HHsearch alignment for GI: 254780893 and conserved domain: PRK10766
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional.
Probab=100.00 E-value=0 Score=376.91 Aligned_cols=210 Identities=28% Similarity=0.477 Sum_probs=198.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 3 ~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi~lp~~~G~el~~~iR~~~-~~piI~lta 81 (224)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRS-TVGIILVTG 81 (224)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC-CCCEEEECC
T ss_conf 7199991999999999999998799999989999999999608999999889999887661376763047-855686335
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2100000112322101112233222111112222222222------------2222222222222222222223333322
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI 148 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~------------~~~~~~~~~g~~~~d~~~~~v~~~g~~i 148 (236)
T Consensus 82 ~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~i 161 (224)
T PRK10766 82 RTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLARQAQAVAEQPETQDNCYRFAGYCLNVNRRTLERNGEPI 161 (224)
T ss_pred CCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEE
T ss_conf 58989999999849414513999889999999999725244211211234667778769999999988888999899998
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 24641168899987189973789999998718877777530366789998851106788843888878
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG 216 (236)
T Consensus 162 ~LT~~E~~lL~~L~~~~g~vvsre~L~~~vw~~~~~~~~~sid~~I~rLRkKl~-----~~~I~tv~G 224 (224)
T PRK10766 162 KLTKAEYELLVAFVTNPGQVLSRERLLRMLSHRVEDPNDRTIDVLIRRLRHKLN-----PDLFVTVHG 224 (224)
T ss_pred ECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC-----CCCEEECCC
T ss_conf 678999999999996799739699999996488878884729999999997679-----886794989