HHsearch alignment for GI: 254780893 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.95 E-value=2.6e-27 Score=184.81 Aligned_cols=179 Identities=22% Similarity=0.300 Sum_probs=150.2
Q ss_pred CEEEEECCCHHHHHHHHHHHH-HCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999-8898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLK-SENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~-~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
T Consensus 2 i~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~---~~~vivl 78 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIML 78 (196)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC---CCCEEEE
T ss_conf 1999987979999999999812999599999899999999887449999998788788620779999843---8748999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 33210000011232210111223322211111222222222222222222222222222222233333222464116889
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL 158 (236)
T Consensus 79 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~~------~~~~~~~----~-~l-~~~~~~~LT~RE~eVL 146 (196)
T PRK10360 79 SVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC------YLTPDIA----I-KL-ASGRQDPLTKRERQVA 146 (196)
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC------CCCHHHH----H-HH-HCCCCCCCCHHHHHHH
T ss_conf 730759999999975998899778999999999999986995------6799999----9-98-7167689997999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998718997378999999871887777753036678999885110
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 147 ~lia~--G--~snkeIA~~L-----~IS~~TVk~h~~~i~~KL~v 182 (196)
T PRK10360 147 EKLAQ--G--MAVKEIAAEL-----GLSPKTVHVHRANLMEKLGV 182 (196)
T ss_pred HHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 99987--9--9999999996-----99999999999999998199