HHsearch alignment for GI: 254780893 and conserved domain: PRK10840
>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.94 E-value=1.3e-26 Score=180.64 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=153.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCE
Q ss_conf 9599986998999999999998-898999-9999899999998579947883114987---4334311122223223310
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTD---IPGFEVLRALRVAKISTPV 75 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~---~~G~~~~~~ir~~~~~~pI 75 (236)
T Consensus 4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~v 83 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSI 83 (216)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 88999889799999999998159996899987999999999862398989982677999887899999999985899808
Q ss_pred ECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCH
Q ss_conf 0133321000001123221011122332221111122222222222222222222222222222223333-322246411
Q gi|254780893|r 76 CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKE 154 (236)
Q Consensus 76 I~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g-~~i~LT~~E 154 (236)
T Consensus 84 ivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G~~~~~~~~---~~~-l----~~~~~~~~~~~~LT~RE 155 (216)
T PRK10840 84 IVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESV---SRL-L----EKISAGGYGDKRLSPKE 155 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH---HHH-H----HHHCCCCCCCCCCCHHH
T ss_conf 998477878999999858974899878999999999999987994396999---999-9----97205888778999899
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6889998718997378999999871887777753036678999885110
Q gi|254780893|r 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 155 ~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 156 ~eVL~lla~--G--~snkeIA~~L-----~iS~~TV~~h~~~i~~KLgv 195 (216)
T PRK10840 156 SEVLRLFAE--G--FLVTEIAKKL-----NRSIKTISSQKKSAMMKLGV 195 (216)
T ss_pred HHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 999999986--9--9999999896-----98999999999999998299