HHsearch alignment for GI: 254780893 and conserved domain: smart00421

>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=96.62  E-value=0.0029  Score=40.05  Aligned_cols=46  Identities=24%  Similarity=0.350  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r  149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN  203 (236)
Q Consensus       149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~  203 (236)
T Consensus         3 ~LT~rE~~il~~l~~--G--~s~~eIA~~L-----~is~~TV~~~~~~i~~Kl~v   48 (58)
T smart00421        3 SLTPREREVLRLLAE--G--LTNKEIAERL-----GISEKTVKTHLSNIMRKLGV   48 (58)
T ss_pred             CCCHHHHHHHHHHHH--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf             618999999999981--7--9999999898-----97898999999999998489