HHsearch alignment for GI: 254780893 and conserved domain: COG2771
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription].
Probab=93.49 E-value=0.13 Score=30.14 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 222464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 2 ~~~Lt~rE~~~~~l~~~--G--~s~~eia~~l-----~is~~tV~~h~~~i~~Kl~~ 49 (65)
T COG2771 2 TADLTPREREILRLVAQ--G--KSNKEIARIL-----GISEETVKTHLRNIYRKLGV 49 (65)
T ss_pred CCCCCHHHHHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 21138889999999986--9--9899999998-----77999999999999999775