HHsearch alignment for GI: 254780893 and conserved domain: PRK09390
>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=100.00 E-value=1e-34 Score=229.41 Aligned_cols=182 Identities=22% Similarity=0.431 Sum_probs=157.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
T Consensus 5 tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivlT~~ 84 (202)
T PRK09390 5 VVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGH 84 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 79998499999999999999889989998999999999765797999877999998960799998722899867999745
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 10000011232210111223322211111222222222222222222222222222222233333222464116889998
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L 161 (236)
T Consensus 85 ~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~~~~~~~~~~----~~-------~~~~~~~~~LT~RE~eVL~ll 153 (202)
T PRK09390 85 GDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQAPAAAKSEA----VA-------ADIRARIASLSERERQVMDGL 153 (202)
T ss_pred CCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH----HH-------HHHHHHHCCCCHHHHHHHHHH
T ss_conf 7488889999829464455999999999999999971523242146----67-------888740066998999999999
Q ss_pred HHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 718997378999999871887777753036678999885110
Q gi|254780893|r 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 162 ~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 154 ~~--G--~snkeIA~~L-----~iS~~TV~~h~~~I~~KL~v 186 (202)
T PRK09390 154 VA--G--LSNKVIARDL-----DISPRTVEVYRANVMTKMQA 186 (202)
T ss_pred HC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 83--8--9689999997-----98788999999999999688