HHsearch alignment for GI: 254780893 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.44  E-value=8.2e-15  Score=109.57  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=98.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf             95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r    1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG   80 (236)
Q Consensus         1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~   80 (236)
T Consensus        18 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~   97 (674)
T PRK13558         18 IGVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPT   97 (674)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             89999468887775234566677421276323888986531589876996565788867999999861389998899956


Q ss_pred             CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21000001123221011122332221111122222
Q gi|254780893|r   81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI  115 (236)
Q Consensus        81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l  115 (236)
T Consensus        98 ~gsE~vas~AI~AGvt~Yl--p~~~~~~~~~~~~~  130 (674)
T PRK13558         98 AVDEDVARRAVDADATGLV--PAVSEDATAAIADR  130 (674)
T ss_pred             CCCHHHHHHHHHHCHHHHC--CCCCHHHHHHHHHH
T ss_conf             7858999998751636433--44717689999999