consensus 79 ~~~~~ir~--~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e 130 (264)
T PRK13138 79 EITAEIHK--LHPEIPLVYLTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLPFD 130 (264)
T ss_pred HHHHHHCC--CCCCCCEEEEEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 46776033--58988889752123898848999999998769775853689865
No 130
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=75.13 E-value=7 Score=19.68 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=35.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCCEEEECCCC
Q ss_conf 97799973998999999999998898999999979------999999717999489970789
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC------EAREFCEKELLPNYLVIDESM 56 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~------eAl~~~~~~~~pdlii~D~~m 56 (133)
|+ |||.=++=.....|++.|. -+++|.....+. +.+..+.++..||+||----+
T Consensus 1 M~-iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MK-ILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CC-EEEECCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCC
T ss_conf 95-8997698767999999717-784399515765555685899999986199989987320
No 131
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=75.05 E-value=7 Score=19.66 Aligned_cols=100 Identities=15% Similarity=0.030 Sum_probs=66.2
Q ss_pred HHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCCEEEECCCCCCC--CH-----HHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 99999988989999999--79999999717999489970789987--73-----89999614348897399996389989
Q gi|254780892|r 17 GRHLFNDFGFMVFEATS--VCEAREFCEKELLPNYLVIDESMEGV--LE-----FIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 17 l~~~L~~~g~~v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~~--~~-----l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
..+.|-..||.|.-..+ ..-|-+ ++.-. -..+|=|--|=| .| .++.|+. ..++|+|+=-|-+.+.
T Consensus 115 Aae~Lv~~GF~VlpY~~~D~v~akr-Le~~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e---~~~vPvIVDAGiG~pS 188 (248)
T cd04728 115 AAEILVKEGFTVLPYCTDDPVLAKR-LEDAG--CAAVMPLGSPIGSGQGLLNPYNLRIIIE---RADVPVIVDAGIGTPS 188 (248)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHH-HHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHH
T ss_conf 9999998899897867889999999-99749--5345204564347988799999999998---4799889847999756
Q ss_pred HHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999769988997-----69898999999999999999
Q gi|254780892|r 88 KMIAGARAGANSFLL-----KPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl~-----KP~~~~~L~~~i~~~~~~~~ 122 (133)
+..+||+.|++..|. +--++-.+..+++...+--+
T Consensus 189 ~Aa~aMElG~daVL~NTAIA~A~dPv~MA~A~~~AV~AGR 228 (248)
T cd04728 189 DAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 7899987265533454687716998999999999999999
No 132
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.77 E-value=7.1 Score=19.62 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=43.7
Q ss_pred CCEEEEEC--CCHHHH---HHHHHHHHHCCCEEEEECCHHHHHHH--H--HHCCCCCEEEECCCCCCCCHH-HHHHHHCC
Q ss_conf 97799973--998999---99999999889899999997999999--9--717999489970789987738-99996143
Q gi|254780892|r 1 MDSLLLVD--SSHIVR---KVGRHLFNDFGFMVFEATSVCEAREF--C--EKELLPNYLVIDESMEGVLEF-IAHVRQMP 70 (133)
Q Consensus 1 m~~ILiVD--D~~~~r---~~l~~~L~~~g~~v~~a~~g~eAl~~--~--~~~~~pdlii~D~~mP~~~~l-~~~ir~~~ 70 (133)
|+||+||= +++... .-+.+.|...|++|....++.++... . .....+|+|++ =||+|. ++..|..
T Consensus 3 lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----lGGDGT~L~aar~~- 77 (304)
T PRK02645 3 LKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIV----LGGDGTVLAAARHL- 77 (304)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEE----ECCCHHHHHHHHHH-
T ss_conf 4599999858999999999999999998889999844434447776200144668889999----78688999999985-
Q ss_pred CCCCCEEEEEE
Q ss_conf 48897399996
Q gi|254780892|r 71 LGTDVFVYYLL 81 (133)
Q Consensus 71 ~~~~~pii~lT 81 (133)
...++||+-+.
T Consensus 78 ~~~~iPilGiN 88 (304)
T PRK02645 78 APHDIPILSFN 88 (304)
T ss_pred CCCCCCEEEEE
T ss_conf 42699889982
No 133
>PRK02621 consensus
Probab=74.51 E-value=7.2 Score=19.58 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=49.9
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC-CCEE------EEC
Q ss_conf 999999717999489970789987-----7389999614348897399996389989999999769-9889------976
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSF------LLK 103 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G-a~~y------l~K 103 (133)
+.++.+.....-.++++|+.--|+ .++++.+. ....+|+++-.|-+..++..+++..| +.+. -.+
T Consensus 158 ~~~~~~~~~g~geil~tdI~~DGt~~G~d~~l~~~i~---~~~~iPvi~sGGi~s~edi~~~l~~~~v~gvivG~al~~~ 234 (254)
T PRK02621 158 EWAEEVAERGAGEILLTSMDGDGTQAGYDLELTRAIA---EAVEIPVIASGGAGCCDHIAEALTEGKAEAALLASLLHYG 234 (254)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCC
T ss_conf 9998877628896999888047975768869999999---7179979997799999999999985898198775787889
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9898999999999
Q gi|254780892|r 104 PFNRETLRFAMRE 116 (133)
Q Consensus 104 P~~~~~L~~~i~~ 116 (133)
-++..++...+.+
T Consensus 235 ~~~l~e~K~~l~~ 247 (254)
T PRK02621 235 QLTIAEIKADLLA 247 (254)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9999999999997
No 134
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.36 E-value=7.3 Score=19.56 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=13.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 9739999638998999999976998899
Q gi|254780892|r 74 DVFVYYLLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 74 ~~pii~lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
++|+++--+-.+.++..+..+.|+++.+
T Consensus 190 ~~p~i~~GGv~s~~di~~l~~~g~~gvi 217 (234)
T cd04732 190 GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 9989998189999999999977998999
No 135
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=74.14 E-value=7.4 Score=19.53 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=64.5
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 779997-3998---9999999999988989999-------9997999999971799948997078998773899996143
Q gi|254780892|r 2 DSLLLV-DSSH---IVRKVGRHLFNDFGFMVFE-------ATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 2 ~~ILiV-DD~~---~~r~~l~~~L~~~g~~v~~-------a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
+||.++ +|+. .....++..++..|+++.. ..+-...+..+.+ ..||.|++-...++...+++++++..
T Consensus 136 ~~vaiv~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~i~~l~~-~~pd~v~~~~~~~~~~~~~~~~~~~g 214 (298)
T cd06268 136 KKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKA-AGPDAVFLAGYGGDAALFLKQAREAG 214 (298)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 58999778734679999999998997499899999648765777999999997-69999999176267899999999829
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 48897399996389989999999769988997698
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF 105 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~ 105 (133)
. +.+++..++.........+-.+...-|..-|+
T Consensus 215 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 247 (298)
T cd06268 215 L--KVPIVGGDGAAAPALLELAGDAAEGVLGTTPY 247 (298)
T ss_pred C--CCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf 9--97399956777789999788975887999856
No 136
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=74.11 E-value=6.7 Score=19.80 Aligned_cols=49 Identities=24% Similarity=0.157 Sum_probs=36.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 99973998999999999998898999999979999999717999489970
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D 53 (133)
||+||--...-..+.+.|+..|..|....+.+--++.+.. ..|+.|++.
T Consensus 2 iLiiDn~DsfT~ni~~~l~~lg~~v~vv~~d~~~~~~i~~-~~p~~IilS 50 (192)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAEVKVVRNDEIDIAGIEA-LNPSHLVIS 50 (192)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-CCCCEEEEC
T ss_conf 9999799977999999998779928999699899999984-297959998
No 137
>PRK13137 consensus
Probab=73.48 E-value=5.4 Score=20.33 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=30.5
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 73899996143488973999963899------899999997699889976989899
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
+++++++|. ..++|+|+||-++. ..-..++.++|+++.|.--+..++
T Consensus 89 l~~~~~~r~---~~~~PivlM~Y~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE 141 (266)
T PRK13137 89 LELVRELRA---LTDTPLVIMTYLNPIYAVGPEEFMRLFQEAGVDGLILPDLPPDQ 141 (266)
T ss_pred HHHHHHHCC---CCCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 999997555---68987899934589987589999999997696099947999788
No 138
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=73.33 E-value=7.7 Score=19.41 Aligned_cols=65 Identities=20% Similarity=0.091 Sum_probs=43.7
Q ss_pred HHHHHHHCCCCCEEEECCCCC-CC---------------CHHHHHHHHCCCCCCCEEEEEECCCCHHH----HHHHHHCC
Q ss_conf 999997179994899707899-87---------------73899996143488973999963899899----99999769
Q gi|254780892|r 37 AREFCEKELLPNYLVIDESME-GV---------------LEFIAHVRQMPLGTDVFVYYLLMEVDFEK----MIAGARAG 96 (133)
Q Consensus 37 Al~~~~~~~~pdlii~D~~mP-~~---------------~~l~~~ir~~~~~~~~pii~lT~~~~~~~----~~~a~~~G 96 (133)
+.+.+.. ..+.+=++-+.+| +| .+..+..+......++|.|+||+--+.+. ..-|+++|
T Consensus 191 a~kefs~-~~ygvDvlKvE~Pvn~~~veg~~~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aG 269 (340)
T PRK12858 191 TMKEFSK-PRYGVDVLKVEVPVDMKFVEGRDGFAAAYTQEEAFKLFREQSDATPLPFIFLSAGVTPELFLRELEFAKQAG 269 (340)
T ss_pred HHHHHCC-CCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 9998637-666986799626666120224567532135999999999997354999799818999899999999999859
Q ss_pred C--CEEEE
Q ss_conf 9--88997
Q gi|254780892|r 97 A--NSFLL 102 (133)
Q Consensus 97 a--~~yl~ 102 (133)
| .+||.
T Consensus 270 a~fsG~L~ 277 (340)
T PRK12858 270 ADFNGVLC 277 (340)
T ss_pred CCCCCEEE
T ss_conf 97235534
No 139
>PRK00758 GMP synthase subunit A; Validated
Probab=73.08 E-value=7.9 Score=19.37 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=45.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HH-HHHHHHCCCCCCCEEEE
Q ss_conf 7999739989999999999988989999999799999997179994899707899877--38-99996143488973999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EF-IAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l-~~~ir~~~~~~~~pii~ 79 (133)
|||++|--..+-..+.+.|+..|+.|....+...+ +.+.. .||-|++.-- |+.. +. ...++ ..++||+-
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~-~~i~~--~~dgiilS~G-P~~~~~~~~~~~i~----~~~iPiLG 72 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPL-EEIKA--EPDGIILSGG-PEIERAGNCEEYLL----ELDVPILG 72 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHH--CCCEEEECCC-CCCCCCCCHHHHHH----HCCCCEEE
T ss_conf 99999898638999999999789928999598989-99963--8998998899-98333220699998----65998899
Q ss_pred E
Q ss_conf 9
Q gi|254780892|r 80 L 80 (133)
Q Consensus 80 l 80 (133)
+
T Consensus 73 I 73 (184)
T PRK00758 73 I 73 (184)
T ss_pred E
T ss_conf 7
No 140
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=73.07 E-value=7.9 Score=19.37 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=37.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 9779997399899999999999889899999997999999971799948997078998
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~ 58 (133)
|++|.|+|=-.-+-+.+.+.|+..|+.+....+.++ +. . +|.+++ ||
T Consensus 1 Mk~I~Iid~G~~n~~si~~~l~~lg~~~~i~~~~~~----l~--~-~d~iIL----PG 47 (201)
T PRK13143 1 MKMIVIIDYGLGNLRSVSKGLERAGADVEITSDPEE----IL--S-ADGIVL----PG 47 (201)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHH----HH--H-CCEEEE----CC
T ss_conf 988999988971999999999986985999289999----84--3-796797----38
No 141
>PRK05693 short chain dehydrogenase; Provisional
Probab=72.89 E-value=7.9 Score=19.34 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=55.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEE
Q ss_conf 97799973998999999999998898999999979999999717999489970789987-73899996143488973999
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~ 79 (133)
||.+||.=-+.=+-..+...|...|++|....-..+.++.+..... ..+-+|+.=++- ..+..++... ...+-+++
T Consensus 1 MKvvlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~-~~~~~Dvtd~~~i~~~~~~~~~~--~g~iDiLV 77 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGF-TAVQLDVNDGAALARLAEELEAE--HQGLDVLI 77 (274)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHH--CCCCCEEE
T ss_conf 9989994888589999999999879999999799999999984899-18998469989999999999997--29976899
Q ss_pred EEC
Q ss_conf 963
Q gi|254780892|r 80 LLM 82 (133)
Q Consensus 80 lT~ 82 (133)
-.+
T Consensus 78 NNA 80 (274)
T PRK05693 78 NNA 80 (274)
T ss_pred ECC
T ss_conf 888
No 142
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.81 E-value=8 Score=19.33 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=56.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 79997399899999999999889899999997-9999999717999489970789987-738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g-~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~l 80 (133)
...++|.|+..-+. +++.|+.|+.-+-. .+-++.+--+. -.++++-+.=|.. ....+.+|++ +|++||+.-
T Consensus 424 ~~vviD~d~~~V~~----~r~~G~~v~yGDat~~~vL~~AGi~~-Ar~vViaidd~~~~~~iv~~~r~~--~P~l~IiaR 496 (615)
T PRK03562 424 KMVVLDHDPDHIET----LRKFGMKVFYGDATRMDLLESAGAAK-AEVLINAIDDPQTNLQLTELVKEH--FPHLQIIAR 496 (615)
T ss_pred CEEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCCCC-CCEEEEEECCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 87999799999999----99679908976899999998679140-688999949899999999999975--899869998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 63899899999997699889976989
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
+- +..+..+-.++||++++.--|.
T Consensus 497 ar--d~~~~~~L~~~Ga~~vv~Et~e 520 (615)
T PRK03562 497 AR--DVDHYIRLRQAGVEKPERETFE 520 (615)
T ss_pred EC--CHHHHHHHHHCCCCEEECCHHH
T ss_conf 39--7788999997899989666589
No 143
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=71.85 E-value=5.7 Score=20.21 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 998773899996143488973999963899899999997699889976989899999999
Q gi|254780892|r 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 (133)
Q Consensus 56 mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~ 115 (133)
=|+.-+.++++|+ ..+.++|+||.+...-..-|-+.|.++|+.. .+|+.=...++
T Consensus 452 Rp~a~eaI~~Lr~----~GI~vvMITGDn~~TA~aIA~elGIDd~~A~-~tPedKl~iVk 506 (684)
T PRK01122 452 KPGIKERFAQLRK----MGIKTVMITGDNPLTAAAIAAEAGVDDFLAE-ATPEDKLALIR 506 (684)
T ss_pred CHHHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHCCHHHHHC-CCHHHHHHHHH
T ss_conf 7549999999998----7992999989896999999998495655657-99999999999
No 144
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=71.59 E-value=8.5 Score=19.16 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=33.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 99973998999999999998898999999979999999717999489970
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D 53 (133)
|||||--...-+.+.+.+++.|+.|..........+.+.. ..||.|++.
T Consensus 1 iLiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~-~~~~giiLS 49 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL-LNPDAIVIS 49 (184)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-CCCCEEEEC
T ss_conf 8999379817999999998679959999899999999973-297999999
No 145
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=71.49 E-value=8.6 Score=19.15 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=12.2
Q ss_pred EECCHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 999979999999717999489970789
Q gi|254780892|r 30 EATSVCEAREFCEKELLPNYLVIDESM 56 (133)
Q Consensus 30 ~a~~g~eAl~~~~~~~~pdlii~D~~m 56 (133)
.|.+|.=++|.+.++.. .++++|.+-
T Consensus 51 FaGSGslglEAlSRGA~-~v~fvE~~~ 76 (181)
T pfam03602 51 FAGSGALGLEALSRGAS-SVVFVEKDK 76 (181)
T ss_pred CCCCCHHHHHHHHCCCC-EEEEEECCH
T ss_conf 78726989999976998-899996999
No 146
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=71.44 E-value=8.6 Score=19.14 Aligned_cols=89 Identities=15% Similarity=-0.059 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHC-CCEEEEEC--CHHHHHHHHHHCCCCCEEEECCCCCCC------CHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 999999999988-98999999--979999999717999489970789987------738999961434889739999638
Q gi|254780892|r 13 VRKVGRHLFNDF-GFMVFEAT--SVCEAREFCEKELLPNYLVIDESMEGV------LEFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 13 ~r~~l~~~L~~~-g~~v~~a~--~g~eAl~~~~~~~~pdlii~D~~mP~~------~~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
..+.++...+.. +..+.... +.......+.+... |.|.++....++ ......+........+||+.-.+-
T Consensus 101 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvi~~gGi 179 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGV-DEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGI 179 (200)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 6899999998448964999689999999999998099-799970874678887666116899999998579998997587
Q ss_pred CCHHHHHHHHHCCCCEEEE
Q ss_conf 9989999999769988997
Q gi|254780892|r 84 VDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 84 ~~~~~~~~a~~~Ga~~yl~ 102 (133)
++.+...+++..||+.++.
T Consensus 180 ~~~~~~~~~~~~gAdgv~v 198 (200)
T cd04722 180 NDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCHHHHHHHHHCCCCEEEE
T ss_conf 9999999999859988981
No 147
>PRK13119 consensus
Probab=71.13 E-value=8.7 Score=19.10 Aligned_cols=48 Identities=23% Similarity=0.156 Sum_probs=30.1
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 73899996143488973999963899------899999997699889976989899
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
+++++++|+ ...++|+++||-++. ..-..+|.++|+++.|.--+..++
T Consensus 80 ~~~~~~ir~--~~~~~pivlMtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~ee 133 (261)
T PRK13119 80 LDVVRKFRE--TDTQTPVVLMGYLNPVHKMGYREFAQEAAKAGVDGVLTVDSPVET 133 (261)
T ss_pred HHHHHHHHC--CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 999998651--489989899840378988629999999997598579836899788
No 148
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=70.34 E-value=9.1 Score=19.00 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHH
Q ss_conf 9987738999961434889739999638998999999976998899-----------769898999999999
Q gi|254780892|r 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-----------LKPFNRETLRFAMRE 116 (133)
Q Consensus 56 mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-----------~KP~~~~~L~~~i~~ 116 (133)
+||..++++.+++. ++++.++|+..........-..|..+|+ .|| +++.+..++++
T Consensus 95 ~pg~~e~L~~L~~~----g~~l~I~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~v~~~KP-~P~~~~~a~~~ 161 (228)
T PRK13222 95 YPGVKETLAALKAA----GYPLAVVTNKPEPFVAPLLEALGIADYFSVVIGGDSLPNKKP-DPAPLLLACEK 161 (228)
T ss_pred CCCHHHHHHHHHHC----CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CHHHHHHHHHH
T ss_conf 83599999999987----996477548749999999886276533234663222477787-86999999998
No 149
>PRK13120 consensus
Probab=70.30 E-value=9.1 Score=18.99 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=31.7
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 73899996143488973999963899------8999999976998899769898999
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFNRETL 110 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~~~~L 110 (133)
+++++++|. ....+|+++||-++- ..-..++.++|++++|.--+..++-
T Consensus 86 l~~v~~~r~--~~~~~PivlM~Y~Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~EE~ 140 (285)
T PRK13120 86 LELVADFRR--DDSVTPVVLMGYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEV 140 (285)
T ss_pred HHHHHHHHH--CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 999999873--4898888986105499998799999999983987796479997999
No 150
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=69.91 E-value=9.3 Score=18.94 Aligned_cols=66 Identities=20% Similarity=0.109 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 979999999717999489970789987-----7389999614348897399996389989999999769988997
Q gi|254780892|r 33 SVCEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 33 ~g~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
+..+.++.+.... -.++++|+.--|+ .++++.+++ ..++|+++--|-+..++..+....|+++.+.
T Consensus 147 ~~~~~~~~~~~~~-~eii~t~Id~dGt~~G~d~~l~~~i~~---~~~~pvi~sGGv~s~~di~~l~~~g~~gviv 217 (233)
T cd04723 147 GPEELLRRLAKWP-EELIVLDIDRVGSGQGPDLELLERLAA---RADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHHC-CEEEEEEECCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 8999999999658-959998643446567779999999998---6899899988999999999999789989998
No 151
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=69.82 E-value=8.1 Score=19.28 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=59.0
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEE-------CCHH-----------------------HHHHHHHHCCCCCEEEECCC
Q ss_conf 97399899999999999889899999-------9979-----------------------99999971799948997078
Q gi|254780892|r 6 LVDSSHIVRKVGRHLFNDFGFMVFEA-------TSVC-----------------------EAREFCEKELLPNYLVIDES 55 (133)
Q Consensus 6 iVDD~~~~r~~l~~~L~~~g~~v~~a-------~~g~-----------------------eAl~~~~~~~~pdlii~D~~ 55 (133)
+||..+.....+...|+..|+..... .+|. ++.+.+.+ .+.+-.-...-
T Consensus 24 LvDS~p~~~~a~~~~L~~lG~~~~~~e~vr~~iG~g~~~lv~r~L~~~~~~~~i~~~~~e~~~~~f~~-~y~~~~~~~~l 102 (272)
T PRK13223 24 LVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFME-AYAESHELTVV 102 (272)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCC
T ss_conf 65099999999999999888998999999999638899999998643245456679999999999999-99973655676
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 9987738999961434889739999638998999999976998899-----------7698989999999999
Q gi|254780892|r 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-----------LKPFNRETLRFAMREL 117 (133)
Q Consensus 56 mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-----------~KP~~~~~L~~~i~~~ 117 (133)
+||..++++.+++ .++|.-++|+........-.-..|..+|. .|| +++-+..+++++
T Consensus 103 yPGV~e~L~~L~~----~Gi~laIvTnk~~~~~~~iL~~lgL~~~Fd~VvggDdv~~~KP-dP~~ll~ale~l 170 (272)
T PRK13223 103 YPGVRDTLKWLRK----QGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKP-DPAALLFVMKMA 170 (272)
T ss_pred CCCHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 8479999999997----8997899639817899999987497241464534576999999-989999999995
No 152
>PRK01659 consensus
Probab=69.09 E-value=9.7 Score=18.84 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEE------
Q ss_conf 9999999717999489970789987-----7389999614348897399996389989999999769-988997------
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLL------ 102 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G-a~~yl~------ 102 (133)
.+.+..+.....-.++++|+.--|+ .++++.++. ...+|+|.-.|-+..++..+++..+ +++.+.
T Consensus 156 ~~~i~~~~~~g~geil~tdI~rDG~~~G~dl~l~~~i~~---~~~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~~ 232 (252)
T PRK01659 156 IAWAKEAVRLGAGEILLTSMDADGTKNGFDLRLTKAISE---AVSVPVIASGGAGNADHMVEVFQKTTADAALAASIFHY 232 (252)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---HCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 999999997699779999881458547689899999998---68999999917999999999997489826557547777
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 69898999999999
Q gi|254780892|r 103 KPFNRETLRFAMRE 116 (133)
Q Consensus 103 KP~~~~~L~~~i~~ 116 (133)
+-++..++...+++
T Consensus 233 ~~~sl~e~k~~L~~ 246 (252)
T PRK01659 233 GETSIKEVKAKLRE 246 (252)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 99999999999998
No 153
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=68.73 E-value=9.8 Score=18.79 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=42.4
Q ss_pred EEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 999999799999997179994899707899877-3899996143488973999963899899999997699889
Q gi|254780892|r 28 VFEATSVCEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF 100 (133)
Q Consensus 28 v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~y 100 (133)
..++.|-+|+.+.+.. . +|.|++|-.-|... +.++.++.. .+. .++-.||.-..+....-.+.|++-.
T Consensus 193 eVEv~tl~~~~ea~~~-g-aD~IlLDnmsp~~l~~av~~~~~~--~~~-~~lEaSGGI~~~ni~~yA~tGVD~i 261 (284)
T PRK06096 193 VVEADTPKEAIAALRA-Q-PDVLQLDKFSPQQATEIAQIAPSL--APH-CTLALTGGINLTTLKNYLDCGIRLF 261 (284)
T ss_pred EEEECCHHHHHHHHHC-C-CCEEEECCCCHHHHHHHHHHHHHH--CCC-EEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 9980999999999857-9-999996898999999999998721--797-7999989999999999998099999
No 154
>PRK13116 consensus
Probab=68.22 E-value=10 Score=18.73 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=12.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 897399996389989999999769988997
Q gi|254780892|r 73 TDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 73 ~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.++||.+==|-.+.++..+++..+|++.+.
T Consensus 205 t~~Pv~vGFGIs~~e~v~~~~~~~aDGVIV 234 (278)
T PRK13116 205 DGAPILLGFGISSPQHVADAIAAGASGAIT 234 (278)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 799879981679899999998668999998
No 155
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=68.07 E-value=10 Score=18.71 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=56.9
Q ss_pred CCEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 97799973998----9999999999988989999-------999799999997179994899707899877389999614
Q gi|254780892|r 1 MDSLLLVDSSH----IVRKVGRHLFNDFGFMVFE-------ATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQM 69 (133)
Q Consensus 1 m~~ILiVDD~~----~~r~~l~~~L~~~g~~v~~-------a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~ 69 (133)
.|++.++.+|. ......+..++..|.+|.. ..+-...+..+.+ ..||+|++-...++...+.+++++.
T Consensus 132 ~k~vavi~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~-~~pD~v~~~~~~~~~~~~~~q~~~~ 210 (333)
T cd06358 132 ARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAA-SGADAVLSTLVGQDAVAFNRQFAAA 210 (333)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 978999926834658899999999997498599998279999789999999997-4989999937772399999999976
Q ss_pred CCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 34889739999638998999999
Q gi|254780892|r 70 PLGTDVFVYYLLMEVDFEKMIAG 92 (133)
Q Consensus 70 ~~~~~~pii~lT~~~~~~~~~~a 92 (133)
.-..+++..++..+.......
T Consensus 211 --G~~~~~~~~~~~~~~~~~~~~ 231 (333)
T cd06358 211 --GLRDRILRLSPLMDENMLLAS 231 (333)
T ss_pred --CCCCCEEEEECCCCHHHHHHH
T ss_conf --999874666456787999863
No 156
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=67.69 E-value=10 Score=18.66 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=35.9
Q ss_pred CCCCCHH--HHHHHHCCCCCCCEEEEEECCCCHHHHHHHH---HCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9987738--9999614348897399996389989999999---769988997698989999999999999999
Q gi|254780892|r 56 MEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA---RAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 56 mP~~~~l--~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~---~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
||..+|= +.++.++ ...+|+|+ |.-+.-.+.+.-. ...+++|+..|.+.+.|..++++++...+.
T Consensus 376 ~PS~~EP~Gl~qleAm--~~GtppIa-~~tGGL~dtV~d~~~~~~~~tGf~f~~~~~~~l~~ai~~al~~~~~ 445 (476)
T cd03791 376 MPSRFEPCGLTQMYAM--RYGTVPIV-RATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRD 445 (476)
T ss_pred CCCCCCCCCHHHHHHH--HCCCCEEE-CCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 2554578548999998--66997598-0699986510036667777745886799999999999999998579
No 157
>pfam09936 DUF2168 Uncharacterized protein conserved in bacteria (DUF2168). This domain, found in various hypothetical prokaryotic proteins, has no known function. It is also found in a few prokaryotic tRNA (guanine-N(1)-)-methyltransferases.
Probab=67.36 E-value=10 Score=18.62 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=65.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC----C--C---------EEEEECCHHHHHHHHHH--CCCCCEEEECCC-CCCCCHHH
Q ss_conf 77999739989999999999988----9--8---------99999997999999971--799948997078-99877389
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDF----G--F---------MVFEATSVCEAREFCEK--ELLPNYLVIDES-MEGVLEFI 63 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~----g--~---------~v~~a~~g~eAl~~~~~--~~~pdlii~D~~-mP~~~~l~ 63 (133)
++-.||---+..+.++.+++..| | | .|..+.+-++|++.+++ +..|-+|-+|-. -|+...+
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~~NP~R~eAl~~v~~~~sle~ai~~i~~~~G~~p~vvaTsAr~~~~~is~- 121 (185)
T pfam09936 43 GRYYIVTPLEAQQALVERILAHWQEGYGGEYNPDRKEALSLVKVVSSLEEAIEDIEKRTGQRPLIVATSARKRPNTISY- 121 (185)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH-
T ss_conf 6679956019999999999987325978666967899985730060299999999996199977998047568997399-
Q ss_pred HHHHHC--CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 999614--3488973999963899899999997699889976989
Q gi|254780892|r 64 AHVRQM--PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 64 ~~ir~~--~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
..+|+. ......-++|=||.+-.++..+. .||+..|+.
T Consensus 122 ~~lr~~i~~~~~P~LllFGTGwGL~~e~~~~-----~D~iLePI~ 161 (185)
T pfam09936 122 EELRKMIQEREKPVLLLFGTGWGLAPEVLEQ-----ADYVLEPIR 161 (185)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-----CCEEECCCC
T ss_conf 9999998445881899965876877999974-----686670563
No 158
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=67.35 E-value=11 Score=18.62 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=33.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 977999739989999999999988989999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~e 36 (133)
|++|.|+|=..-|...+++.|+..|+++....+.++
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~ 36 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEE 36 (204)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 978999972863599999999975980698169889
No 159
>KOG1185 consensus
Probab=67.15 E-value=11 Score=18.60 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=54.7
Q ss_pred HHHHH--HHHHCCCCCEEEECCCCCCCC----HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 99999--997179994899707899877----389999614348897399996389989999999769988997698989
Q gi|254780892|r 35 CEARE--FCEKELLPNYLVIDESMEGVL----EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 (133)
Q Consensus 35 ~eAl~--~~~~~~~pdlii~D~~mP~~~----~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~ 108 (133)
-.|+| .+-+...| ++++=.+=.|.+ +-.++|+..+...+.|.-.++++..-+... ...|+.+|+.+ +.+
T Consensus 462 fSaME~ET~vR~~Lp-vv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~--ka~G~kG~~v~--t~~ 536 (571)
T KOG1185 462 FSAMELETFVRYKLP-VVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVA--KAFGGKGYFVS--TVE 536 (571)
T ss_pred CCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH--HHCCCCCEEEC--CHH
T ss_conf 105658888871687-6999962886346676448888516855689840124435699999--87188863647--899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780892|r 109 TLRFAMRELPQMQ 121 (133)
Q Consensus 109 ~L~~~i~~~~~~~ 121 (133)
+|..++++.++..
T Consensus 537 el~~~l~~a~q~~ 549 (571)
T KOG1185 537 ELLAALQQACQDT 549 (571)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998547
No 160
>PRK13114 consensus
Probab=66.96 E-value=11 Score=18.57 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=16.6
Q ss_pred CCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCC
Q ss_conf 88973999963899------899999997699889976989
Q gi|254780892|r 72 GTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 72 ~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
.+++|+++||-++. ..-..++.++|+++.|.--+.
T Consensus 88 ~~~~PivlM~Y~N~i~~~G~~~F~~~~~~aGvdG~IipDLP 128 (266)
T PRK13114 88 HPEVPLVLMGYANPMVRRGPDWFAAECKKAGVDGVICVDIP 128 (266)
T ss_pred CCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 89988799863019998649999999997499779845899
No 161
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=66.87 E-value=10 Score=18.67 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEE-EEC
Q ss_conf 99999997179994899707899877-3899996143488973999-963
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYY-LLM 82 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~-lT~ 82 (133)
+.+++..+++. .++++++++-|||. +-.+.+.+.-....+|++. ++.
T Consensus 19 ~r~l~~A~~~~-a~~vii~ldTPGG~~~a~~~I~~~i~~s~vPv~~yV~P 67 (172)
T cd07015 19 DRYITIAEQDN-AEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYP 67 (172)
T ss_pred HHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99999999779-98999998689628999999999998299998999947
No 162
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=66.84 E-value=5.2 Score=20.43 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHH
Q ss_conf 898999999999
Q gi|254780892|r 105 FNRETLRFAMRE 116 (133)
Q Consensus 105 ~~~~~L~~~i~~ 116 (133)
-+.+++..++++
T Consensus 164 hd~~~i~~al~~ 175 (195)
T cd02007 164 HNIEALIKVLKE 175 (195)
T ss_pred CCHHHHHHHHHH
T ss_conf 999999999999
No 163
>PRK13227 consensus
Probab=66.71 E-value=11 Score=18.54 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 9987738999961434889739999638998999999976998899-----------7698989999999999
Q gi|254780892|r 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-----------LKPFNRETLRFAMREL 117 (133)
Q Consensus 56 mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-----------~KP~~~~~L~~~i~~~ 117 (133)
+||..+++..+++. .+++-++|+..........-..|..+|+ .|| +++.+..++++.
T Consensus 98 ~pgv~~~L~~Lk~~----g~~~~ivTn~~~~~~~~~l~~~gl~~~Fd~iv~~ddv~~~KP-~P~~~~~~~~~l 165 (228)
T PRK13227 98 YPNVKETLEALKAQ----GYPLALVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKP-HPAPLLLVCEKL 165 (228)
T ss_pred CCCHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 82699999999987----996578845706766678886093554344300333577799-759999999981
No 164
>PRK13118 consensus
Probab=66.58 E-value=11 Score=18.53 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=21.0
Q ss_pred CCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 88973999963899------89999999769988997698989
Q gi|254780892|r 72 GTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFNRE 108 (133)
Q Consensus 72 ~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~~~ 108 (133)
..++|+++||-++. .+-..++.++|+++.|.--+..+
T Consensus 92 ~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~e 134 (269)
T PRK13118 92 DQTTPVVLMGYLNPIEIYGYERFVAQAKEAGVDGLILVDLPPE 134 (269)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 8999989974000787863999999999859974645899978
No 165
>PRK13229 consensus
Probab=65.90 E-value=11 Score=18.45 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 9987738999961434889739999638998999999976998899-----------7698989999999999
Q gi|254780892|r 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-----------LKPFNRETLRFAMREL 117 (133)
Q Consensus 56 mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-----------~KP~~~~~L~~~i~~~ 117 (133)
+||..+++..+++ ..+++-++|+..........-..|..+|+ .|| +++.+..++++.
T Consensus 96 ~pGv~e~L~~L~~----~G~~laI~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~~~~~KP-~P~~~~~al~~l 163 (234)
T PRK13229 96 YPGLLEAMDRFAS----AGYQLAVCTNKYEELSVKLLESLGLAARFAAICGGDTFSWRKP-DPRHLTETIARA 163 (234)
T ss_pred CCCHHHHHHHHHH----CCCCEEECCCCHHHHHHHHHHCCCCHHHHCEEEECCCCCCCCC-CHHHHHHHHHHH
T ss_conf 7479999999997----7997452169707888877521362123036761355778998-899999999981
No 166
>PRK02145 consensus
Probab=65.74 E-value=11 Score=18.43 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEEC------
Q ss_conf 999999717999489970789987-----7389999614348897399996389989999999769-9889976------
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLK------ 103 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G-a~~yl~K------ 103 (133)
+.++.+.....-.++++|+.--|+ +++++.++. ...+|+|.-.+-+..++..+++..| +.+.+.+
T Consensus 161 ~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~---~~~ipvIasGGi~s~~di~~~~~~~~~~av~~g~~~~~~ 237 (257)
T PRK02145 161 EWARKMAELGAGEILLTSMDRDGTKSGFDLALTRAVSD---AVPVPVIASGGVGSLQHLADGITEGHADAVLAASIFHYG 237 (257)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 76568876187868999984778778889799999986---269989998689999999999980898487653267779
Q ss_pred CCCHHHHHHHH
Q ss_conf 98989999999
Q gi|254780892|r 104 PFNRETLRFAM 114 (133)
Q Consensus 104 P~~~~~L~~~i 114 (133)
-++..++...+
T Consensus 238 ~~~i~e~k~~l 248 (257)
T PRK02145 238 EHTVGEAKRFM 248 (257)
T ss_pred CCCHHHHHHHH
T ss_conf 98999999999
No 167
>PRK04281 consensus
Probab=65.68 E-value=11 Score=18.42 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCC-----HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEEC------
Q ss_conf 9999997179994899707899877-----389999614348897399996389989999999769-9889976------
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESMEGVL-----EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLK------ 103 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP~~~-----~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G-a~~yl~K------ 103 (133)
+.+..+.....-.++++|+.--|+. ++++.++ ....+|+|...|-+..++..++++.| +++.+..
T Consensus 158 ~~~~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~---~~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~g~~~~~~ 234 (254)
T PRK04281 158 EWAVEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVA---EAVDIPVIASGGVGNVRHLIEGITEGKADAVLAAGIFHFG 234 (254)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 9999987529989999888578876876869999998---6169989997898999999999980898889764377779
Q ss_pred CCCHHHHHHHHH
Q ss_conf 989899999999
Q gi|254780892|r 104 PFNRETLRFAMR 115 (133)
Q Consensus 104 P~~~~~L~~~i~ 115 (133)
-++..++...++
T Consensus 235 ~~sl~eak~~l~ 246 (254)
T PRK04281 235 EIAIREAKRAMR 246 (254)
T ss_pred CCCHHHHHHHHH
T ss_conf 989999999999
No 168
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=65.19 E-value=12 Score=18.37 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 9899999999999889--8999999979999999717999489970789987--73899996143488973999963899
Q gi|254780892|r 10 SHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 10 ~~~~r~~l~~~L~~~g--~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
+......+++.|..-. +-+..........+.+.... +|-|++|..--.. -.+...++........|+|=+ ...+
T Consensus 3 ~~~~pN~lk~~L~~g~~~~G~~~~~~sp~~~Ei~a~~G-~Dfv~iD~EHg~~~~~~l~~~i~a~~~~~~~~lVRv-p~~~ 80 (256)
T PRK10558 3 NDVFPNKFKAALAAKQVQIGCWSALSNPITTEVLGLAG-FDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNE 80 (256)
T ss_pred CCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCC-CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEC-CCCC
T ss_conf 86578099999977997799885789989999997289-899998377899999999999999971799748967-8898
Q ss_pred HHHHHHHHHCCCCEEEECCCC-HHHHHHHHH
Q ss_conf 899999997699889976989-899999999
Q gi|254780892|r 86 FEKMIAGARAGANSFLLKPFN-RETLRFAMR 115 (133)
Q Consensus 86 ~~~~~~a~~~Ga~~yl~KP~~-~~~L~~~i~ 115 (133)
.....++++.||.+.+.--++ .++....++
T Consensus 81 ~~~i~r~LD~Ga~GvivP~V~s~eea~~~V~ 111 (256)
T PRK10558 81 PVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 8999999707987556147699999999998
No 169
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=64.95 E-value=12 Score=18.34 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCC-HH-HHHHHHCCCCCCCEEEEEECCCCHHHHHHHH-HCCCCEEEEC
Q ss_conf 9999997179994899707899877-38-9999614348897399996389989999999-7699889976
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESMEGVL-EF-IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA-RAGANSFLLK 103 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP~~~-~l-~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~-~~Ga~~yl~K 103 (133)
+.+..+.+...-.++++|+.--|+. |+ ...++......++|++..-|-+..++..+.+ ..|+++....
T Consensus 157 ~~i~~~~~~g~geii~tdI~~DG~~~G~d~~l~~~i~~~~~~piiasGGi~~~~di~~l~~~~~~~gv~~g 227 (232)
T TIGR03572 157 EWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 99999873599899998885768567689999999998689999998898999999999985898199972
No 170
>PRK13133 consensus
Probab=64.89 E-value=7.8 Score=19.39 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHCC--CCCCCEEEEEECCC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 8773899996143--48897399996389------9899999997699889976989899
Q gi|254780892|r 58 GVLEFIAHVRQMP--LGTDVFVYYLLMEV------DFEKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 58 ~~~~l~~~ir~~~--~~~~~pii~lT~~~------~~~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
+.+++++++|... +..++|+++||-++ -..-..+|.++|++++|.--+..++
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~PivlMtY~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE 137 (267)
T PRK13133 78 SLLELVRKARNGEGCRKITVPILLMGYCNPLIAYGGDCFLADAVKAGVDGLLIPDLPPEE 137 (267)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 999999999730243466877871564579998477999999998698788778999688
No 171
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=64.64 E-value=12 Score=18.30 Aligned_cols=102 Identities=17% Similarity=0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCCEEEECCCCCCC--CHH--HHHHHHCCCCCCCEEEEEECCCCHHHH
Q ss_conf 999999988989999999--79999999717999489970789987--738--999961434889739999638998999
Q gi|254780892|r 16 VGRHLFNDFGFMVFEATS--VCEAREFCEKELLPNYLVIDESMEGV--LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKM 89 (133)
Q Consensus 16 ~l~~~L~~~g~~v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~~--~~l--~~~ir~~~~~~~~pii~lT~~~~~~~~ 89 (133)
-..++|-..||.|.-..+ .--|-. ++.-. -..++-|--|=| .|+ -..++..-...++|||+=-+-+.+.+.
T Consensus 121 ~Aae~Lv~eGF~VlPY~~dD~v~arr-Lee~G--caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdA 197 (262)
T COG2022 121 KAAEQLVKEGFVVLPYTTDDPVLARR-LEEAG--CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDA 197 (262)
T ss_pred HHHHHHHHCCCEEEECCCCCHHHHHH-HHHCC--CEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 99999986798885036887899999-98649--6686335665667867578899999997389988986798976688
Q ss_pred HHHHHCCCCEEEEC-----CCCHHHHHHHHHHHHHH
Q ss_conf 99997699889976-----98989999999999999
Q gi|254780892|r 90 IAGARAGANSFLLK-----PFNRETLRFAMRELPQM 120 (133)
Q Consensus 90 ~~a~~~Ga~~yl~K-----P~~~~~L~~~i~~~~~~ 120 (133)
.++|+.|++..|.- --++-.+..++....+-
T Consensus 198 a~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~A 233 (262)
T COG2022 198 AQAMELGADAVLLNTAIARAKDPVAMARAFALAVEA 233 (262)
T ss_pred HHHHHHCCCEEEHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999860554323256766037869999999999997
No 172
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=64.61 E-value=10 Score=18.70 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=59.5
Q ss_pred CEEEEECCCHHHHHHHHHHHH-HCCCEEEEECCH--HHHHHHHHHCCCCCEEEECCC-C-CCCCHHHHHHHHCCCCCCCE
Q ss_conf 779997399899999999999-889899999997--999999971799948997078-9-98773899996143488973
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSV--CEAREFCEKELLPNYLVIDES-M-EGVLEFIAHVRQMPLGTDVF 76 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~-~~g~~v~~a~~g--~eAl~~~~~~~~pdlii~D~~-m-P~~~~l~~~ir~~~~~~~~p 76 (133)
+|+=|||.-..++-.++..-| +.|.++.--+.. .|++=++.+.-.||+|++|=- = -|+-.+++.+ +..+.
T Consensus 159 ~KVgivDERSEIAgC~~GvPQ~~vG~RtDVLD~CPKAEGmMM~iRSMSP~Viv~DEIGr~ED~~Al~eA~-----naGV~ 233 (282)
T TIGR02858 159 KKVGIVDERSEIAGCVNGVPQLDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-----NAGVS 233 (282)
T ss_pred CCEEEEECCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH-----CCCCE
T ss_conf 7469984324656545882414467606751788537899999970698579981488953389999986-----16756
Q ss_pred EEEEECCCC
Q ss_conf 999963899
Q gi|254780892|r 77 VYYLLMEVD 85 (133)
Q Consensus 77 ii~lT~~~~ 85 (133)
|| .|+|+.
T Consensus 234 ~I-~TaHg~ 241 (282)
T TIGR02858 234 VI-ATAHGR 241 (282)
T ss_pred EE-EEECCC
T ss_conf 88-764048
No 173
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=64.15 E-value=12 Score=18.25 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCEE---EEECCHHHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 9999999889899---99999799999997179994899707899877-3899996143488973999963899899999
Q gi|254780892|r 16 VGRHLFNDFGFMV---FEATSVCEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIA 91 (133)
Q Consensus 16 ~l~~~L~~~g~~v---~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~ 91 (133)
.+++.=...++.. .++.|-+|+.+.+..+ ||+|.+|..-|... +..+.+ ....-.++=.||.-..+....
T Consensus 177 Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag--aDiImLDNm~~e~~~~av~~l----~~~~~~~lEaSGgIt~~ni~~ 250 (280)
T COG0157 177 AVRRARAAAPFTKKIEVEVESLEEAEEALEAG--ADIIMLDNMSPEELKEAVKLL----GLAGRALLEASGGITLENIRE 250 (280)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC--CCEEEECCCCHHHHHHHHHHH----CCCCCEEEEEECCCCHHHHHH
T ss_conf 99999975899862899749999999999749--999997699999999999974----447766999758978778999
Q ss_pred HHHCCCCEE
Q ss_conf 997699889
Q gi|254780892|r 92 GARAGANSF 100 (133)
Q Consensus 92 a~~~Ga~~y 100 (133)
....|++-+
T Consensus 251 yA~tGVD~I 259 (280)
T COG0157 251 YAETGVDVI 259 (280)
T ss_pred HHHCCCCEE
T ss_conf 862699799
No 174
>PRK10128 putative aldolase; Provisional
Probab=64.14 E-value=12 Score=18.25 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHCCCCCEEEECCCCC--CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCC-HH
Q ss_conf 99799999997179994899707899--8773899996143488973999963899899999997699889976989-89
Q gi|254780892|r 32 TSVCEAREFCEKELLPNYLVIDESME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN-RE 108 (133)
Q Consensus 32 ~~g~eAl~~~~~~~~pdlii~D~~mP--~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~-~~ 108 (133)
.......+.+.... +|-|++|+.-- +..++...++........|++=+.. .+.....++++.||.+.+.--++ .+
T Consensus 9 ~~sp~~aEi~a~~G-~D~v~iD~EHg~~~~~~~~~~~~a~~~~~~~piVRv~~-~~~~~i~r~LD~Ga~GiivP~V~tae 86 (250)
T PRK10128 9 STTSYMAEIAATSG-YDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVE-GSKALIKQVLDIGAQTLLIPMVDTAE 86 (250)
T ss_pred CCCHHHHHHHHCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 89979999998089-89999817789999999999999998659971998589-99889999983789877854748699
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780892|r 109 TLRFAMRE 116 (133)
Q Consensus 109 ~L~~~i~~ 116 (133)
+....++.
