HHsearch alignment for GI: 254780893 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.87  E-value=1.6e-22  Score=155.95  Aligned_cols=186  Identities=14%  Similarity=0.091  Sum_probs=146.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEE-EEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCEECCC
Q ss_conf             59998699899999999999889899-99999899999998579947883114987433431112-22232233100133
Q gi|254780893|r    2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA-LRVAKISTPVCILS   79 (236)
Q Consensus         2 kILivedd~~~~~~l~~~L~~~g~~v-~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~-ir~~~~~~pII~ls   79 (236)
T Consensus        12 ~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliLT   88 (216)
T PRK10100         12 TLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLN   88 (216)
T ss_pred             EEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             8999558429999999988987-64763024776677644--79998998488788308999999997259997799996


Q ss_pred             CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             32100000112322101112233222111112222222222222222222222222222222333332224641168899
Q gi|254780893|r   80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE  159 (236)
Q Consensus        80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~  159 (236)
T Consensus        89 t~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~~l~~~~~~--~l~~~~~~~~-~~~~~~~~LT~RE~eIL~  165 (216)
T PRK10100         89 TPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLAS--YLITHSGNYR-YNSTESALLTHREKEILN  165 (216)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHCCCC-CCCCCCCCCCHHHHHHHH
T ss_conf             8874899999976587667668999999999999998799723999999--9997102256-788777899989999999


Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9871899737899999987188777775303667899988511
Q gi|254780893|r  160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS  202 (236)
Q Consensus       160 ~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~  202 (236)
T Consensus       166 lla~--G--~sNkEIA~~L-----~iSe~TVk~H~~~I~~KL~  199 (216)
T PRK10100        166 KLRI--G--ASNNEIARSL-----FISENTVKTHLYNLFKKIA  199 (216)
T ss_pred             HHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHC
T ss_conf             9987--9--9999999894-----9889899999999999809