HHsearch results for GI: 254780892 and protein with PDBid: 3cu5_A

>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.94  E-value=2.5e-26  Score=176.00  Aligned_cols=118  Identities=21%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             CC-EEEEECCCHHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCC
Q ss_conf             97-799973998999999999998898---999999979999999717999489970789987--738999961434889
Q gi|254780892|r    1 MD-SLLLVDSSHIVRKVGRHLFNDFGF---MVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTD   74 (133)
Q Consensus         1 m~-~ILiVDD~~~~r~~l~~~L~~~g~---~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~   74 (133)
                      |+ |||||||++.+|..++..|+.+|+   .|.+|.||.+|++.+.+ ..||+||+|++||+|  +++++++|+.  .++
T Consensus         1 M~irILiVDD~~~~r~~l~~~L~~~~~~~~~v~~a~~g~eal~~~~~-~~pdlillDi~MP~~dG~el~~~i~~~--~p~   77 (141)
T 3cu5_A            1 MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK-HPPNVLLTDVRMPRMDGIELVDNILKL--YPD   77 (141)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT-SCCSEEEEESCCSSSCHHHHHHHHHHH--CTT
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH--CCC
T ss_conf             99749999099999999999999659984599897999999999986-799989973689999999999999975--879


Q ss_pred             CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             73999963899899999997699889976989899999999999999
Q gi|254780892|r   75 VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ  121 (133)
Q Consensus        75 ~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~  121 (133)
                      +|||++|++++.+...+|+++||.+||.||+++++|..+++++++..
T Consensus        78 ~~iI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~  124 (141)
T 3cu5_A           78 CSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV  124 (141)
T ss_dssp             CEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             93999978799999999998699989979899999999999999999