T Consensus 87 ~A~~~V~~ 94 (250)
T PRK10128 87 QARQVVSA 94 (250)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 175
>PRK13112 consensus
Probab=63.91 E-value=12 Score=18.22 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=18.9
Q ss_pred CCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 88973999963899------89999999769988997698989
Q gi|254780892|r 72 GTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFNRE 108 (133)
Q Consensus 72 ~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~~~ 108 (133)
...+|+++||-++. ..-..+|.++|+++.|.--+..+
T Consensus 93 ~~~~PivlM~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~e 135 (279)
T PRK13112 93 DDTTPIVLMGYYNPIYIYGVERFLTDAKAAGVDGLIVVDLPPE 135 (279)
T ss_pred CCCCCEEEEEECHHHHHHCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 8998879985124998847999999999739987984699978
No 176
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=63.56 E-value=12 Score=18.18 Aligned_cols=82 Identities=23% Similarity=0.184 Sum_probs=54.6
Q ss_pred HHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC---------CHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 9999998898999-999979999999717999489970789987---------738999961434889739999638998
Q gi|254780892|r 17 GRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV---------LEFIAHVRQMPLGTDVFVYYLLMEVDF 86 (133)
Q Consensus 17 l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~---------~~l~~~ir~~~~~~~~pii~lT~~~~~ 86 (133)
+-..++..|..+. .+.+.++|......+ +|.|+.-=.=.|| ..++.+++.. .++||+.=-+-.+.
T Consensus 94 ~v~~l~~~g~~v~~~v~s~~~A~~a~~~G--aD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~---~~ipviaAGGI~~g 168 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAAG--ADALVAQGAEAGGHRGTFDIGTFALVPEVRDA---VDIPVIAAGGIADG 168 (236)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH---HCCCEEEECCCCCH
T ss_conf 99999982998999589899999999818--99899977777778898755567799999998---29868965462778
Q ss_pred HHHHHHHHCCCCEEEEC
Q ss_conf 99999997699889976
Q gi|254780892|r 87 EKMIAGARAGANSFLLK 103 (133)
Q Consensus 87 ~~~~~a~~~Ga~~yl~K 103 (133)
+....++..||+....=
T Consensus 169 ~~i~aal~lGA~gV~~G 185 (236)
T cd04730 169 RGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHHHHHHCCCEEEEC
T ss_conf 99999998089799955
No 177
>PTZ00089 transketolase; Provisional
Probab=63.14 E-value=13 Score=18.13 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=37.2
Q ss_pred EEEEECCCH---------HHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHHC-CCCCEEEECCCC
Q ss_conf 799973998---------999999999998898999999979-------999999717-999489970789
Q gi|254780892|r 3 SLLLVDSSH---------IVRKVGRHLFNDFGFMVFEATSVC-------EAREFCEKE-LLPNYLVIDESM 56 (133)
Q Consensus 3 ~ILiVDD~~---------~~r~~l~~~L~~~g~~v~~a~~g~-------eAl~~~~~~-~~pdlii~D~~m 56 (133)
=|+++|||. ..-.-+...++.+||+|.++.+|. +|++...+. ..|-+|++.-.+
T Consensus 180 Li~i~D~N~i~idg~~~~~~~~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak~~~~kPtlI~~~T~i 250 (670)
T PTZ00089 180 LILLYDDNKITIDGNTDLSFTEDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAKKNLKQPSLIIVQTAC 250 (670)
T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 89999177211468854365665999999807713433667779999999999998558998489964222
No 178
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=62.91 E-value=13 Score=18.11 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=18.1
Q ss_pred CCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 88973999963899------899999997699889976989899
Q gi|254780892|r 72 GTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 72 ~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
.+++|+++||-++. ..-..++.++|+++.|.--+..++
T Consensus 84 ~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE 127 (258)
T pfam00290 84 GTSVPIVLMTYYNPVLNYGIERFYAQAAEAGVDGLIIPDLPPEE 127 (258)
T ss_pred CCCCCEEEEEECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 89988899852088987299999999997599778707999889
No 179
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.69 E-value=13 Score=18.09 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 99999997179994899707899877-38999961434889739999638998999999976998899
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
.++++.+... .-.+|++|+.--|+. |+ ..++.. .++.|++.--+-.+.++..+..+.|+++.+
T Consensus 146 ~~~~~~~~~~-~~~ii~tdI~~dGt~~G~-~~~~~~--~~~~~iiasGGv~s~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 146 EDAYKMLRNY-VNRFIYTSIERDGTLTGI-ENIERF--WGDEEFIYAGGVSSIEDVKKLAEIGFSGAI 209 (228)
T ss_pred HHHHHHHHHH-CCCEEEEEECCCCCCCCH-HHHHHH--CCCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999863-845376312654300388-999986--168968987898999999999967998999
No 180
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=61.96 E-value=13 Score=18.01 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCCCEEEECCCCC-CC-----C----------HHHHHHHHCCCCCCCEEEEEECCCCHHH----HHHHHHC
Q ss_conf 9999997179994899707899-87-----7----------3899996143488973999963899899----9999976
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESME-GV-----L----------EFIAHVRQMPLGTDVFVYYLLMEVDFEK----MIAGARA 95 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP-~~-----~----------~l~~~ir~~~~~~~~pii~lT~~~~~~~----~~~a~~~ 95 (133)
++++.+.+.. +.+=++-+..| ++ + +.....+......++|.|+||+-.+.+. ..-|+++
T Consensus 187 ~~~kefs~~~-ygvDvlKvE~Pvn~~~veg~~~ge~~yt~~ea~~~fke~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~a 265 (324)
T PRK12399 187 EAMKVFSKPR-FNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAATDLPYIYLSAGVSAELFQETLVFAHEA 265 (324)
T ss_pred HHHHHHHCCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 9999970335-698769861576601013556675211299999999998744599979980899989999999999985
Q ss_pred CC--CEEEE
Q ss_conf 99--88997
Q gi|254780892|r 96 GA--NSFLL 102 (133)
Q Consensus 96 Ga--~~yl~ 102 (133)
|| .+||.
T Consensus 266 Ga~fsG~L~ 274 (324)
T PRK12399 266 GAKFNGVLC 274 (324)
T ss_pred CCCCCCEEE
T ss_conf 997335534
No 181
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=61.73 E-value=13 Score=17.98 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH-CCCCEEEE------
Q ss_conf 9999999717999489970789987-----73899996143488973999963899899999997-69988997------
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR-AGANSFLL------ 102 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~-~Ga~~yl~------ 102 (133)
.+.++.+.....-.++++|+.--|+ .++++.++. ...+|+|+.-|-+..++..+++. .|+++.+.
T Consensus 156 ~~~i~~~~~~g~geil~tdI~rDG~~~G~d~~l~~~i~~---~~~iPiI~sGGv~s~~di~~~l~~~~i~gv~~G~~~~~ 232 (253)
T PRK02083 156 VEWAKEVQELGAGEILLTSMDQDGTKNGYDLELTRAVRD---AVSVPVIASGGAGNLEHFAEAFTEGGADAALAASVFHF 232 (253)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHC
T ss_conf 999999875698789999885558667889999999997---57999999889999999999998679809987127776
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 6989899999999
Q gi|254780892|r 103 KPFNRETLRFAMR 115 (133)
Q Consensus 103 KP~~~~~L~~~i~ 115 (133)
+-++..++...+.
T Consensus 233 ~~~sl~~~k~~L~ 245 (253)
T PRK02083 233 GEITIGELKAYLA 245 (253)
T ss_pred CCCCHHHHHHHHH
T ss_conf 9999999999999
No 182
>PRK13224 consensus
Probab=61.55 E-value=14 Score=17.96 Aligned_cols=55 Identities=18% Similarity=0.092 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHH
Q ss_conf 9987738999961434889739999638998999999976998899-----------76989899999999
Q gi|254780892|r 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-----------LKPFNRETLRFAMR 115 (133)
Q Consensus 56 mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-----------~KP~~~~~L~~~i~ 115 (133)
+||..++++.+++. ++|+-++|+..........-..|..+|. .|| +++-+..+++
T Consensus 88 ~pG~~e~L~~L~~~----g~~laivTn~~~~~~~~~L~~~gl~~~Fd~iv~~d~v~~~KP-~Pe~~l~a~~ 153 (216)
T PRK13224 88 YPGVEAALRHLKAE----GWRLGLCTNKPVGPTRAILAHFGLAELFDVVIGGDSLPQRKP-DPAPLRAAFA 153 (216)
T ss_pred CCCHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHCCCHHHCCEEECCCCCCCCCC-CHHHHHHHHH
T ss_conf 83799999999977----996687608934778889987394432474654466899999-9999999997
No 183
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=61.53 E-value=14 Score=17.96 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9489970-789987---738999961434889739999638998999999976998899769898999999999999999
Q gi|254780892|r 47 PNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 47 pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+.++|+| .+|=.. ..+++.+. ....++.+|+.|. +.+..-.-...-...|-.||++.+.+..+++.+.+...
T Consensus 122 yKVyIIDEvhmLs~~AfNALLKtLE--EPP~~v~FILaTT--e~~KIp~TIlSRCQrf~F~~i~~~~I~~~L~~I~~~E~ 197 (462)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLE--EPPQHVKFFLATT--EIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAQQDG 197 (462)
T ss_pred EEEEEEECHHHCCHHHHHHHHHHHH--CCCCCEEEEEEEC--CHHHCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 0599981521179999999999861--8987749999818--81428547876540233257999999999999999839
Q ss_pred H
Q ss_conf 9
Q gi|254780892|r 123 S 123 (133)
Q Consensus 123 ~ 123 (133)
.
T Consensus 198 i 198 (462)
T PRK06305 198 I 198 (462)
T ss_pred C
T ss_conf 9
No 184
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=61.06 E-value=14 Score=17.91 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=45.3
Q ss_pred CCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 9489970789987--73899996143488973999963899899999997699889976989899999999
Q gi|254780892|r 47 PNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 (133)
Q Consensus 47 pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~ 115 (133)
.|++++.=.+|.+ .++...+-..-.....++++=|+ .+....+++.++.-|+.|| +..||...+.
T Consensus 127 ~d~vvisGSlP~g~~~~~y~~li~~~~~~g~~vilD~s---g~~L~~~l~~~~~P~lIKP-N~~El~~l~G 193 (309)
T PRK13508 127 VEVVAISGSLPAGLPQDYYAQLIELANNKGKKVVLDCS---GAALQAVLKSPYKPTVIKP-NIEELSQLLG 193 (309)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECC---HHHHHHHHHCCCCCCEECC-CHHHHHHHHC
T ss_conf 99999968889999859999999999855998999897---6999999846577727745-9899999839
No 185
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=61.00 E-value=14 Score=17.90 Aligned_cols=92 Identities=10% Similarity=0.023 Sum_probs=58.0
Q ss_pred CEEEEECCC----HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 779997399----899999999999889899999-------997999999971799948997078998773899996143
Q gi|254780892|r 2 DSLLLVDSS----HIVRKVGRHLFNDFGFMVFEA-------TSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 2 ~~ILiVDD~----~~~r~~l~~~L~~~g~~v~~a-------~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
+|+.++-++ ......+++.++..|++|... .+-...+..+.+ ..||+|++-..-++...++++.+...
T Consensus 135 ~~vaiv~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~i~~~~~-~~pd~v~~~~~~~~~~~~~~q~~~~G 213 (336)
T cd06360 135 KKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPD-DVPDAVFVFFAGGDAIKFVKQYDAAG 213 (336)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 86999468744669999999999997399699999658998567999999987-69899999356604899999999739
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 488973999963899899999997
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGAR 94 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~ 94 (133)
....+|++--....+......+-+
T Consensus 214 ~~~~~~~~g~~~~~~~~~~~~~~~ 237 (336)
T cd06360 214 LKAKIPLIGSGFLTDGTTLGAAGE 237 (336)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 987806998654478888876576
No 186
>PRK13117 consensus
Probab=60.89 E-value=14 Score=17.89 Aligned_cols=31 Identities=16% Similarity=-0.044 Sum_probs=13.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 8897399996389989999999769988997
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
..++|+++==|-.+.++..++++.||++.+.
T Consensus 203 ~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIV 233 (268)
T PRK13117 203 YNAPPPLQGFGISEPEQVKAAIKAGAAGAIS 233 (268)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 4799869983789999999998638998998
No 187
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=60.87 E-value=14 Score=17.89 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=57.9
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 7799973998----9999999999988989999-------9997999999971799948997078998773899996143
Q gi|254780892|r 2 DSLLLVDSSH----IVRKVGRHLFNDFGFMVFE-------ATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 2 ~~ILiVDD~~----~~r~~l~~~L~~~g~~v~~-------a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
++|.++.++. .....++..++..|.++.. ..+-...+..+.. ..||+|++-..-|+...++++++..
T Consensus 136 ~~vai~~~~~~~g~~~~~~~~~~l~~~g~~vv~~~~~~~~~~d~~~~i~~l~~-~~~d~v~~~~~~~~~~~~~~~~~~~- 213 (334)
T cd06342 136 KKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKA-ANPDAVFFGGYYPEAGPLVRQMRQL- 213 (334)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHC-
T ss_conf 68999915655445579999999997498399999658876665789999986-5999999926755899999999976-
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 488973999963899899999997699889976989
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
..+.+++..++.........+-+..---|..-|+.
T Consensus 214 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 248 (334)
T cd06342 214 -GLKAPFMGGDGLCDPEFIKIAGDAAEGTYATFPGG 248 (334)
T ss_pred -CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf -99975999677787899986457545818994047
No 188
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=60.73 E-value=14 Score=17.88 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=54.2
Q ss_pred HHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCCEEEECCCCC----CCCHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 999999999889899999997---99999997179994899707899----87738999961434889739999638998
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSV---CEAREFCEKELLPNYLVIDESME----GVLEFIAHVRQMPLGTDVFVYYLLMEVDF 86 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g---~eAl~~~~~~~~pdlii~D~~mP----~~~~l~~~ir~~~~~~~~pii~lT~~~~~ 86 (133)
-.++..+|+..||+|.--.+. ++-++.+.+ ..||+|-+.-.|- ++-.+..+++.. +-.-|++++-+ +.+
T Consensus 121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e-~k~d~v~~SalMTttm~~~~~viE~L~ee--GiRd~v~v~vG-GAp 196 (227)
T COG5012 121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE-LKPDLVSMSALMTTTMIGMKDVIELLKEE--GIRDKVIVMVG-GAP 196 (227)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-CCCCEEECHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEC-CCC
T ss_conf 999999998379578743899987999999997-28756640687788799799999999976--88547488526-862
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 999999976998899769
Q gi|254780892|r 87 EKMIAGARAGANSFLLKP 104 (133)
Q Consensus 87 ~~~~~a~~~Ga~~yl~KP 104 (133)
-...=+-+.||+.|-.-+
T Consensus 197 vtq~~a~~iGAD~~~~dA 214 (227)
T COG5012 197 VTQDWADKIGADAYAEDA 214 (227)
T ss_pred CCHHHHHHHCCCCCCCCH
T ss_conf 468999971877567677
No 189
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=60.73 E-value=14 Score=17.87 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=60.6
Q ss_pred HHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCCEEEECCCC----C---CCCHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 999999998898999--999979999999717999489970789----9---8773899996143488973999963899
Q gi|254780892|r 15 KVGRHLFNDFGFMVF--EATSVCEAREFCEKELLPNYLVIDESM----E---GVLEFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 15 ~~l~~~L~~~g~~v~--~a~~g~eAl~~~~~~~~pdlii~D~~m----P---~~~~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
....+.++..|+++. -+.+|...++.+.. ..||.|=+|-.+ . ....+++.+.......++++| .++-.+
T Consensus 135 ~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~-l~~d~iKld~~~v~~~~~~~~~~~~l~~l~~~a~~~~i~vi-aegVE~ 212 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLKR-LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVET 212 (240)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHH-CCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECCH
T ss_conf 9999999864996886168998766899986-78015440899997364682238999999999998499899-981850
Q ss_pred HHHHHHHHHCCCCE----EEECCCCH
Q ss_conf 89999999769988----99769898
Q gi|254780892|r 86 FEKMIAGARAGANS----FLLKPFNR 107 (133)
Q Consensus 86 ~~~~~~a~~~Ga~~----yl~KP~~~ 107 (133)
.+....+.+.|++- |+.||...
T Consensus 213 ~~~~~~l~~lgi~~~QG~~~~~P~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 99999999859999676912658999
No 190
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=60.66 E-value=14 Score=17.87 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=33.1
Q ss_pred CCCHHHHHHH-HCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8773899996-143488973999963899899999997699889976989
Q gi|254780892|r 58 GVLEFIAHVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 58 ~~~~l~~~ir-~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
+..++....| +-|..-.+--+++|+.-+.+...+|+..|||+.++--..
T Consensus 14 gaaDlag~~rmqyp~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~ 63 (132)
T COG1908 14 GAADLAGTSRMQYPPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCK 63 (132)
T ss_pred CCHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 52002133556489843799963267418999999997389868993441
No 191
>TIGR01334 modD modD protein; InterPro: IPR006242 The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=60.33 E-value=14 Score=17.83 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=68.0
Q ss_pred ECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC-CCHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 7399899999999999889--899999997999999971799948997078998-7738999961434889739999638
Q gi|254780892|r 7 VDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VLEFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 7 VDD~~~~r~~l~~~L~~~g--~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~-~~~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
..|+....+.+.++=+..- ==+.||++-.||+..+. ..||++=+|-=-|. .-++...+ +.....+-+-++|-
T Consensus 169 l~D~~Dw~gai~rLkq~APE~KItvEadt~~qa~~~l~--a~PDilQLdKFtpqQ~~~~~~~l---~~~~~~~tLa~aGG 243 (277)
T TIGR01334 169 LSDNEDWSGAITRLKQQAPEKKITVEADTLKQALAVLR--ADPDILQLDKFTPQQVKELLELL---KLLDKIITLAVAGG 243 (277)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH--CCCCEEECCCCCHHHHHHHHHHH---HHHCCCCCEEEECC
T ss_conf 17800278999887743787726874059899999974--48976632368888999999999---97376765340078
Q ss_pred CCHHHHHHHHHCCCCEEEEC
Q ss_conf 99899999997699889976
Q gi|254780892|r 84 VDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 84 ~~~~~~~~a~~~Ga~~yl~K 103 (133)
-+.+...+-++.|++=|++-
T Consensus 244 iN~~n~a~Y~~~Gi~lfiTS 263 (277)
T TIGR01334 244 INKENVADYLELGIDLFITS 263 (277)
T ss_pred CCHHHHHHHHHCCCEEEEEC
T ss_conf 78778999986252046425
No 192
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=60.30 E-value=14 Score=17.83 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=60.6
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEE----ECCH---HHHHHHHHH---CCCC-C------------EEEEC--CCCCCC
Q ss_conf 99739989999999999988989999----9997---999999971---7999-4------------89970--789987
Q gi|254780892|r 5 LLVDSSHIVRKVGRHLFNDFGFMVFE----ATSV---CEAREFCEK---ELLP-N------------YLVID--ESMEGV 59 (133)
Q Consensus 5 LiVDD~~~~r~~l~~~L~~~g~~v~~----a~~g---~eAl~~~~~---~~~p-d------------lii~D--~~mP~~ 59 (133)
.+||..+...+...+.+...|+.+.. -..| .+.+..+.. ...+ + .-..+ --+||.
T Consensus 12 vLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv 91 (221)
T COG0637 12 TLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALELEGLKPIPGV 91 (221)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 80723999999999999985999888999986277615789999987346664458999999999876413567755119
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE-----------CCCCHHHHHHHHHHH
Q ss_conf 7389999614348897399996389989999999769988997-----------698989999999999
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL-----------KPFNRETLRFAMREL 117 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~-----------KP~~~~~L~~~i~~~ 117 (133)
.+++..++.+. +|+.+.|+..........-..|-.+|.. || .++....+.+++
T Consensus 92 ~~~l~~L~~~~----i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP-~Pd~yL~Aa~~L 155 (221)
T COG0637 92 VELLEQLKARG----IPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKP-APDIYLLAAERL 155 (221)
T ss_pred HHHHHHHHHCC----CCEEEECCCHHHHHHHHHHHCCCHHHCCEEEECCCCCCCCC-CCHHHHHHHHHC
T ss_conf 99999987559----98899749838889999998388331563773210467898-979999999984
No 193
>PRK13113 consensus
Probab=60.22 E-value=14 Score=17.82 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=20.6
Q ss_pred CCCCEEEEEECCCCH------HHHHHHHHCCCCEEEECCCCHH
Q ss_conf 889739999638998------9999999769988997698989
Q gi|254780892|r 72 GTDVFVYYLLMEVDF------EKMIAGARAGANSFLLKPFNRE 108 (133)
Q Consensus 72 ~~~~pii~lT~~~~~------~~~~~a~~~Ga~~yl~KP~~~~ 108 (133)
...+|+++||-++.. .-..+|.++|++++|.--+..+
T Consensus 92 ~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~e 134 (263)
T PRK13113 92 DDTTPIVMMGYYNPIYSRGVDRFLAEAKEAGIDGLIVVDLPPE 134 (263)
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 8998889983136898856999999987779436971799978
No 194
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=60.10 E-value=13 Score=18.13 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCCEEEECCC------CCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHH
Q ss_conf 9999998898999--99997999999971799948997078------998773899996143488973999963899899
Q gi|254780892|r 17 GRHLFNDFGFMVF--EATSVCEAREFCEKELLPNYLVIDES------MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEK 88 (133)
Q Consensus 17 l~~~L~~~g~~v~--~a~~g~eAl~~~~~~~~pdlii~D~~------mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~ 88 (133)
+..+...+|+=|+ .....+++...+..+.. -+=++..- =|+.++-+.++ .....+.+||||=|+--.-++
T Consensus 221 iE~IA~ySGLPVyVKG~Q~~ED~~~al~AGAS-GIWV~NHG~RQl~~~PaaFD~L~~v-AE~V~~rVPIVFDSGvRRG~H 298 (368)
T TIGR02708 221 IEEIAAYSGLPVYVKGPQCPEDADRALKAGAS-GIWVTNHGGRQLDGGPAAFDSLQEV-AEAVDKRVPIVFDSGVRRGQH 298 (368)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCHHHHHH-HHHHCCCCCEEEECCCCCHHH
T ss_conf 89997217983686078886689999972886-2576047750236787520006999-998528556685088432578
Q ss_pred HHHHHHCCCCEE-EECC
Q ss_conf 999997699889-9769
Q gi|254780892|r 89 MIAGARAGANSF-LLKP 104 (133)
Q Consensus 89 ~~~a~~~Ga~~y-l~KP 104 (133)
..+|+.+|||=. |-+|
T Consensus 299 v~KALASGAD~VAlGRP 315 (368)
T TIGR02708 299 VFKALASGADLVALGRP 315 (368)
T ss_pred HHHHHHCCCCEEECCCH
T ss_conf 99987235644301323
No 195
>PRK00830 consensus
Probab=60.10 E-value=14 Score=17.81 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEE------CCC
Q ss_conf 9999717999489970789987-----7389999614348897399996389989999999769-988997------698
Q gi|254780892|r 38 REFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLL------KPF 105 (133)
Q Consensus 38 l~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G-a~~yl~------KP~ 105 (133)
+..++....-.++++|+.--|+ +++++++.+ ...+|+|.--|-+..++..+++..| ++..+. +-+
T Consensus 179 ~~~~~~~G~geil~tdI~rDGt~~G~d~~l~~~i~~---~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~f~~~~~ 255 (273)
T PRK00830 179 AKKVEELGAGEILLTSMDRDGTKDGYDIPITKKISE---EVDIPVIASGGVGNPEHIYEGFSDGKADAALAASIFHFNEY 255 (273)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCC
T ss_conf 999986498868887875779656889699999986---37998899889999999999998389868877005666997
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780892|r 106 NRETLRFAMR 115 (133)
Q Consensus 106 ~~~~L~~~i~ 115 (133)
+..++...+.
T Consensus 256 si~e~k~~L~ 265 (273)
T PRK00830 256 SIREVKEYLR 265 (273)
T ss_pred CHHHHHHHHH
T ss_conf 9999999999
No 196
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=60.04 E-value=14 Score=17.80 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=11.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 799973998999999999998898
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGF 26 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~ 26 (133)
.+..||-|......+++-+...+.
T Consensus 77 ~v~fVE~~~~~~~~i~~N~~~l~~ 100 (198)
T PRK10909 77 GATLLEMDRAVSQQLIKNLATLKA 100 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 899997899999999999998488
No 197
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=59.86 E-value=15 Score=17.78 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=54.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEE
Q ss_conf 779997399899999999999889--8999999979999999717999489970789987--738999961434889739
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g--~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pi 77 (133)
.++++.++|+...+.++..-+.|| |.|....+...-+..+.. .-++.-+.|=|. .+.+..||......++-|
T Consensus 32 ~~i~l~~~D~~~~etv~~V~~rwGG~F~~e~~~~~~~~ir~~k~----~G~vVHLTMYG~~i~~~~~~Ir~~~~~~~ilv 107 (175)
T PRK03958 32 DKILFASEDEHVKESVEDIVERWGGPFKVEVTKSWKKYIREFKD----GGIVVHLTMYGENINDVMDEIREAKTCKPLLI 107 (175)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC----CCEEEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 76787688766899999999861896699976897999863025----88899983688866787767653057887899
Q ss_pred EEEECC
Q ss_conf 999638
Q gi|254780892|r 78 YYLLME 83 (133)
Q Consensus 78 i~lT~~ 83 (133)
| +.+.
T Consensus 108 V-VGae 112 (175)
T PRK03958 108 I-VGAE 112 (175)
T ss_pred E-ECCC
T ss_conf 9-6788
No 198
>PRK13173 consensus
Probab=59.71 E-value=15 Score=17.77 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=33.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 977999739989999999999988989999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~e 36 (133)
|++|.|+|=-.-+...+.+.|+..|+++....+..+
T Consensus 1 M~kI~IiDyg~gNi~Sv~~al~~lg~~~~i~~~~~~ 36 (211)
T PRK13173 1 MTKIALLDYGMGNLHSASKALSAVGAEVSITNDPKV 36 (211)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 987999968944999999999986998899679999
No 199
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.40 E-value=15 Score=17.74 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=47.1
Q ss_pred EEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 99999979999999717999489970789987-738999961434889739999638998999999976998899
Q gi|254780892|r 28 VFEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 28 v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
..++.|-+|+.+.+.. -+|.|++|-.-|.. -+..+.++.. .+. ..+-.||.-..+...+-.+.|++-+.
T Consensus 187 eVEv~~~~q~~~a~~~--g~d~I~LDn~s~~~ik~~v~~~~~~--~~~-v~ieaSGgI~~~ni~~yA~tGvD~Is 256 (272)
T cd01573 187 VVEVDSLEEALAAAEA--GADILQLDKFSPEELAELVPKLRSL--APP-VLLAAAGGINIENAAAYAAAGADILV 256 (272)
T ss_pred EEEECCHHHHHHHHHC--CCCEEEECCCCHHHHHHHHHHHHCC--CCC-EEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 9983999999999846--9999997799999999999997444--887-69999899999999999973999998
No 200
>PRK05211 consensus
Probab=58.90 E-value=15 Score=17.68 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=48.9
Q ss_pred HHHHHHCCCCCEEEECCCCCCC---C--HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH-CCCCEEEE------CCC
Q ss_conf 9999717999489970789987---7--3899996143488973999963899899999997-69988997------698
Q gi|254780892|r 38 REFCEKELLPNYLVIDESMEGV---L--EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR-AGANSFLL------KPF 105 (133)
Q Consensus 38 l~~~~~~~~pdlii~D~~mP~~---~--~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~-~Ga~~yl~------KP~ 105 (133)
++.+++...-.++++|+.--|+ + ++++.++ ....+|+|.--|-+..++..++++ .|+++.+. +-+
T Consensus 154 i~~~~~~G~geIl~t~IdrDG~~~G~dl~l~~~i~---~~~~iPvIasGGv~s~~di~~~~~~~~~~gvi~gs~~~~~~i 230 (248)
T PRK05211 154 VKEVQKRGAGEIVLNMMNQDGVRNGYDLAQLKKVR---AICHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQII 230 (248)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 99999759866999898789972788999999999---746999999888899999999998679841330488888999
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780892|r 106 NRETLRFAMR 115 (133)
Q Consensus 106 ~~~~L~~~i~ 115 (133)
+..++...+.
T Consensus 231 ~l~e~k~~L~ 240 (248)
T PRK05211 231 NIGELKQYLA 240 (248)
T ss_pred CHHHHHHHHH
T ss_conf 9999999999
No 201
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=58.80 E-value=15 Score=17.67 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCC-C----HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH-CCCCEEEE------C
Q ss_conf 999999717999489970789987-7----3899996143488973999963899899999997-69988997------6
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESMEGV-L----EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR-AGANSFLL------K 103 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP~~-~----~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~-~Ga~~yl~------K 103 (133)
+.++.+.....-.++++|+.--|+ . ++++.++ ....+|+|..-|-+..++..++++ .|+++.+. +
T Consensus 153 ~~i~~~~~~G~geil~tdI~~DGt~~G~d~~l~~~i~---~~~~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~~~ 229 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVS---SAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCC
T ss_conf 9999998469878999872576856657999999999---8689999998899999999999987898299882276769
Q ss_pred CCCHHHHHHHH
Q ss_conf 98989999999
Q gi|254780892|r 104 PFNRETLRFAM 114 (133)
Q Consensus 104 P~~~~~L~~~i 114 (133)
-++.+++...+
T Consensus 230 ~~~l~~~k~~L 240 (243)
T cd04731 230 EYTIAELKEYL 240 (243)
T ss_pred CCCHHHHHHHH
T ss_conf 98999999998
No 202
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=58.80 E-value=15 Score=17.67 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=45.5
Q ss_pred EEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9999979999999717999489970789987-73899996143488973999963899899999997699889
Q gi|254780892|r 29 FEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF 100 (133)
Q Consensus 29 ~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~y 100 (133)
.++.|-+|+.+.+.. -+|.|++|-.=|.. -+....+++. .+. ..+-.||.-+.+...+....|++-+
T Consensus 85 VEv~tl~e~~~a~~~--~~d~I~LDn~spe~l~~~v~~l~~~--~~~-v~iEaSGgI~~~ni~~yA~tGvD~I 152 (169)
T pfam01729 85 VEVENLEELEEALEA--GADIIMLDNFSPEEVREAVEELDER--AGR-VLLEVSGGITLDNVLEYAKTGVDVI 152 (169)
T ss_pred EEEEHHHHHHHHHHC--CCCEEEECCCCHHHHHHHHHHHHHH--CCC-EEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 996019989999846--9989997799999999999999975--896-7999618999999999997699999
No 203
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=58.56 E-value=15 Score=17.65 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=48.4
Q ss_pred EECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999979999999717999489970789987-7389999614348897399996389989999999769988997
Q gi|254780892|r 30 EATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 30 ~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
|++|-+||.+.+..+ .|+|++|..=|.. -+..+.++.. ++ .-++=.||.-..+........|+ |||.
T Consensus 192 EVenlE~a~eA~~AG--ADiImLDNm~p~~~~~av~~~~~~--~p-~~~~EaSGGitl~n~~~ya~~gV-D~IS 259 (276)
T TIGR00078 192 EVENLEEAEEAAEAG--ADIIMLDNMKPEEIKEAVELLKGR--NP-NVLVEASGGITLDNIEEYAETGV-DVIS 259 (276)
T ss_pred EECCHHHHHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHC--CC-EEEEEEECCCCHHHHHHHHHCCC-CEEE
T ss_conf 628989999999709--959980698947999999999702--99-08999836998789999840897-5883
No 204
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=58.47 E-value=15 Score=17.64 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=46.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCC-CHHHHHHHHCCCCCCCEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078--9987-7389999614348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES--MEGV-LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~--mP~~-~~l~~~ir~~~~~~~~pii 78 (133)
+||||+|--...-..+.+.++..|..+.......-..+.+. . ++-|++.=- -|.- .++...++.. ...+||+
T Consensus 3 ~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~~~~~~~--~-~~~IIlSpGPg~p~~~~~~~~~i~~~--~~~~PIL 77 (191)
T PRK06895 3 TNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDLDLDEVE--N-FSHILISPGPDVPRAYPQLFAMLERY--YQQKSIL 77 (191)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH--C-CCEEEEECCCCCCCCCCHHHHHHHHH--CCCCCEE
T ss_conf 86999969884899999999877996999847848998985--5-89699908999801052249999986--0689878
Q ss_pred EEECCCCHHHHHHHHHCCCC
Q ss_conf 99638998999999976998
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGAN 98 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~ 98 (133)
-+- -....-|...|+.
T Consensus 78 GIC----lG~Q~i~~~~Gg~ 93 (191)
T PRK06895 78 GVC----LGHQTLCEFFGGT 93 (191)
T ss_pred EEC----HHHHHHHHHHCCE
T ss_conf 982----9999999982957
No 205
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=58.40 E-value=15 Score=17.63 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999999717999489970789987-73899996143488973999
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~ 79 (133)
+.+++.++++.. ++++++++-||| .+-..++=+.-....+||+.
T Consensus 46 ~r~l~~A~~~~a-~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~ 90 (436)
T COG1030 46 QRALQSAEEENA-AAVVLELDTPGGLLDSMRQIVRAILNSPVPVIG 90 (436)
T ss_pred HHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999999985798-479999608972679999999998759997799
No 206
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950 This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=57.66 E-value=16 Score=17.56 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE-----------EECCCCHHHHHHHHHHH
Q ss_conf 98773899996143488973999963899899999997699889-----------97698989999999999
Q gi|254780892|r 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF-----------LLKPFNRETLRFAMREL 117 (133)
Q Consensus 57 P~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~y-----------l~KP~~~~~L~~~i~~~ 117 (133)
||..+++.++|+. ...+.++|.........+-...|+.+| ..|| .|+.+..+++++
T Consensus 116 p~~~~~L~~LR~~----Gy~Lg~iT~G~~~~Q~eKl~~lg~~~fFD~V~~s~e~g~~KP-hP~IF~~Al~~~ 182 (244)
T TIGR02253 116 PDVVDTLMELRES----GYRLGLITDGLTVKQWEKLERLGIRDFFDAVITSEELGVEKP-HPKIFYAALRRL 182 (244)
T ss_pred CCHHHHHHHHHHC----CCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CHHHHHHHHHHH
T ss_conf 7688999999864----778899866877899999998277535770572244477697-858999999970
No 207
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=57.57 E-value=16 Score=17.55 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=70.6
Q ss_pred CEEEEECCCHH-------HHHHHHHHHHHCCCEEEEECCHHH------------------HH-----HHHHHCCCCCEEE
Q ss_conf 77999739989-------999999999988989999999799------------------99-----9997179994899
Q gi|254780892|r 2 DSLLLVDSSHI-------VRKVGRHLFNDFGFMVFEATSVCE------------------AR-----EFCEKELLPNYLV 51 (133)
Q Consensus 2 ~~ILiVDD~~~-------~r~~l~~~L~~~g~~v~~a~~g~e------------------Al-----~~~~~~~~pdlii 51 (133)
++|||+=.+.+ +...|+++|+..||+|..-+-..+ .+ .....+..||+||
T Consensus 78 k~iLiIPE~HTRN~fYleNv~~L~~il~~AG~~VrvGs~~pei~~~~~~~~~~g~~l~lepl~r~~~~l~~~~F~Pc~IL 157 (404)
T pfam08886 78 KNLLLIPENHTRNTFYLENVAALKEILRQAGLNVRIGSLDPEITEPTTLELPNGDTLTLEPLVRKGGRLGLKGFDPCLIL 157 (404)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEEEECCCEEEECCCCCCEEE
T ss_conf 56999247677548899999999999997496699607870126865675589975678878851998885688875799
Q ss_pred ECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECC----CCH----HHH-HHHHHCCCCEEEECCCC-------------HH
Q ss_conf 70789987-738999961434889739999638----998----999-99997699889976989-------------89
Q gi|254780892|r 52 IDESMEGV-LEFIAHVRQMPLGTDVFVYYLLME----VDF----EKM-IAGARAGANSFLLKPFN-------------RE 108 (133)
Q Consensus 52 ~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~----~~~----~~~-~~a~~~Ga~~yl~KP~~-------------~~ 108 (133)
+.-.|.+| .+.++.+..++.. +|.-+=... ..+ +.. .=|-..|.+..+.-|.. .+
T Consensus 158 LNNDLS~GiP~iL~~l~~Q~il--Ppl~~GW~~RrKS~HF~~Y~~v~~eF~~l~~IDpWli~p~f~~c~~idf~~~~g~~ 235 (404)
T pfam08886 158 LNNDLSSGIPEILQGLHEQYLL--PPLHAGWANRRKSNHFSAYDEVAKEFAKLIGIDPWLINPLFSSCGGVDFHDREGEE 235 (404)
T ss_pred ECCCCCCCCCHHHHCCCCCCCC--CCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 7475443683566064655055--98456744101226789999999999997499911135350230762677443699
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|254780892|r 109 TLRFAMRELPQMQKSKDE 126 (133)
Q Consensus 109 ~L~~~i~~~~~~~~~~~~ 126 (133)
.|...+..++...+.+..
T Consensus 236 ~La~~Vd~lL~kI~~KY~ 253 (404)
T pfam08886 236 CLAEKVDALLAKIREKYK 253 (404)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 208
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.46 E-value=16 Score=17.54 Aligned_cols=95 Identities=16% Similarity=0.035 Sum_probs=56.2
Q ss_pred HHHHHHHCC-CEEEEECCHHHHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHCC-CCCCCEEEEEECCCCHHHHHH
Q ss_conf 999999889-89999999799999997---1799948997078998773899996143-488973999963899899999
Q gi|254780892|r 17 GRHLFNDFG-FMVFEATSVCEAREFCE---KELLPNYLVIDESMEGVLEFIAHVRQMP-LGTDVFVYYLLMEVDFEKMIA 91 (133)
Q Consensus 17 l~~~L~~~g-~~v~~a~~g~eAl~~~~---~~~~pdlii~D~~mP~~~~l~~~ir~~~-~~~~~pii~lT~~~~~~~~~~ 91 (133)
+-..|...+ .-|....+.++|++.++ ++.. .++=+-++-|+..+.++.++... ..+++-| -.-+--+.+...+
T Consensus 6 il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi-~~iEITl~tp~a~~~i~~l~~~~~~~p~~~i-GaGTV~~~e~~~~ 83 (209)
T PRK06552 6 ILTKLKANGLVAVVRGESKEEALKISLAVIKGGI-KAIEVTYTNPFASEVIKELVERYKDDPEVLI-GAGTVLDAVTARQ 83 (209)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHHHH
T ss_conf 9999997997999972899999999999998799-8899967897599999999998177998189-8872748999999
Q ss_pred HHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 99769988997698989999999
Q gi|254780892|r 92 GARAGANSFLLKPFNRETLRFAM 114 (133)
Q Consensus 92 a~~~Ga~~yl~KP~~~~~L~~~i 114 (133)
+.++||+ |++-|....++.+.-
T Consensus 84 a~~aGA~-FiVSP~~~~~v~~~a 105 (209)
T PRK06552 84 AILAGAQ-FIVSPSFNRETAKIC 105 (209)
T ss_pred HHHCCCC-EEECCCCCHHHHHHH
T ss_conf 9985998-897699989999999
No 209
>PRK13121 consensus
Probab=57.33 E-value=16 Score=17.52 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=19.3
Q ss_pred CCCCEEEEEECCCCH------HHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 889739999638998------99999997699889976989899
Q gi|254780892|r 72 GTDVFVYYLLMEVDF------EKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 72 ~~~~pii~lT~~~~~------~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
..++|+++||-++.. .-..++.++|+++.|.--+..++
T Consensus 92 ~~~~PivlM~Y~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE 135 (265)
T PRK13121 92 NQTTPVVLMGYANPIERMGYDAFAAAARAAGVDGVLVVDYPPEE 135 (265)
T ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 79999898621459999719999999987298734348999899
No 210
>PRK02747 consensus
Probab=57.09 E-value=16 Score=17.50 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEE------C
Q ss_conf 999999717999489970789987-----7389999614348897399996389989999999769-988997------6
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLL------K 103 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G-a~~yl~------K 103 (133)
+.+..+.+...-.++++|+.--|+ +++++.++. ...+|+|...|-+..++..++++.| +.+.+. +
T Consensus 160 ~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~---~~~~pvIasGGv~~~~di~~~~~~~~~~av~~g~~~~~~ 236 (257)
T PRK02747 160 EFAQKVVSLGAGEILLTSMDRDGTKAGFDLPLTRAIAD---AVRVPVIASGGVGTLDHLVEGVRDGHATAVLAASIFHFG 236 (257)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 99999997099889999883557326788699999986---079989997799999999999983898499883267769
Q ss_pred CCCHHHHHHHHH
Q ss_conf 989899999999
Q gi|254780892|r 104 PFNRETLRFAMR 115 (133)
Q Consensus 104 P~~~~~L~~~i~ 115 (133)
-++..++...++
T Consensus 237 ~~~l~~ak~~L~ 248 (257)
T PRK02747 237 TYTIGEAKAHMA 248 (257)
T ss_pred CCCHHHHHHHHH
T ss_conf 989999999999
No 211
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=57.04 E-value=16 Score=17.50 Aligned_cols=76 Identities=8% Similarity=-0.078 Sum_probs=44.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCCEEEECC--CCCCCCHHH-HHHHHCCCCCCCE
Q ss_conf 79997399899999999999889899999997---99999997179994899707--899877389-9996143488973
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV---CEAREFCEKELLPNYLVIDE--SMEGVLEFI-AHVRQMPLGTDVF 76 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g---~eAl~~~~~~~~pdlii~D~--~mP~~~~l~-~~ir~~~~~~~~p 76 (133)
|||++|--..+-..+.+.|+..|..|....+. ...++.+. ..||.|++.= .-|.-.+.+ ..++.. ....+|
T Consensus 2 rILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~~--~~~dgIILSpGPg~P~~~~~~~~~i~~~-~~~~iP 78 (221)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAVA--AGFDGVLLSPGPGTPERAGASIDMVRAC-AAAGTP 78 (221)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH--CCCCEEEECCCCCCHHHCCCCHHHHHHH-HCCCCC
T ss_conf 7999938893399999999877991899989989988998763--4899899969999801167248899875-325998
Q ss_pred EEEEE
Q ss_conf 99996
Q gi|254780892|r 77 VYYLL 81 (133)
Q Consensus 77 ii~lT 81 (133)
|+-+-
T Consensus 79 ILGIC 83 (221)
T PRK07765 79 LLGVC 83 (221)
T ss_pred EEEEE
T ss_conf 89870
No 212
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=56.79 E-value=16 Score=17.47 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=31.8
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 7389999614348897399996389989999999769988997
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.++.+++|. ...+||+...+..+.+...++++.|..|++.
T Consensus 274 ~~~a~~ik~---~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~ 313 (343)
T cd04734 274 LPLAARIKQ---AVDLPVFHAGRIRDPAEAEQALAAGHADMVG 313 (343)
T ss_pred HHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEHH
T ss_conf 889999999---7298599979989999999999879962169
No 213
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.30 E-value=17 Score=17.42 Aligned_cols=103 Identities=8% Similarity=0.050 Sum_probs=62.2
Q ss_pred CEEEE--ECCCH---HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 77999--73998---999999999998898999999-------9799999997179994899707899877389999614
Q gi|254780892|r 2 DSLLL--VDSSH---IVRKVGRHLFNDFGFMVFEAT-------SVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQM 69 (133)
Q Consensus 2 ~~ILi--VDD~~---~~r~~l~~~L~~~g~~v~~a~-------~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~ 69 (133)
+|+-+ .+|+. .....+++.+...|.+|.... +-..-+..+.+ ..||+|++-..-++...+++++++.
T Consensus 137 k~vav~~~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~-~~pD~v~~~~~~~~~~~~~~q~~~~ 215 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLN-SKPDLIVISALAADGGNLVRQLREL 215 (344)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHC
T ss_conf 889999948975899999999999987698589987168986017899999875-1999999945742599999999976
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 34889739999638998999999976998899769898
Q gi|254780892|r 70 PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNR 107 (133)
Q Consensus 70 ~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~ 107 (133)
.-+.|++.-++..+.+....+-+..---|..-|+.+
T Consensus 216 --G~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 251 (344)
T cd06348 216 --GYNGLIVGGNGFNTPNVFPVCQAACDGVLVAQAYSP 251 (344)
T ss_pred --CCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCC
T ss_conf --999709986677878999867898598799971687
No 214
>PRK07413 hypothetical protein; Validated
Probab=55.34 E-value=17 Score=17.33 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCEEEECCCCC----CC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 94899707899----87---7389999614348897399996389989999999
Q gi|254780892|r 47 PNYLVIDESME----GV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA 93 (133)
Q Consensus 47 pdlii~D~~mP----~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~ 93 (133)
.|+||+|=.+. |. .+++..+++.|.. +-+ ++|+.+.++...+..
