HHsearch alignment for GI: 254780893 and conserved domain: TIGR02875

>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.91  E-value=3.7e-25  Score=171.86  Aligned_cols=118  Identities=32%  Similarity=0.519  Sum_probs=107.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHH-HCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC-CC-EE
Q ss_conf             959998699899999999999-8898999-99998999999985799478831149874334311122223223-31-00
Q gi|254780893|r    1 MRILLIEDDKALAHSIELMLK-SENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS-TP-VC   76 (236)
Q Consensus         1 mkILivedd~~~~~~l~~~L~-~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~-~p-II   76 (236)
T Consensus         3 Iri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi   82 (270)
T TIGR02875         3 IRIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVI   82 (270)
T ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             28999828889999999998528983899741476899999960899899951504300057999998898874489588


Q ss_pred             CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             133321000001123221011122332221111122222222
Q gi|254780893|r   77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR  118 (236)
Q Consensus        77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr  118 (236)
T Consensus        83 ~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~  124 (270)
T TIGR02875        83 MLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG  124 (270)
T ss_pred             EEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf             852237558999999728981566504178899999986246