HHsearch alignment for GI: 254780893 and conserved domain: PRK10840

>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.94  E-value=1.3e-26  Score=180.64  Aligned_cols=186  Identities=16%  Similarity=0.166  Sum_probs=153.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCE
Q ss_conf             9599986998999999999998-898999-9999899999998579947883114987---4334311122223223310
Q gi|254780893|r    1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTD---IPGFEVLRALRVAKISTPV   75 (236)
Q Consensus         1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~---~~G~~~~~~ir~~~~~~pI   75 (236)
T Consensus         4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~v   83 (216)
T PRK10840          4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSI   83 (216)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             88999889799999999998159996899987999999999862398989982677999887899999999985899808


Q ss_pred             ECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCH
Q ss_conf             0133321000001123221011122332221111122222222222222222222222222222223333-322246411
Q gi|254780893|r   76 CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKE  154 (236)
Q Consensus        76 I~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g-~~i~LT~~E  154 (236)
T Consensus        84 ivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G~~~~~~~~---~~~-l----~~~~~~~~~~~~LT~RE  155 (216)
T PRK10840         84 IVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESV---SRL-L----EKISAGGYGDKRLSPKE  155 (216)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH---HHH-H----HHHCCCCCCCCCCCHHH
T ss_conf             998477878999999858974899878999999999999987994396999---999-9----97205888778999899


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6889998718997378999999871887777753036678999885110
Q gi|254780893|r  155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN  203 (236)
Q Consensus       155 ~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~  203 (236)
T Consensus       156 ~eVL~lla~--G--~snkeIA~~L-----~iS~~TV~~h~~~i~~KLgv  195 (216)
T PRK10840        156 SEVLRLFAE--G--FLVTEIAKKL-----NRSIKTISSQKKSAMMKLGV  195 (216)
T ss_pred             HHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf             999999986--9--9999999896-----98999999999999998299