HHsearch results for GI: 254780892 and protein with PDBid: 3cnb_A
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=99.96 E-value=1.4e-27 Score=183.39 Aligned_cols=123 Identities=15% Similarity=0.254 Sum_probs=113.5
Q ss_pred EEEEECCCHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf 799973998999999999998--898999999979999999717999489970789987--7389999614348897399
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFND--FGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~--~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii 78 (133)
||||||||+.+|+.++..|+. .|++|..|.||.+|++.+.+ ..||+||+|+.||++ +++++++|+.+..+++|||
T Consensus 10 ~ILiVDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eAl~~~~~-~~pDlillD~~mP~~dG~el~~~ir~~~~~~~ipvI 88 (143)
T 3cnb_A 10 SILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVI 88 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH-TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 9999919999999999999827898089998999999999972-799999980888999869999999847888998499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996389989999999769988997698989999999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~ 126 (133)
++|+.++.+...+++++||++||.|||+.++|..++++++++++...+
T Consensus 89 ~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~E 136 (143)
T 3cnb_A 89 AMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKATSE 136 (143)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC----
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf 998489989999999769989998989999999999999971576517