T Consensus 126 ydlVVLDEIn~Al~~Gll~~deVl~~L~~RP~~--~eV-VlTGR~AP~eLIe~A 176 (382)
T PRK07413 126 YSVVVLDELNPVLDLGLLPVDEVVKTLKSRPEG--LEI-IITGRAAPQSLLDIA 176 (382)
T ss_pred CCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCC--CEE-EEECCCCCHHHHHHH
T ss_conf 898997216678457980599999999709999--889-995999999999862
No 215
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP . 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=54.76 E-value=18 Score=17.27 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=22.1
Q ss_pred CEEEEECCC-H--HHHHHHHHHHHHCCC-EEEEE-CCH
Q ss_conf 779997399-8--999999999998898-99999-997
Q gi|254780892|r 2 DSLLLVDSS-H--IVRKVGRHLFNDFGF-MVFEA-TSV 34 (133)
Q Consensus 2 ~~ILiVDD~-~--~~r~~l~~~L~~~g~-~v~~a-~~g 34 (133)
|||++|||| - ++-+.+..+|+..|. +|.-. .++
T Consensus 361 krVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasP 398 (467)
T TIGR01134 361 KRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASP 398 (467)
T ss_pred CEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 75899942412071378999999872983898762588
No 216
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=54.73 E-value=18 Score=17.27 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=50.6
Q ss_pred CCEEEEC-CCCCC--C-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9489970-78998--7-738999961434889739999638998999999976998899769898999999999999999
Q gi|254780892|r 47 PNYLVID-ESMEG--V-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 47 pdlii~D-~~mP~--~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
..++|+| .||=. . ..+++.+.. ..+++.+|+.|. +++..-....+-...|=.||++...+..+++.+.+...
T Consensus 120 ~Kv~IiDEvhmls~~a~nallKtlEe--Pp~~~~Filatt--e~~ki~~tI~SRcq~f~f~~i~~~~i~~~L~~I~~~E~ 195 (541)
T PRK05563 120 YKVYIMDEVHMLSQGAVNAFLKTLEE--PPSNVIFILATT--DPQKLPITILSRCQRFDFKRIKVKDIFKRLRKIVEEQG 195 (541)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHC--CCCCCEEEEECC--CCCCCCHHHHHHEEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 05999977233899999999999854--877756999769--84427455674213577543899999999999999849
Q ss_pred H
Q ss_conf 9
Q gi|254780892|r 123 S 123 (133)
Q Consensus 123 ~ 123 (133)
.
T Consensus 196 i 196 (541)
T PRK05563 196 I 196 (541)
T ss_pred C
T ss_conf 9
No 217
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=54.65 E-value=18 Score=17.26 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=46.7
Q ss_pred EEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 99999979999999717999489970789987-738999961434889739999638998999999976998899
Q gi|254780892|r 28 VFEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 28 v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
..++.|-+||.+.+.. -+|.|.+|-.-|.. -+..+.++. .+. ..+-.||.-+.+...+-...|++-+-
T Consensus 185 eVEv~tl~ea~~a~~~--g~D~I~LDn~~~~~~~~~v~~~~~---~~~-v~ieaSGgI~~~ni~~ya~~GvD~Is 253 (269)
T cd01568 185 EVEVETLEEAEEALEA--GADIIMLDNMSPEELKEAVKLLKG---LPR-VLLEASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred EEEECCHHHHHHHHHC--CCCEEEECCCCHHHHHHHHHHHCC---CCC-EEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 9994989999999976--999999879899999999998477---998-59999899999999999975999999
No 218
>PRK13171 consensus
Probab=52.72 E-value=19 Score=17.07 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=33.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 977999739989999999999988989999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~e 36 (133)
|++|-|+|=..-+...+...|+..|+++....+..+
T Consensus 1 M~~I~IiDyg~gNi~Sv~~al~~lg~~~~ii~~~~~ 36 (200)
T PRK13171 1 MTDVALIDAGGANLGSVRYALERLGVEARVVRDAAG 36 (200)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 987999968951799999999984998799789999
No 219
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=52.69 E-value=19 Score=17.07 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=9.2
Q ss_pred HHHHHHHHHHCCCEEEEEC
Q ss_conf 9999999998898999999
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEAT 32 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~ 32 (133)
.+.+.+.++..||++..+.
T Consensus 18 ~~gi~~~a~~~Gy~~~i~~ 36 (268)
T cd06323 18 KDGAQKEAKELGYELTVLD 36 (268)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999997599899981
No 220
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=52.63 E-value=19 Score=17.06 Aligned_cols=94 Identities=9% Similarity=0.040 Sum_probs=54.6
Q ss_pred EEEEECC-CHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCCEEEECC------CCCCCCHHHHHHHHCCCCC
Q ss_conf 7999739-9899999999999889899999997--99999997179994899707------8998773899996143488
Q gi|254780892|r 3 SLLLVDS-SHIVRKVGRHLFNDFGFMVFEATSV--CEAREFCEKELLPNYLVIDE------SMEGVLEFIAHVRQMPLGT 73 (133)
Q Consensus 3 ~ILiVDD-~~~~r~~l~~~L~~~g~~v~~a~~g--~eAl~~~~~~~~pdlii~D~------~mP~~~~l~~~ir~~~~~~ 73 (133)
+|++.+| =--.+.....+++.+|+++..+..+ .+.++.+.. ..+++|++.- .++|.-.+.+..+.+
T Consensus 104 ~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~---- 178 (396)
T COG0626 104 HVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPSNPLLEVPDIPAIARLAKAY---- 178 (396)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHHC----
T ss_conf 89845776432999999999856859999789975889987446-6834999967999630555699999999864----
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 97399996389989999999769988997
Q gi|254780892|r 74 DVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 74 ~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
. .++++=.--..-..++.++.||+=.+.
T Consensus 179 g-~~vvVDNTfatP~~q~PL~~GaDIVvh 206 (396)
T COG0626 179 G-ALVVVDNTFATPVLQRPLELGADIVVH 206 (396)
T ss_pred C-CEEEEECCCCCCCCCCHHHHCCCEEEE
T ss_conf 9-889998896622016855509978998
No 221
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=52.62 E-value=19 Score=17.06 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHHHHCCCCCEEEECCCCC-CC-------C--------HHHHHHHHCCCCCCCEEEEEECCCCHHH----HHHHHHC
Q ss_conf 9999997179994899707899-87-------7--------3899996143488973999963899899----9999976
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESME-GV-------L--------EFIAHVRQMPLGTDVFVYYLLMEVDFEK----MIAGARA 95 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP-~~-------~--------~l~~~ir~~~~~~~~pii~lT~~~~~~~----~~~a~~~ 95 (133)
+++..+.+. .+.+=++-+.+| +| . +.....+......++|.|+||+--+.+. ..-|+++
T Consensus 189 ~~~kefs~~-~ygvDvlKvE~Pvn~~~veg~~~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~a 267 (326)
T PRK04161 189 GAMKVFSDK-RFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVSAKLFQETLYFAAEA 267 (326)
T ss_pred HHHHHHCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999996144-5699779852677600102457665413699999999998735399979983999989999999999986
Q ss_pred CCC--EEEE
Q ss_conf 998--8997
Q gi|254780892|r 96 GAN--SFLL 102 (133)
Q Consensus 96 Ga~--~yl~ 102 (133)
||. +||.
T Consensus 268 Gasf~G~L~ 276 (326)
T PRK04161 268 GAQFNGVLC 276 (326)
T ss_pred CCCCCCEEE
T ss_conf 998456765
No 222
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=51.89 E-value=20 Score=16.99 Aligned_cols=93 Identities=9% Similarity=0.056 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCC---------CCC--CCHHHHHHHHCCCCCCCEEEE
Q ss_conf 999999999998898999-99997999999971799948997078---------998--773899996143488973999
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDES---------MEG--VLEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~---------mP~--~~~l~~~ir~~~~~~~~pii~ 79 (133)
.....++.+=+++|.-+. .+++-+||......+ +|+|=+-+. .+. -+++++++++. ++|+|.
T Consensus 106 ~~~~~i~~i~~~~~~l~MAD~st~eea~~A~~~G--~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~----~~pvIa 179 (222)
T PRK01130 106 TLAELVKRIKEKPGQLLMADCSTLEEGLAAAKLG--FDFIGTTLSGYTEYTEGETPEEPDFALLKELLKA----GCPVIA 179 (222)
T ss_pred CHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCC--CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC----CCCEEE
T ss_conf 8999999999982987898548899999999849--9999723345676767787899869999999958----998997
Q ss_pred EECCCCHHHHHHHHHCCCCEEEEC-CCCHHHH
Q ss_conf 963899899999997699889976-9898999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLK-PFNRETL 110 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~K-P~~~~~L 110 (133)
=-....++...+|+++||...++= -+++-.+
T Consensus 180 EGri~tPe~a~~al~~GA~aVvVGsAITrP~~ 211 (222)
T PRK01130 180 EGRINTPEQAKKALELGAHAVVVGSAITRPEE 211 (222)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 47989999999999849989998975479899
No 223
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=51.76 E-value=20 Score=16.98 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=57.2
Q ss_pred EEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 99999979999999717999489970789987--7389999614348897399996389989999999769988997698
Q gi|254780892|r 28 VFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF 105 (133)
Q Consensus 28 v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~ 105 (133)
+..........+.+.... +|.|++|..--.. .++...++........|++ =....+.....++++.||.+.+.--+
T Consensus 16 ~~~~~~sp~~~Ei~a~~G-~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~iV-Rvp~~~~~~i~~~LD~Ga~GiivP~V 93 (249)
T TIGR03239 16 CWSALGNPITTEVLGLAG-FDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVV-RPPWNEPVIIKRLLDIGFYNFLIPFV 93 (249)
T ss_pred EEECCCCHHHHHHHHCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE-ECCCCCHHHHHHHHCCCCCEEEECCC
T ss_conf 874689989999997189-6999981044899999999999999846998489-79999878999997089987895174
Q ss_pred C-HHHHHHHHHH
Q ss_conf 9-8999999999
Q gi|254780892|r 106 N-RETLRFAMRE 116 (133)
Q Consensus 106 ~-~~~L~~~i~~ 116 (133)
+ .++....++.
T Consensus 94 ~t~eea~~~v~a 105 (249)
T TIGR03239 94 ESAEEAERAVAA 105 (249)
T ss_pred CCHHHHHHHHHH
T ss_conf 559999999997
No 224
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=51.65 E-value=20 Score=16.97 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=56.8
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHHHHCC---CCC--------------EEEEC-CCCCCC
Q ss_conf 973998999999999998898999999--------9799999997179---994--------------89970-789987
Q gi|254780892|r 6 LVDSSHIVRKVGRHLFNDFGFMVFEAT--------SVCEAREFCEKEL---LPN--------------YLVID-ESMEGV 59 (133)
Q Consensus 6 iVDD~~~~r~~l~~~L~~~g~~v~~a~--------~g~eAl~~~~~~~---~pd--------------lii~D-~~mP~~ 59 (133)
+||..+.........++..|+.+.... ...+....+.+.. .++ .+--. --+||.
T Consensus 18 LvDSe~~~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv 97 (222)
T PRK10826 18 LIDSEPLWQRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPDRQEVVQRIIARVISLIEETRPLLPGV 97 (222)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 33489999999999999879899979999997198899999999986788898899999999999999986269818669
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 738999961434889739999638998999999976998899-----------7698989999999999
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-----------LKPFNRETLRFAMREL 117 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-----------~KP~~~~~L~~~i~~~ 117 (133)
.+++..+++. ++++-+.|+..........-..|..+|+ .|| +++-+..+++++
T Consensus 98 ~e~L~~l~~~----g~~l~i~Ts~~~~~~~~~L~~~gl~~~Fd~iv~~ddv~~~KP-~Pe~yl~A~~~l 161 (222)
T PRK10826 98 REALALCKAQ----GLKIGLASASPLHMLEAVLTMLDLRDYFDALASAEKLPYSKP-HPEVYLNCAAKL 161 (222)
T ss_pred HHHHHHHHHC----CCCEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 9999999977----997588628848999999987499641105763532567799-849999999995
No 225
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=51.47 E-value=17 Score=17.44 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=19.0
Q ss_pred CCCE-EEEECCHH---HHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 8989-99999979---99999971799948997078998
Q gi|254780892|r 24 FGFM-VFEATSVC---EAREFCEKELLPNYLVIDESMEG 58 (133)
Q Consensus 24 ~g~~-v~~a~~g~---eAl~~~~~~~~pdlii~D~~mP~ 58 (133)
.|+. +.++.+|. ++++.+.+... |+|++|.|.|+
T Consensus 125 ~g~~LiITvDcGi~a~e~i~~a~~~Gi-dvIVtDHH~~~ 162 (574)
T PRK11070 125 RGAQLIVTVDNGISSHAGVAHAKSLGI-PVIVTDHHLPG 162 (574)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf 599999995785302999999997799-99997899997
No 226
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=51.26 E-value=20 Score=16.93 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=39.7
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCC------EEEEC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999961434889739999638998999999976998------89976-989899999999999999999
Q gi|254780892|r 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGAN------SFLLK-PFNRETLRFAMRELPQMQKSK 124 (133)
Q Consensus 63 ~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~------~yl~K-P~~~~~L~~~i~~~~~~~~~~ 124 (133)
++.++++. ..++|||-+.+-.+-++..+.+.+||+ .++.+ |.-.+++...+.+.++.+...
T Consensus 231 v~~l~~~~-~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~ 298 (310)
T COG0167 231 VAELYKRL-GGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFE 298 (310)
T ss_pred HHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999842-899748984686969999999982975640411210208509999999999999981998
No 227
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=50.60 E-value=21 Score=16.87 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH-------HHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHC--CCCCCCEEEEE
Q ss_conf 99999999999889899999997-------999999971799948997078--99877389999614--34889739999
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVFEATSV-------CEAREFCEKELLPNYLVIDES--MEGVLEFIAHVRQM--PLGTDVFVYYL 80 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~~a~~g-------~eAl~~~~~~~~pdlii~D~~--mP~~~~l~~~ir~~--~~~~~~pii~l 80 (133)
--.+.++.+.+..|..+..+.++ .++++.+..+. .|+|++|-- .|.-.+...+++.. ...+.-.++++
T Consensus 43 gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~-~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl 121 (196)
T pfam00448 43 AAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAEN-YDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVL 121 (196)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 89999999998639817814877787899999999988468-99999989998747677899999998522873028998
Q ss_pred ECCCCHHHHHHHH---H-CCCCEEEECCCCHH
Q ss_conf 6389989999999---7-69988997698989
Q gi|254780892|r 81 LMEVDFEKMIAGA---R-AGANSFLLKPFNRE 108 (133)
Q Consensus 81 T~~~~~~~~~~a~---~-~Ga~~yl~KP~~~~ 108 (133)
++....+...++. . .|.+..+.--++..
T Consensus 122 ~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet 153 (196)
T pfam00448 122 DATTGQNALNQAKAFNEAVGITGVILTKLDGD 153 (196)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 56778213789998760047762688840578
No 228
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=50.36 E-value=21 Score=16.85 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEEEE
Q ss_conf 99999997179994899707899877-389999614348897399996
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYYLL 81 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~lT 81 (133)
+.+++..+++. .++|+++++-|||. .-.+.+...-....+|++..-
T Consensus 19 ~r~l~~A~~~~-a~avvl~idTpGG~v~~~~~I~~~i~~s~vpvi~~V 65 (187)
T cd07020 19 ERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILASPVPVVVYV 65 (187)
T ss_pred HHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999998689-989999985896078999999999981899989998
No 229
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=50.24 E-value=21 Score=16.83 Aligned_cols=74 Identities=20% Similarity=0.124 Sum_probs=53.7
Q ss_pred HHHHCCCE--------EEEECCHHHHHHHHHHCC-CCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEEECCCCHHH
Q ss_conf 99988989--------999999799999997179-994899707899877--3899996143488973999963899899
Q gi|254780892|r 20 LFNDFGFM--------VFEATSVCEAREFCEKEL-LPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYLLMEVDFEK 88 (133)
Q Consensus 20 ~L~~~g~~--------v~~a~~g~eAl~~~~~~~-~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~lT~~~~~~~ 88 (133)
+-++.|+. -..|.-|.=|+|+++|.. ..|.|+.-+-= ||+ |+..-+|+. .|.|.||-+-+ .|.+-
T Consensus 133 L~q~~GlTfi~PFDdPlVIAGQGT~alEil~Q~~~~~davFVpvGG-GGLiAGVA~~~K~l--~P~IkvIGVEp-~DS~a 208 (508)
T TIGR01124 133 LAQEKGLTFIHPFDDPLVIAGQGTVALEILRQVAEDLDAVFVPVGG-GGLIAGVAALVKQL--MPEIKVIGVEP-TDSDA 208 (508)
T ss_pred HHHHCCCEEECCCCCCCEECCCHHHHHHHHHCCCCCCCEEEEECCC-CHHHHHHHHHHHHC--CCCEEEEEECC-CHHHH
T ss_conf 9973688652788886403251066687650576847688871177-36899999999722--89618997478-65999
Q ss_pred HHHHHHCCC
Q ss_conf 999997699
Q gi|254780892|r 89 MIAGARAGA 97 (133)
Q Consensus 89 ~~~a~~~Ga 97 (133)
+.+++++|=
T Consensus 209 m~~sL~AG~ 217 (508)
T TIGR01124 209 MKQSLEAGE 217 (508)
T ss_pred HHHHHHCCC
T ss_conf 999985688
No 230
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=50.23 E-value=21 Score=16.83 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=22.8
Q ss_pred CEEEEECCCHHHHHHHH---HHHHHCCCEEEEECC
Q ss_conf 77999739989999999---999988989999999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGR---HLFNDFGFMVFEATS 33 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~---~~L~~~g~~v~~a~~ 33 (133)
+|||||||=-.+..-+. ++++..|-+|.++..
T Consensus 115 ~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aF 149 (175)
T TIGR01090 115 QRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAF 149 (175)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 90899832201267899999999985961687455
No 231
>TIGR01684 viral_ppase viral phosphatase; InterPro: IPR007827 This family contains uncharacterised baculoviral proteins..
Probab=50.10 E-value=21 Score=16.82 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHH--HCCCEEEEE-CCH-H-HHH-----------------HHHH-H---CCCCCEEEECC
Q ss_conf 9779997399899999999999--889899999-997-9-999-----------------9997-1---79994899707
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFN--DFGFMVFEA-TSV-C-EAR-----------------EFCE-K---ELLPNYLVIDE 54 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~--~~g~~v~~a-~~g-~-eAl-----------------~~~~-~---~~~pdlii~D~ 54 (133)
|..+--.||-...|..++..++ -+|.-.... +.. . +.| -.+. + =..|.+|+-|+
T Consensus 68 ~~~f~c~Ddm~dlR~~lk~~fK~~~lG~~fVl~R~k~~~y~cLnEW~V~~~~~~~kstei~~L~~~~~~~e~PHV~VFDl 147 (323)
T TIGR01684 68 LQVFSCADDMKDLRAHLKTAFKLSYLGHVFVLFRHKPAMYACLNEWLVLELEYLSKSTEIYNLNLESKVFEPPHVVVFDL 147 (323)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCEEEECCCCCCCEEECCCCCCEEECCCEEEECC
T ss_conf 55653241468988873131252103269997358988578512100000201211341110265320323780589807
Q ss_pred CCC-------------CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH-CCCCE-E
Q ss_conf 899-------------8773899996143488973999963899899999997-69988-9
Q gi|254780892|r 55 SME-------------GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR-AGANS-F 100 (133)
Q Consensus 55 ~mP-------------~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~-~Ga~~-y 100 (133)
..= -.++.+.++|.. =.|++|.||++.++...+|+ .|.+. |
T Consensus 148 DsTLITd~~~V~iRD~~iY~~L~eLk~~-----gc~L~LWSYGdr~HV~~Sm~~vkl~~RY 203 (323)
T TIGR01684 148 DSTLITDEEEVRIRDPRIYDSLEELKKR-----GCILVLWSYGDRDHVVESMRKVKLDRRY 203 (323)
T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHHC-----CEEEEEEECCCHHHHHHHHHHCCCCCCE
T ss_conf 7875565566412686003479999747-----8089994039978999999860777512
No 232
>PRK10742 putative methyltransferase; Provisional
Probab=50.08 E-value=21 Score=16.82 Aligned_cols=100 Identities=9% Similarity=-0.081 Sum_probs=59.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE-----------EEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHH-HHHHHH
Q ss_conf 7999739989999999999988989-----------99999979999999717999489970789987--738-999961
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFM-----------VFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF-IAHVRQ 68 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~-----------v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l-~~~ir~ 68 (133)
+|-++|-++.+...+..-|+..--+ .....+..+.+..+ ...||+|.+|-+.|.- ..+ -+.++.
T Consensus 112 ~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds~~~L~~~--~~~~DVIYLDPMFP~rkKsAlvKKeMq~ 189 (250)
T PRK10742 112 RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQKSALVKKEMRV 189 (250)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHC--CCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 69999788999999999999987381558999961678658689999735--8898889973667765541223437999
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC-CCCHHHH
Q ss_conf 43488973999963899899999997699889976-9898999
Q gi|254780892|r 69 MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK-PFNRETL 110 (133)
Q Consensus 69 ~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~K-P~~~~~L 110 (133)
..... -+..+......-|+.......++| |.....|
T Consensus 190 l~~Lv------g~d~Da~~LL~~Al~~a~~RVVVKRP~~A~~L 226 (250)
T PRK10742 190 FQSLV------GPDLDADGLLEPARLLATKRVVVKRPDYAPPL 226 (250)
T ss_pred HHHHH------CCCCCHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 99985------78837899999999667884998788887444
No 233
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=49.86 E-value=21 Score=16.80 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred CEEEEE-CCCHH---HHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 779997-39989---99999999998898999999-------97999999971799948997078998773899996143
Q gi|254780892|r 2 DSLLLV-DSSHI---VRKVGRHLFNDFGFMVFEAT-------SVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 2 ~~ILiV-DD~~~---~r~~l~~~L~~~g~~v~~a~-------~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
+|+-++ +|++. ....++..+...|.++.... +-...+..+.+ ..||+|++-..-++...+++++++..
T Consensus 137 ~~vaiv~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~i~~i~~-~~~d~v~~~~~~~~~~~~~~~~~~~g 215 (299)
T cd04509 137 KKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKA-AKPDVIVLCGSGEDAATILKQAAEAG 215 (299)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 77999557740679999999999998799799998469999899999999996-69999999077189999999999759
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 48897399996389989999999769988997698
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF 105 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~ 105 (133)
...+.+++..++.........+-+..---+..-|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~ 250 (299)
T cd04509 216 LTGGYPILGITLGLSDVLLEAGGEAAEGVLTGTPY 250 (299)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf 98897399956767889999788872876999735
No 234
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=49.71 E-value=17 Score=17.31 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=28.4
Q ss_pred CCCCEEEECCCC-----CCCCHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 999489970789-----98773899996143488973999963899
Q gi|254780892|r 45 LLPNYLVIDESM-----EGVLEFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 45 ~~pdlii~D~~m-----P~~~~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
..|++.+||--+ |---|++.-+.......++||+++|-..+
T Consensus 145 t~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~ 190 (352)
T COG4148 145 TAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190 (352)
T ss_pred CCCCEEEECCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 4977343068403236510467789999987621887899936899
No 235
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=49.37 E-value=22 Score=16.75 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 999999999998898999-999979999999717999489970-789987---738999961434889739999638998
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDF 86 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~ 86 (133)
.....+.......|.++. +++|.+|.-..+.. . +++|=+. .++-.. .+.+.++... ...+..+|--||-...
T Consensus 145 ~~l~~l~~~a~~lgl~~LvEvh~~~El~~al~~-~-a~iIGINNRnL~tf~vd~~~t~~L~~~-ip~~~~~VsESGI~~~ 221 (254)
T pfam00218 145 ELLEELYEYARSLGMEPLVEVHNEEELERALAL-G-AKLIGVNNRNLKTFEVDLNTTRRLAPM-VPEDVLLVAESGISTP 221 (254)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC-C-CCEEEECCCCHHHHHCCHHHHHHHHHH-CCCCCEEEECCCCCCH
T ss_conf 999999999998488679886899999999848-9-978963278846510057999999955-8989879983899999
Q ss_pred HHHHHHHHCCCCEEEEC
Q ss_conf 99999997699889976
Q gi|254780892|r 87 EKMIAGARAGANSFLLK 103 (133)
Q Consensus 87 ~~~~~a~~~Ga~~yl~K 103 (133)
++.......|++.||.=
T Consensus 222 ~di~~l~~~G~~~~LIG 238 (254)
T pfam00218 222 EDVEKLAKHGANAFLVG 238 (254)
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 99999998799999989
No 236
>PRK07102 short chain dehydrogenase; Provisional
Probab=49.32 E-value=22 Score=16.75 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=36.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 977999739989999999999988989999999799999997
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE 42 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~ 42 (133)
||+|||.=-+.=+...+...|-..|++|..+.-..+.++.+.
T Consensus 1 MK~vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDTERLERIA 42 (243)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 997999157459999999999987998999989889999999
No 237
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=49.20 E-value=22 Score=16.74 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=45.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH---CCCCCEEEECCCCCC-CCHHHHHHHHCCCCCCCE
Q ss_conf 9779997399899999999999889899999997999999971---799948997078998-773899996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK---ELLPNYLVIDESMEG-VLEFIAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~---~~~pdlii~D~~mP~-~~~l~~~ir~~~~~~~~p 76 (133)
|+||-||=|..+.. -|+..|++++.+.+.+||.+.+.+ +.+ .+|++--.+-. ..+.+.+.+ ...+|
T Consensus 3 myKIaVvGd~Dsvl-----gF~~lG~dvfpv~~~eEa~~~l~~La~~~y-~II~ITE~~a~~i~~~i~~y~----~~~lP 72 (104)
T PRK01395 3 MYKIGVIGDKDSIL-----PFKALGFDVFPVIEEQEARNTLRKLAMEDY-AIIYITEDIAKDIPETIERYD----NQVLP 72 (104)
T ss_pred CEEEEEECCHHHHH-----HHHHCCEEEEECCCHHHHHHHHHHHHHCCE-EEEEEEHHHHHHHHHHHHHHH----CCCCC
T ss_conf 21799986857878-----888658047854887999999999986792-799972999845699999985----25787
Q ss_pred EE-EEECCC
Q ss_conf 99-996389
Q gi|254780892|r 77 VY-YLLMEV 84 (133)
Q Consensus 77 ii-~lT~~~ 84 (133)
.| .+-+..
T Consensus 73 aII~IP~~~ 81 (104)
T PRK01395 73 AIILIPSNQ 81 (104)
T ss_pred EEEECCCCC
T ss_conf 799868998
No 238
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=49.18 E-value=22 Score=16.73 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 99999999889899999997999999971799948997078998773899996
Q gi|254780892|r 15 KVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVR 67 (133)
Q Consensus 15 ~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir 67 (133)
..+.++.+..||++..+..|.-|...+.+ ..|+.|+-=--.. ++.+.++
T Consensus 76 ~~l~~la~~~G~~v~i~~Ggt~~rkii~~-~~p~~IigVAC~~---dL~~gi~ 124 (158)
T pfam01976 76 GDLKELAEEYGYKVYIVPGGTFAKKIIKE-YRPKAIIGVACER---DLNEGIQ 124 (158)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEEEECHH---HHHHHHH
T ss_conf 27999999809879996482899999987-2999899992048---9999999
No 239
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=49.12 E-value=22 Score=16.73 Aligned_cols=93 Identities=10% Similarity=-0.042 Sum_probs=62.0
Q ss_pred HHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCCEEEECCCC-CC-CCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 999999988989999--99979999999717999489970789-98-773899996143488973999963899899999
Q gi|254780892|r 16 VGRHLFNDFGFMVFE--ATSVCEAREFCEKELLPNYLVIDESM-EG-VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIA 91 (133)
Q Consensus 16 ~l~~~L~~~g~~v~~--a~~g~eAl~~~~~~~~pdlii~D~~m-P~-~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~ 91 (133)
.++.-|..---.+-. .-...=..|.+.... +|-+++|+.- |+ ...++.+++.....+..|||=... +++....+
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aG-fDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ikq 84 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATAG-FDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIKQ 84 (255)
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCC-CCHHHHHH
T ss_conf 69999857996687521588579999998568-88799625326765899999998753259998664888-98899999
Q ss_pred HHHCCCCEEEECCCCHHHH
Q ss_conf 9976998899769898999
Q gi|254780892|r 92 GARAGANSFLLKPFNRETL 110 (133)
Q Consensus 92 a~~~Ga~~yl~KP~~~~~L 110 (133)
.++.||...|.-=++..+=
T Consensus 85 ~LD~GAqtlliPmV~s~eq 103 (255)
T COG3836 85 LLDIGAQTLLIPMVDTAEQ 103 (255)
T ss_pred HHCCCCCEEEEECCCCHHH
T ss_conf 9621631366403589999
No 240
>PRK13140 consensus
Probab=48.92 E-value=22 Score=16.71 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=31.2
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 73899996143488973999963899------899999997699889976989899
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVD------FEKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
+++++++|+ ..++|+++||-++. .+-..+|.++|+++.|.--+..++
T Consensus 79 ~~~~~~~r~---~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee 131 (257)
T PRK13140 79 FEQLKDIRK---EVQIPLILMGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDD 131 (257)
T ss_pred HHHHHHHHC---CCCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 999999743---68988899905599985179999999998499869835998567
No 241
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=48.55 E-value=22 Score=16.67 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=9.1
Q ss_pred HHHHHHHHCCCEEEEECC
Q ss_conf 999999988989999999
Q gi|254780892|r 16 VGRHLFNDFGFMVFEATS 33 (133)
Q Consensus 16 ~l~~~L~~~g~~v~~a~~ 33 (133)
.+++.+...||++..+.+
T Consensus 47 gie~~a~~~Gy~l~v~~s 64 (295)
T PRK10653 47 GAQKEADKLGYNLVVLDS 64 (295)
T ss_pred HHHHHHHHCCCEEEEEEC
T ss_conf 999999976998999839
No 242
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=48.28 E-value=22 Score=16.65 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHHHCCCE----EEEECC--HHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHH
Q ss_conf 999999988989----999999--79999999717999489970789987-73899996143488973999963899899
Q gi|254780892|r 16 VGRHLFNDFGFM----VFEATS--VCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEK 88 (133)
Q Consensus 16 ~l~~~L~~~g~~----v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~ 88 (133)
.+-+.....|.- ++...| -+.+++.+++ ..||+|=+ |||. ..+++++++ ....|+|.=-=-.+.++
T Consensus 81 ~~i~~Ak~~gl~tIqR~FliDS~al~~~~~~i~~-~~PD~IEi---lPG~~p~~i~~i~~---~~~~PiIAGGLI~~~ed 153 (174)
T pfam04309 81 KVIKKAKKLGLPAIQRLFLLDSIALERSIEQIEK-LEPDFIEV---LPGVMPKVIQEITE---RTNIPIIAGGLIRTEEE 153 (174)
T ss_pred HHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHH-CCCCEEEE---CCHHHHHHHHHHHH---HCCCCEEEECCCCCHHH
T ss_conf 9999999879928977643417789999999864-79899999---86669999999997---47999997678388999
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99999769988997
Q gi|254780892|r 89 MIAGARAGANSFLL 102 (133)
Q Consensus 89 ~~~a~~~Ga~~yl~ 102 (133)
..+|+++||...=+
T Consensus 154 v~~aL~aGA~aVST 167 (174)
T pfam04309 154 VREALKAGAVAVST 167 (174)
T ss_pred HHHHHHCCCEEEEC
T ss_conf 99999849969987
No 243
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=48.25 E-value=19 Score=17.10 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=39.7
Q ss_pred HHHHCCCE-EEEECCHHHHHH---HHHHCCCCCEEEECCC-CCCC--CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 99988989-999999799999---9971799948997078-9987--738999961434889739999638998999999
Q gi|254780892|r 20 LFNDFGFM-VFEATSVCEARE---FCEKELLPNYLVIDES-MEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG 92 (133)
Q Consensus 20 ~L~~~g~~-v~~a~~g~eAl~---~~~~~~~pdlii~D~~-mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a 92 (133)
.+...|.+ +.++.+|..|.+ .+.+... |+|++|.| +|+. .+-..-+-=+....+=|.--|+|-+=.=....|
T Consensus 109 ~~~~~G~~LiiTVD~Gi~a~~e~~~a~~~G~-dVIVtDHHC~~~~~lP~a~AivNP~~~~~~yP~k~LaGvGVaFkl~~A 187 (705)
T TIGR00644 109 ELKENGVSLIITVDNGISAHEEIEYAKELGI-DVIVTDHHCLPPETLPEAAAIVNPKRPDCNYPFKELAGVGVAFKLVTA 187 (705)
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9986698399982687426999999986698-199972567984899865057716758899883146788999999999
Q ss_pred HHCCCC
Q ss_conf 976998
Q gi|254780892|r 93 ARAGAN 98 (133)
Q Consensus 93 ~~~Ga~ 98 (133)
+..-..
T Consensus 188 L~~~~~ 193 (705)
T TIGR00644 188 LLEELR 193 (705)
T ss_pred HHHHCC
T ss_conf 997333
No 244
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=48.00 E-value=23 Score=16.62 Aligned_cols=90 Identities=11% Similarity=0.003 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHCC-CE------EEEECCHHHHHHHHHHCCCCCEEEECCCCCCC---CHHHHHHHHCCCCCCCEE
Q ss_conf 399899999999999889-89------99999979999999717999489970789987---738999961434889739
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFG-FM------VFEATSVCEAREFCEKELLPNYLVIDESMEGV---LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g-~~------v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~---~~l~~~ir~~~~~~~~pi 77 (133)
.|.......++++....+ .. ...+.+..+|++.+..-. +|-||+.=.-|.. .++++++.+. .+-++
T Consensus 97 ~dg~iD~~~~~~Li~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG-~~rILTSG~~~~A~~G~~~L~~L~~~---a~~~i 172 (248)
T PRK11572 97 VDGHVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLNALKNLAELG-VARILTSGQQSDAEQGLSLIMELIAQ---GDAPI 172 (248)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECHHHCCCCHHHHHHHHHHCC-CCEEECCCCCCCHHHHHHHHHHHHHH---CCCCE
T ss_conf 999849999999999748980798620221499999999999759-99898899978777889999999984---49968
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 999638998999999976998899
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
|+--+--..+...+..+.|+..|=
T Consensus 173 Im~GgGV~~~Ni~~~~~tG~~eiH 196 (248)
T PRK11572 173 IMAGAGVRAENLQKFLDAGVREVH 196 (248)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 987899899999999975977897
No 245
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=47.94 E-value=23 Score=16.62 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCCCEEEECCCCC---CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99999997179994899707899---877389999614348897399996389989999999769988997
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESME---GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP---~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.+-.+.+.+... |++++|.--. ++.+.++.+|+. ++++|||. -.-...+-....+++||+...+
T Consensus 240 ~eRa~~Lv~aGv-DvlvIDtAhGhs~~v~~~ik~ik~~--~p~v~vIa-GNVaT~~~a~~Li~aGAD~vkV 306 (499)
T PTZ00314 240 KERAAALIDAGV-DVLVLDSSQGNSIYQIDFIKWIKST--YPHLEVIA-GNVVTQDQAKNLIDAGADGIRI 306 (499)
T ss_pred HHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHH--CCCCCEEE-EEECHHHHHHHHHHCCCCEEEE
T ss_conf 999999998699-8999816887727899999998852--79884676-4331099999999749987997
No 246
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=47.58 E-value=23 Score=16.58 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=49.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCC--C----------------CCHHH
Q ss_conf 77999739989999999999988989999999799999997179994899707899--8----------------77389
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G----------------VLEFI 63 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP--~----------------~~~l~ 63 (133)
+++.||=--|..++.++. ..-.+..+.+|.-.. .+..+..||+|++|+.-+ + |+. .
T Consensus 53 ~~v~vvG~gP~l~e~~~~----~~~~~vi~AdgA~~~-l~~~gi~pDiiVTDlDgd~e~~~~~~~~g~i~VVHAHGDN-i 126 (232)
T COG1634 53 REVAVVGAGPSLEEEIKG----LSSEVVIAADGAVSA-LLERGIRPDIIVTDLDGDPEDLLSCTAKGSIVVVHAHGDN-I 126 (232)
T ss_pred CEEEEECCCCCHHHHHCC----CCCCEEEECCHHHHH-HHHCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCCC-H
T ss_conf 879997778767666334----655359955689999-9985997757970598898899875336977999946867-7
Q ss_pred HHHHH--------CCCCCCCE---EEEEECCCCHH-HHHHHHHCCCCEEE
Q ss_conf 99961--------43488973---99996389989-99999976998899
Q gi|254780892|r 64 AHVRQ--------MPLGTDVF---VYYLLMEVDFE-KMIAGARAGANSFL 101 (133)
Q Consensus 64 ~~ir~--------~~~~~~~p---ii~lT~~~~~~-~~~~a~~~Ga~~yl 101 (133)
.+++. ...++..| ++-..|.+|-+ ...-|...||....
T Consensus 127 ~~i~~~~~~~~~vigTtQ~~P~~~v~NfgGFTDGDRAa~LA~~lgA~~I~ 176 (232)
T COG1634 127 WRIPKVVPVLDRVIGTTQVRPFDRVYNFGGFTDGDRAAFLAYYLGAEKIR 176 (232)
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 77503553212252035668974412368888730999999984977699
No 247
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.56 E-value=23 Score=16.58 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=59.5
Q ss_pred CCEEEEEC--CCHHH---HHHHHHHHHHCCCEEEEECCHHHHHHHHHH----------CCCCCEEEE--CCCCC-CCCHH
Q ss_conf 97799973--99899---999999999889899999997999999971----------799948997--07899-87738
Q gi|254780892|r 1 MDSLLLVD--SSHIV---RKVGRHLFNDFGFMVFEATSVCEAREFCEK----------ELLPNYLVI--DESME-GVLEF 62 (133)
Q Consensus 1 m~~ILiVD--D~~~~---r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~----------~~~pdlii~--D~~mP-~~~~l 62 (133)
|+||-||= +++.. ..-+...|...|++|....+....+..... ...|.-+-. |+-.- ||+|.
T Consensus 1 M~kiGIi~~~~~~~a~~~a~~l~~~L~~~gi~v~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~IvlGGDGT 80 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGMLGYANPDQPVCHTGIDALVPEGFDSSMKFAIVLGGDGT 80 (305)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHH
T ss_conf 98899997389989999999999999988999999744123228787553211244111263335777339999837699
Q ss_pred -HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf -9999614348897399996389989999999769988997698989999999999999
Q gi|254780892|r 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 63 -~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
++..|.. ...++||+-+ +.|--+||+- ++++++...+.+++..
T Consensus 81 ~L~aar~~-~~~~iPilGI-------------N~G~LGFLt~-i~~~~~~~~l~~il~g 124 (305)
T PRK02649 81 VLSAARQT-APCGIPLLTI-------------NTGHLGFLTE-AYLNQLDEAIDQLLAG 124 (305)
T ss_pred HHHHHHHH-CCCCCCEEEE-------------ECCCEEEECC-CCHHHHHHHHHHHHCC
T ss_conf 99999985-3369978989-------------4486234044-7988999999999829
No 248
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=47.23 E-value=23 Score=16.55 Aligned_cols=92 Identities=11% Similarity=0.101 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCCEEEECCCCC-C------CCHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 9999999998898999--9999799999997179994899707899-8------77389999614348897399996389
Q gi|254780892|r 14 RKVGRHLFNDFGFMVF--EATSVCEAREFCEKELLPNYLVIDESME-G------VLEFIAHVRQMPLGTDVFVYYLLMEV 84 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~--~a~~g~eAl~~~~~~~~pdlii~D~~mP-~------~~~l~~~ir~~~~~~~~pii~lT~~~ 84 (133)
.....+.++..|+.+. -+.+|...++.+.. ..||.|=+|-.+= + ...+++.+-......++.+| .++-.
T Consensus 135 ~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~-l~~d~iKld~~li~~~~~~~~~~~~~~~l~~~a~~~g~~vi-aegVE 212 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKR-LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVE 212 (241)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH-CCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECC
T ss_conf 99999999970997875378998101899986-57204224799996132684558999999999998599899-97188
Q ss_pred CHHHHHHHHHCCCCE----EEECCCCH
Q ss_conf 989999999769988----99769898
Q gi|254780892|r 85 DFEKMIAGARAGANS----FLLKPFNR 107 (133)
Q Consensus 85 ~~~~~~~a~~~Ga~~----yl~KP~~~ 107 (133)
+.+....+.+.|++- |+.||...
T Consensus 213 ~~~~~~~l~~~Gi~~~QG~~~~~P~p~ 239 (241)
T smart00052 213 TPEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 199999999749999886864758999
No 249
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=46.86 E-value=24 Score=16.52 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=67.4
Q ss_pred HHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHH--HHHHHHCCCCCCCEEEEEECCCCHHHH
Q ss_conf 999999988989999--99979999999717999489970789987--738--999961434889739999638998999
Q gi|254780892|r 16 VGRHLFNDFGFMVFE--ATSVCEAREFCEKELLPNYLVIDESMEGV--LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKM 89 (133)
Q Consensus 16 ~l~~~L~~~g~~v~~--a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l--~~~ir~~~~~~~~pii~lT~~~~~~~~ 89 (133)
-..+.|-+.||.|.- -.|.--|-+. +.-. -..+|=|--|=| .|+ -..+|..-+..++|+|+=-+-+.+.+.
T Consensus 189 ~Aae~Lv~eGF~VlpY~~dDpv~akrL-ed~G--c~avMPlgsPIGSg~Gi~n~~~i~~i~e~~~vpvivDAGiG~pS~A 265 (327)
T PRK11840 189 KAAEVLVKEGFQVMVYCSDDPIAAKRL-EDAG--AVAVMPLGAPIGSGLGIQNPYTIRLIVEGAKVPVLVDAGVGTASDA 265 (327)
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHH-HHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 999999978988988716986899999-8759--8388622452347888689999999997369978995798987899
Q ss_pred HHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999769988997-----69898999999999999999
Q gi|254780892|r 90 IAGARAGANSFLL-----KPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 90 ~~a~~~Ga~~yl~-----KP~~~~~L~~~i~~~~~~~~ 122 (133)
.+||+.|++..|. +--++-.+..+++...+--+
T Consensus 266 ~~aMElG~daVL~NTAiA~a~~Pv~MA~A~~~av~AGR 303 (327)
T PRK11840 266 AVAMELGCDGVLMNTAIAEAKNPILMARAMKLAVEAGR 303 (327)
T ss_pred HHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99986366666633676726997999999999999999
No 250
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=46.86 E-value=24 Score=16.52 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=34.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8897399996389989999999769988997698989999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
...+|+|.. ..+...+ ....|.++|+.+|-+.++|..+++++.+.
T Consensus 282 a~G~PvIa~-~~gG~~e---~v~~g~tG~l~~~~~~~~la~ai~~~~~~ 326 (351)
T cd03804 282 ASGTPVIAY-GKGGALE---TVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred HCCCCEEEE-CCCCCCC---EECCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 769988982-8999755---01589978995989999999999999859
No 251
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=46.62 E-value=24 Score=16.49 Aligned_cols=36 Identities=17% Similarity=-0.019 Sum_probs=33.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 977999739989999999999988989999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~e 36 (133)
|++|-|+|=..-+...+.+.|+..|+++....+..+
T Consensus 1 M~~I~Iid~g~GNi~Sv~~al~~~g~~~~ii~~~~~ 36 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESE 36 (210)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 977999958847899999999986998799799999
No 252
>PRK05899 transketolase; Reviewed
Probab=46.53 E-value=24 Score=16.48 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=33.7
Q ss_pred EEEECCCHHHH---------HHHHHHHHHCCCEEEEECCH------HHHHHHHHHC-CCCCEEEECCCC
Q ss_conf 99973998999---------99999999889899999997------9999999717-999489970789
Q gi|254780892|r 4 LLLVDSSHIVR---------KVGRHLFNDFGFMVFEATSV------CEAREFCEKE-LLPNYLVIDESM 56 (133)
Q Consensus 4 ILiVDD~~~~r---------~~l~~~L~~~g~~v~~a~~g------~eAl~~~~~~-~~pdlii~D~~m 56 (133)
|+|+|||.... .-+...++.+||++....+| .+|++.+.+. ..|-+|++--.+
T Consensus 183 IvI~ndN~~sIdg~v~~~~~~~l~~rf~a~Gw~vi~v~DGhD~~~I~~Ai~~Ak~~~~kPtvI~v~TiK 251 (661)
T PRK05899 183 IVIYDDNRISIDGDTSGWFSEDTKKRFEAYGWHVIEVVDGHDVEAIDAAIEEAKAETDKPTLIIAKTII 251 (661)
T ss_pred EEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 999947970006640421059899999976986784379999999999999998646998689998236
No 253
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.51 E-value=24 Score=16.48 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=43.8
Q ss_pred EEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9999979999999717999489970789987-73899996143488973999963899899999997699889
Q gi|254780892|r 29 FEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF 100 (133)
Q Consensus 29 ~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~y 100 (133)
.++.+-+|+.+.+..+ +|.|.+|-.=|.. -+....+++....+ -..+-.||.-+.+...+..+.|++-+
T Consensus 188 VEv~~lee~~~a~~~g--~d~I~LDn~s~e~~~~~v~~l~~~~~~~-~v~ieaSGGI~~~ni~~ya~tGVD~I 257 (279)
T PRK08385 188 VEVESLEDALKAAKAG--ADIIMLDNMTPEEIREVIEALKELGLRE-KVKIEVSGGITPETIAEYAKLDVDVI 257 (279)
T ss_pred EEECCHHHHHHHHHCC--CCEEEECCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 9709899999999769--9999984999999999999987507689-78999978998999999985598999
No 254
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=46.02 E-value=24 Score=16.44 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 89987738999961434889739999638998999999976998899-----------7698989999999999
Q gi|254780892|r 55 SMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-----------LKPFNRETLRFAMREL 117 (133)
Q Consensus 55 ~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-----------~KP~~~~~L~~~i~~~ 117 (133)
-+||..++++.+++ ..+++-++|+..........-..|..+|. .|| +++-+..+++++
T Consensus 88 l~pGv~e~L~~L~~----~g~~~~VvTnk~~~~~~~~l~~~gl~~~F~~iv~~ddv~~~KP-~Pd~~l~a~~~l 156 (221)
T PRK13226 88 LFDGVEMMLARLEC----AGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKP-HPLPLLTAAERI 156 (221)
T ss_pred CCCCHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 45679999999997----7990898559818889999998398522330001444567788-869999999994
No 255
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=45.96 E-value=24 Score=16.43 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=44.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHHC---CCCCEEEECCCCCCCCHHHH
Q ss_conf 7999739989999999999988989--9-9999979999999717---99948997078998773899
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFM--V-FEATSVCEAREFCEKE---LLPNYLVIDESMEGVLEFIA 64 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~--v-~~a~~g~eAl~~~~~~---~~pdlii~D~~mP~~~~l~~ 64 (133)
+|.-+|=++......++.+...|+. + ....++.+.++.+..+ ..+|+|++|-.=.+-.+...
