HHsearch alignment for GI: 254780893 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.44 E-value=8.2e-15 Score=109.57 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=98.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 18 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~ 97 (674)
T PRK13558 18 IGVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPT 97 (674)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 89999468887775234566677421276323888986531589876996565788867999999861389998899956
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000001123221011122332221111122222
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l 115 (236)
T Consensus 98 ~gsE~vas~AI~AGvt~Yl--p~~~~~~~~~~~~~ 130 (674)
T PRK13558 98 AVDEDVARRAVDADATGLV--PAVSEDATAAIADR 130 (674)
T ss_pred CCCHHHHHHHHHHCHHHHC--CCCCHHHHHHHHHH
T ss_conf 7858999998751636433--44717689999999