HHsearch alignment for GI: 254780893 and conserved domain: smart00421
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=96.62 E-value=0.0029 Score=40.05 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 3 ~LT~rE~~il~~l~~--G--~s~~eIA~~L-----~is~~TV~~~~~~i~~Kl~v 48 (58)
T smart00421 3 SLTPREREVLRLLAE--G--LTNKEIAERL-----GISEKTVKTHLSNIMRKLGV 48 (58)
T ss_pred CCCHHHHHHHHHHHH--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 618999999999981--7--9999999898-----97898999999999998489