T Consensus 71 ~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDadK~~Y~~y~e 138 (204)
T pfam01596 71 KITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFAFVDADKSSYPNYYE 138 (204)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 89999804899999999999779874479998749999999984477776438998188877799999
No 256
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=45.90 E-value=25 Score=16.43 Aligned_cols=46 Identities=11% Similarity=-0.063 Sum_probs=35.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8897399996389989999999769988997698989999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
...+|+|..-..+.+.+ ..+-|-++||.+|-+.++|.+++.++++-
T Consensus 281 a~G~PvIatd~~~G~~E---iI~dg~nG~Lv~~~d~~~la~~i~~li~~ 326 (361)
T PRK09922 281 SYGIPCISSDCMSGPRD---IIKPGLNGELYTPGNIDEFVGKLNKVISG 326 (361)
T ss_pred HHCCCEEEECCCCCCHH---HHCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 95998999759999088---71589837997799999999999999848
No 257
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=45.89 E-value=25 Score=16.43 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=50.6
Q ss_pred CCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9489970-789987---738999961434889739999638998999999976998899769898999999999999999
Q gi|254780892|r 47 PNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 47 pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+.+.|+| +||=.- ..+++.+ ....+++.+|+-|.. ....-.-.-+-...|=.|+++.+.+...+..+.....
T Consensus 132 ~kv~iidevhmls~~afnallktl--eepp~~~~fi~att~--~~k~p~ti~src~~f~~~~~~~~~~~~~l~~i~~~e~ 207 (600)
T PRK09111 132 YKVYIIDEVHMLSTAAFNALLKTL--EEPPPHVKFIFATTE--IRKVPVTVLSRCQRFDLRRIEAEVLAAHLARIAEKEG 207 (600)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--HCCCCCEEEEEECCC--HHHCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 469996001105799999999876--259865499996285--3437589985441201057999999999999998607
Q ss_pred HH
Q ss_conf 99
Q gi|254780892|r 123 SK 124 (133)
Q Consensus 123 ~~ 124 (133)
..
T Consensus 208 ~~ 209 (600)
T PRK09111 208 VE 209 (600)
T ss_pred CC
T ss_conf 68
No 258
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=44.49 E-value=26 Score=16.29 Aligned_cols=44 Identities=20% Similarity=0.072 Sum_probs=32.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8897399996389989999999769988997698989999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
...+|||. |..++.. +....|.++|+..| +.++|..++.+++.-
T Consensus 321 a~G~PVVa-sd~gG~~---E~I~~g~~G~Lv~~-d~~~la~~i~~ll~d 364 (392)
T cd03805 321 YAGKPVIA-CNSGGPL---ETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HCCCCEEE-ECCCCCH---HHEECCCEEEEECC-CHHHHHHHHHHHHCC
T ss_conf 77999999-4899867---66457966999595-999999999999789
No 259
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=44.14 E-value=26 Score=16.26 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHHHCCCEEEEECCHHHH-----HHHHHHCCCCCEEEECCCC----CCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 999889899999997999-----9999717999489970789----9877389999614348897399996389989999
Q gi|254780892|r 20 LFNDFGFMVFEATSVCEA-----REFCEKELLPNYLVIDESM----EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMI 90 (133)
Q Consensus 20 ~L~~~g~~v~~a~~g~eA-----l~~~~~~~~pdlii~D~~m----P~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~ 90 (133)
.|...|+....++|+... ++.+.-..++|.|+.--.. |+-.-+...++.....+.= .+++ + +......
T Consensus 93 ~L~~~g~~l~ivTn~~~~~~~~~l~~~gl~~~Fd~iv~~ddv~~~KP~P~~~~~a~~~l~~~p~e-~l~V-G-Ds~~Di~ 169 (214)
T PRK13288 93 TLKKQGYKLGIVTTKARDTVEMGLKLTGLDKFFDVVVTLDDVEHAKPDPEPVQKALELLGAKPEE-ALMV-G-DNYHDIL 169 (214)
T ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC-EEEE-E-CCHHHHH
T ss_conf 99977992677535756999999997222144315786133445698799999999993959786-8999-6-8989999
Q ss_pred HHHHCCCCEEEEC--CCCHHHHH
Q ss_conf 9997699889976--98989999
Q gi|254780892|r 91 AGARAGANSFLLK--PFNRETLR 111 (133)
Q Consensus 91 ~a~~~Ga~~yl~K--P~~~~~L~ 111 (133)
-|.++|+.-..+. +.+.++|.
T Consensus 170 aA~~aG~~~i~v~~g~~~~~~l~ 192 (214)
T PRK13288 170 AGKNAGTKTAGVAWTIKGREYLE 192 (214)
T ss_pred HHHHCCCEEEEEECCCCCHHHHH
T ss_conf 99995995999938999876797
No 260
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=43.99 E-value=25 Score=16.36 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHH
Q ss_conf 99899999999999889-8999999979999999717999489970789987-7389999
Q gi|254780892|r 9 SSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHV 66 (133)
Q Consensus 9 D~~~~r~~l~~~L~~~g-~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~i 66 (133)
++-.+|.+.+++.++.| .+..++-=-.-|+.+......+|+|++.-..-|. .++++.+
T Consensus 192 tdgLF~~V~rEi~~~~g~ve~~d~~vDs~a~~Lv~~P~~fDVIVTtNmFGDIlSD~A~~l 251 (350)
T TIGR02088 192 TDGLFLEVCREIAKSYGEVEYEDYLVDSAAMNLVKDPEKFDVIVTTNMFGDILSDLAAAL 251 (350)
T ss_pred CCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 563159999998517996413228899999985238630676786234524188999998
No 261
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=43.15 E-value=27 Score=16.17 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHCCCCCEEEECCCCC---CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99997179994899707899---877389999614348897399996389989999999769988997
Q gi|254780892|r 38 REFCEKELLPNYLVIDESME---GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 38 l~~~~~~~~pdlii~D~~mP---~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
...+.+... |++++|.--- ...++++.+|.. ++++||| .-+-...+-....+++||+...+
T Consensus 158 a~~Lv~AGv-D~lvID~AhGhs~~~~e~ik~ik~~--~p~v~VI-aGNVaT~~~a~~Li~aGAD~VkV 221 (404)
T PRK06843 158 VEELVKAHV-DILVIDSAHGHSTRIIELVKTIKNK--YPNLDLI-AGNIVTKEAALDLINVGADCLKV 221 (404)
T ss_pred HHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHH--CCCCCEE-ECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999997699-9999968875217899999999976--7996166-30305799999999819899995
No 262
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=42.89 E-value=27 Score=16.15 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=32.1
Q ss_pred HHHHHH----HHCCCCCEEEECCCCC----CC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 999999----7179994899707899----87---7389999614348897399996389989999999
Q gi|254780892|r 36 EAREFC----EKELLPNYLVIDESME----GV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA 93 (133)
Q Consensus 36 eAl~~~----~~~~~pdlii~D~~mP----~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~ 93 (133)
++++.+ .++. +|+||+|=.+. |. .+++..++..|.. +- +++||.+-++......
T Consensus 101 ~~~~~a~~~l~~~~-~dlvVLDEi~~Al~~gll~~eevi~~L~~rp~~--~e-vVLTGR~~p~~L~e~A 165 (190)
T PRK05986 101 EGWEEAKRMLADES-YDLVVLDELTYALKYGYLDLEEVLEALNNRPGM--QH-VVITGRGAPRELIEAA 165 (190)
T ss_pred HHHHHHHHHHHCCC-CCEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCC--CE-EEEECCCCCHHHHHHC
T ss_conf 99999999985888-888953767999855995899999999828998--76-9997999999999865
No 263
>PRK08267 short chain dehydrogenase; Provisional
Probab=42.88 E-value=27 Score=16.14 Aligned_cols=81 Identities=15% Similarity=0.084 Sum_probs=49.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC---CEEEECCCCCCCC-HHHHHHHHCCCCCCCE
Q ss_conf 97799973998999999999998898999999979999999717999---4899707899877-3899996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP---NYLVIDESMEGVL-EFIAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~p---dlii~D~~mP~~~-~l~~~ir~~~~~~~~p 76 (133)
||++||-=-+.=+-..+.+.|-..|++|..+.-.++.++.+.++... ...-+|+.=++-. ..+.++-. ...-.+-
T Consensus 1 MK~vlITGassGIG~a~A~~~a~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~Dvtd~~~v~~~~~~~~~-~~~G~iD 79 (258)
T PRK08267 1 MKSIFITGAASGIGRATARLFAARGWRVGAYDINEDGLAALAAELGAERAWTGALDVTDRAAWDAALADFCA-ATGGRLD 79 (258)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCCC
T ss_conf 998999072268999999999987999999988899999999983699679999117999999999999999-9589986
Q ss_pred EEEEEC
Q ss_conf 999963
Q gi|254780892|r 77 VYYLLM 82 (133)
Q Consensus 77 ii~lT~ 82 (133)
+++-.+
T Consensus 80 iLVNNA 85 (258)
T PRK08267 80 VLFNNA 85 (258)
T ss_pred EEEECC
T ss_conf 899888
No 264
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.76 E-value=27 Score=16.13 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=27.7
Q ss_pred EECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 999979999999717999489970789987-738999961434889739999638998999999976998
Q gi|254780892|r 30 EATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGAN 98 (133)
Q Consensus 30 ~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~ 98 (133)
++.|-+|+.+.+.. . +|+|++|-.=|.. -+..+.++.. ..-+.+-.||.-+.+...+-.+.|++
T Consensus 204 Ev~sl~q~~ea~~~-g-aDiImLDNms~e~~~~av~~~~~~---~~~v~lEaSGgI~~~ni~~yA~tGVD 268 (288)
T PRK07896 204 EVDSLEQLDEVLAE-G-AELILLDNFPVWQTQEAVQRRDAR---APTVLLESSGGLTLDTAAAYAATGVD 268 (288)
T ss_pred EECCHHHHHHHHHC-C-CCEEEECCCCHHHHHHHHHHHHCC---CCCEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 97979999998746-9-999997799999999999998376---98748999889999999999965999
No 265
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=42.60 E-value=28 Score=16.12 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=55.2
Q ss_pred CCEEEEECCHHHHHHHHHHCC-CCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH--CC
Q ss_conf 989999999799999997179-99489970789987-----73899996143488973999963899899999997--69
Q gi|254780892|r 25 GFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR--AG 96 (133)
Q Consensus 25 g~~v~~a~~g~eAl~~~~~~~-~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~--~G 96 (133)
||.=.+--+..++.+.++.-. .=.+|++|+.=-|+ .+..+++..+ +.++||++=-|=++.++..++.+ .|
T Consensus 144 GW~E~s~~~~~~~~~~~~~~G~~~~ii~TdI~~DGtl~G~n~~~~~~~~~~--~~~~~viaSGGv~s~~D~~~L~~~~~G 221 (241)
T TIGR00007 144 GWKEKSEVSLEELAKRLEELGELEGIIYTDISRDGTLSGPNFELTKELVKA--LVNVPVIASGGVSSIDDLRALKEIELG 221 (241)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEECCCCCHHHHHHHH--HCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 041135627999999985158633689975200672007873288999987--358418994265788999999971598
Q ss_pred CCEEEE
Q ss_conf 988997
Q gi|254780892|r 97 ANSFLL 102 (133)
Q Consensus 97 a~~yl~ 102 (133)
+.+.+.
T Consensus 222 ~~GvIv 227 (241)
T TIGR00007 222 VYGVIV 227 (241)
T ss_pred CCEEEE
T ss_conf 327998
No 266
>PRK09482 xni exonuclease IX; Provisional
Probab=42.20 E-value=23 Score=16.56 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=26.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 9779997399899999999999889899999997999999971799948997078
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~ 55 (133)
|+++|+||.+.......- .+...+...-.......++..+.+...|+-+++=|.
T Consensus 2 m~~llLIDG~~l~~Ray~-a~p~~~~~~~~~~~~~~~l~kli~~~~P~~i~v~fD 55 (256)
T PRK09482 2 MNHLLIIDALNLIRRIHA-VQPSPNDIAACVETCQHALDKLIRHSQPTHAVAVFD 55 (256)
T ss_pred CCCEEEECCCHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 972899846289999984-377899988678999999999999719987999984
No 267
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=42.16 E-value=28 Score=16.08 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=54.7
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHC-CCC
Q ss_conf 98999999979999999717999489970789987-----738999961434889739999638998999999976-998
Q gi|254780892|r 25 GFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA-GAN 98 (133)
Q Consensus 25 g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~-Ga~ 98 (133)
||...+..+..+..+.+.....-.++++|+.--|+ .++.+++... -++|++.--+-++.++....... |+.
T Consensus 140 GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~---~~ipviaSGGv~s~~Di~~l~~~~G~~ 216 (241)
T COG0106 140 GWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEA---VDIPVIASGGVSSLDDIKALKELSGVE 216 (241)
T ss_pred CCHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH---HCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 61012567899999999857877699985144664577787999999998---276789866868799999998557972
Q ss_pred EEEE-C-----CCCHHHHHHHH
Q ss_conf 8997-6-----98989999999
Q gi|254780892|r 99 SFLL-K-----PFNRETLRFAM 114 (133)
Q Consensus 99 ~yl~-K-----P~~~~~L~~~i 114 (133)
+.+. | -|+..+....+
T Consensus 217 GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 217 GVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred EEEEEHHHHCCCCCHHHHHHHH
T ss_conf 8998668964897899999998
No 268
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822 This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=41.30 E-value=29 Score=16.00 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9877389999614348897399996389989999999769988997698989999999999999999
Q gi|254780892|r 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 57 P~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
|=|+-|+.+- .+.+|||. |..+++.++..-.++| -|.-|.+.+.+..++.+.+.-.+.
T Consensus 358 PFGLTLlEAA-----AcGLPivA-T~DGGP~dI~~~C~NG---LLvd~ld~e~i~~AL~~alsd~~Q 415 (445)
T TIGR02472 358 PFGLTLLEAA-----ACGLPIVA-TEDGGPRDIIANCRNG---LLVDVLDLEAIASALEQALSDSSQ 415 (445)
T ss_pred CCHHHHHHHH-----HCCCCEEE-CCCCCCHHHHHHCCCC---CEECCCCHHHHHHHHHHHCCCHHH
T ss_conf 3016899999-----76997210-7864866888428887---500578989999999973389066
No 269
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=41.26 E-value=29 Score=15.99 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=34.1
Q ss_pred CCCCEEEEEEC-CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 88973999963-89989999999769988997698989999999999999
Q gi|254780892|r 72 GTDVFVYYLLM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 72 ~~~~pii~lT~-~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
...+|||. |. .+... +....|.++|+.+|-+.++|..++.+++..
T Consensus 274 a~G~PvIa-s~~~gg~~---e~v~~~~~G~l~~~~d~~~la~~i~~ll~~ 319 (348)
T cd03820 274 AFGLPVIS-FDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred HCCCCEEE-ECCCCCHH---HHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 86999999-67998849---995389629998899999999999999779
No 270
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=41.22 E-value=29 Score=16.02 Aligned_cols=68 Identities=7% Similarity=-0.002 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCC---------CC-----CHHHHHHHHCCCCCCCEEEEEECCCCHH-HHHHH-HHCC
Q ss_conf 9799999997179994899707899---------87-----7389999614348897399996389989-99999-9769
Q gi|254780892|r 33 SVCEAREFCEKELLPNYLVIDESME---------GV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFE-KMIAG-ARAG 96 (133)
Q Consensus 33 ~g~eAl~~~~~~~~pdlii~D~~mP---------~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~-~~~~a-~~~G 96 (133)
+..+.-+++..+.. .+.++|+.=| |. ..+...+-+....++.|||+.-..+... ...+. .+.|
T Consensus 2 d~a~l~~w~~~~~r-~~~llDVR~~~E~~~GHIpGA~~iP~~~L~~~~~~~~~~k~~~ivl~C~~G~RS~~AA~~L~~~G 80 (95)
T cd01534 2 GAAELARWAAEGDR-TVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAPVRGARIVLADDDGVRADMTASWLAQMG 80 (95)
T ss_pred CHHHHHHHHHCCCC-CEEEEECCCHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 88999999868997-37999799889997388877788889998777654246689839998599987999999999869
Q ss_pred CCEEE
Q ss_conf 98899
Q gi|254780892|r 97 ANSFL 101 (133)
Q Consensus 97 a~~yl 101 (133)
-+-|.
T Consensus 81 ~~v~~ 85 (95)
T cd01534 81 WEVYV 85 (95)
T ss_pred CCEEE
T ss_conf 97699
No 271
>PRK13172 consensus
Probab=41.13 E-value=29 Score=15.98 Aligned_cols=36 Identities=22% Similarity=0.051 Sum_probs=33.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 977999739989999999999988989999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~e 36 (133)
|++|-|+|=-.-+...+.+.++..|+++....+..+
T Consensus 1 M~~I~IIDyG~GNi~Sv~~al~~lg~~~~i~~~~~~ 36 (213)
T PRK13172 1 MSSVSIVDYGVGNLLSVARAFQYFDASVNLVSTPEE 36 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 987999978942999999999986998899779999
No 272
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=41.07 E-value=29 Score=15.97 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred EECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE--CCCCHHHHHHH
Q ss_conf 9707899877389999614348897399996389989999999769988997--69898999999
Q gi|254780892|r 51 VIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL--KPFNRETLRFA 113 (133)
Q Consensus 51 i~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~--KP~~~~~L~~~ 113 (133)
+.|--=|+--+.++++|+. .+.++|+||.+...-..-|.+.|.++|.. +|=+.-+....
T Consensus 534 ~~D~~R~~a~~aI~~L~~~----Gi~~~mLTGDn~~~A~~iA~~lGId~v~A~llPedK~~~V~~ 594 (713)
T COG2217 534 LADELRPDAKEAIAALKAL----GIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDKAEIVRE 594 (713)
T ss_pred ECCCCCHHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHCCHHHEECCCCCHHHHHHHHH
T ss_conf 7078883499999999987----993999859998999999997392623507991889999999
No 273
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=40.84 E-value=29 Score=15.95 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=48.3
Q ss_pred CCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9489970-789987---738999961434889739999638998999999976998899769898999999999999999
Q gi|254780892|r 47 PNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 47 pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+.+.|+| .||=.. ..+++.+. ...+++.+|+.|.. ....-.-.-+-...|-.|+++.+.+...+..++....
T Consensus 120 ~kvyiidEvhmls~~afnalLKtlE--ePp~hv~filaTT~--~~k~p~TilSRC~~f~~~~~~~~~i~~~l~~i~~~e~ 195 (643)
T PRK07994 120 FKVYLIDEVHMLSRHSFNALLKTLE--EPPAHVKFLLATTD--PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 (643)
T ss_pred EEEEEEECHHHCCHHHHHHHHHHHC--CCCHHCEEEEECCC--HHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 3699972210158999999998623--78610089986077--4548478997776500166999999999999999759
No 274
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=40.70 E-value=28 Score=16.07 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=7.2
Q ss_pred HHCCCCEEEECC
Q ss_conf 976998899769
Q gi|254780892|r 93 ARAGANSFLLKP 104 (133)
Q Consensus 93 ~~~Ga~~yl~KP 104 (133)
.+.||+=.++||
T Consensus 235 ~~EGAD~lMVKP 246 (320)
T cd04824 235 VSEGADMIMVKP 246 (320)
T ss_pred HHHCCCEEEECC
T ss_conf 773999799527
No 275
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=40.58 E-value=30 Score=15.93 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHCCCCCEEEECCCCC----CC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 97179994899707899----87---7389999614348897399996389989999999
Q gi|254780892|r 41 CEKELLPNYLVIDESME----GV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA 93 (133)
Q Consensus 41 ~~~~~~pdlii~D~~mP----~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~ 93 (133)
+.++. +|++++|=-+. |. .+++..++..|.. +- +++||.+.++......
T Consensus 91 l~~~~-~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~--~e-vVlTGr~~p~~L~e~A 146 (159)
T cd00561 91 IASGE-YDLVILDEINYALGYGLLDVEEVVDLLKAKPED--LE-LVLTGRNAPKELIEAA 146 (159)
T ss_pred HHCCC-CCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCC--CE-EEEECCCCCHHHHHHC
T ss_conf 86889-899973668999985991799999999848999--78-9996999999999857
No 276
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=40.42 E-value=30 Score=15.91 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=29.3
Q ss_pred CCCCCEEEECCCCC----CC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 79994899707899----87---7389999614348897399996389989999999
Q gi|254780892|r 44 ELLPNYLVIDESME----GV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA 93 (133)
Q Consensus 44 ~~~pdlii~D~~mP----~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~ 93 (133)
...+|+|++|=-+. |. .+++..++..|.. +- +++|+..-++......
T Consensus 94 ~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~--~e-vVlTGr~~p~~L~e~A 147 (172)
T pfam02572 94 SGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEG--QH-VVLTGRGAPPELIELA 147 (172)
T ss_pred CCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCC--CE-EEEECCCCCHHHHHHH
T ss_conf 889899973557999755996899999999828998--77-9998999999999970
No 277
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=40.41 E-value=30 Score=15.91 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCEEEEECCCHHHHHHHHH-HHHHCCCEEEEECCH
Q ss_conf 9779997399899999999-999889899999997
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRH-LFNDFGFMVFEATSV 34 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~-~L~~~g~~v~~a~~g 34 (133)
||||||.=..=.+...+.. +|+.-|++|......
T Consensus 1 MKkILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~d~~ 35 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLTKRILETTDWEVYGMDMQ 35 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 98899975743899999999998289789999799
No 278
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=40.00 E-value=30 Score=15.87 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=44.7
Q ss_pred HHHHHCCC-EEEEECCHHHHHHHH---HHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99998898-999999979999999---71799948997078998773899996143488973999963899899999997
Q gi|254780892|r 19 HLFNDFGF-MVFEATSVCEAREFC---EKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94 (133)
Q Consensus 19 ~~L~~~g~-~v~~a~~g~eAl~~~---~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~ 94 (133)
++|+..+. -|....+.++|.+.. .++.. .++=+-++-|+..+.+++++++ .+++. |-.-+-.+.+...++.+
T Consensus 3 ~~L~~~~iipV~r~~~~~~a~~~~~al~~~Gi-~~iEiTl~t~~a~~~I~~l~~~--~p~~~-iGaGTV~~~e~~~~a~~ 78 (196)
T pfam01081 3 SILREAKIVPVIVIKDKEDALPLAEALAAGGI-RVLEVTLRTPCALDAIRLLRKN--RPDAL-VGAGTVLNAQQLAEAAE 78 (196)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHH--CCCCE-EEEEECCCHHHHHHHHH
T ss_conf 78966997999977999999999999998799-8899947982799999999964--99967-99983768999999997
Q ss_pred CCCCEEEECCCCHHHHHH
Q ss_conf 699889976989899999
Q gi|254780892|r 95 AGANSFLLKPFNRETLRF 112 (133)
Q Consensus 95 ~Ga~~yl~KP~~~~~L~~ 112 (133)
+|| +|+.-|....++..
T Consensus 79 aGA-~FivSP~~~~~v~~ 95 (196)
T pfam01081 79 AGA-QFVVSPGLTADLLK 95 (196)
T ss_pred CCC-CEEECCCCHHHHHH
T ss_conf 499-99997876399999
No 279
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.89 E-value=30 Score=15.86 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHCCC-EEEEECCHHHHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHH
Q ss_conf 99999999998898-9999999799999997---1799948997078998773899996143488973999963899899
Q gi|254780892|r 13 VRKVGRHLFNDFGF-MVFEATSVCEAREFCE---KELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEK 88 (133)
Q Consensus 13 ~r~~l~~~L~~~g~-~v~~a~~g~eAl~~~~---~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~ 88 (133)
.+.-++++|...+. -|....+.++|.+.++ .+.. .++=+-++-|+..+.++.++++ ++++. |-.-+-.+.+.
T Consensus 4 ~~~~i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi-~~iEiTl~tp~a~~~I~~l~~~--~p~~~-vGaGTV~~~e~ 79 (212)
T PRK05718 4 WKTQIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGL-PVLEVTLRTPAALEAIRAIRKE--VPEAL-IGAGTVLNPEQ 79 (212)
T ss_pred HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHH--CCCCE-EEEEEECCHHH
T ss_conf 46369999976987999974899999999999998799-7899957896199999999975--89817-96533134889
Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 9999976998899769898999999
Q gi|254780892|r 89 MIAGARAGANSFLLKPFNRETLRFA 113 (133)
Q Consensus 89 ~~~a~~~Ga~~yl~KP~~~~~L~~~ 113 (133)
..++.++|| +|++-|....++...
T Consensus 80 ~~~a~~aGA-~FiVSP~~~~~v~~~ 103 (212)
T PRK05718 80 LAQAIEAGA-QFIVSPGLTPPLLKA 103 (212)
T ss_pred HHHHHHCCC-CEEECCCCCHHHHHH
T ss_conf 999998499-899848998999999
No 280
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=39.73 E-value=31 Score=15.85 Aligned_cols=107 Identities=16% Similarity=-0.004 Sum_probs=51.5
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHHHHC-C-CC--------------CEEEEC---CCCCC
Q ss_conf 97399899999999999889899999--------9979999999717-9-99--------------489970---78998
Q gi|254780892|r 6 LVDSSHIVRKVGRHLFNDFGFMVFEA--------TSVCEAREFCEKE-L-LP--------------NYLVID---ESMEG 58 (133)
Q Consensus 6 iVDD~~~~r~~l~~~L~~~g~~v~~a--------~~g~eAl~~~~~~-~-~p--------------dlii~D---~~mP~ 58 (133)
+||..+.....+...+...|+..... .+..+.++.+... . .+ .-..-+ .-+||
T Consensus 12 LvDs~~~~~~a~~~~~~~~G~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG 91 (220)
T TIGR03351 12 TVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEAYDDGPPVALPG 91 (220)
T ss_pred HHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf 77589999999999999878898989999983599899999999876499989999999999999999986189806711
Q ss_pred CCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC------------CCEE-EECCCCHHHHHHHHHHH
Q ss_conf 77389999614348897399996389989999999769------------9889-97698989999999999
Q gi|254780892|r 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG------------ANSF-LLKPFNRETLRFAMREL 117 (133)
Q Consensus 59 ~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G------------a~~y-l~KP~~~~~L~~~i~~~ 117 (133)
..+++..+++ ..+++-+.|+.+........-..| +++. -.|| +++-+..+++++
T Consensus 92 ~~elL~~L~~----~gi~~av~T~~~~~~~~~~l~~~g~~~~~~fd~vv~~~dv~~~KP-~Pd~~l~a~~~l 158 (220)
T TIGR03351 92 AEEAFRSLRS----SGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRP-APDLILRAMELT 158 (220)
T ss_pred HHHHHHHHHH----CCCCEEEECCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 9999999998----799776635997799999999827640432240456343566798-789999999995
No 281
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=39.31 E-value=31 Score=15.81 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=37.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 77999739989999999999988989-99-9999799999997179994899707
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFM-VF-EATSVCEAREFCEKELLPNYLVIDE 54 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~-v~-~a~~g~eAl~~~~~~~~pdlii~D~ 54 (133)
++|.|||=|.-..+.+.+..+..|++ +. ...+-..++..-.. ..+|+.++|-
T Consensus 176 k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~-~kFDvfiTDP 229 (354)
T COG1568 176 KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK-RKFDVFITDP 229 (354)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHH-HHCCEEECCC
T ss_conf 33799831589999999999984833155403051045839888-5077643596
No 282
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=39.16 E-value=31 Score=15.80 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=12.4
Q ss_pred EEEEECCC-HHHHHHHHHHHHHCCCE
Q ss_conf 79997399-89999999999988989
Q gi|254780892|r 3 SLLLVDSS-HIVRKVGRHLFNDFGFM 27 (133)
Q Consensus 3 ~ILiVDD~-~~~r~~l~~~L~~~g~~ 27 (133)
+|.+|+-+ +-|-....+...++|++
T Consensus 6 ~iVLVep~~~gNIG~vARaMKNfGl~ 31 (242)
T COG0565 6 RIVLVEPSHPGNIGSVARAMKNFGLS 31 (242)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 79997588875279999999867966
No 283
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=39.16 E-value=31 Score=15.79 Aligned_cols=84 Identities=10% Similarity=0.053 Sum_probs=46.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC------CCHHHHHHHHCCCCCCCEE
Q ss_conf 9997399899999999999889899999997999999971799948997078998------7738999961434889739
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG------VLEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~------~~~l~~~ir~~~~~~~~pi 77 (133)
|+|+|--..+-..+.+.|+..|+++....+.... +.... ..||-|++-= =|+ ...+.+++. ..++|+
T Consensus 1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~~-~~~~~-~~~dgvils~-GP~~~~~~~~~~~~~~i~----~~~~Pi 73 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPL-EEIKL-KNPKGIILSG-GPSSVYEEDAPRVDPEIF----ELGVPV 73 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHH-CCCCEEEECC-CCCCCCCCCCCHHHHHHH----HCCCCE
T ss_conf 7999998638999999999779949999699998-99973-4989899899-999855579833309998----479999
Q ss_pred EEEECCCCHHHHHHHHHCCCC
Q ss_conf 999638998999999976998
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGAN 98 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~ 98 (133)
+-+- .....-+...|+.
T Consensus 74 lGIC----lG~Qll~~a~Gg~ 90 (181)
T cd01742 74 LGIC----YGMQLIAKALGGK 90 (181)
T ss_pred EEEH----HHHHHHHHHCCCC
T ss_conf 9985----9999999875976
No 284
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=39.16 E-value=31 Score=15.79 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEE-EEC
Q ss_conf 99999997179994899707899877-3899996143488973999-963
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYY-LLM 82 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~-lT~ 82 (133)
..+++..++... ++|+++++-|||. .-...+...-....+|++. +.+
T Consensus 19 ~r~l~~A~~~~a-~~ivl~idTpGG~v~~~~~I~~~I~~~~~pvv~~V~~ 67 (178)
T cd07021 19 ERALKEAKEEGA-DAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVND 67 (178)
T ss_pred HHHHHHHHHCCC-CEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999996899-7899999799986899999999998489999999999
No 285
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.97 E-value=32 Score=15.78 Aligned_cols=39 Identities=5% Similarity=-0.095 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCCEEEEC
Q ss_conf 9999999998898999999979------999999717999489970
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSVC------EAREFCEKELLPNYLVID 53 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g~------eAl~~~~~~~~pdlii~D 53 (133)
.+.+.+.++..||++..+.+.. +.++.+.+.. +|.|++-
T Consensus 18 ~~gie~~a~~~G~~~~i~~s~~d~~~q~~~i~~li~~~-vDgiIi~ 62 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKK-VDAIVLS 62 (267)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 99999999974999999839999999999999999749-9999990
No 286
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=38.69 E-value=32 Score=15.75 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=38.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 77999739989999999999988989999-99979999999717999489970
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFE-ATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~-a~~g~eAl~~~~~~~~pdlii~D 53 (133)
++|.|||=|.-....+.+.....|+.+.+ ..+-...+.--..+. +|++++|
T Consensus 68 ~~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~-FD~f~TD 119 (243)
T pfam01861 68 KRIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHK-FDVFITD 119 (243)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCC-CCEEECC
T ss_conf 548999675899999999999749971688741014899999616-7989718
No 287
>pfam00201 UDPGT UDP-glucoronosyl and UDP-glucosyl transferase.
Probab=38.51 E-value=32 Score=15.73 Aligned_cols=58 Identities=16% Similarity=-0.030 Sum_probs=24.1
Q ss_pred CCCCEEEEEECCCCHH-HHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8897399996389989-9999997699889976-98989999999999999999999987
Q gi|254780892|r 72 GTDVFVYYLLMEVDFE-KMIAGARAGANSFLLK-PFNRETLRFAMRELPQMQKSKDENQF 129 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~-~~~~a~~~Ga~~yl~K-P~~~~~L~~~i~~~~~~~~~~~~~~~ 129 (133)
...+|+|.+-=.+|.. ...++.+.|+--.+.| -++.+.|..+|++++...++++.-+.
T Consensus 359 ~~GVP~v~iP~f~DQ~~Na~~~~~~G~g~~l~~~~lt~~~l~~ai~~vl~n~~Y~~na~~ 418 (501)
T pfam00201 359 CHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSEDLLNALKTVINDPSYKENIMR 418 (501)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 859898971563446999999997797899632119999999999999709889999999
No 288
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters .; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm.
Probab=38.46 E-value=32 Score=15.73 Aligned_cols=103 Identities=10% Similarity=0.109 Sum_probs=60.4
Q ss_pred CEEEEECC----CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC-CEEEECCCCCC--------CCHH----HH
Q ss_conf 77999739----98999999999998898999999979999999717999-48997078998--------7738----99
Q gi|254780892|r 2 DSLLLVDS----SHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEG--------VLEF----IA 64 (133)
Q Consensus 2 ~~ILiVDD----~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~p-dlii~D~~mP~--------~~~l----~~ 64 (133)
.+|+||+| |+.-++++...+..+|+.+ .+.|-+.++..+.+..+- .=|++=..-|. |..+ .-
T Consensus 27 ~~iiv~~D~va~D~v~~~L~~~~a~~yG~~v-~~~s~~K~i~~~H~a~~~~~~i~l~f~~P~dv~~Lv~~Gv~i~~vNvG 105 (152)
T TIGR00854 27 NLIIVVNDDVANDEVRQTLMEIVAPEYGVKV-RFVSLEKVIKVIHKAAYEDQKIFLLFKTPADVLTLVEGGVPIKTVNVG 105 (152)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEE-EEEEHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEEC
T ss_conf 4789960611289789999987422019579-998651467661898866857999973927998998748623034325
Q ss_pred HHH-HCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC-CCC
Q ss_conf 996-143488973999963899899999997699889976-989
Q gi|254780892|r 65 HVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK-PFN 106 (133)
Q Consensus 65 ~ir-~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~K-P~~ 106 (133)
-++ +..+-+=+.-+.++. .|-.....--+.|+.=||.. |-+
T Consensus 106 nM~f~~GkkQi~k~Vsvd~-qDi~af~~L~~~GV~~~~~~vpsd 148 (152)
T TIGR00854 106 NMHFENGKKQITKKVSVDE-QDIKAFRELKKKGVKLFLRDVPSD 148 (152)
T ss_pred CCCCCCCCEEEEEEEECCH-HHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7122576564301786267-889999888746958986336887
No 289
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=38.33 E-value=32 Score=15.72 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=33.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 4889739999638998999999976998899769898999999999999
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
....+|||. |..+... +....|-++|+.+|-+.++|..++.+++.
T Consensus 296 ma~G~PvI~-t~~gg~~---e~i~~~~~G~l~~~~d~~~l~~~i~~l~~ 340 (374)
T cd03801 296 MAAGLPVVA-SDVGGIP---EVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred HHCCCCEEE-CCCCCHH---HHHCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 976998999-7899758---88518971899789999999999999977
No 290
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=37.99 E-value=33 Score=15.68 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=48.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999-979999999717999489970789987-738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEAT-SVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~-~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~l 80 (133)
.+++||.|+...+. +...|+.+.... +-.+.|+.+.-+. .+.+++...=+.. .-.+..+|.. .+..+|+..
T Consensus 22 ~v~vId~d~~~~~~----~~~~~~~vi~GD~~~~~~L~~a~i~~-a~~vi~~~~~d~~n~~~~~~~r~~--~~~~~iiar 94 (115)
T pfam02254 22 PVVVIDKDPERVEE----LREEGVPVVVGDATDEEVLEEAGIED-ADAVVAATGDDEANILIVLLAREL--NPAKKIIAR 94 (115)
T ss_pred CEEEEECCHHHHHH----HHHCCCEEEEEECCCHHHHHHHCCCC-CCEEEEECCCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 99999998799877----88669869999568866787619202-879999629849999999999997--899809999
Q ss_pred ECCCCHHHHHHHHHCCCCEEE
Q ss_conf 638998999999976998899
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl 101 (133)
+. +.++.....++||+..+
T Consensus 95 ~~--~~~~~~~l~~~Gad~vi 113 (115)
T pfam02254 95 AN--DPEHAELLRRLGADEVI 113 (115)
T ss_pred EC--CHHHHHHHHHCCCCEEE
T ss_conf 87--89999999976989997
No 291
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=37.72 E-value=33 Score=15.66 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=5.0
Q ss_pred EECCCCHHHHH
Q ss_conf 97698989999
Q gi|254780892|r 101 LLKPFNRETLR 111 (133)
Q Consensus 101 l~KP~~~~~L~ 111 (133)
-.||++.+.+.
T Consensus 497 ~vkPlD~~~l~ 507 (581)
T PRK12315 497 FITGLDEELLE 507 (581)
T ss_pred CCCCCCHHHHH
T ss_conf 24887999999
No 292
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=37.47 E-value=33 Score=15.63 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=43.7
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCC-HHHHHHHHCCCCCCCEEEEE
Q ss_conf 997399899999999999889899999997999999971799948997078--99877-38999961434889739999
Q gi|254780892|r 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES--MEGVL-EFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 5 LiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~--mP~~~-~l~~~ir~~~~~~~~pii~l 80 (133)
||||--..+-..+.+.|++.|+.+........+.+.... ..||.|++-=- -|.-. .....++.. ....+||+-+
T Consensus 1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~d~iilspGpg~p~~~~~~~~~i~~~-~~~~~PiLGI 77 (187)
T pfam00117 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILEL-LNPDGIIISPGPGSPGDAGGAIEAIKEL-RENKIPILGI 77 (187)
T ss_pred CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH-CCCCEEEECCCCCCHHHCCCHHHHHHHH-HHCCCCEEEE
T ss_conf 989378638999999998689979999899986999852-5999899919986110134589999999-9779989999
No 293
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=37.31 E-value=33 Score=15.62 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=49.2
Q ss_pred CCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9489970-789987---738999961434889739999638998999999976998899769898999999999999999
Q gi|254780892|r 47 PNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 47 pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+.+.|+| +||=.. ..+++.+ .....++.+|+.|.. ....-.-.-+-...|-.|+++.+.+...+..++....
T Consensus 120 yKvyiiDEvHmls~~afnAlLKtl--EEPP~hv~FilaTT~--~~kip~TilSRc~~f~l~~~~~~~i~~~l~~i~~~E~ 195 (717)
T PRK08853 120 FKVYLIDEVHMLSRHSFNALLKTL--EEPPEYVKFLLATTD--PQKLPVTILSRCLQFHLKPISVDQIHQQLDFVLDKEQ 195 (717)
T ss_pred EEEEEEECHHHCCHHHHHHHHHHH--CCCCCCEEEEEECCC--HHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 479998305443899999998760--378756489984387--3437388987654423268999999999999999759
Q ss_pred H
Q ss_conf 9
Q gi|254780892|r 123 S 123 (133)
Q Consensus 123 ~ 123 (133)
.
T Consensus 196 i 196 (717)
T PRK08853 196 V 196 (717)
T ss_pred C
T ss_conf 8
No 294
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=37.18 E-value=23 Score=16.58 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=10.9
Q ss_pred CEEEEECCCHHHHHHHHHHHH
Q ss_conf 779997399899999999999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFN 22 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~ 22 (133)
+|||||||=..++..+....+
T Consensus 88 kkVLIVDDI~DTG~Tl~~a~~ 108 (192)
T COG2236 88 KKVLIVDDIVDTGETLELALE 108 (192)
T ss_pred CEEEEEECCCCCHHHHHHHHH
T ss_conf 858998233376176999999
No 295
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=36.94 E-value=34 Score=15.58 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCCEE--------EEECCHHHHHHHHHHCCCCCEEEECCCCC-C--C--CHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 99999999889899--------99999799999997179994899707899-8--7--7389999614348897399996
Q gi|254780892|r 15 KVGRHLFNDFGFMV--------FEATSVCEAREFCEKELLPNYLVIDESME-G--V--LEFIAHVRQMPLGTDVFVYYLL 81 (133)
Q Consensus 15 ~~l~~~L~~~g~~v--------~~a~~g~eAl~~~~~~~~pdlii~D~~mP-~--~--~~l~~~ir~~~~~~~~pii~lT 81 (133)
....++-+..|+.- ..|..|.=+||+.++.+..|.|+. | | | .|+...+|++ .|++.||-+-
T Consensus 109 ~~A~~~~~~~g~~fvHpF~D~~vmAGQGTigLEi~ed~pd~D~viV----PVGGGGLISGv~~a~K~~--~P~VkvIGV~ 182 (381)
T TIGR01127 109 ALAEELAEEEGRVFVHPFDDEYVMAGQGTIGLEIMEDLPDVDTVIV----PVGGGGLISGVASAAKKL--NPEVKVIGVE 182 (381)
T ss_pred HHHHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHCCCCCCEEEE----EECCCCHHHHHHHHHHHH--CCCCEEEEEE
T ss_conf 9999999860987874058877861674899999964798137998----417871287999999872--8994799860
Q ss_pred CCCCHHHHHHHHHCC
Q ss_conf 389989999999769
Q gi|254780892|r 82 MEVDFEKMIAGARAG 96 (133)
Q Consensus 82 ~~~~~~~~~~a~~~G 96 (133)
++..+.. .+.++.|
T Consensus 183 aE~ap~m-~~Sl~~G 196 (381)
T TIGR01127 183 AEGAPSM-VESLREG 196 (381)
T ss_pred CCCCHHH-HHHHHCC
T ss_conf 2785589-9998519
No 296
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=36.86 E-value=34 Score=15.58 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHCCCCCEEEECCCCC----CC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 97179994899707899----87---7389999614348897399996389989999999
Q gi|254780892|r 41 CEKELLPNYLVIDESME----GV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA 93 (133)
Q Consensus 41 ~~~~~~pdlii~D~~mP----~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~ 93 (133)
+.++. +|+||+|=-.. |. .+++..++..|.. +- +++||.+-++......
T Consensus 111 l~~g~-~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~--~e-vVLTGR~ap~eLie~A 166 (178)
T PRK07414 111 VDEGK-YELVVLDELSLAIQFGLIPETEVLEFLEKRPSH--VD-VILTGPEMPESLLAIA 166 (178)
T ss_pred HHCCC-CCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCC--CE-EEEECCCCCHHHHHHH
T ss_conf 86889-888997036899876992599999999818999--88-9996999999999985
No 297
>PRK13124 consensus
Probab=36.80 E-value=34 Score=15.57 Aligned_cols=30 Identities=13% Similarity=-0.024 Sum_probs=13.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 8897399996389989999999769988997
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
..++|+.+==|-.+.++. +.+..+|++.+.
