HHsearch alignment for GI: 254780893 and conserved domain: COG3947
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].
Probab=99.96 E-value=1.6e-29 Score=198.08 Aligned_cols=218 Identities=22% Similarity=0.338 Sum_probs=178.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIss 80 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISS 80 (361)
T ss_pred CCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 92799846389999999999861102100688788999998438877999852378608789999987531486899963
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CCCCHHHHH
Q ss_conf 210000011232210111223322211111222222222222222222222222222222-233333222-464116889
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKT-VEVQGHRIH-LTGKEYQMI 158 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~-v~~~g~~i~-LT~~E~~lL 158 (236)
T Consensus 81 h~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~eee--~~~~iscfgg~ev~~rqg~~vkWis~KA~ELF 156 (361)
T COG3947 81 HAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAEEE--SGTQISCFGGTEVVLRQGQQVKWISRKALELF 156 (361)
T ss_pred CHH--HHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHC--CCEEEEECCCEEEECCCCCEEEEHHHHHHHHH
T ss_conf 056--52320355667541688888899999998740244441001--37046750640012347842230136799999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 9987189973789999998718877777-53036678999885110678884388887820264568
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~-~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
T Consensus 157 ayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~n--e~vts~d~~Ykld~~ 221 (361)
T COG3947 157 AYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNAN--EAVTSQDRKYKLDAG 221 (361)
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHCCC--CEEEECCCCEEEECC
T ss_conf 99998248855075799997032004668999999999999984530367--548973772477448