HHsearch alignment for GI: 254780893 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.91  E-value=7.5e-25  Score=169.99  Aligned_cols=116  Identities=27%  Similarity=0.548  Sum_probs=111.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf             59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r    2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM   81 (236)
Q Consensus         2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~   81 (236)
T Consensus         6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~   85 (464)
T COG2204           6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGH   85 (464)
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             78999297899999999999769748985899999999862899989981678999669999999963899988998288


Q ss_pred             CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             100000112322101112233222111112222222
Q gi|254780893|r   82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR  117 (236)
Q Consensus        82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr  117 (236)
T Consensus        86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~  121 (464)
T COG2204          86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE  121 (464)
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             999999999855703332189999999999999998