T Consensus 193 ~t~~Pv~vGFGI~~~e~v-~~~~~~ADGvIV 222 (257)
T PRK13124 193 YSNVPVAVGFGISTPEQV-QKMKEIADGVVV 222 (257)
T ss_pred CCCCCEEEEECCCCHHHH-HHHHHHCCEEEE
T ss_conf 179983898446999999-999801999998
No 298
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=36.72 E-value=34 Score=15.56 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEE-EEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9999997179994899707899877389999614348897399-9963899899999997699889976
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVY-YLLMEVDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii-~lT~~~~~~~~~~a~~~Ga~~yl~K 103 (133)
..+..+.++..||+|++=.-+|...- +..+|......++|++ ++|-+..- -..-+..|++.|++-
T Consensus 79 ~~l~~~i~~~~PD~IV~Thp~~~~~~-l~~lk~~~~~~~~p~~tViTD~~~~--H~~W~~~~~D~y~Va 144 (169)
T pfam06925 79 RELAALLKEFQPDIIISTHPLPAAVP-LSVLKSKGLLKRVLVVTVVTDFRTC--HPFWLHPEIDRYYVP 144 (169)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHH-HHHHHHCCCCCCCCEEEEECCCCCC--CCCCCCCCCCEEEEC
T ss_conf 99999999849399999976266789-9999983878899789998988666--578168999989979
No 299
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=36.70 E-value=34 Score=15.56 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHCC-CEEEEECCHHHHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHCCCCC-CCEEEEEECC-CCHHHHHHHH
Q ss_conf 999889-89999999799999997---1799948997078998773899996143488-9739999638-9989999999
Q gi|254780892|r 20 LFNDFG-FMVFEATSVCEAREFCE---KELLPNYLVIDESMEGVLEFIAHVRQMPLGT-DVFVYYLLME-VDFEKMIAGA 93 (133)
Q Consensus 20 ~L~~~g-~~v~~a~~g~eAl~~~~---~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~-~~pii~lT~~-~~~~~~~~a~ 93 (133)
.|+... .=|...++-++|+++.+ .+.. .++=+=|+-|...|.++.||+. .+ + +++=.|- -+.++..+|.
T Consensus 4 ~L~~~~ivPVi~~~~~~~A~~lA~aL~egG~-~~~EvTlRT~~A~~aI~~l~~~--~P~~--~~iGAGTVL~~~Q~~~A~ 78 (205)
T TIGR01182 4 LLREAKIVPVIRIDDVEDALPLAKALIEGGL-RVLEVTLRTPVALEAIRALRKE--VPKD--ALIGAGTVLNPEQLRQAV 78 (205)
T ss_pred HHHHCCEEEEEEECCHHHHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHHHH--CCCC--CEECCCCCCCHHHHHHHH
T ss_conf 3556680178872678777899999986798-0898851472168999999972--8233--487167648989999999
Q ss_pred HCCCCEEEECC-CCHHHHHHH
Q ss_conf 76998899769-898999999
Q gi|254780892|r 94 RAGANSFLLKP-FNRETLRFA 113 (133)
Q Consensus 94 ~~Ga~~yl~KP-~~~~~L~~~ 113 (133)
++|| +|+.-| ++++-+..+
T Consensus 79 ~AGA-~F~vSPG~~p~l~~~~ 98 (205)
T TIGR01182 79 AAGA-QFIVSPGLTPELAKHA 98 (205)
T ss_pred HCCC-CEEECCCCCHHHHHHH
T ss_conf 7089-5787697888999998
No 300
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.66 E-value=34 Score=15.56 Aligned_cols=100 Identities=17% Similarity=0.065 Sum_probs=56.0
Q ss_pred CEEEEECC--CHH---HHHHHHHHHHHCCCEEEEECCHHHHHHHHHH---------------CCCCCEEEECCCCCCCCH
Q ss_conf 77999739--989---9999999999889899999997999999971---------------799948997078998773
Q gi|254780892|r 2 DSLLLVDS--SHI---VRKVGRHLFNDFGFMVFEATSVCEAREFCEK---------------ELLPNYLVIDESMEGVLE 61 (133)
Q Consensus 2 ~~ILiVDD--~~~---~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~---------------~~~pdlii~D~~mP~~~~ 61 (133)
++|+||=- ++. ...-+.+.|...|++|....+.......-.. ....|+|++ =||+|
T Consensus 5 R~V~IV~k~~~~~a~~~a~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----lGGDG 80 (303)
T PRK03372 5 RTVLLVAHTGRDEATESARRVVKQLGDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLV----LGGDG 80 (303)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE----ECCCH
T ss_conf 88999970899899999999999999788989997040100244455556542234532233578558999----77878
Q ss_pred H-HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8-9999614348897399996389989999999769988997698989999999999999
Q gi|254780892|r 62 F-IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 62 l-~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
. ++..|.. ...++||+-+ ..|--+||+. +.++++...+.++++.
T Consensus 81 T~L~aar~~-~~~~iPilGi-------------N~G~lGFLt~-~~~~~~~~~l~~i~~g 125 (303)
T PRK03372 81 TFLRAAELA-RNADVPVLGV-------------NLGHVGFLAE-AEREDLDEAVERVVDR 125 (303)
T ss_pred HHHHHHHHH-CCCCCCEEEE-------------ECCCCEEECC-CCHHHHHHHHHHHHCC
T ss_conf 999999984-4479988987-------------2598213124-6988999999999808
No 301
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254; InterPro: IPR011951 This family consists of uncharacterised proteobacterial and Gram-positive bacterial sequences including YjjG from Escherichia coli and YfnB from Bacillus subtilis..
Probab=36.34 E-value=35 Score=15.53 Aligned_cols=85 Identities=9% Similarity=0.016 Sum_probs=39.4
Q ss_pred HHHHHCCCEEEEECCHHHHHHHHHH-----CCCCCEEEEC----CCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHH
Q ss_conf 9999889899999997999999971-----7999489970----789987738999961434889739999638998999
Q gi|254780892|r 19 HLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVID----ESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKM 89 (133)
Q Consensus 19 ~~L~~~g~~v~~a~~g~eAl~~~~~-----~~~pdlii~D----~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~ 89 (133)
..|+...+++...+||-.-++..+- .+.+|-|++. +.=|+--=|.-.+.+.+..+...++++ |.+-..+.
T Consensus 113 ~~L~~~d~~l~ivtNG~~~~Q~~rl~~~gL~~Ff~~v~~SEd~G~~KP~~~iF~~aLer~~~~~k~~~L~v-GD~~~aDi 191 (233)
T TIGR02254 113 EALQKKDLRLYIVTNGVREVQEKRLRKSGLAPFFDQVLVSEDAGIEKPDKKIFDYALERMGKLKKEEVLMV-GDSLEADI 191 (233)
T ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHEEECHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEE-ECCCHHHH
T ss_conf 98700771378887770667778876347721051444022214558885677899871788872316786-07804578
Q ss_pred HHHHHCCCCEEEECC
Q ss_conf 999976998899769
Q gi|254780892|r 90 IAGARAGANSFLLKP 104 (133)
Q Consensus 90 ~~a~~~Ga~~yl~KP 104 (133)
.=|..+|.+-...-|
T Consensus 192 ~Ga~naGl~~vw~n~ 206 (233)
T TIGR02254 192 KGARNAGLDTVWLNP 206 (233)
T ss_pred HHHHHHCEEEEEECC
T ss_conf 766661400355177
No 302
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.34 E-value=35 Score=15.53 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=33.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 88973999963899899999997699889976989899999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
...+|||...-.+..+.. ..-|-++|+.+|-+.++|..++.+++...
T Consensus 287 a~G~PVVat~~gg~~~~i---~~~~~~G~l~~~~d~~~l~~~i~~ll~~~ 333 (357)
T cd03795 287 AFGKPVISTEIGTGGSYV---NLHGVTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred HCCCCEEEECCCCCHHHH---EECCCEEEEECCCCHHHHHHHHHHHHCCH
T ss_conf 879989993599981560---55695799978999999999999997799
No 303
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=36.31 E-value=35 Score=15.52 Aligned_cols=39 Identities=5% Similarity=0.021 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCEEEE
Q ss_conf 9999999999889899999997------999999971799948997
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVFEATSV------CEAREFCEKELLPNYLVI 52 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~~a~~g------~eAl~~~~~~~~pdlii~ 52 (133)
....+...+...||.+..+.+. .+.++.+.+.. +|-+|+
T Consensus 77 ~~~~i~~~~~~~gy~~~l~~~~~~~~~~~~~l~~l~~~~-vdGiIi 121 (335)
T PRK10703 77 IIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKR-VDGLLV 121 (335)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 433699999973997999927898699999999999558-877999
No 304
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.26 E-value=35 Score=15.52 Aligned_cols=24 Identities=8% Similarity=-0.140 Sum_probs=11.1
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCE
Q ss_conf 7399996389989999999769988
Q gi|254780892|r 75 VFVYYLLMEVDFEKMIAGARAGANS 99 (133)
Q Consensus 75 ~pii~lT~~~~~~~~~~a~~~Ga~~ 99 (133)
-|+. +++.+......+.++.|-..
T Consensus 218 ~~~~-v~aGDGs~aa~~~Ir~g~~q 241 (280)
T cd06315 218 DPRN-ISAGDGSAAAFQRIRSGLFQ 241 (280)
T ss_pred CCEE-EEECCCCHHHHHHHHCCCCE
T ss_conf 9648-98067999999999839915
No 305
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=36.06 E-value=35 Score=15.50 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=4.5
Q ss_pred CHHHHHHHHC
Q ss_conf 7389999614
Q gi|254780892|r 60 LEFIAHVRQM 69 (133)
Q Consensus 60 ~~l~~~ir~~ 69 (133)
.+.++.+|..
T Consensus 128 ~~ai~~l~~~ 137 (200)
T PRK00455 128 LEAVEAIRAA 137 (200)
T ss_pred HHHHHHHHHC
T ss_conf 9999999987
No 306
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=35.99 E-value=35 Score=15.49 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=24.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 7999739989999999999988989999999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATS 33 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~ 33 (133)
+|-+-.|+..+..-+...|+.|||.|.+-..
T Consensus 59 ti~l~~D~S~F~~ALEaaLkgWGYaVvtd~k 89 (144)
T PRK13835 59 TIKLKKDTSPFGQALEAALKGWGYAVVTDQK 89 (144)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 3898327878899999997307459975475
No 307
>PRK13174 consensus
Probab=35.80 E-value=35 Score=15.47 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=31.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 97799973998999999999998898999999979999
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR 38 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl 38 (133)
||+|-|+|=-.-+...+.+.|+..|++.....+..+-+
T Consensus 1 Mk~I~IiDyG~gNi~Sv~~al~~~g~~~~~i~~~~~~i 38 (212)
T PRK13174 1 MQTVAVIDYGMGNLHSVAKALEHVGAGRVLVTSDAAVI 38 (212)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf 98899995881079999999997499879983898999
No 308
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=35.77 E-value=35 Score=15.47 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=13.9
Q ss_pred EEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 999999979999999717999489970
Q gi|254780892|r 27 MVFEATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 27 ~v~~a~~g~eAl~~~~~~~~pdlii~D 53 (133)
..+.|.|-.+|++.+.++.=||.||+.
T Consensus 4 k~f~a~~~~eAl~~ir~eLG~DAvILs 30 (282)
T TIGR03499 4 KRFVAPTMREALAKVKEELGPDAVILS 30 (282)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 899829999999999999789949996
No 309
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=35.36 E-value=36 Score=15.43 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=43.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHH--CCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 7999739989999999999988989--9999997999999971--79994899707899877389999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFM--VFEATSVCEAREFCEK--ELLPNYLVIDESMEGVLEFIAHV 66 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~--v~~a~~g~eAl~~~~~--~~~pdlii~D~~mP~~~~l~~~i 66 (133)
+|.-+|=|+...+..++.++..|+. +..... .+|++.+.+ ...+|+|++|-.=++-..+....
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~ 152 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERA 152 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHCCCCCCCEEEEECCHHHCHHHHHHH
T ss_conf 699970798999999999997597652898835-7479999733478856899837843599999999
No 310
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=35.35 E-value=36 Score=15.43 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCCC-----HHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 9799999997179994899707899877-----38999961434889739999638
Q gi|254780892|r 33 SVCEAREFCEKELLPNYLVIDESMEGVL-----EFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 33 ~g~eAl~~~~~~~~pdlii~D~~mP~~~-----~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
+-.++++.+.+......|+++++-|||. ++...+++... .-||+...+.
T Consensus 29 ~i~~~l~~A~~d~~vkaivL~InSPGG~~~~s~~i~~~I~~~~~--~KPVva~~~~ 82 (214)
T cd07022 29 GIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARA--GKPIVAFVNG 82 (214)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEEEECC
T ss_conf 99999999950999758999997989768999999999998608--9989999888
No 311
>PRK09449 nucleotidase; Provisional
Probab=35.04 E-value=36 Score=15.40 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=9.0
Q ss_pred CCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 38998999999976998899769
Q gi|254780892|r 82 MEVDFEKMIAGARAGANSFLLKP 104 (133)
Q Consensus 82 ~~~~~~~~~~a~~~Ga~~yl~KP 104 (133)
|.+-..+..-|.++|.......|
T Consensus 175 GDs~~~Di~gA~~aG~~tvw~N~ 197 (225)
T PRK09449 175 GDNLHSDILGGINAGIDTCWLNA 197 (225)
T ss_pred CCCCCHHHHHHHHCCCEEEEECC
T ss_conf 68730467989987995999899
No 312
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=35.02 E-value=36 Score=15.40 Aligned_cols=70 Identities=16% Similarity=0.073 Sum_probs=51.3
Q ss_pred ECCHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99979999999717999489970789987-----73899996143488973999963899899999997699889976
Q gi|254780892|r 31 ATSVCEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 31 a~~g~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~K 103 (133)
..++.+.+..+.....|++|++|+.-=|. .|+++.... ...-|+++--+-...++...+...|..+.|.-
T Consensus 136 ~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~---~s~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 136 LEDFLETVKDLNYRRDPGLIVLDIGAVGTKSGPDYELLTKVLE---LSEHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH---HCCCCEEECCCCCCHHHHHHHHCCCCCEEEEH
T ss_conf 1048999998752578884999755433466999999999987---31375344487585777899861798546543
No 313
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=34.89 E-value=37 Score=15.39 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHHCCC-EEEEECCHHHHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99998898-9999999799999997---1799948997078998773899996143488973999963899899999997
Q gi|254780892|r 19 HLFNDFGF-MVFEATSVCEAREFCE---KELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94 (133)
Q Consensus 19 ~~L~~~g~-~v~~a~~g~eAl~~~~---~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~ 94 (133)
+.|...+. -|.-..+.++|++..+ ++.. ..+=+-++-|+..+.++.+++. +++--.|-.-+--+.++..++.+
T Consensus 5 ~~~~~~plvaIlR~~~~~~a~~~~~al~~~Gi-~~iEVTl~tp~a~~~I~~l~~~--~~~~~~iGAGTVlt~e~~~~ai~ 81 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGF-RAIEIPLNSPDPFDSIAALVKA--LGDDALIGAGTVLSPEQVDRLAD 81 (206)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHH
T ss_conf 99985997999958999999999999998699-8899917997699999999996--79865998620467999999998
Q ss_pred CCCCEEEECC-CCHHHHHH
Q ss_conf 6998899769-89899999
Q gi|254780892|r 95 AGANSFLLKP-FNRETLRF 112 (133)
Q Consensus 95 ~Ga~~yl~KP-~~~~~L~~ 112 (133)
+|| +|+.-| ++++.+..
T Consensus 82 aGA-~FiVSP~~~~~vi~~ 99 (206)
T PRK09140 82 AGG-RLIVTPNIDPEVIRR 99 (206)
T ss_pred CCC-CEEECCCCCHHHHHH
T ss_conf 599-999999998999999
No 314
>TIGR01744 XPRTase xanthine phosphoribosyltransferase; InterPro: IPR010079 This entry represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; Bacillus subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.; GO: 0016763 transferase activity transferring pentosyl groups, 0043101 purine salvage, 0046110 xanthine metabolic process.
Probab=34.61 E-value=33 Score=15.66 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=26.7
Q ss_pred CEEEEECCCHHH---HHHHHHHHHHCCCE-------EE-EECCHHHHHHHH
Q ss_conf 779997399899---99999999988989-------99-999979999999
Q gi|254780892|r 2 DSLLLVDSSHIV---RKVGRHLFNDFGFM-------VF-EATSVCEAREFC 41 (133)
Q Consensus 2 ~~ILiVDD~~~~---r~~l~~~L~~~g~~-------v~-~a~~g~eAl~~~ 41 (133)
.||||+||=..+ .+.|..+.+..|.. ++ ++.+|.+.|.-+
T Consensus 118 D~vl~IDDFLA~G~a~~gL~~i~~qA~A~~~G~G~viEK~Fq~Gr~~L~~~ 168 (191)
T TIGR01744 118 DRVLIIDDFLANGDAARGLVDIAEQAGAKIAGIGIVIEKSFQNGRQELEEL 168 (191)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHC
T ss_conf 889999513466616788999998619958854479981457846999848
No 315
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=34.58 E-value=37 Score=15.36 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHCCCCCEEEECCCCC----CC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHC
Q ss_conf 9999997179994899707899----87---738999961434889739999638998999999976
Q gi|254780892|r 36 EAREFCEKELLPNYLVIDESME----GV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA 95 (133)
Q Consensus 36 eAl~~~~~~~~pdlii~D~~mP----~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~ 95 (133)
.|.+.+..+ .+|+||+|=... |. .|+...++..|.. +-| ++|+...+.......+.
T Consensus 113 ~a~~~l~~~-~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~--~~v-IiTGr~ap~~lie~ADl 175 (198)
T COG2109 113 HAKEALADG-KYDLVILDELNYALRYGLLPLEEVVALLKARPEH--THV-IITGRGAPPELIELADL 175 (198)
T ss_pred HHHHHHHCC-CCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCC--CEE-EEECCCCCHHHHHHHHH
T ss_conf 999997388-8788997212688873888799999999559987--679-99799999899998777
No 316
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=34.50 E-value=37 Score=15.35 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHCCCC---CEEEECCCCCC---CCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEE
Q ss_conf 9979999999717999---48997078998---77389999614348897399996389989999999769-988997
Q gi|254780892|r 32 TSVCEAREFCEKELLP---NYLVIDESMEG---VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLL 102 (133)
Q Consensus 32 ~~g~eAl~~~~~~~~p---dlii~D~~mP~---~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~G-a~~yl~ 102 (133)
.+|.+|+++..+-..- .++|.-++--| |++ +..+|.....-++|||.=.|-+..++..+|+..| |+.-|.
T Consensus 210 ~tg~da~~Wa~~v~~lGAGEILLtsmD~DG~k~GYD-l~L~~~v~e~v~iPVIASGGAG~~eHf~EAF~~gkADAaLa 286 (312)
T TIGR00735 210 VTGLDAVEWAKEVEKLGAGEILLTSMDRDGTKSGYD-LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALA 286 (312)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCHHHHHH
T ss_conf 020679999999874588566530337467878776-89999898416656575078798530032221000345344
No 317
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=34.21 E-value=38 Score=15.32 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=33.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 889739999638998999999976998899769898999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
...+|||. |..+.. .+..+.|-++|+.+|-+.++|..++..++.
T Consensus 288 a~G~PvI~-s~~gg~---~Eiv~~~~~G~l~~~~d~~~la~~i~~l~~ 331 (364)
T cd03814 288 ASGLPVVA-PDAGGP---ADIVTDGENGLLVEPGDAEAFAAALAALLA 331 (364)
T ss_pred HCCCCEEE-CCCCCH---HHHHCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 83998999-589974---888317982899799999999999999976
No 318
>PRK13134 consensus
Probab=33.90 E-value=38 Score=15.29 Aligned_cols=34 Identities=9% Similarity=-0.109 Sum_probs=22.5
Q ss_pred CCCCCCEEEEEECCCC------HHHHHHHHHCCCCEEEEC
Q ss_conf 3488973999963899------899999997699889976
Q gi|254780892|r 70 PLGTDVFVYYLLMEVD------FEKMIAGARAGANSFLLK 103 (133)
Q Consensus 70 ~~~~~~pii~lT~~~~------~~~~~~a~~~Ga~~yl~K 103 (133)
....++|+|+||-++. .+-...|.++|+++.|.-
T Consensus 91 ~~~~~~pivlMtY~N~i~~yG~e~F~~~~~~aGvdGvIip 130 (257)
T PRK13134 91 KGRLRAGLVLMGYLNPFMQYGFERFVRDAADAGVAGCIIP 130 (257)
T ss_pred HCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 4468999899853459997468999999986798759946
No 319
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=33.84 E-value=38 Score=15.28 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=34.9
Q ss_pred EEECCHHHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 99999799999997179994899707899877-3899996143488973999963899899999997699889
Q gi|254780892|r 29 FEATSVCEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF 100 (133)
Q Consensus 29 ~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~y 100 (133)
.++.|-+||.+.+.. . +|.|.+|-.=|... +....++. -..+-.||.-+.+...+-...|++-.
T Consensus 187 VEv~s~~e~~~a~~~-g-adiI~LDn~spe~~~~~v~~~~~------~v~ieaSGgIn~~ni~~ya~~GvD~I 251 (268)
T cd01572 187 VEVETLEQLKEALEA-G-ADIIMLDNMSPEELREAVALLKG------RVLLEASGGITLENIRAYAETGVDYI 251 (268)
T ss_pred EEECCHHHHHHHHHC-C-CCEEEECCCCHHHHHHHHHHHCC------CEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 994889999999975-9-99999779999999999998669------56999989998999999997599999
No 320
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.76 E-value=38 Score=15.28 Aligned_cols=95 Identities=9% Similarity=0.153 Sum_probs=54.7
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC-C-CCCCHHHHHHHHC----CCCCC-CEEEEEECCCCH
Q ss_conf 999999999889899999997999999971799948997078-9-9877389999614----34889-739999638998
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES-M-EGVLEFIAHVRQM----PLGTD-VFVYYLLMEVDF 86 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~-m-P~~~~l~~~ir~~----~~~~~-~pii~lT~~~~~ 86 (133)
.+.|+.+-+-.|.-+..+.+..+.-+.+.+... |+|++|=- + |.-..-+.+++.. ..... -..+++|+.+..
T Consensus 268 vEQLktYa~Il~iPv~vv~~~~el~~al~~~~~-DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~ 346 (432)
T PRK12724 268 IEQLKRYADTMGMPFYPVKDIKKFKETLARDGS-ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH
T ss_conf 999999999859945995189999999985699-9999929998978999999999999863667885179999788998
Q ss_pred HHHHHHHH----CCCCEEEECCCCHHH
Q ss_conf 99999997----699889976989899
Q gi|254780892|r 87 EKMIAGAR----AGANSFLLKPFNRET 109 (133)
Q Consensus 87 ~~~~~a~~----~Ga~~yl~KP~~~~~ 109 (133)
.+.....+ .+.+.+|.--++...
T Consensus 347 ~dl~~ii~~f~~l~~~~lIfTKLDET~ 373 (432)
T PRK12724 347 HHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 999999998426999849997122779
No 321
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=33.65 E-value=38 Score=15.26 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHCCC-----EEEEECCHHHHHHHHHHCCCCCEEEECCCCC-CCCHHHHHHHHCCCCCCCEE-----
Q ss_conf 998999999999998898-----9999999799999997179994899707899-87738999961434889739-----
Q gi|254780892|r 9 SSHIVRKVGRHLFNDFGF-----MVFEATSVCEAREFCEKELLPNYLVIDESME-GVLEFIAHVRQMPLGTDVFV----- 77 (133)
Q Consensus 9 D~~~~r~~l~~~L~~~g~-----~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP-~~~~l~~~ir~~~~~~~~pi----- 77 (133)
.|...-..+++.|...|+ +..+..+-++..+++....+.|+|| | |+.+|.+.++++ ..+||
T Consensus 154 Sn~ai~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~iI-----PRGg~~Li~~v~~~---a~vPVi~~~~ 225 (417)
T COG0014 154 SNAAIVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVI-----PRGGAGLIRRVVEN---ATVPVIEHGV 225 (417)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCEEEEE-----CCCCHHHHHHHHHC---CCCCEEECCC
T ss_conf 479999999999987199988821116788799999982067636997-----38957999999847---9587885475
Q ss_pred ----EEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ----999638998999999976998899769
Q gi|254780892|r 78 ----YYLLMEVDFEKMIAGARAGANSFLLKP 104 (133)
Q Consensus 78 ----i~lT~~~~~~~~~~a~~~Ga~~yl~KP 104 (133)
+++....+.+...+.. .+.-..+|
T Consensus 226 G~CHiyvd~~ADld~A~~ii---~nAKtqrP 253 (417)
T COG0014 226 GNCHIYVDESADLDKALKII---VNAKTQRP 253 (417)
T ss_pred CEEEEEECCCCCHHHHHHHH---HCCCCCCC
T ss_conf 03799962657999999999---70667898
No 322
>PRK00654 glgA glycogen synthase; Provisional
Probab=33.19 E-value=39 Score=15.22 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHH----HHHHHHHCCCCC-EE-E--------------EC-CCCCCCC---HHHHHHH
Q ss_conf 9999999999988989999999799----999997179994-89-9--------------70-7899877---3899996
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVFEATSVCE----AREFCEKELLPN-YL-V--------------ID-ESMEGVL---EFIAHVR 67 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~~a~~g~e----Al~~~~~~~~pd-li-i--------------~D-~~mP~~~---~l~~~ir 67 (133)
.....+..+++. +.+...+.+|.. .+..+.. ..|+ +. + +| .-||..+ |+ .++.
T Consensus 310 ll~~a~~~~~~~-~~~~vi~G~G~~~~~~~l~~l~~-~~~~~~~~~~gf~e~l~~~iya~aD~~lmPS~~EP~Gl-~qle 386 (476)
T PRK00654 310 LVLEALDEILEQ-GGQLVLLGTGDPELEEAFRALAA-RYPGRVGVQIGYDEALAHRIYAGADFFLMPSRFEPCGL-TQLY 386 (476)
T ss_pred HHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHHHCCEEECCCCCCCCCH-HHHH
T ss_conf 999999999970-99899994597899999999998-77988899957886898999872887864561136776-8999
Q ss_pred HCCCCCCCEEEEEECCCCHHHHHH---HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 143488973999963899899999---99769988997698989999999999999999
Q gi|254780892|r 68 QMPLGTDVFVYYLLMEVDFEKMIA---GARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 68 ~~~~~~~~pii~lT~~~~~~~~~~---a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
++. .-.+||+-=| +.-.+.+. -...++++|+..|.++.+|..++++++...+.
T Consensus 387 Am~-~Gt~Pvv~~t--GGL~dtV~d~~~~~~~~tGf~f~~~~~~~l~~ai~~al~~~~~ 442 (476)
T PRK00654 387 ALR-YGTLPIVRRT--GGLADTVIDYDPEDGGATGFVFDDFNAEDLLTALRRALELYRQ 442 (476)
T ss_pred HHH-CCCCCEEECC--CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 987-6998588179--9975514566667787634873799999999999999988569
No 323
>pfam02662 FlpD Methyl-viologen-reducing hydrogenase, delta subunit. This family consist of methyl-viologen-reducing hydrogenase, delta subunit / heterodisulphide reductase. No specific functions have been assigned to this subunit. The aligned region corresponds to almost the entire delta chain sequence and contains 4 conserved cysteine residues. However, in two Archaeoglobus sequences this region corresponds to only the C-terminus of these proteins.
Probab=33.09 E-value=39 Score=15.21 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCCCCCCHHHHHHHHC-CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 07899877389999614-3488973999963899899999997699889976
Q gi|254780892|r 53 DESMEGVLEFIAHVRQM-PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 53 D~~mP~~~~l~~~ir~~-~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~K 103 (133)
.|--....++...-|.. |..-.+-=+..|+.-++....+|++.||++.++-
T Consensus 8 ~~cay~aaD~aG~~r~~yp~~vriIrvpCsGrv~~~~il~A~~~GADGV~V~ 59 (124)
T pfam02662 8 NWCAYAAADLAGTSRLQYPPNVRIIRVPCTGRVNPSLILKALEKGADGVLVL 59 (124)
T ss_pred CCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 8887487888515258899975899705788649999999998699979994
No 324
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.02 E-value=39 Score=15.20 Aligned_cols=68 Identities=10% Similarity=-0.055 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC----H-HHHHHHHCCCCCCCEE-EEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99999997179994899707899877----3-8999961434889739-99963899899999997699889976989
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGVL----E-FIAHVRQMPLGTDVFV-YYLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~~----~-l~~~ir~~~~~~~~pi-i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
.+.++.+......+-|++.++-|||. + ..++++.+.... || +++.+..... --.+..+|+..+.-|.+
T Consensus 86 ~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~--PV~v~v~~~AASG--GY~IA~aAd~I~a~p~s 159 (317)
T COG0616 86 EEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK--PVVVSVGGYAASG--GYYIALAADKIVADPSS 159 (317)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEECCCCCCH--HHHHHHCCCEEEECCCC
T ss_conf 99999985089987389999894984689999999999875329--8999988732028--99998407879877986
No 325
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=32.86 E-value=40 Score=15.19 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 99999999998898999-999979999999717999489970-789987---7389999614348897399996389989
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
....+......+|.++. ++++.+|.-..+.. . +++|=+. -++-.. .+.+.++... ...+..+|.=||-...+
T Consensus 148 ~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~-~-a~iIGINnRnL~t~~vd~~~~~~L~~~-ip~~~~~VsESGI~~~~ 224 (261)
T PRK00278 148 QLKELLDLAHELGLDVLVEVHDEEELERALKL-G-APLIGINNRNLKTFEVDLDTTERLAPL-IPKDRLLVSESGIFTPE 224 (261)
T ss_pred HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC-C-CCEEEEECCCCHHCEECHHHHHHHHHH-CCCCCEEEECCCCCCHH
T ss_conf 99999999998299079776899999999847-9-988987467711200378999999964-89998899799999999
Q ss_pred HHHHHHHCCCCEEEEC
Q ss_conf 9999997699889976
Q gi|254780892|r 88 KMIAGARAGANSFLLK 103 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl~K 103 (133)
+..+..+.|++.||.=
T Consensus 225 d~~~l~~~G~davLIG 240 (261)
T PRK00278 225 DLKRLAKAGADAFLVG 240 (261)
T ss_pred HHHHHHHCCCCEEEEC
T ss_conf 9999997799999989
No 326
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=32.85 E-value=40 Score=15.19 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHC---CCCEEEE----
Q ss_conf 9999999717999489970789987-----738999961434889739999638998999999976---9988997----
Q gi|254780892|r 35 CEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA---GANSFLL---- 102 (133)
Q Consensus 35 ~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~---Ga~~yl~---- 102 (133)
.+.++.+.....=.++++|+.--|+ .++++.+++. ..+|++.--+-+..++..+..+. |+++.+.
T Consensus 148 ~~~i~~~~~~G~~eii~tdI~~DGt~~G~d~~l~~~i~~~---~~ipviasGGv~s~~Di~~L~~~~~~gv~gviiG~Al 224 (241)
T PRK00748 148 EDLAKRFEDAGVAAIIYTDISRDGTLSGPNVELTRELAAA---TPIPVIASGGVSSLDDIRALKALGPEGVEGVIVGKAL 224 (241)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHHH
T ss_conf 9999999855875699988705685476899999999986---8998999889999999999986031792489987898
Q ss_pred --CCCCHHHHHHHHH
Q ss_conf --6989899999999
Q gi|254780892|r 103 --KPFNRETLRFAMR 115 (133)
Q Consensus 103 --KP~~~~~L~~~i~ 115 (133)
.-++.++...+++
T Consensus 225 y~g~i~l~eal~~~~ 239 (241)
T PRK00748 225 YEGKFDLAEALACWQ 239 (241)
T ss_pred HCCCCCHHHHHHHHH
T ss_conf 779989999999865
No 327
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=32.84 E-value=40 Score=15.18 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHCCCCCCCEEEE-EECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 979999999717999489970789987-----73899996143488973999-963899899999997699889976989
Q gi|254780892|r 33 SVCEAREFCEKELLPNYLVIDESMEGV-----LEFIAHVRQMPLGTDVFVYY-LLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 33 ~g~eAl~~~~~~~~pdlii~D~~mP~~-----~~l~~~ir~~~~~~~~pii~-lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
+-.+.++.+......-.|+++++=||| -|+-.+|++..+....||++ +++.....-.- ...|++..+.-|-+
T Consensus 30 ~~~k~~~~~~~~~~~ka~~l~i~SPGG~V~~S~Eiy~~l~~~~k~~kkPVv~~~g~~aaSGGYY--ia~aa~~I~A~~~t 107 (224)
T TIGR00706 30 DVLKKIKRIKDDKSIKALVLRIDSPGGTVVASEEIYEKLKKLKKEAKKPVVASMGGVAASGGYY--IAMAADEIVANPGT 107 (224)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH--HHHCCCEEEECCCC
T ss_conf 7999988774089700699986379997522689999998634530885899836832267999--98138824634774
No 328
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=32.39 E-value=40 Score=15.14 Aligned_cols=80 Identities=16% Similarity=0.010 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 9989999999999988989999999799999997179994899707899877-389999614348897399996389989
Q gi|254780892|r 9 SSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 9 D~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
.+....+.+...|...|+.+....+.......... ..++-+++=+..+|.. +..+.++. -+..+.|+|.+|+..+..
T Consensus 23 ~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~d~~i~iS~sg~~~~~~~~~~~-ak~~g~~ii~IT~~~~s~ 100 (139)
T cd05013 23 SSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAAN-LTPGDVVIAISFSGETKETVEAAEI-AKERGAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHH-HHHCCCEEEEEECCCCCH
T ss_conf 15999999999972589827987962778888745-9999999997686363789999999-998699799997999997
Q ss_pred HHH
Q ss_conf 999
Q gi|254780892|r 88 KMI 90 (133)
Q Consensus 88 ~~~ 90 (133)
...
T Consensus 101 l~~ 103 (139)
T cd05013 101 LAK 103 (139)
T ss_pred HHH
T ss_conf 799
No 329
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=32.24 E-value=41 Score=15.12 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=61.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEEE--CCHHHHHHHHHHCCCCCE-EEECCCCCCC-CHH--HHHHHHCCCCCC
Q ss_conf 7999739989999999999988989--9999--997999999971799948-9970789987-738--999961434889
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFM--VFEA--TSVCEAREFCEKELLPNY-LVIDESMEGV-LEF--IAHVRQMPLGTD 74 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~--v~~a--~~g~eAl~~~~~~~~pdl-ii~D~~mP~~-~~l--~~~ir~~~~~~~ 74 (133)
++++|=|-+ .+..+++.....|.. |... -+.++-.+.+.. . |+ ++-....|+| .|. ...+..+ ...
T Consensus 221 ~l~ivG~Gp-~~~~l~~~~~~l~l~~~V~f~G~~~~~~v~~~l~~-a--dv~v~PS~~~~~g~~Eg~~~~~lEAm--A~G 294 (367)
T cd05844 221 RLVIIGDGP-LLAALEALARALGLGGRVTFLGAQPHAEVRELMRR-A--RIFLQPSVTAPSGDAEGLPVVLLEAQ--ASG 294 (367)
T ss_pred EEEEEECCC-CHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH-C--CEEEEEEEECCCCCCCCCCHHHHHHH--HCC
T ss_conf 999998883-78999999997098763787788981889999985-7--87996002037788567637999999--849
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 7399996389989999999769988997698989999999999999
Q gi|254780892|r 75 VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 75 ~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
+|||. |..+... +....|-++|+..|-+.+.|..++.+++..
T Consensus 295 ~PVVa-t~~ggi~---e~V~~g~~G~lv~~~d~~~La~ai~~Ll~d 336 (367)
T cd05844 295 VPVVA-TRHGGIP---EAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred CCEEE-ECCCCCH---HHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 97899-2799868---772079968997899999999999999849
No 330
>PRK13228 consensus
Probab=32.14 E-value=41 Score=15.11 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=7.9
Q ss_pred ECCCHHHHHHHHHHHHHCCC
Q ss_conf 73998999999999998898
Q gi|254780892|r 7 VDSSHIVRKVGRHLFNDFGF 26 (133)
Q Consensus 7 VDD~~~~r~~l~~~L~~~g~ 26 (133)
+|..+.....+...++..|+
T Consensus 20 vDs~~~~~~a~~~~~~~~g~ 39 (232)
T PRK13228 20 VDTAPDLAEAANAMLEELGM 39 (232)
T ss_pred HHCHHHHHHHHHHHHHHCCC
T ss_conf 60999999999999998799
No 331
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=32.10 E-value=41 Score=15.11 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHH-------HHHHCCCCCEEEECCC--CCCCCHHHHHHHHCC--CCCCCEEEEE
Q ss_conf 9999999999988989999999799999-------9971799948997078--998773899996143--4889739999
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVFEATSVCEARE-------FCEKELLPNYLVIDES--MEGVLEFIAHVRQMP--LGTDVFVYYL 80 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~~a~~g~eAl~-------~~~~~~~pdlii~D~~--mP~~~~l~~~ir~~~--~~~~~pii~l 80 (133)
--.+.|+.+.+..|..+..+.++.+..+ ....+. .|+|++|-- .|.-.....+++... ..++-.++++
T Consensus 42 gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl 120 (173)
T cd03115 42 AAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREEN-FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVV 120 (173)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 79999999999749859922775587999999999987568-99899978887879999999999998644897215742
Q ss_pred ECCCCHHHH--HHHHH--CCCCEEEECCCCH
Q ss_conf 638998999--99997--6998899769898
Q gi|254780892|r 81 LMEVDFEKM--IAGAR--AGANSFLLKPFNR 107 (133)
Q Consensus 81 T~~~~~~~~--~~a~~--~Ga~~yl~KP~~~ 107 (133)
++....+.. .+.+. .|.+..+.--++.
T Consensus 121 ~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDe 151 (173)
T cd03115 121 DAMTGQDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 4655065899999987427997899971438
No 332
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=31.67 E-value=41 Score=15.07 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=36.4
Q ss_pred CHHHH---HHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 98999---99999999889899999997------9999999717999489970789987738999961434889739999
Q gi|254780892|r 10 SHIVR---KVGRHLFNDFGFMVFEATSV------CEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 10 ~~~~r---~~l~~~L~~~g~~v~~a~~g------~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~l 80 (133)
|+... ..+...++..||.+..+.+. .+.++.+.+.. .|-+|+--.+|...++...+.. ..+|+|++
T Consensus 73 n~~~~~l~~~i~~~~~~~gy~~li~~s~~~~~~e~~~~~~l~~~~-vdgiIv~~~~~~~~~~~~~l~~----~~iPvV~i 147 (330)
T PRK11303 73 NTSYARIAKLLEQQARQRGYQLLIACSDDQPDNEMQCAEHLLQRQ-VDALIVATSLPPEHPFYQRLQN----DGFPIIAL 147 (330)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHH----CCCCEEEE
T ss_conf 315678889999999966987999947999899999999999748-9989994688886299999984----69978997
Q ss_pred E
Q ss_conf 6
Q gi|254780892|r 81 L 81 (133)
Q Consensus 81 T 81 (133)
.
T Consensus 148 ~ 148 (330)
T PRK11303 148 D 148 (330)
T ss_pred C
T ss_conf 2
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.50 E-value=42 Score=15.05 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHC--CCCCCCEE-EEEECCCCH
Q ss_conf 99999999999889899999997999999971799948997078--99877389999614--34889739-999638998
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES--MEGVLEFIAHVRQM--PLGTDVFV-YYLLMEVDF 86 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~--mP~~~~l~~~ir~~--~~~~~~pi-i~lT~~~~~ 86 (133)
--.+.|+.+..-.|.-+..+.++.+.-..+.+....|+|++|-- .|.-.+...+++.. ...++..+ +++++....
T Consensus 220 gAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~ 299 (388)
T PRK12723 220 GAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
T ss_conf 89999999999978806985788999999997249999999589988568999999999997418984599998798999
Q ss_pred HHHHHHHH----CCCCEEEECCCCHH
Q ss_conf 99999997----69988997698989
Q gi|254780892|r 87 EKMIAGAR----AGANSFLLKPFNRE 108 (133)
Q Consensus 87 ~~~~~a~~----~Ga~~yl~KP~~~~ 108 (133)
.+..+.++ .|.+.+|.--++..
T Consensus 300 ~d~~~i~~~f~~~~~~~~I~TKlDEt 325 (388)
T PRK12723 300 SDIKEIFHQFSPFSYKTVIFTKLDET 325 (388)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99999999842799984999832278
No 334
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.41 E-value=42 Score=15.04 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCC-CCC
Q ss_conf 99999998898999999979999999717999489970789-987
Q gi|254780892|r 16 VGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM-EGV 59 (133)
Q Consensus 16 ~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~m-P~~ 59 (133)
++++-|...|.. ..+..+||+.+..+.+-++++--.++ ||.
T Consensus 43 ~I~~kl~~~g~~---i~~p~eaL~~L~~~G~~~V~VQslhii~G~ 84 (127)
T cd03412 43 MIRKKLKKRGIE---VDTPEEALAKLAADGYTEVIVQSLHIIPGE 84 (127)
T ss_pred HHHHHHHHCCCC---CCCHHHHHHHHHHCCCCEEEEEECCEECCH
T ss_conf 999999986999---999999999999879988999446366758
No 335
>TIGR00407 proA gamma-glutamyl phosphate reductase; InterPro: IPR000965 Gamma-glutamyl phosphate reductase (1.2.1.41 from EC) (GPR) is the enzyme that catalyzes the second step in the biosynthesis of proline from glutamate, the NADP-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. In bacteria (gene proA) and yeast (gene PRO2), GPR is a monofunctional protein, while in plants and mammals, it is a bifunctional enzyme (P5CS) that consists of two domains, an N-terminal glutamate 5-kinase domain (2.7.2.11 from EC) and a C-terminal GPR domain. ; GO: 0004350 glutamate-5-semialdehyde dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=31.17 E-value=42 Score=15.02 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHH----CCCE---EEEEC--CHHHHHHHHHHCCCCCEEEECCCCC-CCCHHHHHHHHCCCCCCCEEE
Q ss_conf 8999999999998----8989---99999--9799999997179994899707899-877389999614348897399
Q gi|254780892|r 11 HIVRKVGRHLFND----FGFM---VFEAT--SVCEAREFCEKELLPNYLVIDESME-GVLEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 11 ~~~r~~l~~~L~~----~g~~---v~~a~--~g~eAl~~~~~~~~pdlii~D~~mP-~~~~l~~~ir~~~~~~~~pii 78 (133)
...-+++...|.. .|.- |..-. +=++.-+++..+.+.|+| .| |+.+|.+.+++ ...+||+
T Consensus 146 ~~l~~Vi~~AL~~fqse~glP~~AVqli~~~~R~~v~eLL~ld~Y~Dl~-----iPRGg~~L~~~~~~---~s~iPVl 215 (415)
T TIGR00407 146 KALVEVIQDALEQFQSETGLPVGAVQLIEDPDRELVSELLKLDEYVDLI-----IPRGGNGLVKLIKQ---ESTIPVL 215 (415)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCEEEE-----EECCCHHHHHHHHH---CCCCCEE
T ss_conf 9999999999998610347877887504899888999996007831799-----73782899999871---5777760
No 336
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=31.11 E-value=42 Score=15.01 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=58.3
Q ss_pred HHHHHHHHHCCCEEEEECCHH----HHHHHHHHCCCCCEEEE----------------C-CCCCC---CCHHHHHHHHCC
Q ss_conf 999999998898999999979----99999971799948997----------------0-78998---773899996143
Q gi|254780892|r 15 KVGRHLFNDFGFMVFEATSVC----EAREFCEKELLPNYLVI----------------D-ESMEG---VLEFIAHVRQMP 70 (133)
Q Consensus 15 ~~l~~~L~~~g~~v~~a~~g~----eAl~~~~~~~~pdlii~----------------D-~~mP~---~~~l~~~ir~~~ 70 (133)
+.+..+++ .+++...-.+|. +++..+.+ ..|+-+.+ | +.||. .+|+.+.+--.
T Consensus 314 ~~i~~~l~-~~~~~vilG~gd~~le~~~~~la~-~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amr- 390 (487)
T COG0297 314 EAIDELLE-QGWQLVLLGTGDPELEEALRALAS-RHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMR- 390 (487)
T ss_pred HHHHHHHH-HCCEEEEEECCCHHHHHHHHHHHH-HCCCEEEEEEEECHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH-
T ss_conf 99999997-083699982682789999999998-667609999633689999998449899957767687589999987-
Q ss_pred CCCCCEEEEEECCCCHHHHHHH---HHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4889739999638998999999---9769988997698989999999999999999
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAG---ARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a---~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
+-.+||+-=||-=.....-.. ..-++++|+.+|.++..|..++++++...+.
T Consensus 391 -yGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~ 445 (487)
T COG0297 391 -YGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRA 445 (487)
T ss_pred -CCCCCEECCCCCCCCEECCCCCHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf -1884467546886541037661100375037998269989999999999999608
No 337
>TIGR00623 sula cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. The expression of SulA is repressed by LexA. The N-terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=30.62 E-value=36 Score=15.41 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=58.4
Q ss_pred EEEECCCHHHHH-HHHHHHHHCCCEEE--EECCHHHHHH--HHHHCCCC--CEEEECCCCC-CCCHHHHHHHHCCCCCCC
Q ss_conf 999739989999-99999998898999--9999799999--99717999--4899707899-877389999614348897
Q gi|254780892|r 4 LLLVDSSHIVRK-VGRHLFNDFGFMVF--EATSVCEARE--FCEKELLP--NYLVIDESME-GVLEFIAHVRQMPLGTDV 75 (133)
Q Consensus 4 ILiVDD~~~~r~-~l~~~L~~~g~~v~--~a~~g~eAl~--~~~~~~~p--dlii~D~~mP-~~~~l~~~ir~~~~~~~~ 75 (133)
|.--||.|.+.+ .+-=+|...|-+.- -=-++.+-+. .+.+...| .++=+.-.-| +..| ..+|+...+..-
T Consensus 35 ~VY~E~QP~~~QLLLLPLL~QLG~QSRW~LWLTPQQKLS~~WvQ~SGLPl~Kv~QisQ~sP~~T~E--~M~rAL~TGNYs 112 (168)
T TIGR00623 35 VVYREDQPMMAQLLLLPLLQQLGQQSRWQLWLTPQQKLSKEWVQSSGLPLTKVMQISQLSPVNTVE--SMIRALRTGNYS 112 (168)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHH--HHHHHHHCCCCE
T ss_conf 654278628899999999987323344442037113655898862689643442110368112799--999997149934
Q ss_pred EEE-EEECC---CCHHHHHHHHHCC-CCEEEECCCCHHHH
Q ss_conf 399-99638---9989999999769-98899769898999
Q gi|254780892|r 76 FVY-YLLME---VDFEKMIAGARAG-ANSFLLKPFNRETL 110 (133)
Q Consensus 76 pii-~lT~~---~~~~~~~~a~~~G-a~~yl~KP~~~~~L 110 (133)
-|| -++.+ .+......|.+.| |.+||.+|++....
