HHsearch alignment for GI: 254780893 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.87 E-value=1.6e-22 Score=155.95 Aligned_cols=186 Identities=14% Similarity=0.091 Sum_probs=146.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEE-EEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCEECCC
Q ss_conf 59998699899999999999889899-99999899999998579947883114987433431112-22232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA-LRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v-~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~-ir~~~~~~pII~ls 79 (236)
T Consensus 12 ~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliLT 88 (216)
T PRK10100 12 TLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLN 88 (216)
T ss_pred EEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 8999558429999999988987-64763024776677644--79998998488788308999999997259997799996
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 32100000112322101112233222111112222222222222222222222222222222333332224641168899
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~ 159 (236)
T Consensus 89 t~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~~l~~~~~~--~l~~~~~~~~-~~~~~~~~LT~RE~eIL~ 165 (216)
T PRK10100 89 TPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLAS--YLITHSGNYR-YNSTESALLTHREKEILN 165 (216)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHCCCC-CCCCCCCCCCHHHHHHHH
T ss_conf 8874899999976587667668999999999999998799723999999--9997102256-788777899989999999
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9871899737899999987188777775303667899988511
Q gi|254780893|r 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 160 ~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
T Consensus 166 lla~--G--~sNkEIA~~L-----~iSe~TVk~H~~~I~~KL~ 199 (216)
T PRK10100 166 KLRI--G--ASNNEIARSL-----FISENTVKTHLYNLFKKIA 199 (216)
T ss_pred HHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHC
T ss_conf 9987--9--9999999894-----9889899999999999809