HHsearch alignment for GI: 254780893 and conserved domain: COG3279
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].
Probab=99.34 E-value=5.6e-13 Score=98.53 Aligned_cols=115 Identities=20% Similarity=0.427 Sum_probs=100.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998-898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivfv 81 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVFV 81 (244)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEE
T ss_conf 85177147676799999998874421111331230317888760257769997237652449999986156988539999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332100000112322101112233222111112222222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
T Consensus 82 t~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 82 TAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred EEHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 86154--32333133466774285426899999999888