T Consensus 113 VViGWl~~eLTEee~~~L~~AA~~G~a~GFIMRP~r~~s~ 152 (168)
T TIGR00623 113 VVIGWLTDELTEEEHAKLVEAAEEGNAMGFIMRPVRAISQ 152 (168)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHCCC
T ss_conf 8871466304767899999998538971253378021034
No 338
>TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972 This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes. The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . .
Probab=30.56 E-value=43 Score=14.96 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=58.4
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHH-HCCCCCEEEECC------CCCCCCHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 99999999988989999999799999997-179994899707------89987738999961434889739999638998
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDE------SMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDF 86 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g~eAl~~~~-~~~~pdlii~D~------~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~ 86 (133)
.+.|+.+|...|++- ..|.+|--++.. ++..+ .=++|- -|||...|+..+|++ ++++=+=|++-+.
T Consensus 48 ~dSL~~IL~~~~~En--~~s~~e~~~la~~KN~~Y-~~LlD~~lTp~d~LPGi~~lL~~Lk~~----~ikialASaSkNA 120 (190)
T TIGR01990 48 EDSLERILKLGGKEN--KYSEEEKEELAERKNDYY-VELLDKELTPEDVLPGIKSLLEDLKKK----NIKIALASASKNA 120 (190)
T ss_pred HHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHH-HHHHHCCCCHHHHCCCHHHHHHHHHHC----CCCEEEEEHHHHH
T ss_conf 899999973379888--857789999999877999-999750689866040189999999984----8948873023448
Q ss_pred HHHHHHHH-CCCCEEEE--------CCCCHHHHHHHHHHH
Q ss_conf 99999997-69988997--------698989999999999
Q gi|254780892|r 87 EKMIAGAR-AGANSFLL--------KPFNRETLRFAMREL 117 (133)
Q Consensus 87 ~~~~~a~~-~Ga~~yl~--------KP~~~~~L~~~i~~~ 117 (133)
....+.+. ....||++ || +|+.+..+...+
T Consensus 121 ~~vLekL~L~~~Fd~IvDp~~~~~gKP-dPEIFL~AA~~L 159 (190)
T TIGR01990 121 PTVLEKLELRDYFDAIVDPAEIKKGKP-DPEIFLAAAEGL 159 (190)
T ss_pred HHHHHHHHHHHCCCEEECHHHHCCCCC-CHHHHHHHHHHC
T ss_conf 999998214220422645456217877-867999999763
No 339
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=30.29 E-value=44 Score=14.93 Aligned_cols=72 Identities=11% Similarity=-0.083 Sum_probs=46.9
Q ss_pred EECCHHHHHHHHHHCCCCCEEEECCCC----------------CCCCHH---HHHHHHCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 999979999999717999489970789----------------987738---9999614348897399996389989999
Q gi|254780892|r 30 EATSVCEAREFCEKELLPNYLVIDESM----------------EGVLEF---IAHVRQMPLGTDVFVYYLLMEVDFEKMI 90 (133)
Q Consensus 30 ~a~~g~eAl~~~~~~~~pdlii~D~~m----------------P~~~~l---~~~ir~~~~~~~~pii~lT~~~~~~~~~ 90 (133)
.+.++.+.+........||.|.+|=.= |-..++ -+.++.......+.++.--+.....+..
T Consensus 210 ~~~~~~~~ia~~~aka~~D~I~IdG~eGGTGAaP~~~~d~~GlP~~~~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ 289 (367)
T pfam01645 210 VSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVA 289 (367)
T ss_pred ECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 14776899999875367888997178986775548899744246999999999999870675764999769978889999
Q ss_pred HHHHCCCCEEE
Q ss_conf 99976998899
Q gi|254780892|r 91 AGARAGANSFL 101 (133)
Q Consensus 91 ~a~~~Ga~~yl 101 (133)
+++.+||+.+-
T Consensus 290 ka~aLGAD~v~ 300 (367)
T pfam01645 290 KAAALGADAVY 300 (367)
T ss_pred HHHHHCCCHHH
T ss_conf 99985653542
No 340
>KOG1601 consensus
Probab=30.27 E-value=12 Score=18.29 Aligned_cols=101 Identities=15% Similarity=-0.012 Sum_probs=57.4
Q ss_pred EEECCCHHHHHHHHHHHHHCCCE----EEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEE
Q ss_conf 99739989999999999988989----9999997999999971799948997078998773--89999614348897399
Q gi|254780892|r 5 LLVDSSHIVRKVGRHLFNDFGFM----VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 5 LiVDD~~~~r~~l~~~L~~~g~~----v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii 78 (133)
+.+||+...+.++.+.....-+. .....+..+.. .......+|+++.+..||++.+ ............++|+.
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (340)
T KOG1601 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESF-VAATSFSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVP 97 (340)
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf 45664446600011454346665555553457655443-32235556766765333555321345521466454678865
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9963899899999997699889976989
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
+++...........+..|+.+|+.||..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 125 (340)
T KOG1601 98 SMPSSNSSSSSSSSVSPSASLELTKPDR 125 (340)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4554454554445546641124555555
No 341
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.16 E-value=44 Score=14.91 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=47.9
Q ss_pred HHHHHHHCCC--EE-EEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 9999998898--99-9999979999999717999489970789987-738999961434889739999638998999999
Q gi|254780892|r 17 GRHLFNDFGF--MV-FEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG 92 (133)
Q Consensus 17 l~~~L~~~g~--~v-~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a 92 (133)
++++-+..++ .+ .++.+-+++.+.+.. . +|.|.+|-.-|.. -+....+|.. .+. ..+-.||.-+.+...+-
T Consensus 183 i~~~r~~~~~~~~IeVEv~~l~q~~~a~~~-g-~DiI~LDnm~~~~~~~~v~~l~~~--~~~-v~iEaSGgIn~~ni~~y 257 (285)
T PRK07428 183 ITRIRQQIPYPLTIEVETETLEQVQEALEY-G-ADIIMLDNMPVDQMQQAVQLIRQQ--NPR-VKIEASGNITLETIRAV 257 (285)
T ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHC-C-CCEEEECCCCHHHHHHHHHHHHHH--CCC-EEEEEECCCCHHHHHHH
T ss_conf 999997489982699996989999999966-9-999998799999999999998730--898-89999899999999999
Q ss_pred HHCCCCEEE
Q ss_conf 976998899
Q gi|254780892|r 93 ARAGANSFL 101 (133)
Q Consensus 93 ~~~Ga~~yl 101 (133)
...|++-..
T Consensus 258 A~tGVD~Is 266 (285)
T PRK07428 258 AETGVDYIS 266 (285)
T ss_pred HHCCCCEEE
T ss_conf 974999998
No 342
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.14 E-value=44 Score=14.91 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=45.2
Q ss_pred CHHHH---HHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 98999---99999999889899999997------9999999717999489970789987738999961434889739999
Q gi|254780892|r 10 SHIVR---KVGRHLFNDFGFMVFEATSV------CEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 10 ~~~~r---~~l~~~L~~~g~~v~~a~~g------~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~l 80 (133)
|+... ..+.+.++..||++....++ .++++.+.+.. +|-+|+-..-+.-......+++ ..+|+|++
T Consensus 11 npf~~~~~~gie~~~~~~Gy~~~i~~t~~~~~~e~~~i~~l~~~~-vdGiIi~~~~~~~~~~~~~l~~----~~iPvV~~ 85 (266)
T cd06282 11 NPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQR-VDGLILTVADAATSPALDLLDA----ERVPYVLA 85 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHH----CCCCEEEE
T ss_conf 889999999999999987998999979999799999999999659-9879996378775599999985----59978999
Q ss_pred ECC----------CCHH----HHHHHHHCCCC--EEEECCCC
Q ss_conf 638----------9989----99999976998--89976989
Q gi|254780892|r 81 LME----------VDFE----KMIAGARAGAN--SFLLKPFN 106 (133)
Q Consensus 81 T~~----------~~~~----~~~~a~~~Ga~--~yl~KP~~ 106 (133)
... ++.+ ......+.|-. .|+.-|+.
T Consensus 86 ~~~~~~~~~~V~~Dn~~~~~~~~~~L~~~G~~~i~~i~~~~~ 127 (266)
T cd06282 86 YNDPQPGRPSVSVDNRAAARDVAQALAALGHRRIAMLAGRLA 127 (266)
T ss_pred ECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 504789999899887999999999999739956999977788
No 343
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=29.92 E-value=44 Score=14.89 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCCEEEECCCCC-----C-C-CHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 999999999988989--999999799999997179994899707899-----8-7-738999961434889739999638
Q gi|254780892|r 13 VRKVGRHLFNDFGFM--VFEATSVCEAREFCEKELLPNYLVIDESME-----G-V-LEFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~--v~~a~~g~eAl~~~~~~~~pdlii~D~~mP-----~-~-~~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
.....-+.|+..|+. +.-+.+|-..+..+.. ..||.|=+|-.+= + . ..+++.+-.....-++.+| .-+-
T Consensus 137 ~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fv~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEGV 214 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEGV 214 (256)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE-EEEC
T ss_conf 999999999977998999789997165999985-79974999699998630383117999999999997499899-9706
Q ss_pred CCHHHHHHHHHCCCC---EE-EECCCCHHHHHHHHH
Q ss_conf 998999999976998---89-976989899999999
Q gi|254780892|r 84 VDFEKMIAGARAGAN---SF-LLKPFNRETLRFAMR 115 (133)
Q Consensus 84 ~~~~~~~~a~~~Ga~---~y-l~KP~~~~~L~~~i~ 115 (133)
...+......+.|++ +| +.||...+.+...+.
T Consensus 215 Et~~ql~~L~~~G~~~~QGy~f~~P~~~~~~~~~~~ 250 (256)
T COG2200 215 ETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 969999999977999885474178898689999975
No 344
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=29.88 E-value=44 Score=14.88 Aligned_cols=71 Identities=8% Similarity=0.200 Sum_probs=44.3
Q ss_pred CCEEEEC-CCC-C-CC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 9489970-789-9-87-73899996143488973999963899899999997699889976989899999999999999
Q gi|254780892|r 47 PNYLVID-ESM-E-GV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 47 pdlii~D-~~m-P-~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
+.+||+| .++ . +. ..+.+.+.. ....+.+|++|. +.+.....+.+-...|-.+|++.+++..+++++.+..
T Consensus 126 ~KiiIlDEad~lt~~Aq~aLlk~lEe--~~~~~~fIl~t~--~~~~ii~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~E 200 (337)
T PRK12402 126 YKLILFDNAEALREDAQQALRRIMER--YSETCRFIFSTT--QPSKLIPPIRSRCLPLFFRPVPDDEIRSVLESIAAAE 200 (337)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEEEECC--CCCCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 04999707131799999999988740--887669987238--6444752477624454358989999999999999984
No 345
>PRK05973 replicative DNA helicase; Provisional
Probab=29.78 E-value=45 Score=14.87 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCC-CEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 9999999998898999-----999979999999717999-489970789987--73899996143488973999963899
Q gi|254780892|r 14 RKVGRHLFNDFGFMVF-----EATSVCEAREFCEKELLP-NYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~-----~a~~g~eAl~~~~~~~~p-dlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
-+.+-++....||.-- .+....-|.+.+. +..| |+||+--. |+| ..|.-.+-.+.....-|++|.|=+-.
T Consensus 26 h~ald~ia~~egf~~ws~l~~~~~~~~pa~~l~~-gLqPGDLIIlAAR-PsMGKTafaLnla~~A~k~g~~v~fFSLEM~ 103 (237)
T PRK05973 26 HEALDQIAATEGFSRWSLLAAKAAATTPAEELFG-QLRPGDLVLLGAR-PGQGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHC-CCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8999999986271216888876303695899856-8998677999428-9887899999999999995996699961599
Q ss_pred HHHHHH-HHHCCCC
Q ss_conf 899999-9976998
Q gi|254780892|r 86 FEKMIA-GARAGAN 98 (133)
Q Consensus 86 ~~~~~~-a~~~Ga~ 98 (133)
.+...+ ....|+.
T Consensus 104 ~~ql~~RL~~~~~~ 117 (237)
T PRK05973 104 EKDVLDRLRALGVD 117 (237)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999972778
No 346
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.63 E-value=45 Score=14.86 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=63.3
Q ss_pred EEEEEC---CCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCE
Q ss_conf 799973---9989999999999988989--99999979999999717999489970789987-73899996143488973
Q gi|254780892|r 3 SLLLVD---SSHIVRKVGRHLFNDFGFM--VFEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVF 76 (133)
Q Consensus 3 ~ILiVD---D~~~~r~~l~~~L~~~g~~--v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~p 76 (133)
+++|+- .++....-.+.+..+.|.+ |.-... .+--+.+. .. |+.++--.-.|. +-++... ...+|
T Consensus 326 rl~I~Gp~d~~~~y~~ec~~lv~~lgL~~~V~F~G~-~dv~~~l~--~~-Dv~vl~S~~Eg~plvllEAm-----A~G~P 396 (475)
T cd03813 326 EGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGF-QNVKEYLP--KL-DVLVLTSISEGQPLVILEAM-----AAGIP 396 (475)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCC-CCHHHHHH--HC-CEEEECCCCCCCCHHHHHHH-----HCCCC
T ss_conf 999977998885899999999998299872798387-89899998--57-99996573346757999999-----76998
Q ss_pred EEEEECCCCHHHHHHHH---HCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99996389989999999---76998899769898999999999999
Q gi|254780892|r 77 VYYLLMEVDFEKMIAGA---RAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 77 ii~lT~~~~~~~~~~a~---~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
+|. |.-+...+.+... ..|..++++.|-+++.|..++.++++
T Consensus 397 vVa-TdVGg~~e~v~~~~~~~~G~~G~lvp~~d~~~LA~ai~~Ll~ 441 (475)
T cd03813 397 VVA-TDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCCCHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 897-269981887538665677885489699999999999999973
No 347
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=29.54 E-value=45 Score=14.85 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=23.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCH
Q ss_conf 9997399899999999999889899999997
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSV 34 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g 34 (133)
+.|+=||+..++.+.+++++.||++..-.++
T Consensus 28 l~Vlvd~~~a~~ni~~~a~~~G~~v~~~e~~ 58 (67)
T cd03421 28 IEVLVDNEVAKENVSRFAESRGYEVSVEEKG 58 (67)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 9999868417889999999779987899839
No 348
>pfam03830 PTSIIB_sorb PTS system sorbose subfamily IIB component.
Probab=29.48 E-value=45 Score=14.84 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=30.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHCC
Q ss_conf 7799973998999999999998---8989999999799999997179
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFND---FGFMVFEATSVCEAREFCEKEL 45 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~---~g~~v~~a~~g~eAl~~~~~~~ 45 (133)
++|+||||....=...+.++.. .|..+ ...+-++|.+.+.+..
T Consensus 27 ~~IiVvdD~~A~d~~~k~~l~ma~P~gvk~-~i~sv~~a~~~l~~~~ 72 (151)
T pfam03830 27 NRIIVVNDEVANDELRKTLLKMAAPAGVKV-SIFSVEKAIEVIKKGK 72 (151)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCCCEE-EEEEHHHHHHHHHCCC
T ss_conf 999997752247999999999638999879-9987999999985767
No 349
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.28 E-value=46 Score=14.82 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=5.4
Q ss_pred CCCHHHHHHHHHCCC
Q ss_conf 899899999997699
Q gi|254780892|r 83 EVDFEKMIAGARAGA 97 (133)
Q Consensus 83 ~~~~~~~~~a~~~Ga 97 (133)
.+......++++.|-
T Consensus 218 ~D~~~~~~~~i~~G~ 232 (277)
T cd06319 218 FDAEPEFIELLKSGA 232 (277)
T ss_pred CCCCHHHHHHHHCCC
T ss_conf 379799999987599
No 350
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=29.07 E-value=46 Score=14.80 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=37.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE----EEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 77999739989999999999988989----99999979999999717999489970
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFM----VFEATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~----v~~a~~g~eAl~~~~~~~~pdlii~D 53 (133)
+.+.-||-+.......++-+.--|+. -..+.+.-+.+..+.+...+|+||+|
T Consensus 147 ~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~VilD 202 (286)
T pfam10672 147 SQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVIID 202 (286)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEEC
T ss_conf 77999919889999999999976999543699983099999998617999879987
No 351
>PRK04759 consensus
Probab=28.97 E-value=46 Score=14.79 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=58.2
Q ss_pred CEEEEEC--CCHHHHHH---HHHHHHHCCCEEEEECCHHHHHHHHHHCC---------CCCEEEECCCCCCCCHH-HHHH
Q ss_conf 7799973--99899999---99999988989999999799999997179---------99489970789987738-9999
Q gi|254780892|r 2 DSLLLVD--SSHIVRKV---GRHLFNDFGFMVFEATSVCEAREFCEKEL---------LPNYLVIDESMEGVLEF-IAHV 66 (133)
Q Consensus 2 ~~ILiVD--D~~~~r~~---l~~~L~~~g~~v~~a~~g~eAl~~~~~~~---------~pdlii~D~~mP~~~~l-~~~i 66 (133)
++|.||= +++...+. +...|...|++|..-....+++....... ..|+|++ =||+|. ++..
T Consensus 6 ~~I~Iv~k~~~~~~~~~~~~l~~~L~~~g~~v~vd~~~~~~l~~~~~~~~~~~~~l~~~~Dlvi~----lGGDGTlL~aa 81 (294)
T PRK04759 6 NVIAIIGKPRDQQAIQTHKELYHWLTSLGYTVFIDDRLAAILTDVPQEHFASLVELGKKADLAIV----VGGDGNMLGAA 81 (294)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCHHHCCCCCCEEEE----ECCCHHHHHHH
T ss_conf 79999941799799999999999998689999991688655334772223775563766568999----84785899999
Q ss_pred HHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 614348897399996389989999999769988997698989999999999999
Q gi|254780892|r 67 RQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 67 r~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
|.. ...++||+-+. .|--+||+- ++.+++...+.++++.
T Consensus 82 r~~-~~~~~PilgiN-------------~G~lGFLt~-~~~~~~~~~l~~il~g 120 (294)
T PRK04759 82 RVL-SRFDISVIGVN-------------RGNLGFLTD-LNPEDFQERLQAVLDG 120 (294)
T ss_pred HHH-CCCCCCEEEEE-------------CCCEEEECC-CCHHHHHHHHHHHHCC
T ss_conf 986-01699689884-------------586467414-6888999999999759
No 352
>PRK07589 ornithine cyclodeaminase; Validated
Probab=28.93 E-value=46 Score=14.79 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=42.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH------H--CCCCCEEEECCCCCC
Q ss_conf 977999739989999999999988989999999799999997------1--799948997078998
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE------K--ELLPNYLVIDESMEG 58 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~------~--~~~pdlii~D~~mP~ 58 (133)
+++|.+.+=++...+-+.+-+...|+++..+.|.++|.+.+. . ...| ++--+|--||
T Consensus 154 i~~V~v~~r~~~~a~~~a~~l~~~g~~v~~~~s~~eAv~~ADIIvTaT~s~~~~P-il~~~~v~pG 218 (346)
T PRK07589 154 IEEIRLYDIDPAATAKLARNLAGPGLRIVRCRSVAEAVEGADIITTVTADKANAT-ILTPDMIEPG 218 (346)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEEECCCCCCCC-CCCHHHCCCC
T ss_conf 8689998288799999999987269808994999999721988887114778886-0238775999
No 353
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.84 E-value=46 Score=14.78 Aligned_cols=74 Identities=11% Similarity=0.024 Sum_probs=49.0
Q ss_pred CCCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 99489970-789987---73899996143488973999963899899999997699889976989899999999999999
Q gi|254780892|r 46 LPNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 46 ~pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
++.+.|+| +||=.. +.+++.+. ....++.+|+-|.. ....-.-.-.-...|-.|+++.+.+...+.+++...
T Consensus 119 r~KvyiiDEvHmls~~afnalLKtlE--epP~hv~FilaTTd--~~k~p~tilSRc~~f~l~~~~~~~i~~~l~~i~~~E 194 (816)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLE--EPPPHVKFILATTD--PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE 194 (816)
T ss_pred CEEEEEEECHHHCCHHHHHHHHHHHC--CCCCCEEEEEECCC--HHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 44799984154339999999998403--79866489995588--011528898777652236799999999999999982
Q ss_pred HH
Q ss_conf 99
Q gi|254780892|r 122 KS 123 (133)
Q Consensus 122 ~~ 123 (133)
+.
T Consensus 195 ~i 196 (816)
T PRK07003 195 RI 196 (816)
T ss_pred CC
T ss_conf 99
No 354
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=28.72 E-value=47 Score=14.76 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=24.8
Q ss_pred ECCCCCCCCHHHHHHHHC-CCCCCCEEEEEECCCCHH
Q ss_conf 707899877389999614-348897399996389989
Q gi|254780892|r 52 IDESMEGVLEFIAHVRQM-PLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 52 ~D~~mP~~~~l~~~ir~~-~~~~~~pii~lT~~~~~~ 87 (133)
-|+.||++ ++.++|+.. ....++-|.++|+.+...
T Consensus 27 eDlklP~~-elg~~I~~~f~~gk~~~VtVlsAmGeE~ 62 (69)
T cd04468 27 EDLKLPEG-ELGKEIREKFDEGKDVLVTVLSAMGEEQ 62 (69)
T ss_pred HCCCCCCH-HHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf 12569947-9999999997679918999963069214
No 355
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=28.64 E-value=47 Score=14.75 Aligned_cols=73 Identities=10% Similarity=-0.142 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHCCCCCEEEECCCCCCCC-----HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99799999997179994899707899877-----3899996143488973999963899899999997699889976989
Q gi|254780892|r 32 TSVCEAREFCEKELLPNYLVIDESMEGVL-----EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 32 ~~g~eAl~~~~~~~~pdlii~D~~mP~~~-----~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
.+-.++++.+.+......|+++++=|||. ++...++...... -||+........ .--=.+...|+....-|.+
T Consensus 25 ~~i~~~l~~a~~d~~vkaIvL~InSPGGs~~~s~~i~~~I~~~r~~~-KPV~a~~~~~aA-Sg~Y~iA~aad~I~a~p~s 102 (177)
T cd07014 25 DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAG-KPVVASGGGNAA-SGGYWISTPANYIVANPST 102 (177)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCC-CHHHHHHHCCCEEEECCCC
T ss_conf 99999999995199962899996189818899999999999988659-989999778562-0577876127889986997
No 356
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=28.61 E-value=47 Score=14.75 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=23.4
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-ECCCC
Q ss_conf 738999961434889739999638998999999976998899-76989
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL-LKPFN 106 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl-~KP~~ 106 (133)
.+.+..++.. ....+||++=++--.-.+..+|+.+||+..+ -.|+-
T Consensus 214 i~~L~~i~~~-v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l 260 (299)
T cd02809 214 IDALPEIVAA-VGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFL 260 (299)
T ss_pred HHHHHHHHHH-HCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf 9999999998-5467289971884753689999976998898778999
No 357
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=28.47 E-value=47 Score=14.74 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCC----------C--------------HHHHHHHHCCCCCCCEEEEEECCCCHH-
Q ss_conf 979999999717999489970789987----------7--------------389999614348897399996389989-
Q gi|254780892|r 33 SVCEAREFCEKELLPNYLVIDESMEGV----------L--------------EFIAHVRQMPLGTDVFVYYLLMEVDFE- 87 (133)
Q Consensus 33 ~g~eAl~~~~~~~~pdlii~D~~mP~~----------~--------------~l~~~ir~~~~~~~~pii~lT~~~~~~- 87 (133)
|+.||.+++.+ . |+++|+|++-|.- . ++..++.+. ..++.||+++-..+...
T Consensus 2 tp~eA~e~L~~-~-~~~~lIDVRt~~E~~~~G~ipga~~I~~~~~~~~~~~~~f~~~l~~~-~~~d~~ivv~C~sG~RS~ 78 (117)
T cd01522 2 TPAEAWALLQA-D-PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEK-VGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH-CCCCCEEEEECCCCCHHH
T ss_conf 98999999984-9-98399989988999862988885112034311224581278999974-599986999889981599
Q ss_pred HHHHH-HHCCCC
Q ss_conf 99999-976998
Q gi|254780892|r 88 KMIAG-ARAGAN 98 (133)
Q Consensus 88 ~~~~a-~~~Ga~ 98 (133)
...+. .+.|-.
T Consensus 79 ~Aa~~L~~~Gf~ 90 (117)
T cd01522 79 AAAEAAAQAGFT 90 (117)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999985987
No 358
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=28.37 E-value=47 Score=14.73 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE--ECC
Q ss_conf 38999961434889739999638998999999976998899--769
Q gi|254780892|r 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL--LKP 104 (133)
Q Consensus 61 ~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl--~KP 104 (133)
.+.+++|. .-++||+...+..+.+...++++.|..|++ .+|
T Consensus 266 ~~a~~ir~---~~~~Pvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~ 308 (353)
T cd02930 266 WATAKLKR---AVDIPVIASNRINTPEVAERLLADGDADMVSMARP 308 (353)
T ss_pred HHHHHHHH---HCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999887---54834896599798999999998799624784099
No 359
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=28.25 E-value=47 Score=14.71 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=45.5
Q ss_pred EECCHHHHHHHHHHCCCCCEEEECCCCC---------CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9999799999997179994899707899---------8773899996143488973999963899899999997699889
Q gi|254780892|r 30 EATSVCEAREFCEKELLPNYLVIDESME---------GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF 100 (133)
Q Consensus 30 ~a~~g~eAl~~~~~~~~pdlii~D~~mP---------~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~y 100 (133)
++.+-+|+.+.... . ||-|.+---.| .+.+.++.++.. ..+|++.+-| -+.+...+..+.||+..
T Consensus 110 S~h~~eea~~A~~~-g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~---~~iP~vAIGG-i~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 110 STHDLEEALEAEEL-G-ADYVGLGPIFPTSTKPDAPPLGLEGLREIREL---VNIPVVAIGG-INLENVPEVLEAGADGV 183 (211)
T ss_pred ECCCHHHHHHHHHC-C-CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECC-CCHHHHHHHHHHCCCEE
T ss_conf 04999999998763-9-99999888678899988774678999999982---7999899848-89999999998298769
Q ss_pred E
Q ss_conf 9
Q gi|254780892|r 101 L 101 (133)
Q Consensus 101 l 101 (133)
-
T Consensus 184 A 184 (211)
T COG0352 184 A 184 (211)
T ss_pred E
T ss_conf 7
No 360
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=28.24 E-value=34 Score=15.60 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=45.5
Q ss_pred EEEEECCCHHHHHHHHHH---HHHCCCEEEEE--------------------------------CCHHHHH----HHHHH
Q ss_conf 799973998999999999---99889899999--------------------------------9979999----99971
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHL---FNDFGFMVFEA--------------------------------TSVCEAR----EFCEK 43 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~---L~~~g~~v~~a--------------------------------~~g~eAl----~~~~~ 43 (133)
||||.-||=.....++.+ |. .+.+|..+ .++.+++ ..+..
T Consensus 2 rILlTNDDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~GTPaDCV~lal~~l~~ 80 (252)
T COG0496 2 RILLTNDDGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVNGTPADCVILGLNELLK 80 (252)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHCC
T ss_conf 49996688657777999999986-27979998269877454344003567232472365289358818999999998646
Q ss_pred CCCCCEEEECCCCC-CC------CHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 79994899707899-87------73899996143488973999963899
Q gi|254780892|r 44 ELLPNYLVIDESME-GV------LEFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 44 ~~~pdlii~D~~mP-~~------~~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
+..||+|++-++.- |+ .|.+....+ .....+|-|.+|-...
T Consensus 81 ~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~E-a~~~GipsIA~S~~~~ 128 (252)
T COG0496 81 EPRPDLVVSGINAGANLGDDVIYSGTVAAAME-AALLGIPAIAISLAYR 128 (252)
T ss_pred CCCCCEEEECCCCCCCCCCCEEEEEHHHHHHH-HHHCCCCCEEEEEHHH
T ss_conf 78999899676478865511342014999999-9872964236541000
No 361
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=28.17 E-value=48 Score=14.70 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=8.3
Q ss_pred HHCCCCEEEECC
Q ss_conf 976998899769
Q gi|254780892|r 93 ARAGANSFLLKP 104 (133)
Q Consensus 93 ~~~Ga~~yl~KP 104 (133)
.+.||+-.++||
T Consensus 230 ~~EGAD~lMVKP 241 (314)
T cd00384 230 IEEGADILMVKP 241 (314)
T ss_pred HHCCCCEEEECC
T ss_conf 761998698526
No 362
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=27.87 E-value=48 Score=14.67 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=18.4
Q ss_pred CEEEEECCCHHHHHHHHH---HHHHCCCEEE
Q ss_conf 779997399899999999---9998898999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRH---LFNDFGFMVF 29 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~---~L~~~g~~v~ 29 (133)
+||+||||=-+.-..+.. .++..|++|.
T Consensus 118 ~kvvvveDV~TtG~s~~~A~~~i~~ag~~V~ 148 (187)
T TIGR00336 118 DKVVVVEDVITTGGSILEAVEAIQEAGGEVA 148 (187)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 6389995143424799999999986188899
No 363
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. .
Probab=27.61 E-value=44 Score=14.93 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCCCHHHHHHH-HHCCCCEEEECCCCHHHHH
Q ss_conf 38998999999-9769988997698989999
Q gi|254780892|r 82 MEVDFEKMIAG-ARAGANSFLLKPFNRETLR 111 (133)
Q Consensus 82 ~~~~~~~~~~a-~~~Ga~~yl~KP~~~~~L~ 111 (133)
++.+.....++ -.+|.++|++-|+.+.++.
T Consensus 42 ~qp~~A~~~aaa~aAG~~Gy~H~Pv~~g~~~ 72 (136)
T TIGR01244 42 EQPDSAAIKAAAEAAGLTGYLHLPVTAGDLT 72 (136)
T ss_pred CCCCHHHHHHHHHHCCCCCCEECCCCCCCCC
T ss_conf 8887288999998568886100542178887
No 364
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=27.58 E-value=18 Score=17.26 Aligned_cols=53 Identities=8% Similarity=-0.074 Sum_probs=31.5
Q ss_pred CEEEEECCCHH-----HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 77999739989-----999999999988989999999799999997179994899707
Q gi|254780892|r 2 DSLLLVDSSHI-----VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54 (133)
Q Consensus 2 ~~ILiVDD~~~-----~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~ 54 (133)
+|||+|=-|-. +...+.+.++..|++.....+|+.++-....+..+|.|..|+
T Consensus 114 ~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaTGQTGili~g~Gv~iDav~~DF 171 (302)
T pfam07755 114 KRVLTVGTDCAVGKMTTALELERALRERGLNAAFVATGQTGILIAGYGVPLDAVPADF 171 (302)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCEEEECCCHHHH
T ss_conf 7899960573340789999999999977998479972761368815247843224766
No 365
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=27.37 E-value=49 Score=14.62 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCCEE-EEECCHHHHHHHHHHCCCCCEEEECCC-------CCCC--CHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 999999999889899-999997999999971799948997078-------9987--738999961434889739999638
Q gi|254780892|r 14 RKVGRHLFNDFGFMV-FEATSVCEAREFCEKELLPNYLVIDES-------MEGV--LEFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 14 r~~l~~~L~~~g~~v-~~a~~g~eAl~~~~~~~~pdlii~D~~-------mP~~--~~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
...++.+=+..+.-+ -.+++-+||+....-+ +|+|=+-+. -+.+ +++++++.+. ..+|+|.=-..
T Consensus 112 ~~~i~~i~~~~~~l~MAD~st~ee~~~A~~~G--~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~---~~~pvIaEGri 186 (219)
T cd04729 112 AELIKRIHEEYNCLLMADISTLEEALNAAKLG--FDIIGTTLSGYTEETAKTEDPDFELLKELRKA---LGIPVIAEGRI 186 (219)
T ss_pred HHHHHHHHHHHCCEEEEECCCHHHHHHHHHCC--CCEEECCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCC
T ss_conf 99999999986977887548899999999849--98997021456778788999878999999997---59939970698
Q ss_pred CCHHHHHHHHHCCCCEEEEC
Q ss_conf 99899999997699889976
Q gi|254780892|r 84 VDFEKMIAGARAGANSFLLK 103 (133)
Q Consensus 84 ~~~~~~~~a~~~Ga~~yl~K 103 (133)
..++...+|+++||...++=
T Consensus 187 ~tPe~a~~a~~~GA~aVVVG 206 (219)
T cd04729 187 NSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCHHHHHHHHHCCCCEEEEC
T ss_conf 99999999998399899989
No 366
>PRK07024 short chain dehydrogenase; Provisional
Probab=27.35 E-value=49 Score=14.62 Aligned_cols=80 Identities=9% Similarity=-0.116 Sum_probs=53.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC---CCCEEEECCCCCCC-CHHHHHHHHCCCCCCCE
Q ss_conf 977999739989999999999988989999999799999997179---99489970789987-73899996143488973
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL---LPNYLVIDESMEGV-LEFIAHVRQMPLGTDVF 76 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~---~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~p 76 (133)
.++|||.--+.=+...+...|-..|+++..+.-.++.++.+.++. ...++-+|+.=++. ..+.+.+...... +-
T Consensus 2 ~~~VlITGassGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~--iD 79 (256)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGC--PD 79 (256)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--CC
T ss_conf 9989998460299999999999889989999898899999999767997699981179999999999999998399--87
Q ss_pred EEEEEC
Q ss_conf 999963
Q gi|254780892|r 77 VYYLLM 82 (133)
Q Consensus 77 ii~lT~ 82 (133)
+++..+
T Consensus 80 ilinNA 85 (256)
T PRK07024 80 VVIANA 85 (256)
T ss_pred EEEECC
T ss_conf 999888
No 367
>PRK05993 short chain dehydrogenase; Provisional
Probab=27.24 E-value=50 Score=14.61 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=45.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHH
Q ss_conf 7799973998999999999998898999999979999999717999489970789987-73899996
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVR 67 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir 67 (133)
|.+||.--+.=+...+...|...|++|......++.+..+..+.. ..+.+|+.=|+- .++...+.
T Consensus 5 K~vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~-~~~~~Dv~d~~~v~~~v~~~~ 70 (277)
T PRK05993 5 RSILITGCSSGIGAYCAHALQKRGWRVFATCRKPEDIAALEAEGL-EAFYLDYAEPESIAALVAQVL 70 (277)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHH
T ss_conf 689992568699999999999879999999799999999984898-199972667799999999999
No 368
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=27.22 E-value=50 Score=14.60 Aligned_cols=54 Identities=11% Similarity=-0.117 Sum_probs=28.6
Q ss_pred CCCCEEEECCCCCC---------C----C-HHHHHHHHCCCCCCCEEEEEECCCCH---H-HHHHHHHCCCCE
Q ss_conf 99948997078998---------7----7-38999961434889739999638998---9-999999769988
Q gi|254780892|r 45 LLPNYLVIDESMEG---------V----L-EFIAHVRQMPLGTDVFVYYLLMEVDF---E-KMIAGARAGANS 99 (133)
Q Consensus 45 ~~pdlii~D~~mP~---------~----~-~l~~~ir~~~~~~~~pii~lT~~~~~---~-~~~~a~~~Ga~~ 99 (133)
.. +++++|+.=|+ - . .+...+-..-..++.|||+.-..+.. . -.....+.|-.+
T Consensus 8 ~~-e~~liDVRe~~ef~~gHI~gA~niP~~~le~~~~~~~p~kd~~Ivvyc~~g~~~~s~~Aa~~L~~~Gy~~ 79 (92)
T cd01532 8 RE-EIALIDVREEDPFAQSHPLWAANLPLSRLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGYTD 79 (92)
T ss_pred CC-CEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99-8899978987888528885677298889877677638799982999969999629999999999869968
No 369
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.21 E-value=50 Score=14.60 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=55.9
Q ss_pred HHHHHHHHCC-CEEEEECCHHHHHHHH---HHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 9999999889-8999999979999999---71799948997078998773899996143488973999963899899999
Q gi|254780892|r 16 VGRHLFNDFG-FMVFEATSVCEAREFC---EKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIA 91 (133)
Q Consensus 16 ~l~~~L~~~g-~~v~~a~~g~eAl~~~---~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~ 91 (133)
-+-..|...+ .-|....+.++|+... ..+.. .++=+-++-|+..+.+++++.. ++++ +|-.-+--+.+...+
T Consensus 5 ~~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi-~~iEiTl~t~~a~~~I~~l~~~--~p~~-~iGaGTV~~~e~~~~ 80 (210)
T PRK07455 5 DWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGM-RLIEITWNSDQPAELISQLREK--LPEC-IIGTGTLLTLEDLEE 80 (210)
T ss_pred HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHH--CCCC-EEEEEECCCHHHHHH
T ss_conf 99999997997999975999999999999998799-8899968998899999999987--8996-898881878999999
Q ss_pred HHHCCCCEEEECCCCHHHHHHH
Q ss_conf 9976998899769898999999
Q gi|254780892|r 92 GARAGANSFLLKPFNRETLRFA 113 (133)
Q Consensus 92 a~~~Ga~~yl~KP~~~~~L~~~ 113 (133)
+.++|| +|++-|....++...
T Consensus 81 a~~aGA-~FiVSP~~~~~vi~~ 101 (210)
T PRK07455 81 AIAAGA-QFCFTPHVDLELIQA 101 (210)
T ss_pred HHHCCC-CEEECCCCCHHHHHH
T ss_conf 998699-999868888999999
No 370
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=27.20 E-value=50 Score=14.60 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=31.6
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 7389999614348897399996389989999999769988997
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.++++.+|+ .-.+||+...+..+.+...++++.|..|++.
T Consensus 278 ~~~~~~ik~---~~~~Pvi~vG~i~~p~~ae~~l~~G~aD~V~ 317 (370)
T cd02929 278 EPYIKFVKQ---VTSKPVVGVGRFTSPDKMVEVVKSGILDLIG 317 (370)
T ss_pred HHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCCHHH
T ss_conf 599999998---6088089978979999999999879942645
No 371
>KOG1680 consensus
Probab=27.18 E-value=40 Score=15.15 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=24.6
Q ss_pred CEEEECCCCCC---------CCHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 48997078998---------77389999614348897399996389
Q gi|254780892|r 48 NYLVIDESMEG---------VLEFIAHVRQMPLGTDVFVYYLLMEV 84 (133)
Q Consensus 48 dlii~D~~mP~---------~~~l~~~ir~~~~~~~~pii~lT~~~ 84 (133)
.+-++-++=|. |.+++..+.........+++++|+..
T Consensus 46 ~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g 91 (290)
T KOG1680 46 GIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG 91 (290)
T ss_pred CEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 7689983786775211589999999999974046765479997688
No 372
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=27.05 E-value=50 Score=14.59 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=23.9
Q ss_pred EEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCCHHHHH-HHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 89970789987--7389999614348897399996389989999-9997699889976989899999999
Q gi|254780892|r 49 YLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMR 115 (133)
Q Consensus 49 lii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~-~a~~~Ga~~yl~KP~~~~~L~~~i~ 115 (133)
+|+=|+.--|+ .+.+..+|... ..-..++++. +..+-.. ...+.|..-+ -=++.++|.+.+.
T Consensus 122 vvIEDViTTGgSil~ai~~lr~~G-~~V~~v~viv--DReegg~e~l~~~Gi~l~--sl~t~~~ll~~l~ 186 (206)
T PRK13809 122 LVINDMVSSGKSIIETAVALEENG-LVVREALVFL--DRRKEACQPLGPQGIKVS--SVFTVPTLIKALI 186 (206)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCC-CEEEEEEEEE--ECCCCHHHHHHHCCCCEE--EECCHHHHHHHHH
T ss_conf 999733446800999999999879-9699999999--265167999997799189--9677999999999
No 373
>KOG0053 consensus
Probab=26.67 E-value=51 Score=14.54 Aligned_cols=92 Identities=12% Similarity=-0.061 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCCEEEECCCC-C--CCCHHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 999999999998898999999-979999999717999489970789-9--877389999614348897399996389989
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVFEAT-SVCEAREFCEKELLPNYLVIDESM-E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~~a~-~g~eAl~~~~~~~~pdlii~D~~m-P--~~~~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
-++.+++.++..+|.++.... +-.+.++.+.++.. ++|.+---- | .+.+ +.++++.....++++++=.....+
T Consensus 128 gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t-~~V~~ESPsNPll~v~D-I~~l~~la~~~g~~vvVDnTf~~p- 204 (409)
T KOG0053 128 GTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENT-KAVFLESPSNPLLKVPD-IEKLARLAHKYGFLVVVDNTFGSP- 204 (409)
T ss_pred CHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCC-HHHHHHHHHHCCCEEEEECCCCCC-
T ss_conf 099999999997093543304166788998626670-69999779997500456-999999874179789995776763-
Q ss_pred HHHHHHHCCCCEE---EECCCC
Q ss_conf 9999997699889---976989
Q gi|254780892|r 88 KMIAGARAGANSF---LLKPFN 106 (133)
Q Consensus 88 ~~~~a~~~Ga~~y---l~KP~~ 106 (133)
..++.+..|||=. ++|=|+
T Consensus 205 ~~~~pL~lGADIV~hSaTKyi~ 226 (409)
T KOG0053 205 YNQDPLPLGADIVVHSATKYIG 226 (409)
T ss_pred CCCCHHHCCCCEEEEEEEEEEC
T ss_conf 3367121388789985101444
No 374
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=26.59 E-value=51 Score=14.53 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=8.3
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 989999999799999
Q gi|254780892|r 25 GFMVFEATSVCEARE 39 (133)
Q Consensus 25 g~~v~~a~~g~eAl~ 39 (133)
++.|..-.|+.|...
T Consensus 395 nl~V~~PaD~~E~~~ 409 (576)
T PRK05444 395 NMVIMAPSDENELRQ 409 (576)
T ss_pred CEEEEEECCHHHHHH
T ss_conf 818996299999999
No 375
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.44 E-value=51 Score=14.52 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCEEEEC-CCCCC--C-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9489970-78998--7-738999961434889739999638998999999976998899769898999999999999999
Q gi|254780892|r 47 PNYLVID-ESMEG--V-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 47 pdlii~D-~~mP~--~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+.+.|+| .||=. . +.|++.+. +...++.+|+.|. +.+.+..-+.+-...|=.|-+..+.+...+.++.....
T Consensus 121 yKVyIIDEaHmls~~afNALLKtLE--EPP~hvvFIlaTT--ep~kip~TI~SRcq~f~Fr~i~~~~~~~~l~~i~~~E~ 196 (775)
T PRK07764 121 YRIFIIDEAHMVTTAGFNALLKIVE--EPPEHLIFIFATT--EPEKVIGTIRSRTHHYPFRLVPPGTMRPYLERICAQEG 196 (775)
T ss_pred EEEEEEECHHHHCHHHHHHHHHHHC--CCCCCEEEEEECC--CHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 3599985354407999999988622--7864627999548--73547167764102345266999999999999999839
No 376
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=26.28 E-value=52 Score=14.50 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=24.8
Q ss_pred EEECCCCCCC---CHH-HHHHHHC----CCCCCCEEEEEECCCCHHHHHHHHHC
Q ss_conf 9970789987---738-9999614----34889739999638998999999976
Q gi|254780892|r 50 LVIDESMEGV---LEF-IAHVRQM----PLGTDVFVYYLLMEVDFEKMIAGARA 95 (133)
Q Consensus 50 ii~D~~mP~~---~~l-~~~ir~~----~~~~~~pii~lT~~~~~~~~~~a~~~ 95 (133)
...++.+|++ +++ +++++.. .....+|.++||+....+...+.++.
T Consensus 21 g~~~v~~~~~~t~~~l~~~~i~~l~~~~~~~~~iPl~iMtS~~T~~~T~~~~~~ 74 (266)
T cd04180 21 SSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEK 74 (266)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 706725899985999999999999998617998319996680044799999998
No 377
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.90 E-value=52 Score=14.46 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=23.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 9994899707899877389999614348897399996389989999999
Q gi|254780892|r 45 LLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA 93 (133)
Q Consensus 45 ~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~ 93 (133)
..||+||.. ..++..+...++++ ..+|+++++.........+.+
T Consensus 68 L~PDlVi~~-~~~~~~~~~~~L~~----~gI~v~~~~~~~~~~~~~e~i 111 (186)
T cd01141 68 LKPDLVILY-GGFQAQTILDKLEQ----LGIPVLYVNEYPSPLGRAEWI 111 (186)
T ss_pred HCCCEEEEE-CCCCCHHHHHHHHH----CCCCEEEEECCCCCHHHHHHH
T ss_conf 099999995-88786789999996----499579960676521089999
No 378
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=25.88 E-value=52 Score=14.46 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=34.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8897399996389989999999769988997698989999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
...+|+|. |..+... +..+.|.++++..|-+.++|..++.+++..
