HHsearch results for GI: 254780892 and protein with PDBid: 2jk1_A
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.95 E-value=2.1e-26 Score=176.39 Aligned_cols=126 Identities=26% Similarity=0.333 Sum_probs=111.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEE
Q ss_conf 77999739989999999999988989999999799999997179994899707899877--3899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~ 79 (133)
.+||||||++.+|..++..|+. ||+|.+|.||++|++.+.++ .||+|++|++||||. ++++++|+. .+++|+|+
T Consensus 2 P~ILiVDDd~~~~~~l~~~L~~-g~~v~~a~~~~~al~~~~~~-~~dlvl~D~~mP~~~G~ell~~ir~~--~~~~~vI~ 77 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALED-DFDVLTAQGAEAAIAILEEE-WVQVIICDQRMPGRTGVDFLTEVRER--WPETVRII 77 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTT-TSCEEEESSHHHHHHHHHHS-CEEEEEEESCCSSSCHHHHHHHHHHH--CTTSEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEE
T ss_conf 9999994999999999999987-99999989999999999728-99999985567898559999999981--89995899
Q ss_pred EECCCCHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 963899899999997-6998899769898999999999999999999998775
Q gi|254780892|r 80 LLMEVDFEKMIAGAR-AGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131 (133)
Q Consensus 80 lT~~~~~~~~~~a~~-~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l~ 131 (133)
+|++++.+...+++. .||++||.|||++++|..+++++++..+...+++.+.
T Consensus 78 lt~~~~~~~~~~a~~~~Ga~dyl~KP~~~~~L~~~v~~~~~~~~~~~e~~~l~ 130 (139)
T 2jk1_A 78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENERLS 130 (139)
T ss_dssp EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98979989999999985998089899999999999999999999999999999