RPSBLAST alignment of GI: 254780892 and protein with PDBid: 3cnb
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Length = 143
Score = 59.2 bits (143), Expect = 3e-10
Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 7/129 (5%)
Query: 3 SLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
S+L+++ + + + A + +A + +V+ + M
Sbjct: 10 SILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGM 67
Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
++ P ++ V + + + + GA + KP N L +++L
Sbjct: 68 DGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQL 127
Query: 118 PQMQKSKDE 126
+ +K+ E
Sbjct: 128 VEQKKATSE 136