HHsearch alignment for GI: 254780893 and conserved domain: PRK13856
>PRK13856 two-component response regulator VirG; Provisional.
Probab=100.00 E-value=0 Score=384.80 Aligned_cols=228 Identities=28% Similarity=0.418 Sum_probs=208.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC-
Q ss_conf 5999869989999999999988989999999899999998579947883114987433431112222322331001333-
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG- 80 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~- 80 (236)
T Consensus 3 ~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~~-~~piiilt~~ 81 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKS-DVPIIIISGD 81 (241)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCC-CCCEEEEECC
T ss_conf 899996989999999999987799999989999999998659999999969998766134555640369-9736999726
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 210000011232210111223322211111222222222222----2222222222222222222-33333222464116
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEY 155 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~----~~~~~~~g~~~~d~~~~~v-~~~g~~i~LT~~E~ 155 (236)
T Consensus 82 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~~~~~~~~~~~~~~~~~~~ld~~~~~l~~~~~~~v~LT~~E~ 161 (241)
T PRK13856 82 RLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRPNVVRTKDRRSFCFADWTLNLRQRRLISEAGGEVKLTAGEF 161 (241)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCEEEEECCEEEECCHHHH
T ss_conf 78789999998769988997776777999999999874546567776744998999997578789997996986788999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCCCC
Q ss_conf 88999871899737899999987188777775303667899988511067888438888782026456887545566
Q gi|254780893|r 156 QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 (236)
Q Consensus 156 ~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~~~e~~~~ 232 (236)
T Consensus 162 ~lL~~L~~~~~~vvsRe~L~~~~~~~~~~~~~r~id~~I~rLRkKL~~~~~~~~~I~TvrG~GY~f~~~~~~--~~~ 236 (241)
T PRK13856 162 NLLVAFLEKPRDVLSREQLLIASRVREEEVYDRSIDVLILRLRRKLEQDPANPQLIKTARGAGYFFDADVDV--SYG 236 (241)
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCC--CCC
T ss_conf 999999876994381999999844567788868699999999997313889998099773715498232463--346