T Consensus 283 a~G~PvVa-s~~~g~~---e~v~~g~~G~l~~~~d~~~la~~i~~ll~d 327 (355)
T cd03799 283 AMGLPVIS-TDVSGIP---ELVEDGETGLLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred HCCCCEEE-CCCCCCH---HHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 66998999-1799857---662289858997999999999999999879
No 379
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=25.83 E-value=53 Score=14.45 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=35.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8897399996389989999999769988997698989999999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 123 (133)
...+|||. |..+... +....|.++|+.+|-+.++|..++.+++...+.
T Consensus 285 a~G~PvIa-s~~gg~~---e~i~~g~~G~lv~~~d~~~la~ai~~ll~d~~~ 332 (359)
T cd03823 285 AAGVPVIA-SDIGGMA---ELVRDGVNGLLFPPGDAEDLAAALERLIDDPDL 332 (359)
T ss_pred HCCCCEEE-CCCCCCH---HHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHH
T ss_conf 82998998-8899817---560379867998999999999999999849999
No 380
>pfam06792 UPF0261 Uncharacterized protein family (UPF0261).
Probab=25.69 E-value=53 Score=14.44 Aligned_cols=43 Identities=19% Similarity=0.075 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 9999999998898999999---9799999997179994899707899
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEAT---SVCEAREFCEKELLPNYLVIDESME 57 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~---~g~eAl~~~~~~~~pdlii~D~~mP 57 (133)
-..++..|+..||+|..++ .|..|+|.+.++..++. ++|+..-
T Consensus 200 v~~~~~~Le~~GyEv~VFHAtG~GG~amE~Li~~G~~~~-VlD~Ttt 245 (403)
T pfam06792 200 VQAAREALEARGYEVLVFHATGTGGRAMESLIREGAFAG-VLDLTTT 245 (403)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEE-EEECCHH
T ss_conf 999999998669708998368970789999997798059-9966448
No 381
>PRK07579 hypothetical protein; Provisional
Probab=25.64 E-value=53 Score=14.43 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 9779997399899999999999889
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFG 25 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g 25 (133)
|++|||+-||......+..+..+-+
T Consensus 1 ~~kil~~~dn~~~~~~~~~l~~~~~ 25 (245)
T PRK07579 1 MKKILVVTDNRTILSDFKNLIGSKN 25 (245)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 9549999535889999999857998
No 382
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=25.45 E-value=41 Score=15.10 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=34.2
Q ss_pred CCEEEECCCCC---CC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 94899707899---87---73899996143488973999963899899999997
Q gi|254780892|r 47 PNYLVIDESME---GV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94 (133)
Q Consensus 47 pdlii~D~~mP---~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~ 94 (133)
+|-||+|==-. |+ +|+++.| .+.-||++||+.||.-|.+.-.+-++
T Consensus 182 YDTIIIDEAHERSLNIDFLLGYLK~l--L~rRPDLKiIITSATID~ERFs~HFn 233 (1320)
T TIGR01967 182 YDTIIIDEAHERSLNIDFLLGYLKQL--LPRRPDLKIIITSATIDPERFSRHFN 233 (1320)
T ss_pred CCCEEECCHHHHHHHHHHHHHHHHHH--CCCCCCCCEEEECCCCCHHHHHHHHC
T ss_conf 67336511231123388999888763--26688652574002357446878622
No 383
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=25.34 E-value=54 Score=14.40 Aligned_cols=61 Identities=25% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHHHHHCCCCCEEEECCCCC---CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99997179994899707899---877389999614348897399996389989999999769988997
Q gi|254780892|r 38 REFCEKELLPNYLVIDESME---GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 38 l~~~~~~~~pdlii~D~~mP---~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.+.+.+... |++++|.--- .+.+.++.+|.. ++++|||. -.-...+-....+++||+.+.+
T Consensus 233 a~~Lv~AGv-DvivIDtAhGhs~~vi~~ik~ik~~--~~~v~via-GNv~T~~~a~~L~~aGaD~vkV 296 (486)
T PRK05567 233 AEALVKAGV-DVLVVDTAHGHSEGVLDRVREIKAK--YPDVQIIA-GNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHC--CCCCCEEE-EEECHHHHHHHHHHCCCCEEEE
T ss_conf 999997699-8899504452157789999999740--78773687-5120199999999729876996
No 384
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=25.05 E-value=54 Score=14.36 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=32.0
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 7389999614348897399996389989999999769988997
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
..+++++|+. -++||+...+..+.+...++++.|..|++.
T Consensus 294 ~~~a~~ik~~---~~iPvi~~G~i~~p~~ae~~l~~g~aD~V~ 333 (382)
T cd02931 294 LPYCKALKEV---VDVPVIMAGRMEDPELASEAINEGIADMIS 333 (382)
T ss_pred HHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCCHHH
T ss_conf 8999999987---399889968969999999999869965436
No 385
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=24.97 E-value=55 Score=14.35 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=7.0
Q ss_pred HHCCCCEEEECC
Q ss_conf 976998899769
Q gi|254780892|r 93 ARAGANSFLLKP 104 (133)
Q Consensus 93 ~~~Ga~~yl~KP 104 (133)
.+.||+-.++||
T Consensus 236 ~~EGAD~lMVKP 247 (321)
T PRK09283 236 IEEGADMVMVKP 247 (321)
T ss_pred HHHCCCEEEECC
T ss_conf 760998798626
No 386
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=24.90 E-value=55 Score=14.35 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=54.2
Q ss_pred HHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 999999999889899999997-9999999717999489970789987-73899996143488973999963899899999
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIA 91 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g-~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~ 91 (133)
+.-++.+....|.+-.....| .+-+....+ .. ++.++--...|. +-++.++ ...+|+|..-...... +
T Consensus 247 ~~~L~~~i~~l~l~~~V~f~G~~~~~~~~y~-~a-~~~v~~S~~EGfgl~llEAm-----a~GlPvIa~d~~yG~~---e 316 (372)
T cd04949 247 EEKLKELIEELGLEDYVFLKGYTRDLDEVYQ-KA-QLSLLTSQSEGFGLSLMEAL-----SHGLPVISYDVNYGPS---E 316 (372)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-HC-CEEEECCCCCCCCCHHHHHH-----HCCCCEEEECCCCCCH---H
T ss_conf 8999999998299987998899889899997-57-99998020036765899999-----8599999805999968---8
Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 997699889976989899999999999999
Q gi|254780892|r 92 GARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 92 a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
....|.++||.+|-+.+.|..++.++++-.
T Consensus 317 iI~~g~nG~Lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 317 IIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHHCCH
T ss_conf 845898479968999999999999998699
No 387
>PRK11587 putative phosphatase; Provisional
Probab=24.74 E-value=55 Score=14.33 Aligned_cols=107 Identities=15% Similarity=0.085 Sum_probs=52.0
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHH---HCCCCC-------------EEEEC--CCCCCCCHHHH
Q ss_conf 97399899999999999889899999---99799999997---179994-------------89970--78998773899
Q gi|254780892|r 6 LVDSSHIVRKVGRHLFNDFGFMVFEA---TSVCEAREFCE---KELLPN-------------YLVID--ESMEGVLEFIA 64 (133)
Q Consensus 6 iVDD~~~~r~~l~~~L~~~g~~v~~a---~~g~eAl~~~~---~~~~pd-------------lii~D--~~mP~~~~l~~ 64 (133)
+||..+.....+...++..|+...+. ..|..++..+. .....+ ....+ .-+||..+++.
T Consensus 14 LvDS~~~~~~a~~~~~~~~gi~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~elL~ 93 (218)
T PRK11587 14 LVDSLPAVERAWCNWARRHGLAPDEVLAFIHGKQAITSLRHFMAGKSEAEIQAEFTRLEQIEATDTEGITALPGAIALLN 93 (218)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 33499999999999999839898999999638618999998736898789999999999999985459837948999999
Q ss_pred HHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCC--CE-EE-------ECCCCHHHHHHHHHHH
Q ss_conf 996143488973999963899899999997699--88-99-------7698989999999999
Q gi|254780892|r 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGA--NS-FL-------LKPFNRETLRFAMREL 117 (133)
Q Consensus 65 ~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga--~~-yl-------~KP~~~~~L~~~i~~~ 117 (133)
.+++ ..+|+-+.|+....-........|. .+ |+ .|| +++-+..+++++
T Consensus 94 ~L~~----~gi~~avvTs~~~~~~~~~~~~~~l~~~~~~v~~ddv~~~KP-~Pd~yl~A~~~L 151 (218)
T PRK11587 94 HLNK----AGIPWAIVTSGSMPVASARHKAAGLPAPEVFVTAERVKRGKP-EPDAYLLGAQLL 151 (218)
T ss_pred HHHH----CCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHC
T ss_conf 9987----799778872682789999997238997869997110557899-868999999982
No 388
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=24.65 E-value=55 Score=14.32 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=30.9
Q ss_pred CEEEEECCCHHHHHHHHHHHH---HCCCEEEEECCHHHHHHHHHHCC
Q ss_conf 779997399899999999999---88989999999799999997179
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFN---DFGFMVFEATSVCEAREFCEKEL 45 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~---~~g~~v~~a~~g~eAl~~~~~~~ 45 (133)
++|+||||....=...+.++. ..|..+ ...+-++|.+.+.+..
T Consensus 26 ~~IvVvdD~~A~d~~~k~~l~mA~P~gvk~-~i~sv~~a~~~l~~~~ 71 (151)
T cd00001 26 NRIIVVNDEVANDELRKTLLKLAAPPGVKL-RIFTVEKAIEAINSPK 71 (151)
T ss_pred CEEEEECCHHCCCHHHHHHHHHHCCCCCEE-EEEEHHHHHHHHHCCC
T ss_conf 999997622307999999999758999889-9987999999985666
No 389
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=24.51 E-value=56 Score=14.30 Aligned_cols=72 Identities=11% Similarity=-0.074 Sum_probs=43.1
Q ss_pred EECCHHHHHHHHHHCCCCCEEEECC----------------CCCCCCHH---HHHHHHCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 9999799999997179994899707----------------89987738---9999614348897399996389989999
Q gi|254780892|r 30 EATSVCEAREFCEKELLPNYLVIDE----------------SMEGVLEF---IAHVRQMPLGTDVFVYYLLMEVDFEKMI 90 (133)
Q Consensus 30 ~a~~g~eAl~~~~~~~~pdlii~D~----------------~mP~~~~l---~~~ir~~~~~~~~pii~lT~~~~~~~~~ 90 (133)
++.++..-+...-....||.|.+|= -||-..++ -..+........+.++.-.+.....+..
T Consensus 222 ~~g~~~~~l~~~~~~~~~DfItIDG~eGGTGAaP~~~~d~~GlP~~~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~ 301 (392)
T cd02808 222 VAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVA 301 (392)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 88898899999999647999996079987541429999749973899999999999976996763799638857478999
Q ss_pred HHHHCCCCEEE
Q ss_conf 99976998899
Q gi|254780892|r 91 AGARAGANSFL 101 (133)
Q Consensus 91 ~a~~~Ga~~yl 101 (133)
+|+.+||+.+-
T Consensus 302 kalaLGAD~v~ 312 (392)
T cd02808 302 KALALGADAVG 312 (392)
T ss_pred HHHHHCCCHHH
T ss_conf 99986756451
No 390
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=24.41 E-value=56 Score=14.29 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCEEEEC
Q ss_conf 999999999889899999997------9999999717999489970
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSV------CEAREFCEKELLPNYLVID 53 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g------~eAl~~~~~~~~pdlii~D 53 (133)
.+.+.+.++..||++..+.+. .+.++.+.+.. +|.||+-
T Consensus 18 ~~gi~~~a~~~g~~~~~~~~~~~~~~e~~~i~~~~~~~-vdgiI~~ 62 (267)
T cd01536 18 NKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQG-VDGIIIS 62 (267)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 99999999984999999969999999999999999759-9999993
No 391
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.37 E-value=56 Score=14.28 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=60.4
Q ss_pred CEEEEEC--CCHHHHH---HHHHHHHHCCCEEEEECCHHHHHHHH-----HH---CCCCCEEEECCCCCCCCHH-HHHHH
Q ss_conf 7799973--9989999---99999998898999999979999999-----71---7999489970789987738-99996
Q gi|254780892|r 2 DSLLLVD--SSHIVRK---VGRHLFNDFGFMVFEATSVCEAREFC-----EK---ELLPNYLVIDESMEGVLEF-IAHVR 67 (133)
Q Consensus 2 ~~ILiVD--D~~~~r~---~l~~~L~~~g~~v~~a~~g~eAl~~~-----~~---~~~pdlii~D~~mP~~~~l-~~~ir 67 (133)
|||.||= +++...+ .+.+.|...|++|..-.+..+.+..- .. ....|++++ =||+|. ++..|
T Consensus 5 k~vgIv~k~~~~~a~~~~~~l~~~L~~~gi~v~ld~~~a~~~~~~~~~~~~~~~~~~~~Dlii~----lGGDGT~L~~~~ 80 (296)
T PRK01231 5 RNIGLIGRLGSSQVVETLRRLKRFLLDRHLHVILEEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGSLLGAAR 80 (296)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHCCCCEEEEEE----ECCCCHHHHHHH
T ss_conf 8999998489879999999999999878899999324776658788662453341653049999----578728999999
Q ss_pred HCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 14348897399996389989999999769988997698989999999999999
Q gi|254780892|r 68 QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 68 ~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
.. ...++||+-+ ..|--+||+. ++++++...+.++++.
T Consensus 81 ~~-~~~~~PilGi-------------N~G~lGFL~~-~~~~~~~~~l~~i~~g 118 (296)
T PRK01231 81 AL-ARHNVPVLGI-------------NRGRLGFLTD-IRPDELEFKLAEVLDG 118 (296)
T ss_pred HH-CCCCCCEEEE-------------ECCCCEEECC-CCHHHHHHHHHHHHHC
T ss_conf 96-0369978988-------------5587006345-6889999999999818
No 392
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=24.32 E-value=56 Score=14.28 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=9.0
Q ss_pred HHCCCCEEEECCC
Q ss_conf 9769988997698
Q gi|254780892|r 93 ARAGANSFLLKPF 105 (133)
Q Consensus 93 ~~~Ga~~yl~KP~ 105 (133)
.+.||+-.++||-
T Consensus 238 ~~EGAD~lMVKP~ 250 (322)
T pfam00490 238 IEEGADMVMVKPA 250 (322)
T ss_pred HHCCCCEEEECCC
T ss_conf 7609986986264
No 393
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=24.26 E-value=56 Score=14.27 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=49.4
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEEE---C----CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 779997-3998---99999999999889899999---9----97999999971799948997078998773899996143
Q gi|254780892|r 2 DSLLLV-DSSH---IVRKVGRHLFNDFGFMVFEA---T----SVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 2 ~~ILiV-DD~~---~~r~~l~~~L~~~g~~v~~a---~----~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
+|+-++ +|+. ...+..+..++..|.+|... . +-...+..+.+ ..||+|++-..-++...+++++++..
T Consensus 133 kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~-~~pD~v~~~~~~~~~~~~~~q~~~~G 211 (333)
T cd06331 133 KRFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKA-AGPDVVLSTLVGDSNVAFYRQFAAAG 211 (333)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 87999944861789999999999998599499999706997247999999876-59999999356603999999999759
Q ss_pred CCC-CCEEEEEECCCCHHH
Q ss_conf 488-973999963899899
Q gi|254780892|r 71 LGT-DVFVYYLLMEVDFEK 88 (133)
Q Consensus 71 ~~~-~~pii~lT~~~~~~~ 88 (133)
..+ .+++ .+.......
T Consensus 212 ~~~~~~~~--~~~~~~~~~ 228 (333)
T cd06331 212 LDADRIPI--LSLTLDENE 228 (333)
T ss_pred CCCCCEEE--EECCCCHHH
T ss_conf 99666189--975456788
No 394
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=24.25 E-value=56 Score=14.27 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=47.8
Q ss_pred EEEEECCCHHH---------HHHHHHHHHHCCCEEEEECCHH------HHHHHHHH-CCCCCEEEECCCC----CC----
Q ss_conf 79997399899---------9999999998898999999979------99999971-7999489970789----98----
Q gi|254780892|r 3 SLLLVDSSHIV---------RKVGRHLFNDFGFMVFEATSVC------EAREFCEK-ELLPNYLVIDESM----EG---- 58 (133)
Q Consensus 3 ~ILiVDD~~~~---------r~~l~~~L~~~g~~v~~a~~g~------eAl~~~~~-~~~pdlii~D~~m----P~---- 58 (133)
=|.+-|||.+. -+-...-++..||+|....+|. +|++.+.+ ...|-+|++--.+ |+
T Consensus 180 LIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiIG~Gsp~kegt 259 (663)
T COG0021 180 LIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTIIGKGSPNKEGT 259 (663)
T ss_pred EEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 89999379842326755555366999998549869860188899999999999974679973899986640588876887
Q ss_pred --------CCHHHHHHHHCCCCCCCEEE
Q ss_conf --------77389999614348897399
Q gi|254780892|r 59 --------VLEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 59 --------~~~l~~~ir~~~~~~~~pii 78 (133)
+-+-++..|+.-.+..-|+.
T Consensus 260 ~~~HGapLg~~ev~~~k~~lgw~~~~F~ 287 (663)
T COG0021 260 HKVHGAPLGEEEVAAAKKALGWEPEPFE 287 (663)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 6545788887999999998489987544
No 395
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=24.21 E-value=56 Score=14.27 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=49.6
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEE-CCH---HHHHHHHHHCCCCCEEEE-----C--------------CCCCCCC-H
Q ss_conf 97399899999999999889899999-997---999999971799948997-----0--------------7899877-3
Q gi|254780892|r 6 LVDSSHIVRKVGRHLFNDFGFMVFEA-TSV---CEAREFCEKELLPNYLVI-----D--------------ESMEGVL-E 61 (133)
Q Consensus 6 iVDD~~~~r~~l~~~L~~~g~~v~~a-~~g---~eAl~~~~~~~~pdlii~-----D--------------~~mP~~~-~ 61 (133)
+.-++.....-+.+.|...|+++.+. .+. .++++.+.+ .+|++++= | +..|+.. +
T Consensus 10 lr~~~~~~a~~~~~al~~~Gi~~iEitl~t~~a~~~i~~l~~-~~~~~~iGaGTV~~~~~~~~a~~aGa~FivsP~~~~~ 88 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRK-EFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPE 88 (190)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 977999999999999998699889996788029999999998-6898089652347799999999859989973779999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 899996143488973999963899899999997699889976989
Q gi|254780892|r 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 62 l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
+++..++. ++|+ +-+-..+.+..+|++.|++-.=.=|.+
T Consensus 89 v~~~a~~~----~~~~--iPGv~TpsEi~~A~~~G~~~vK~FPa~ 127 (190)
T cd00452 89 VVKAANRA----GIPL--LPGVATPTEIMQALELGADIVKLFPAE 127 (190)
T ss_pred HHHHHHHC----CCCE--ECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999982----9966--578799999999998799989989551
No 396
>PRK02399 hypothetical protein; Provisional
Probab=24.16 E-value=57 Score=14.26 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 9999999998898999999---9799999997179994899707899
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEAT---SVCEAREFCEKELLPNYLVIDESME 57 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~---~g~eAl~~~~~~~~pdlii~D~~mP 57 (133)
-..++..|+..||+|..++ .|..|+|.+.++..++. ++|+..-
T Consensus 200 v~~~~~~Le~~GyEv~VFHAtG~GG~aME~Li~~G~~~~-VlDlTtt 245 (407)
T PRK02399 200 VQAARSELEARGYEVLVFHATGTGGRAMEKLADSGLIAG-VLDLTTT 245 (407)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEE-EEECCHH
T ss_conf 999999998679708998368970789999997798059-9966448
No 397
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815 This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=24.15 E-value=51 Score=14.53 Aligned_cols=31 Identities=6% Similarity=0.026 Sum_probs=17.7
Q ss_pred CCCCEEEEEECCCCHHHH--HHHHHCCCCEEEE
Q ss_conf 889739999638998999--9999769988997
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKM--IAGARAGANSFLL 102 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~--~~a~~~Ga~~yl~ 102 (133)
...||||.+|+.+..|.. ++++..-.+-||+
T Consensus 30 e~~iPvI~CtSKTAAEv~~lr~~L~L~~~PyIv 62 (224)
T TIGR02463 30 EAGIPVILCTSKTAAEVEALRKALGLTGDPYIV 62 (224)
T ss_pred HCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 758976425873078999999984889898177
No 398
>KOG2550 consensus
Probab=24.14 E-value=57 Score=14.26 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCE
Q ss_conf 79999999717999489970789987---7389999614348897399996389989999999769988
Q gi|254780892|r 34 VCEAREFCEKELLPNYLVIDESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANS 99 (133)
Q Consensus 34 g~eAl~~~~~~~~pdlii~D~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~ 99 (133)
..+-++.+.+... |+|++|-.=-+- .++++.+|+ .+|++.||. ..--..+.....+++||+.
T Consensus 252 dK~rl~ll~~aGv-dvviLDSSqGnS~~qiemik~iK~--~yP~l~Via-GNVVT~~qa~nLI~aGaDg 316 (503)
T KOG2550 252 DKERLDLLVQAGV-DVVILDSSQGNSIYQLEMIKYIKE--TYPDLQIIA-GNVVTKEQAANLIAAGADG 316 (503)
T ss_pred HHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH--HCCCCEEEC-CCEEEHHHHHHHHHCCCCE
T ss_conf 1677888663488-689996688850457999999986--688863431-6553388899998736760
No 399
>pfam09001 DUF1890 Domain of unknown function (DUF1890). This domain is found in a set of hypothetical archaeal proteins.
Probab=24.14 E-value=57 Score=14.26 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHH----------------------CCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 9999999999889899999997999999971----------------------799948997078998773899996143
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVFEATSVCEAREFCEK----------------------ELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~----------------------~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
..-.+...|...|+++..|.|.. |+..++- +..+|+++.=.+=-.+.......+..+
T Consensus 15 ~~lYl~~~Lk~~G~~v~Va~npA-A~kLl~vaDpe~~Ylk~~~dld~~l~~i~e~~~d~~~~FvHNDagvsYa~T~~~i~ 93 (138)
T pfam09001 15 SALYLSNKLKDKGFRVVVAANPA-ALKLLEVADPEKYYLKEVVDLDKGIADIAEGDFDLIFGFVHNDAGVSYAVTMKAVS 93 (138)
T ss_pred HHHHHHHHHHHCCCCEEEECCHH-HHHHHHHCCCCCCHHCCEEEHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHC
T ss_conf 99999999876696069966988-87361211876400104355999874552068887999973562266789888754
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECC-CCHHHHHHHHH
Q ss_conf 4889739999638998999999976998899769-89899999999
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMR 115 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP-~~~~~L~~~i~ 115 (133)
......+|| |. +.+...+..+.++.-+..|- .++.-|..++.
T Consensus 94 ~~~~~aiVF--g~-~~e~la~~i~~~~e~i~~ra~HNP~pl~~kld 136 (138)
T pfam09001 94 NAKTYAIVF--GE-HAEELAETIEFDAEVIAARAFHNPMPLKVKLD 136 (138)
T ss_pred CCCEEEEEE--CC-CHHHHHHHHCCCCCEEEEECCCCCHHHHHHHC
T ss_conf 786589993--58-87999998648981798431248666655521
No 400
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=24.13 E-value=57 Score=14.26 Aligned_cols=98 Identities=23% Similarity=0.296 Sum_probs=61.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE-----EEEECCHHHHHHHHHHCCCCCEEEEC-C--CCC--C-C------------
Q ss_conf 7999739989999999999988989-----99999979999999717999489970-7--899--8-7------------
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFM-----VFEATSVCEAREFCEKELLPNYLVID-E--SME--G-V------------ 59 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~-----v~~a~~g~eAl~~~~~~~~pdlii~D-~--~mP--~-~------------ 59 (133)
|||=+|.|+...+.=-.+-+..|.. +.|-.-+++-..+++ ...||++++= . ... + .
T Consensus 115 rVLH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~-~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSkyF 193 (292)
T TIGR02855 115 RVLHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIE-EVRPDILVITGHDAYSKNKGNYGDLNAYRHSKYF 193 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCEEECCCCHHHHHHCCCCHHH
T ss_conf 477422888899999998866197279999841218088999997-3099789994666302167871136423665689
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 738999961434889739999638998999999976998899769
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP 104 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP 104 (133)
.+..+.+|.....-|=-||| |-.=..+-.--++|||+ |-.-|
T Consensus 194 v~~V~~aR~~~P~lD~LVIF--AGACQShfE~li~AGAN-FASSP 235 (292)
T TIGR02855 194 VETVREARKYVPSLDQLVIF--AGACQSHFESLIRAGAN-FASSP 235 (292)
T ss_pred HHHHHHHHHHCCCCCCHHHH--HCCCHHHHHHHHHHCCC-CCCCC
T ss_conf 99999986317875323433--21214457999974565-45771
No 401
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=24.11 E-value=57 Score=14.25 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=8.7
Q ss_pred EECCCCHHHHHHHHHCCCCEEE
Q ss_conf 9638998999999976998899
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
+||-.+......|+.+||..|+
T Consensus 68 ItGP~d~km~iNAlnSga~~~m 89 (511)
T cd00480 68 ITGPQDRKMVINALNSGAAVFM 89 (511)
T ss_pred CCCCCHHHHHHHHHCCCCCEEE
T ss_conf 0187608999998737987786
No 402
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.84 E-value=57 Score=14.22 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=60.2
Q ss_pred HHHHHHHHHHCC-CEEEEECCHHHHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHH
Q ss_conf 999999999889-89999999799999997---17999489970789987738999961434889739999638998999
Q gi|254780892|r 14 RKVGRHLFNDFG-FMVFEATSVCEAREFCE---KELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKM 89 (133)
Q Consensus 14 r~~l~~~L~~~g-~~v~~a~~g~eAl~~~~---~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~ 89 (133)
++-+-..|...+ .-|....+.++|.+.++ .+.. .++=+-++-|+..+.++.++.+ +++.. |-.-+--+.+..
T Consensus 5 ~~~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi-~~iEITlrt~~a~~~I~~l~~~--~p~~~-vGaGTVl~~e~~ 80 (212)
T PRK06015 5 TEKLLSILKGQPVIPVLLIDDVEHAVPLARALARGGL-PAIEITLRTPAALDAIRAVAAE--VEEAI-VGAGTILNAKQF 80 (212)
T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHH--CCCCE-EEEEECCCHHHH
T ss_conf 9999999987997999977999999999999998799-8899968995199999999986--99967-954211569999
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 9999769988997698989999999
Q gi|254780892|r 90 IAGARAGANSFLLKPFNRETLRFAM 114 (133)
Q Consensus 90 ~~a~~~Ga~~yl~KP~~~~~L~~~i 114 (133)
.++.++|| +|++-|....++...-
T Consensus 81 ~~a~~aGA-~FiVSP~~~~~v~~~a 104 (212)
T PRK06015 81 EDAAKAGS-RFIVSPGTTQELLAAA 104 (212)
T ss_pred HHHHHCCC-CEEECCCCCHHHHHHH
T ss_conf 99998499-8998589999999999
No 403
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.84 E-value=57 Score=14.22 Aligned_cols=86 Identities=8% Similarity=0.004 Sum_probs=52.9
Q ss_pred HHHHHHHHCCCEEEEECCHH-----H---HHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 99999998898999999979-----9---99999717999489970789987--73899996143488973999963899
Q gi|254780892|r 16 VGRHLFNDFGFMVFEATSVC-----E---AREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 16 ~l~~~L~~~g~~v~~a~~g~-----e---Al~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
.+-....+.+.+|..+.||. + ..+.+. ...||.++.= -||. .| -+..|..-...++|.|++|-...
T Consensus 22 ~LDErAdRedI~vrv~gsGaKm~pe~~~~v~~~~~-~~~pDf~i~i--sPN~a~PG-P~~ARE~l~~~~iP~IvI~D~p~ 97 (276)
T PRK00994 22 LLDERADREDIDVRVVGSGAKMGPEEVERVVKKMK-EWKPDFIIVI--SPNPAAPG-PTKAREILSAAGIPCIVIGDAPG 97 (276)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH-HHCCCEEEEE--CCCCCCCC-CHHHHHHHHHCCCCEEEECCCCC
T ss_conf 87654134685499952667779789999999988-4089989997--89988999-56799999756998899748853
Q ss_pred HHHHHHHHHCCCCEEEECCCC
Q ss_conf 899999997699889976989
Q gi|254780892|r 86 FEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 86 ~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
.... .+++....+|+.=|.+
T Consensus 98 ~k~k-d~l~~~g~GYIivk~D 117 (276)
T PRK00994 98 KKKK-DAMEEQGFGYIIVKAD 117 (276)
T ss_pred HHHH-HHHHHCCCCEEEEECC
T ss_conf 3148-8998649847998367
No 404
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=23.66 E-value=58 Score=14.20 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=69.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH--------HHHHCCCCCEEEEC--CCCCC-CCHHHHHHHHC-CC
Q ss_conf 999739989999999999988989999999799999--------99717999489970--78998-77389999614-34
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE--------FCEKELLPNYLVID--ESMEG-VLEFIAHVRQM-PL 71 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~--------~~~~~~~pdlii~D--~~mP~-~~~l~~~ir~~-~~ 71 (133)
+++.+-.......++.++..+|...... +..+-+. ...++.. -++|+| .++|. .++-++.+-.. ..
T Consensus 75 ~~i~~~~l~~~~ll~~i~~~lg~~~~~~-~~~~~~~~l~~~L~~~~~~g~~-~vliIDEAq~L~~~~Le~Lr~L~n~e~~ 152 (269)
T TIGR03015 75 AKLVNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIEQFAAGKR-ALLVVDEAQNLTPELLEELRMLSNFQTD 152 (269)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCC-EEEEEECHHHCCHHHHHHHHHHHCCCCC
T ss_conf 9976999999999999999859898898-9999999999999999966994-6999724221999999999999701358
Q ss_pred CCCCEEEEEECCCCHHHHHHH------HHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 889739999638998999999------9769988997698989999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAG------ARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a------~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
.....-+++.|+.+.+..... .+.-+..|-..|++.++...-|+.-++.
T Consensus 153 ~~~ll~iiL~GqpeL~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~ 207 (269)
T TIGR03015 153 NAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLER 207 (269)
T ss_pred CCCCEEEEEECCHHHHHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8870489995786799987274025455507679984799989999999999986
No 405
>PRK13148 consensus
Probab=23.60 E-value=58 Score=14.20 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=29.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC--EEEEECCHHH
Q ss_conf 97799973998999999999998898--9999999799
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCE 36 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~--~v~~a~~g~e 36 (133)
|++|-|||=..-+...+.+.|+..|+ ++....+..+
T Consensus 1 M~~I~IIDyg~GNl~Sv~~al~~~g~~~~~~i~~~~~~ 38 (225)
T PRK13148 1 MSTIAIVDYGMGNFHSVARALQHAAPDADIRICNRPEQ 38 (225)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 98799997994499999999998578973999899999
No 406
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=23.47 E-value=58 Score=14.18 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=59.7
Q ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHH---HC-CCC----------CEEEECCCCC-CC-----CHHHHHHHHC-CCCC
Q ss_conf 9999999988989999999799999997---17-999----------4899707899-87-----7389999614-3488
Q gi|254780892|r 15 KVGRHLFNDFGFMVFEATSVCEAREFCE---KE-LLP----------NYLVIDESME-GV-----LEFIAHVRQM-PLGT 73 (133)
Q Consensus 15 ~~l~~~L~~~g~~v~~a~~g~eAl~~~~---~~-~~p----------dlii~D~~mP-~~-----~~l~~~ir~~-~~~~ 73 (133)
..+..-+.+.|+.+..|=-|+.-|..+. +. -.| ||-=+|+.+- |. .|-+.+++.- ..+.
T Consensus 96 d~~~~n~~~~GlDAlIaIGGdGTL~~A~~l~~~GGl~vVGVPKTIDNDl~~TD~TFGFDTAv~iATEAlDRLhtTAeSH~ 175 (339)
T TIGR02483 96 DKIVANLKELGLDALIAIGGDGTLGIARRLADKGGLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAESHH 175 (339)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999899649818998668726899999996589854741577546753244022210078999998752400587319
Q ss_pred CCEEEEEECCCCHHHHHHH-HHCCCCEEEE--CCCCHHHHHHHHHHHHHH
Q ss_conf 9739999638998999999-9769988997--698989999999999999
Q gi|254780892|r 74 DVFVYYLLMEVDFEKMIAG-ARAGANSFLL--KPFNRETLRFAMRELPQM 120 (133)
Q Consensus 74 ~~pii~lT~~~~~~~~~~a-~~~Ga~~yl~--KP~~~~~L~~~i~~~~~~ 120 (133)
.+=|+=+-+...==....+ +.-||+-.|. -||+.+++.+++++..++
T Consensus 176 RVmVvEVMGRhAGWIAL~sG~aGGAd~ILIPE~P~d~~~v~~~v~~r~~~ 225 (339)
T TIGR02483 176 RVMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFDIDSVCEKVRERFAR 225 (339)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 48999984854579998843520876789786048889999999999872
No 407
>KOG1618 consensus
Probab=23.41 E-value=59 Score=14.17 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHC
Q ss_conf 987738999961434889739999638998999999976
Q gi|254780892|r 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA 95 (133)
Q Consensus 57 P~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~ 95 (133)
|+..+.++.+......-.+|+|++|.-+...+..+|-+.
T Consensus 54 ~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~l 92 (389)
T KOG1618 54 PGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQEL 92 (389)
T ss_pred CCHHHHHHHHHHCCCCEECCEEEEECCCCCCHHHHHHHH
T ss_conf 645889999973678710468999579986316689999
No 408
>TIGR01233 lacG 6-phospho-beta-galactosidase; InterPro: IPR005928 6-phospho-beta-galactosidase (3.2.1.85 from EC) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. A 6-phospho-beta-D-galactoside + H2O = an alcohol + 6-phospho-D-galactose The genes coding for the enzymes of the tagatose 6-phosphate pathway have been found to be part of the lac operon together with the genes coding for the lactose-phosphotransferase system and the phospho-beta-galactosidase in Lactococcus lactis, Staphlococcus aureus, and Streptococcus mutans. ; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=23.39 E-value=30 Score=15.88 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=41.1
Q ss_pred CCCCCEE-EECCCC---C-CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHC-CCCEEEECCCCHHHHHH
Q ss_conf 7999489-970789---9-87738999961434889739999638998999999976-99889976989899999
Q gi|254780892|r 44 ELLPNYL-VIDESM---E-GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA-GANSFLLKPFNRETLRF 112 (133)
Q Consensus 44 ~~~pdli-i~D~~m---P-~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~-Ga~~yl~KP~~~~~L~~ 112 (133)
...||-| -+||.= | ||++.+.+++. ..|..|++.+|.+ .........+. -.+-.+.-|=+.+-+..
T Consensus 334 ~~~PD~~~~TDWDW~IYP~GlYD~~MR~~N--DYP~~~~~Y~TEN-G~G~K~~l~~NatPdt~~~D~~RIDYVK~ 405 (473)
T TIGR01233 334 RKLPDYVERTDWDWIIYPRGLYDILMRVKN--DYPLVKKIYVTEN-GLGLKDELVDNATPDTVVEDDKRIDYVKK 405 (473)
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCEEEEEC--CCCCCCEEEEECC-CCCCCCCCCCCCCCCCEEECCCCCHHHHH
T ss_conf 237787877654403677640000022343--7899642788407-74520024456788726756862038889
No 409
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.27 E-value=59 Score=14.16 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEE--ECCCCC-CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 99999999988989999999799999997179994899--707899-877389999614348897399996389989999
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV--IDESME-GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMI 90 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii--~D~~mP-~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~ 90 (133)
...+...|...|++|....+..+.+..+......++-= +|+-+- ||+|.+-+.+.. ...++||+-+
T Consensus 18 a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L~a~~~-~~~~iPilGi---------- 86 (278)
T PRK03708 18 AYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILAIGGDGTILRIEHK-TKKEIPILSI---------- 86 (278)
T ss_pred HHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH-CCCCCCEEEE----------
T ss_conf 99999999988998999747865666555567675435787899998786899999996-4789988988----------
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99976998899769898999999999999
Q gi|254780892|r 91 AGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 91 ~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
..|--+||+- +.++++...+.++++
T Consensus 87 ---N~G~lGFLt~-~~~~~~~~~l~~i~~ 111 (278)
T PRK03708 87 ---NMGTLGFLTE-VEPEDTFFALSRLLE 111 (278)
T ss_pred ---ECCCCCCCCC-CCHHHHHHHHHHHHC
T ss_conf ---3587530355-687899999999972
No 410
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.24 E-value=59 Score=14.15 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=56.0
Q ss_pred CEEEEEC--CCHH---HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 7799973--9989---9999999999889899999-------99799999997179994899707899877389999614
Q gi|254780892|r 2 DSLLLVD--SSHI---VRKVGRHLFNDFGFMVFEA-------TSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQM 69 (133)
Q Consensus 2 ~~ILiVD--D~~~---~r~~l~~~L~~~g~~v~~a-------~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~ 69 (133)
+++-++- ++.. ....++..+...|.++... .+-...+..+.+ ..||+|++-..-++...++++.|+.
T Consensus 136 ~~vai~~~~~~~y~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~i~~i~~-~~pD~v~~~~~~~~~~~~~~q~~~~ 214 (334)
T cd06347 136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKA-KNPDVIFLPGYYTEVGLIAKQAREL 214 (334)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHC
T ss_conf 789999846966879999999999997597489997158888876999999986-5999999936616799999999976
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 3488973999963899899999997699889976989
Q gi|254780892|r 70 PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 70 ~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
.-+.|++..++..+......+-+..---+..-|+.
T Consensus 215 --G~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~ 249 (334)
T cd06347 215 --GIKVPILGGDGWDSPKLEEAGGAAAEGVYFTTHFS 249 (334)
T ss_pred --CCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCC
T ss_conf --99776997446687667765078758879995278
No 411
>PRK10433 putative RNA methyltransferase; Provisional
Probab=23.17 E-value=58 Score=14.19 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 8999999999998898
Q gi|254780892|r 11 HIVRKVGRHLFNDFGF 26 (133)
Q Consensus 11 ~~~r~~l~~~L~~~g~ 26 (133)
+-|-....+....+|+
T Consensus 13 p~NIGa~ARaMkN~G~ 28 (228)
T PRK10433 13 AENIGAAARAMKTMGF 28 (228)
T ss_pred CCHHHHHHHHHHCCCC
T ss_conf 7519999999972899
No 412
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.91 E-value=60 Score=14.11 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=35.9
Q ss_pred HHHCCCEEEEECCHH-----HHHHHHHHCCCCCEEEECCCCC---CC-------CHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 998898999999979-----9999997179994899707899---87-------7389999614348897399996389
Q gi|254780892|r 21 FNDFGFMVFEATSVC-----EAREFCEKELLPNYLVIDESME---GV-------LEFIAHVRQMPLGTDVFVYYLLMEV 84 (133)
Q Consensus 21 L~~~g~~v~~a~~g~-----eAl~~~~~~~~pdlii~D~~mP---~~-------~~l~~~ir~~~~~~~~pii~lT~~~ 84 (133)
-+..|++|.-..-+. ..+..+..+..||++++|+.-- +. ..+++.+|+ ..+++||++++...
T Consensus 27 ~r~lg~~viNlG~sG~g~le~~~a~~i~~~~a~~~vi~~g~N~~~~~~~~~~~~~~~V~~ir~--~~p~tPIvlv~~~~ 103 (177)
T cd01844 27 ARRLGLEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRE--THPDTPILLVSPRY 103 (177)
T ss_pred HHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECCC
T ss_conf 985499777146675431028899998618998899963467887478999999999999998--78899789983367
No 413
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=22.88 E-value=60 Score=14.11 Aligned_cols=39 Identities=5% Similarity=0.059 Sum_probs=30.8
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 738999961434889739999638998999999976998899
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
..+.+.+|+. .++||+......+.+...++++.|..|++
T Consensus 264 ~~~a~~ik~~---~~ipvi~vG~i~~~~~ae~~l~~G~aD~V 302 (337)
T PRK13523 264 VPFAEHIKEH---ANIATGAVGLITTGAQAEEILNNNRADLI 302 (337)
T ss_pred HHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCCHH
T ss_conf 4899999987---69709998386999999999987994799
No 414
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=22.88 E-value=60 Score=14.11 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC-CEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 998999999999998898999999979999999717999-489970789987-738999961434889739999638998
Q gi|254780892|r 9 SSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDF 86 (133)
Q Consensus 9 D~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~p-dlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~ 86 (133)
.+-.....+...|+..|+.+..+.++.+..........+ |+++. +--.|- .++...++. -+..+.|+|.+|...+.
T Consensus 15 ~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~-iS~sG~t~~~~~~~~~-a~~~g~~~i~iT~~~~S 92 (131)
T pfam01380 15 TSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIA-ISQSGETRDLLEAAKL-LKARGAKIIAITDSKGS 92 (131)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEE-ECCCCCCHHHHHHHHH-HHHCCCEEEEEECCCCC
T ss_conf 699999999999998689877863658866067567999999999-5489865768987899-99849969999899999
Q ss_pred HHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 99999997699889976989899
Q gi|254780892|r 87 EKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 87 ~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
.....+ +-.|.-|..++.
T Consensus 93 ~la~~a-----d~~l~~~~~~e~ 110 (131)
T pfam01380 93 PLAREA-----DHVLYIIAGPEA 110 (131)
T ss_pred HHHHHC-----CEEEECCCCCEE
T ss_conf 789968-----998987998756
No 415
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=22.87 E-value=60 Score=14.11 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=28.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 889739999638998999999976998899769898999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 119 (133)
...+|||. |.-+... +..+.|.++|+..|-+.+.|.+++..++.
T Consensus 286 a~G~PVVa-sd~gg~~---eiv~~~~~G~lv~~~d~~~la~ai~~ll~ 329 (365)
T cd03825 286 ACGTPVVA-FDVGGIP---DIVDHGVTGYLAKPGDPEDLAEGIEWLLA 329 (365)
T ss_pred HCCCCEEE-CCCCCHH---HHHCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 71998997-3899859---99607982799799999999999999986
No 416
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=22.84 E-value=60 Score=14.11 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=51.3
Q ss_pred HHHHHHHHCCCEEEEECCHH----H----HHH-HHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 99999998898999999979----9----999-99717999489970789987--7389999614348897399996389
Q gi|254780892|r 16 VGRHLFNDFGFMVFEATSVC----E----ARE-FCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYLLMEV 84 (133)
Q Consensus 16 ~l~~~L~~~g~~v~~a~~g~----e----Al~-~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~lT~~~ 84 (133)
.+-....+.+.++..+.||. + +.. ++ ....||.++.= -||. .| -+..|..-...++|.|++|-..
T Consensus 21 ~LDErAdRedI~vrv~gsGaKm~pe~~e~~~~~~l-~~~~pDf~i~i--sPN~a~PG-P~~ARE~l~~~giP~IvI~D~p 96 (276)
T pfam01993 21 LLDERADREDIEVRVVGSGAKMDPECVEEVVLDML-EEFEPDFVIYI--SPNPAAPG-PKKAREMLSDSGYPAVIIGDAP 96 (276)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH-HHHCCCEEEEE--CCCCCCCC-CHHHHHHHHHCCCCEEEECCCC
T ss_conf 87765234686499952666679888999999999-86189989997--89988999-5679999975699879983786
Q ss_pred CHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9899999997699889976989
Q gi|254780892|r 85 DFEKMIAGARAGANSFLLKPFN 106 (133)
Q Consensus 85 ~~~~~~~a~~~Ga~~yl~KP~~ 106 (133)
... ...+++....+|+.=|.+
T Consensus 97 ~~K-~kd~l~~~g~GYIivk~D 117 (276)
T pfam01993 97 GLK-VKDEMEEQGLGYILVKAD 117 (276)
T ss_pred CHH-HHHHHHHCCCCEEEEECC
T ss_conf 332-589998659847998367
No 417
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain; InterPro: IPR011948 This entry represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" , and the NLI interacting factor (NIF)-like phosphatases .; GO: 0016791 phosphoric monoester hydrolase activity.
Probab=22.80 E-value=39 Score=15.20 Aligned_cols=11 Identities=36% Similarity=0.446 Sum_probs=5.0
Q ss_pred CCCCHHHHHHH
Q ss_conf 98773899996
Q gi|254780892|r 57 EGVLEFIAHVR 67 (133)
Q Consensus 57 P~~~~l~~~ir 67 (133)
|...+|++++-
T Consensus 67 P~~deFL~~~s 77 (193)
T TIGR02251 67 PHVDEFLERVS 77 (193)
T ss_pred CCCHHHHHHHH
T ss_conf 87247888775
No 418
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.68 E-value=61 Score=14.09 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=46.8
Q ss_pred CCEEEEC-CCCCCC---CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9489970-789987---738999961434889739999638998999999976998899769898999999999999999
Q gi|254780892|r 47 PNYLVID-ESMEGV---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 47 pdlii~D-~~mP~~---~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
+.+.|+| .||=.. ..+++.+.. ...++.+|+.|.. .+..-.-.-.-...|-.|+++.+.+...+..++....
