HHsearch alignment for GI: 254780893 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.86 E-value=2.1e-22 Score=155.22 Aligned_cols=119 Identities=32% Similarity=0.515 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857994788311498743343111222232--233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~--~~~pII~ls 79 (236)
T Consensus 134 kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~ 213 (435)
T COG3706 134 KILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLS 213 (435)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 08997480779999999987536336651598999999746898589995578766789999997244444566389995
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32100000112322101112233222111112222222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~ 120 (236)
T Consensus 214 ~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 214 SKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred CCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 26634789999976885167347787999999999998541