HHsearch alignment for GI: 254780893 and conserved domain: COG3279

>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].
Probab=99.34  E-value=5.6e-13  Score=98.53  Aligned_cols=115  Identities=20%  Similarity=0.427  Sum_probs=100.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf             9599986998999999999998-898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r    1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL   78 (236)
Q Consensus         1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l   78 (236)
T Consensus         2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivfv   81 (244)
T COG3279           2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVFV   81 (244)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEE
T ss_conf             85177147676799999998874421111331230317888760257769997237652449999986156988539999


Q ss_pred             CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             332100000112322101112233222111112222222
Q gi|254780893|r   79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR  117 (236)
Q Consensus        79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr  117 (236)
T Consensus        82 t~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~  118 (244)
T COG3279          82 TAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRR  118 (244)
T ss_pred             EEHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             86154--32333133466774285426899999999888