T Consensus 120 yKVyiiDEvhmLs~~afNAlLKtLEE--PP~~v~FilaTTd--p~Klp~TIlSRC~~f~l~~~~~~~i~~~L~~i~~~E~ 195 (704)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEE--PPEHVKFILATTD--PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK 195 (704)
T ss_pred EEEEEEECHHHCCHHHHHHHHHHHCC--CCCCEEEEEECCC--HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 35999831544389999999986147--9756089985488--4647589998887710268999999999999999839
Q ss_pred H
Q ss_conf 9
Q gi|254780892|r 123 S 123 (133)
Q Consensus 123 ~ 123 (133)
.
T Consensus 196 i 196 (704)
T PRK08691 196 I 196 (704)
T ss_pred C
T ss_conf 8
No 419
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=22.66 E-value=61 Score=14.08 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=55.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 977999739989999999999988989999999799999997179--994899707899877389999614348897399
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL--LPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~--~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii 78 (133)
|++|||+=-=..-+-....+.++..++|..|.-..+....+.... ....+.+|..=++ .+.+.|+.. ++-|-
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~--al~~li~~~----d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVD--ALVALIKDF----DLVIN 74 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHH--HHHHHHHCC----CEEEE
T ss_conf 972899898666799999998578962999848888999987533466316994256758--899987257----78999
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 996389989999999769988997
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.+..+-+......|++.|. +|+.
T Consensus 75 ~~p~~~~~~i~ka~i~~gv-~yvD 97 (389)
T COG1748 75 AAPPFVDLTILKACIKTGV-DYVD 97 (389)
T ss_pred ECCCHHHHHHHHHHHHHCC-CEEE
T ss_conf 2870542999999998599-8897
No 420
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=22.60 E-value=61 Score=14.08 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=27.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH----------H------HHHHHHHHCCCCCEEE
Q ss_conf 79997399899999999999889899999997----------9------9999997179994899
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV----------C------EAREFCEKELLPNYLV 51 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g----------~------eAl~~~~~~~~pdlii 51 (133)
||||.=-+-.....|.+.|...|..+.+..+. . +++..+.++..||+||
T Consensus 1 rilitGa~GQlG~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vv 65 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSKPGRVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVV 65 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEE
T ss_conf 97887387567999999707888278643687776113365440622468899999852875376
No 421
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=22.57 E-value=61 Score=14.07 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=22.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE-EEEEC
Q ss_conf 977999739989999999999988989-99999
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFNDFGFM-VFEAT 32 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~~g~~-v~~a~ 32 (133)
||||||.=..=.+-..+.+.|-..|.+ |..+.
T Consensus 1 MKkILVTGg~GFIGs~Lv~~Ll~~~~~~v~~~d 33 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 996999378757999999999976998899982
No 422
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.55 E-value=61 Score=14.07 Aligned_cols=90 Identities=10% Similarity=0.053 Sum_probs=53.6
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 77999739989----9999999999889899999-------997999999971799948997078998773899996143
Q gi|254780892|r 2 DSLLLVDSSHI----VRKVGRHLFNDFGFMVFEA-------TSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 2 ~~ILiVDD~~~----~r~~l~~~L~~~g~~v~~a-------~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
+++-++.+|.. ....++..++..|.++... .+-...+..+.+ ..||+|++-..-++...++++.++..
T Consensus 145 k~vav~~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~D~s~~v~~l~~-~~pd~v~~~~~~~~~~~~~~~~~~~g 223 (344)
T cd06345 145 KTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKA-ADPDVIIAGFSGNVGVLFTQQWAEQK 223 (344)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 49999960724559999999999875397599999658976454999999986-59999999067436999999999759
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 488973999963899899999997
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGAR 94 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~ 94 (133)
. ..+++.+++............
T Consensus 224 ~--~~~~~~~~~~~~~~~~~~~~~ 245 (344)
T cd06345 224 V--PIPTIGISVEGNSPAFWKATN 245 (344)
T ss_pred C--CCCEEEEECCCCCHHHHHHHH
T ss_conf 9--988699974767888998777
No 423
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=22.54 E-value=61 Score=14.07 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=58.3
Q ss_pred HHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCC------CCCC--CHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 99999998898999-99997999999971799948997078------9987--738999961434889739999638998
Q gi|254780892|r 16 VGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDES------MEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDF 86 (133)
Q Consensus 16 ~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~------mP~~--~~l~~~ir~~~~~~~~pii~lT~~~~~ 86 (133)
-+.+..+..|.-+. .+++-++|......+ +|+|=+-+. -+.. +++++++.+ ..+|||.=-....+
T Consensus 83 ~lv~~i~~~~~l~MAD~st~eea~~A~~~G--~D~I~TTL~GYT~~t~~~~pD~~ll~~l~~----~~~pvIaEGri~tP 156 (192)
T pfam04131 83 SFIKRIKEKGQLAMADCSTFEEGLNAHKLG--VDIVGTTLSGYTGGSNPAEPDFQLVKTLSE----AGCFVIAEGRYNTP 156 (192)
T ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHCC--CCEEECCCCCCCCCCCCCCCCHHHHHHHHH----CCCCEEEECCCCCH
T ss_conf 999999981998899749999999999859--999982325578999999997899999986----89939985798999
Q ss_pred HHHHHHHHCCCCEEEEC-CCCHHHH
Q ss_conf 99999997699889976-9898999
Q gi|254780892|r 87 EKMIAGARAGANSFLLK-PFNRETL 110 (133)
Q Consensus 87 ~~~~~a~~~Ga~~yl~K-P~~~~~L 110 (133)
+...+++++||...++= -+++-.+
T Consensus 157 e~a~~a~~~GA~aVVVGsAITrP~~ 181 (192)
T pfam04131 157 ELAKKAIEIGADAVTVGSAITRLEE 181 (192)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 9999999839989998965379899
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.43 E-value=61 Score=14.06 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC-C-CCCCHHHHHHHHC--CCCCCCEEEEEECCCCHHHH
Q ss_conf 999999999889899999997999999971799948997078-9-9877389999614--34889739999638998999
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES-M-EGVLEFIAHVRQM--PLGTDVFVYYLLMEVDFEKM 89 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~-m-P~~~~l~~~ir~~--~~~~~~pii~lT~~~~~~~~ 89 (133)
.+.|+.+-+-+|.-+..+.+..+--+.+.+....|+|++|-- + |.-.....+++.. ...+.-.++++|+....++.
T Consensus 256 ~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl 335 (412)
T PRK05703 256 VEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDL 335 (412)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
T ss_conf 99999999971973798479999999998715899799968988978999999999998624887189997598998999
Q ss_pred HHHHH----CCCCEEEECCCCHHH
Q ss_conf 99997----699889976989899
Q gi|254780892|r 90 IAGAR----AGANSFLLKPFNRET 109 (133)
Q Consensus 90 ~~a~~----~Ga~~yl~KP~~~~~ 109 (133)
.+.++ .|.+.+|.--++...
T Consensus 336 ~~i~~~f~~~~~~~lI~TKlDEt~ 359 (412)
T PRK05703 336 KDIVKHFSRLPLDGLILTKLDETS 359 (412)
T ss_pred HHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 999998467999879997112899
No 425
>TIGR01929 menB naphthoate synthase; InterPro: IPR010198 This entry represents an enzyme, naphthoate synthase , MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB . The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity . Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process.
Probab=22.42 E-value=41 Score=15.12 Aligned_cols=41 Identities=15% Similarity=-0.034 Sum_probs=28.0
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCC-CHHHHHHHHHCCCCEE
Q ss_conf 7389999614348897399996389-9899999997699889
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSF 100 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~-~~~~~~~a~~~Ga~~y 100 (133)
.|++..+..-...++|-||+||+.+ .+.+-.+|+=+|.|.-
T Consensus 34 ~E~~~al~~aR~~~~iGVv~LtG~GPsPkdG~~AFCsGGDQ~ 75 (278)
T TIGR01929 34 DEIIRALDDAREDPDIGVVILTGAGPSPKDGDKAFCSGGDQK 75 (278)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCEE
T ss_conf 999999997137999627986176777888871265368523
No 426
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=22.36 E-value=61 Score=14.05 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=45.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH
Q ss_conf 779997399899999999999889899999997999999971799948997078998773
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~ 61 (133)
|++.||-.+..+-.=+..+|.+.|..|..+++-..-+....+ . -|+|+.-.-=|+...
T Consensus 29 k~vvVvGrS~~VG~Pla~lL~~~~atVt~~hs~t~~l~~~~~-~-ADIvI~a~G~p~~i~ 86 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH-D-ADVVVVGSPKPEKVP 86 (140)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-H-CCEEEECCCCCCCCC
T ss_conf 999999998124999999999788989994699959899852-3-499998168767278
No 427
>TIGR00730 TIGR00730 conserved hypothetical protein TIGR00730; InterPro: IPR005269 This family of conserved hypothetical proteins has no known function. .
Probab=22.35 E-value=61 Score=14.05 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHH----H-HCCCCCCCEEEEEECCCCHHHHHHHHH-CCCC-EEEE
Q ss_conf 7899877389999----6-143488973999963899899999997-6998-8997
Q gi|254780892|r 54 ESMEGVLEFIAHV----R-QMPLGTDVFVYYLLMEVDFEKMIAGAR-AGAN-SFLL 102 (133)
Q Consensus 54 ~~mP~~~~l~~~i----r-~~~~~~~~pii~lT~~~~~~~~~~a~~-~Ga~-~yl~ 102 (133)
+-||||+|...++ . .+-..-+-|||+.-..+..+-..+.++ .-.+ +|+.
T Consensus 127 v~~PGGfGTldEl~e~lT~~q~G~h~kpi~lf~~~g~f~~L~~~l~t~~~~~G~~~ 182 (205)
T TIGR00730 127 VAMPGGFGTLDELFEVLTWAQLGIHDKPIILFNVEGHFDGLLEWLKTSLIQEGFIS 182 (205)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88688974288999999877217468854687273346888999876311036505
No 428
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=22.24 E-value=62 Score=14.03 Aligned_cols=49 Identities=8% Similarity=-0.110 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCCC-----HHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 9799999997179994899707899877-----3899996143488973999963
Q gi|254780892|r 33 SVCEAREFCEKELLPNYLVIDESMEGVL-----EFIAHVRQMPLGTDVFVYYLLM 82 (133)
Q Consensus 33 ~g~eAl~~~~~~~~pdlii~D~~mP~~~-----~l~~~ir~~~~~~~~pii~lT~ 82 (133)
+-.++++.+.+......|+++++-|||. ++...++..... .-||+...+
T Consensus 25 ~i~~~l~~A~~d~~Vkavvl~InSpGG~~~~s~~i~~~i~~~~~~-~KPVva~~~ 78 (211)
T cd07019 25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAA-GKPVVVSAG 78 (211)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 999999999528997389999769697689999999999998646-997999977
No 429
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.23 E-value=62 Score=14.03 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=25.3
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 7399996389989999999769988997698989999999999
Q gi|254780892|r 75 VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 75 ~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
+.+-++|+++......++...=.++|+.+ +.++|.+.++.+
T Consensus 43 LsFCILTANsSA~~~~~~q~~lG~gfly~--~~eEL~e~Lk~~ 83 (210)
T COG1059 43 LSFCILTANSSATMGLRAQNELGDGFLYL--SEEELREKLKEV 83 (210)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHH
T ss_conf 89986046611777999999863331028--899999999981
No 430
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=22.09 E-value=62 Score=14.02 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=33.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8897399996389989999999769988997698989999999999999
Q gi|254780892|r 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 (133)
Q Consensus 72 ~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~ 120 (133)
...+|||. |..+... +....|.++|+.+|-+.++|..++..+.+.
T Consensus 285 a~G~pvI~-s~~gg~~---e~i~~g~~G~l~~~~d~~~la~~i~~l~~l 329 (353)
T cd03811 285 ALGTPVVA-TDCPGPR---EILEDGENGLLVPVGDEAALAAAALALLDL 329 (353)
T ss_pred HCCCCEEE-CCCCCHH---HHHCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 80998999-4899848---984489838997899999999999999851
No 431
>PRK07105 pyridoxamine kinase; Validated
Probab=22.02 E-value=62 Score=14.01 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=19.6
Q ss_pred CCEEEEECCCHHHHH----HHHHHHHHCCCEEE
Q ss_conf 977999739989999----99999998898999
Q gi|254780892|r 1 MDSLLLVDSSHIVRK----VGRHLFNDFGFMVF 29 (133)
Q Consensus 1 m~~ILiVDD~~~~r~----~l~~~L~~~g~~v~ 29 (133)
|||||++.|...... .--..++..|+++.
T Consensus 4 mK~il~i~d~~~~G~agl~A~i~~lsa~G~~~~ 36 (284)
T PRK07105 4 MKRVAAAHDLSGFGRVALTASIPIMSSMGLQVC 36 (284)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 686999858787467799999999998699540
No 432
>PRK13136 consensus
Probab=21.91 E-value=63 Score=13.99 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=27.5
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCC-----HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 73899996143488973999963899-----899999997699889976989899
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVD-----FEKMIAGARAGANSFLLKPFNRET 109 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~-----~~~~~~a~~~Ga~~yl~KP~~~~~ 109 (133)
+++++.+|+ ..++|+++||-++. .+-..++.++|+++.|.--+-.++
T Consensus 77 ~~~v~~~r~---~~~~pivlM~Y~N~i~~~G~~f~~~~~~~GvdGlIipDLP~eE 128 (253)
T PRK13136 77 LTLITSFRQ---HSEIPIILFTYFNPLLAAGDKIYQQMKSAGVDGCLVVDLPVEE 128 (253)
T ss_pred HHHHHHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHH
T ss_conf 999998225---7898889986517999979999999997498720067899777
No 433
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=21.84 E-value=63 Score=13.98 Aligned_cols=63 Identities=19% Similarity=0.058 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9999999999889899999997------9999999717999489970789987738999961434889739999
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVFEATSV------CEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~~a~~g------~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~l 80 (133)
..+.+...+...||++..+.+. .+.++.+.+.. +|.+|+--.-+...+....+++ ..+|+|.+
T Consensus 17 ~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~-vDgiIi~~~~~~~~~~~~~~~~----~~ipvV~~ 85 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARG-VDGIIIAPSDLTAPTIVKLARK----AGIPVVLV 85 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHH----CCCCEEEE
T ss_conf 999999999986998999979999899999999999769-9999996798886899999997----59979998
No 434
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=21.82 E-value=63 Score=13.98 Aligned_cols=19 Identities=16% Similarity=-0.118 Sum_probs=7.4
Q ss_pred EEECCCCHHHHHHHHHCCC
Q ss_conf 9963899899999997699
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGA 97 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga 97 (133)
+.|+.+-.+.....-++|+
T Consensus 114 iTTG~S~~e~i~~l~~~G~ 132 (170)
T PRK13811 114 TTSGGSALYGIEQLRSAGA 132 (170)
T ss_pred ECCCCCHHHHHHHHHHCCC
T ss_conf 4578118999999998899
No 435
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=21.79 E-value=63 Score=13.98 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEEC-CCCCCC-C--HHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 99999999998898999-999979999999717999489970-789987-7--389999614348897399996389989
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVID-ESMEGV-L--EFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D-~~mP~~-~--~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
..+.+.......|.++. ++++.+|.-..+.. . +++|=+. .++-.. . +...++... ...+..+|.=||-...+
T Consensus 109 ~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~-~-a~iIGINnRdL~t~~vd~~~~~~L~~~-ip~~~~~IsESGI~~~~ 185 (217)
T cd00331 109 QLKELYELARELGMEVLVEVHDEEELERALAL-G-AKIIGINNRDLKTFEVDLNTTERLAPL-IPKDVILVSESGISTPE 185 (217)
T ss_pred HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC-C-CCEEEECCCCCHHCEECHHHHHHHHHH-CCCCCEEEECCCCCCHH
T ss_conf 99999999999498279885899999999957-9-987842167712303478999999964-89898899827999999
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999999769988997
Q gi|254780892|r 88 KMIAGARAGANSFLL 102 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl~ 102 (133)
+.....+.|++.||.
T Consensus 186 di~~l~~~G~d~~LI 200 (217)
T cd00331 186 DVKRLAEAGADAVLI 200 (217)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999879999998
No 436
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=21.46 E-value=64 Score=13.94 Aligned_cols=84 Identities=18% Similarity=0.016 Sum_probs=54.9
Q ss_pred HHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC-------CHHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 99999998898999-999979999999717999489970789987-------7389999614348897399996389989
Q gi|254780892|r 16 VGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV-------LEFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 16 ~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-------~~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
.+.+.++..|..|. .+.|.++|...... . +|.|+.-=.=.|| ..+...+.......++|||.=-+-.+-.
T Consensus 128 ~~v~~~~~~G~~v~~~v~s~~~A~~a~~~-G-~D~iV~qG~eAGGH~G~~~~~~~~~L~~~v~~~~~iPvIaAGGI~dg~ 205 (330)
T pfam03060 128 DVIERLKESGTKVIPTVSSAKEARKAEAA-G-ADAVVAQGPEAGGHRGTEVGTGTFLLVPTVVDAVDIPVIAAGGIADGR 205 (330)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHC-C-CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 99999998799899981899999999981-9-998999667667778887773077778999987169778526628999
Q ss_pred HHHHHHHCCCCEEE
Q ss_conf 99999976998899
Q gi|254780892|r 88 KMIAGARAGANSFL 101 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl 101 (133)
....++..||+...
T Consensus 206 ~iaaalalGA~gV~ 219 (330)
T pfam03060 206 GIAAALALGAEGVQ 219 (330)
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99999967998999
No 437
>pfam00656 Peptidase_C14 Caspase domain.
Probab=21.38 E-value=64 Score=13.93 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH-----HHHHHHHHHCCC-CCEEE
Q ss_conf 99999999999889899999997-----999999971799-94899
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVFEATSV-----CEAREFCEKELL-PNYLV 51 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~~a~~g-----~eAl~~~~~~~~-pdlii 51 (133)
...+.+++.|+..||.|....+. .++++.+.+... .|.++
T Consensus 22 ~Da~~l~~~l~~lgF~v~~~~n~t~~~~~~~l~~~~~~~~~~d~~v 67 (230)
T pfam00656 22 NDAEALAELLQRLGFEVEVIDDLTAEEIRRALREFAKRADPGDSFV 67 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999999988998999606998999999999985477898899
No 438
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=21.35 E-value=63 Score=13.98 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=26.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHH
Q ss_conf 9973998999999999998898999999979
Q gi|254780892|r 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVC 35 (133)
Q Consensus 5 LiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~ 35 (133)
++||+.+-...-+..++..-||++.+-.-|+
T Consensus 7 vLVen~pGVL~RVaGLFsrRGyNI~SL~Vg~ 37 (76)
T PRK06737 7 LVIHNDPSVLLRISGIFARRGYYISSLNLNE 37 (76)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 9981787688987778621665711256746
No 439
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=21.34 E-value=64 Score=13.92 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=50.0
Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCEEEE-ECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 99973998999999999998-8989999-999799999997179994899707899877389999614348897399996
Q gi|254780892|r 4 LLLVDSSHIVRKVGRHLFND-FGFMVFE-ATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLL 81 (133)
Q Consensus 4 ILiVDD~~~~r~~l~~~L~~-~g~~v~~-a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT 81 (133)
|.+|==-..-+..+..+... .++++.. ++...+..+.+.+.. ++ |....+-..+ .. ...+.-+|...
T Consensus 3 i~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~--~~-------~~~~~~~~~l-~~-~~iD~v~I~tp 71 (120)
T pfam01408 3 VGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESF--GV-------PAYSDLEELL-AD-PDVDAVSVATP 71 (120)
T ss_pred EEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH--CC-------CEECCHHHHH-HC-CCCCEEEECCC
T ss_conf 99990779999999999855999789999829999999999983--99-------6788699997-37-78898999087
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHH
Q ss_conf 389989999999769988997698--989999999
Q gi|254780892|r 82 MEVDFEKMIAGARAGANSFLLKPF--NRETLRFAM 114 (133)
Q Consensus 82 ~~~~~~~~~~a~~~Ga~~yl~KP~--~~~~L~~~i 114 (133)
.....+....++++|-.=|+.||+ +.++....+
T Consensus 72 ~~~H~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~ 106 (120)
T pfam01408 72 PGLHFELALAALEAGKHVLVEKPLATTVEEAKELV 106 (120)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHH
T ss_conf 46189999999981998999689819999999999
No 440
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.25 E-value=65 Score=13.91 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=57.4
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 779997-3998---999999999998898999999-------97999999971799948997078998773899996143
Q gi|254780892|r 2 DSLLLV-DSSH---IVRKVGRHLFNDFGFMVFEAT-------SVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMP 70 (133)
Q Consensus 2 ~~ILiV-DD~~---~~r~~l~~~L~~~g~~v~~a~-------~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~ 70 (133)
||+-++ +|+. ..+..++..++..|.++.... +-...+..+.+ ..||+|++-..-++..-+++++++.
T Consensus 139 kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~-~~pD~V~~~~~~~~~~~~~~q~~~~- 216 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKA-AGADAIIIVGNGPEGAQIANGMAKL- 216 (347)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHC-
T ss_conf 66999970763668999999999986598675788407998348999999986-6999999947761799999999971-
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHCC
Q ss_conf 48897399996389989999999769
Q gi|254780892|r 71 LGTDVFVYYLLMEVDFEKMIAGARAG 96 (133)
Q Consensus 71 ~~~~~pii~lT~~~~~~~~~~a~~~G 96 (133)
.-+.|++..++.........+-..+
T Consensus 217 -G~~~~~~g~~~~~~~~~~~~~g~~a 241 (347)
T cd06335 217 -GWKVPIISHWGLSGGNFIEGAGPAA 241 (347)
T ss_pred -CCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf -9997679414777589998656641
No 441
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=21.24 E-value=65 Score=13.91 Aligned_cols=84 Identities=15% Similarity=0.024 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCH---H----HHHHHHHHCC-CCCEEEEC----CCCC---C-----C----CHHHHHHHH
Q ss_conf 9999999999889899999997---9----9999997179-99489970----7899---8-----7----738999961
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVFEATSV---C----EAREFCEKEL-LPNYLVID----ESME---G-----V----LEFIAHVRQ 68 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~~a~~g---~----eAl~~~~~~~-~pdlii~D----~~mP---~-----~----~~l~~~ir~ 68 (133)
+.+-+..=++..||+|....|| . +|++.+++.. .|-+|.+- ..=| | | .+-.+..|+
T Consensus 193 F~Edv~~RFeA~gW~Vl~~~DG~~D~~~I~~Ai~~Ak~~~dKPTlI~v~T~IGfGsp~~~g~~~~HGapL~~~~~~~~~~ 272 (675)
T TIGR00232 193 FSEDVKKRFEAYGWEVLEVEDGNHDLEAIAAAIEEAKASKDKPTLIEVKTTIGFGSPNKEGTEGVHGAPLGKEEVKLTKK 272 (675)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 10014534410585585405745307999999999873078971689987750368777888667888988689999999
Q ss_pred CCCCCCCE-EEEEECCCCHHHHHHHHHCCC
Q ss_conf 43488973-999963899899999997699
Q gi|254780892|r 69 MPLGTDVF-VYYLLMEVDFEKMIAGARAGA 97 (133)
Q Consensus 69 ~~~~~~~p-ii~lT~~~~~~~~~~a~~~Ga 97 (133)
.-.+..-| +. +......-....+.+.|+
T Consensus 273 ~~~~~~~~sF~-~P~evyd~~~~~v~e~G~ 301 (675)
T TIGR00232 273 NLGWNYNPSFE-VPQEVYDHFKKTVKERGA 301 (675)
T ss_pred HHCCCCCCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 71888777753-765688899999998657
No 442
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=21.20 E-value=65 Score=13.90 Aligned_cols=58 Identities=24% Similarity=0.139 Sum_probs=37.5
Q ss_pred HHHHCCCCCEEEECCCCC---CCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 997179994899707899---87738999961434889739999638998999999976998899
Q gi|254780892|r 40 FCEKELLPNYLVIDESME---GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFL 101 (133)
Q Consensus 40 ~~~~~~~pdlii~D~~mP---~~~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl 101 (133)
.+-+... |+|++|.--- ++.+.++.+|.. ++++|||. -.-...+-....+++||+..-
T Consensus 230 ~Lv~aGv-DvivIDtAhGhs~~vi~~ik~ik~~--~p~~~iIa-GNVaT~e~a~~Li~aGAD~vK 290 (467)
T pfam00478 230 ALVEAGV-DVIVIDSAHGHSEYVLEMIKWIKKK--YPDLDVIA-GNVVTAEAARELIDAGADAVK 290 (467)
T ss_pred HHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHC--CCCCCEEE-EEECCHHHHHHHHHHCCCEEE
T ss_conf 9987699-8899734454418899999998740--78773785-100589999999970777577
No 443
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.99 E-value=66 Score=13.88 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=29.8
Q ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 7389999614348897399996389989999999769988997
Q gi|254780892|r 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 (133)
Q Consensus 60 ~~l~~~ir~~~~~~~~pii~lT~~~~~~~~~~a~~~Ga~~yl~ 102 (133)
.++.+.+|+. -.+|++...+..+.+...++++.|..|++.
T Consensus 270 ~~~~~~ik~~---~~~pvi~~G~i~~~~~a~~~l~~g~~D~V~ 309 (327)
T cd02803 270 LELAEKIKKA---VKIPVIAVGGIRDPEVAEEILAEGKADLVA 309 (327)
T ss_pred HHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCCHHH
T ss_conf 8999999997---698199989989999999999889931258
No 444
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.95 E-value=66 Score=13.87 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=53.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH-HHHHHH-CCCCCEEEE--CCCCCCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 79997399899999999999889899999997999-999971-799948997--07899877389999614348897399
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEA-REFCEK-ELLPNYLVI--DESMEGVLEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eA-l~~~~~-~~~pdlii~--D~~mP~~~~l~~~ir~~~~~~~~pii 78 (133)
+||+|=..+..-..++..++..|++.....+|.+- ...+.. -..+|+||+ |+.=.++ ...++..-...++|++
T Consensus 1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l~~~i~~aDlVI~~td~vsH~~---~~~vK~~akk~~~p~v 77 (96)
T pfam10087 1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKIPALLKKADLVIVFTDCVSHDA---MWRVKEEAKKRGIPVV 77 (96)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCHHH---HHHHHHHHHHHCCCEE
T ss_conf 9999958556789999999983998999658987335567750589888999717668799---9999999998499789
Q ss_pred EEECCCCHHHHHHHH
Q ss_conf 996389989999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGA 93 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~ 93 (133)
++.+.+-. ...+++
T Consensus 78 ~~~s~s~~-~l~~~l 91 (96)
T pfam10087 78 FSRSRSLS-ALERAL 91 (96)
T ss_pred EECCCCHH-HHHHHH
T ss_conf 97687499-999999
No 445
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.91 E-value=66 Score=13.87 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=6.4
Q ss_pred HHHHHCCCCEEE
Q ss_conf 999976998899
Q gi|254780892|r 90 IAGARAGANSFL 101 (133)
Q Consensus 90 ~~a~~~Ga~~yl 101 (133)
..+.+.|+++++
T Consensus 173 ~~~~~~g~dgiv 184 (296)
T cd04740 173 RAAEEAGADGLT 184 (296)
T ss_pred HHHHHCCCCEEE
T ss_conf 999976998899
No 446
>PRK06823 ornithine cyclodeaminase; Validated
Probab=20.71 E-value=66 Score=13.84 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=35.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 7799973998999999999998898999999979999999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC 41 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~ 41 (133)
++|.|.+-++..+..++..++..|+++..+.+.++|+.-+
T Consensus 154 ~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~eav~~A 193 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAA 193 (315)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHC
T ss_conf 0999946997999999999986199079948999997427
No 447
>TIGR01460 HAD-SF-IIA HAD-superfamily hydrolase, subfamily IIA; InterPro: IPR006357 These sequences form one of the structural subclass of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs . The classes are defined based on the location and the observed or predicted fold of a so-called "capping domain" , or the absence of such a domain. Class I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Class II consists of sequences in which the capping domain is found between the second and third motifs. Class III sequences have no capping domain in either of these positions. The Class IIA capping domain is predicted to consist of a mixed alpha-beta fold with the basic pattern: Helix-Helix-Helix-Sheet-Helix-Loop-Sheet-Helix-Sheet-Helix. Presently, this subfamily covers the eukaryotic phosphoglycolate phosphatase, as well as four further subfamilies covering closely related sequences in eukaryotes, in Gram-positive bacteria and in Gram-negative bacteria. The Escherichia coli NagD gene and the Bacillus subtilis AraL gene are members of this subfamily but are not members of the any of the presently defined equivalogs within it. NagD is part of the NAG operon responsible for N-acetylglucosamine metabolism . Genes from several organisms have been annotated as NagD, or NagD-like. However, without data on the presence of other members of this pathway, (such as in the case of Yersinia pestis) these assignments should not be given great weight. The AraL gene is similar and is part of the L-arabinose operon . A gene from Halobacterium has been annotated as AraL, but no other Ara operon genes have been annotated. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant. The structure of NagD from Escherichia coli K12 has been reported and its activity against various substrates determined. It has high specificity for nucleotide monophosphates, and in particular UMP and GMP. In the context of its occurrence in the NAG operon, it may well be involved in the recycling of cell wall metabolites . ; GO: 0016787 hydrolase activity, 0008152 metabolic process.
Probab=20.70 E-value=67 Score=13.84 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 9877389999614348897399996389
Q gi|254780892|r 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEV 84 (133)
Q Consensus 57 P~~~~l~~~ir~~~~~~~~pii~lT~~~ 84 (133)
||..+.+..++.....-.+|++++|..+
T Consensus 18 pGA~~~l~~l~~~gG~L~~~v~f~TN~~ 45 (304)
T TIGR01460 18 PGAVEALARLRAKGGALKKPVVFLTNNS 45 (304)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf 2278999999828995675488986799
No 448
>PRK09213 purine operon repressor; Provisional
Probab=20.69 E-value=67 Score=13.84 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=9.9
Q ss_pred HHHHHHHHHHCCCEEEE
Q ss_conf 99999999988989999
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFE 30 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~ 30 (133)
..++++.|+.+|+-..+
T Consensus 44 l~iik~~f~~~g~G~le 60 (274)
T PRK09213 44 LVIIKETFEKQGIGTLE 60 (274)
T ss_pred HHHHHHHHHHCCCCEEE
T ss_conf 99999999873985499
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.61 E-value=67 Score=13.83 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC-C-C-CC--CHHHHHHHHCCCCCCCEEEEEECCCCHHH
Q ss_conf 999999999889899999997999999971799948997078-9-9-87--73899996143488973999963899899
Q gi|254780892|r 14 RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES-M-E-GV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEK 88 (133)
Q Consensus 14 r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~-m-P-~~--~~l~~~ir~~~~~~~~pii~lT~~~~~~~ 88 (133)
.+.|+.+-+-.|.-+..|.+..+--..+.+....|+|++|=- + | |- .+.+..+... ..+.-.++++|+....+.
T Consensus 222 vEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~-~~~~~~~LVLsat~~~~d 300 (404)
T PRK06995 222 HEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHIVLIDTVGMSQRDRMVSEQIAMLHGA-GAPVQRLLLLNATSHGDT 300 (404)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH
T ss_conf 9999999987595599959999999999970899999980999897688899999999735-788528999779899999
Q ss_pred HHHHH----HCCCCEEEECCCCHHHHH
Q ss_conf 99999----769988997698989999
Q gi|254780892|r 89 MIAGA----RAGANSFLLKPFNRETLR 111 (133)
Q Consensus 89 ~~~a~----~~Ga~~yl~KP~~~~~L~ 111 (133)
..+.. ..|.+.+|.--++...-+
T Consensus 301 l~~i~~~f~~~~~~~~I~TKLDEt~~~ 327 (404)
T PRK06995 301 LNEVVQAYRGPGLAGCILTKLDEAASL 327 (404)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCH
T ss_conf 999999844699983998304067972
No 450
>TIGR00110 ilvD dihydroxy-acid dehydratase; InterPro: IPR004404 Two dehydratases, dihydroxy-acid dehydratase (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (gene edd) have been shown to be evolutionary related . Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyzes the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster . This family represents dihydroxy-acid dehydratase (DAD). It contains a catalytically essential [4Fe-4S] cluster and catalyses the fourth step in valine and isoleucine biosynthesis.; GO: 0004160 dihydroxy-acid dehydratase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=20.47 E-value=52 Score=14.46 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=21.1
Q ss_pred CCEEE----ECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 94899----707899877389999614348897399996389
Q gi|254780892|r 47 PNYLV----IDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEV 84 (133)
Q Consensus 47 pdlii----~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~~~ 84 (133)
+|-++ ||=.||||+ ...+|.+ +|.|++|+-.
T Consensus 97 ~Dg~v~Ip~CDKi~PGml--MAa~RlN-----iP~I~V~GGP 131 (601)
T TIGR00110 97 FDGLVCIPSCDKITPGML--MAALRLN-----IPSIFVTGGP 131 (601)
T ss_pred CCCEEEECCCCCCHHHHH--HHHHHCC-----CCEEEEECCC
T ss_conf 693798156897337999--9999718-----9889972887
No 451
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=20.46 E-value=67 Score=13.81 Aligned_cols=82 Identities=17% Similarity=0.049 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 998999999999998898999999979999999717999489970789987-7389999614348897399996389989
Q gi|254780892|r 9 SSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 9 D~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~-~~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
-+-.....+...|...|..+....+....+..+.. ..|+-+++=+...|- .++....+. -+..+.|||.+|......
T Consensus 140 ~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~-~~~~Dv~i~iS~sG~t~e~i~~a~~-ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 140 SSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLAL-LTPGDVVIAISFSGYTREIVEAAEL-AKERGAKVIAITDSADSP 217 (281)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH-CCCCCEEEEEECCCCCHHHHHHHHH-HHHCCCEEEEEECCCCCC
T ss_conf 35999999999999819966996684179999983-8999889998489996899999999-997799299983999993
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780892|r 88 KMIAG 92 (133)
Q Consensus 88 ~~~~a 92 (133)
....|
T Consensus 218 la~~A 222 (281)
T COG1737 218 LAKLA 222 (281)
T ss_pred HHHHC
T ss_conf 66654
No 452
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=20.44 E-value=67 Score=13.81 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCEEEEECCCHHHHH----HHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCCEEEE
Q ss_conf 977999739989999----999999988989999999---------7999999971799948997
Q gi|254780892|r 1 MDSLLLVDSSHIVRK----VGRHLFNDFGFMVFEATS---------VCEAREFCEKELLPNYLVI 52 (133)
Q Consensus 1 m~~ILiVDD~~~~r~----~l~~~L~~~g~~v~~a~~---------g~eAl~~~~~~~~pdlii~ 52 (133)
+||+|||-|...... -+...|+..|.++..+.+ ..++++.+.. ..||.||.
T Consensus 482 ~kralIVTD~~~~~~G~vd~v~~~L~~~gi~~~vFd~V~pdPt~~~V~~G~~~~~~-~~~D~IIa 545 (862)
T PRK13805 482 KKRAFIVTDRGMVELGYVDKVTDVLRANGVETEVFSEVEPDPTLSTVRKGAELMRS-FKPDTIIA 545 (862)
T ss_pred CCEEEEECCHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 97799987851876788999999999869839996698999397999999999986-49999999
No 453
>CHL00194 ycf39 Ycf39; Provisional
Probab=20.41 E-value=68 Score=13.80 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=36.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 79997399899999999999889899999997999999971799948997078998
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~ 58 (133)
+|||+=-.=.....+.+.|...|++|.++.-..+....+.... .+++..|+.-|+
T Consensus 2 ~ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~G-ve~v~gDl~dpe 56 (319)
T CHL00194 2 SLLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWG-AELVYGDLSLPE 56 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCC-CEEEEECCCCHH
T ss_conf 7999899858999999999968890899957867632342159-679994278877
No 454
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.32 E-value=68 Score=13.79 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=63.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHH---------------------CCCCCEEEECCCC--
Q ss_conf 779997399899999999999889899999997--999999971---------------------7999489970789--
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV--CEAREFCEK---------------------ELLPNYLVIDESM-- 56 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g--~eAl~~~~~---------------------~~~pdlii~D~~m-- 56 (133)
++|.||-..=.......++|+..||+|...... .+|-+.+.. ...++.+++|+.-
T Consensus 99 ~~i~IIGG~G~mG~~F~~~f~~sGy~V~ild~~dw~~~~~~~~~advViVsVPI~~T~~VI~~l~~l~~~~lL~DiTSvK 178 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEKDDWDRADDILADAGMVIVSVPIHLTEEVIEKLPPLPEDCILVDLTSVK 178 (374)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCEEEECHHCC
T ss_conf 71799807982779999999967987996164445348988717998999814588999998577899986898610042
Q ss_pred --C--CCCHH--HHHHHHCCC-CCCCE------EEEEECCCCHHHHHH----HHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf --9--87738--999961434-88973------999963899899999----99769988997698989999999999
Q gi|254780892|r 57 --E--GVLEF--IAHVRQMPL-GTDVF------VYYLLMEVDFEKMIA----GARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 57 --P--~~~~l--~~~ir~~~~-~~~~p------ii~lT~~~~~~~~~~----a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
| .|.+. ..-+-.||- +|++| ||++.+. ..+.... .-.-||.=+..-|-.++.....++-+
T Consensus 179 ~~Pl~aMl~~h~gpV~GlHPMFGP~v~sl~~QvVV~c~gr-~~e~~~wl~~~~~~~Ga~l~~~~~~eHD~~Ma~VQgL 255 (374)
T PRK11199 179 NGPLQAMLAAHSGPVLGLHPMFGPDVGSLAKQVVVVCDGR-QPEAYQWLLEQIQIWGARLHRISAVEHDQAMAFIQAL 255 (374)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHH
T ss_conf 7899999985689850227787999644478769988999-8377899999999848789986888888997999999
No 455
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=20.30 E-value=68 Score=13.79 Aligned_cols=18 Identities=6% Similarity=0.183 Sum_probs=8.1
Q ss_pred ECCCHHHHHHHHHHHHHC
Q ss_conf 739989999999999988
Q gi|254780892|r 7 VDSSHIVRKVGRHLFNDF 24 (133)
Q Consensus 7 VDD~~~~r~~l~~~L~~~ 24 (133)
..|-..++...+.+....
T Consensus 32 lGD~El~~~~a~~la~~~ 49 (178)
T PRK07322 32 LGDTELTEAAAEALAPRL 49 (178)
T ss_pred CCCHHHHHHHHHHHHHHC
T ss_conf 187899999999999767
No 456
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.23 E-value=68 Score=13.78 Aligned_cols=62 Identities=3% Similarity=0.069 Sum_probs=42.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCCEEEECCCCCCCC-HHHHHHH
Q ss_conf 79997399899999999999889899--99999799999997179994899707899877-3899996
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMV--FEATSVCEAREFCEKELLPNYLVIDESMEGVL-EFIAHVR 67 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v--~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~-~l~~~ir 67 (133)
+|.-||-++...+..++.|...|+.- ....+|.+++.. +..+|.|++.--.|... .+..+++
T Consensus 103 ~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~~---~apfD~Iiv~aa~~~iP~~l~~qL~ 167 (214)
T PRK13942 103 KVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYEE---NAPYDRIYVTAAGPDIPKPLLEQLK 167 (214)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCCCEEEEEECCCCCCHHHHHHCC
T ss_conf 5799971799999999999863768758985675667844---5981279998517657899999628
No 457
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=20.21 E-value=68 Score=13.78 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECC---HHHHHHHHHHCCCCCEEEECCCCCCCC---HHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 9999999999988989999999---799999997179994899707899877---3899996143488973999963899
Q gi|254780892|r 12 IVRKVGRHLFNDFGFMVFEATS---VCEAREFCEKELLPNYLVIDESMEGVL---EFIAHVRQMPLGTDVFVYYLLMEVD 85 (133)
Q Consensus 12 ~~r~~l~~~L~~~g~~v~~a~~---g~eAl~~~~~~~~pdlii~D~~mP~~~---~l~~~ir~~~~~~~~pii~lT~~~~ 85 (133)
.-...+...|+..||++..... .++-++.+.+ ..||+|-+...+-... ..+..+++. ..+++||++=-....
T Consensus 14 ~g~~~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~-~~~dvVgiS~~~~~~~~~~~~~~~~~~~-~~~~v~vv~GG~~~t 91 (125)
T cd02065 14 IGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-EDADVVGLSALSTTHMEAMKLVIEALKE-LGIDIPVVVGGAHPT 91 (125)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCC
T ss_conf 88999999999789989989998899999999986-0899999852113018999999999996-799875997588798
Q ss_pred HHH
Q ss_conf 899
Q gi|254780892|r 86 FEK 88 (133)
Q Consensus 86 ~~~ 88 (133)
...
T Consensus 92 ~~~ 94 (125)
T cd02065 92 ADP 94 (125)
T ss_pred CCH
T ss_conf 673
No 458
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=20.11 E-value=69 Score=13.77 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=25.8
Q ss_pred CEEEECCCCC---------CC-----CHHHHHHHHCCCCCCCEEEEEECCC-CHHHHHHHH-HCCCCEEEE
Q ss_conf 4899707899---------87-----7389999614348897399996389-989999999-769988997
Q gi|254780892|r 48 NYLVIDESME---------GV-----LEFIAHVRQMPLGTDVFVYYLLMEV-DFEKMIAGA-RAGANSFLL 102 (133)
Q Consensus 48 dlii~D~~mP---------~~-----~~l~~~ir~~~~~~~~pii~lT~~~-~~~~~~~a~-~~Ga~~yl~ 102 (133)
+++++|+.-| |. .++...+...+ ++-|+++.-..+ ......+.+ +.|.+-|-.
T Consensus 13 ~~~liDVR~~~E~~~~hI~gai~iP~~~l~~~~~~l~--k~~~ivv~C~~G~rS~~aa~~L~~~G~~v~~l 81 (90)
T cd01524 13 GVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNELP--KDKEIIVYCAVGLRGYIAARILTQNGFKVKNL 81 (90)
T ss_pred CEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9899979878999559568874685077999999861--58709998899805999999999869988996
No 459
>pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3.
Probab=20.05 E-value=69 Score=13.76 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=13.8
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 98999999979999999717999489970
Q gi|254780892|r 25 GFMVFEATSVCEAREFCEKELLPNYLVID 53 (133)
Q Consensus 25 g~~v~~a~~g~eAl~~~~~~~~pdlii~D 53 (133)
+.++..+.+.++++.++.++.. |+++.|
T Consensus 132 ~~~i~~~~~~~~~l~~L~~gr~-D~~i~~ 159 (224)
T pfam00497 132 GAEIVLYDDQAEALQALAAGRV-DAVVAD 159 (224)
T ss_pred CCEEEEECCHHHHHHHHHCCCE-EEEEEC
T ss_conf 4516995427888889874976-899957
No 460
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=20.03 E-value=69 Score=13.75 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCHHHHHHHHH-CCCC--EEEECC----CCHHHHHHH
Q ss_conf 973999963899899999997-6998--899769----898999999
Q gi|254780892|r 74 DVFVYYLLMEVDFEKMIAGAR-AGAN--SFLLKP----FNRETLRFA 113 (133)
Q Consensus 74 ~~pii~lT~~~~~~~~~~a~~-~Ga~--~yl~KP----~~~~~L~~~ 113 (133)
+-+++.+||-++++.-.+.++ .|+. +++.=| |+.+.+...
T Consensus 221 ~~~v~a~sGIanP~~F~~~L~~~g~~i~~~~~f~DHh~y~~~dl~~i 267 (318)
T pfam02606 221 GKRVLAFAGIGNPQRFFDTLRALGLEVVATLAFPDHHPFTAADLAFL 267 (318)
T ss_pred CCEEEEEEECCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHH
T ss_conf 98489999647879999999976987878677788777999999999
No 461
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.02 E-value=69 Score=13.75 Aligned_cols=82 Identities=13% Similarity=0.198 Sum_probs=44.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCEEEECCCCC-CCCHHHHHHHHCCCCCCCEEEE
Q ss_conf 779997399899999999999889-89999999799999997179994899707899-8773899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME-GVLEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g-~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP-~~~~l~~~ir~~~~~~~~pii~ 79 (133)
+-|=|.||+..-|-. +......| |+.... -.+--++.+. ...|||||.|-.-- +.+.-+++| -|.|+
T Consensus 69 ~PVGIADDnk~krI~-k~Vr~ki~~ytSVGT-RsQPslE~Is-~LKPDLIIAD~sRHk~vy~eLkKI--------APTi~ 137 (310)
T COG4594 69 TPVGIADDNKKKRIL-KDVRDKIDPYTSVGT-RSQPSLEAIS-ALKPDLIIADSSRHKKVYKELKKI--------APTIA 137 (310)
T ss_pred EEEEECCCCHHHHHH-HHHHHHCCCCCCCCC-CCCCCHHHHH-CCCCCEEEECCHHHHHHHHHHHHH--------CCEEE
T ss_conf 123311686165656-999853477424467-7898778886-059876982304567799999742--------65467
Q ss_pred EEC-CCCHHHHHHHHH
Q ss_conf 963-899899999997
Q gi|254780892|r 80 LLM-EVDFEKMIAGAR 94 (133)
Q Consensus 80 lT~-~~~~~~~~~a~~ 94 (133)
+-+ ..+-..-.+++.
T Consensus 138 LkS~~~dY~eni~s~~ 153 (310)
T COG4594 138 LKSRNEDYQENIDSFK 153 (310)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 5046753888889999
Done!