HHsearch alignment for GI: 254780893 and conserved domain: pfam00196
>pfam00196 GerE Bacterial regulatory proteins, luxR family.
Probab=96.92 E-value=0.0012 Score=42.28 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 3 ~LT~RE~~il~~l~~--G--~s~~eIA~~L-----~is~~TV~~h~~~i~~Kl~v 48 (58)
T pfam00196 3 SLSPREREVLRLLAA--G--KSNKEIADIL-----GISEKTVKVHRSNIMRKLNV 48 (58)
T ss_pred CCCHHHHHHHHHHHH--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 779999999999980--7--9999999997-----88899999999999998099