HHsearch alignment for GI: 254780893 and conserved domain: TIGR02915

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.72  E-value=1.8e-18  Score=131.66  Aligned_cols=112  Identities=26%  Similarity=0.424  Sum_probs=102.9

Q ss_pred             EEEECCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC-CC----CCCCCCCCCCCCCCCCCEE
Q ss_conf             99986998999999999998-898999999989999999857994788311498-74----3343111222232233100
Q gi|254780893|r    3 ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DI----PGFEVLRALRVAKISTPVC   76 (236)
Q Consensus         3 ILivedd~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp-~~----~G~~~~~~ir~~~~~~pII   76 (236)
T Consensus         1 LLiVeDD~glQKQLk--Ws~G~~Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVI   78 (451)
T TIGR02915         1 LLIVEDDLGLQKQLK--WSFGADYEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI   78 (451)
T ss_pred             CCEEECCHHHHHHHH--HHCCCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             924536866567876--415788403553475789998605699647736755789887458999999999638980489


Q ss_pred             CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1333210000011232210111223322211111222222
Q gi|254780893|r   77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV  116 (236)
Q Consensus        77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll  116 (236)
T Consensus        79 ViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf  118 (451)
T TIGR02915        79 VITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAF  118 (451)
T ss_pred             EEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9866898388999964375101357875789999999988