HHsearch alignment for GI: 254780893 and conserved domain: TIGR03471

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=90.71  E-value=0.22  Score=28.77  Aligned_cols=87  Identities=15%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHCCCEEEE-ECC--HHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHC
Q ss_conf             9999999999988989999-999--89999999857994788311498743-3431112222322331001333210000
Q gi|254780893|r   11 ALAHSIELMLKSENFNVYV-TDL--GEDGIELCKFYEFDAIILDLGLTDIP-GFEVLRALRVAKISTPVCILSGMSSIED   86 (236)
Q Consensus        11 ~~~~~l~~~L~~~g~~v~~-a~~--~~eal~~~~~~~~DlvIlD~~lp~~~-G~~~~~~ir~~~~~~pII~ls~~~~~~~   86 (236)
T Consensus        35 ~wlay~a~~~~~~-~~iDa~~~~~~~~~~~~~--~~~~d~v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~T~~p  111 (472)
T TIGR03471        35 TWLAQPAAMIPGS-RLVDAPPHGVTIDDTLAI--AKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLP  111 (472)
T ss_pred             HHHHHHHHCCCCC-CEEECCCCCCCHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             7899986404678-375277668998999998--5069989999258656889999999997688988999787643689


Q ss_pred             CCCCC-CCCCCCCCCC
Q ss_conf             01123-2210111223
Q gi|254780893|r   87 KVRGL-QSGADDYISK  101 (236)
Q Consensus        87 ~~~al-~~GAddyi~K  101 (236)
T Consensus       112 e-e~L~~~~~iD~Vvr  126 (472)
T TIGR03471       112 E-KTLKQGPAIDFVCR  126 (472)
T ss_pred             H-HHHHCCCCEEEEEE
T ss_conf             9-99843897269992