HHsearch results for GI: 254780892 and protein with PDBid: 2jk1_A

>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.95  E-value=2.1e-26  Score=176.39  Aligned_cols=126  Identities=26%  Similarity=0.333  Sum_probs=111.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEE
Q ss_conf             77999739989999999999988989999999799999997179994899707899877--3899996143488973999
Q gi|254780892|r    2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYY   79 (133)
Q Consensus         2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~   79 (133)
                      .+||||||++.+|..++..|+. ||+|.+|.||++|++.+.++ .||+|++|++||||.  ++++++|+.  .+++|+|+
T Consensus         2 P~ILiVDDd~~~~~~l~~~L~~-g~~v~~a~~~~~al~~~~~~-~~dlvl~D~~mP~~~G~ell~~ir~~--~~~~~vI~   77 (139)
T 2jk1_A            2 PAILLVDDEPHSLAAMKLALED-DFDVLTAQGAEAAIAILEEE-WVQVIICDQRMPGRTGVDFLTEVRER--WPETVRII   77 (139)
T ss_dssp             CEEEEECSSHHHHHHHHHHHTT-TSCEEEESSHHHHHHHHHHS-CEEEEEEESCCSSSCHHHHHHHHHHH--CTTSEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEE
T ss_conf             9999994999999999999987-99999989999999999728-99999985567898559999999981--89995899


Q ss_pred             EECCCCHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             963899899999997-6998899769898999999999999999999998775
Q gi|254780892|r   80 LLMEVDFEKMIAGAR-AGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD  131 (133)
Q Consensus        80 lT~~~~~~~~~~a~~-~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l~  131 (133)
                      +|++++.+...+++. .||++||.|||++++|..+++++++..+...+++.+.
T Consensus        78 lt~~~~~~~~~~a~~~~Ga~dyl~KP~~~~~L~~~v~~~~~~~~~~~e~~~l~  130 (139)
T 2jk1_A           78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENERLS  130 (139)
T ss_dssp             EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98979989999999985998089899999999999999999999999999999