RPSBLAST alignment of GI: 254780892 and protein with PDBid: 3cnb

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Length = 143
 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           S+L+++       +      +      +  A +  +A +          +V+ + M    
Sbjct: 10  SILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGM 67

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   ++  P   ++ V  +   +  + +      GA +   KP N   L   +++L
Sbjct: 68  DGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQL 127

Query: 118 PQMQKSKDE 126
            + +K+  E
Sbjct: 128 VEQKKATSE 136