HHsearch alignment for GI: 254780893 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.91 E-value=7.5e-25 Score=169.99 Aligned_cols=116 Identities=27% Similarity=0.548 Sum_probs=111.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~ 85 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGH 85 (464)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 78999297899999999999769748985899999999862899989981678999669999999963899988998288
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100000112322101112233222111112222222
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
T Consensus 86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999999999855703332189999999999999998