HHsearch alignment for GI: 254780893 and conserved domain: PRK11475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=99.78 E-value=3e-19 Score=136.32 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=135.4
Q ss_pred HHHHHHHHHHCC-----CEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHC
Q ss_conf 999999999889-----8999-9999899999998579947883114987433431112222322331001333210000
Q gi|254780893|r 13 AHSIELMLKSEN-----FNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIED 86 (236)
Q Consensus 13 ~~~l~~~L~~~g-----~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~ 86 (236)
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~~v~~~LmDi~mP~~dGL~~~~~L~r~~P~vriLVLTm~d~e~~ 82 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEAR 82 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 78899998418998348999505456999986288666438985389999766999999999789971899974768799
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 011232-2101112233222111112222222222222222222222222222222333332224641168899987189
Q gi|254780893|r 87 KVRGLQ-SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 (236)
Q Consensus 87 ~~~al~-~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~ 165 (236)
T Consensus 83 v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g~~~~~~~~-----------~~-~~~~~~~~~Lt~rE~eVl~l~a~-- 148 (205)
T PRK11475 83 LIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRL-----------NN-QWYINQSRMLSPTEREILRFMSR-- 148 (205)
T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHCHHH-----------HC-CCCCCCCCCCCHHHHHHHHHHHC--
T ss_conf 99999984166888567889999999999870611313466-----------53-45677678898589999999976--
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97378999999871887777753036678999885110
Q gi|254780893|r 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 166 g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 149 G--~s~~eIA~~L-----~~S~kTv~thr~~~m~KLgv 179 (205)
T PRK11475 149 G--YSMPQIAEQL-----ERNIKTIRAHKFNVMSKLGV 179 (205)
T ss_pred C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 9--9999999997-----88888999999999998299